BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (643 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enter... 717 0.0 UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 T... 650 0.0 UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymera... 624 e-177 UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymera... 620 e-176 UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 T... 606 e-172 UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase... 598 e-169 UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pa... 598 e-169 UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Ta... 587 e-166 UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fi... 587 e-166 UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Ta... 581 e-164 UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 T... 578 e-163 UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, puta... 578 e-163 UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxaloba... 576 e-163 UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 T... 575 e-162 UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 T... 574 e-162 UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Ta... 574 e-162 UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase... 566 e-160 UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 566 e-160 UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, puta... 565 e-159 UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=ce... 565 e-159 UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax... 564 e-159 UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Ta... 564 e-159 UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseria... 564 e-159 UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 T... 563 e-159 UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicr... 563 e-159 UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 T... 562 e-158 UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 ... 561 e-158 UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Ta... 559 e-157 UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 557 e-157 UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 T... 554 e-156 UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Ta... 551 e-155 UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionac... 551 e-155 UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Ha... 549 e-154 UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA ... 543 e-153 UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 T... 542 e-152 UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 T... 539 e-151 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 539 e-151 UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pas... 537 e-151 UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Ba... 535 e-150 UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Co... 533 e-150 UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bactero... 529 e-149 UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 T... 528 e-148 UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 ... 524 e-147 UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 T... 523 e-147 UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, puta... 522 e-146 UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Ta... 522 e-146 UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Ba... 521 e-146 UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 T... 520 e-146 UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 T... 519 e-145 UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 T... 517 e-145 UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 T... 516 e-144 UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 T... 514 e-144 UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA ... 514 e-144 UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 T... 514 e-144 UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibriona... 513 e-144 UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Ta... 513 e-143 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 512 e-143 UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma ... 510 e-143 UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Ta... 510 e-143 UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 ... 510 e-143 UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 T... 509 e-142 UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=D... 508 e-142 UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Ta... 508 e-142 UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau sub... 507 e-142 UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 T... 507 e-142 UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 T... 506 e-141 UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Sl... 506 e-141 UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 ... 504 e-141 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 504 e-141 UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 T... 503 e-141 UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 T... 502 e-140 UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderi... 501 e-140 UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Ba... 501 e-140 UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clo... 501 e-140 UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propion... 501 e-140 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 500 e-140 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 500 e-140 UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 T... 500 e-140 UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotro... 499 e-139 UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subuni... 499 e-139 UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunit... 499 e-139 UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Ba... 499 e-139 UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Ta... 499 e-139 UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2... 499 e-139 UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 T... 499 e-139 UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 ... 498 e-139 UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 498 e-139 UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W... 498 e-139 UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 T... 498 e-139 UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Ta... 498 e-139 UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=roo... 498 e-139 UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 T... 498 e-139 UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 T... 497 e-139 UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candida... 497 e-139 UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 T... 497 e-139 UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 496 e-139 UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 T... 496 e-138 UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 T... 496 e-138 UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 496 e-138 UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Ta... 495 e-138 UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 T... 495 e-138 UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau... 495 e-138 UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 T... 495 e-138 UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79... 495 e-138 UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 T... 495 e-138 UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 T... 495 e-138 UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 T... 495 e-138 UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 T... 495 e-138 UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobac... 494 e-138 UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter s... 494 e-138 UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiob... 494 e-138 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 494 e-138 UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase... 493 e-138 UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 T... 493 e-138 UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lys... 493 e-138 UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, puta... 493 e-138 UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 T... 493 e-137 UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase... 492 e-137 UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymera... 492 e-137 UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 T... 492 e-137 UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 T... 492 e-137 UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 T... 492 e-137 UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 T... 491 e-137 UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostri... 491 e-137 UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Ta... 490 e-137 UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Co... 490 e-137 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 490 e-137 UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Ta... 489 e-136 UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Ta... 489 e-136 UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 489 e-136 UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 T... 489 e-136 UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 T... 489 e-136 UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 489 e-136 UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax... 488 e-136 UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 T... 488 e-136 UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymera... 487 e-136 UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdema... 487 e-136 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 486 e-135 UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 T... 486 e-135 UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, puta... 486 e-135 UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and ta... 486 e-135 UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=ce... 486 e-135 UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 T... 486 e-135 UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 485 e-135 UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 T... 485 e-135 UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax... 485 e-135 UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Be... 484 e-135 UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 T... 484 e-135 UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 T... 484 e-135 UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 ... 483 e-135 UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacill... 483 e-134 UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella a... 483 e-134 UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Ta... 482 e-134 UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcu... 482 e-134 UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=P... 482 e-134 UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Ta... 482 e-134 UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 T... 482 e-134 UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydroba... 481 e-134 UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 T... 481 e-134 UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 T... 481 e-134 UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Pl... 480 e-134 UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 ... 480 e-134 UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 479 e-133 UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 T... 479 e-133 UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus Rep... 479 e-133 UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 T... 479 e-133 UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Ta... 478 e-133 UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymera... 477 e-133 UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 T... 477 e-133 UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 T... 477 e-133 UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Ba... 476 e-132 UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteri... 476 e-132 UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Ta... 476 e-132 UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Mic... 476 e-132 UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n... 476 e-132 UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 476 e-132 UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Cox... 476 e-132 UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsi... 474 e-132 UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 T... 474 e-132 UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 T... 473 e-132 UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits ... 473 e-132 UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 T... 473 e-131 UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymera... 473 e-131 UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 T... 472 e-131 UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragm... 472 e-131 UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Ta... 472 e-131 UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau... 472 e-131 UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 T... 471 e-131 UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Ta... 471 e-131 UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Ta... 471 e-131 UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits... 471 e-131 UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=The... 470 e-131 UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 470 e-131 UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Ta... 469 e-130 UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 T... 469 e-130 UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteob... 469 e-130 UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 T... 469 e-130 UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 T... 469 e-130 UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunit... 468 e-130 UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Strept... 468 e-130 UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacte... 468 e-130 UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Ta... 468 e-130 UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 T... 468 e-130 UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 T... 468 e-130 UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1... 467 e-130 UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bac... 467 e-130 UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 T... 467 e-130 UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 T... 467 e-130 UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax... 467 e-130 UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 T... 467 e-130 UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobac... 466 e-130 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 466 e-129 UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match)... 466 e-129 UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 T... 466 e-129 UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau ... 465 e-129 UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 465 e-129 UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bac... 465 e-129 UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 T... 465 e-129 UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 T... 465 e-129 UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Ta... 464 e-129 UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 T... 464 e-129 UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Ta... 464 e-129 UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 T... 464 e-129 UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 T... 462 e-128 UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 T... 462 e-128 UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, puta... 462 e-128 UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 T... 462 e-128 UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfo... 461 e-128 UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 T... 461 e-128 UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 T... 460 e-128 UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Me... 460 e-128 UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 T... 460 e-128 UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 T... 460 e-128 UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 T... 460 e-127 UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Ta... 458 e-127 UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 T... 457 e-127 UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Ato... 457 e-127 UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alp... 457 e-127 UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococca... 456 e-126 UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 ... 456 e-126 UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium... 456 e-126 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 455 e-126 UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 T... 455 e-126 UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 ... 455 e-126 UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimo... 455 e-126 UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacte... 454 e-126 UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonel... 454 e-126 UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 ... 454 e-126 UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ru... 454 e-126 UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacter... 453 e-126 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 453 e-125 UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Ba... 453 e-125 UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners D... 452 e-125 UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 T... 452 e-125 UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Ta... 452 e-125 UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 T... 452 e-125 UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax... 452 e-125 UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 T... 451 e-125 UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=un... 450 e-125 UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 T... 450 e-125 UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 T... 450 e-125 UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 T... 450 e-125 UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=be... 450 e-124 UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mob... 450 e-124 UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=P... 449 e-124 UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 T... 449 e-124 UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetell... 449 e-124 UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau sub... 449 e-124 UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 ... 449 e-124 UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=c... 448 e-124 UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=L... 448 e-124 UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collins... 447 e-124 UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 T... 447 e-124 UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 T... 447 e-124 UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 ... 447 e-124 UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 T... 447 e-124 UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 447 e-124 UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=St... 447 e-124 UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 T... 446 e-123 UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY 446 e-123 UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=P... 446 e-123 UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Ta... 446 e-123 UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptospora... 446 e-123 UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 T... 445 e-123 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 445 e-123 UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 445 e-123 UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 T... 445 e-123 UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 T... 445 e-123 UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 T... 444 e-123 UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=L... 444 e-123 UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Ta... 443 e-123 UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 ... 443 e-122 UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 T... 442 e-122 UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Ta... 442 e-122 UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 T... 442 e-122 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 441 e-122 UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 T... 441 e-122 UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=R... 441 e-122 UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 T... 440 e-122 UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 ... 440 e-122 UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium Rep... 440 e-122 UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinom... 440 e-122 UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Ta... 440 e-122 UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella... 440 e-122 UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 T... 440 e-122 UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 T... 440 e-121 UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Ta... 440 e-121 UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerof... 439 e-121 UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 T... 439 e-121 UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenel... 439 e-121 UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Lep... 438 e-121 UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Ana... 437 e-121 UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 T... 437 e-121 UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Ac... 437 e-121 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 435 e-120 UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaul... 435 e-120 UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanoba... 434 e-120 UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Entero... 434 e-120 UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 434 e-120 UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campyloba... 434 e-120 UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax... 433 e-119 UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Ta... 433 e-119 UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Ta... 432 e-119 UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Br... 432 e-119 UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 T... 432 e-119 UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 T... 431 e-119 UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 T... 431 e-119 UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 T... 431 e-119 UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 T... 431 e-119 UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 T... 430 e-119 UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax... 430 e-119 UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 T... 429 e-118 UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=... 429 e-118 UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptosp... 429 e-118 UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 T... 429 e-118 UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 ... 428 e-118 UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax... 428 e-118 UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax... 427 e-118 UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Ch... 427 e-118 UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 T... 426 e-117 UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Ca... 426 e-117 UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 T... 426 e-117 UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax... 426 e-117 UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bactero... 425 e-117 UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 T... 424 e-117 UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bif... 424 e-117 UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Ta... 423 e-116 UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 423 e-116 UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 T... 423 e-116 UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=W... 423 e-116 UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bif... 422 e-116 UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=S... 422 e-116 UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidob... 422 e-116 UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax... 422 e-116 UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonp... 422 e-116 UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 T... 422 e-116 UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n... 420 e-116 UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=The... 420 e-116 UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 T... 420 e-116 UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 T... 420 e-115 UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia ... 419 e-115 UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 T... 419 e-115 UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasm... 418 e-115 UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 T... 418 e-115 UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 T... 418 e-115 UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=... 418 e-115 UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 T... 418 e-115 UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 T... 418 e-115 UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Ca... 417 e-115 UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 T... 417 e-115 UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 T... 417 e-115 UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau... 417 e-115 UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and t... 417 e-115 UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylob... 415 e-114 UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Ta... 415 e-114 UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Ta... 415 e-114 UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 T... 414 e-114 UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alp... 414 e-114 UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=My... 414 e-114 UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax... 414 e-114 UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinob... 414 e-114 UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 T... 414 e-114 UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gem... 413 e-114 UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 T... 413 e-113 UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Ta... 413 e-113 UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 T... 412 e-113 UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Ta... 411 e-113 UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax... 410 e-113 UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Le... 410 e-113 UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 410 e-112 UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 T... 407 e-112 UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinom... 406 e-111 UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Le... 406 e-111 UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clo... 405 e-111 UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Ta... 405 e-111 UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicob... 404 e-111 UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 T... 403 e-110 UniRef50_B3TCV4 Putative ATPase family associated with various c... 402 e-110 UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=... 402 e-110 UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 401 e-110 UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa ... 400 e-109 UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=My... 399 e-109 UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax... 399 e-109 UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicob... 398 e-109 UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau... 398 e-109 UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, s... 398 e-109 UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 398 e-109 UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and ta... 398 e-109 UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicob... 398 e-109 UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Ta... 396 e-108 UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fu... 396 e-108 UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=... 396 e-108 UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 T... 396 e-108 UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 T... 392 e-107 UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oe... 392 e-107 UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR 388 e-106 UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 T... 388 e-106 UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4... 385 e-105 UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 T... 384 e-105 UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanoth... 384 e-105 UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 T... 383 e-105 UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=My... 381 e-104 UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomo... 380 e-104 UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana R... 380 e-103 UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X ph... 378 e-103 UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and ... 376 e-102 UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 375 e-102 UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR 374 e-102 UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 373 e-101 UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 T... 372 e-101 UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 T... 372 e-101 UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buc... 369 e-100 UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 364 7e-99 UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I... 363 1e-98 UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, s... 361 5e-98 UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=... 357 8e-97 UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 T... 357 1e-96 UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Ta... 355 2e-96 UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 T... 354 7e-96 UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabido... 354 8e-96 UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau su... 352 3e-95 UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, s... 352 3e-95 UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidop... 352 3e-95 UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 347 6e-94 UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae... 345 4e-93 UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultu... 335 2e-90 UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1... 334 9e-90 UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF... 333 1e-89 UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MV... 322 3e-86 UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostri... 317 9e-85 UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostri... 315 4e-84 UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=... 314 9e-84 UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n... 311 6e-83 UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=... 309 2e-82 UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=... 308 4e-82 UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 T... 308 6e-82 UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=... 305 5e-81 UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 T... 305 5e-81 UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 303 1e-80 UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=... 302 3e-80 UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostri... 300 1e-79 UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 297 1e-78 UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=P... 294 8e-78 UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small... 291 4e-77 UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Rosebur... 291 5e-77 UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax... 289 2e-76 UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=... 287 7e-76 UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 286 1e-75 UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coproco... 285 4e-75 UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttle... 284 8e-75 UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacte... 283 1e-74 UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=... 283 2e-74 UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbio... 280 1e-73 UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntro... 278 4e-73 UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=... 277 1e-72 UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=... 277 1e-72 UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Ta... 276 2e-72 UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=... 276 2e-72 UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales... 274 5e-72 UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=... 274 6e-72 UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Coryneb... 274 9e-72 UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostri... 273 1e-71 UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=... 273 2e-71 UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=... 269 2e-70 UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=... 267 8e-70 UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative... 267 9e-70 UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1... 264 8e-69 UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=... 260 1e-67 UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 T... 259 2e-67 UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevib... 259 3e-67 UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=... 259 3e-67 UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n... 258 4e-67 UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 258 4e-67 UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=... 257 1e-66 UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacte... 256 1e-66 UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bac... 256 2e-66 UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 ... 256 2e-66 UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanob... 256 2e-66 UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibac... 254 8e-66 UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=... 254 8e-66 UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bact... 254 9e-66 UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 T... 253 1e-65 UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=... 253 2e-65 UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cysto... 252 3e-65 UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=... 252 3e-65 UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=... 252 3e-65 UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpet... 251 4e-65 UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=B... 250 1e-64 UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=... 250 1e-64 UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax... 249 2e-64 UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Ta... 248 4e-64 UniRef50_B3T4L9 Putative ATPase family associated with various c... 248 4e-64 UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidam... 246 2e-63 UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n... 245 3e-63 UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH 245 4e-63 UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacill... 245 5e-63 UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=... 244 5e-63 UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=... 244 1e-62 UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacte... 243 2e-62 UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactoba... 242 3e-62 UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5... 242 4e-62 UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Plancto... 241 9e-62 UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncult... 240 1e-61 UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnob... 239 2e-61 UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotro... 238 5e-61 UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=... 236 2e-60 UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 236 2e-60 UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=... 232 3e-59 UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bac... 232 4e-59 UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=... 231 5e-59 UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collins... 231 8e-59 UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacill... 231 8e-59 UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium El... 231 1e-58 UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=... 229 2e-58 UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium Re... 229 4e-58 UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacil... 227 1e-57 UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitro... 225 5e-57 UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiace... 224 7e-57 UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 T... 223 2e-56 UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lacto... 222 4e-56 UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n... 222 4e-56 UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=... 222 4e-56 UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylo... 219 2e-55 UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Pl... 219 2e-55 UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 217 8e-55 UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collins... 216 2e-54 UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=... 214 7e-54 UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2... 214 1e-53 UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=... 213 2e-53 UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, hol... 210 1e-52 UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium ... 209 2e-52 UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit... 209 2e-52 UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=... 209 3e-52 UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax... 207 2e-51 UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Bl... 206 2e-51 UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactob... 206 3e-51 UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostr... 206 3e-51 UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit... 205 4e-51 UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clos... 205 5e-51 UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putativ... 203 1e-50 UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostri... 203 2e-50 UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 T... 203 2e-50 UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Coryneb... 200 1e-49 UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Barto... 200 2e-49 UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=d... 199 2e-49 UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=... 199 4e-49 UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Fle... 198 5e-49 UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime sub... 198 6e-49 UniRef50_D0LQE3 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 198 7e-49 UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactob... 197 8e-49 UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=D... 197 8e-49 UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Ta... 197 1e-48 UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=... 197 1e-48 UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacill... 196 2e-48 UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=... 196 2e-48 UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Br... 196 2e-48 UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=... 195 3e-48 UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=H... 195 3e-48 UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissel... 194 7e-48 UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostr... 194 8e-48 UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like prote... 194 8e-48 UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=... 194 8e-48 UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorang... 194 9e-48 UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cyt... 193 2e-47 UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 192 3e-47 UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacte... 192 3e-47 UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Coryneb... 192 4e-47 UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=... 192 4e-47 UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime sub... 192 4e-47 UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bactero... 192 5e-47 UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit ... 191 6e-47 UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Cory... 190 1e-46 UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostr... 190 2e-46 UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rh... 190 2e-46 UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=... 189 2e-46 UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_L... 189 3e-46 UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archa... 187 1e-45 UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau su... 187 1e-45 UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachl... 187 1e-45 UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Th... 186 2e-45 UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermane... 186 2e-45 UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=E... 186 3e-45 UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-te... 185 3e-45 UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subu... 185 3e-45 UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacte... 185 5e-45 UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Ky... 185 5e-45 UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=... 185 6e-45 UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporo... 184 8e-45 UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex... 184 9e-45 UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=... 184 1e-44 UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas v... 183 2e-44 UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=... 182 3e-44 UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella the... 182 4e-44 UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdello... 182 4e-44 UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=... 182 5e-44 UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=... 181 8e-44 UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacte... 181 8e-44 UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Ta... 180 2e-43 UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdema... 179 3e-43 UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 T... 179 3e-43 UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=... 179 3e-43 UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisse... 179 3e-43 UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micro... 179 4e-43 UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n... 179 4e-43 UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine ... 178 5e-43 UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=... 178 5e-43 UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxaloba... 178 5e-43 UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=... 178 8e-43 UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya ... 177 1e-42 UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actin... 177 1e-42 UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Ta... 177 1e-42 UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenoph... 177 1e-42 UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n... 177 2e-42 UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=... 177 2e-42 UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=... 177 2e-42 UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas v... 176 2e-42 UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=... 176 2e-42 UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryo... 175 4e-42 UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Coryn... 175 4e-42 UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=... 175 6e-42 UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Eury... 174 7e-42 UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=... 174 7e-42 UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoaltero... 174 7e-42 UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=... 174 9e-42 UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya ... 174 9e-42 UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n... 173 2e-41 UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Therm... 173 2e-41 UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=... 173 2e-41 UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Coryn... 173 2e-41 UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivi... 173 2e-41 UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protei... 172 3e-41 UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistip... 172 3e-41 UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydroge... 172 4e-41 UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=E... 172 4e-41 UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerot... 172 5e-41 UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharo... 171 6e-41 UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Ta... 171 6e-41 UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalob... 171 6e-41 UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax... 171 8e-41 UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable... 170 1e-40 UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Aceto... 170 1e-40 UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarch... 170 1e-40 UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Maripro... 170 1e-40 UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxie... 170 2e-40 UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseud... 170 2e-40 UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macroco... 170 2e-40 UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 170 2e-40 UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aerom... 170 2e-40 UniRef50_Q46HP5 DNA polymerase III, delta prime subunit n=2 Tax=... 169 3e-40 UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) ... 169 3e-40 UniRef50_Q1AUM0 DNA polymerase III, delta prime subunit n=1 Tax=... 169 3e-40 UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=... 169 4e-40 UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=... 169 4e-40 UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=... 169 4e-40 UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 168 5e-40 UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytoz... 168 5e-40 UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=V... 168 6e-40 UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothi... 168 8e-40 UniRef50_B1IBA3 DNA polymerase III subunit delta n=36 Tax=Strept... 167 8e-40 UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazo... 167 8e-40 UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n... 167 8e-40 UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candida... 167 1e-39 UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Euk... 167 1e-39 UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 167 1e-39 UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n... 167 1e-39 UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Ricket... 167 2e-39 UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM 167 2e-39 UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=... 166 2e-39 UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuni... 166 2e-39 UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root... 166 2e-39 UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevot... 166 3e-39 UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 ... 166 3e-39 UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=E... 165 3e-39 UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax... 165 5e-39 UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=... 165 6e-39 UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Ta... 165 7e-39 UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=... 164 7e-39 UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sph... 164 8e-39 UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevi... 164 1e-38 UniRef50_B8FY25 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 164 1e-38 UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrog... 164 1e-38 UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 164 1e-38 UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alterom... 164 2e-38 UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bi... 163 2e-38 UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=... 163 2e-38 UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3... 163 2e-38 UniRef50_B2S5K7 Replication factor C conserved domain protein n=... 163 2e-38 UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=T... 162 3e-38 UniRef50_Q2QTM2 Expressed protein n=7 Tax=Poaceae RepID=Q2QTM2_O... 162 3e-38 UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepI... 162 4e-38 UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=... 162 4e-38 UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=... 162 4e-38 UniRef50_Q3M1H0 DNA polymerase III, delta prime subunit n=2 Tax=... 162 4e-38 UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=... 162 6e-38 UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax... 161 6e-38 UniRef50_B3T464 Putative ATPase family associated with various c... 161 6e-38 UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=... 161 8e-38 UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysini... 161 9e-38 UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Ta... 161 9e-38 UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostri... 160 1e-37 UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax... 160 2e-37 UniRef50_Q31HQ8 DNA polymerase III, delta prime subunit n=1 Tax=... 160 2e-37 UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa ... 160 2e-37 UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=... 160 2e-37 UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces ... 160 2e-37 UniRef50_B9QRU5 Putative uncharacterized protein n=1 Tax=Labrenz... 160 2e-37 UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5... 160 2e-37 UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=... 159 2e-37 UniRef50_C2KTQ5 Possible DNA polymerase III subunit delta' n=2 T... 159 3e-37 UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepI... 159 3e-37 UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Ta... 159 3e-37 UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacte... 159 4e-37 UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , ... 159 4e-37 UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=... 158 6e-37 UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacter... 158 6e-37 UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bact... 158 6e-37 UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=... 157 9e-37 UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=P... 157 9e-37 UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronob... 157 9e-37 UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=... 157 9e-37 UniRef50_Q5UP47 Putative replication factor C small subunit L499... 157 9e-37 UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=... 157 1e-36 UniRef50_Q01Q28 DNA polymerase III, delta prime subunit n=1 Tax=... 157 1e-36 UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1... 157 1e-36 UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alpha... 157 1e-36 UniRef50_B0JX76 DNA polymerase III delta prime subunit n=19 Tax=... 157 1e-36 UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genom... 157 1e-36 UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliiv... 157 1e-36 UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA 157 1e-36 UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=... 157 2e-36 UniRef50_Q3IHC2 Putative DNA polymerase III delta' subunit n=2 T... 156 3e-36 UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ... 155 3e-36 UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=... 155 4e-36 UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=... 155 4e-36 UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like prote... 155 5e-36 UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Ente... 155 5e-36 UniRef50_A8LF28 DNA-directed DNA polymerase n=10 Tax=Actinomycet... 155 5e-36 UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH 155 6e-36 UniRef50_B8GWH2 DNA polymerase III, delta' subunit n=7 Tax=Caulo... 155 6e-36 UniRef50_B6AL71 DNA polymerase III n=2 Tax=Leptospirillum sp. Gr... 154 7e-36 UniRef50_Q1YNM8 DNA polymerase III, delta prime subunit domain p... 154 8e-36 UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, ... 154 8e-36 UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit... 154 9e-36 UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 154 1e-35 UniRef50_A4CAL1 Putative DNA polymerase III delta' subunit n=1 T... 154 1e-35 UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n... 154 1e-35 UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=... 154 1e-35 UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=G... 154 1e-35 UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospiri... 154 1e-35 UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobi... 153 2e-35 UniRef50_Q045U3 DNA replication ATPase n=8 Tax=Lactobacillus Rep... 153 2e-35 UniRef50_A0NSR3 DNA polymerase III subunit delta' n=2 Tax=Rhodob... 153 2e-35 UniRef50_Q7NKP5 DNA polymerase III delta prime subunit n=1 Tax=G... 153 2e-35 UniRef50_C9RIN8 AAA ATPase n=1 Tax=Fibrobacter succinogenes subs... 152 3e-35 UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteur... 152 3e-35 UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=... 152 4e-35 UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryo... 152 4e-35 UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggreg... 152 5e-35 UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=... 152 5e-35 UniRef50_B9TJX7 Putative uncharacterized protein n=1 Tax=Ricinus... 152 6e-35 UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylo... 151 6e-35 UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=... 151 6e-35 UniRef50_A7VYT2 Putative uncharacterized protein n=1 Tax=Clostri... 151 9e-35 UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=... 151 9e-35 UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemell... 150 1e-34 UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=... 150 1e-34 UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_... 150 1e-34 UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavob... 150 1e-34 UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepI... 150 2e-34 UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis R... 150 2e-34 UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukar... 150 2e-34 UniRef50_C8WFU3 DNA-directed DNA polymerase n=4 Tax=Sphingomonad... 150 2e-34 UniRef50_Q8DLH4 DNA polymerase III delta prime subunit n=1 Tax=T... 149 2e-34 UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=... 149 3e-34 UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacte... 149 3e-34 UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit... 149 3e-34 UniRef50_Q1H170 DNA polymerase III, delta prime subunit n=1 Tax=... 149 4e-34 UniRef50_C8V679 Subunit of heteropentameric Replication factor (... 149 4e-34 UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepI... 149 5e-34 UniRef50_C6XJM3 DNA polymerase III subunit delta' n=1 Tax=Hirsch... 148 5e-34 UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured ... 148 6e-34 UniRef50_B1CBF2 Putative uncharacterized protein n=1 Tax=Anaerof... 148 7e-34 UniRef50_A5GP04 DNA polymerase III delta prime subunit n=13 Tax=... 148 8e-34 UniRef50_Q2RTP3 DNA polymerase III, delta prime subunit n=2 Tax=... 148 8e-34 UniRef50_A3UCJ6 DNA polymerase III, delta prime subunit n=1 Tax=... 147 9e-34 UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication fac... 147 1e-33 UniRef50_Q2JV00 DNA polymerase III, delta' subunit n=2 Tax=Synec... 147 1e-33 UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q... 147 2e-33 UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinom... 147 2e-33 UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 ... 147 2e-33 UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizob... 146 2e-33 UniRef50_A0LWD2 DNA polymerase III, delta prime subunit n=6 Tax=... 146 3e-33 UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytoz... 146 3e-33 UniRef50_D0L216 DNA-directed DNA polymerase n=1 Tax=Halothiobaci... 146 3e-33 UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like prote... 145 4e-33 UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 ... 145 5e-33 UniRef50_A5WF95 DNA polymerase III, delta prime subunit n=1 Tax=... 145 7e-33 UniRef50_A7INF3 DNA-directed DNA polymerase n=2 Tax=Xanthobacter... 145 7e-33 UniRef50_B0U3X0 DNA-directed DNA polymerase n=23 Tax=Xanthomonad... 144 9e-33 UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole geno... 144 1e-32 UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacter... 144 1e-32 UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterob... 143 1e-32 UniRef50_UPI00016A2E07 DNA polymerase III subunit delta'''' n=1 ... 143 1e-32 UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister in... 143 1e-32 UniRef50_D2RCC6 DNA polymerase III, delta' subunit family protei... 143 2e-32 UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsu... 143 2e-32 UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=T... 143 2e-32 UniRef50_A0Z287 DNA polymerase III subunit delta n=1 Tax=marine ... 143 2e-32 UniRef50_C6QCX8 ATPase involved in DNA replication n=1 Tax=Hypho... 143 2e-32 UniRef50_B1ZIW3 DNA-directed DNA polymerase n=9 Tax=Alphaproteob... 143 2e-32 UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma ... 143 3e-32 UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Ta... 142 3e-32 UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=... 142 3e-32 UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=... 142 3e-32 UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Paste... 142 4e-32 UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia ... 142 4e-32 UniRef50_A4BDY7 DNA polymerase III subunit delta n=1 Tax=Reineke... 142 4e-32 UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n... 142 4e-32 UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 ... 142 6e-32 UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-... 141 7e-32 UniRef50_B0C2T4 DNA polymerase III, delta prime subunit n=1 Tax=... 141 9e-32 UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=... 140 1e-31 UniRef50_A5IBP2 DNA polymerase III, delta prime subunit n=5 Tax=... 140 1e-31 UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bactero... 140 1e-31 UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine ... 140 2e-31 UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia ... 140 2e-31 UniRef50_D0WK13 Putative DNA polymerase III, delta' subunit n=1 ... 139 2e-31 UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonprote... 139 3e-31 UniRef50_D1REQ3 Putative DNA polymerase III delta prime subunit ... 139 3e-31 UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB 139 4e-31 UniRef50_B9ZR24 DNA-directed DNA polymerase n=1 Tax=Thioalkalivi... 138 4e-31 UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A... 138 4e-31 UniRef50_B1Y019 DNA polymerase III, delta prime subunit n=3 Tax=... 138 5e-31 UniRef50_Q04WF8 DNA polymerase III gamma and tau subunits n=5 Ta... 138 6e-31 UniRef50_B8HXU0 DNA polymerase III, delta prime subunit n=10 Tax... 138 6e-31 UniRef50_C1A9U0 DNA polymerase III delta' subunit n=1 Tax=Gemmat... 138 6e-31 UniRef50_C2BUI4 DNA polymerase III, delta prime subunit n=1 Tax=... 138 8e-31 UniRef50_D1BLN8 DNA polymerase III gamma/tau subunits-like prote... 138 9e-31 UniRef50_Q12AK7 DNA-directed DNA polymerase n=5 Tax=Comamonadace... 137 1e-30 UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus... 137 1e-30 UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=... 137 1e-30 UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprino... 137 2e-30 UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus ... 137 2e-30 UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA2... 137 2e-30 UniRef50_B3QKH2 DNA polymerase III subunit delta' n=14 Tax=Brady... 137 2e-30 UniRef50_A8TUR1 ATPase involved in DNA replication n=1 Tax=alpha... 136 2e-30 UniRef50_Q5UQ72 Putative replication factor C small subunit L510... 136 3e-30 UniRef50_B8ELC5 AAA ATPase n=2 Tax=Beijerinckiaceae RepID=B8ELC5... 135 4e-30 UniRef50_B7KMR1 DNA polymerase III delta prime subunit n=1 Tax=C... 135 4e-30 UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=... 135 4e-30 UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=... 135 5e-30 UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=P... 135 5e-30 UniRef50_A9INK7 DNA polymerase III, delta' subunit n=11 Tax=Burk... 135 7e-30 UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like prote... 135 7e-30 UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusob... 134 8e-30 UniRef50_Q1NDV9 DNA polymerase III delta prime subunit n=1 Tax=S... 134 9e-30 UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like prote... 134 9e-30 UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri Rep... 134 9e-30 UniRef50_A4MZJ7 DNA polymerase III subunits gamma and tau n=1 Ta... 134 1e-29 UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Ta... 134 1e-29 UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrio... 134 1e-29 UniRef50_B8DVL4 Possible DNA polymerase III delta prime subunit ... 134 1e-29 UniRef50_Q0FAY2 DNA polymerase III subunit delta n=1 Tax=Rhodoba... 133 2e-29 UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=... 133 2e-29 UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD 133 2e-29 UniRef50_UPI000196B9A7 hypothetical protein CATMIT_00793 n=1 Tax... 133 2e-29 UniRef50_Q5FUU7 DNA polymerase III delta prime subunit DnaC n=1 ... 133 2e-29 UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleospori... 133 2e-29 UniRef50_C8P224 DNA polymerase III, delta prime subunit n=1 Tax=... 133 2e-29 UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 ... 132 4e-29 UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales ... 132 5e-29 UniRef50_Q4MV26 DNA polymerase III, gamma and tau subunits n=2 T... 132 5e-29 UniRef50_Q048X0 DNA replication ATPase n=20 Tax=Lactobacillus Re... 132 5e-29 UniRef50_C8PYS8 DNA-directed DNA polymerase n=1 Tax=Enhydrobacte... 132 5e-29 UniRef50_A9BCY6 DNA polymerase III, delta prime subunit n=1 Tax=... 132 6e-29 UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBU... 131 6e-29 UniRef50_UPI0001C42946 DNA polymerase III subunits gamma and tau... 131 7e-29 UniRef50_Q7VE62 ATPase involved in DNA replication n=1 Tax=Proch... 131 1e-28 UniRef50_A2BNS3 DNA polymerase III, delta prime subunit n=7 Tax=... 130 1e-28 UniRef50_C8WQK9 DNA polymerase III gamma/tau subunits-like prote... 130 2e-28 UniRef50_C7LJZ2 Putative DNA polymerase III, delta prime subunit... 130 2e-28 UniRef50_Q5QZ33 DNA polymerase III, delta prime subunit, ATPase ... 129 3e-28 UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Eurya... 129 3e-28 UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, ... 129 3e-28 UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota Re... 129 4e-28 UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-lik... 128 5e-28 UniRef50_B4U6Y4 DNA polymerase III delta' subunit n=1 Tax=Hydrog... 128 5e-28 UniRef50_C9KPY4 Replication-associated recombination protein A n... 128 5e-28 UniRef50_C9R585 DNA polymerase III subunit tau n=1 Tax=Aggregati... 128 5e-28 UniRef50_B4DAI3 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 128 6e-28 UniRef50_A3WR60 DNA polymerase III subunits gamma and tau n=1 Ta... 128 6e-28 UniRef50_Q5UQ47 Putative replication factor C small subunit R395... 128 7e-28 UniRef50_D2MMU8 Conserved domain protein n=1 Tax=Bulleidia extru... 128 8e-28 UniRef50_Q043K3 Helicase subunit of the Holliday junction resolv... 127 1e-27 UniRef50_B9KAJ9 DNA polymerase III, gamma subunit-related protei... 127 1e-27 UniRef50_Q7V4G3 DNA polymerase III, delta prime subunit n=2 Tax=... 127 1e-27 UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4... 127 1e-27 UniRef50_A0A7T3 HolB-like ATPase involved in DNA replication n=1... 127 1e-27 UniRef50_C4FVD1 Putative uncharacterized protein n=1 Tax=Catonel... 127 1e-27 UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=... 127 1e-27 UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-lik... 127 2e-27 UniRef50_A5CPG9 DNA polymerase III, delta' subunit n=7 Tax=Actin... 127 2e-27 UniRef50_Q5FHH2 DNA polymerase III subunit gamma n=5 Tax=canis g... 127 2e-27 UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax... 126 2e-27 UniRef50_A4A8H5 DNA polymerase III, delta prime subunit n=1 Tax=... 126 2e-27 UniRef50_Q3AG11 Putative DNA polymerase III, delta prime subunit... 126 3e-27 UniRef50_Q081I0 DNA polymerase III, delta prime subunit n=14 Tax... 126 3e-27 UniRef50_C7CMJ3 Putative uncharacterized protein n=1 Tax=Methylo... 126 3e-27 UniRef50_A5EXC7 DNA polymerase III, delta' subunit n=1 Tax=Diche... 125 4e-27 UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campyl... 125 5e-27 UniRef50_A6D7X6 DNA polymerase III subunit delta' n=1 Tax=Vibrio... 125 5e-27 UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacter... 125 6e-27 UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ... 125 7e-27 UniRef50_Q0AIK8 DNA polymerase III, delta prime subunit n=2 Tax=... 125 8e-27 UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Ta... 124 8e-27 UniRef50_Q2NAF5 DNA polymerase III delta prime subunit n=4 Tax=S... 124 9e-27 UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacte... 124 1e-26 UniRef50_A1B3Z3 DNA polymerase III, delta prime subunit n=1 Tax=... 124 1e-26 UniRef50_C6NVZ6 DNA polymerase III delta prime subunit n=1 Tax=A... 123 1e-26 UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepI... 123 2e-26 UniRef50_Q1IW28 DNA polymerase III subunit, putative n=3 Tax=Dei... 123 2e-26 UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archae... 123 2e-26 UniRef50_Q1QBV7 DNA polymerase III, delta prime subunit n=2 Tax=... 123 2e-26 UniRef50_C7HUG1 DNA polymerase III, delta prime subunit n=1 Tax=... 123 3e-26 UniRef50_A3WQJ1 DNA polymerase III, delta prime subunit, ATPase ... 123 3e-26 UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH... 123 3e-26 UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU 122 3e-26 UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696... 122 3e-26 UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organi... 122 3e-26 UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Metha... 122 4e-26 UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacill... 122 6e-26 UniRef50_C4KND2 DNA polymerase III subunit delta' n=58 Tax=Betap... 121 8e-26 UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacter... 121 8e-26 UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB 121 9e-26 UniRef50_C7RD89 DNA polymerase III gamma/tau subunits-like prote... 121 9e-26 UniRef50_A1WGM6 DNA-directed DNA polymerase n=10 Tax=Comamonadac... 121 1e-25 UniRef50_B2JGP8 DNA polymerase III, delta prime subunit n=27 Tax... 121 1e-25 UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria... 120 1e-25 UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta R... 120 1e-25 UniRef50_B9KI78 DNA polymerase III subunit gamma n=6 Tax=Anaplas... 120 1e-25 UniRef50_Q0C177 Putative DNA polymerase III, delta prime subunit... 120 1e-25 UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyo... 120 2e-25 UniRef50_Q254L7 DNA polymerase III gamma/tau n=4 Tax=Chlamydophi... 120 2e-25 UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID... 120 2e-25 UniRef50_C2L0X2 Possible DNA-directed DNA polymerase n=1 Tax=Ori... 120 2e-25 UniRef50_B6W8Q3 Putative uncharacterized protein n=1 Tax=Anaeroc... 120 3e-25 UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1... 119 3e-25 UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepI... 119 4e-25 UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchne... 119 4e-25 UniRef50_UPI00016998CE DNA polymerase III, delta prime subunit n... 118 4e-25 UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacte... 118 5e-25 UniRef50_Q3EP45 DNA polymerase III, delta' subunit n=4 Tax=Bacil... 118 5e-25 UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 T... 118 6e-25 UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms R... 118 8e-25 UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria Rep... 118 1e-24 UniRef50_C7ND46 ATPase and helicase subunits involved in DNA rep... 117 1e-24 UniRef50_C6BRT3 DNA polymerase III, delta prime subunit, putativ... 117 1e-24 UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Prote... 117 1e-24 UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsul... 117 1e-24 UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria Rep... 117 1e-24 UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Metha... 117 1e-24 UniRef50_Q6E6C3 Replication factor C activator 1 37kDa subunit (... 117 1e-24 UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1... 117 1e-24 UniRef50_P0AAZ6 Replication-associated recombination protein A n... 117 1e-24 UniRef50_A6GP69 DNA-directed DNA polymerase n=1 Tax=Limnobacter ... 117 2e-24 UniRef50_C0R3P0 DNA polymerase III, delta' subunit, putative n=6... 117 2e-24 UniRef50_Q4E7S4 DNA polymerase III delta prime chain (Fragment) ... 117 2e-24 UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bact... 116 3e-24 UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultu... 116 3e-24 UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopob... 116 3e-24 UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID... 115 4e-24 UniRef50_C1XWF5 Putative uncharacterized protein n=2 Tax=Meiothe... 115 4e-24 UniRef50_B2UPH2 DNA polymerase III delta' subunit n=1 Tax=Akkerm... 115 5e-24 UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase ... 115 6e-24 UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ... 115 6e-24 UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax... 115 6e-24 UniRef50_C2HFQ5 DNA polymerase III delta subunit n=2 Tax=Finegol... 115 8e-24 UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria Rep... 114 9e-24 UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5... 114 9e-24 UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosa... 114 1e-23 >UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enterobacteriaceae RepID=DPO3X_ECOLI Length = 643 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 643/643 (100%), Positives = 643/643 (100%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA Sbjct: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH Sbjct: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ Sbjct: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA Sbjct: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA Sbjct: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL Sbjct: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI Sbjct: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 >UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 Tax=Enterobacteriaceae RepID=D0ZED4_EDWTE Length = 689 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 445/652 (68%), Positives = 513/652 (78%), Gaps = 9/652 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 38 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 97 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDL+EIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 98 GLNCETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRF 157 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQFHL+ALD Sbjct: 158 KVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLRALDH 217 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR QLE I + E + EPRALQLLARAAEGS+RDALSLTDQAIA G GQ++ AVS M Sbjct: 218 EQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAMGQGQITADAVSQM 277 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDD+Q L+L+EA+ A+G VMA + +AA RG++WE LLVEML LLHR+AM+QL P+ Sbjct: 278 LGTLDDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENLLVEMLALLHRVAMLQLLPS 337 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + AA+E R+RELAR +PP D+QL+YQ LL GRKEL +APDRRMGVEMTLLRALAFH Sbjct: 338 ALDSQFAAVEPRLRELARMLPPADLQLFYQILLNGRKELAFAPDRRMGVEMTLLRALAFH 397 Query: 361 PRM----PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV----PLPETTSQV 412 P+ P P P + P P V P P + +PE+T+Q+ Sbjct: 398 PKAVIAEPSPAPSAAQGGDIPAVPATVAQRVAPPSPATVPPTVSAPPQAASAVPESTAQL 457 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 L AR +L++ K AA + ++ALERLAS+++R Q + + E+A + Sbjct: 458 LQARSRLRQKAAGGSEPKKSEPAAPQRAQPASSALERLASISERGQQKIASAEQEQASTR 517 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 KEAYRWKA +++K TPKAL+ ALEHEKTPELAA LA E++ RD WA ++SQL L Sbjct: 518 KEAYRWKAQNRPVEEKAPKTTPKALRSALEHEKTPELAAHLAQESLTRDAWAQELSQLRL 577 Query: 533 PKLVEQVALNAWKEESD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 PKLV+Q+ALNA++E + +V LHLRS+QRHLN+ A+Q L +ALS G V L+IVED Sbjct: 578 PKLVQQLALNAFREPAPEGSVLLHLRSAQRHLNSASARQTLEQALSDHYGHPVALSIVED 637 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D+P RTPLEWRQAIYEE+LAQAR SI AD NIQTLRR FDAELDEESIRP+ Sbjct: 638 DDPQRRTPLEWRQAIYEERLAQARASIAADGNIQTLRRLFDAELDEESIRPV 689 >UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=4 Tax=Gammaproteobacteria RepID=A1U128_MARAV Length = 637 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 276/642 (42%), Positives = 356/642 (55%), Gaps = 11/642 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF D+VGQEHVL AL + L R+HHAYLF+GTRGVGKT+I RLLA+ Sbjct: 1 MSYQVLARKWRPRTFEDMVGQEHVLQALIHALEHQRLHHAYLFTGTRGVGKTTIGRLLAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT PCG CD+C+EI + RFVDLIEIDAASRT V+D R+L DNVQYAP RGR+ Sbjct: 61 CLNCETGITPNPCGECDSCKEILENRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHML+ SFNA LKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L+H+L EE I E AL LLARAA+GS+RDALSLTDQAIA G+ ++ VS M Sbjct: 181 EHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSLTDQAIAFGNENLAASDVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +V A+VE +G +++ IN + ++ +L +ML L HR+ M Q+ P Sbjct: 241 LGTIDQRDIQRIVNALVERDGPGLLSEINRISDFAPDYGVILSDMLSLFHRVTMEQVVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N M +++ELAR + D QL+YQT LIGRK+L PD RMG EMTLLR LAF Sbjct: 301 SADNAMGDA-AQVQELARRLSAEDAQLFYQTALIGRKDLSVTPDARMGFEMTLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P EP P + +P+ P + Q Sbjct: 360 PGTDRREP--------PALVSGNSNNGTAESEPEPGPVSQTASTQAVAAAPQPEPAPQPV 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + +P P A + + P + + A + A Sbjct: 412 PSPEPVAELEPQPPMVDDPPPWEPEDYGVQAESPEWQEPVPQSDSSIEPDASAISEPESA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 PV V + + +AL +E A + W L + + +A Sbjct: 472 PEPVSASDPVQSE-QNAGQALVNEPELAPAEPEQPVTADGFVWERDFRSLGITGMPGNLA 530 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + AV L L L N ++K+ AL G +L I + P + TP Sbjct: 531 SYSSMRMEGQAVVLTLDEGHARLLNARHEEKILAALRSRFGDATQLKIEQG-VPGLHTPA 589 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + + + A ESI D ++++ F+ + EESIRP Sbjct: 590 AFEERQRAARQKAAEESIRQDPLVKSIVERFEGRVVEESIRP 631 >UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=8 Tax=Gammaproteobacteria RepID=Q21L32_SACD2 Length = 690 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 288/688 (41%), Positives = 393/688 (57%), Gaps = 49/688 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF +++GQEHVL AL N L GR+HHAYLF+GTRGVGKTSIAR+LAK Sbjct: 1 MSYQVLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+++ PCG C C EI +GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCETGVSSEPCGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 KIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L HIL +E I E AL LAR+A+GS+RDALSLTDQ+I+ G G+VS V++M Sbjct: 181 ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +LV A++ +G +++ + + A +++ L +++ LLHRIA+ Q P Sbjct: 241 LGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLLHRIAIAQALPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N ++ E A + P D+QL+YQT LIGR++L +PD R G EMTLLR LAF Sbjct: 301 ALDNSYGD-RTQILEFASKLAPEDVQLFYQTALIGRRDLSLSPDPRSGFEMTLLRMLAFK 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAV--------------------MTPTQVPPQPQSAPQQA 400 P+ P Q+ AP + + + P + Q Sbjct: 360 PQGVADVPTQRLQAQPASAPASSSDVASVAAPAAPTAQAAPQPSSNVEPAPAQAAPEQTE 419 Query: 401 PTVPLPETTSQVLAAR----------------QQLQRVQGATKAKKSEPAAATRARPVNN 444 P+ P + Q A + Q K ++EP A P + Sbjct: 420 PSPPAQTSPPQQNVAPNTVEDNSPPADYYDNMPPYEEAQEPVKKPQAEPQQAQAEVPASE 479 Query: 445 AAL----ERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKA 500 A + + + QA P APAK A + + KE ++ P + Sbjct: 480 PAPLGPMHTVVTAAESTQAVAEPEVNTSAPAKTPADALREQVKAIVGKEGISAPPKPAQQ 539 Query: 501 LEHEK------TPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVC 553 L++ P + ++ E + W + +QL++ +++ A N DN + Sbjct: 540 LKNTPAAPINAAPVVTTPISLEELTPSHWVSVYNQLNVKGILQSTAANTVLIGREDNHLD 599 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA-VRTPLEWRQAIYEEKLA 612 L + L + +L+ LS G ++ I + P + TP + I +EK Sbjct: 600 FALDEQKSSLFDPSHSDRLSALLSDYFGVPIKAAIHLQNLPGDLETPAAYAIRIDQEKRV 659 Query: 613 QARESIIADNNIQTLRRFFDAELDEESI 640 A +++ D +QTL++ F+A L EE++ Sbjct: 660 AAIQNMYDDPVVQTLQQQFNATLVEETV 687 >UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 Tax=Pasteurellaceae RepID=A6VMZ2_ACTSZ Length = 699 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 327/704 (46%), Positives = 433/704 (61%), Gaps = 66/704 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F V+GQEH+LTALANGL R+HHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQNFHQVIGQEHILTALANGLKENRLHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE G F+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCIHGVTAEPCGECEHCKAIENGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L +IL +E I EP AL +A+AA+GS+RD+LSLTDQAIA + + V+ M Sbjct: 181 QQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIAMSNADIRVDVVNIM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+Q + ++ A+ + NGE++M I A G +W+ LL+E+ LH+IAM+QL P Sbjct: 241 LGLLDDNQPIEILYALHQGNGEKLMQGIQAVADNGADWDELLIEVGEALHQIAMLQLLPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + E ++ LA+ I P +IQ +YQ + +GRKEL +AP+RR+G EMTLLRALAFH Sbjct: 301 RI-----DEESQLGFLAKHISPENIQFFYQIVTMGRKELAFAPNRRIGAEMTLLRALAFH 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP----------------QSAPQQAPTVP 404 P+ EP + + + + + PQ+ + P Sbjct: 356 PKFSRAEPAEHQVNSTVQDSARAHPEKESAVKKTINLVEMPVYNQHLRVSATPQREQSPP 415 Query: 405 ---LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAAL-------------- 447 ++TS L A Q++R++ + ++ S +P Sbjct: 416 GNLSGKSTSNALNALAQIERLRASVRSAASTEEKTGFEQPQPAVQAHELPVVSMPQKERP 475 Query: 448 -----ERLASVTDRVQARPVPSALEKAPAK--------------------KEAYRWKATT 482 +RLAS+ + Q P+ K+ +K E YRW+ Sbjct: 476 QTDLIDRLASLAQQAQDNLNPAVKRKSVSKPVSDSTQETENEDDSDDANLAETYRWEWIN 535 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP--KLVEQVA 540 P M + E V P +K+A+ EKTPEL K+ A A ERD W V L L KLV+Q+A Sbjct: 536 PEMAEAENVIRPSEIKQAILKEKTPELVKKVIALAEERDDWTKTVEHLGLDHLKLVKQIA 595 Query: 541 LNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 LN+ ++D+ + L LRS+Q+HL A + L AL + G + L I +D+ TP Sbjct: 596 LNSVILAQTDSEIVLGLRSNQKHLQRESAIEALQAALKVYYGKDLRLKIELNDDERRPTP 655 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 L++R+ IY E +AR+ + AD ++ L++ FDA LD +SIRP+ Sbjct: 656 LDYRRQIYHELSERARQDLQADKKVKLLQQAFDAHLDLDSIRPV 699 >UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q0A8H8_ALHEH Length = 648 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 279/647 (43%), Positives = 360/647 (55%), Gaps = 12/647 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+++ GQEHVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MAYQVLARKWRPRTFSEMAGQEHVLRALVNALEQQRLHHAYLFTGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TA PCG CD CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVTAEPCGTCDACRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLPG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L ++ +E +A EP+AL L +AA+GS+RDALSL DQAIA G G V V AM Sbjct: 181 GLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLLDQAIAFGAGAVREDEVCAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D L +EA+ +G ++A+ + R ++ L E+L LH++A++Q+ P Sbjct: 241 LGTIDRGFVLEALEALAAGDGRALLAVTARMSERAPDFSDALDELLHCLHQLALLQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL R+R+LA +P D+QLYYQ L GR++LP AP+ R G EM LLR LAF Sbjct: 301 ALPAGDPDA-DRLRDLAARLPAEDVQLYYQIALNGRRDLPLAPEGRTGFEMVLLRMLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ----QAPTVPLPETTSQVLAAR 416 P A +P + P+ +PT + A Sbjct: 360 PVTGTAVAATGGAGADAPPAAAAGSPRSQAAPKATRPRREAHPSPTPTERAEPAAAPAGG 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 G + A R + V + E A + Sbjct: 420 SPPPEQGGGLGGYREALMRAARGQAVEPDGPAPAPADPSAAAEPAPAGGREPAAGLTDPP 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 W PV ++ P + E PE A A I + W + L L + Sbjct: 480 AWAEGPPVSDEEP----PPIGAQPAAAETAPETTAPDDA-GITPETWPWRARDLPLDGAL 534 Query: 537 EQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 Q A + W E + V L L S L + +LA+ L G V L + ++P Sbjct: 535 RQFAAHCEWVGEEEGRVILRLDSGHGMLRTPALEAELAQVLGDYLGRAVRLDVRL-ESPH 593 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TP + E+L ARES+ D N+ L + F AEL +++RP Sbjct: 594 RDTPATVARRERAERLRAARESLENDPNVARLHQRFGAELLPDTVRP 640 >UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pasteurellaceae RepID=DPO3X_HAEIN Length = 688 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 320/693 (46%), Positives = 425/693 (61%), Gaps = 55/693 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQEH++TALANGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TATPCG C+NC+ IEQG F+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLKALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L HIL +E+I E AL LA+AA+GS+RD+LSLTDQAIA GD QV+ VS M Sbjct: 181 TQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+ ++ ++ A+ + NGE +M + A +W+ LL E LH+IA++QL P Sbjct: 241 LGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + LA+ I P ++Q +YQ ++ GRK+L AP+RR+G EMTLLRALAFH Sbjct: 301 K----SSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFH 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQV---PPQPQSAPQQAPTVPLPETTS------- 410 P+ P+ P + + + T P + + A + P TS Sbjct: 357 PKFLTAVPKANTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAYSQAKPNKTSIPNLASL 416 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPV-------NNAALERLASVTDRVQARPVP 463 L A + L +++ + + + A + + + +++ ++ R P P Sbjct: 417 SALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKP 476 Query: 464 SALEKAPAKKEA--------------------------------YRWKATTPVMQQKEVV 491 +EK A YRW+ + P + + + Sbjct: 477 KHIEKPTLPSNAAQAPQKNSTEENSSDDNVEIAQDEQEILSADTYRWEWSNPELAKADTG 536 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDN 550 P +K+A+ + TPEL K+ + ++D WA V + L +++ALN + + ++D+ Sbjct: 537 VCPSDIKQAILKDITPELRLKIITQTQQQDQWADIVERSGLTGFSKELALNCFLQSKTDD 596 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 + L L S + HL + + LAEALS L+G + LTI DD+ V TP+E+R+ IY+ Sbjct: 597 EINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLDDS-NVTTPIEYRRNIYQAL 655 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +A+ + D+ +Q L FDA+LD ESIRP+ Sbjct: 656 REKAQNELQKDSKLQILLNEFDAKLDVESIRPV 688 >UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB0_9GAMM Length = 647 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 362/649 (55%), Gaps = 9/649 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FA++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPRIFAEMAGQQHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GRF+DLIE+DAASRT V+D R+LLDNVQYAP+RGR+ Sbjct: 61 CLNCEVGVSSVPCGECSSCTEIGEGRFIDLIEVDAASRTGVDDMRELLDNVQYAPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+ SF ALLKTLEEPP HVKFL ATTDPQKLP+T+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSRCLQFNLKNLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L+ +L EE + E AL LARAA+GS+RDALSLTDQAI G GQV+ VSAM Sbjct: 181 ERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSLTDQAIGHGGGQVNEGEVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + + +A++ +G ++A I A + +++A L ++L + H++A+VQ P Sbjct: 241 LGTIERSYVVDICQALISGSGTELLAAIGRMAEQAPDYDAALTDILSVWHQVAIVQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +A + LA + D QL+YQ L+GRK+L +PD + G EM +LRALAF Sbjct: 301 ALDKGVANYTE-LLALAAAVSREDTQLFYQICLLGRKDLQLSPDAKSGFEMVMLRALAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV-----PLPETTSQVLAA 415 P+ P+ A AV P +V P + V PL V A Sbjct: 360 PQTSAQVGSGPKAVAKAQASAAVAPPLEVEPSGKKPEAVVTAVVDDRPPLEPAVEAVAEA 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + A EP A + + V ++ A + Sbjct: 420 VSAPESTVKPVTAAPVEPTAQLVVESPVEVYQKSVQPTGYDGVQEAVQKTVDGAVGQPIE 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T ++ P + L+ + A + E D W QLS+ Sbjct: 480 ETVDETIKETIEEASE-KPSQERTPLQTPEAAPAPAPIPLERFTPDNWIQLRRQLSIGAS 538 Query: 536 VEQVALNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + ++A + S + + S L + Q++ +EALS V + I Sbjct: 539 LGEIASHCLYLGRSGQQLNFLIDSDHNSLYDEPHQEQFSEALSDYFQQPVTVDITLG-VA 597 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E+L +A +S+ D + ++ FD ELDE S+RPI Sbjct: 598 EKETPRAATTREKAERLVEAVDSLNQDPAVVKFKQLFDGELDERSVRPI 646 >UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fischeri RepID=B5FFM6_VIBFM Length = 709 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 312/712 (43%), Positives = 402/712 (56%), Gaps = 72/712 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ E RAL L+A AA+GS+RDALSLTDQAIA G+G V+ + VSAM Sbjct: 181 DQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIALGNGSVTAEIVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M +N+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ +L RK+LP AP+ R G EM LLR +AF Sbjct: 301 TLDKTQPDA-ERIELLSTQLSPQEVQLFYQIVLQSRKDLPLAPNERTGAEMMLLRMVAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P P AP P T+ Q +QQ Q Sbjct: 360 PVHAQALEAQPIAVPSTEPQAINTAPRVQQQAPSVPANVAPQAQRPMTSQQRPTMQQQTQ 419 Query: 421 R--VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP-------- 470 + SE A P+ + E + + + P AP Sbjct: 420 QGHAPANVPPMHSEQPPMYDAPPMGTPSGESASQAPQQSSSAQPPMQETPAPRSGLLGVR 479 Query: 471 --------------------------------------AKKEAYRWKATT----PVMQQK 488 + A R + + ++K Sbjct: 480 NQLRSAKNNLTNTGTGSKKASAASDKKKTSSVLERIAEKQHLAPRAQVSQIGNSATQEKK 539 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-----------------QLS 531 + + ++ +A+E + V L+ Sbjct: 540 PEEPYRWKSTQPEMKKVVSDVTPTKLKQALEHEKTPEMVKLLVEESSKQDTWSALAMSLT 599 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 LPKLV+Q+ LN+ E DN + LHLR++Q HLN A + + +AL+ V +TI Sbjct: 600 LPKLVQQLVLNSAFVEQDNQIKLHLRAAQSHLNGDKANELITQALTQTLNREVTITIDIS 659 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D TPLE R+ +Y+ KL A +S+ D ++ + F AE+D+ES+RPI Sbjct: 660 DEG--TTPLELREQMYQTKLQTAYQSLQQDPHVNFFIQRFGAEMDQESVRPI 709 >UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR3_9GAMM Length = 677 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 279/671 (41%), Positives = 379/671 (56%), Gaps = 32/671 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IARLLAK Sbjct: 1 MSYQVLARKWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGRF Sbjct: 61 SLNCEQGVSSKPCGQCASCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKNMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HIL E + + +L +A A+GS+RDALSLTDQAIA G G ++ Q V+AM Sbjct: 181 EHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIAFGHGALAEQEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+LV A+++ + + ++A+++E +++ LL E++ LHR+A+ Q P+ Sbjct: 241 LGTVDLKRVLNLVRALLQKDADGLLAMVSELDEHTPDYQTLLTELMSTLHRVAIAQAVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N + + LA+ DIQLYYQ + EL AP R G EMTLLR LAF Sbjct: 301 AISNHKGDRDA-IMALAKAGYAEDIQLYYQIAGKSKGELSLAPSERAGFEMTLLRMLAFS 359 Query: 361 ----------PRMPLPEPEVPRQSFAPVAPT-AVMTPTQVPPQPQSAPQQAPTVPLPET- 408 P + PE + S APV P + P +P + AP P+ E Sbjct: 360 QTPPSSIDTLPPLTTQAPETTQPSAAPVKPAVSTPEPVSIPASEEVAPDVGPSETTSEAA 419 Query: 409 -TSQVLAARQQLQRVQGATKAKKSE----PAAATRARPVNNAALERLASVTDRVQARPVP 463 S+ + A + + A +E PA+ V E VQ P P Sbjct: 420 VPSEPVNAAETPVKKTPAESVDAAEVLTQPASQPEPATVPEPVSEPEPEPEITVQEDPHP 479 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH--EKTPELAAKLAAEAIERD 521 + + E + ++ +++ P + E P+ AA+L+ A D Sbjct: 480 AGAVDTTSMLEPVAEQPPIETPTEENLLSEPDSASDPESKVVETEPQTAAELSDVATWPD 539 Query: 522 P---------WAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQK 571 W + +L L + + + ++ W+ + + L + + R + N QQ Sbjct: 540 TDLDADPVFWWQVTLHRLGLSGMTKTLFAHSQWRGYENGQLSLVISPNYRKIMNDSHQQY 599 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L +A++ LT +TP W + + +A + + AD ++TL F Sbjct: 600 LLQAITDWLPDCQSLTYEFGAV--DKTPQLWLDQLVQAANDRAYQHLKADAFVETLINEF 657 Query: 632 DAELDEESIRP 642 EL +ES P Sbjct: 658 KGELIQESAVP 668 >UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE5_METSD Length = 610 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 346/647 (53%), Gaps = 42/647 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCGVC C +I++GRFVD++E+DAAS T+V+ R+LLDN QYAP GRF Sbjct: 61 SLNCETGITAHPCGVCSACVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYAPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLSR +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+L+ + Sbjct: 121 KVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFNLRQMST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L+ +L +E+I + ALQL++RAA GS+RDALSL DQAIA G +V+ V AM Sbjct: 181 PAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIAYGGNRVNESEVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L++A++ +G +MA R + ++ L ++ LLH +A+ Q P Sbjct: 241 LGAIDQSYLYGLLDALIAQDGPSLMAQAKSMEERSLSFDTALADLAQLLHHLAVAQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ D+ + +LA +P +QLYYQ L+GR++L APD G M LLR LAF Sbjct: 301 SIPLDLPE-RTALLDLATKLPADKVQLYYQIALLGRRDLGLAPDEFAGFTMCLLRMLAF- 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P P P + + ++ A + Sbjct: 359 ------------------SNESTSKPAPTAPAPSGSDRPIAQHAGSAASALAAATMARSA 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A A P A A + E + A + + + P Sbjct: 401 TPSPAAIASPPTPQAKPVAEATMVTSNEVDVAPATAPAAATPVATVAETP---------- 450 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD---PWAAQVSQLSLPKLVE 537 + + + A P LA+ ++++ + W V +L L L Sbjct: 451 -----ADVPTHSQVSSPEPAYTAASEPTLASSPVEDSLQEEFDGNWRLLVDKLKL-GLAR 504 Query: 538 QVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 +A + + + + L + + +HL + Q+KL A+ G + L Sbjct: 505 ALAQHCELIGHTADRLELQVPEAHKHLLDPNYQEKLKAAIEAHFGRKMHLQFSIG--GGN 562 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E +QA SI D +Q L R F A++ SI+P+ Sbjct: 563 NTPAHQISQEKAELQSQAESSIQQDGFVQALMRDFGAQIIPSSIKPL 609 >UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU95_9GAMM Length = 591 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 254/644 (39%), Positives = 347/644 (53%), Gaps = 56/644 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP++F ++VGQEHVL AL N L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MTYQVLARKWRPKSFGEMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GR VDL+E+DAASRTKVEDTR+LL+NVQYAP R R+ Sbjct: 61 CLNCEQGVSSHPCGECGSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFNLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L ++L E ++ E AL LL RAA GS+RDALSLTDQAIA G G++ V +M Sbjct: 181 EQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAFGSGKLIETDVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D L+E + + ++A++ A ++E E++ ++HR+A+ Q P Sbjct: 241 LGSVDLSFVYQLLEGVAAGDPAELLAIVGRMAEHAPDFEGSTDELISMVHRVAVAQAVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N R+ LA++I D QL+YQ + G++++ APD R G EM LLR LAF Sbjct: 301 AIDNSWGDA-DRVAALAQSIGAEDAQLFYQIAINGKRDMALAPDPRSGFEMLLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E A + P + A + P P E + ++ Sbjct: 360 PAAVIDESL----GAADLQPAPLNPDQGSTAGEVGATAKKPHEPRQEAVPSIELQAPEVS 415 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + K +P+ L Sbjct: 416 PQRPTERLKPEQPSNDADPASRQAVPL-----------------------VSSPPPEVPE 452 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +TP + + +P + W +SQL L +V+ +A Sbjct: 453 STPKVTGVILEPSP--------------------------ENWPQLLSQLGLLGMVQSIA 486 Query: 541 LN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 N E + + L + L N G + K+ AL + + I + P +TP Sbjct: 487 SNMQLIEAAAGQLEFVLDTDNASLFNDGHRDKIRLALQNYLDRELSVAITVGEPPG-KTP 545 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + E+ QA E+I +D +Q L FD +LD SI P+ Sbjct: 546 AMIQAKAASERQKQAIEAIESDPRLQALITKFDGQLDRASIAPL 589 >UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxalobacter formigenes RepID=C3XBH9_OXAFO Length = 604 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 231/646 (35%), Positives = 337/646 (52%), Gaps = 45/646 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F ++VGQ+HV+ AL++ L R+HHAYLF+GTRG+GKT+++R+LAK Sbjct: 1 MSYLVLARKYRPKNFENIVGQDHVVRALSHALESQRLHHAYLFTGTRGIGKTTLSRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA+PCG+C+ C+ I+ RFVD +E+DAAS + D LL+ YAP RF Sbjct: 61 SLNCEKGITASPCGICEACKAIDSDRFVDYVEMDAASNRGIADMLQLLEQAVYAPTAARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNA+LKTLEEPPE+VKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E+I E AL+LLA+ A+GS+RDALSL DQAIA G V+ +AV M Sbjct: 181 SHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTAGHVTDEAVQDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++ + +G ++ + +E A R + + L ++ LL +IAM+Q P Sbjct: 241 LGALDQTYLIRLLDHLANRDGTSLLKVADEMAFRSLSYSTALQDLGLLLQKIAMIQSVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +D+A + + LA P ++QLYYQ + GR EL APD G MTLLR LAF Sbjct: 301 YPLDDIADSDN-LSRLAAIFSPEELQLYYQIAIHGRNELGLAPDEYAGFSMTLLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +S + + TP P Q Q + + ++ Sbjct: 360 PDK-------GNRSIPQIVSKSERTPANRPKTDSGKGQA---------VEQKVPSSPVVE 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ K + +A + + + + + + + + A + A Sbjct: 404 KIPVPEKKPEETVSAIPPWVDDESFSNQGGQTAKSPEVKKNESAPVTEVVALAMSAEMPA 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 K E W + L + +V+Q+A Sbjct: 464 -----------------------APADVPVKKNPGEGSWNGNWPELAAVLPVRGMVQQLA 500 Query: 541 LNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 E+ D+A LHL+S L +L E L+ G V++T Sbjct: 501 QQTELVHWEKKDSACVLHLKSPIATLCTPNNINRLTEVLAEHFGQPVKITTEIG--KVEE 558 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 T + E+ QA E+I D ++++ F + E S++P+ Sbjct: 559 TANQNAIEARAERQRQAEEAITNDPYVKSVIAEFGGHIVEGSVKPV 604 >UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q0VNM5_ALCBS Length = 615 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 268/643 (41%), Positives = 360/643 (55%), Gaps = 34/643 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I ++ AL L +AAEGS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSLTDQAIAFGGEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALASVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM LLR + F Sbjct: 301 -------SYDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLLLRMVLFT 353 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + +V P V + + L +T + A Sbjct: 354 P----------KGVLVQGDNPSVKKPKAVASSEEPGDKPDLRALLNKTPAAAPAPVSLPT 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + EP+ A A + P SA+ AP++ E Sbjct: 404 PASASAPVTAPEPSPTRAAPAAAEQAASADDAPPWDESPGPSTSAVAVAPSQSEPQAEPE 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 Q+ P A+ EA WAA + +L + V +A Sbjct: 464 PNQAPTQEVEPLAP---------------LAEPTNEAEVATWWAALLLRLDVDGTVRNIA 508 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L NR ++L+ AL +++ + + P TP Sbjct: 509 RNAVLISREESVWTLRISPGHQVLVNRERLEELSGALGNYFQRRIQVQVEFEQQPGA-TP 567 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E L QA++++ +D +Q L F LD+ES+ P Sbjct: 568 EVIAEARRQELLLQAKDTLHSDPVVQQLITTFGGRLDDESVTP 610 >UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 Tax=Xanthomonadaceae RepID=B0RYK4_XANCB Length = 752 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 249/654 (38%), Positives = 340/654 (51%), Gaps = 16/654 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK Sbjct: 100 MSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAK 159 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F Sbjct: 160 SLNCETGTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKF 219 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ +FNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK LD Sbjct: 220 KVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 279 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ Q+ IL E I +P A+ L++AA+GSLRD LSL DQAIA G + V M Sbjct: 280 DQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTM 339 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D Q ++++A+ + +G +++ ++ A +W +L + LHRI + QL P+ Sbjct: 340 LGTVDRTQVGAMLQALSDGDGAQLLKVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPS 399 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + P +QL+YQ L GR++L AP R G EM +LR LAF Sbjct: 400 VAFVGDGIDPT---GFAAQLRPEVVQLWYQMALNGRRDLYLAPSPRAGFEMAVLRMLAFR 456 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +P A T T V P +A Sbjct: 457 PAAAVPAGSGDDGRGASAGGHTRGTATGVQAAPAAAAPARAATSAKAADVSPAPVVSAPP 516 Query: 421 RVQGA------TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A +A AR + + A +A A Sbjct: 517 VAAAPSPVVVLPTAAAEPAPSAPPARTDDTPPWAVDDAPVRAQAAPQRATAEVPAAVPLM 576 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE-----AIERDPWAAQVSQ 529 A P + + P AA + + W V++ Sbjct: 577 APEAAMALPATVADDAAPAAMDAVVPVAPPSAPAPVTPPAATFDDGHIADAEQWLELVTR 636 Query: 530 LSLPKLVEQVALN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 L Q+A N A+ D + L L +LN+ + LA+AL+ G+T + I Sbjct: 637 SGLNGPSRQLAANAAFIGHRDGVLRLALAPGFEYLNSERSIANLAQALAPELGNTPRIVI 696 Query: 589 VEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + V T E E+ + A + + D N+Q L + A + +SIRP Sbjct: 697 ETG-SADVETLHERANRQKGERQSAAETAFMNDPNVQQLIQQQGARVVPDSIRP 749 >UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Tax=Actinobacillus minor RepID=C5S1I5_9PAST Length = 698 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 327/700 (46%), Positives = 426/700 (60%), Gaps = 69/700 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI H LE IL E I +E A++ LA+AAEGS+RD+LSLTDQAIA + V+ AVS M Sbjct: 181 TQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSLTDQAIAVTNANVTLSAVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L L+ A+ A+GE+VMA+I A +G++W LL ++ +LH+IAM+QL + Sbjct: 241 LGLIDDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLLNDVAEVLHQIAMLQLVKS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A + LA+ + P DIQ +YQ +L+G+KELP AP++R GVEMT LRALAFH Sbjct: 301 AEQEESA-----IHFLAKQMAPEDIQFFYQVILMGKKELPLAPEQRSGVEMTFLRALAFH 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ--------------------- 399 P E + AP + P Q+ QP Q Sbjct: 356 P----KRTEAINLNVAPQQTQNSVAPQQIVQQPTRTAQDNIAQLRERLAKESSSTQAVQN 411 Query: 400 --------------APTVPLPETTSQV----------LAARQQLQRVQGATKAKKSEPAA 435 +P V P +T + AR+QLQ Q + + Sbjct: 412 NEHFAKVSQNATAYSPNVNAPTSTETPTQGVSAALVAMQARKQLQETQAQLDQTEKKKPE 471 Query: 436 ATRARPVNN-----------AALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 +P+N L + P E YRW P Sbjct: 472 LVIPKPINTNKQPANLQERFMNLAVAQQQQTTREKTVTKPVATAKPTNDEDYRWTWLNPE 531 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 ++ ++ A P +K+A+ E+TPEL K + + E+D W V++L+L L Q+ALN++ Sbjct: 532 LENQDESAKPSDIKRAILQERTPELVEKTISLSCEQDKWCKLVNELALGGLSRQLALNSY 591 Query: 545 KEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 + +N + L L+ + HL+N ++Q LA AL + ++ +TPLE R Sbjct: 592 LSDTQNNELHLVLKPAMAHLDNLESRQSLATAL---LEKGFTYQLTLGESAENKTPLEIR 648 Query: 604 QAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +AI+E+ A+ ++ +D + LR+ FDAE+DE +IR + Sbjct: 649 RAIFEQLTVDAKNALFSDEKLMLLRQAFDAEIDESTIRAV 688 >UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q1QXJ7_CHRSD Length = 723 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 282/717 (39%), Positives = 378/717 (52%), Gaps = 77/717 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF ++VGQEHV AL N L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRTFHELVGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G+T+ PCG C+ CREI++GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP +GR+ Sbjct: 61 CLNCRQGVTSVPCGECETCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFTLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L HIL E +A++ +AL LL +AA+GS+RDA+SLTDQAIA G G+V V+AM Sbjct: 181 ERVVGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAFGQGEVRHADVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+L EA+ E + RV+ + A +G ++ +L ++ G+ HR+A+ Q+ P Sbjct: 241 LGTLDHRHLLALAEALAEVDAARVLQEVASLAEQGPDFGGILDDLAGIFHRLAIAQMVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N + LA D+QLYYQ L GR ++ APD R +EMTLLR LAF Sbjct: 301 ALDNGHGD-RDTLLPLAARFTAEDVQLYYQIALQGRGDMESAPDPRTALEMTLLRMLAFR 359 Query: 361 PR--MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA------------------ 400 P+ P+ +P + A TA P Q +AP Q Sbjct: 360 PQGVPKPPQTPLPIRGAAEGQATASTPTADAPGQLAAAPSQPSPADTPPPAADAAPAHPP 419 Query: 401 --PTVPLPETTSQ----------------VLAARQQLQRVQGATKAKKSEPAAATRARPV 442 P P + AA L+ AT+A +EP + Sbjct: 420 SRPDTQAPVAEEEHGAAAGADASSASPADEPAAPGTLESESFATQAFDNEPLESAPPDIE 479 Query: 443 N----------------NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQ 486 + + A+ + + ++ A P + Sbjct: 480 SAVAAPPEPAAPVTEAVPPVADAQATAAEDALEDALEDEAQRQADADGAVDVDDAPPWVL 539 Query: 487 QKEVVATPKALKKALEHEKTPELAAKLAAE-------------------AIERDPWAAQV 527 + + A ++A + A + W A Sbjct: 540 DDAQMPADEISAPPEPPSAPDAPATEVAEDADAPAPTAQAPAVATPDTGAFDHARWLASF 599 Query: 528 SQLSLPKLVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L L L +A + EE D + L L SQ + +++ +AL+ G L Sbjct: 600 ASLGLGGLTRNLAAHCIVEEDDGDTLTLRLDPSQSAMLADVHVERMTKALAEQ-GVARRL 658 Query: 587 TIVEDDNP-AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + P TP + + + + AQA E++ D +IQ L + F A+L E S+ P Sbjct: 659 HVTVAAIPEGWETPRAQGERLAQARHAQAVEALRRDPHIQMLEQDFGAQLLERSVTP 715 >UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina loihiensis RepID=Q5QWS2_IDILO Length = 681 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 295/684 (43%), Positives = 388/684 (56%), Gaps = 46/684 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C EIEQGRFVDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCEEGITATPCGKCSACLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKALSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL ++L++E + + AL LLAR+A GS+RDALSLTDQAIA G G VS +V M Sbjct: 181 DDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAIAQGGGSVSIDSVRRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +L+E+++E + E VM ++ + + ++LVE+ LLH++A+VQ P+ Sbjct: 241 LGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVELQSLLHQLALVQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ L R +P IQ++Y+T+L GR+E YA D R G+EMTLLR L F Sbjct: 301 AANVF--ENSDVLKPLLRRMPAELIQVFYRTVLEGRREQAYAIDARSGLEMTLLRLLCFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P S A P + +T A A P Q A + Sbjct: 359 PAEKGDYNITEPDSSAVDMPESKLTAPAQEVTETEAGSVAEVTPQAGPEPQPEAELSEPM 418 Query: 421 RV---------------------------------QGATKAKKSEPAAATRARPVNNAAL 447 + + A EP A A P A Sbjct: 419 QPSYSEHEEPPEFNYSEPDDDAGFYHNDAPPYHMEEAAKSEPVPEPTADQTAEPTPEPAA 478 Query: 448 ERLASVTD--RVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 + + V D RV+ + K + + ++PV A P+A + + E Sbjct: 479 QSSSGVADLLRVREQLAEKKNPDNSNKTLNSQTENSSPVALTVPAEAEPEAQPE-HQPES 537 Query: 506 TPELAAKLAA------EAIERDPWAAQVSQLSLPKLVEQVALNAWKEE-SDNAVCLHLRS 558 EL +L EA E D W+A ++ + + L QV LN+ ++ D+ + + Sbjct: 538 KDELNEELPELNDDIREAAEVDKWSAMIAGMDISGLARQVLLNSELQKLGDDDWLILVAE 597 Query: 559 SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESI 618 Q+ L N Q + E+L+ L G+T + P+ TPL +Q I E + +A E + Sbjct: 598 EQKSLLNESTSQAVRESLAGLLGATARVDFKVG-VPSQPTPLMVQQHINEYRHQRACEIL 656 Query: 619 IADNNIQTLRRFFDAELDEESIRP 642 D +Q L++ F A++DE SI+ Sbjct: 657 HGDAGVQDLQQRFQAQIDESSIQA 680 >UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4U2_9GAMM Length = 635 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 261/643 (40%), Positives = 359/643 (55%), Gaps = 14/643 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I +E AL L +AA+GS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSLTDQAIAFGSEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALATVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM LLR + F Sbjct: 301 -------SYDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLLLRMVLFT 353 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + + P+ P + P + S+ A Sbjct: 354 P-----KGVLVQGDSPAAKKPEAAVPSAEPGGKPDLRALLNSPPAAASHSEPAARPAAQP 408 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A+ + + + ++ A + A Sbjct: 409 PEPAPATVTSAPAQQTAPVEAAAPASADDAPPWDEGPASSSPSASAALAQVEANQPEPAA 468 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + P+ + + A+ EA WAA + +L + V +A Sbjct: 469 EAAAAVAAQPQSDPEPNAEPAPESENLAPLAEPTNEAEVATWWAALLLRLDVDGTVRNIA 528 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L N+ ++L+ AL +++ + + P TP Sbjct: 529 RNAVLISREESVWTLRISPGHQVLVNKERLEELSGALGNYFQRRIQVQVEFEQQPG-ETP 587 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E LAQA++++ AD +Q L F LDEES+ P Sbjct: 588 ERMAEARRQELLAQAKDTLHADPVVQQLVTTFAGRLDEESVTP 630 >UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=cellular organisms RepID=Q7NXL6_CHRVO Length = 639 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 265/645 (41%), Positives = 362/645 (56%), Gaps = 10/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG TA PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GRF Sbjct: 61 SLNCETGTTAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYAPTMGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E I +E AL LL RAA GS+RDA SL DQAIA G G+V V AM Sbjct: 181 QQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAYGLGEVKEDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L++A+ ++G +MA + A RG+ +++ L E+ LL ++A+ Q PA Sbjct: 241 LGAVDRRYLFTLLQALAASDGPALMAEADRLAERGVSFDSALSELAVLLQQLALAQTVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL D + LA I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 301 ALAADEPE-RDTLFALADAIAPQDVQLYYQIAIHGRKDLALAPDEHAGFNMTLLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + A V P V ++ + + L A+ Q Sbjct: 360 PANAPAQTAAPARPAAAVQPRPVAASAAAVASVSVPAERGMSPAARALQAAGLGAQAQ-- 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 AA +++V++ + P P A + Sbjct: 418 ----GKPRAAEPSPAAEPEPEPAPLPSAVVSAVSEPSKPAPSPQPAPALAAPVSEPAAQD 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVEQV 539 ++E+V P + A+ + W V+ L + Sbjct: 474 DEDERDEEEIVEAPWSDDDAMPAYMQQPPLEDEPSSYSFDGDWQRLVADLGAKLGAARML 533 Query: 540 ALNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A NA + S + + L + S RH++ R Q+KL AL+ G V+L + + + T Sbjct: 534 AHNAVLKRWSQDRLELAVPESFRHMSGRDYQEKLKAALAERFGHPVDLAVTV-EELGMET 592 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P + +E+LA ARE + D +Q + R F A L E+I+P+ Sbjct: 593 PAMTDARLRQEQLAVARECMQNDPVVQQMVREFGATLLIETIQPV 637 >UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax=Betaproteobacteria RepID=A6T0H3_JANMA Length = 673 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 258/677 (38%), Positives = 344/677 (50%), Gaps = 38/677 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP++F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 NC GIT+TPCGVC+ C I+ GRFVD IE+DAAS V++ LL+ YAP Sbjct: 61 SFNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + RFKVY+IDEVHML+ H+FN++LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L++IL +E+I E AL+LLA+ A GS+RDALSLTDQAIA G+V+ Sbjct: 181 KQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLD 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG LD + L++A+ E +G ++A+ +E A R + + A L ++ LLHR+A+ Sbjct: 241 AVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNAALQDLCTLLHRVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PAA+ D+ MR LA +IQL+YQ + GR EL APD G MTLLR Sbjct: 301 QTVPAAVPEDLPEYADVMR-LAGLFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLR 359 Query: 356 ALAFHP----RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 LAF P P + A AV P SA QA + P Sbjct: 360 MLAFRPGFGPAEAKPVAAAAPAARPAAATPAVAPAASAPAARLSAAPQAASTSAPVARPT 419 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + + K + AA P A A+V A V A Sbjct: 420 GAMSPARAALEAARAGVKGAPAPAARPVAPAAPVAAPAPAAVAAPSPAMAVADRS-PAID 478 Query: 472 KKEAYRWKATTPV--MQQKEVVATPKALKKA------------------LEHEKTPELAA 511 A W P E ++P A KK Sbjct: 479 MAPAPPWDDEPPFAGSNGIEEFSSPVAQKKTEPEPAAVAEAAPAPAPVPAAPRVARPFQL 538 Query: 512 KLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-----EESDNAVCLHLRSSQRHLNNR 566 A W A + L + + +Q+AL + + L + L Sbjct: 539 HPVASLNWDGNWPALAAILPVRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLAN 598 Query: 567 GAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQT 626 G+ +KL L G TV L T A E+ +A +S+ D +Q Sbjct: 599 GSAEKLTAVLCEHFGQTVRLQTTIGAVE--HTASAAAIADRAERQREAEQSMQEDPFVQK 656 Query: 627 LRRFFDAELDEESIRPI 643 L R F A + S++P+ Sbjct: 657 LMREFGATIVPGSVKPV 673 >UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Tax=Pasteurellaceae RepID=B8F323_HAEPS Length = 670 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 319/676 (47%), Positives = 421/676 (62%), Gaps = 41/676 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGI+A PCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGISADPCGQCANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+AL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ LE IL +E I +E AL LA+AA+GS+RDALSLTDQAIA + ++ VS M Sbjct: 181 SQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIAVSNVNITLPIVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L LV+A+ A+GE+ MA+I A +G++W+ L + LH+IAM+QL Sbjct: 241 LGLIDDHQPLELVQALANADGEKAMAVIQSVAEKGVDWQQLFSDTAETLHQIAMLQLLKH 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + LA+ I P D+Q +YQ +L G+KELP+AP++R GVEMT+LRALAFH Sbjct: 301 AHQEETP-----LHFLAKQISPEDVQFFYQVMLTGKKELPFAPEQRSGVEMTILRALAFH 355 Query: 361 PR------------------------MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P+ L E +Q+ A T + Q + S Sbjct: 356 PKNMATTTTVATPTTPVAPVQSPNSISQLRERLAQQQNSAQTVTTQAVNTEQHFAKNLSQ 415 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN--------NAALE 448 P +PT E+ S L A Q Q+++ + + + + L Sbjct: 416 PTASPTETNTESISPALKAMQARQQLKAKQEQQDEKKKSDLTPIQPPKTVNKKSVQQGLM 475 Query: 449 RLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 L + D+ Q A E YRW P ++ +E P +K+A+ E+TPE Sbjct: 476 NLVTAQDQRQQIEETPQKNIASQNDEDYRWTWLNPELENQEEAPKPSEIKQAILQERTPE 535 Query: 509 LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSSQRHLNNRG 567 L K ERD W+ V+ L L + Q+ALN++ E ++N + L L + HLN+ Sbjct: 536 LVKKTIELGCERDKWSRIVNSLKLGGVSRQLALNSYLESHNNNHLLLVLNPTMAHLNSNE 595 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 A Q L ALS + ++ +TPLE R+ I+E+ +A++++ AD ++ L Sbjct: 596 ATQSLYNALSQ---QGFSSEMRIGESDEFQTPLEIRRVIFEQLTQEAKQALQADKKLKLL 652 Query: 628 RRFFDAELDEESIRPI 643 ++ FDA++DE +IR + Sbjct: 653 QQAFDAQMDEATIRAV 668 >UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseriaceae RepID=C5TP18_NEIFL Length = 666 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 249/662 (37%), Positives = 364/662 (54%), Gaps = 22/662 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE + PCG C++C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCENAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+P+T+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E++ ++P+ALQLL RAA GS+RDALSL DQAIA G G+V+ Q V M Sbjct: 181 QQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGSGKVAEQDVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+E ++ NGE ++ E +AR I +++ L E+ LL R+A++Q P+ Sbjct: 241 IGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLLQRLALIQTIPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL ND + L++ + IQLYYQ + G+++LP APD G MTLLR LAF Sbjct: 301 ALANDDPE-RETLLRLSQALSGEQIQLYYQCAIHGKQDLPLAPDEYAGFVMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + + + P P+S P AP V ++ + Sbjct: 360 PLAASGCDTQSQIEHTDLHSDHQKAEAEKKPFQLPKSEPIAAPAVEKEAAPAKQDTVERS 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + + P V+ + + A+ + ++KAPA +E Sbjct: 420 SEETVQSVQQQADVPPWEEMPSQVSVESPQTQAAQMQEATEPLPVAKVQKAPAPEEYPHM 479 Query: 479 KATTPVM-------------QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 P V P A ++ E E E + + W + Sbjct: 480 DEEIPPPYFDEAYTYEDSHHADVMEVPQPVASAESEEEEGDEEELQFAPLPEFKTENWHS 539 Query: 526 QVSQLSLP-KLVEQVALNAWKE---ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM--L 579 + + + + +A NA + L L + N+ K+ + LS Sbjct: 540 IIERFARKLGAAQMLAQNAAWTSYDAEAGLIMLSLTDEAKATANKERLDKICQTLSEAYH 599 Query: 580 KGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 G+ T D+ TP+ R+ I EE QA+E + AD Q + + F+A+ +S Sbjct: 600 LGNLRLQTEPWQDDKGWETPVMRRKHIQEEGRQQAQELLEADTTAQKILQTFEAQWLPDS 659 Query: 640 IR 641 + Sbjct: 660 LE 661 >UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z526_9NEIS Length = 657 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 277/648 (42%), Positives = 366/648 (56%), Gaps = 20/648 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FAD+VGQEHV+ AL N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 22 MTYQVLARKWRPKRFADLVGQEHVVRALTNALAGERLHHAYLLTGTRGVGKTTIARILAK 81 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GR+ Sbjct: 82 SLNCEAGVGAEPCGECSACRQIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTSGRY 141 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 142 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 201 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L +L+ E +++E AL LL RAA GS+RDALSL DQAIA G G+V V AM Sbjct: 202 QQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLLDQAIAYGVGKVEEGGVRAM 261 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+EA+ EA+G R++A A RG+ +++ L E+ LL +IA+ Q PA Sbjct: 262 LGAVDRAYLYTLLEALAEADGPRLIAEAKALAERGVGFDSALGELALLLQQIALAQTVPA 321 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D E + LA+ I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 322 AITGDDPDAEAVL-ALAQLIAPEDVQLYYQIAIHGRKDLALAPDEHAGFTMTLLRMLAFH 380 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P AP T P+P S P AP+ P E S A +L Sbjct: 381 PL------------NAPGDSTPTPRAAASRPEPASRP-AAPSEPSVEGASAAKALLARLS 427 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 GA ++ + P + A P A A P E W+ Sbjct: 428 GRNGAARSAPATPDESAPADPEPEPARVEPAPRPVPAAPAVATQPEPGTPPSVELAPWED 487 Query: 481 TTPVMQQKEVVA---TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLV 536 A A A E P A + WAA V++L Sbjct: 488 APDDAGDVAAEAWQAGASADDSAAEAWSEPAAPPAAAEPYVFDGDWAALVAELGARMGAS 547 Query: 537 EQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 +A NA + D + L + S RHL R Q+KL AL+ G EL++ + Sbjct: 548 RMLAHNAVLKSWDGRRLQLAVPESFRHLATRDYQEKLKAALAERFGQAPELSVSV-EELG 606 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + TP +E+LA AR ++ D ++ L F+A L E+I+P+ Sbjct: 607 METPAMREARFRQEQLAAARVNLENDPVVRQLVGEFNAVLLTETIQPV 654 >UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I98_THICR Length = 696 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 259/697 (37%), Positives = 378/697 (54%), Gaps = 58/697 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ VLARKWRP+ F+++VGQ HV+ AL+N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MTDTVLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCGVC CR I++GRFVDLIE+DAAS+TKVEDTR+LL+NVQYAP +GR+ Sbjct: 61 ALNCEQGITSKPCGVCSTCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYAPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDP KLP+T+LSRCLQF+L L + Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSRCLQFNLMRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +IL +E + E AL ++A++A+GS RD+LS+ DQAIA G G+V AV AM Sbjct: 181 PQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGGGKVQYDAVQAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L+++ A+ + + + +I + A G+++ AL +++ LH+++M+Q+ Sbjct: 241 LGLVDQQFTLNILSALANESADELKEVIQQLALMGVDYTALNGQLIEALHQMSMLQVLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +E+ +++L+ + P IQ+ YQ L+ ++++ APD R+G EM+LLR LAF Sbjct: 301 LTESSLIEVEM-LQKLSEQLSPERIQVLYQIALLAKQDMALAPDIRIGFEMSLLRMLAFK 359 Query: 361 P---------RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 P PE + RQ A P +P QP +A + P Sbjct: 360 PVFSETMSSMEQTEPEEGMSRQENVKTARPGQNEPAAIPNQPAAADEARTNFEAPSHFEA 419 Query: 412 VLAARQQLQRVQGATKAKKSEP--------------------------------AAATRA 439 A + + Q A ++ +P A Sbjct: 420 PSAPQSSMPETQAAPQSSAPQPSGEMDHLTDLKARLDSTLGKSEAPIEHRENHDAEVPTF 479 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKAPAKKE-------AYRWKATTPVMQQKEVVA 492 + +LE+ AS + A + A +A P + + + Sbjct: 480 DVPSGQSLEQSASFLTETRQEDDRPVESAAAFQASSHVPVQKAVTEEAMAPAFESPGMES 539 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERD-----PWAAQVSQLSLPKLVEQVALNAWKEE 547 + ++ E E E A + D W A ++QL L + ++A + + Sbjct: 540 VTPSSQEHFEQEPVSEAVVADAPIEMNADTASVTDWIALITQLQLEGMAAELARQSILVK 599 Query: 548 SD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D ++ L + Q H A Q+L E + G + I D TP + A Sbjct: 600 RDAQSLTLSIDPEQVHAKTELALQRLEEQVKAQLGVRL---IFVDYPEDHWTPAKHFAAE 656 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + + A ESI D +Q L + + ++ E SIRPI Sbjct: 657 AKARQGNAAESIRNDAVVQNLIQTLNLKVIESSIRPI 693 >UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 Tax=Candidatus Blochmannia RepID=Q493A4_BLOPB Length = 698 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 282/689 (40%), Positives = 415/689 (60%), Gaps = 48/689 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+D+VGQEH++ A+ + SL +IHHAY+ SGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPKKFSDIVGQEHIIQAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G T T CG C+NC++IE G F+DLIEIDAASRTKVEDTR+ LDNVQY P+RGRF Sbjct: 61 GLNCEQGTTYTMCGQCNNCKDIELGCFIDLIEIDAASRTKVEDTREFLDNVQYMPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKF+L TT+ QKLP TILSRCLQF+LK L++ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPTHVKFILVTTEYQKLPETILSRCLQFYLKPLNI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +I ++E+I E AL+ LA A++GS+RDALSL +QAI G+ +++ ++ M Sbjct: 181 SQIINQLTYIFHKENINIETSALESLAYASKGSMRDALSLAEQAIVLGNNEITNNVINNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 G + + L L+E++++ + +M I G+ W+ + E+L +L +IA+ Q Sbjct: 241 FGISNIEHPLCLIESLIDEDIHNIMHQIENLTVLGVHWDYVFNEILTILQKIAIGQFLSN 300 Query: 298 -SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N I RMR L+ I P ++QLYYQ L+GR+ELPYAP RMG+EMT+LRA Sbjct: 301 SVQKEDNNVTQHINQRMRRLSNRITPENVQLYYQIFLLGRRELPYAPSHRMGIEMTMLRA 360 Query: 357 LAFHPRMPL---------PEPEVPRQSFAPVAPTAVMTPT---------QVPPQPQSAPQ 398 LAF P + + + ++S + T Q Q + Sbjct: 361 LAFRPDVDIANKKNGNGDDNDHILKKSVCSNNNVEINTNDTQHIATDLFQKKNHNQGSKN 420 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTD--- 455 T L +T + +L ++ + TK K S+ ++ R + + LE + + Sbjct: 421 VLNTEKLKKTNNILLLNFKKSELNSDNTKPKISKSVSSRDTRDITSTILEARSKLLQYKE 480 Query: 456 --------------RVQARPVPSALEKAPA------KKEAYRWKATTPVMQQKEVVATPK 495 + + LE+ + K + R++ + + Sbjct: 481 RDKLNVIEKKSNLTLESQKKIKDILERFASINTIILKNSSDRFEKINKDLSGYLEFSNNS 540 Query: 496 ALKKALE--HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE-SDNAV 552 K+ L H+ P+ ++ +AI + W +Q+ +LSLPKL +++ +N+WKE+ S + + Sbjct: 541 NNKENLHRNHQNMPDFIKEILQKAINNNLWISQIYRLSLPKLAKKLVMNSWKEKISSDEI 600 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 CLH+RS +HLN+ + + ++LS G ++L I +DDN A++TP+E +Y+EK++ Sbjct: 601 CLHVRSDYQHLNSTELRNIIQKSLSNNIGIAIKLHIKKDDNYAIKTPMEHLYTLYKEKIS 660 Query: 613 QARESIIADNNIQTLRRFFDAELDEESIR 641 ++ +D ++ ++ FFDAE+DE I+ Sbjct: 661 LIKKEFSSDPYVKMIKSFFDAEIDENDIQ 689 >UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 Tax=Vibrio RepID=Q7MIV2_VIBVY Length = 730 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 311/733 (42%), Positives = 397/733 (54%), Gaps = 93/733 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+ F +VVGQ HVLTAL N L R+HHAYLFSGTRGVGKTSI RL AK Sbjct: 1 MSYLALARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCG CD CREIE+GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 ALNCEKGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+ IL +E + + RAL ++A AA+GS+RDALSLTDQAIA G+GQ+ T VS M Sbjct: 181 DAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNGQIETDLVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D DQA+ L+EA+ + M I + A G EW+ LL ++ LHRIAM QL P+ Sbjct: 241 LGTIDTDQAIHLLEAISSKQPQVAMDKIQQLAQNGAEWDGLLQQLATQLHRIAMYQLLPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L ++ L+R + P D+QL+YQ L GR +L AP+ R+G+EM +LR +AF Sbjct: 301 SLDKAQPDA-EKIELLSRALSPQDVQLFYQIALKGRDDLSLAPNGRIGMEMIVLRMMAFR 359 Query: 361 PRMPLPEPEVPRQ-------------------SFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 P + Q S A AP P+ P PQ Sbjct: 360 PADVSQANIISAQGANLASAPAAQSAAPQVSTSPAQTAPAMSAKPSSERVAPAERPQAVS 419 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPA------AATRARPVNNAALERLASVTD 455 P +S + Q VQ + P P E A++ Sbjct: 420 HAPSRLASSMNAPSSVAPQPVQTEMPPQYDAPPMDYADYPPMDDMPPMGYGYEDAAALQP 479 Query: 456 RVQARPVPSALEKAPAK-----------------KEAYRWKATTPVMQQKEVVATPKALK 498 Q P + +PA + K + +KE V A K Sbjct: 480 EPQPAPQQAPERASPAPGGLTGLRHQLRSQRQGLAQNGGSKKSKAASAEKESVLDRVAQK 539 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQ-------------------------------- 526 +A + +P + + ++ D Sbjct: 540 QATAAQVSPRQSLAPSEPEVKEDEPYQWRPSQPVVQSKSKELTPTEIKRALEHEKTPEMA 599 Query: 527 -------VSQLSLPKLVEQV---------ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 + Q KL+ Q+ ALN+ + + + L LRS Q+HLN AQ+ Sbjct: 600 EKLVAESLEQSEWAKLITQLETAKLVEQLALNSAFNKEGSTIALTLRSHQQHLNTDKAQK 659 Query: 571 KLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 +L AL+ G T L++ TPLE R+ +Y++KL QA S+ D ++Q + R Sbjct: 660 ELLSALNETLGETCHLSVEVG--GQGETPLELRERLYQQKLQQAFTSLENDTHVQFILRR 717 Query: 631 FDAELDEESIRPI 643 F AELD +S+RP+ Sbjct: 718 FSAELDRDSVRPV 730 >UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KYG2_9GAMM Length = 672 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 248/643 (38%), Positives = 340/643 (52%), Gaps = 59/643 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQVLARKWRP F ++VGQ+HVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 84 MGYQVLARKWRPGNFQEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAK 143 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+++TPCG CD+C EI +GR VDL+E+DAASRTKVEDTR+LL+NV YAP R RF Sbjct: 144 CLNCDQGVSSTPCGTCDSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVLYAPTRSRF 203 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP H KFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 204 KIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSRCLQFNLKNMVP 263 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L +L EE +A + +L LLARAAEGS+RDALSLTDQAI GDG ++ V AM Sbjct: 264 EEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSLTDQAIGFGDGGLAESDVRAM 323 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L +++A+++ + + ++A+I + A+ ++ A L ++ +LH++ + Q P Sbjct: 324 LGTVDRARVLDVLDAILDNDPKTLLAVIEQIASHAPDYVATLDDLASVLHQVTIAQWVPD 383 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A+ R+ ++A + ++QL+YQ GR E+ +PD R +EM LLR +AF Sbjct: 384 AA-DPTASQSERIAKVAASTTVDEVQLFYQFAAAGRPEVQRSPDPRAALEMVLLRMIAFR 442 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + V P P P A + P T + L +L Sbjct: 443 PAEVISD-------AHEVPPPKKTEPPVPPVDSVGAGAIETSGSAPSLTHEELRPPVRL- 494 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 P +A + V D + P P E P + Sbjct: 495 -----------APRVVADQPEKADAIPAPIDPVVDAPTSNPQPGPAESEPLEPPRVAADL 543 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P W A L+L + E +A Sbjct: 544 PAPA-------------------------------------EWPAFFDDLALRGIAENIA 566 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ S + L S L N + E + V + + A TP Sbjct: 567 MHCELRSVSGRTLSFVLDQSNAGLFNERHVAAIEEQFNAHLQPPVTIEVEVGVVGAA-TP 625 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R + + A +++ D + T FDAE+ SI P Sbjct: 626 AARRAELEAARQKAAEDALAEDPVLTTFLADFDAEVIVGSIEP 668 >UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina baltica OS145 RepID=A3WNZ0_9GAMM Length = 640 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 277/645 (42%), Positives = 369/645 (57%), Gaps = 9/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP F VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C +C EIEQGRFVDLIE+DAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCERGVSARPCGECPSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT++SRCLQF+L+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFNLRALDR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QLE++L E++ H+ +AL LLA++A+GS+RDALSLTDQAIA G G+V ++V M Sbjct: 181 EQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIAQGQGKVQVESVQRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D L++A+ + V +E + + +L E+ ++HRIA++Q PA Sbjct: 241 LGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNELQRVIHRIALIQQIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +G L R +P +QLYY+ ++ G+KE PYA D + VEMTLLR L+F Sbjct: 301 MMGA--EDKTNTTEALLRKLPAEVLQLYYRIVIEGKKEAPYAVDPQSAVEMTLLRLLSFT 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E + P + +T ++ + A Q + + A Q + Sbjct: 359 FENPESGEEALTR--PPESNLDTITQSEQAEEAAHAGQHSGDTSIQSEADDTSALEAQQR 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK--KEAYRW 478 ++ + A A + A E LAS+ + Q EK ++ E Sbjct: 417 DIEAQAAQHRMSRPAEGVAEDNSVAPDEGLASLLNMRQDLSGHQEPEKKNSEIDIETPSE 476 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + P Q + A P + A + D WAA V ++ L Q Sbjct: 477 QPHLPSRQPDKQHAEPVQTTPVSLSHIQQRFDSST-RRAADVDSWAALVDATAVQGLTRQ 535 Query: 539 VALNAWKEESD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + LN+ E+ C+ + Q+ L + EAL + + E + + + Sbjct: 536 LLLNSVLEKVGHQQWCIWVTEEQQSLLSEKTVALAREALCEVLSAQGEYRFLVG-SQQMS 594 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TPL +QAI +L QA+ + D+ L FDA DE SI Sbjct: 595 TPLLIQQAIDHYRLEQAKLWLQNDSGFNELLNSFDAVTDETSISA 639 >UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C4ZNJ5_THASP Length = 716 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 269/719 (37%), Positives = 364/719 (50%), Gaps = 79/719 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F +VGQEHV+ AL + L+ GR+HHA+LF+GTRGVGKT+I+R+LAK Sbjct: 1 MSYQVLARKWRPKSFGTLVGQEHVVRALTHALATGRLHHAWLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCG+CD CR I+ RF D +E+DAAS VE+ LLD YAP +GRF Sbjct: 61 ALNCETGITAEPCGICDACRAIDADRFPDYVEMDAASNRGVEEMAALLDKAVYAPVQGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E +A EP AL+ LA+AA GS+RDALSL DQAIA G G+V + VS M Sbjct: 181 GHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAIAHGAGRVEEEQVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ DD ++++A+ + ++A+ + AR + ++A L + L+HR+A+ Q +PA Sbjct: 241 LGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQALATLVHRVALAQYAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +++ R+ +QL YQ + GR ELP APD G MTLLR AF Sbjct: 301 AIADEL--ERARILGYVERFDAEFLQLAYQVAVHGRDELPLAPDDYTGFTMTLLRLHAFR 358 Query: 361 PRMP--LPEPEVPRQSFAPVAP----------TAVMTPTQVPPQPQSAPQQAPTVPLPET 408 P P L P VP A A + P A A Sbjct: 359 PEQPAALGGPGVPSGPDAGRARAPALAAGGPAESGRAAESGVPAEVPARTVASAGIAGPA 418 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRARP-----------------------VNNA 445 + V A + + E AA +P Sbjct: 419 PAAVPAPAAGADAAIPSAQQTVLEAAAPASMQPGSVPAAQQAVAPAPASAPPRRSAREEH 478 Query: 446 ALERLASVTDRVQARPV--------------PSALEKAPAKKEAYRWKATTPVMQQKEVV 491 A++ + VQ P P E EAY A Sbjct: 479 AVQPARAAPASVQDVPPWEDLPPEAYADSDLPPPREARNGHDEAYAASAGAHTGAISRAR 538 Query: 492 ATP-----------KALKKALEHEKTPELAAKLAAEAIER-------------DPWAAQV 527 P + L + PE A AA + W + Sbjct: 539 PEPRGGGARRAEEVPSRSAPLPAVRAPEPATSPAAPTQDAPAASGDAAALLALGDWRGLI 598 Query: 528 SQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLN--NRGAQQKLAEALSMLKGSTV 584 L L LV ++A + W E D + L L ++ RHL NRGA ++L + L G T+ Sbjct: 599 RALGLGGLVRELAQHCEWVECGDGVLQLRLSTAHRHLLDMNRGAVERLQDVLCAALGRTL 658 Query: 585 ELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + I D +TP + + + A+A ++ AD ++ L FDA L E +++P+ Sbjct: 659 AVRIAIGDISG-QTPAQRDAIERQVRHAEAVAALEADPFVRELIERFDATLVENTVKPL 716 >UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC05_9GAMM Length = 588 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 256/627 (40%), Positives = 350/627 (55%), Gaps = 41/627 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VGQEHVL AL N L R+HHAYLF+GTRGVGKTSIAR+LAK LNC+ G+++ PCG C Sbjct: 1 MVGQEHVLKALINALDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEPCGQCS 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 C I +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP GRFKVYLIDEVHMLS +SFN Sbjct: 61 ACLSISEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTAGRFKVYLIDEVHMLSTNSFN 120 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP HVKFLLATTDPQKLP TILSRCLQF+LK + E+I L+++L +E I Sbjct: 121 ALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFNLKNMSPERIVVHLQNVLEQEMIT 180 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 +E AL LL R+A+GS+RDALSLTDQAI+ G G++ V +MLGT+D +VEA++ Sbjct: 181 YEEPALWLLGRSADGSMRDALSLTDQAISFGSGKLLEADVRSMLGTIDRSAVYEIVEALI 240 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 NG +V+A +N A ++ + L E+L LLHRIA+ Q P A N ++ ++ Sbjct: 241 AENGAQVLAAVNNMAEHAPDYLSALEELLMLLHRIAIAQAVPDATDNSFGD-GAKIIAMS 299 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAP 377 + D QL+YQ L GR++L APD R G EM LLR LAF Sbjct: 300 ALLTAEDTQLFYQLGLTGRRDLSLAPDLRSGFEMVLLRMLAFK----------------- 342 Query: 378 VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAAT 437 P +P P+ + +P E V +Q ++ T S Sbjct: 343 --------PAGIPQLPERSLTNSPV--SVEAPQPVKKPDAGVQSIKADTPVSFSSKLGPA 392 Query: 438 RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKAL 497 ++ VN+ L+ +VT + P+ A + V A Sbjct: 393 QSSVVNDIQLQVDGAVTKAIGEEPLH-----------AVTVSESVAVPLAAPAPAPVPVA 441 Query: 498 KKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVCLHL 556 + E + + L+ + + D W A +L +V +A + + +DNA+ L L Sbjct: 442 VLVDDTEMSLDEKGPLSLDQLRPDSWNALFERLGFGGVVGNIASHCILVDVTDNAMSLQL 501 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 ++ L + ++ E L++ + V + I + TP + + E+ A Sbjct: 502 DAANATLFSDSYTARIQEHLTVTLNTPVTVKIEV-TPLSAETPALRKNRMQNERREAALL 560 Query: 617 SIIADNNIQTLRRFFDAELDEESIRPI 643 S+ D N+Q L FDA LDE S++P+ Sbjct: 561 SLKNDPNVQVLVSDFDAVLDEASVQPV 587 >UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionaceae RepID=B6EJ42_ALISL Length = 714 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 292/718 (40%), Positives = 396/718 (55%), Gaps = 79/718 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQSHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKF+LATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ + RAL L+A AA+GS+RDALSLTDQAIA G+G V+ VS M Sbjct: 181 DQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSLTDQAIALGNGNVTADIVSMM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M+ IN+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMSCINDLADIGVEWDGLAKEIAAQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ L R +LP AP + GVEM LLR +AF Sbjct: 301 TLDKTQPDA-ERIELLSGQLSPQEVQLFYQIALQSRNDLPLAPTEKTGVEMMLLRMVAFR 359 Query: 361 P-----------RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 P +P EP + AP + + + P + AP P+ Sbjct: 360 PVHAQAIEALPIAVPSMEPAAVNVAPQQPAPASRVQQV-IASAPNAEVPVAPKPMQPQAV 418 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE-- 467 SQ + + + + +E P + + ++ + P+ + Sbjct: 419 SQTVYSPVSNSQQSSSAPLDSTEAQPPVYDAPPMGESSQSDSAPVQNIPQEPIATPRSGL 478 Query: 468 -------KAPAKKEAYRWKATTPVMQQKEV-----------------------------V 491 ++ + T+P Sbjct: 479 LGVRNQLRSAKNNLSNTTTGTSPKKGSAASDKKKTSSVLERIAEKQHLAPRTQVSQLGTS 538 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA 551 + + + K + K I + P++V+++ K+++ +A Sbjct: 539 VSQEKKPEEPYRWKASQPEVKKVVSDITPTKLKQALEHEKTPEMVQELVDETVKQDTWSA 598 Query: 552 VCLHL--------------------------RSSQRHLNNRGAQQKLAEALSMLKGSTVE 585 + + L RS+Q HL N A + +++ALS ++ Sbjct: 599 LAMSLALPKLVQQLVLNSSFEEHDDQVSLHLRSAQSHLINDKAHELVSQALSSALNKEIK 658 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 L I +PLE R+ +Y+ KL A +S+ D ++ + + AE+D+ES+RPI Sbjct: 659 LNIDISAEG--TSPLELREQMYQTKLQTAYQSLQQDPHVNFFMQRYGAEIDQESVRPI 714 >UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX1_HAHCH Length = 735 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 270/734 (36%), Positives = 355/734 (48%), Gaps = 93/734 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP FA++ GQEHVL AL N L+ R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MAYQVLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C CREI +GRFVDLIEIDAASRTKVED R+LLDNVQYAP R R+ Sbjct: 61 CLNCEQGVSAIPCGECGVCREIAEGRFVDLIEIDAASRTKVEDMRELLDNVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I L H+L E++ E AL LARAAEGS+RDA+SLTDQAIA GDG++ + V M Sbjct: 181 QRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSLTDQAIAFGDGKLEAKDVIEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + L+ + + ++A +N A ++ +L + LLHR+A+ Q P Sbjct: 241 LGTIEKHVVIDLLRTIAAQDCAAMLAQVNHMAQFAPDYAYVLQALAELLHRVAVEQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N ++ ELA+T+ D QLYYQ L+GRK+L APD R G EM LLR +AF Sbjct: 301 GVDNSFGDQ-QQVSELAQTLTAEDTQLYYQIALMGRKDLALAPDPRTGFEMALLRMIAFR 359 Query: 361 P------RMPLPEPEVPRQSFAPVAPTAVMTPTQV----------PPQPQSAPQQAPTVP 404 P ++ P S +A P+Q + P+Q P Sbjct: 360 PNIKSARQIQAPSAASSAASADDDKESAQPGPSQTETAVAAQPAPAVEATPEPRQEIAAP 419 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSE-PAAATRARPVNNAALERLASVTDRVQARPVP 463 PE QV R + + + P + ++ + RP P Sbjct: 420 QPEPPQQVAEKRDTPSPQEPPRQGLSQQGPQKQEPSNQGEAPVIDAAPVTPAQPIERPPP 479 Query: 464 SALEKAPAKKEA--------------------YRWKATTPVMQQKEVVATPKALKKALEH 503 E P + Y + P K+ Sbjct: 480 GHSEAEPPPVDDYDAYFADDPGPSDADYGFSGYPAETGYPDDGSHAAPVANPQPKEERPQ 539 Query: 504 EKTPE---------LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC- 553 P + S+ VA N+ K+ + Sbjct: 540 AAAPAREPQGREAIAPPPKSVTESVPGLHPGPGEAGSVNTTPPVVAANSVKKSPAGPLTP 599 Query: 554 -------------------LHLRSSQRHLNNRGAQQ------------------------ 570 L + L R A + Sbjct: 600 PLEGEPTMQGMVWKDAVKRLAISGMTATLAQRCALEAVTPGLVIFTIDREHLDFFNEAQR 659 Query: 571 -KLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 +L A+S G V++ + ++ TPL++ + E QA +I D NIQ + Sbjct: 660 ERLRAAVSEFMGEAVKIEVSAGES-KWLTPLQYAERRRAELQQQAETAIRNDPNIQMMAG 718 Query: 630 FFDAELDEESIRPI 643 F A + E SI PI Sbjct: 719 RFGAAVIENSIEPI 732 >UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=B0VRL4_ACIBS Length = 682 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 248/684 (36%), Positives = 342/684 (50%), Gaps = 47/684 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL++ L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E IA + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + E+V L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +L++ I D+QLYYQ GR +L A + G EM +LR LAF P Sbjct: 302 LKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MP----LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL------------- 405 P + EP + T ++ P P + + P Sbjct: 362 APNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPE 421 Query: 406 ----------------------PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 V + V + + P Sbjct: 422 PQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEP 481 Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH 503 + E + + E K + + E VA K Sbjct: 482 ASTAEPIGLFEASNAEFSLAQDTSAYDLVSEPVIEKQSLVQAEIVETVAVVKEPNATDNS 541 Query: 504 EKTPELAAKLAAEAIER----DPWAAQVSQLSLPKLVEQVALNAWKEES-DNAVCLHLRS 558 + P+ KL ++ +E + W L V+++A + H+ Sbjct: 542 QLMPQDILKLPSQTLEGEWTLEKWEFWFRNSQLSPAVQELAQHGVMTGEIGGNTVFHIPQ 601 Query: 559 SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESI 618 ++ QQ L EAL +T + T+ TP + E+ +A E + Sbjct: 602 EYENMLT-QLQQALIEALKQQWPNT-QFTVEYGAV-NTATPYVMQSVRKEKAFHRATELL 658 Query: 619 IADNNIQTLRRFFDAELDEESIRP 642 I++L FD EL ++P Sbjct: 659 QQQPVIKSLIETFDGELQNIQLKP 682 >UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJR0_9GAMM Length = 587 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 263/643 (40%), Positives = 339/643 (52%), Gaps = 74/643 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+QVLARKWRP F D+VGQ HV+ ALAN LS R+HHAYLF+GTRGVGKT+IAR+LA+ Sbjct: 1 MSHQVLARKWRPGRFEDLVGQPHVVRALANALSGDRLHHAYLFAGTRGVGKTTIARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C +C EI +GR +DLIE+DAASRT+V+DTR+LLDNV YAP GRF Sbjct: 61 CLNCETGITATPCGECRSCVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYAPTAGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFNLKPMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E + EP AL L AAEGS+RDALSLTDQAIA G +++ M Sbjct: 181 ALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAYGGDRLTESDACDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L + L++A +G +M + E G +W LL E+ L+HR+A+ QL Sbjct: 241 LGLLPRTRLTGLLDAAFAGDGPGLMQGLQELKGLGPDWSRLLDELAALVHRVAVEQLVRG 300 Query: 301 ALGNDMAAIELRM-RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 G + R RE A I +QL YQ L+ G ++LP+APD +MGVEMTLLR LAF Sbjct: 301 EGGAEDDDAAERWARETAARIDAETLQLTYQILIHGARDLPWAPDAQMGVEMTLLRLLAF 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT-SQVLAARQQ 418 P P + A P++ P P P+ T + Sbjct: 361 RPEGPGEGAVSVERQGGTPATA-----------PRTGPSADPATARPDATMRSAPPPIPE 409 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 R + + ++ +P + Sbjct: 410 PPRERAQERVREPDPGS---------------------------------------DIGL 430 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + P + E V +P+ + + E V +L+L ++Q Sbjct: 431 NESAPRPRDAEPVRSPEPDSGPFDWHRFAEGLPT------------GTVRELALHGELQQ 478 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + D +V + + L + +L EAL G +V L IV+ P+ T Sbjct: 479 L--------DDESVVIAVAP--GTLYTDRTRTRLKEALETRLGHSVRLEIVDQTQPSQAT 528 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 P A E+ A A ++ D +Q L F AEL IR Sbjct: 529 PAARLAADAAERQASAETAMREDPVVQALGEAFGAELGTVRIR 571 >UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 Tax=Neisseria RepID=B4RLX5_NEIG2 Length = 736 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 245/702 (34%), Positives = 351/702 (50%), Gaps = 62/702 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+D+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 30 MTYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 89 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PCGVC +C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 90 SLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 149 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 150 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 209 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E IA++P ALQLL RAA GS+RDALSL DQAIA G G+V+ V M Sbjct: 210 QQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+ +V +GE ++A E AA + ++ L E+ LL ++A++Q P+ Sbjct: 270 IGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPS 329 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +D ++ + LA+TI IQLYYQ + G+++L APD G MTLLR LAF Sbjct: 330 ALAHDDPDSDI-LHRLAQTISGEQIQLYYQIAVHGKRDLGLAPDEYAGFMMTLLRMLAFA 388 Query: 361 PRM-------------------------------PLPEPEVPRQSFAPVAPTAVMTPTQV 389 P P P PE +A P++ Sbjct: 389 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEADAAQTPVQTASAAAMPSEG 448 Query: 390 PPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALER 449 + Q+ VP E R + SE + N A + Sbjct: 449 KTAGPVSHQENNDVPPWEDAPDKTETAAGTARTSAKSIQTASEAETPPENQVSKNKAADN 508 Query: 450 L--ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTP 507 AS+++ P+ + + E + +A P + Sbjct: 509 ETEASLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGFPDNDCPPEDGVEIPPPDWA 568 Query: 508 EL-----------------------AAKLAAEAIERDPWAAQVSQLSLP-KLVEQVALNA 543 + + WAA V + + A ++ Sbjct: 569 NVLPADTAGGGTDEEAEAGGIGGNNTPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHS 628 Query: 544 WKEE---SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV-EDDNPAVRTP 599 E + L + + R ++ K+ + L+ G + L D TP Sbjct: 629 AWTEYRSDTGLMVLAMTAEARATADKKRLDKIRDTLAQAYGLQLTLQTEDWRDEAGRETP 688 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + E +A+ + AD Q + + F A+ ES+ Sbjct: 689 AMQDKRVQAEDRQKAQALLEADPAAQKILQAFGAQWQPESLE 730 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 199/705 (28%), Positives = 292/705 (41%), Gaps = 72/705 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q H+ L N ++ R+ HA SG RG GKT++AR+LAK Sbjct: 1 MSYLVLARKYRPQTFDEVVAQPHITETLKNAINQERVAHALCLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G T PCGVC +C+EI VD+ EID AS VE R+L +NVQYAPA G + Sbjct: 61 AMNCVNGPTPEPCGVCASCKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYAPALGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+PVTILSRC ++ K + + Sbjct: 121 KVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYDFKRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L + E+ E ++L +AR + G +RDALSL DQ +A G+ S + V + Sbjct: 181 DDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYSTGEASFEKVLDI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +L +A+++ + + +++ ARG + + ++ ++L L + +V+ Sbjct: 241 LGVAGRKSLFALAQALLDRDVPACLTAVDQLYARGYDLKQVMADLLDHLRDLTVVKTVRD 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P L + M+E P + L + +P R+ +E+ L+R Sbjct: 301 PGPLLDIPPGEIQAMQEQVANASPAFVNQVLSLLFKEEAAVRLSPQPRLALEVALIRICE 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTA------VMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 P + + + A + P P+S AP P T S Sbjct: 361 ITPAVAIDSLVAALEVLASQPASKDQIINIGPASGPAPALPESGGGSAPPAPEETTASAA 420 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRAR-------------------------PVNNAAL 447 AA Q + A ++EP AA Sbjct: 421 EAAPQHEESTPVAASDPQTEPEPQEALAPEPEPEPEPEKEVTPEPEPEPEPPEEKPQAAP 480 Query: 448 ERLA---------------SVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 E A A P Y + P++ E Sbjct: 481 EPQAPVESAPPEPEEESIPEQAADSDAYQADDESPYYPEPDPTYAAADSEPIIPDMEPDY 540 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIER---------------DPWAAQVSQLSLPKLVE 537 P + + AA A DPW A + ++ Sbjct: 541 GPPQYETREVQPYVVQEAATPEEPAAPAPEPEEDEPEPPPFEGDPWKAFSKDVQEKSIML 600 Query: 538 QVALN--AWKEESDNAVCLHLR---SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + L KE L S+ LN Q L L G V+ I E Sbjct: 601 GLTLEKCRLKEYEKGRFVLETDGAPFSRDQLNTPENQTILTGVCKSLFGRKVQFVIEEPS 660 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P+ + E +A + ++ R F ++ E Sbjct: 661 EENRTAPVMNQAEKRRELEQEA----LNHPLVEEAVRIFGGKVVE 701 >UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPQ1_9PAST Length = 741 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 282/742 (38%), Positives = 392/742 (52%), Gaps = 100/742 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQ H+L AL+NGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQSHILIALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCVNGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI LE IL +E I + AL+ LA+AA+GS+RD+LSL DQAIA +G ++ V+ M Sbjct: 181 TQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAMSNGNITLNVVNEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 LG LDD+QA+ ++ + + NGE +M +I A +G +W+ L ++ LH+IA+ QL Sbjct: 241 LGLLDDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDWDLFLRDIAEKLHQIAVKQLLPK 300 Query: 298 ----------------SPAALGNDMAAIELRMRELARTIPPT-----DIQLYY------- 329 +P L I +ELA + P + Sbjct: 301 DRLDESNQLDFLATLITPDDLQFFYQVIVAGRKELAFSPTPRIGVEMTLLRALAFHPKLI 360 Query: 330 --QTLLIGRKELPYAP--DRRMGVEMTLLRA---LAFHPRMPLPEPEVPRQSFAPVAPTA 382 + + + + ++ VEM +L + + Q+ + P++ Sbjct: 361 NSNIVESTQPQSSVSSVNNQTAYVEMPVLSQNIKSQYASNLNTRTVPKTAQNTSQQIPSS 420 Query: 383 VMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG---------ATKAKKS 431 + P +P +S Q E+ S+ A + L + + KKS Sbjct: 421 NVVPNNMPAVDAQRSYSQPITLKNTVESDSEYSVALEALAELDKLDNTSLSSLQKEKKKS 480 Query: 432 EPAAATR--ARPVNNAALERLASVTDRVQARPVPSALEKAPAK----------------- 472 + + + R + E A + S +K P+K Sbjct: 481 DVVSLQKTIDRVTEETSPEMTALPVIETKPFEQKSFTQKQPSKLLKSSTQPRMIVSNSID 540 Query: 473 ------------------------------KEAYRWKATTPVMQQKEVVATPKALKKALE 502 E YRW+ + P + + + TP LK++LE Sbjct: 541 ISEESVEVRQSAVENEIEIDSDEVAEGENLAETYRWEWSNPELAKMQDGPTPSELKQSLE 600 Query: 503 HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQR 561 + TPEL K+ + + D W V L + L +++ALN E+S V L + + + Sbjct: 601 KDITPELREKVILLSRKEDVWTNIVESLDINNLTKELALNCALIEKSGGRVTLGIHTEKS 660 Query: 562 HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIAD 621 HL R + L E L+ +EL I D +TP ++ + Y+ +A+E + D Sbjct: 661 HLEKRTFVKNLTEELAKYYAEQIELEIRVSDE-ITQTPTDFYRQTYKMLREKAKEDLQQD 719 Query: 622 NNIQTLRRFFDAELDEESIRPI 643 +Q F+ ELD S++P+ Sbjct: 720 KKLQLFLTEFNGELDLASVKPV 741 >UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Bacteroidales RepID=C3QNI8_9BACE Length = 621 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 158/637 (24%), Positives = 264/637 (41%), Gaps = 22/637 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ ++E I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-SP 299 L LD + L + +E + L N+ +G + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVT 302 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q + QQAP P + + A Sbjct: 363 TTEGDDVSGGRGPKKTIKPVFTQPAAAQQPQVASATQVQQAPVHSSPSSVTTQAANGTTA 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q Q + + PA+ A + + + + + + K Sbjct: 423 QHPQASAAVQPGAPASPGAASSAPSQGAGVAQTAKEERKIPVMKMSSLGVSIKNPQRDQV 482 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + V P+ + + E+D A ++ ++ Sbjct: 483 SQNATTTYVPKVQQPEEDFMFNDRDLNYYWQEYAGQLPKEQDALAKRMQ------MLRPA 536 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVRT 598 LN + + + + + +L + L S V +T+ + Sbjct: 537 LLN-----NSTTFEVVVDNEFAAKDFTALIPELQDYLRGRLKNSKVMMTVRVSEATETVR 591 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 P+ + + + L+ F EL Sbjct: 592 PVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 620 >UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XQ9_COLP3 Length = 715 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 268/716 (37%), Positives = 370/716 (51%), Gaps = 76/716 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++GQEHV+ LAN LS R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT PCG CD C +I+QGRFVDL+EIDAAS+TKV+DTR++LDNVQYAP+RGRF Sbjct: 61 SLNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF+LATTDPQKLP+T+LSRCLQFHLKAL V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L IL+ E ++HE L LLA+AA GS+RD+LSLTDQAIA G G ++ + M Sbjct: 181 KQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + LV +++ + + +M L E A+ + L E++ L H+IA++Q+ Sbjct: 241 LGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAELIQLFHQIALMQIVEQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + L ++ ++ + D+QLYYQ L GRK+LPYA D + +MTLLR AF Sbjct: 301 PFDLPADLLALL-KKFSQAMSAEDVQLYYQISLNGRKDLPYAFDEQAAFDMTLLRLFAFK 359 Query: 361 P---------------------RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 P ++ + A A T+ + + Sbjct: 360 PMQKSQLTNESTIDNIEQNTAISFDDDNLSKTTETLSNNADIAKAAVTEAVVESFAEVDI 419 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + + T Q Q L Q A + K+SE + + + + E A V Sbjct: 420 SDSAAATDNTQQTELNEQMLAIEQQADELKQSENNSLNQTPAQHVVSQEVKAPQQVPVVE 479 Query: 460 RPVPSALEKAPAKKE------------------------------------------AYR 477 E R Sbjct: 480 SYKEKQNTAPIVPNEQVGQLSIHSPVGSVLATRNMLRSRKKELEKQTKKSSDATLRQPNR 539 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER---------DPWAAQVS 528 + Q + PE ++I+ D WA + Sbjct: 540 ADNSKNKTQDSVNATVKPQVVSTESLVIAPEPDLPFHQDSIDPAKVTKANQVDKWAHMID 599 Query: 529 QLSLPKLVEQVALNAWKEE--SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L + Q+A++A E +D+ + L L + RHL+ A Q L A+ + + Sbjct: 600 SMQLTARIRQLAIHATISEKSTDDNLILKLDQATRHLSTEIAHQHLQSAICEFLARQITV 659 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T+ + P + + I +++L A+ + D + L+ F A L+EESI P Sbjct: 660 TLDIVEETVAD-PYQIQGQINDKRLEYAKTLLKEDAVVIALQETFQASLNEESISP 714 >UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JMX9_9BACE Length = 623 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 165/645 (25%), Positives = 275/645 (42%), Gaps = 36/645 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS VED R L++ V+ P G++ Sbjct: 63 INCLHPTADGEACNECESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE++ +EHI EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ Q+V Sbjct: 183 NDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGHITYQSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A +E + NE +G + + + + + + Sbjct: 243 LNVLDYEYYFKLTDAFLENRVSDCLLTFNEVLKKGFDGNHFITGLTSHFRDLLVSRDDET 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R + A+ P + + + ++R+ VE+TL++ Sbjct: 303 LQLLEVGASIRDRYQAQAQKCSPQFLYKAMKLCNDCDLNYRVSKNKRLLVELTLIQLAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +P + S+ Q + + P P+ T +V Sbjct: 363 TGDNDVPG------GGQGPTKQTLKPAFNQGQPSSSSSQASNSQPYPQATHEVSGNYGST 416 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q A + P +AA+++ A+ T V A PS + KA +K+ K Sbjct: 417 APKQPAKPSA-----------PNGSAAVQQPAAPTTNVSAAAHPSPIPKANTEKKIPVMK 465 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP-----WAAQVSQL---S 531 A + + + P+A + A + + I + W ++L Sbjct: 466 AGSIGISIRRQAVQPQAANNGPVNTAATVPADQTYEDYIFNEKNLNYYWREFATRLPKEE 525 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVE 590 + + + + + + ++ L +++T+ Sbjct: 526 AANAARMMNMQPHLLKDQTTFEVAVDNDMVQKYMSQLAPQIETHLRQQLHNRKIKMTVRV 585 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + ++ L+ F EL Sbjct: 586 SAANENLRAYSHVERFQMMS--------KKNPSLLKLKEAFGLEL 622 >UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY35_DICNV Length = 665 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 226/660 (34%), Positives = 335/660 (50%), Gaps = 27/660 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+TF ++VGQ+H+ AL+ L R+HHAYLF+GTRGVGKTS+AR+ AK L Sbjct: 2 YQVLARKWRPKTFRELVGQQHITQALSYALDHDRLHHAYLFTGTRGVGKTSLARIYAKSL 61 Query: 63 NCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G +A PCG C++C EI+QGRF DLIE+DAASR +++T++LLDN+ YAP +GR+K Sbjct: 62 NCLINGTSAQPCGQCEHCLEIDQGRFPDLIEVDAASRRGIDETKELLDNLPYAPVKGRYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM +R SFNALLKTLEEPP HVKF+LATTD QK+P T+LSRCLQFHLK ++ E Sbjct: 122 VYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPTTVLSRCLQFHLKNINPE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+R L HIL E I +E AL LLA+AA GS+RD LS DQAIA G G V T V+ +L Sbjct: 182 QLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFLDQAIAYGQGVVKTDDVAYLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + Q L+ + E++ V A++ E A ++ +L + L +I + QL Sbjct: 242 GAVPTAQIYRLLTKIAESDARAVRAILTELDAFSPDYMDVLRHVFQGLQQITVAQLQAQQ 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 N I+ + LA+ +P +QL+YQ + + +PY PD R+ +EMT LR +A P Sbjct: 302 NPN---EIDQTLVRLAQQLPVELVQLWYQIISDAWQSMPYQPDMRVALEMTFLRMIALQP 358 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P P + + +AP ++ +P+ L + Sbjct: 359 LLPETTISEKHIIPEPDNDVDLPPWRDDESEMNTAPLESSENDVPDNNDVDLPPWHDDES 418 Query: 422 VQGATKAKKSEPAAATRA-----RPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 T + A P + LE + + VP+ + Sbjct: 419 EMINTAPAEPLENDAPDNNGVDLPPWRDDELEMMNTAPAEASENDVPNDNDADMPPWRDD 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP-------------- 522 + + P L EL + Sbjct: 479 ELEMINTAPLESSENDVPDNNDVDLPPWHNDELEMNTVPLKSSENKSVIQLEQAVNQLQL 538 Query: 523 WAAQVSQLSLPKL-VEQVALNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK 580 W+ ++ L + + ++ + + ++++ L + S+ N L LS Sbjct: 539 WSQFLNTLPVEDVFLQSLVEQSIPVSFQNDSLQLAVLSAAASWVNEQRLADLTRILSASC 598 Query: 581 GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + ++I DD + T RQ ++ A++ ++ + ++TL F ++ +SI Sbjct: 599 ARKIAVSITFDDT--IATSAMLRQQESDQMHQMAKQKLLQNPVVRTLMTDFHGKIMRDSI 656 >UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 Tax=Pseudomonadaceae RepID=Q48KQ6_PSE14 Length = 737 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 246/537 (45%), Positives = 316/537 (58%), Gaps = 2/537 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IAR++AK Sbjct: 1 MSYQVLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+TPCG C C+EI++GRFVDLIEIDAASRTKVEDTR+LLDNVQYAP+RGRF Sbjct: 61 CLNCETGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP +VKF+LATTDPQKLP TILSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L H+L E++ E AL LL RAA+GS+RDA+SLTDQAIA G+G+V V AM Sbjct: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ A++E + V+ + A +G +W +L E+L +LHR+A+ Q P Sbjct: 241 LGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N R+ LA+ +P D+Q YYQ LIGR++LP APD R G EM LLR LAF Sbjct: 301 GVDNGHGD-RDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P + T P ++ A + Sbjct: 360 PADNYDAPRQPLKPVGISQATVDSRKAVADATPVASVAPAVSTAPVMAAPDPAFEALPPA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T A ++EPAA ++P + PV ++ Sbjct: 420 AAPMPTAAVRAEPAAQPESQPQAQPEPVEEVDLPWNEPKSPVAEKNAESAPDTGTVAEPV 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI-ERDPWAAQVSQLSLPKLV 536 PV++ + P+ A+ + E+ A + + + Sbjct: 480 AEPVLETVSEQPDLTPMPTPAPASPVPDAPEAEPAQPVAEQQVTPAMLEAIPDSAYL 536 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 95/290 (32%), Gaps = 8/290 (2%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P EV P +P A P A A V + L Sbjct: 441 QAQPEPVEEVDLPWNEPKSPVAEKNAESAPDTGTVAEPVAEPVLETVSEQPDLTPMPTPA 500 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLAS------VTDRVQARPVPSALEKAPAKKE 474 A ++EPA + V A LE + D + + P + P + Sbjct: 501 PASPVPDAPEAEPAQPVAEQQVTPAMLEAIPDSAYLSMNPDSMSSNSGPMGRDDEPPADD 560 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Y + PE A W +L + Sbjct: 561 DYVEPDIDIDPASYSYLDELAHESVVELEAVEPEPAPAAKPATGLAADWLEVFPKLPISG 620 Query: 535 LVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + +A N ++ LHL + L N Q++L +AL+ G T+ L+I Sbjct: 621 MTGSIAANCTLMAVDGDSWLLHLDPAHSALFNSTQQRRLNDALNQYHGRTINLSIEL-IK 679 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P TP + + E+ QA SI AD IQ + + F A + E++I+P+ Sbjct: 680 PEQETPAQAASRLRAERQRQAEASIQADPYIQQMLQQFGAVIREDTIQPV 729 >UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYU5_HALNC Length = 591 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 255/655 (38%), Positives = 346/655 (52%), Gaps = 85/655 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++FA++VGQ HVL AL N L R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFAEMVGQGHVLQALTNALDQSRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++TPCGVC C EI+QGRFVDLIE+DAASRT V+DTRDLL+NV YAP RGRF Sbjct: 61 ALNCEHGISSTPCGVCSACVEIDQGRFVDLIEVDAASRTGVDDTRDLLENVAYAPVRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHM S+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+L+AL + Sbjct: 121 KIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLRALPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +L +E+IA EP AL L+A AA GS+RDALSL DQAIA G++ T VS + Sbjct: 181 SQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLLDQAIAFTGGKLDTVQVSQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +++A+ + + +R+ AL++EA R +E LL + + +H++AM Q + Sbjct: 241 LGLSDHQIIWDMIDALYQQSADRLFALVDEALDRAVEPAILLAQFIESIHQLAMGQWIQS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++I P +QL+YQ GR+++ ++P+ R+G+EMTLLR LAF Sbjct: 301 MSAAANPPPDE-----LKSIDPQLLQLWYQIATTGRRDMAWSPNARIGLEMTLLRMLAFQ 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + A + A P + V AA+ + + Sbjct: 356 PGG------------------------EASNGAVKATEPAAVHSYPSDSRSVSAAKTKPE 391 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 RV + +SEP R+Q E A+ + K+ Sbjct: 392 RVASSITQPESEP------------------ETKARLQKSAEHRVAEPMVAQTMPVQDKS 433 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V + L E ++ + +A Sbjct: 434 DHDVPDHSG------HARAQLTDLPWHEWVERIPGQPG------------------RNLA 469 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR--- 597 D + L + + N A++ L LS T ++ I+ N Sbjct: 470 DRCHINIVDGQIQLVVAPQYEVIANARARESLLSQLSK-LADTSKVKIIIGQNDTASDRA 528 Query: 598 ----------TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TP E R Q R+S++ +Q L+ A+L EESI P Sbjct: 529 TSEISAQAAITPAERRNQEEINLQQQRRQSVVQHPVVQLLQEQAGAQLVEESILP 583 >UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N3Y5_9GAMM Length = 569 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 246/643 (38%), Positives = 345/643 (53%), Gaps = 75/643 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++F +VVGQ+HVL AL NGL R+HHA+LFSGTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFEEVVGQQHVLRALINGLDQNRLHHAFLFSGTRGVGKTTLARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++TPCGVC +C E++ GRFVDLIE+DAASRTKV+DTR+LLDNVQYAP++GR+ Sbjct: 61 SLNCEQGVSSTPCGVCQSCTEVDSGRFVDLIEVDAASRTKVDDTRELLDNVQYAPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFL ATTDPQKLPVTILSRCLQF+L+ L++ Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSRCLQFNLRRLEL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L ++L +E I EP AL+ LARAA+GS+RDALSL DQAIA G G+V++++V M Sbjct: 181 TQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAIAFGGGEVTSESVFQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ DQ + +++A+++ +G+ ++A E AA G ++ + +L L +IA +QL P Sbjct: 241 LGSISQDQLILILDALLKQDGKALLAQSAELAALGRDFHVVFDFLLSALQQIATLQLVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++ ELA P IQL YQ L G+++L +A D + G +MTL+R L+F Sbjct: 301 --LEPVEANSPQLTELAAQFDPETIQLLYQIALHGKRDLSWAADPKSGFDMTLMRMLSFQ 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P + P V +P S+ + + Sbjct: 359 PTTPPEVGDEPLKKSPPPRKPVVSSP---------------------PASEAMTTKSVSV 397 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A K EP A + + + P P W Sbjct: 398 STSPAVKQALIEPDIAPKPQIKPDVIAAN----------EPEPIDNTLISVDLSPANWTQ 447 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 ++ + ++ E+ + +Q Sbjct: 448 IIAELKLSALAHQLAENSALVKCEQQSVYLSLSPELGHLA------------TDNSKQKL 495 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 A ++ + L + G T+ + Sbjct: 496 QKALSKKLGQDLKLVFADADTTFET---------------GPTLAVE------------R 528 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +QA+ + QA ESI D ++ ++ F+A + E SI+PI Sbjct: 529 AEQQAVKQ---QQAIESIHNDPTVEIIKNTFNARIIEHSIKPI 568 >UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH32_BDEBA Length = 621 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 182/641 (28%), Positives = 293/641 (45%), Gaps = 55/641 (8%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV+ARKWRPQ+F DVVGQ H+ L+N L GR+ HA LF+G RG GKTS AR+LAK Sbjct: 18 SYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKA 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L C PC C +C EI G +D+IEID AS V+ R+L D V + P+ G++K Sbjct: 78 LRCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYK 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP HV F++ATT+ K+P TILSRC +F + + Sbjct: 138 IYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTR 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L+ I + E + + AL ++AR +GS+RD+ SL DQ I +G ++ +V +L Sbjct: 198 SITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEIL 257 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + A+++ N + V+ +I + AA G E ++L ++ + ++++S A Sbjct: 258 GLTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMIRNLLLIKVSEAQ 317 Query: 302 LGNDMA---AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + E+A+ +P DI + + L G ++P A D R+ +E+TLLR + Sbjct: 318 ASQILEMPDSELQALSEMAQRLPEEDIHMLFDMALKGGSDIPRAQDPRIVLEVTLLRMAS 377 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L + + P P P V LP + Q+ Sbjct: 378 APKLVDLK--TLLQGGAIPSHSAGGARPY------------VPPVSLPVKGHDRIEESQK 423 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + +A K+ A+ A + A A PVP+A + Sbjct: 424 VLDGPTGLEAMKAALNKASSAASSLKSNPAPAAKPAATAPAAPVPAAQPTPVVES----- 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 PK + E+ L + VE Sbjct: 479 --------------KPKIASGSTSKERWVNFVELLRQDDAL------------FAAKVEN 512 Query: 539 VALNAWKEESDNAVCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + +E + L + + + + ++KL + G+ ++ + Sbjct: 513 LL---FVKEEGKLISLGVPVKLAFLKDQMADAQVRKKLQGFIDSYWGAGYSFEVLMSRDQ 569 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + +Q + R II + ++ + F ++ Sbjct: 570 VGESAQAIQQKKVQMAEEDLRNKIIENPMVKAAQTVFKGQI 610 >UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Bacteroidales RepID=C6ITP2_9BACE Length = 619 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 161/638 (25%), Positives = 268/638 (42%), Gaps = 26/638 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ +E+I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L + +E + L N+ +G + + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSKDAAT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q ++ QQ P + AA + Sbjct: 363 TTEGDDVSGGRGPKQTIKPVFTQPAAAQQPQVASATSAQQTTVHTAPSPATAPSAANTAV 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTD-RVQARPVPSALEKAPAKKEAYRW 478 ++ Q + + + P A + V K P + +A + Sbjct: 423 RQPQVSVASGAAAPVNTASAPSQSAGISSISKEERKIPVMKMSSLGVSIKNPQRDQAAQN 482 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A V Q + + E A +L E + A ++ + + V Sbjct: 483 TAKNNVAQVQIQPEEDFIFNDRDLNYYWQEYAGQLPKEQV------AIAKRMQVIRPV-- 534 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR 597 + N+ + + + + +L L S V +T+ + Sbjct: 535 LLNNST------TFEVVVDNEIAAKDFTALIPELQTYLRGRLKNSKVAMTVRVSEPTETV 588 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + + + L+ F EL Sbjct: 589 RAVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 618 >UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BXI6_DESAD Length = 638 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 176/650 (27%), Positives = 287/650 (44%), Gaps = 24/650 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQTF +V GQE V T L+ + ++ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSTSNLTAKYRPQTFGEVAGQEAVKTILSRAAAQDKVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC CDNCR+I G VD++EIDAAS KV+D R L +++ YAP R+ Sbjct: 61 ALNCKNAPTAEPCNECDNCRQITAGVGVDVVEIDAASHGKVDDARRLKEDIGYAPIEFRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP H F++ATT+ K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHYAFKMLTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ L +ILN E I E A+ L+A+ GS+RD++SL Q +A G ++ + V ++ Sbjct: 181 DELIAHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLLGQVLALGSEKLLEEDVRSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +L++A+ + V + + RG++ + E+ + ++ S Sbjct: 241 LGLAGRDVFFTLMQAIHGRDLVAVGDTVQQVLGRGLDLGFFIRELGNCWRNMFLLNQSGE 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + A+T + I +Q + G++++ + + M +E+ LL Sbjct: 301 RAVPLLGLSSEEAAEFMKWAQTFDRSFIHACWQMTVDGQRKVMTSLEPAMALELLLLNMA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP---TVPLPETTSQVLA 414 + + + + P P P + P +T + Sbjct: 361 SLTDLISMERAGALASAAPSPQQAPQAAPAVPNQAPPQTPPPSQPMGQQPGGQTPPWQNS 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 +Q +Q+ RP+ A S+L A + Sbjct: 421 PQQGMQQQVPPQNQGMQPQGMGANGRPMGRTESGSPAGNRSANDMGADDSSLPDAAGLQT 480 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P + + P + P A ++ + + + V+ Sbjct: 481 DSDLNSLVPQSENPAPESIPPLERVPEPAPAKPSFPASVSG-PRDFEGFLQYVADSGANG 539 Query: 535 LVEQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + E D + L +S Q + R ++ + +S G VEL I Sbjct: 540 STSGL-SKCKGELIDGKLVLTCANSFHQGQVAGRESRGVVERLVSEYFGPEVELEIQISS 598 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R+ + R+ + + +++ + F A + SI P Sbjct: 599 KGKRRS------------RQEIRDDVESHPDVKRVMDAFGASII--SIDP 634 >UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQ74_ACIBL Length = 632 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 192/644 (29%), Positives = 307/644 (47%), Gaps = 31/644 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ F++V+GQ+HV L N + RI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MSYQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC++ + PCGVCD+C+E++ G+ VD+IEIDAA+ +++ R+L + +Y PAR Sbjct: 61 ALNCQSADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARD 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y++DE H ++ +FNALLKTLEEPP H+ F++ATT+P+ +P TI SRC F A+ Sbjct: 121 RFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I QL I +E I E AL +LA A +GS+RDALS+ DQAIA+ Q+ T V Sbjct: 181 KFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVR 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ D ++ + + E V+ I++ G + + L + +++ Sbjct: 241 GLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRNAMVAKVA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +AL + R+ +A D+ + Q +L +L Y ++R +E+ LL+ Sbjct: 301 GKDSALLQISSDERERVARVAEQFSEEDLARFLQIMLRTHSDLGYKQEQRFHLELGLLKL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + +PL E S AP + V AP A + P P +S+ AA Sbjct: 361 VHAQRMLPLEELLSGSASAAPSSAPRASVAAPVSRPSSPAPSAATSRPSPFESSRTAAAP 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + + A A P A Sbjct: 421 RPSPFEVDRARKNEPKAEADAEITAKTPEFTAPAA------------------PTPMSAA 462 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK-- 534 + P +V + A+ P AA A E A +++L Sbjct: 463 PARGYEPQSAPAPMVTSSVGSAVAVAEVAPPPPAAAPAGETNIPAIRDAVLNELETAGQN 522 Query: 535 -LVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKL-AEALSMLKGSTVELTIVED 591 LV + W ++ V + L + L+ +KL A++ G ++ ++V Sbjct: 523 VLVHTLETGVWAANANEITVKVALSPAMIDLSMGPEVKKLVTAAVNKATGRPLKFSMVGG 582 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 +PA R A+ ++A + + ++ F AE+ Sbjct: 583 ADPATLAKPAPRTAVGPSARSRA----MQHPLVNYMQEKFGAEV 622 >UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 Tax=Desulfuromonadales RepID=Q39Q40_GEOMG Length = 582 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 180/557 (32%), Positives = 275/557 (49%), Gaps = 8/557 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQTF+D+ GQEHV L N + GRI HA+LF+G RGVGKTS AR+LAK Sbjct: 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G++ PC VC C EI G VD++EID AS T V+D R+L +NV+Y P+R R+ Sbjct: 61 ALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ +L HI+++E IA +L ++AR +GS+RD+LS+ DQ +A QV + V ++ Sbjct: 181 GKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L A+ + V+ ++ G E++ L + +++ Sbjct: 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGD 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + A +R+ A ++P D+Q + LL EL + R+ +EM L++ Sbjct: 301 GTDLLDLSEAELATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMAT 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-LPETTSQVLAARQ 417 P +P+ + + V AP +PT PE T+ R Sbjct: 361 LAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ + A + E A + ++ + R + +P A R Sbjct: 421 AERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGAKPRLGSMLEQGSPLVVSADR 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL-----AAEAIERDPWAAQVSQLSL 532 + P + AL+ A+ + + + + Sbjct: 481 LEIGFPEGAFALASLRDSDSQAALKELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRV 540 Query: 533 PKLVEQVALNAWKEESD 549 K +Q L Sbjct: 541 EKEQQQTVLKQAATSHP 557 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 16/197 (8%) Query: 455 DRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 R Q R P A +P A A TP + E A P A E A ++ Sbjct: 388 ARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRR------EEAKPVS 441 Query: 515 AEAIERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVCLHLRSSQ---RHLNNRGAQ 569 D WA V+ + P+L + + S + + + L + +Q Sbjct: 442 EPRRTGDSWADFVALVKGAKPRLGSMLEQGSPLVVSADRLEIGFPEGAFALASLRDSDSQ 501 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTP---LEWRQAIYEEKLAQARESIIADNNIQT 626 L E + L + A P LE ++ E++ +++ + + Sbjct: 502 AALKELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRVEKEQQQTVLKQAATSHPAVAD 561 Query: 627 LRRFFDAELDEESIRPI 643 F L E + P+ Sbjct: 562 ALDVFGGTLAE--VEPL 576 >UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 Tax=Firmicutes RepID=D1BPK5_VEIPT Length = 895 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 163/651 (25%), Positives = 278/651 (42%), Gaps = 33/651 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RK+RPQTF DVVGQ V L + ++ HAYLF+G RG GKTS+A++ A+ Sbjct: 1 MAYIALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T PC C CR I G+ +D++EIDAAS +++ R L ++V++ P GR Sbjct: 61 AINCEHGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ ++NALLKT+EEPP HV F+ ATT+ +KLPVTI+SRC ++ + + Sbjct: 121 KVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L ++ +E + A QL+A A+G LRDALS+ DQ G ++ Q V + Sbjct: 181 DDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + ++A+ +G +V++ +++A A G + ++ ++ + + + +++P Sbjct: 241 IGLVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPD 300 Query: 301 ALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL----- 354 A A + A ++ ++ Y ++ + + R +EM LL Sbjct: 301 ADELKVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAK 360 Query: 355 ----------RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 R A ++ + V PT PQ Sbjct: 361 LGSVDESLEDRVYALESAERSERNDLLNRMAQLEQRGPVAAPTMYGANAFVPPQGGYANS 420 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + V + Q T + P N + P + Sbjct: 421 FVSVDTTVTTQDAPMSSTQNTTIDAVPPSSGMGMTPPPMNGVGMTPPPMGAPGSTPPPMN 480 Query: 465 ALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + AP P + + +A K + +E I Sbjct: 481 GVGMAPPPMGGV---GMAPPPNNGDTDSRKPTRNQAKGRAKKGVSTQAIISEQILSAQEY 537 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQR--------HLN---NRGAQQKLA 573 V Q ++ K ++ N +++ S+ HLN N + A Sbjct: 538 RNV-QSNVIKYLKDSNRNMTSTVIGQGQLVYVDQSKAVMAFKNTLHLNVMTNEVNLAEAA 596 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI 624 +A + G V + I D V + ++ +A + + Sbjct: 597 DAFTYTLGYAVHVEI-VDALTQVYKDYKKAAGSTTQRQVKASQRPQE-PMV 645 >UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMH2_MOOTA Length = 589 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 192/605 (31%), Positives = 284/605 (46%), Gaps = 43/605 (7%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ YQ L R+WRP+TFA+VVGQEH+ L N L GR+ HAYLF G RG GKTS A++LA Sbjct: 1 MAQYQALYRQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + +NC PC C NCR I G +D++E+DAAS +++ R+L++ + P GR Sbjct: 61 RAINCLAPREGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPVEGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHML++ +FNALLKTLEEPP H F+LATT+P+K+ TILSRC +F L Sbjct: 121 YKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVS 238 V+ I +L+ + + EP AL LL+R A G LRDALSL DQ +ASG G V+ V+ Sbjct: 181 VQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASGTRGPVTAGQVA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LGT D L+L +A+ +G V+ L+++A A GIE LL ++L + ++++ Sbjct: 241 VTLGTARLDTLLALTDALATGDGAGVLNLVDKALASGIEPRRLLEDLLDHTRNLLLLKVD 300 Query: 299 PAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + ++ AR + + L G L + R+ +EMTL Sbjct: 301 PGAGSLTGLLPEEVEQVAAQARQFDHHRLLDLMERLQQGGAALRRSNQPRVILEMTLAGF 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L VAP + A A P T + +A R Sbjct: 361 L--------------------VAPGPSLEGLARRVAELEARLAALEGSAPSRTREKVATR 400 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + + A S R + +A + A Sbjct: 401 NQGEGGRPPVAPGSRADAGGQERGNSGPLEAPGAGSPAGRARVINRSREFPQAAGRDRAG 460 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T + A+P L+ A+ E PE+ A E+I+ L Sbjct: 461 LAGPETATGLEPGSPASP-GLELAVVQEHWPEVLAAARRESIQ---------------LQ 504 Query: 537 EQVALNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN- 593 + + + L +++ L G +QK+ +AL+ + G +++ I Sbjct: 505 AFLREGEPVAIDGDTLTLAVKADFHRGMLEQPGNRQKVEKALAAVFGRPLKVVITSGKPS 564 Query: 594 PAVRT 598 P T Sbjct: 565 PPGDT 569 >UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=Q6FAW7_ACIAD Length = 711 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 243/715 (33%), Positives = 339/715 (47%), Gaps = 81/715 (11%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL + L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETGIT+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E I + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + RV L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +LA+ + D+QLYYQ GR EL + + G EM +LR LAF P Sbjct: 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET----------TSQV 412 + + + S + T E SQ Sbjct: 362 SIDEVTVHASSQPSELQINQLPPAADSETDSSSRSELQHTNNRIEPDLEGSVVISVISQE 421 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALER----------------------- 449 + + Q V T ++ + E+ Sbjct: 422 AESFEAEQVVNHTTDDCQTAKTRQNKDVSSAVVEAEQENILVFNANSDDIVGIEQNKTAV 481 Query: 450 -------------LASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQ--------- 487 Q +P+ + + + T P+ Sbjct: 482 VLAAQDMPFFPVEEERQIANHQHIALPAERVEQADTYQPEPHQVTQPISDSSSEESSLDA 541 Query: 488 -KEVVATP-------------KALKKALEHEKTPELAAKLAAEAIER----DPWAAQVSQ 529 + +TP + A + E P+ KLA + +E + W Sbjct: 542 LADDESTPLIDLSIDTNEHKVQVTSAANDLEVMPQDILKLAEQELEGEWTLEKWEYWFRT 601 Query: 530 LSLPKLVEQVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEAL-SMLKGSTVELT 587 L V+++A + D ++ G +L AL S +K Sbjct: 602 SQLSPAVQELAQYGLMSGNIDGICTFNIPQQY-----EGMLSQLQHALESEVKSRWPNTQ 656 Query: 588 IVEDDNPAVR-TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 TP + E+ +A + + + ++ L FD +L ++ Sbjct: 657 FTVKYGKVNEITPYIKQIERKEKAFQRAIDLLQQNPVVKDLLNTFDGQLQNIQLK 711 >UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PSN6_CHIPD Length = 634 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 159/642 (24%), Positives = 281/642 (43%), Gaps = 18/642 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RPQ F+ VVGQ H+ T L N + ++ HA+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE C C +C +G ++ E+DAAS V+D R L++ V++AP G++ Sbjct: 63 INCENLQPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F K + + Sbjct: 123 KIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFKRITI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I ++EHI E AL L+A+ +G +RD+LS D+ ++ G ++ Q Sbjct: 183 QDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGGHLTYQNTLEH 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D +++ +++ + + + +E +G E + L L + M + Sbjct: 243 LNILDYDYFFRVMDTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKV 302 Query: 301 A-LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L ++ R +++A + P+ + L A ++R+ VEM L++ Sbjct: 303 LHLVEVSGNLKDRYKQMAGKVSPSYLITALHLLNETEINYRMARNKRLHVEMALIKLCFL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L + + P ++ A +A T+ +AA + Sbjct: 363 QQAVTLVSDDQTGEVVKKKLVADGAQPQKLRSSFAQAAPEAKPAAGQAATTTSIAANEAR 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++ P T+ + + + K + Sbjct: 423 LTIETPVNNTGVPPQTVTQPAQPVQQQPPVSQAPANTQHTSSYNTTTTATAPK--PAQAP 480 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 P + + A K+ + K + A ++ D + + Q + +V + Sbjct: 481 TNAPKLTGLAAMKEALASKQQTQPAKA-VIPMTAGALSVYWDEFIDRFRQANKMTVVSNL 539 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST-VELTIVEDDNPAVR- 597 L K +S +C+ R+ + + ++ + + LT+ D++ + Sbjct: 540 QLATIKLQSAEEICIVSRNIVQFRFMEEEKLAISAFFKDKFQNPGIVLTLQLDESQQTQD 599 Query: 598 ---TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 PL R+ + ++ L+ + ELD Sbjct: 600 IGPAPLSSREQFLKMTEKY--------PLVKELKEKLNMELD 633 >UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibrionales RepID=B7VL96_VIBSL Length = 752 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 277/652 (42%), Positives = 366/652 (56%), Gaps = 47/652 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP F +VVGQ HVLTAL N LS R+HHAYLFSGTRGVGKT+I RL AK Sbjct: 1 MSYLALARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGIT+TPCG C C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGITSTPCGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+HIL +E++ EPRAL ++A AA+GS+RDALSL+DQAIA G+G V T V+ M Sbjct: 181 DNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIALGNGNVVTDTVAHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ L+EA+ ++ MA I A G+EW+ LL ++ LHR+AM Q P+ Sbjct: 241 LGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQLHRLAMYQALPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ +++T+ P DIQLYYQ +L GR++LP +P R+G+EM +LR LAF Sbjct: 301 TLDKAQPDA-ERLELMSKTLSPQDIQLYYQIVLKGRQDLPLSPTARVGIEMVVLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + QS +P A P Q Q + Q+ + P+PE QV + + Sbjct: 360 PAEQTVATAISTQSTSPAPAPAAQNPVQNQVQGVA---QSMSQPVPEPRQQV---QAPVG 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + + + Q P AY + Sbjct: 414 SQPQVQQQAPVQQPVQQQQQNPAQYSDSQGYADHSGNQGYPEQDYPHSQYDVPPAYDERP 473 Query: 481 T----------------TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + +PV Q +TP ++ +P + + R A Sbjct: 474 SYGADQPQQQQTNYQSQSPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLRSQRRSSAA 533 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRG-AQQKLAEALSMLKGST 583 + K A + + +Q+H + + L+ + + Sbjct: 534 TDNKGSTPKKAKATSAKTSVLDRV----------AQQHGGSERVSPASLSASSTE----- 578 Query: 584 VELTIVEDDNPAVRTPL-----EWRQAIYEEKLAQARESIIADNNIQTLRRF 630 + D+ P P E + + ++ +A E I + L + Sbjct: 579 ---KVTNDNEPYRWKPSKPVVKEVSKELTPTQIKRALEHIKTPEMVDKLLQE 627 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 3/287 (1%) Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A+ R + +Q + + V P+ P P + +Q P + + Q Sbjct: 468 AYDERPSYGADQPQQQQTNYQSQSPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLRSQ 527 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP-VPSALEKAPAKKEAY 476 + K + A AT A+ + + ++RV S+ EK E Y Sbjct: 528 RRSSAATDNKGSTPKKAKATSAKTSVLDRVAQQHGGSERVSPASLSASSTEKVTNDNEPY 587 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 RWK + PV+++ TP +K+ALEH KTPE+ KL E+I +D W+A + +L KLV Sbjct: 588 RWKPSKPVVKEVSKELTPTQIKRALEHIKTPEMVDKLLQESIAQDEWSATIQKLETAKLV 647 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 EQ+ALN+ ++D ++ L LR+SQ HLN AQ +L ++L+ + G L++ + Sbjct: 648 EQLALNSVFAKNDTSITLTLRASQAHLNTDRAQSELLQSLNTVLGEECHLSVEIGE--GG 705 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TPLE R+ +Y+ KL A ++ D N+Q + R F AELD +S+RPI Sbjct: 706 ETPLELRERLYQGKLKDAFTALENDANVQFIERRFAAELDRDSVRPI 752 >UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Tax=Bacteria RepID=B4RU47_ALTMD Length = 930 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 247/614 (40%), Positives = 342/614 (55%), Gaps = 12/614 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV++A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G A PCG C+ C+EIEQG +VDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 SLNCEEGQGANPCGQCNTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKAMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL +E +A E AL LLARAA+GS+RDALSLTDQAIA G QV V+ M Sbjct: 181 EQIVGQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIAQGGNQVMASVVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ A+V + V+ L+N+ A + +++ + E+ LLH+IA+ Q P Sbjct: 241 LGLMDKNQLLKVIHAVVNKSPAEVLQLVNDIAEQAPDYDNVHSELASLLHQIALTQWVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + + +LA+TI +QL YQ L GRK+LP+A D + EMTL+R +AF Sbjct: 301 ACKLETTSAKA-IFQLAKTISAEQVQLLYQIALQGRKDLPFAADGKSAFEMTLMRMMAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ E ++ V + + Q+ P + T + Sbjct: 360 PNAPIAETVDEIENGRSEHNLPVNHASPSGGPGNVSKQEEPPLSETSAT---------ID 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + +A+ + + P + A + A + + Sbjct: 411 QGEAPIEAQPEHEPTSPKTPPQSPIADASTDLPSSAPAETVANEEEPTAVSNTQTNTAAE 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T + A+ ++ + + A A+ + P A + + P L ++ Sbjct: 471 TDIAFEANLSSASASEAQEPQSNASVEDEEASPVAQYFDEPPLDAYMDDM--PPLQDESG 528 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + S++ L + L + L K + N ++ Sbjct: 529 HYELDTPESERIVEPSPSAEEQLTSTADMLALRQKLKQKKAQDADAKSNSAANAKTQSAS 588 Query: 601 EWRQAIYEEKLAQA 614 E + K A Sbjct: 589 EIQARFTRSKTDSA 602 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 93/289 (32%), Gaps = 6/289 (2%) Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L P + + A T + S + L Sbjct: 644 LEAAPESEQSQDSITDHQSANTLNDGSDTQLLGGSEQASTNADFADNNDSGHDAFALDDF 703 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE---KAPAKK 473 ++ P P + + PVP A E K Sbjct: 704 EEDMPFSNDESDANYNPNPHVEDAPPWDTGKSVQDGHSVEPSLTPVPRANELESKEHGFY 763 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 E + TP + + +KL A + D W+ V Q+ + Sbjct: 764 ERGENAGERSFTRDALDFDTPLSTTYEGSLQAYLSDGSKLTH-ASQIDDWSNLVEQMPVA 822 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 L++Q+ L+A + N V L + SQ HL A+++L +A+ G VE++I + Sbjct: 823 GLLKQLVLHAAFSRNGNHVSLEIHHSQTHLLKDSAKKQLVDAIHHGLGENVEVSITLGEP 882 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TP +Q I+ + A A I D IQ L FD + ++++ Sbjct: 883 --SSTPFALQQEIHAMRHAHAHSVIKTDETIQALLSTFDGSVLTDTVKA 929 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 212/374 (56%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFA 376 + + Sbjct: 362 YDMMSLLARVEQIE 375 >UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma and tau n=1 Tax=Moritella sp. PE36 RepID=A6FBQ8_9GAMM Length = 814 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 259/550 (47%), Positives = 329/550 (59%), Gaps = 11/550 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F VVGQ+HVLTAL N L R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPHNFQQVVGQQHVLTALVNALEQDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+TPCG C C EI+QG +VDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEKGITSTPCGECSTCVEIDQGCYVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRCLQFHLK L Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCLQFHLKCLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL+ EH +E AL +A+AA+GS+RDALSLTDQA++ G G+V Q V M Sbjct: 181 EQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSLTDQALSHGAGEVLYQTVLDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L L+ +V + + MA I E ++ G +++ L VE+ LLHRIAM Q+ P+ Sbjct: 241 LGTLDHSHMLQLLRLIVSGDANKCMAKIAEVSSLGPDFDQLHVELASLLHRIAMAQILPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ L + P D+QLYYQ L GRKELP APD R +EMT+LR LAF Sbjct: 301 SVVD--TEHADKVKALCDDMSPEDVQLYYQITLTGRKELPLAPDPRSALEMTILRMLAFR 358 Query: 361 PRMPLPEPE-----VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P+ L PE P V T + P + Q+ Q +P Sbjct: 359 PQGRLQAPERDVTPAPVAIAPAVTETIIAAPVEQTVVSQAPVQATTPAVMPIAAPVPAQI 418 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 +QQ + + A A + A + +QA +E ++ Sbjct: 419 QQQAPQQVQQPVPESMPQPVAPAAEQRDEAVTNLNLEQNELLQAAQAMGHVEPKTVTPQS 478 Query: 476 YRWKATTPVMQQKEVVATP----KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 + P + + TP ++ P A +A ++++ + Sbjct: 479 VEQQTADPQSVEPQNYVTPQIESPSVAPQDYAAPQPINTAPVAENSVDQGRKTRNFLRSR 538 Query: 532 LPKLVEQVAL 541 L ++ A Sbjct: 539 LGTTAKKSAA 548 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 1/276 (0%) Query: 369 EVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKA 428 + A + + VPP+ P T + + + Q Q+ Q + Sbjct: 539 LGTTAKKSAAAKSEQAPSSYVPPKKAVTPVIQHTPAMQSRFNAPASQPMQQQQAQQQSAP 598 Query: 429 KKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQ- 487 E + N + D+ PA+ A Q Sbjct: 599 AWQELPPLDSYQDQGNFQGQGNYQDQDQGGYHNQMPEPSAYPAQGFAEPAIRQIDRFSQV 658 Query: 488 KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE 547 K + +A + K+ A E DPW ++Q+SL V Q+AL++ E+ Sbjct: 659 KVDINDLSPAFQAQKSGKSTATAPLDNKLRDENDPWCCYINQMSLGGRVRQLALHSVMEQ 718 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 + L + QR+ N ++Q+L++AL + VEL I +N TP + + IY Sbjct: 719 EPGRITLTMNPDQRYFANDKSRQQLSDALQQVLSEPVELVINFGENLNKSTPAQLEEIIY 778 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +++LA A +++ D IQ A +D+ SI P+ Sbjct: 779 QQRLANATKNLYDDKYIQFFMNRLGAVIDDSSIVPL 814 >UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Tax=Clostridiales RepID=C7GFD5_9FIRM Length = 526 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 145/435 (33%), Positives = 231/435 (53%), Gaps = 3/435 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++ AK Sbjct: 1 MSYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C CR I G +++IEIDAAS V++ R + + V+Y P G++ Sbjct: 61 AVNCEHPVDGSPCGECPACRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 E I +L ++ +E + E RA++ +A+AA+GS+RDALSL DQ IA ++ V Sbjct: 181 ETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLGQDLTYDKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG +D + L+ ++E N + +I+E G E + + L + +VQ S Sbjct: 241 TLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYLRNLMLVQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A+ + + Y + ++ YA +R+ +E+ +++ Sbjct: 301 DMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSELSNQIRYAVQKRILIEIAVIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 S ++ + + + A + Sbjct: 361 KPEMEKDYGSLIDRVDSLEKKLEKGIVVTQASGDMAAGTTGSSAASAVLKKKELPKAIPE 420 Query: 418 QLQRVQGATKAKKSE 432 ++++ + S+ Sbjct: 421 DIKQIMSSWSGILSQ 435 >UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 Tax=cellular organisms RepID=A3D5Q4_SHEB5 Length = 1147 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 266/664 (40%), Positives = 357/664 (53%), Gaps = 30/664 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGACGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I QL HIL +E + A++LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 GEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAFGGGNVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 AAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMP-------------LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 P P LPE + P + A V P P P Sbjct: 386 PEKPVKRWQPDAVAEIRLPEWQTPVAATAAAQAPHVNEPQFAETHTAEPHTAEPHSTEPH 445 Query: 408 TTSQVLAARQQLQRVQ-GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 V A ++ Q A + ++ A A V+ + + V D Sbjct: 446 IAETVPAEKKTALIEQTSANQQVETAQADAVDMAEVSIEPADTVEQVFDAELEADAALIA 505 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 E+A +A + V A + + + + P + IE + Sbjct: 506 EQAVILSQAQSQGFNADSLNADTVNAEVEPQTQTVSTAQAPSIHISEPVADIEASVASLD 565 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 +P+L+ A ++ + + S+ + + +T+E Sbjct: 566 AQNSEVPELIGATAESSIVNPAMAETLVGSTSADNNSAAENTLDN-----NPTTNNTLEQ 620 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ---------TLRRFFDAELDE 637 +++ +P A+ + A D ++ FD+ Sbjct: 621 NGLDEHSPYGTEAEHSYPAMGDYAQESAPLDSYQDAYVELSSGSYNDDDFHHSFDSHAVP 680 Query: 638 ESIR 641 + ++ Sbjct: 681 DDVQ 684 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 4/286 (1%) Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 +A H +P PV P P ++ + ++ + +A Sbjct: 839 IALHQSVPSAASASGSVPADPVKPATYDRPPWEAAPEVASTAELIETTQVDSGNTDIADA 898 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + S + A+ + Q+ S + + +A Sbjct: 899 GMAQGSDINDDSASS--GQGFLEASNIANDGQNNAADGNDSQSAEQGSDSKLQALQTQAR 956 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA--IERDPWAAQVSQLSLPK 534 A+E + E+A + W ++ L + Sbjct: 957 HQDKVQATALTPASKTALTQTASAVERTQEREVALSTLPISGHPLDLHWYKLMASLEVGG 1016 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 V Q+A+N+ + + + L L+ +Q+HL A +L +ALS G+ + +V + Sbjct: 1017 RVRQLAVNSVCQTQSDPLPLLLKPNQKHLAADVAIVQLEQALSAALGNPRRVQVVIGIDA 1076 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 TPLE R+ ++E L QA +S+I D+N+Q L + AELD +S+ Sbjct: 1077 QRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDADSL 1122 >UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridiales RepID=C4ZB56_EUBR3 Length = 523 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 147/421 (34%), Positives = 234/421 (55%), Gaps = 7/421 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT++A++ AK Sbjct: 1 MSYQALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C +CR I +G +++IEIDAAS V++ R + + V Y P GR+ Sbjct: 61 AVNCEHPVDGSPCGECPSCRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYRPTEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + I +L ++ +EH+ E RA++ +A+A +GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLGEKLTYENVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D + L+ +++ + + ++ E G E L+ + + + ++Q S Sbjct: 241 VLGAVDTEVFSRLLRRILDEDVTGAIRILGELIDEGRELSQLVNDFTWYMRNLLLLQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A + P + Y + ++ +A +R+ VE+ +++ Sbjct: 301 DMEEVLDISKDNLEALKEEAALVKPETLIRYIRVFSELSSQVKFASQKRIMVEIAIIKLC 360 Query: 358 AFHPRMP----LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L + P A Q +A + LP+ Q + Sbjct: 361 RPQMEKSYDSVLDRINSIEKKLEKGIPIAAQAAQTQDMQQAAASEPIVKKELPKAIPQDI 420 Query: 414 A 414 + Sbjct: 421 S 421 >UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=Desulfuromonadales RepID=Q3A7L0_PELCD Length = 582 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 165/442 (37%), Positives = 245/442 (55%), Gaps = 3/442 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ+F D+VGQEHV L N + GR+HHA+LF+G RGVGKTS AR+ AK Sbjct: 1 MSYLVLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++ PC VC +CREI G+ +D+ EID AS T V+D R+L +N++Y P+R R+ Sbjct: 61 ALNCEQGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPPEH KF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I+ R+L L+AR EGS+RDA S DQ IA V V + Sbjct: 181 PLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + +E+++ + R++ + G + E++ L + ++++ Sbjct: 241 LGMVDRRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCRELVETLRSLVVLKVVPE 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P AL + +R L+ T+ D++ L+ EL + R+ +EM LLR Sbjct: 301 PEALLDATPDELEELRRLSATVELEDLERAVTVLVRTEAELAGSSFPRLALEMALLRLAH 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P V + + + P + A ++ P + Sbjct: 361 L-PSGRDVATLVRQVEDLQRRLESGVPPAERAQPASYASSESIVAERPAPAPVQAQVPEP 419 Query: 419 LQRVQGATKAKKSEPAAATRAR 440 Q A K S+ A ++ + Sbjct: 420 AQSTAVAAAGKGSDAQAESKPQ 441 >UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Tax=Veillonellaceae RepID=C9KLC0_9FIRM Length = 631 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 241/473 (50%), Gaps = 3/473 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRPQTF D+VGQEH+ LAN ++ G I HAYLF+G RG GKTS A++LAK Sbjct: 1 MAYIALYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCG C+ CR+I G +D+ EIDAAS +++ RDL + V++AP GR+ Sbjct: 61 ALNCEHGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TI SRC ++ K + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L +I E + E AL ++A A+G +RDALS+ DQ A +G ++ + V + Sbjct: 181 EEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D + +A+ N + + ++ E G + + +L E+ L + + Q + Sbjct: 241 LGLVGHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLRSLMIFQAAGT 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A + +++ A+ P + L E+ ++P R+ VE+ L+ Sbjct: 301 VEAMDLYAEPQDVLQDQAKLFAPEVLPRMIARLHEAMTEMKWSPQPRITVEVALMELCRP 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ--VLAARQ 417 E S P A ++ + ++A Q + T A Sbjct: 361 ELVASTQENAGQAASNGPRAASSNPADEARIAKLEAALAQVTALLKQATAGAGVRPAVAP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A + A A A + Q KAP Sbjct: 421 ATGVPTPAPAPAAAPAVTPAPADVPEEPAALDEAGLQVWNQLFQSLREQHKAP 473 >UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau subunits n=2 Tax=Alteromonadales RepID=Q3IKN4_PSEHT Length = 842 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 247/529 (46%), Positives = 327/529 (61%), Gaps = 10/529 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++VGQ HV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+A PCG C +C++IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCDEGISANPCGQCSSCKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ QLEH+L E + + AL+++A+AA+GS+RDALSLTDQAIA +G ++ QAV M Sbjct: 181 SEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + SL+ A++ +G +M + A+R + ALL +++ L H + QL P Sbjct: 241 LGLMDTHYSQSLLAALLAQDGAALMKEVANVASRNPNYVALLDDLIALTHLTQLSQLVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + +A+ P IQ+YYQ LL G+K+L +AP+ R+G EM +LR LAF Sbjct: 301 AAALD-ETNADYITHVAQNTNPQQIQIYYQLLLNGKKDLQWAPEPRLGFEMIMLRLLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + QS PVA + + PLP T + Q+ Sbjct: 360 P--------IDTQSQQPVAVNTQPVQSNTTKASALRDILNKSKPLPSTAQNNDTTQPQII 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A AK SEP NN++ + S T + V + EA + Sbjct: 412 EPKPADVAKLSEPQNVAPDPLNNNSSTTQHVSTTVPAVEQAV-EPTIVSAVPNEAASEQL 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 T Q V +A +++ + + + + A D ++ V Q Sbjct: 471 VTQQHQHTNDVTDEQAQRQSEDEAYLQQSNLEHSLAAQFDDVISSAVDQ 519 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 104/296 (35%), Gaps = 6/296 (2%) Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 + R L + + + + P + + + + + Sbjct: 549 AIARILRDRN-ISGAGKLSNAKETEQQNTANLSSANTRPSRFTANSSNSNEQNVTTNSDA 607 Query: 412 VLAARQQLQRVQGATKAKKSEPA--AATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + +R Q P A + + Q P Sbjct: 608 INHSRANNNAQQTHADNPPPWPNDFAGESEKKPQLPLAGSQNKAASQAQFESKPERKIDF 667 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE--AIERDPWAAQV 527 AK + +++Q P+ + + + ++ A ++D WA + Sbjct: 668 KAKHQTITENLAPELLEQINPQKVPEVVVAQPSIPAPDDFQSPISEIRFAHQQDEWAYLI 727 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 ++ L + Q AL++ + N + + + SQ+HL+ +Q+L ALS + V L+ Sbjct: 728 KRMGLGGRMRQFALHSIFTKQGNNLHIDVDESQKHLDTPMLRQRLDAALSSIYEHNVTLS 787 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I + +P +Q I + QA + I +D+NI ++ F AE+DE SI+ + Sbjct: 788 INF-AKGVIDSPYLIQQKIDAGRHQQAIDVITSDDNIVQFQQLFSAEIDENSIQAL 842 >UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 Tax=Bacteria RepID=C9L9Q0_RUMHA Length = 538 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 145/430 (33%), Positives = 235/430 (54%), Gaps = 11/430 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++LA+ Sbjct: 1 MGYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PC C CR I +G +++IEIDAAS V++ R++ + V Y P G++ Sbjct: 61 AVNCEHPVDGSPCNTCKTCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 + I +L+ ++++E E +A++ +A+AA+GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGEKLTYEKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS- 298 LG +D ++ +++ + + ++E +G E + + + L + ++ S Sbjct: 241 NLGAVDTQVFSRMLRQILQQDTAGTIKTLDEIIIQGRELGQFVTDFIWYLRNLLLISTSE 300 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + A RM+E + + + Y + ++ YA +R+ VE+ L++ Sbjct: 301 HPEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELSNQIKYASQKRVLVEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M L + V QS P + E + + + Sbjct: 361 QPVMEMNLDSLYDRVRVLEEKLKNGVTV--------QSLPTENYVRTRAENPEEQILKEE 412 Query: 418 QLQRVQGATK 427 ++ + A + Sbjct: 413 TVKPEKAAPE 422 >UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URG8_AKKM8 Length = 732 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 186/730 (25%), Positives = 301/730 (41%), Gaps = 94/730 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV ARK+RP TF DV+GQ+HV+ L N + R+ HAYLF G RG GKTS AR+ AK Sbjct: 1 MSYQVFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRLAHAYLFVGPRGTGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G D C EI +GR +D++EID AS ++ RDL DNV++AP+RG F Sbjct: 61 ALNCSGGPKVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVRFAPSRGNF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ IDEVHML++ SFNALLKTLEEPP HVKF+ ATT+P K+ TILSRC +F L+ + Sbjct: 121 RIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRCQRFDLRPIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HI + E ++ A +A+ A+G +RDA S+ DQ ++ + Q V + Sbjct: 181 EIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLDQLVSFCGDHIEEQQVLHI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + ++ ++ L++E A G + L E++ + I + ++ P Sbjct: 241 FGITSRETVAHALALILNKELPSLLHLLHEQAEAGRDMSQFLSEIISAVREILVSKVDPE 300 Query: 301 ALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA- 358 A + + + + EL + I + L ++ ++ ++R+ +EM L++A+ Sbjct: 301 ASFDSLPESSKEELAELVKRTHTDKILRLVEVLAETEDKMRWSTNKRLHLEMGLIKAVHT 360 Query: 359 -----------------FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 P ++ Q ++ PT P Q +P A Sbjct: 361 LAEASISDIIMALEGAPLATAAPASSSDLASQQEPSTFISSATAPTPAPRQNIQSPVAAT 420 Query: 402 TV----------PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLA 451 P+P+ + A+ +Q++Q P + Sbjct: 421 NPTPATEEHLMDPIPDFSLSSPASSPAVQKIQSTDAQASPHPTQEAEPQQETLTPAAPPT 480 Query: 452 SVTDRVQARPVPS----------------ALEKAPAKKEAYRWKATTPVMQQKEV----- 490 S+ + P + + + + + P E Sbjct: 481 SLAVAEEEFPYSATKLRTKTVPASEEITRHPDSDASDVSKFPTDSPEPTFMDPEENLPLE 540 Query: 491 ------------VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE- 537 + + +A ++ P + ++ + I + W + Q+S ++ Sbjct: 541 RRTNSFFDNLFDTPSTSSQTQAPVEKEEPAVLSQQSGRTITEEDWKTVLEQMSAKFPLQA 600 Query: 538 QVALNAWKEESDN-AVCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVED- 591 N+ D AV + S L + L ALS G++V ++I +D Sbjct: 601 DFLANSVFSGYDGVAVAISFHPSDRQGMDSLGTGPLRTALEAALSQYIGTSVTISIRQDF 660 Query: 592 -----------------------DNPAVRTPLEWRQAIYEE--KLAQARESIIADNNIQT 626 P TP + +E K S D I Sbjct: 661 SIPEPVQEELAPLPAPPPSASTIPAPKPHTPQKKTAEPVQEASKEENEDNSYYTDPLIDA 720 Query: 627 LRRFFDAELD 636 F A + Sbjct: 721 AMEIFRARII 730 >UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1K9_SLAHD Length = 807 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 183/611 (29%), Positives = 282/611 (46%), Gaps = 12/611 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L RK+RPQTF DVVGQ HV L N L + HAYLF G RG GKT++ARLLAK Sbjct: 1 MA-EALYRKYRPQTFDDVVGQTHVERTLKNALQQDHVSHAYLFCGPRGTGKTTMARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR 119 L CE G T +P G C+ C+ I +G D+ E+DAASRT V++ R+ ++ VQ+AP RGR Sbjct: 60 ALLCEHGPTPSPDGTCEECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAPTRGR 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+P TILSRC +F L Sbjct: 120 YKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQRFDFHRLS 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+I +L + E + E AL L+AR A+G +RDAL+ +Q IA G G V+ +A Sbjct: 180 NEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAFGAGNVTMDVANA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG+LD + + + + + E G + ++ + + + L+ Sbjct: 240 ALGSLDVNDMSEIAGHIGRRDAAACFTWMAEYVETGADLAQFARDLASYVRDMYVFSLTD 299 Query: 300 AALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+G ++ + ++ E A+ + L L + + R+ E+ L R + Sbjct: 300 GAVGLSSASSSNQQQLAEDAKLYGTDRLAYILDVLGDLNTSLRSSTNPRLSFEIALTRMV 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAAR 416 + L + + +AP A Q + A+ Sbjct: 360 RPQSDLTLEALAARIEVLEKALASGQFAAPAGTTPAAAAPVPASVPASQSGYAGQAVPAK 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V ++A+++ A + Q RP+ + + +A Sbjct: 420 PARDEVPAPSRAQEAAARMRAARSQQAAPQPRPQAQPAPQAQPRPMAQPQAQPAPQAQAT 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 A P +Q + + +LAAKL A + W A V+++ + + Sbjct: 480 PQPAVQPQVQARPASQAQPRPQAPAAAAAPADLAAKLTNPAALQRGWQAAVAEVKRERSI 539 Query: 537 EQVAL---NAWKEESDNAVCLHLRSSQRHLNN----RGAQQKLAEALSMLKGSTVELTIV 589 L N E +A+ + S N + +A AL G V IV Sbjct: 540 YGALLMSANVVSEVDGSAMRIEFSSENTMAFNMVQKPDVTETIASALGHAFGMQVPFKIV 599 Query: 590 EDDNPAVRTPL 600 ++++ A P Sbjct: 600 QNESMAPVAPA 610 >UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 Tax=cellular organisms RepID=A9BMI7_DELAS Length = 731 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 247/732 (33%), Positives = 349/732 (47%), Gaps = 94/732 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F+++VGQEHV+ AL N L+ R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYLVLARKYRPRNFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNCET-----GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC+ GITATPCGVC C EI+ GRF D E+DAAS V++ + LL+ Y P Sbjct: 61 SLNCQGADGQGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 +GRFKV++IDEVHML+ +FNA+LKTLEEPPE++KF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + + E + L +L +E +A EP+AL+LL+RAA GS+RDALSLTDQAIA G GQ+ Sbjct: 181 RPMAPETVLEHLGQVLGQEGVASEPQALRLLSRAARGSMRDALSLTDQAIAFGSGQLQEA 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG++D L+EA+ +A+G+ V+ G+ + L EM +L R+A+ Sbjct: 241 TVRQMLGSVDRSHVFRLIEALAQADGQVVVETSEALRRNGLSAASTLEEMCAVLQRMAVA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q P + + LA +P + QL Y L GR EL APD + M LLR Sbjct: 301 QAVPQMAADASDPEAAEIARLAVLMPRDETQLLYSICLHGRAELGLAPDEYAALTMALLR 360 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA- 414 LAF P+ P P + + P+ + P Q A + Sbjct: 361 LLAFKPQSAEPAPGAAEKKTPALTPSTAKPESPAPVAQARPAQPAVPEAPAAPAKAAMPV 420 Query: 415 -------------------------------------------------ARQQLQRVQGA 425 L VQ A Sbjct: 421 PVAPPAPVAPVAPAASPVTAAPAVVAPVVQAVAAAAPVQAPVAVAAVARPEPVLAPVQEA 480 Query: 426 TKAKKSE----------PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + E P PV++ + +S + QA+ + E A A Sbjct: 481 RPSAAPEVQPAARVAQGPLDEPVDEPVDDVQEDEDSSADEAPQAQDADAPDEGAWAGMPD 540 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPEL-------------------AAKLAAE 516 W ++ P A A + E + A Sbjct: 541 EGWADEGRWSDDGDLALEPPAAAVARQAEPQIDTQIDVQDFAPERGRHSPGAPPAPTVER 600 Query: 517 AIERDPWAAQVSQL----SLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQK 571 E D W A V QL ++ L Q+AL + +A L + SS L +++ Sbjct: 601 TPEGDVWHAAVQQLVQAEAVTALARQLALQSQLVARDGDAWTLRVESS--SLAQPATRER 658 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L AL G +L + + V +P E+ A + ++ + +QTL R Sbjct: 659 LRAALEAA-GLARQLHVEQGAV--VDSPARRNAVASHERQRIAEDIVMNHSLVQTLIRSH 715 Query: 632 DAELDEESIRPI 643 A++ SI+P+ Sbjct: 716 GAKIVPGSIKPV 727 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 212/374 (56%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFA 376 + + Sbjct: 362 YDMMSLLARVEQIE 375 >UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A300_NATTJ Length = 589 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 162/638 (25%), Positives = 300/638 (47%), Gaps = 66/638 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ L R+WRP+ F D+VGQEHV+T L N +S RI HAYLFSG RG GKTS+A++ AK Sbjct: 1 MDYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG C C E ++G F+D++EIDAAS +++ R++ D+V Y+P+ G + Sbjct: 61 ALNCDHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPP++V F+LATT+P KLP+T+LSRC +F L Sbjct: 121 KVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVS 238 +I QL+++++ ++++ +L ++A+ ++G +RDALSL DQ+++ Q+ V Sbjct: 181 SKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + GT+ +D L+ A+ E + +++ ++ + + G ++ L +++ L + + +L Sbjct: 241 EVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKLK 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ +++L + ++ L ++ + ++ +RR+ VEM R + Sbjct: 301 GPSDQLLWGSV-DSVKKLHKYFTKDELISMIDFLSEKQQAMKWSQNRRLIVEMAFYRIIN 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + E + + QQ ++ E+ ++ A Q Sbjct: 360 KYNTSFEAEYKE---------KETKQKNNEETNDKSLKVQQTTSIESVESENKENAKLQD 410 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + T + ++ +++ ++ +++ + D++ + + K +W Sbjct: 411 QSSLPKQTDDQSNKNNDSSKLS-REDSDIQQSETKKDKMTEQQEATVQNDLNLKIVTEQW 469 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + LK+ K Sbjct: 470 DAVL------------EKLKQRKVTAHALVFEGKPVD----------------------- 494 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK----LAEALSMLKGSTVELTIVEDDNP 594 +N + L + + L+ +QK L E LS G +++ + + Sbjct: 495 --------VKENTLYLGFKKLHK-LHKERVEQKEKGLLEEVLSEFFG-DIKVKCIIVE-- 542 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 T L + ++ D+ ++ F Sbjct: 543 --ETDLSKQNTKQGNDHKGNSQNEEMDDLTGIAKQKFG 578 >UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 Tax=Roseiflexus RepID=A7NLI5_ROSCS Length = 644 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 196/649 (30%), Positives = 303/649 (46%), Gaps = 25/649 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L R++R QTF +++GQEHV+ L N ++ GR+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MTVQALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCGVC++CR I +GR VD+IE+DAAS T VED R++++ VQ+ PA R Sbjct: 61 AVNCTAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAVART 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+ K+P TILSRC +F V Sbjct: 121 KVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I +E + EP A + +ARAA GS+RDALS+ DQ +A G G VS + V + Sbjct: 181 ASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAYGGGTVSLEQVRNL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + +LV+A++ A+ + ++ + AA G + +++ L + ++ Sbjct: 241 LGASEMQEVTTLVDALIAADLPGALRVVADVAAAGADLRQFTRDLVERLRALMLICAGAD 300 Query: 301 ALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 D+A E ++ ART+ D+ + + +L + ++ +E+ ++ A+ Sbjct: 301 RSLLDVAEEEAAQIERQARTVSLGDLMRWVKLFSELDYQLRISSYGQLPLELAVIEAVIA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + P + QPQ AP Q T P + T + Sbjct: 361 SAPAATAAQSTVPATPPRPSARPTTAPARDAAQPQRAPAQPTTAPAHDRTPPQPPPARAA 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + P A R + A A +AP +A + Sbjct: 421 PAHNAEPPQRDLAPPATVPVRDDMPPVPTIRRAGATGTAAASPVDAAREAPG--DAPQAS 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPEL-------AAKLAAEAIERDPWAAQVSQLSL 532 A P + + ++A + E A A W+A V + + Sbjct: 479 ARQPDSTGDPFIRHQEQTRRASNPGISTESGEGVAAANADAVALERIEGIWSAVVRDVRV 538 Query: 533 PKLVEQVALNA---WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELT 587 Q LN+ + DN + L + S + +Q + E LS G+ + Sbjct: 539 HNKTLQALLNSGARPVDVKDNILVLEVPSEWLMNQIEKPAMRQIVEEVLSKHMGARFAIR 598 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + P R+ I + D ++ FDA++ Sbjct: 599 CAV-ETQRRENPGALREQIRASR---------KDPLVRAALNIFDADII 637 >UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderiales RepID=Q13Z80_BURXL Length = 957 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 216/504 (42%), Positives = 291/504 (57%), Gaps = 3/504 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+TPCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LEHIL EE + ++ +AL+LLARAA+GS+RDALSLTDQAIA QV+ +AV M Sbjct: 181 GHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSLTDQAIAYSANQVNEEAVRGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ + +G V+++ +E A R + + L ++ LLHRIA Q +P+ Sbjct: 241 LGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + +QL+YQ IGR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAGD-LRRFAEALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V + T P V + A Sbjct: 360 PAPTGGGGAVGAARAPGQSGAGGARRTGAPAVAAQQGASGSPVSQARAVAASGAVPGTSF 419 Query: 421 RVQ--GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 Q A ++++P A + T V + A +A Sbjct: 420 EAQVSAAAPGRETQPGNVVVADKGAVVGAVSVEPATRAVAQAGSTVEVPPAVGDVQAAAA 479 Query: 479 KATTPVMQQKEVVATPKALKKALE 502 + + + A P + Sbjct: 480 DSAQGAVAGQSPAAEPATVAGPAP 503 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 5/141 (3%) Query: 504 EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRH 562 ++ P A + W A L L + Q+A N+ N + L++ Q Sbjct: 808 DQRPLPPAVPLDPLGFKGDWPALAVDLPLKGISYQLAFNSELMALEGNTLKLNVPVPQ-- 865 Query: 563 LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 KL AL+ G TVE+ + PA RT A+ ++ +A I AD Sbjct: 866 YAEASQVAKLKTALADRLGHTVEVLVEVG--PARRTAAAHDAAMRAQRQQEAEREIGADP 923 Query: 623 NIQTLRRFFDAELDEESIRPI 643 +Q+L R F A + SIRPI Sbjct: 924 FVQSLIREFGASIVPGSIRPI 944 >UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Bacilli RepID=Q1WSU3_LACS1 Length = 579 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 156/591 (26%), Positives = 282/591 (47%), Gaps = 25/591 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQE V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I +GR D+IEIDAAS VE+ RD+ D V+YAP + Sbjct: 61 AINCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TI+SR +F K + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I ++ +IL+++++ ++ +AL+++A+AAEG +RDALSL DQ I+ GD V+ + Sbjct: 181 ESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + ++ ++ + + I + +G + L+ +++ + + Q +P Sbjct: 241 TGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPE 300 Query: 301 ALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + ++ ++ + +EL++ I T + L ++ + ++ + + +E+ ++ Sbjct: 301 MVSDGELGLLDDKFKELSQQINVTQLYQIIDELNKQQENMRFSSHQSIYLEVLTVKL--- 357 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + ++ + + + S ++ Sbjct: 358 -------------TQLSTNSEADRVSNVDLSQIELLKQKIENLQRKVDNLSSNTVQTEKN 404 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + ++ + ++ A+ + + V L + + Sbjct: 405 NEPRKQVRKNTTKGQKNVKINLSQVYSVLNNATRQSLNELKQVWPDLMNMLSVTQRAIMH 464 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE-- 537 + PV + V + A +K E + D +V L L + Sbjct: 465 VSEPVAASENGVVV--GFEYAFLCQKALEDQELIDTLENGLDRLIGKVPSLVLIPVENWP 522 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGA----QQKLAEALSMLKGSTV 584 ++ N K+ + AV + +S++ +N Q + + L G+ + Sbjct: 523 EIRSNYLKQRKNGAVVIADDTSEQSQDNDDQSASTQPTIIQKAEELFGTDI 573 >UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clostridium RepID=C9XIC8_CLODC Length = 545 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 226/377 (59%), Gaps = 2/377 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L R +RPQ F DV+GQ+H++ L N + I HAYLF GTRG GKTS A++ ++ + Sbjct: 2 HKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC I PC C+ C + + +D++EIDAAS V+D R+L ++V+Y+PA ++KV Sbjct: 62 NCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATT+P K+P TILSRC ++ K + V+ Sbjct: 122 YIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +++ I +E I + +AL L+AR ++G+LRDALS+ DQ ++ G+ ++ + V ++G Sbjct: 182 MTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 +++ +Q L + +VE + ++ + ++NE G + L+ +++ + + ++S Sbjct: 242 SVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELD 301 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +++ ++ I D+ L I + ++ + + R+ VE+T+++ Sbjct: 302 EIISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIAQPM 361 Query: 361 PRMPLPEPEVPRQSFAP 377 ++ Sbjct: 362 FDESKEALIKRVENLEK 378 >UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propionibacterium acnes RepID=Q6ABA1_PROAC Length = 957 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 171/649 (26%), Positives = 278/649 (42%), Gaps = 37/649 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +V+G++HV+ L + R++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 108 LALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALN 167 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +CR++ G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 168 CEQGPTPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVHSRYK 227 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + + + Sbjct: 228 IYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPK 287 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + L + +E I + L L+ RA GS+RD+LS+ DQ + + DG VS + +A+ Sbjct: 288 VLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGHVSYEQAAAL 347 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +V+A + +V A I++ G + ++L + + +V P Sbjct: 348 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLVIVSAVPD 407 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L + R+ ++ + L G + R+ +E+ R Sbjct: 408 ACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAPRLHLELMCSRI 467 Query: 357 L----------------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 L R+ + P + T PQ S PQ Sbjct: 468 LLPGADTDGRGIHARLERLERRIGVSGPVEEVERAERPVTAQPPTRYADTPQQASPPQHW 527 Query: 401 PTVPL--PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 P L PE S + + + + S RP N A + ++ Sbjct: 528 PAENLQNPERRSAPEHHDAPSPGQRPSGRPRPSRK----DYRPGNQLAEQPPSNQHGDDG 583 Query: 459 ARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 + P+ + + + Q++ TP A + E+ + + Sbjct: 584 QMSQGPRQQGGPSTSQRQQPRPQDHQPSQRDRQDTPPAQPQQPSAEQGGRADDAINITTL 643 Query: 519 ERDPWAAQVSQLSLPKLVEQVALN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLA 573 R+ W + + V + LN E N L + ++ + + L Sbjct: 644 RRE-WPQVLEAVKDGGRVAWMVLNQYAQVLEVHGNQATLGFSNIGARENFAAGNYPKVLH 702 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 +A+ + G + T V + PA P A+E D Sbjct: 703 DAVVKVLGVDLAFTAVVGEPPAAVRPESHPAEFQSGP--AAQEPPDDDP 749 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 169/551 (30%), Positives = 259/551 (47%), Gaps = 12/551 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R +RPQTF DVVGQEHV T L N L R+ HAYLF+G RG GKTS A+++AK Sbjct: 1 MAYTALYRVYRPQTFQDVVGQEHVTTTLRNALRENRLSHAYLFNGPRGTGKTSAAKIMAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC CD CR I G D++EIDAAS VE+ RD+ D V++AP+ R+ Sbjct: 61 AVNCEQPIDGEPCNQCDTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRCQRFDFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I + + E +ALQL+A+ AEG RDALSL DQAI+ +V + + Sbjct: 181 RVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSKDEVRASDIMQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + E + +VM ++ +G + E L + L + +++ +P Sbjct: 241 TGTVAQSYFSVLARHIAENDIAQVMEQFDKVMVQGKDPEQFLHDFLYYYRDMLLLKTAPQ 300 Query: 301 ALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I+ + E+A+ + +T +L ++ R+ VE+TL++ Sbjct: 301 LEEIVERTMIDDQFAEVAKLYSFPVLYAAIETCNQALSQLKWSTYARVLVELTLVKMC-- 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P E + + + Q + P + + + + Sbjct: 359 QPNANATESMGASPVNSEELTAMSNRIRVLEERLVQVMQGQVSTPGQQKAEETRKSEPRR 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A++ + R Q + + L+K + +A+ Sbjct: 419 IAAASGGSRTP------MNRVREVAKAMDENLTRQVRGQWSQILTELKKIKIQYQAWLVN 472 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 PV E V A+ +KT E + E + + LS+ + Q Sbjct: 473 G-QPVAAGNEAVVV--TFNSAIHCDKTMEAELRSVIERVMSTVLGRPLQLLSVMEEEWQS 529 Query: 540 ALNAWKEESDN 550 ++ + Sbjct: 530 VDQQVGQKDAS 540 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 166/588 (28%), Positives = 260/588 (44%), Gaps = 5/588 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L R WRPQTF D+VGQ H++ L N + R+ HAYLF+G RG GKT+ A++LAK Sbjct: 1 MSHIALYRAWRPQTFQDMVGQRHIIQTLQNAIREDRVSHAYLFNGPRGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G PC CD CR I G +D+IEIDAAS +++ RD+ D V+YAP+ R+ Sbjct: 61 AVNCERGPAEEPCNECDACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + + Sbjct: 121 KVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQRFDFRQVSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+ +L I +E I E A+ +AR +EG +RDA+SL +Q A G +++ + Sbjct: 181 EEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGSRITLDGAVDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + DQ +L EA+ + N +M L+ G + + ++ + +++L+P Sbjct: 241 TGGMAADQFYALAEAIRDRNVAAIMPLVEGLTQAGKSADKCMENLIFYFRDLLVLKLAPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + R R +A + TL + ++ +A + E+ L++ Sbjct: 301 GAVTERVVDAERFRGMADAFSSERLFKMIDTLNTYQSDMKHASQPQTLFEVALMKICTIG 360 Query: 361 PR-MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + +P A +A + + + + S Sbjct: 361 NESAGGTGSGGGAATSSPPAASAEVQRLRQQVEILERKLEQLIQNGGAAGSGAGDGGAVR 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + + AA V A Q R + + + Sbjct: 421 QPASQSRRPGFGGGGAAVSRSTVKLDPFVAAAGSPGTGQVRMKWNEVLHRVKEARITVHA 480 Query: 480 ATTP-VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A K + E T A + E + +D + + Q Sbjct: 481 WLVDGEPVAATDSTILVAFKNTMHRETTERPAHREIIERVMQDVFGNPFKLATCMLKEWQ 540 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 A + E+ + L Q + EA+ L G + + Sbjct: 541 NAASRSGEQEGETLELQ--PDAIDTGEEQRPQWVEEAVK-LFGEDLVV 585 >UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 Tax=Sphingobacteriales RepID=C6W6R9_DYAFD Length = 621 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 160/647 (24%), Positives = 259/647 (40%), Gaps = 38/647 (5%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + V ARK+RP TF VVGQ H+ T L N + + A+LF G RGVGKT+ AR+LA Sbjct: 1 MDHFVVSARKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQAFLFCGPRGVGKTTCARILA 60 Query: 60 KGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC+ G CG C++C + ++ E+DAAS VED R+L+D V+Y P G Sbjct: 61 KTINCQNLGDDVEACGECESCVSFQNNASFNIHELDAASNNSVEDIRNLIDQVRYPPQTG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++K+Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + Sbjct: 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVSTQAV 237 + I H L I +E I E AL+L+ + A+G LRDALS+ D S + ++ AV Sbjct: 181 QSKDIAHHLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFSTNNHLTYAAV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 L LD D + +A+ + R + L +E +G + +V +L + + + Sbjct: 241 LENLHILDYDYYFKITDALTAGSIARSLVLFDEILRKGFDGHLFVVGLLEHFRNLLVCKD 300 Query: 298 SPA-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L + E + E + + + A ++R+ VE+ L++ Sbjct: 301 PATVTLLQVSESAERKYLEQSLMADMSFLLSALSITGQCDINYKSAKNQRLHVELCLMKL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + L ++ P APQ + V + A Sbjct: 361 ANLPQVLQLHSLAAVDETAKKKVEPQQSLNNG----PAPAPQPSAVVNGQPSNGSAYAQA 416 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + P A + + + + +P S L+ + + Sbjct: 417 PAPQ----PAMPQHPSPQQAMHQQTAPQQVMPQQTAPQQVTPQQPASSRLKNTISLTPSL 472 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK-- 534 P A + + + W + Sbjct: 473 TPPTQQ-------AAKEPAAQPRVEYAAVPNGTKKEELTLPNLQRLWYEFSQKRQQAGNS 525 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 EQ+ LN + + + + L + + + L L + +L I P Sbjct: 526 TTEQITLNREFQLNGTTIEIALDNDHQQDAVMNMRYDLLGFLKSRLDAP-KLDINPRVAP 584 Query: 595 A-----VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 TP E + + + L++ ++D Sbjct: 585 QEVNRLPYTPAEKFNYMA-----------EKNPYLLELKQALGLDVD 620 >UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1W4_ABIDE Length = 522 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 224/388 (57%), Gaps = 3/388 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP+ F +V GQ+ V+T L N + +I HAY+FSGTRG GKTS+A++ AK Sbjct: 1 MSYTALYRKFRPKGFDEVKGQDSVVTVLKNQIKHEKIGHAYMFSGTRGTGKTSVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE +PCGVC+ C++I +GR +D+IEIDAA+ V++ R++++ V+Y+P ++ Sbjct: 61 AVNCENTKDGSPCGVCETCKKIGEGRTLDVIEIDAATNNGVDNMREVIEEVKYSPTDTKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPE+ F+LATT+P K+ TI SRC ++ + + + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQKYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 E I +L+ ++++E +E AL+ +AR +GS+RDALSL DQ +A D +++ V Sbjct: 181 ETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFSFDEKLTYDKVLN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG++D D L A+ + M + E + GI+ ++ + ++++S Sbjct: 241 VLGSVDTDLFNKLYIAIKRGDVTTCMDIAEEISMNGIDIGQFTLDFTWYFRNLLLLRVSK 300 Query: 300 AALG--NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 AA ++E+A+ D+ Y + ++ Y+ +R +E+ L++ Sbjct: 301 AAADRIEISTDKLAELKEVAKIGEENDLYRYIRIFSKLSADIKYSTSKRAELEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 + + T Sbjct: 361 RPEMEEDRESLIARINKLEEIIESGEFT 388 >UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subunits n=3 Tax=Bacillus RepID=A8FAE4_BACP2 Length = 570 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 150/477 (31%), Positives = 240/477 (50%), Gaps = 8/477 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC CD C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I++ E + + +L+++A AA+G +RDALSL DQAI+ Q++ + Sbjct: 181 KDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L EA+ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ L+ + P + + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDENFVTLSDRVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQA 360 Query: 360 HPRMPLPEPEVPRQSFAP-----VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV-- 412 +P + + + VP PQ+ P P+T+++ Sbjct: 361 TAGIPQAHANADLTTLTDKIDRLEQELSRIKAEGVPMSHSQHPQEKKEAPRPQTSNKNGY 420 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A ++ + K + E + + + S + +A A Sbjct: 421 RAPVGRIHEILKEAKRPELEKIKGKWGELLAHLKQQNKVSHAALLTDSEPVAAATHA 477 >UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunits n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017455DA Length = 676 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 177/668 (26%), Positives = 282/668 (42%), Gaps = 40/668 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV ARK+RP+TF DV+GQ+HV+ L N ++ R+ HAYLF G RG GKTS AR+ AK Sbjct: 16 SYQVFARKYRPRTFEDVLGQDHVVRTLRNAIAQNRLAHAYLFVGPRGTGKTSTARIFAKA 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G + C EIE+G +D+ EID AS VE R+L + V++AP R R+K Sbjct: 76 LNCPNGPRVDFDPDDEVCVEIEKGISLDVREIDGASNNGVEQVRELREEVKFAPTRCRYK 135 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y IDEVHMLS +FNALLKTLEEPPEHVKF+ ATT+ K+ TI+SRC +F L+ + Sbjct: 136 IYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISRCQRFDLRRIPAG 195 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I L HI E +A +A +A+ AEG +RDA S+ DQ +A ++ Q V + Sbjct: 196 LIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSMLDQLVAFCGERIEEQDVLDIF 255 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + +L +++ + + ++ A G + LL +++ + + Q+ PAA Sbjct: 256 GFTRGETVANLAARVLDRDTVGALKELHSQADTGKDLGRLLTDLIQHFRTLLVHQVDPAA 315 Query: 302 LGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D+ + +R+ + + + L + +A ++ + +E+ +++A+ Sbjct: 316 AEEDLSPEVADMVRQQSAMVQAESLLRVMDGLAEVDARMRWASNKLLHLEIGVIQAVQTL 375 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + L E ++ ++ PP P A +AP P +AA Sbjct: 376 GEVTLSEVI---EALGGAPSPDLIARRAAPPVPSRAVVEAPAAERPRPAPVAVAAPTPAP 432 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K A P+ E PA Sbjct: 433 V---SLSTPKPAAAPVVEPAPLPALFREEPPPQAPVPPLFRDEPPQTDRPAPVAVAPTPP 489 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ-- 538 V + P A A + AA + W + + ++ Sbjct: 490 PVAVPAEVPPAVEPAAPTPAPAPVAEAPTSPPAAAGGTPEEQWRQIKDRFRIKSPLKADY 549 Query: 539 VALNAWKEESDNAVCLHLRSSQR----HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + A++ + + + +S+ L ++ L E +S + G + L I +P Sbjct: 550 LDVAAFQSCEGKTLRIGMPTSEAGHRDALLYAPVRKALEEIMSDVIGRPMMLEINL--DP 607 Query: 595 AVRTPLEWRQAIY-------------------------EEKLAQARESIIADNNIQTLRR 629 ++ P E E D IQ Sbjct: 608 SMEPPPMAEPMFTFSDPEPAPAKAPAAPKPEPKAEAKSEAAKPAINEDFYNDPLIQEALV 667 Query: 630 FFDAELDE 637 F A L + Sbjct: 668 KFKATLVK 675 >UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Bacillales RepID=DPO3X_BACSU Length = 563 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 148/432 (34%), Positives = 232/432 (53%), Gaps = 4/432 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I ++ I++ E + E +L+++A AA+G +RDALSL DQAI+ + + + Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L +++ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA- 358 + ++ REL+ IP + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQT 360 Query: 359 -FHPRMPLPEPEVPRQSFAP-VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 LPE ++ + + T + +S ++AP VP ++ Sbjct: 361 SHQSAADLPEVDMLMKKIQQLEQEVERLKTTGIKAAAESPKKEAPRVPKGGKSNYKAPVG 420 Query: 417 QQLQRVQGATKA 428 + + ++ AT+ Sbjct: 421 RIHEILKEATRP 432 >UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPF5_9PLAN Length = 618 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 185/649 (28%), Positives = 295/649 (45%), Gaps = 63/649 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ+F ++VGQ V AL N + GR+ HAYLF+G RGVGKTS AR+LAK L Sbjct: 18 YVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKAL 77 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ G +ATPC CD CR + G VD++EID AS +E+ R L NV P+R RFK+ Sbjct: 78 NCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIRPSRARFKI 137 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHM ++ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F + +++ Sbjct: 138 YIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDE 197 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I+ E + EP AL+LLAR A GS+RD+ SL +Q +A G +++ V+ MLG Sbjct: 198 IVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVNQMLG 257 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--LSPA 300 +Q ++ A+ + V+A ++A RGI+ L+ ++LG + + P Sbjct: 258 AAGSEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMMTLAVGAGPT 317 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + ++ +A++ ++ Q L + + R+ EM L+R Sbjct: 318 LLQTVLPTDAEKIEAVAKSYGLANVMAAVQILDDALVRMQRSAHARILAEMALVRVCQLE 377 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + +S P+ + P + P +T Q A ++ + Sbjct: 378 DLQSVADLVETIRSGKPLPARPAIQIAAAPQPSAAPQLPPQAAPQAMSTVQTDVAAERTE 437 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ S P V + E + E R Sbjct: 438 SRVNSSDPASSGPVRQASPSEVTSYVEEPDPEL-----------------GLSEPPRTNG 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 ++ ++ W ++ +S LV + A Sbjct: 481 I-------------------------------KLTDSTAKNIWEGILTDMSD--LVGEYA 507 Query: 541 L--NAWKEESDNAVCLHLRSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVE-DDN 593 N + + ++ L A+ +L L+ G+ V L +D Sbjct: 508 RPYKTVATSGPNRLVVSFSAAYNSQVEFLRRPAAKTRLEGMLTEAVGNPVTLEFKVLNDV 567 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 PA +T + Q + + +Q F AE+ S+R Sbjct: 568 PAAKT--QEPPKRSAPSSGQMIRKVQQNQLVQQAIEMFGAEV--TSVRA 612 >UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAH1_DESAH Length = 590 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 178/653 (27%), Positives = 273/653 (41%), Gaps = 88/653 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+VLA K+RPQTF +VVGQ HV T L N + GR+ HA L +G RG GKT+IAR+LAK Sbjct: 1 MSYRVLALKYRPQTFDEVVGQPHVTTTLKNAILSGRVPHAILLTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCETG T TPC +C C I G VD+ EID AS V+ R+L +NV Y P+ +F Sbjct: 61 AMNCETGPTPTPCNICKTCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYMPSSSKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP+HV F+ ATT+ K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQRHDLGRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---------ASGDGQ 231 QI L + E + + LLA A+GS+RD+LSL D+ + SG Sbjct: 181 AQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRILGSQAQTSEQTSGPRA 240 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + LG +D L +A+++ G ++ L++ G++ + ++ Sbjct: 241 IDDDKILGTLGIIDKTLVFDLADAIIQNRGADIIDLVDRIHTLGLDLKRFYASLIRHFRN 300 Query: 292 IAMVQLSPAALG--NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +A+V++S + RM L + + + TLL+ + + R V Sbjct: 301 LAVVKVSSNDKNTCDISDHDRQRMAALTAPLSQSFLNQILNTLLVDESLVKLSSHTRTAV 360 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 EM LL+ + P + + A P ++ P P PE Sbjct: 361 EMVLLKLVQIRPGIEIDLMIKRLDDLARRFDN--------PDFQALPQEERPVCPPPEPR 412 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + +P +P + V + P P A Sbjct: 413 KAPTSMDPHPISDDNGESVPAPQPGTTPSYKPTD----------RINVVSPPTPEPRTIA 462 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 P + A RW + A+ K L+ ++ +L A +R Sbjct: 463 PPEDPAGRWNPFLKALADSLPFASAILSKGRLQKISNTDIVVELNGTAFDRGRI------ 516 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + ++ G + LT++ Sbjct: 517 ------------------------------------ESKRGEIETVCHDYFGKPLHLTLI 540 Query: 590 EDDNP-----AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 D P ++P + RQ I+ + + F+ + + Sbjct: 541 GDCAPKEYGNDEKSPAKLRQE------------ILNHPLVADAIKRFNGTVVD 581 >UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VYC4_MARMS Length = 752 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 236/523 (45%), Positives = 318/523 (60%), Gaps = 6/523 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG CD+CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGR Sbjct: 61 CLNCETNGISPEPCGTCDSCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ L+ +L E + + AL + +AA GS+RDALSLTDQAIA G+G +S V+A Sbjct: 181 PQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIAFGNGTISESGVTA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q L L+E++ N +V+ I + A ++ A+ +L +LHR+A+ Q P Sbjct: 241 MLGLVNQAQVLDLLESVASKNAAQVLTRIEQLADYQPDFTAICGSLLDVLHRVAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + R++ +A ++ +IQ+ YQ+LLIGR++L A R G EM +LR +AF Sbjct: 301 GALMDQLGD-LARIQAIAASVSSEEIQIMYQSLLIGRRDLHLAHSARAGFEMLMLRLIAF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+ V AV + Q+A + P P+ E + V+ +++ Sbjct: 360 RPAPPMV-VSHNAPPVMNVQTEAVPITSPDESMHQTAESEYPLQPMTEKKTPVV-KQEEP 417 Query: 420 QRVQGATKAKKSEPAA--ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ A + + EP A P + E + A+E A+ E + Sbjct: 418 VVIKPAEQMVEPEPVQESAQPTAPAEHPPWEYAPEPAAAEEYVVEQVAVESESAQSEVIQ 477 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 V + + + + L E+ + Sbjct: 478 HDIEEDVEITAVENSELEESLDVEQQTVSIALEPTARQESDIQ 520 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 96/329 (29%), Gaps = 47/329 (14%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P + EPE ++S P AP P + V + ++Q + + Sbjct: 421 KPAEQMVEPEPVQESAQPTAPAEHPPWEYAPEPAAAEEYVVEQVAVESESAQSEVIQHDI 480 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP--------- 470 + T + SE + + + + + E P Sbjct: 481 EEDVEITAVENSELEESLDVEQQTVSIALEPTARQESDIQVETANKPEHEPKSFVVADDR 540 Query: 471 -------------------AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAA 511 + A P + + +E P+ Sbjct: 541 FTEELLDESDEDEDEQEAEERAIADIVDPFNPAADLVDALGAEPIESSVVEESTEPDTRL 600 Query: 512 KLAAEAIER------------------DPWAAQVSQLSLPKLVEQVALNA-WKEESDNAV 552 + I + W +L L LV+ + +N+ + SD V Sbjct: 601 SKVPDTIAQPALGMPLPEMSHFNELTMKLWWLVAPRLPLTGLVQNILMNSSLVDASDQGV 660 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 L + H+ N+ +++ ALS TV L I ++ T E+ + E L Sbjct: 661 RLEVPLEYGHMLNQVRYEQIQGALSDFFAMTVPLIIDTVEDTTGVTAEEFAASKRAEALQ 720 Query: 613 QARESIIADNNIQTLRRFFDAELDEESIR 641 A + + +Q L A+L ++++ Sbjct: 721 VAITHLNSHPVVQALSATMGAQLVYDTVK 749 >UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 Tax=Chlorobiaceae RepID=B4S8V3_PROA2 Length = 617 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 176/656 (26%), Positives = 286/656 (43%), Gaps = 60/656 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV+ARK+RP FAD+ QEH+ + N L L R+ H Y+FSG RGVGKT+ AR+ AK Sbjct: 1 MSYQVIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAK 60 Query: 61 GLNCETGITA--------TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 +NC+ I PCG C++C + + G +++ E DAAS V+D R L +NV+ Sbjct: 61 AVNCQKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNNSVDDIRQLRENVR 120 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P +GR++VY+IDEVHMLS +FNA LKTLEEPP H F+ ATT+ K+P TI SRC + Sbjct: 121 YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQR 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 F+ K + + +I+ QL+ I E + AL L+AR A+GS+RDA S+ DQ IA G Sbjct: 181 FNFKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGND 240 Query: 232 ----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 ++ Q V+ +L +DDDQ + +A+ E + +++ + G + + L +++ Sbjct: 241 AEKVIAYQGVAELLNYIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKLIE 300 Query: 288 LLHR-IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 + + L L +++ R ++ A + + L+ EL + + + Sbjct: 301 HFRNFLVLYNLRSTRLIERTESVKERYQQSAGGLSAPLVMQLIDLLMKESGELKFQFEYQ 360 Query: 347 MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 E+TLLR + V V P P P Sbjct: 361 FRFELTLLRLIEL-----------------------VHNDGGVAASVAGGPPVKKKAPEP 397 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 + + GA A+ PA+ +P + R AS+ Q + Sbjct: 398 DLKQPDRHPGPAGRSAPGARPAELPSPASTPEQQPPS----ARSASLPPSPQQSAPRNVA 453 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 P + W+ + P + + + + R W Sbjct: 454 SGKPGVDFS-AWQGKLMNFTRNGSRKQPVQASSSDARQSG--VFEGVVEVEKFRMEWNQF 510 Query: 527 VSQLSLPKLVEQVALN----AWKEESDNAVCLHL--RSSQRHLNNRGAQQKLAEALSMLK 580 + + L K + + + S + + + S L A L++ + Sbjct: 511 LE-MLLKKRQKVLVTHLRSCELTSCSHGVLVMTCGKKFSYEELMQDAAL--LSKEIESFY 567 Query: 581 GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 G V+L I D +T + R+ ++ ++ + + F EL Sbjct: 568 GIAVKLQICYDAARDAQT-------REQTIFTLFRDLAETNDVMKYIIKEFGGELV 616 >UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8CMY6_SHEPW Length = 946 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 250/526 (47%), Positives = 324/526 (61%), Gaps = 9/526 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGR+ Sbjct: 61 GLNCEQGVTATPCGQCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L E + E AL LLA+AA GS+RDALSLTDQAIA G GQV + V M Sbjct: 181 DEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSLTDQAIAFGAGQVKLELVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q ++L+EA+ +A+ +M + + G E E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKQVIALLEALAKADVMALMQVSAGVLSFGAEPEEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A M+ +++ A+ + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+ F Sbjct: 301 AAQ--MSLYSEQIKAFAQQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVTFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + + + A TQ + A + +V AA + Sbjct: 359 PEQPVSKWVTDSPAAIAIPQAAAPAITQS-------SESAKPQAIVAPQQEVKAAPVEEA 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + S PV L+ + + PV S LE ++ +A Sbjct: 412 AEKKTVLTANSVNDKQPNQDPVAADTLKPELAAIEASVGAPVSSTLESMNSEMAVILSQA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + T + + E P + A+ A+ D Sbjct: 472 QSQGFSSSDTSETKDISTEQTQSEVKPPVKAQQPADTSTSDDATEI 517 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 100/282 (35%), Gaps = 3/282 (1%) Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAARQQLQ 420 L + P V + AP PE S + Sbjct: 637 DAVLAARDSLLDGIGEEDPQESSAKKSVAERKPFAPPVRKPKAEPEIDNSDPATVGAKSD 696 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVT--DRVQARPVPSALEKAPAKKEAYRW 478 + Q KA ++ T RP + + D + A + A + + Sbjct: 697 QAQENIKAANADNQEETFDRPPWEEPHAQDPTPRFDDVAVEKEANKAADNAAVEPKRTPQ 756 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 Q K V + + P L + W ++ L + V Q Sbjct: 757 PQNQTEQQSKPPVTSLDSTSVQDVELNLPALPSGEITGNDIDLKWYRFMADLEVGGRVRQ 816 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 +A+N+ + + + L L+ Q+HL A ++L EA+S G E+ I + + T Sbjct: 817 LAVNSVCHQFEQPLSLLLKPDQKHLGADVAIKQLEEAMSKALGEPSEVRISVGVDSSRET 876 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 PLE R+ ++E LAQA +I D+N++ L A+L +S+ Sbjct: 877 PLEVRRRFHKEILAQAHHGMITDDNVRWLSENMGAQLTPDSL 918 >UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W2_EUBE2 Length = 561 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 8/380 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RKWRP F DV GQ+ ++T L N ++ RI HAYLF GTRG GKTS+A++ AK Sbjct: 17 MSYQALYRKWRPDNFNDVKGQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAK 76 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PCG C C+ I G +++IEIDAAS V++ R + + VQY+P GRF Sbjct: 77 AVNCEHPVDGNPCGECPTCKAIAAGTSMNVIEIDAASNNGVDNIRQIREEVQYSPTEGRF 136 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 137 KVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRYDFHRITI 196 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 E I +L ++ E + E +A++ +A+AA+GS+RDALSL DQ +A + + V Sbjct: 197 ETIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYLGKDLKYENVLD 256 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D ++ ++ + M+L+ + +G + + + + L + +++ + Sbjct: 257 VLGAVDTAVFSKMLSTILSGDVAVCMSLMEDLIMQGRDLSQFVTDFIWYLRNLLLIKTTK 316 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A + A +++ A+ + + Y + L +L ++ +R+ E+T + Sbjct: 317 DAERIEDVIEVSADNLEDLKKDAQNVDIDTLMYYIRVLSELSNDLKFSTQKRVKTEITFI 376 Query: 355 RALAFHPRMPLPEPEVPRQS 374 + + P M + S Sbjct: 377 KLM--RPAMDNSQDIGDVVS 394 >UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU40_DESOH Length = 570 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 80/643 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q+ V L N ++ GR+ HA LF+G RG GKT+IAR+LAK Sbjct: 1 MSYLVLARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHAILFTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T TPC C +C EI G D+ EID AS V+ R+L NV++ PA + Sbjct: 61 AMNCEKGPTPTPCCACRSCLEIASGNATDVFEIDGASNNSVDQVRELRGNVKFMPAHSPY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP HV F ATT+P K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQRHDLSFVGI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + LE + +E+I E ++L+L+A A GS+RD+LSL DQ ++S G VS + V Sbjct: 181 DPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQGPVSHEMVLEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + L A++ + + +++ G + + EMLG + MV+L Sbjct: 241 LGIIDREVIFGLSGAVLAGDMTGALDILDTVYRGGHDIKRFYAEMLGHFRDLLMVKLGVR 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + +M+ R + + +L + ++ ++ VEM ++ L Sbjct: 301 AERLASLPGWAVEKMQAQTRDVTELFLSQAMALMLAEEDRVRFSSQPKIAVEMVFVKLLH 360 Query: 359 FHPRMPLPEPEVPRQSFAPV-APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P +P+ + A A +AP++ + S+ AR Sbjct: 361 TKPVLPIDTLIQKVDALRKSFAQLAGNGNAPATASKDAAPERNADGAAGVSASRPAQARP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + PV + + A Sbjct: 421 APTENQPRPSSPPPASPLPEETGPVATGTTDPVP--------------------LDNAGT 460 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 W+A A + + + L L Sbjct: 461 WEAI----------------------------------LARIDEQYPLLGANLRNSTLAA 486 Query: 538 QVALNAWKEESDNAVCLHLRSSQRH---LNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + SQ + L + + L + + + L + + Sbjct: 487 M---------EGGRLEIKVYGSQTNKAILAREQSMENLKQVCCDFFKTDINLAVTYTCDT 537 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P + + D + F + Sbjct: 538 Q---PAQPDKQKPRTAGP--------DPLVAEALNIFGGTIVN 569 >UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Tax=Rhodopirellula baltica RepID=Q7UQ66_RHOBA Length = 676 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 177/647 (27%), Positives = 278/647 (42%), Gaps = 23/647 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY V+AR++RP+ F +VGQ+HV AL + R+ HAYLF+G RGVGKTS AR+ AK Sbjct: 36 SYVVVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKA 95 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LN G TA P D + I+ G VD+IEID AS +++ R L NV P+R R+K Sbjct: 96 LNHPDGPTANPDSESDVAQAIDSGEDVDVIEIDGASNRGIDEIRSLRANVGVRPSRSRYK 155 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F ++ + Sbjct: 156 IYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESD 215 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I+ E E AL+LLAR A GS+RD+ SL +Q ++ DG ++ V ML Sbjct: 216 KIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLTADHVHTML 275 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DD + L EAM + + ++ I+EA A G++ L +MLG + V + A Sbjct: 276 GTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVDAGRLAEQMLGYFRDLMAVAVGCEA 335 Query: 302 LGNDMAAIEL--RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AA + + ELA + + + ++ R+ +E T+++ Sbjct: 336 SLMRYAAASMHGSLGELAGRWGLQTVLAIVGLVDETLVRIRHSVHARVLLEATVIQVCHL 395 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + PT +P +++ A Sbjct: 396 PDLQAISDLTAAASGAGGGKSAGEKKKRVAVASSSPSSAAMPTSAVPSSSTSPAAGSDAK 455 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 RV A + P ++ A + Sbjct: 456 VRVDSPAAPSGDH----------RAATSATASVAAGVPSGTPPVNSGSTAATSSQPAPQS 505 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAA-----KLAAEAIERDPWAAQVSQLSLPK 534 P VATP + A E L + W+ + ++ Sbjct: 506 QAVPSGGVATAVATPPQSEGAENSAAANESTTSTDGYPLISGDEATSSWSQVLQEMDPMT 565 Query: 535 LVEQVALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 A + + + ++++ LS + G L Sbjct: 566 ATLAKAAERVDSPEPGVLRMIFPGNSGLAFSRCQMPEHKEEILRTLSRVTGRRATLQFEA 625 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P+ + + ++ + RE I A+ +Q+ AE+ Sbjct: 626 TAVKKIE-PVAAAKPKNKNRMQRMRE-IQANPLVQSCVELLGAEIVR 670 >UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=root RepID=Q2LYB8_SYNAS Length = 588 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 159/443 (35%), Positives = 227/443 (51%), Gaps = 11/443 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLARKWRPQ F DVVGQ+HV+ L N + RI HA+LFSG RGVGKTSIAR+LAK Sbjct: 1 MDYLVLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G TPC VC NCREI +G +D+ EID AS +++ R+L + +++ P R+ Sbjct: 61 AINCEQGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+R +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F + L + Sbjct: 121 KVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL I E I L +A A +GS+RD+ S+ DQ I+ + +AV + Sbjct: 181 RQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG D L EA++ + + + ++ E G++ +L + +V++ Sbjct: 241 LGRTDRRFLFQLSEAVLRRDAGQCLRIVEEGYYAGLDMTYFYTLLLHHFRNLLLVKIVGP 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + + +Q LL + + + R+ +E + R Sbjct: 301 QQELLDLPGNDLSGIEAQVAEVSRETLQQLLDILLAEEESARRSHNPRLHLEAIVCRMAG 360 Query: 359 FHPRMPLPE-------PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP--LPETT 409 P +P+ E E S AP V P P LP Sbjct: 361 LPPALPIEEILSRMEDLETRLASSAPCLSETVPGAASFSPSKPGNSTTVRERPLTLPIVR 420 Query: 410 SQVLAARQQLQRVQGATKAKKSE 432 ++ + R+ + +QGA + Sbjct: 421 TEDRSVREPMAELQGAVRDPAHA 443 >UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB01_KANKD Length = 773 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 229/535 (42%), Positives = 309/535 (57%), Gaps = 13/535 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++ GQEHV AL N + GR+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPKNFDELQGQEHVSRALVNAIESGRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE G+T+ PCG C +C EI++GRFVDLIE+DAASRTKV+DTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGLTSKPCGECGSCVEIDEGRFVDLIEVDAASRTKVDDTRELLENVQYKPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVYLIDEVHMLS SFNALLKTLEEPPEHV FLLATTDPQKLPVT+LSRCLQFHLK ++ Sbjct: 121 YKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLSRCLQFHLKHME 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I E AL+L++R+AEGS+RDALSL DQAIA G G+V + + Sbjct: 181 EQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLLDQAIAFGQGKVQEEDIRT 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLGT+D + L+EA+ + + + E + +++ L E+L +H++A+ Q + Sbjct: 241 MLGTIDHQFMVKLLEALANKDSAEAIKAVAEMSHYPVDFADALKELLSRIHQVAIFQSTG 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L +E A I D+QLYYQ L R++L +AP R G+EM LLR LAF Sbjct: 301 VLLDQAAPYVED----FASKIASDDLQLYYQMGLHARRDLEWAPSPRQGLEMALLRMLAF 356 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 L +V + + + + + QP+SA Q A P S + + Sbjct: 357 R----LEPSQVVQNNSSQTSLDSEAKKKASLKQPESAAQPATVEPGLIENSALENNAAEK 412 Query: 420 QRVQGATKAKK--SEPAAATRARPVNNAALERLASVTDRVQARP--VPSALEKAPAKKEA 475 +K EP +P + A + + T P P + + + Sbjct: 413 YSAPKTAPEQKLEQEPKQEREQKPEPSTAHKTVTEETQSFSDAPEEPPFNPDDYASFSDD 472 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + Q + P+ E A A ++ L Sbjct: 473 EKTEESIVDQYQTASSSKPEEQAAQASSNTVIENKTVKENTAQASSNEQAALASL 527 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 3/282 (1%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + T Q Q+A + + + R Q Sbjct: 488 SSKPEEQAAQASSNTVIENKTVKENTAQASSNEQAALASLHSALGLNFSDDADSDRAPSQ 547 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ + + E + E S D + +PV E+A A+ E Sbjct: 548 KIEQPVQEEVVETGQTETGES-ESTQNEPEQSNDDEFRLQPVQPIEEEAEAESEPATSPK 606 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + L E WA V ++ L Q+A Sbjct: 607 LAQEQVSSVDEISLQETSLEKTVLVEAALEESGPPATEEALQWAQHVKKMDLTGTYHQIA 666 Query: 541 LNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ + +D+ + L + +Q L+ A+Q + EAL+ ++++ + P V TP Sbjct: 667 QSSTVKWLTDDKIQLTVEPTQDILSTDTAKQAIEEALAQYFSKSIKIEWQFAE-PDVATP 725 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 Q + K +A E I Q L + F A LD+ SI+ Sbjct: 726 AMIWQRAAKAKHRKACEMITQHPFAQQLAQKFAATLDKNSIQ 767 >UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 Tax=Desulfovibrionales RepID=A1V9U7_DESVV Length = 622 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 172/645 (26%), Positives = 266/645 (41%), Gaps = 48/645 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L ++RPQTFA+V GQE V L+ R+ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC T T PC C+ CR++ QG VD++EID AS ++D + L + + YAP GR+ Sbjct: 61 ALNCATAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +L E + ++P A++L+AR A GS+RD++SL Q +A G+ +++ + Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L L+EA+ + V ++ E RG++ L E++ + M++ + Sbjct: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + A+ P I +Q L G++ + Sbjct: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRV----------------LT 344 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + P M L + + P + P+ S T + Sbjct: 345 SLEPAMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGCAATIPTPGTQG 404 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 A + A P + R P P+ + Sbjct: 405 TQGTAPAAGMTPSTAAPATPSDAPSPRVPWDEAPPTPPRSGIPPRPAPRMPEASP----- 459 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLV 536 +T + + H + A + D + + + Sbjct: 460 --------ATGRPASTSSSAGASPSHSDASDTAEHTPSGPRTWDGFLEFCQGRNGQGGRL 511 Query: 537 EQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 V A E D + L SS L + Q LA + G + + Sbjct: 512 ATVLRQATPEHGDGVLRLATMSSVQYERLTDAATQTTLAGLVRDYFGDACRVKVH----- 566 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 P + E +A A +Q L+ A + + + Sbjct: 567 ----PPTRVRRTEAELRKEA----EAHPAVQLLKEEMGACILKCT 603 >UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERB2_AMOA5 Length = 629 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 165/639 (25%), Positives = 282/639 (44%), Gaps = 17/639 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RP F+ V+GQ H+ T L N + + HA+LF G RGVGKT+ AR+LAK + Sbjct: 4 FVVSARKYRPSVFSHVLGQAHITTTLKNAIRTNHLAHAFLFCGPRGVGKTTCARILAKAI 63 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ PC CD+C+ Q ++ E+DAAS VED R L+D V+Y P G +K Sbjct: 64 NCQQLTADIEPCNACDSCKSFNQRTSFNIYELDAASNNSVEDVRSLVDQVRYPPQNGAYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + + E Sbjct: 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILSRCQIFDFQRIKPE 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I QL+++ +EHI ++ AL L++ A+G+LRDALS+ D ++ G G+++ +A L Sbjct: 184 DIVQQLKNVSEQEHIPYDEEALHLISLKADGALRDALSMFDVIVSFGAGKLTYEATLENL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 LD L EA+++ + + + + +E G + L ++ + + Q P Sbjct: 244 HILDYSCYFKLTEAILQNDIKACLLIYDEIIQSGFDGLYFLEGLVAHFRSLLVAQ-DPQT 302 Query: 302 --LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L +I+ R A+ P + Q + + ++R VE+ L+ + Sbjct: 303 LPLLEVAPSIQERYGMQAQQASPGFLLDALQLANQCALQYKESLNKRFHVELALIELASK 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + +P V+ + ++ + + V E T Sbjct: 363 MSTGHPKDSVLPNPGVTTVSNNPTIPIVSASKPTNASDRPSAAVNKTEATVVKDNKEADK 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + K+ + A++ +++ A P+ ++K + Sbjct: 423 VIEQVQEELPKTAVSVASKYDRKEEEITQQIKEERPNPAAGLAPNIVKKGVLQS-----T 477 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 P + + + + + E + + E + W A QL L + + Sbjct: 478 IKIPQLSHIKANIDQPKVVETVNTTTVMEASVEFTKEIVLV-HWQAYTQQLKLAERMPAY 536 Query: 540 -ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 LN E +N + + ++ +++L L D AV T Sbjct: 537 NLLNQPIELENNTITIKFTNTVEERILADIKEELVNYLRNNLKHP------AIDVKAVFT 590 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P + + R + ++QTL+ E+ + Sbjct: 591 PTQSGPQRPYTAQERFRYLANKNPHLQTLKEQLQLEVVD 629 >UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 Tax=Shewanella RepID=Q12LL5_SHEDO Length = 921 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 249/593 (41%), Positives = 332/593 (55%), Gaps = 19/593 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLLALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGVTASPCGTCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QLE IL +E + E +AL LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAFGSGQVMLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q + L++++ +A+ +M + + G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDERQVIGLLKSLCDADIAHLMQTTAQVLSFGADADEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + ++ A+ + P +QLYYQ LL GRKEL +APD + G+EM LLRA+AF Sbjct: 301 AAQHSL--YSEQILAFAKQLKPEQVQLYYQILLTGRKELAFAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT-------------VPLPE 407 P + V + + + P+P T P+ + Sbjct: 359 PEKTVNRWVVDDTATLELPNGTSKAAAKTKPEPDVKLSAETTEVTEATETLAVLGTPVAQ 418 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAA-LERLASVTDRVQARPVPSAL 466 T + +A+ + + + + A +A L + AS+ Q S Sbjct: 419 TITAEVASLEVKDTPSDTEQVIEDDEGAPLKALTAEQDVLLSQAASMGFEPQNSNDDSPS 478 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + + + + ++ + Sbjct: 479 SDVVVNDTSSAQANDDASVTDEYADYMHYGFDEQVSEAHPDAYLQEPTLDSHSAEESLLV 538 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML 579 +S+ + E S A+ L + L L+ Sbjct: 539 AEGVSVDGAALSSSAVLNPEVSQEALTLAVSDEA---LAPVVDDILDAVLASR 588 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 4/284 (1%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + AP A T V + V ++ Sbjct: 607 NAGSIKVGVAKKPLGAPQASTQVESVRPQAETEAQNHAPQALVTQEAPLLDKVSTDADRP 666 Query: 421 RVQGATKAKKS-EPAAATRARPVNNAALERLAS--VTDRVQARPVPSALEKAPAKKEAYR 477 A+ +P + P+++A R++S + D+ + +E PA + + Sbjct: 667 PWVAASDGSSQFDPLKLAQDTPLSHAQDNRVSSVGMEDKTTLDSILPVIEALPAIEAEAQ 726 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLV 536 M + A + + +L ++ E D W ++++ + + Sbjct: 727 GTGYAEKMLDTAMPAKLMSDVADDDSGIDAQLISEHQISGHEMDLHWYKMMAEVKIGGRI 786 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 Q+A+N+ + + L L+ Q+HL A ++L ALS V + + + Sbjct: 787 RQLAVNSVCQGLASPFPLLLKPDQKHLGADVAVKQLEAALSEYLQQDVSIAVNVGYDEHR 846 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 TPLE R+ ++E L QA++ +I N +Q L DA+L E+S+ Sbjct: 847 ETPLELRKRFHQELLQQAKQRLIGSNKVQWLLSQLDAQLQEDSL 890 >UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD56_9FIRM Length = 628 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 172/661 (26%), Positives = 277/661 (41%), Gaps = 58/661 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R WRPQ F +VGQEH+ AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MSYVALYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PC CD+CREI +G D+IEIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+P TI SRC +F + + V Sbjct: 121 KVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ + +I EP AL+L+A A+G +RDA+ L DQ V+ + V + Sbjct: 181 DDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA-NPVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +LVE + + + L+N+ G + +L E+L + + + Q PA Sbjct: 240 LGIAGRDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYMRALLLYQADPA 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ + + I + ++ + ++ E+ L Sbjct: 300 YQEIYLTDTAENLKTVEPLFTRSRILAATARIHEASLDVKRSLRSKIVAEICLYDLCRGE 359 Query: 361 PRMPLP-----EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P E + + ++P PP+ + + Q P T+ + + Sbjct: 360 GESPAALMSRIETLEGKVTHLMAGGAPAVSPAFEPPREKRSKTQEAAYASPMATAPDMPS 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + + + + P ++EA Sbjct: 420 VTQKEASFPSAEGPAAIPLE-----------------------------------KRQEA 444 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 K + V Q+ + E+ + + + A + W + L Sbjct: 445 SFEKQASAVPQRAGQKMEAEGASFTPPFEEKTDAPRQPSDLAGAQRLWNGVLQGLKQRHK 504 Query: 536 VEQVA---LNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 + A + + + + ++ L + ++ L G E + + Sbjct: 505 MGFFAYAREATPLDFDGKRLTVGTATQLAKDRLERNDLRDEVLAILKAGTGQNFEFAVEQ 564 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQ------------ARESIIADNNIQTLRRFFDAELDEE 638 + + + + +E ++ F L ++ Sbjct: 565 ASEKQMEAARKTAPRVASRPQHKAAPPAPPKEAPLPKEDDELPETVKRAMMVFGGSLVKD 624 Query: 639 S 639 Sbjct: 625 D 625 >UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C6MGX6_9PROT Length = 537 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 232/534 (43%), Positives = 321/534 (60%), Gaps = 13/534 (2%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS QVLARKWRP+ F ++ GQEHV+ AL N L R+HHAYL +GTRGVGKT+IAR+LA Sbjct: 1 MSQTQVLARKWRPRNFTELTGQEHVVRALTNALEQNRLHHAYLLTGTRGVGKTTIARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCETGITATPCG C C +I+ G F+DL+E+DAAS T+V++ R+LL+N YAP GR Sbjct: 61 KSLNCETGITATPCGTCTTCVQIDSGSFIDLVELDAASNTQVDNMRELLENALYAPTCGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTD QK+P+T+LSRCLQF+LK + Sbjct: 121 YKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSRCLQFNLKQIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 QI L+ IL +E I + +LQL+ARAA+GS+RDALSL DQAIA G G++ +V Sbjct: 181 QPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLLDQAIAFGAGKIEEASVRD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG +D L++A+ + NG ++++L +E AR + ++ L ++ +LHRIA+ Q P Sbjct: 241 MLGIIDHSYLFDLLDALTQKNGLKLLSLADEMEARCLSFDCALQDLAVILHRIALAQAIP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ALG D+ R+ LA+ + P DIQL+YQ L GR +L APD G MTLLR L F Sbjct: 301 QALGEDIPDYI-RINALAKILAPDDIQLFYQIALHGRGDLSLAPDEYAGFTMTLLRMLTF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +PE V Q V+ ++ +V +PQ P P VP + QQL Sbjct: 360 -----MPEDLVAHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVPADNSDLPWPQLVQQL 414 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + A + A A + E + ++ + SAL K A Sbjct: 415 KLAGMAKMLAQHSEAKILSADKIELCVPEVHKHLLEKKYQDKIQSALNTFFGKLVA---- 470 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 TP A+++ E EK + A + + + ++ ++L +P Sbjct: 471 --LDFFVGSITGLTPAAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAKLIIP 522 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 3/164 (1%) Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 Q ++ P++++ E + P++ + A+ + PW V QL L + + +A Sbjct: 366 AHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVPADNSDL-PWPQLVQQLKLAGMAKMLA 424 Query: 541 LNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ + S + + L + +HL + Q K+ AL+ G V L + TP Sbjct: 425 QHSEAKILSADKIELCVPEVHKHLLEKKYQDKIQSALNTFFGKLVALDFFVGSITGL-TP 483 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +Q EEK AQA +I D +Q L FDA+L SI+PI Sbjct: 484 AAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAKLIIPSIKPI 527 >UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 Tax=Shewanella oneidensis RepID=Q8EFG0_SHEON Length = 1002 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 252/573 (43%), Positives = 336/573 (58%), Gaps = 8/573 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA++A GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ-APTVPLPETTSQVLAARQQL 419 P + +V ++ +TP P A +Q A P+ E + + Sbjct: 359 PEKSVKRWQVDDAVKVDLSAQPALTPQATIPPEVPAERQLAVNAPVAEKKTLLATVANPE 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++Q T E A +N A + + + Q++ ++ + + A Sbjct: 419 AQLQAETT---PETALEDDEPELNAALIAEQQVILSQAQSQGFGASADPVVSSNTALNQD 475 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + T + + + + E Q Sbjct: 476 VNSSDPTDPDTALTEQTATEDVLDAQNTAGDLAPEPYVAEAYGQYDYAQSNDAQSNYAQF 535 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 N + + + H + A ++L Sbjct: 536 --NHAQSYDTSTPLDAYQDDYAHFMSEDAAEQL 566 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 1/278 (0%) Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 P + AP++ + VP QSA Q + + A + Sbjct: 704 PELSTKATNAPLAPLSTRPITHSIIVPSTQQSAAAQHLPLDPNDRPPWEDAPVAECHHGN 763 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 + + R + A L +V A + A+ E ++ Sbjct: 764 AEPITTSRQVNEESHLRQESAALHAPLLAVEPVQVAPALTLPTNTQAAQVEQAAGQSHQL 823 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQVALN 542 + P+ L A +L + D W ++ L + V Q+A+N Sbjct: 824 NHPDEVPATPPRELDAAAPPAPASDLTVAQSITGHPLDLHWYKLMASLDIGGRVRQLAVN 883 Query: 543 AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 + + N + L L+ Q+HL + A ++L +AL+ G+ ++ +V +P+ TPLE Sbjct: 884 SICQVQSNPLPLLLKPDQKHLAAQVAIEQLEQALTAALGAPRQVEVVIGTDPSRETPLEL 943 Query: 603 RQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 R+ ++E L QAR+S+I D+N+Q L F AEL+ +S+ Sbjct: 944 RKRFHQELLQQARQSLIMDDNVQWLINRFGAELENDSL 981 >UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJV5_9BACT Length = 533 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 144/409 (35%), Positives = 220/409 (53%), Gaps = 1/409 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ F +V QEH+ L + ++ RI HAYLF+G RGVGKTS+AR+LAK Sbjct: 1 MSYIVLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC C NC EI G D+IEID AS T V+D R+L + Y + + Sbjct: 61 SLNCVNGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPASSSNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+++FNALLKTLEEPP++V F+ ATT+PQK+ TI+SRC ++ K + + Sbjct: 121 KIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I + +L L+AR A+G +RDALSL DQAI+ ++ V + Sbjct: 181 ASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + + + + + ++ ++ +GI+ + + M + I +++ Sbjct: 241 FGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFVR-ILILRKLQV 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ELA + L+ R +L + + + +E +++ Sbjct: 300 QIKDINPDELSLFDELAELFGQNKLLYILSYLIACRNDLRGSSNPYLILEALMIKLCKLD 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 + A P ++ +PT S + VPL E T Sbjct: 360 EMEDIASLIGKININAFAQPVSMASPTTAKTIQSSYVASSAEVPLREET 408 >UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGG2_9ACTN Length = 862 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 175/598 (29%), Positives = 269/598 (44%), Gaps = 10/598 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RPQTF DVVGQ H+ + N L R+ HAYLF G RG GKT++ARLLAK L Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALL 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 CE G T P G C+ C I +G D+ E+DAASRT VE+ R+ ++ VQ+AP RGR+K+ Sbjct: 63 CEKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRGRYKI 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDP K+P TI SRC +F L E+ Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L + E + E AL+L A+ A+G +RDAL+ +Q IA G+G+V+ Q +LG Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD + +V + + + E G + ++ + + L+ AL Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTDGAL 302 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +A ++ A P + L EL + + R+ E+ L R Sbjct: 303 EPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARPESD 362 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + L + + ++ + +V + A + Sbjct: 363 LTLASLAARVEELERACAQGARPVDAPAVRVAASMFDSTSVADVPMAASAAADAPSASGL 422 Query: 423 QGA--TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A+ + A + PV + A+ +A + + A + Sbjct: 423 SPSVIAAARAIKGGGAPSSVPVVDTGAPASAASDASGSDASSGAAAVASAERIPAVQSGL 482 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-LPKLVEQV 539 + + + + E + + AKL+ A + W A V+++ L + Sbjct: 483 DSSPAPAADSPSASEPKLAFSSAEPSEAVRAKLSNPAALQRGWQAAVAEVKNLRTAYGAL 542 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK------LAEALSMLKGSTVELTIVED 591 L+A A L + S + A QK ++ AL+ G V + Sbjct: 543 LLSASVSPVQGASGLAVEFSHENSFAFSAVQKPEVSEMVSAALAHAFGGEVPFEFTQG 600 >UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 Tax=Gammaproteobacteria RepID=Q0HHZ2_SHESM Length = 1071 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 248/520 (47%), Positives = 319/520 (61%), Gaps = 3/520 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMT-PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+ +V + + T P QA TS V + Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPSTIPAATEQAVNRVENQAEAEKKTPLTSTVDSQPAAT 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + VQ ++ S ++ A+ A V + Q + A Sbjct: 419 EAVQSGFMSEPSVADPTLPQPEISKASQASQALVAEAAQQLLSDEDVSAVDGDDTAGEES 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 A + ++ V +A + + + + Sbjct: 479 ALNAALIAEQQVILSQAQSQGFGASTEVVSSTEAVLISES 518 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 106/274 (38%), Gaps = 4/274 (1%) Query: 368 PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATK 427 AP + P + A P+ + AR Sbjct: 780 NASLPAHVAPAPHPQFDPNDRPPWEEAPVDTLADVEPVATSYQGSETARAPQVSQTPQPI 839 Query: 428 AKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQ 487 EP AT + + + + R A PV Q Sbjct: 840 IAPQEPELATGIAHSASIPTLPTDTGAANTKTANSEETRVEQAIAPHPQRDTAAQPVTQT 899 Query: 488 KEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQVALNAWKE 546 + P++ ++ + + L + D W ++ L + V Q+A+N+ + Sbjct: 900 QTP---PQSSEETQQSAPSTALTLAQSITGHPLDLHWYKLMASLEIGGRVRQLAVNSICQ 956 Query: 547 ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 N + L L+ Q+HL+ A ++L +AL+ G+ ++ +V +P TPLE R+ Sbjct: 957 LQANPLPLLLKPDQKHLSAPVAIEQLEQALTAALGNPRQVEVVIGIDPTRETPLELRKRF 1016 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 1017 HQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1050 >UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E6B7 Length = 834 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 268/695 (38%), Positives = 369/695 (53%), Gaps = 56/695 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+TA++N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPNKFSELVGQEHVVTAISNALDNNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG++A PCG C CR+IEQGRFVDL+EIDAASRTKV+DTR+LLDNVQY P +G + Sbjct: 61 SLNCDTGLSANPCGECGTCRDIEQGRFVDLLEIDAASRTKVDDTRELLDNVQYRPTQGDY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI+ QL H+L +EHI HEP AL LARAA GS+RDALSLTDQAIA G+ Q+ST VS M Sbjct: 181 EQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSLTDQAIAQGNNQISTVVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ +M+E + V + A + +L E++ LLH+IAM Q+ P Sbjct: 241 LGLMDKNQILKILHSMIEGDKIAVFEQVESLAQTSPNYAHVLDELMSLLHQIAMTQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + +LA +I +QL YQ L G+++LP++ D R G EM LLR LAF Sbjct: 301 VCKLETISARA-IYKLAGSISKEHVQLLYQMALNGKQDLPHSMDGRSGFEMVLLRMLAFT 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ ++ V +P+ + + P + + + Sbjct: 360 PVTPIDGFVDIIKTDMQNHIAEVGEMVTFAAEPEVVSPEPTILEAPVIEQEPKSTTNPMI 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A K ++P + ++ + PV +E E + A Sbjct: 420 ESESAVDPK-AQPETIVPYQSEVREEIDPEPTTAPEPVKEPVSVIVEDEENSAEKVDFSA 478 Query: 481 TTPVM------------------------QQKEVVATPKALKKALEHEKTPELAAKLAAE 516 M + + + +A E + L E Sbjct: 479 VMNDMFSEPEPEPEPEQPQVSVSTLQGPDESAMFQEQAEIMHEAHEMHPSQFDEQSLPPE 538 Query: 517 AIERDPWAAQVSQLSLPKLVE----QVALNAWKEESDNAVCLHLRS----SQRHLNNRGA 568 A D ++ + + + + VA NA + + L+ S S L + + Sbjct: 539 AYMNDDYSDVPIDVQVEQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKAS 598 Query: 569 QQKL---AEALSMLKGST------------VELTIVEDDNPAVR---TPLEWRQAIYEEK 610 KL ++ KG + ++L V D TP+ I E Sbjct: 599 INKLDSETPIVAEHKGESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTEP 658 Query: 611 LAQARESI--IADNNIQTLRRFFDAELDEESIRPI 643 QA D + L ++EL + +++ + Sbjct: 659 EVQAESLSQPERDPSKMGLVD--NSELVKVTVQKV 691 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 6/286 (2%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E E Q + +P L E S + Sbjct: 549 PIDVQVEQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKASINKLDSETPI 608 Query: 421 RVQGATKAKKS-EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + ++K E ++ A + + P+ + + E+ Sbjct: 609 VAEHKGESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTEPEVQAESLSQP 668 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA---AEAIERDPWAAQVSQLSLPKLV 536 P + + + + A + D W + QL+L L Sbjct: 669 ERDPSKMGLVDNSELVKVTVQKVDVQGLQAILPNGDKLTSAAQIDEWTNVIGQLNLTGLN 728 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 +Q+A++A + V L L + HL+N + LAEALS+ +++ L + + + Sbjct: 729 KQLAIHASFSREGDVVTLLLGQDKAHLHNETSVNALAEALSVFFDTSITLQVSFGEP--I 786 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TP + I + + A+ + ++ +Q L+ F + +++P Sbjct: 787 NTPYALQMHINQIRNEYAQSILNSNPELQKLQSTFGTSVVSGTLKP 832 >UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 Tax=Bacteria RepID=A3QF53_SHELP Length = 1113 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 246/521 (47%), Positives = 319/521 (61%), Gaps = 7/521 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L + Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + ++ A++LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D+ + L++A+ + + + +M + + + G + +L +L LLH+I + Q +P+ Sbjct: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ +++ A+ + P +QLYYQ LL GR++LP+APD + G+EM LLRA+AF Sbjct: 301 AAQ--LSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358 Query: 361 PRMPLPEPEVPRQS----FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAA 415 P P+ S P P + P P SQ A Sbjct: 359 PEAPVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEAE 418 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + V+ K + S A+ + E+ ++D Sbjct: 419 VEDKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADST 478 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 + L +A +PEL+A+L+ Sbjct: 479 EKDALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTN 519 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 94/264 (35%) Query: 377 PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAA 436 + P S V P LA + Q A ++ Sbjct: 822 SAQQPNAYLNDEDRPPWVSPEPSLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQG 881 Query: 437 TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKA 496 + + +L+ + + + E+ + + V+ P A Sbjct: 882 LDELSLEDQSLDDQSLDDQSLDDQSSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSA 941 Query: 497 LKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHL 556 + + + A W +S L + V Q+A+NA + + L L Sbjct: 942 VTEPVSQTTQVAFVADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVL 1001 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 + +Q+HL GA +L +ALS G + ++ P TPLE RQ + E L QA + Sbjct: 1002 KPNQKHLAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQ 1061 Query: 617 SIIADNNIQTLRRFFDAELDEESI 640 ++ D NIQ L + AE++ +S+ Sbjct: 1062 GLLQDENIQWLTQVMQAEMEPDSL 1085 >UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79 Tax=Bacillaceae RepID=Q65PK1_BACLD Length = 566 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 232/475 (48%), Gaps = 6/475 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A+L AK Sbjct: 1 MSYQALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I+ E + + AL ++A AA+G +RDALSL DQA++ +++ + Sbjct: 181 QAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L + E N + +NE +G + L+ +M+ + + Q +P Sbjct: 241 TGAVSQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL-- 357 + ++ + L+R IP +D+ L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDEEFQTLSRQIPASDLYEMIDILNKSHQEMKWTNHPRIFFEVAVVKLCQG 360 Query: 358 --AFHPRMPLPEPEVPRQSFAP-VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 A PE + + V A + + P S A Sbjct: 361 PKAGASAAAQPEVDNLVNKVRQLEQEIERLKTQGVQVSSAPAQAKEASRPQKSIKSAYKA 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 ++ + E + + + S + +A KA Sbjct: 421 PVGRIHEILKDATRPDLEKLKGCWGQLLAQLKQQNKVSHAALLNDSEPVAASSKA 475 >UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridium RepID=B8I549_CLOCE Length = 562 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 148/454 (32%), Positives = 224/454 (49%), Gaps = 2/454 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWRP F DVV QEHV+ + N + GRI HAYLF GTRG GKT++A++ A+ Sbjct: 1 MSYTALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I +D++EIDAAS V++ R++ D V YAP++ R+ Sbjct: 61 AINCINPKDGNPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDP KLP TILSRC +F K + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +++ I I + L+AR A+G+LRDALS+ DQ IA G ++ Q V Sbjct: 181 AGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGSTTITYQNVLDA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--S 298 +G + DD +V+ + N E ++A + +A G + +++ + + +L + Sbjct: 241 IGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +M + + + L +L YA ++R+ +E+ L+ Sbjct: 301 PENILDVGKQYLDKMIAQSEAFTKERLIGIIKELSSFETQLKYALNQRVFLEVMLISISV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + + P + + Sbjct: 361 GSYGQSGSDNNLLDRITNLESAVRTGATALGPSVKDRSSVSVQVNVANTSPVPSGKKLDN 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLAS 452 L + G++ K S + L L + Sbjct: 421 LPPIPGSSVPKSSAKGNSFNELEEWANILSDLKA 454 >UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 Tax=Clostridiales RepID=A9KQC7_CLOPH Length = 522 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 149/426 (34%), Positives = 234/426 (54%), Gaps = 8/426 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP TF DV GQ+H++T L N + RI HAYLF GTRG GKT++A++LAK Sbjct: 1 MSYMALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC C C+ I+ +++IEIDAAS V++ R++++ V+Y+P G + Sbjct: 61 TVNCEHPIDGNPCNECAMCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPTEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 ++I +L I +E I E +AL+ +ARAA+GS RDALSL DQ IA GQ ++ V Sbjct: 181 DEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYFGQSLTYDNVLD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LGT+D + L+ + + + +A++ E +G E ++ L + + + S Sbjct: 241 ALGTVDIEVFARLLRYIRKGSVTDCVAILEELIIQGRELTQFTIDFTWYLRNLLLAKTSE 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + +++ A++ + + + ++ YA +R+ +E+ L++ Sbjct: 301 DMEEILEMSSDQLQLLKQEAQSCDTELLIRFIRIFSELSNQVKYATQKRVMIEVALVKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAP-----VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 Q V T+ P + A + + V LP+ S Sbjct: 361 KPAMETDYASLIHRIQVLENRLEEGVFVTSKDEIEGAVPVVEKAKKASVPVELPKAVSAD 420 Query: 413 LAARQQ 418 L + Sbjct: 421 LQEVAR 426 >UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZX2_HALOH Length = 588 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 142/390 (36%), Positives = 224/390 (57%), Gaps = 2/390 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L RK+RPQ F D+VGQ HV+ L N L GRI HAYLF+G RG GKTS A++ A Sbjct: 1 MGFLSLYRKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+NCR+I++G+ +D+IEIDAAS +++ R+L + V++ P G + Sbjct: 61 ALNCIHGPTTEPCGQCENCRKIQKGQSIDVIEIDAASNRGIDEIRELREKVKFYPNEGEY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPPE V F+LATT+P ++ TILSRC +F L V Sbjct: 121 KVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQRFDFSLLPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ +L +I +E + E AL +LAR+A G LRDA+SL DQAI+ ++ V M Sbjct: 181 REIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISYTGNNLNPIDVQGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-SP 299 LG + + ++ ++ N + L+N +RG L+ +++ ++ +V+ P Sbjct: 241 LGKVSREVLSQFIKYVLNGNSVEALKLVNRIISRGNNVGRLIGDLIEYGRQLLLVKECGP 300 Query: 300 AALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + ++ AR I + + L + +++ Y+ + R+ +E+ +++ Sbjct: 301 DSRIIEYPDEVLEKISGEARAIKTSRLIEIIDQLTVMERDIKYSDEPRLILEVGIIKMAN 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ 388 + + E + + Sbjct: 361 PEAGGSIIDLEKRIARLENIISGKITANDG 390 >UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 Tax=Nostocaceae RepID=B2J7Q6_NOSP7 Length = 707 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 169/617 (27%), Positives = 266/617 (43%), Gaps = 44/617 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RP++FA++VGQE + T L N + +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC TA PCGVCD C+ I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLKSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L I ++E+I P A+ L+A+ ++G LRDA SL DQ + G V+ V Sbjct: 181 QLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQ-LGLLAGVVTPDRVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ + L L+ A+ + E V+ ++ RG E L + + + + + Sbjct: 240 DLVGTVSEQDLLGLLNAIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + E A+ T I + L ++ + R+ +E+TLL Sbjct: 300 PNRHDLVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L T P P AP+ P P V Sbjct: 360 L------------------------PSATTNIQPQAPNIAPRVIPPAVSPSYPPAVTQNH 395 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + ++ A+ + VT + A + Sbjct: 396 AVSSLPVAEPQTNHNSTLRQGSVTTNHHVAIAQNQPVTSSGAVEQQKNHNSAANSVSPPT 455 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 PV T + + +A W ++ L Sbjct: 456 PEPVAVPVPSAIVEAVTSEVVGEAQYDLTQ---------------VWQQVLANLQPKSRQ 500 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 E + + E D + + + + A +++ I + + Sbjct: 501 EMLRQMSQLIEFDGVMARIAIKQAWYDKGKSYLPMITAAFQQTFQREIQINIEKGISSNS 560 Query: 597 RTPLEWRQAIYEEKLAQ 613 + + ++ Q Sbjct: 561 TSAKKNPPPKDSSRVQQ 577 >UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobacteria RepID=Q47HW9_DECAR Length = 537 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 238/532 (44%), Positives = 315/532 (59%), Gaps = 6/532 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+ +VGQEHV+ AL + LS R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRNFSTLVGQEHVVRALTHALSEQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C C+EI+ GRFVDL+E+DAA+ T+V++ R LL+N YAP RGRF Sbjct: 61 SLNCETGITATPCGTCSACQEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L HIL E I + AL L+AR+A GS+RDALSL DQAIA G G+V V +M Sbjct: 181 LAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLLDQAIAHGAGRVEEAQVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D D +++EA+ A ++ + + R + + A L E+ LL R+ + Q P Sbjct: 241 LGTVDQDYLFTILEALHGAEPSALLQVAADLGIRSLSFSAALQELGALLTRLQIAQCVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D R++ LA + P +QL YQ + GR EL APD G MTLLR F Sbjct: 301 AIDDDEPE-RDRLKGLAAALSPEFVQLAYQIVNAGRNELAAAPDEYAGFVMTLLRLYTFR 359 Query: 361 PR--MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + VPR + A P AV + S P+ LP S + Q Sbjct: 360 PSTVADVVGAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPVIIPKLPPIASGEMDWHQI 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + A++ R + N L RL+ +Q RP P L++A + Sbjct: 420 VASLSLSGLARELAQNCELR-QLSENQCLLRLSPAQGHLQMRPNPDRLQQALSDFFGRPL 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + Q TP E+ A +A + RD + + L Sbjct: 479 QVRIELAQ--NENVTPAETVGRQRQEQQERAATAIAQDTFVRDVIESFDASL 528 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 118/352 (33%), Gaps = 21/352 (5%) Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + ++ + ++ ++ + A + + + + D+ T Sbjct: 205 LVARSAAGSMRDALSLLDQAIAHGAGRVEEAQV-----------RSMLGTVDQDYLF--T 251 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 +L AL EP Q A + ++ + + +P Sbjct: 252 ILEALHGA------EPSALLQVAADLGIRSLSFSAALQELGALLTRLQIAQCVPGAIDDD 305 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 R +L+ + A + + A N A + + + A Sbjct: 306 EPERDRLKGLAAALSPEFVQLAYQIVNAGRNELAAAPDEYAGFVMTLLRLYTFRPSTVAD 365 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + V A + + P + KL A W V+ LSL Sbjct: 366 VVGAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPVIIPKLPPIASGEMDWHQIVASLSL 425 Query: 533 PKLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 L ++A N + S+N L L +Q HL R +L +ALS G +++ I Sbjct: 426 SGLARELAQNCELRQLSENQCLLRLSPAQGHLQMRPNPDRLQQALSDFFGRPLQVRIELA 485 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 N V TP E +E+ +A +I D ++ + FDA L E SI+PI Sbjct: 486 QNENV-TPAETVGRQRQEQQERAATAIAQDTFVRDVIESFDASLVESSIKPI 536 >UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter sp. MED105 RepID=A6GQQ4_9BURK Length = 586 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 225/638 (35%), Positives = 320/638 (50%), Gaps = 68/638 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LARKWRP+ F +VGQ HV+ AL++ L R+HHAYLF+GTRGVGKT+IAR+LA+ +N Sbjct: 7 QALARKWRPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARAVN 66 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE GI+ TPCG C C EI QGRFVDL+E+DAA+ T+V++ R LL+N YAP GR+KVY Sbjct: 67 CEQGISRTPCGKCQACVEISQGRFVDLLEVDAATNTRVDEMRALLENAMYAPTAGRYKVY 126 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNA+LKTLEEPP HV F+LATTDPQK+P T+LSRCLQF L+ L +Q+ Sbjct: 127 VIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPPDQL 186 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L HIL+EE IA EP AL+LLA+AA GS+RDALSLTDQAIA G V+ V MLG Sbjct: 187 ADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSAGHVTEDTVRTMLGA 246 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D L++A+ + +G+ ++ L N AA + A+L E+ + +R+++ + Sbjct: 247 IDQQVVHQLLQALAQGDGKALLELSNALAAASAPFGAILDELAAIAYRLSVAHFAGGLDA 306 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +D + ++ L D+QL YQ R EL AP+ +G M L+R LAF P Sbjct: 307 DDP--DQAALQNLQGAFGAEDLQLIYQIATHARAELHLAPEEHIGFSMALVRMLAFKPG- 363 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 +SAP V A Q + Sbjct: 364 ------------------------GQGAVTRSAPLAPAVVKATVPVMAAKPAVAQSPLPK 399 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 A +A A P + A + + + P P Sbjct: 400 AAPQAAAPAVADDFDESPPWDTADDLPVAQSQPAAPAIKP------------------QP 441 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 V Q P A P+++ ++ A+ + R A Sbjct: 442 VYNQSASGDLPSATN-------WPQVSQEVPAKGLTRQALVQ--------------AELV 480 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 + + + LR++ + +L AL GSTV L + + A +T + Sbjct: 481 EASREGDVLQIVLRTAIKAYTEASMVTRLEGALGQYYGSTVRLQMQFGE--AQQTAHAVQ 538 Query: 604 QAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + L A++++ D ++ ++ A + S R Sbjct: 539 SETRRQALEGAKQALQEDPFLKDIQNLMGATVVSGSER 576 >UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBE6_9GAMM Length = 636 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 237/643 (36%), Positives = 336/643 (52%), Gaps = 14/643 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+ F ++VGQ HV AL L RIHHAYLF+GTRGVGKT+IAR+ AK L Sbjct: 2 YQVLARKWRPKNFHELVGQTHVTQALTYALDHNRIHHAYLFTGTRGVGKTTIARIFAKSL 61 Query: 63 NCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ +++ PCG CD+C+EI+QGRF DLIE+DAASR++VE+TR+LLDNV YAP +G++K Sbjct: 62 NCQKNHVSSNPCGECDHCKEIDQGRFPDLIEVDAASRSRVEETRELLDNVPYAPVKGQYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM S SFNALLKTLEEPP HVKF+LATTDPQKLP TILSRCLQFHLK + Sbjct: 122 VYLIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILSRCLQFHLKNMSER 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 QI L HIL EH +EP AL LLA AA GS+RD+LSL DQA+A G G V T+ V+ +L Sbjct: 182 QISEHLAHILQAEHAEYEPDALHLLANAAAGSMRDSLSLLDQALAYGRGHVRTRDVATLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + + Q L +++ + + + + ++ LL+ +L + +I + QL Sbjct: 242 GAVPEPQLLHMLQLLANGDAPGLRNTLESLDEYAPDYAGLLLRLLQQMQKITIAQLGAER 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ A + +P +QL+YQ + LPY PD RM +EM+LLR +A P Sbjct: 302 YAEEIPAALHALAA---RLPVELLQLWYQIGNEAWQNLPYQPDARMALEMSLLRMIALQP 358 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P +P + AP + + Q A P+ + A Sbjct: 359 LLPTSDP-AQARPVREAAPASDSLTASLQAQTTPATATPAATTEPQAVAPSETASHGEAP 417 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 T +EPA + + D P E P E R A Sbjct: 418 AAPTTATVHAEPADN-----EPPPWEDTTPAAADDSNDAVPPWVSETIPDDSE--RTPAK 470 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER-DPWAAQVSQLSLPKLVEQVA 540 P +A A A + P + I+ + W+ ++ L L + + Sbjct: 471 KPESAPAAAIAPETAAPAAAKKPAAPPANTTDPGDLIDNLERWSDFLASLDLHEYPLLLL 530 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 N+ + L L ++ + AQ + A ++ + TI A++TP+ Sbjct: 531 ENSVPASWQAPL-LSLYTAPTGIIFDQAQNREQAAAAIAHALGIACTIEIQPADALKTPI 589 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E+R+ +A + + I+ + F L ++I+P+ Sbjct: 590 EYRRQKNAAAQQRAEQDFLNHPQIRAAQATFGPALQVDNIQPL 632 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 174/639 (27%), Positives = 274/639 (42%), Gaps = 59/639 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY V+ARKWRPQTF +VVGQ HV L N + RI H+YLF+G RGVGKTSIAR+LAK Sbjct: 1 MSYLVIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T TPC VC NC EI QG VD++EID AS ++ R+L + V+Y PA+ R+ Sbjct: 61 ALNCETGVTPTPCNVCSNCTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYRPAKSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPEHV F+ ATT+P K+P TILSRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRFDFRRIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L HI +E +A L +AR A+GS+RDA SL +Q ++ +S + V + Sbjct: 181 HMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSRDGLSDEEVLDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A++E + + ++ + RG++ ++ + +V Sbjct: 241 LGVIDRRSIHRTGTAVLEGDVRTCLDVVEDIYRRGMDIRRFCRQLCDYFRNLLVVAFGEG 300 Query: 301 AL--GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + E A P + LY+QT+L +E+ + R+ A Sbjct: 301 DSRRLDLPSDEKQLLAEAAGKTTPESLYLYFQTVLKSEEEIRRSTIPRI----------A 350 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + +S V + + V ++ A Sbjct: 351 LEMLLLRLARLPRLESLQGVLDKISALEQGLKGATTGGGGSSAAVRDTRPPAREAARAAP 410 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + ++A R + + A+ + + P E P + + RW Sbjct: 411 PPMREPPPPGTGASHSSAGTGRDAPDPIVPEPATGGETIPDLPRIEG-EAVPLEDLSGRW 469 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A ++ KE + K + + + ++ E+ Sbjct: 470 PAFLKWLELKEPILAAKLARSRIGSAAADSVELEVVEVFEEQ------------------ 511 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 L ++ +A TI + R Sbjct: 512 ------------------------LREPQTVARIGDAAEAFFRRRCAWTIRKKPEGTGRG 547 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + ++ ++ + EL + Sbjct: 548 DTQREKKKKA----LSKRLVMEHPVVLQALEILGGELVD 582 >UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15RT3_PSEA6 Length = 914 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 244/586 (41%), Positives = 333/586 (56%), Gaps = 15/586 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+ A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ + PCG C C EIEQG FVDL+EIDAASRTKVEDTR+LLDNVQY P+RGR+ Sbjct: 61 SLNCELGMGSKPCGKCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL+H+ +E + + P AL +ARAA+GS+RDALSL+DQAIA G+G VS V+ M Sbjct: 181 AQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAIAQGNGNVSLSIVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L L+ A++ E V L++ + + +++ +L E++ LLH++A+ Q P Sbjct: 241 LGLMDKTQVLKLLNAVLNKQNESVFELVDFMSEQAVDYSQVLNELMSLLHQVALTQFVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + +LA+ P IQL YQ L G++++P+A D R G+EMTLLR LAF Sbjct: 301 ACKLETISARA-IYQLAKNALPEHIQLLYQIALQGKRDMPFAADARTGLEMTLLRMLAFS 359 Query: 361 P---RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P + E S AP + + P V ET +A + Sbjct: 360 PVQVNTSVEELVAMTPSSAPSSGPSSAPLPMRDKHDLVTPTDDTPVESKETVVAAMAQAE 419 Query: 418 QLQRVQGATK--------AKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + + AT+ A K P+ A+ + N+ + + Q V + + Sbjct: 420 EAPQAPIATEIDNTQRVAAPKDAPSTASDSTSNNDFTNDSDFTARQNTQPLEVMGSKSER 479 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 +++ T E+ + I ++ Q Sbjct: 480 ADNAATQNQVEGAAAVEKTLADETSAQPFDDDEYHSAQMQDMEAQQAGILQEAEYFIQPQ 539 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEA 575 P + + +A SQ + ++KL +A Sbjct: 540 TQQPHDTNTAVDHQQEVHQQDASK---PQSQSTESLLALRRKLTQA 582 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 2/272 (0%) Query: 371 PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKK 430 S +P T P A + + + Sbjct: 644 EPSSPEQYSPEQATPYTYSAQADAPYPNDADVPNANQAELGEAPPWATDDANNQTSLNEF 703 Query: 431 SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEV 490 ++ + + + + A + + Sbjct: 704 NDINDINEVTVNEVTGGDVSVNELSHEALALDEVTVPVDAQEDIAENQQEIENTVFDPTA 763 Query: 491 VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN 550 + + + A + D W+A ++Q+ + L +Q+AL++ + + Sbjct: 764 HLAQDLECEVDYEVPAFLESGEKVTIAPQLDKWSALITQMQVAALTKQLALHSEFTQDGD 823 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 V L+L ++ HLN A+++L ALS + + L + D A+ TP +Q+I + Sbjct: 824 KVVLNLVQTKEHLNTDSAKEQLQRALSDVLQQQITLEVHVGD--AINTPFALQQSINRVR 881 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A++ + + +I + F+A++ +SI+ Sbjct: 882 FEYAKQVVETNESICMFKDMFNAQVLNDSIKA 913 >UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 Tax=Shewanella RepID=A1RIP8_SHESW Length = 984 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 256/550 (46%), Positives = 331/550 (60%), Gaps = 18/550 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 DEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVIALLKALTDADITVLMQTSAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 CAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V +P V P +A + + Q Sbjct: 386 PEKPVKRWQVE-------SPAEVSLPVGQTSTSLAALATSAAEKKTDLVEQ-----PTDV 433 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE---KAPAKKEAYR 477 V A + A + + + S ++ P+++E A ++ E + Sbjct: 434 NVHAAVEINAPSDTADSALFAEQTLIISQALSQGYKLSESIAPTSIEIPVAAISQSEDTK 493 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + +Q V T + + + +A I +D +A+ S+ E Sbjct: 494 VETLVSTNEQAVVNNTDSDTQLDYVYGHG-DYTQDVAPLDIYQDDYASFSSESYSSLTQE 552 Query: 538 QVALNAWKEE 547 VA A Sbjct: 553 MVAEQATINP 562 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 106/306 (34%), Gaps = 22/306 (7%) Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV------PPQPQSAPQQAPTVPLPETTS 410 L F + P P +S +P AV +Q + AP + S Sbjct: 641 LDFKRKEPTIGPLSATRSDITTSPKAVKAVSQSVESIDSEFDFDDDFEPAPQMDGGFAQS 700 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A + + ++ + + A + + Sbjct: 701 VTQANKNPEASQPLTQNGQITQNGQKPSGEKPVSVDDPNDRPPWEAAPATNMQHPVVHPV 760 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKAL--KKALEHEKTPELAAKLAAEAIERD------- 521 + E A + + +E L + + + Sbjct: 761 SALEPVVPTAMQDELAPIDQAPHTPVSLMSDPIEDAVKESLTEPVTGLSNQTGLSVVQSV 820 Query: 522 -------PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAE 574 W ++ L + V Q+A+N+ + + + L L+ Q+HL A +L + Sbjct: 821 SGNPLDLHWYKLMASLDIGGRVRQLAVNSVCQAQSDPLPLLLKPDQKHLAADVAIVQLEQ 880 Query: 575 ALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAE 634 AL+ G+ + +V +P TPLE R+ ++E L QA++S+I D+N+Q L + AE Sbjct: 881 ALTAALGNPRRVQVVIGSDPKRETPLELRKRFHQELLQQAQQSLIKDDNVQWLIQRLGAE 940 Query: 635 LDEESI 640 LD +++ Sbjct: 941 LDTDTL 946 >UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B5_LYSSC Length = 636 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 161/508 (31%), Positives = 254/508 (50%), Gaps = 19/508 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VL RK+RPQ F +++GQ HV L N + ++ HAYLF+G RG GKTS A++ AK LNC Sbjct: 7 VLYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKLLNC 66 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 ++ I PCG C C++ D+IE+DAAS V+D RDL + V YAPA G+ KVY+ Sbjct: 67 QSPIDYNPCGECVCCQD----SNTDIIEMDAASNNGVDDIRDLREKVNYAPAFGKKKVYI 122 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS +FNALLKTLEEPP H+ F+LATT+P K+P TILSRC ++ + + + I Sbjct: 123 IDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQDDIV 182 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 H+++ I+ E + E +AL+L+++ A G +RDALSL DQAI+ +G+V+ Q + + G + Sbjct: 183 HRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVEGKVTLQDIIEITGAV 242 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D + +L++ + ++N E + N G E L EM+ L I + + Sbjct: 243 DTRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEKATL 302 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + + E+A ++ P I Y L + + D ++ +EMT++ + + P Sbjct: 303 KKGHNDPQFYEIANSVGPDKIYDYMDLLNKAHSNMKFHNDVQLLMEMTIIEMINNQNQSP 362 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 + +Q + + + Q A T E T++ A ++ +QG Sbjct: 363 S----ILQQQIDELKQFIMGGNYSLQ-------QVAVTQNATEKTNEESLANIDIKDIQG 411 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 A+ L + + +PS P+K + P Sbjct: 412 MMLNDPIGFIEASEEATKKGDDWTNLVT----EETVVIPSEKLTPPSKPLPPHEEHLEPP 467 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAK 512 + P +++ EL K Sbjct: 468 HVDDDEHLEPPSIEVENLATHNNELNPK 495 >UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WR18_9SYNE Length = 745 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 172/605 (28%), Positives = 279/605 (46%), Gaps = 15/605 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQTF+ +VGQ+ + L + L RI AYLF G RG GKTS AR+LAK L Sbjct: 2 YEPLHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSL 61 Query: 63 NCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + TA PCG CD C+ + QG +D++EIDAAS T V++ R+L++ Q+AP + R+ Sbjct: 62 NCLSSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQCRY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DEVHMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + Sbjct: 122 KLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +I EE I EP A+QL+A+ ++G LRDA SL DQ ++ +++ + V + Sbjct: 182 PSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQ-LSLQANKITVETVWDL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + L+LV A+ + ++ + +G E +L ++G + + + +P Sbjct: 241 VGAVPERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPK 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + M A+ + + Q L ++ R+ +E+TL L Sbjct: 301 RVDLVAITSPTWAEMIPFAQKLSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLL- 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + +++ A A T T +A + + + +A Sbjct: 360 -----PSALEVMAKRTPASNAATNPATNRANSAAVDNARETTAATDITSSVKPKIAPSIT 414 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV-PSALEKAPAKKEAYR 477 V+ A + P + +P AA S T+ + P P + A+ Sbjct: 415 PPIVKPAIASTIQHPVPPSVDQPAQTAATGASKSPTEPPVSLPAIPGEPNEPKAELSDSS 474 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER--DPWAAQVSQLSLPKL 535 + + V++ P A P K A A D W ++ L Sbjct: 475 ASSNNLDPAKAAVLSDPSAASATQPTPLKPAAPEKPIAVAFGNLSDLWKQILAVLQPRGT 534 Query: 536 VEQVALNAWKEESDNA-VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 ++ D + RS+ R L A + +++++ D Sbjct: 535 QMLMSQQGMLLGFDGVGAKVGFRSAPLQKAARERIPNLEAAFQTVFQRPIKISLEVVDTS 594 Query: 595 AVRTP 599 P Sbjct: 595 KPVDP 599 >UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 Tax=Thermoanaerobacterales RepID=C6PF43_CLOTS Length = 533 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 142/429 (33%), Positives = 224/429 (52%), Gaps = 1/429 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP+ F++V+GQ H++ L N + GRI HAYLF GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C C +D+IEIDAAS V+D R+L DN+ YAP+ ++KV Sbjct: 62 NCPNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TILSRC +F K + + Sbjct: 122 YIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSKV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + I + +I E RA+ ++AR GS+RDA+S+ +Q ++ + ++ V +LG Sbjct: 182 ISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSY-NDVLTYDDVCDILG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 T++DD +LV+ + + N + V+ I++ GI+ L+ ML L I + + Sbjct: 241 TVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCGTES 300 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + A + + + L+ + ++ YA R+ E+T+L+ + Sbjct: 301 EEILETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLMNPEIS 360 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + + + +V A + + + Sbjct: 361 PDIDSILDRIKKLENRLNNVKVAFNGENDAGIISKKDVVKSEKGVQNDKVAADEIKKEHI 420 Query: 423 QGATKAKKS 431 + A KS Sbjct: 421 EITESADKS 429 >UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Psychromonas RepID=A1SX03_PSYIN Length = 774 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 229/524 (43%), Positives = 309/524 (58%), Gaps = 4/524 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VVGQ+HVLTAL+N L+ R+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TATPCG C +C+ I+QGRFVDL+EIDAASRTKV+DTR++LDNVQY PA+GR+ Sbjct: 61 SLNCEKGVTATPCGACVHCQAIDQGRFVDLLEIDAASRTKVDDTREMLDNVQYKPAQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+T+LSRCLQFHLKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQFHLKAILP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL +ILN E E AL ++A AAEGS+RDALSLTDQA+A G G ++ Q+V M Sbjct: 181 QEIETQLAYILNHEQATFEHAALTVIATAAEGSMRDALSLTDQALAFGSGHIAYQSVLKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D++ L+ + N +V I+E G ++ L + L H IA+ Q+ P Sbjct: 241 LGSIDNNHLHYLLHFIASGNVSKVFLKIDEFVHLGADFAMLHQTLASLCHEIALSQMQPK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ LA + P ++QLYYQ + G K+ +AP+ ++ EMT++R LAF Sbjct: 301 Q----NVTQKSAVQLLAERLTPEEVQLYYQIAVQGYKDYAFAPNGKIAFEMTVMRLLAFK 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E + + + P+ E Q AA Q +Q Sbjct: 357 PANYISLDERQLGNPNSAEASDAQQSNIAAASESVESVEIAEAPVIENLQQNPAASQIVQ 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + +S + + +++ Q EK E + Sbjct: 417 QEPKSADSVQSTSPSVEPLQRSAASSVPPPIERQPEPQQNQSAPPSEKIAPVAEVSHSRN 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + K A + A+ + D + Sbjct: 477 MLRSHRLKRESAKKNQATTTEQPASVVASGAENVTAEFKADKYQ 520 >UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=2 Tax=Psychrobacter RepID=A5WFF8_PSYWF Length = 751 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 2/492 (0%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP+ F ++VGQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L Sbjct: 1 MSQQYQVLARKYRPKNFHELVGQSHVSKALINAIDHNRLHHAYLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +K LNCETG+T+TPCGVC +C I+QGRF+DLIEIDAASRTKVEDTR+L+DNV YAP +G Sbjct: 61 SKCLNCETGVTSTPCGVCSSCVAIDQGRFIDLIEIDAASRTKVEDTRELIDNVPYAPTQG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 121 RYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + + ++L +E+I AL LA AA+GS+RDALSLTDQAIA G G+++ + V+ Sbjct: 181 PQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAFGQGRLTDETVN 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG +D +SL+ + + N + A I + A+ ++ ++ + LLH+IAMVQL Sbjct: 241 DMLGLIDSADLISLLLDIYQGNAPALSAHIEQMRAQLVDAGSMFDGLADLLHQIAMVQLL 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P N ++ LA I P +QLYYQ ++ GR+++ A +EM LLR LA Sbjct: 301 PNVSLNVNDLQAQQITALAAQIGPDVLQLYYQIVIQGREQIKLANTPLQALEMCLLRLLA 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + A A + ++ A Q + ++ + Sbjct: 361 FRPLALNEVAVASSNTPAHKASSDQPASIEMQAPNPHADQAEDYLTEQALSATSTESMAD 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + ++ + +L+S + + + A Sbjct: 421 TNIEPQSPNVNDADINNTANIDVKTHQDDYQLSSTSGADINPASLNETDFATPLASEPTA 480 Query: 479 KATTPVMQQKEV 490 + T P ++++ V Sbjct: 481 QDTRPQLEEQAV 492 >UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 Tax=Proteobacteria RepID=A0KY06_SHESA Length = 1040 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 246/549 (44%), Positives = 320/549 (58%), Gaps = 2/549 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V + + + T P V +T Q L Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERDSQTLP 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + KSE A++ L ++ D + A ++ + + Sbjct: 419 QAAISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQAHSQGFG 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + K E +A + + + Sbjct: 479 ANAETVSRTEALSTPEAKVDSSAESNSVSMPASNIDAEHNQAATVDTASVDQGPSPATLT 538 Query: 541 LNAWKEESD 549 D Sbjct: 539 EPVALSLDD 547 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 1/281 (0%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E E+ +S + V PT + P PP ++ P + + Sbjct: 739 PFDDDFEAELHLESQSNVTPTPPLDPNDRPPWEEAPVAAMDETHAPAASVNLQTESPVAA 798 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A + ++ L + S P + +A Sbjct: 799 QTAVEHLGAAPVAAQISPTDREATRVVQALEQAAGQESEPATQSPEPNTPQQPQAKELTQ 858 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQV 539 Q ++ + + ++ + LA + D W ++ L + V Q+ Sbjct: 859 PKTQPQTQQPASVQSQSSETVQPTSSTALALAQSITGHPLDLHWYKLMASLEIGGRVRQL 918 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 A+N+ + N + L L+ Q+HL A ++L +AL+ G+ ++ +V +PA TP Sbjct: 919 AVNSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALGNPRQVEVVIGTDPARETP 978 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 LE R+ ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 979 LEMRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1019 >UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 Tax=Alkaliphilus RepID=A8MKQ3_ALKOO Length = 563 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 242/473 (51%), Gaps = 8/473 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R++RP+ F DV+GQ+ V+T L N +S I HAYLF+GTRG GKTS A++ A+ Sbjct: 1 MSYKALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + A PC C+ C I +D+IEIDAAS V++ R++ +NV+Y P++G++ Sbjct: 61 AVNCLSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYPPSKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TILSRC +F K + + Sbjct: 121 KIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE I + I E AL+L+A ++G+LRDALS+ +Q I+ + ++ V + Sbjct: 181 NDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG ++ + LV+ + + V+ LIN+ G + L+ +++ I + +++ Sbjct: 241 LGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQ 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + R+R+ I + L +L Y+ + +E+ ++ + Sbjct: 301 LDELLTLPEERQDRLRQQGALFTINQITSFIYNLSDIESKLKYSAQPKTLIEIGIVGLCS 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L Q + + + P ++ + ++ Sbjct: 361 KALDDSLEGLIERVQDL------ERKLASGNIKVEPHYNKSQISTPQNRSSHKTQPIEEK 414 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + Q + + +T PV++ A ++ + Q EK Sbjct: 415 QEYKQPESSPPSVDANESTAEEPVHSGAPLNFDALKESWQQILEELRKEKKAQ 467 >UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PXF7_9SPHI Length = 596 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 153/551 (27%), Positives = 250/551 (45%), Gaps = 6/551 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ+H+ L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE CGVCD+C+ + G + E+DAAS V+D R+L+D V+ P G++ Sbjct: 63 INCEHITSEVEACGVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + V Sbjct: 123 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIRV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L I +E + ++ L ++A+ A+G LRDALS+ DQ ++ + Q+S Q+V Sbjct: 183 EDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFSNKQISYQSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D L +A+++ + + ++ RG + + + L + + + Sbjct: 243 LNILDYDYYFKLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGGLSSHLRNLLVTKEPAT 302 Query: 301 ALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 D++ I+ R E ++ + + + ++R+ VE+ LL+ Sbjct: 303 LKLLDVSDNIKKRYLEQSQKVSSGLLLSALNISNQCEINYKTSKNQRLQVELALLKMCHI 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + V S QP S P P+ TS + A L Sbjct: 363 ATAIQMSQNGVLSGSAEVKKKRPDSAVAAPVSQPVSVPAPV-VTPVSIPTSAEIKAPPSL 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + K ++ ++ L ++ + Q + K EAYR Sbjct: 422 AKPVENHPPKLADSGKKGWGAVKVGVSIPNLNTIFEEKQVEESEGP---SLVKGEAYREV 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 +Q+ A + + A + Q+ + + Sbjct: 479 NLNEFLQKWNEFAERLKAENKINLYTLMTSAPPKLQPDNLIEVEVENAIQMDVLTSAKID 538 Query: 540 ALNAWKEESDN 550 LN + E N Sbjct: 539 ILNFLRVELQN 549 >UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKH0_FIBSS Length = 575 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 179/575 (31%), Positives = 288/575 (50%), Gaps = 7/575 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +ARKWRPQ+F+D+VGQEH+ L N + GR+HHA+LF+GTRGVGKT+ AR+LA+ Sbjct: 1 MAYIAMARKWRPQSFSDMVGQEHIAKTLENAIQGGRLHHAFLFTGTRGVGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG CD+C++I G +D+ EIDAAS T V++ RD+++ VQY P G++ Sbjct: 61 TLNCKGSDPLHPCGECDSCKDIAGGNPMDVYEIDAASNTSVDNIRDVIERVQYPPVIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS +FNALLKTLEEPP HV F+ ATT+ K+P TILSR +F K L V Sbjct: 121 KIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQRFDFKRLTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QIR +L +I +E I AL + A A+GS+RD L+ DQA A +++ ++V ++ Sbjct: 181 DQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFTGNEMTAESVRSV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 LG + SL++++ + + ++++A GIE+ LL L + +L Sbjct: 241 LGIPPVELFFSLIQSIENHDIKGCFRMVDDAVKIGIEFIPLLDGFGKFLRNLLYARLDAF 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +P AL N + + + A+++ DI + L+ + L Y+ + R+ VE T R Sbjct: 301 TPDAL-NITEELYTKYKSCAQSLTNGDILRISKMLIDLQGTLRYSTNPRLLVETTFARMA 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTP-TQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + L + AV T+V + + + P + Sbjct: 360 WLDRLVDLRKALAAINDPKSAENDAVKKKVTEVSAMIDAQEEVQASYDDPFAGYDQGGVQ 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A A + A D Q P P AL A + + A Sbjct: 420 AFSRYEISAAWPSILSNIANDGDYVFSAAIAGTTLETGDPEQN-PFPIALTYAGSTENAE 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 W + V + L+ L+ + + + E+ + AA++S L L Sbjct: 479 NWGYRQMTEHPEYVERVTRILEDRLQTKIALSIRTRAFTESELAEQRAAKMSPYELD-LE 537 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 ++ L+ ++ + + + L + ++ Sbjct: 538 KEPGLSKLQQMFATELVFTKKLKKAALVAQTDEED 572 >UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT Length = 564 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 237/474 (50%), Gaps = 12/474 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVL RKWRPQ F+DVVGQ V L N L GRI HAYLF+G+RG GKT+ A++LAK + Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAV 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C I+ G +D++EIDAAS VE+ R+L + + PA +++V Sbjct: 65 NCLSLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ KLP TILSRC +F +D E Sbjct: 125 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEV 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ + EE+ E A L+AR A+G +RDALSL DQ + +++ + VS G Sbjct: 185 IADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCM-GRSSEITLEVVSETAG 243 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--SPA 300 D SL + ++ NG + + I+E + L E+ G + +++ +P Sbjct: 244 LAGRDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFRNLMLLKTMKNPQ 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +++ A L ++ + DRR+ +EM LL+ + Sbjct: 304 NLIVVSQDEYQKLQVQAEAFTLAGTIHAIDVLQAAKERMFRGFDRRVELEMALLKLCS-- 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PE+ A + A + P+ A AP++ P + + + Q Sbjct: 362 -------PELDESVDAILRRLARLEKQPRAVIPEQAEAAAPSIKPPAAPMESQRPQTKPQ 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + EPAA P E D + + P E Sbjct: 415 GTNAEPEGCGEEPAAEAADMPQEQEPPEDKKGPVDMEALQQGAKRMTDWPEVLE 468 >UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUH2_9FIRM Length = 577 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 148/599 (24%), Positives = 260/599 (43%), Gaps = 41/599 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RK+RP F ++GQE ++ +L N + + HAYLFSGTRG GKTS A++ A+ + Sbjct: 2 YKALYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE I PC C +C I VD++E+DAAS V+D RDL D V Y P ++KV Sbjct: 62 NCEHPIDGNPCNKCKSCLSILNNTSVDVVEMDAASNNGVDDIRDLKDKVIYPPTFLKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLK LEEPP H+ F+LATT+ +K+P TILSR +F + +E Sbjct: 122 YIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSLEN 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I E + QL+A+ ++G++RDALS+ DQ ++ +S + +LG Sbjct: 182 IIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L A + + R +++I++ A +G ++ +L ++L + + +V+ Sbjct: 242 ISSSESLFELTSAYLNKDAARAISVIDDIAIQGKDFLSLNNQLLKHMRDLMLVRTLKNPE 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + +E A T +I L + L YA + R+ +EMT ++ Sbjct: 302 NLVYSTYLKDFKEQAATCDLDNILDIIDELKDLQVNLKYAENPRILLEMTSIKICNKKNF 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 L + + S + L + + + Sbjct: 362 KSL-----QLNLDNLSKRVEKLEFLGSLTKESSNNKNIYRQSLEKPNENDIINLNSDMKS 416 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + K S+ + +E + + Sbjct: 417 ENEVLEKSSQSDPL--------------------------------SVKTEENSDYNRSI 444 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 +++ + + + L +TPE + + + + + ++ LV + Sbjct: 445 DEDKKEYHKNSLENIDDQLVDNETPEKSLGINDIKKDWNEILNDLKAVNQVPLVGLLNDA 504 Query: 543 AWKEESDNAVCLHLRSSQR-HL---NNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + + + HL N + + L G +++ I D+ ++ Sbjct: 505 KPLSFENGTLNICYGPGHEFHLKSTNEPKRLEIIKSVLKKRYGMDIDVKISIADDTTLK 563 >UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Coriobacteriaceae RepID=C7MLT3_CRYCD Length = 900 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 176/626 (28%), Positives = 275/626 (43%), Gaps = 24/626 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L RK+RPQ F DVVGQEH+ L N + ++ HAYLF G RG GKT++ARLLAK Sbjct: 1 MA-EALYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR 119 L CE G T+ P G C C+EI +G D+ E+DAASRT VE+ R+ ++ V +AP RG+ Sbjct: 60 ALLCEKGPTSEPDGSCRECQEIAEGVHPDVYELDAASRTGVENVREEIIGRVNFAPTRGK 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDPQK+P TI SRC +F L Sbjct: 120 AKIYIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQRFDFHRLS 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+I +L + E++ E AL L+A A+G +R+AL+ +Q IA G+G+V+ Sbjct: 180 NEEIVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGEGKVTVAGAED 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG+LD ++ A+ + + + G + +M + + ++ L+ Sbjct: 240 LLGSLDSSDLAEIMAAVGVRDAAACFSWVASYVETGADLAQFTRDMAQQVRNLYVMSLAG 299 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + A + + P + L EL A ++R+ E+ L R + Sbjct: 300 TDAALDVTDAERRELASELKLFGPNRLTHLLSILGELSSELRTASNQRLAFEIALTRMIR 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L ++ + P Q ++ Q +P S + Sbjct: 360 PESDLTLEALAARIETLEEQLAQSKQPAQSTPSQREAVAQSESAAGIPVQASAHVPPVGA 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVT---DRVQARPVPSALEKAPAKKEA 475 Q Q PAA + A + SV + P + + Sbjct: 420 SQPAQPVPVVVPQSPAATSVAAANPSTPAVSQTSVPVQGAVQASMPASQSSATTATQSPT 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 ++ +PV+Q V T E A ++ A + W VS + K+ Sbjct: 480 PATQSNSPVVQPTASVETAAG-----------ETAEIISNPAALQRVWRQVVSIVKREKV 528 Query: 536 VEQVAL--NAWKEESDNAVCLHLRS-----SQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 V L + + ++ L + ++ L A G + L + Sbjct: 529 SYGVLLVNASVQVQAGGQGVAILFPADNPLAFSMAQKPEVKEVLEGAFRQAIGKDIPLAL 588 Query: 589 VEDDNPAVRTPLEWRQAIYEEKLAQA 614 + + + + A Sbjct: 589 KQKPSSTTQGAASGEPLERSPLDSSA 614 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 208/359 (57%), Gaps = 2/359 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RK+RP F +VVGQ H++ L N + RI HAYLF G RG GKTSIA++ AK Sbjct: 1 MAYQALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PCGVC+NC+ G D+IEIDAAS V++ R+L+D V+YAP +G++ Sbjct: 61 TLNCTNSQDA-PCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHM++ +FNALLKT+EEPP HV F+ ATT+P K+ TI+SRC +F + V Sbjct: 120 KIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSV 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+++L + E I + L L+A+ A+G +RDALS+ DQ +A + + + Sbjct: 180 NDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L ++ + + +R + I + + G++ + L + + +L ++ S Sbjct: 240 YGVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYSEN 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + +R+ ++ P + L+ + YA + +E +LL+ ++ Sbjct: 300 S-TLVSDMNKDMIRKYFKSAPIHFRIQCMEELMDTYNKYTYASNALDYLEASLLKISSY 357 >UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE33_ACHLI Length = 564 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 159/501 (31%), Positives = 263/501 (52%), Gaps = 14/501 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R +RP+ F DV GQ+ ++ L N L +I HAY+FSG RG GKTS+A+++AK Sbjct: 1 MSYVALYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG CD C +++G D+IEIDAAS V++ RDL D V+YAP+ G++ Sbjct: 61 ALNCLEAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP++V F+LATT+P K+P TILSRC +F K +++ Sbjct: 121 KVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFDFKNIEM 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L+ I+N+E++ P AL +AR AEG +RDALSL DQ ++ + +++ + + + Sbjct: 181 DQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFTNDEITEEDIYTV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L L++ + ++ + L+N+ G + ++ +++ L + + ++ P Sbjct: 241 SGGLSRRYINELLKVIYLKQPQKALDLLNQIIKDGKDIARMVSDIILALRDVLLDKIRPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D+ I+ + I Y L ++EL + +R +E+ L++ + Sbjct: 301 KKYPDLKDIKPNL-----------IYAYLDILNDLQQELKFTTSKRAYLELALIKMINHE 349 Query: 361 P-RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 M E ++ V ++ QV + P Q P ++ ++ Sbjct: 350 SIEMVSLEDKITHLESDIVKLKELVNKAQVSQEAVKTPVQNIPASRPTNLKALVTVKEIE 409 Query: 420 QRVQGATKAKKSEPAAA-TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + A + K+S + +N +L+ +A + V + + Y Sbjct: 410 DILNHADRQKRSLLNRGWPVLKDYDNPSLKPVAELLSEGTLEAVGNEDVMLLVYDDLYTA 469 Query: 479 KAT-TPVMQQKEVVATPKALK 498 K P ++QK + + K Sbjct: 470 KTMLNPEIKQKVLEILNQKQK 490 >UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Tax=Marinomonas sp. MED121 RepID=A3YHQ6_9GAMM Length = 823 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 231/516 (44%), Positives = 314/516 (60%), Gaps = 5/516 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFIELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG C +C EI +GRFVDLIE+DAASRTKVEDTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGISPEPCGTCGSCVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + LE +L E ++++ L + +AA GS+RDALSLTDQAIA G+G +S V++ Sbjct: 181 PGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAFGNGHISETDVTS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q + L++A+V+++ ++ L+N+ A ++ A+ +L LLHRIA+ Q P Sbjct: 241 MLGLVNQAQVVGLLDAIVQSDAANLLKLVNDLADYQPDFVAICASLLDLLHRIAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + +++ +A+ +P IQL+YQT+LIG+++LP A + G EM LLR +AF Sbjct: 301 GALEDQLGD-LAKVKLIAQQVPSEVIQLFYQTMLIGKRDLPLAHSPKAGFEMLLLRLIAF 359 Query: 360 HPRMPLP---EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P P +A + + Q T P+ ++ A Sbjct: 360 RPAQATSVSTSPVALVTHTPESTSSASDASEPLIQNEIDSSVQEITAKYPDVKHEIDQAI 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V+ + K + +P+ N L+ Q A+K + Sbjct: 420 SVATDVEKNLEPLKPLTNEPSTNKPLINKTLKGEGDKATIDQQGEQKDETLNVTAEKHSP 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAK 512 A+ V Q + T + + + + AAK Sbjct: 480 VNSASASVSSQTTEMDTKPPFEADEKPKVLDQAAAK 515 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 46/330 (13%), Positives = 106/330 (32%), Gaps = 19/330 (5%) Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPR 372 + + A D+ Q + + +T + A + Sbjct: 509 LDQAAAKEKMADLNKIMQDQGETKPD-----SAETLASVTETKLAAKELDSLPEQDVEAS 563 Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 + A TP + A+ V G+ + Sbjct: 564 LNEDDAAAQQRQTPAST---------GLSQQTQTDQALNNDASEDSGLEVDGSEDGDLED 614 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 + +++ A++R A + +Q++ + + EA KA ++ Sbjct: 615 SDSEDDIELIDDHAMDRSAELVAVMQSQTIEVEEIAPITETEALVEKAIATNLEDVSYTK 674 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA- 551 ++ AL + P + W +L L LV+ + +N+ E+ Sbjct: 675 AQIIVQPALGEKVEPIDHFSK----MTMQMWWLIAPRLPLTGLVQNILMNSCMLEAGEQG 730 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L + H+ N+ +++ A+S + V L I ++ + T E+ + + + Sbjct: 731 IKLEVPLEYGHMLNQVRYEQIQGAISHYFDAVVPLIINTVEDVSGVTAEEFAASKRAQAM 790 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIR 641 +A E + A +Q L +L +S++ Sbjct: 791 QEAIEHLNAHPIVQALSSTMGGQLIYDSVK 820 >UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZS6_UNCTG Length = 531 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 140/399 (35%), Positives = 220/399 (55%), Gaps = 3/399 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F +VVGQEH+ L N +S RI HAYLFSG RG GKT++AR+LAK Sbjct: 1 MAYLVLARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G T PCGVC+NC EI + VD++EID AS ++D R L +NV+++ A ++ Sbjct: 61 ALNCKNGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDE H ++ +FNALLKTLEEPP HV F++ATT+ K+P+TILSRC ++ K + Sbjct: 121 KIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ ++ I EE + AL ++ A+ GS+RDALSL DQA++S G+++ + + Sbjct: 181 AEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D +S+ + + + + ++ ++ E +G ++ L + + ++P Sbjct: 241 LGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHLRNVMIYSINP- 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ + + + L +E+ + R+ +EM LL+ Sbjct: 300 AIAEISSEDKKIFDVQKSLFTVSRYVRMNNLLSKALEEMRWHDQPRILLEMYLLKMS--E 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 P + E T + QP + Sbjct: 358 PYYDVGELINKITDLERNFRTCGNSQLPFEKQPAVRSES 396 >UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=A9D7T4_9GAMM Length = 882 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 250/542 (46%), Positives = 322/542 (59%), Gaps = 7/542 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITA+PCG C +C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGRF Sbjct: 61 GLNCEQGITASPCGQCSSCVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L +E + + AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 181 DEISAQLSYVLTQEQLTFDHAALTLLAKAANGSMRDALSLTDQAIAFGAGTVQLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ LSL A+V+ + E +M +I + + G + E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKHVLSLFNALVQGDIENLMRMIGQILSFGADPEEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA++F Sbjct: 301 AAQLSI--YSEQIKAFAEQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVSFV 358 Query: 361 PRMPLPEPEV--PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P P+ V P + P T P Q P Q + P + + Sbjct: 359 PETPVTRWVVDKPAKVIIPERVTGQDNPQQ-PEAKDKPVSQDNSNGQPTEVQKEPVSEPV 417 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + V A + + E+ ++ PS+L A +A Sbjct: 418 PELVSKPEAAVIPQAEPDDETDDLLALNSEQALILSQASSQGVEPSSLNTAEPDSQAETT 477 Query: 479 KATTPV--MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + E + PEL+ + A+ + D Sbjct: 478 HLDDKAVRLSPPEDPSKVNPPGSNQSELSQPELSPEQLAQDADFDAQYGFQQDEQELGDY 537 Query: 537 EQ 538 + Sbjct: 538 QT 539 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 100/279 (35%) Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + + TP + + ++ P + ++ A Sbjct: 576 ELEDDILAAVLAARDSLLTDLAKTPEESAGKKPEVQRKDFAPPKRQPQAENDDAAPSSLG 635 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 Q + K AA + A +R A + + + Sbjct: 636 GQAIVEVKSDAKAALQSQPVLATAIEDRPPWEESVEVAATENTTSSGGDEQGTDTHPMVS 695 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 + V Q V + +A + P L W +S + + V Q+A+ Sbjct: 696 SQVEAQVPVQDQVQTEIQAQSFDPLPPLGEGEVTGNEVDLNWYRLMSAIDVGGRVRQLAV 755 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 N+ E + L L+ Q+HL A +L EAL + G+ ++++I + TPLE Sbjct: 756 NSVCHEFTEPLSLLLKPIQKHLAAEIAIVQLEEALGKVLGAEIKVSISVGVDGDRETPLE 815 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 RQ + E AQAR+ ++ D N+Q L AEL+ +S+ Sbjct: 816 VRQRFHREIQAQARQGLLTDTNVQWLMSQMGAELENDSL 854 >UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 Tax=Bacteria RepID=D2QBB5_9SPHI Length = 664 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 168/669 (25%), Positives = 269/669 (40%), Gaps = 42/669 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQEH+ T L N + + A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQEHITTTLKNAIKTNHLASAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C++C Q ++ E+DAAS VED R+L+D V+Y P G++ Sbjct: 63 INCQNLTAEGEACDACESCVSFNQNASFNIHELDAASNNSVEDIRNLIDQVRYPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + Sbjct: 123 KIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQIFDFNRIQP 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVSTQAVSA 239 + I + L I +E I E AL L+A+ A+G LRDALS+ D + D + + V Sbjct: 183 QHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAADRIIRYKEVLD 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D L + ++ + + ++E +G + +V + + + + + Sbjct: 243 NLHILDYDYYFKLTDLLLAGKLPQSLLTVDEILRKGFDGHQFIVGLCRHFRDLLVCKDAA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + + A P + + A D+R+ E+ L++ Sbjct: 303 TVQLLQVTENVRKQYLDQAMRAPMSFLLSALSLGGQCDMSYKQAKDQRLHTELWLMKLAN 362 Query: 359 FH--------PRMPLPEPEVPRQS--FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 P +PLP+ P + P Q + AP V Sbjct: 363 LRNLLNWDAMPELPLPQNGAHSTERFTTPESGDEKKNGEHQPSQSRQAPTSPQLVESHPI 422 Query: 409 TSQVLAARQQLQRVQGATKAKKS------------------EPAAATRARPVNNAALERL 450 TS+ + Q A++ + + A AL Sbjct: 423 TSEPVNGYQPANGAAAASQPRSNGYAVASAGTLASSPSVAPSSAGTASVTTPTRPALVAD 482 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A +T + A + + P + P Sbjct: 483 AVMTQPETTGRPEVRPKPVIAPPQRPATSRLRSTVPLTTGPVQPATEAVSDVISTAPTRP 542 Query: 511 AKLAAEAIERDPWAAQ--VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGA 568 K +D W A + Q EQ+ LN + + + L ++ + Sbjct: 543 DKAFTFEDLQDVWRAFSKIRQQQNDSASEQLILNREIVLNGTTIHITLDNTLQVGYLTEV 602 Query: 569 QQKLAEALSMLK-GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + +L L S ++L T E ++ IY + + + + L Sbjct: 603 KPELLGYLRAELQNSQIQLEHTV-------TVQEVKKMIYSSQDKYNYLA-EKNPALHEL 654 Query: 628 RRFFDAELD 636 R+ + E+D Sbjct: 655 RKVLNLEVD 663 >UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 Length = 553 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 228/380 (60%), Gaps = 2/380 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R+WRP+ F+DVVGQ H+ L N + R+ HAYLF GTRG GKTS+A++LAK Sbjct: 1 MSYTTLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C++I QG +D+IE+D AS+ K+ED +D+++NV+Y P G++ Sbjct: 61 AVNCLDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML++ + NA LKTLEEPP +V F+LATTDPQKLPVTILSRC +F + + Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++L I+NEE I + R+L L++R +G++RDALS+ DQAI+ G G+V ++ M Sbjct: 181 SEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--S 298 LG + ++ L ++++E N E M +I++ G + + EM+ L + MV++ + Sbjct: 241 LGLVTNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +++ A+ I +I + ++ + R+ +E+ +++ Sbjct: 301 PEEILDISEENIELLKKQAQKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMCK 360 Query: 359 FHPRMPLPEPEVPRQSFAPV 378 Sbjct: 361 IEYDTSKEIMLSRLNKLEEA 380 >UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD9 Length = 600 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 216/358 (60%), Gaps = 3/358 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RPQTF DV GQE ++T L + + +I HAYLF G RG GKT++A+LLAK Sbjct: 3 MAYKSLYRTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCG C+NC++IE G D+IEIDAAS VE+ R L+D V+YAP +G++ Sbjct: 63 AVNCTGNP--KPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC +F L Sbjct: 121 KVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFDFTRLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ +++++L EE ++ +L+L+AR A G +RDALS+ +Q +A D +S + + Sbjct: 181 QEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAYNDDHLSINDIHTI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D +L++ ++ N + ++++ GI+ + L +++ +L I + + + Sbjct: 241 YGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDILKDIVVYRNTKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + + + I + + L+ ++ A D + E+ LLR Sbjct: 301 A-SIMSVMTQKDLENIVPYITSDECFSFIDILMDASEKYIRATDPHIYFELALLRLCN 357 >UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 Tax=Burkholderia glumae BGR1 RepID=C5AFH6_BURGB Length = 861 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 228/526 (43%), Positives = 301/526 (57%), Gaps = 2/526 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE +A EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ ++G ++A+ +E A R + + L ++ GLLHRIA Q +PA Sbjct: 241 LGALDQTYMVRLLDAIASSDGPEILAIADEMALRSLSFSTALQDLAGLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEA-ADLRRFAEALSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P P+ S A Q Sbjct: 360 PAASGGAPVPGAAPAVAAGGRRAAAPVAPAGAGARDAAAHAMPPVAAAASARPAPAPVAQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A + P A A + A +R A + R + P+ ++A A Sbjct: 420 AAAEPPPAAVAAPRAVPPAAARDVATAKRPAELPVRAEQ-ARPAESDEAAAVAPRESAPD 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + ++ AL TP E R Sbjct: 479 LADEPAESPLASQLESSDVALGAGPTPPAEPAAMLEPSLRADTPPM 524 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 68/220 (30%), Gaps = 10/220 (4%) Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 + A +R + + P+ + P + Y PV Sbjct: 632 NVPTPRPRTAQPSRPAAAADPSAPPPWDDMPPDDYLPISADDHYGPPPDDGY-----LPV 686 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 + P A W + L+L + Q+A N+ Sbjct: 687 FDSSPDDVRVAPQPAPAPADTRPLPPAIALDAIGYAGEWPQLAATLTLKGVAYQLAFNSE 746 Query: 545 K-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 + L + Q + KL AL+ G VE+ + PA RT Sbjct: 747 LISAQGGVLKLAVPVPQ--YADAAQVVKLKTALAEALGKPVEVAVEVG--PARRTAAALD 802 Query: 604 QAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 ++ +A + I AD +Q L R F A + E S+RP+ Sbjct: 803 AVERAKRQREAEQEIGADPFVQQLIRDFGARIVEGSVRPV 842 >UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8F3_MAGSM Length = 605 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 201/643 (31%), Positives = 300/643 (46%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VLARKWRP+ F D++GQEH + AL + L GRI HA+LF+G RG+GKT+++RLLA Sbjct: 6 SYVVLARKWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMC 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC TG+TA PCG CD+CR I +G D+ E+DAASRTKVE R+LLD V Y P+ R+K Sbjct: 66 LNCGTGVTANPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS SFNALLKTLEEPP HVKF+ ATT+ +K+ TILSRC ++ L+ LD + Sbjct: 126 IYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDRD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L H+L+ E IA++ L ++ AA+GS+RDALSL DQAIA G G+V VS +L Sbjct: 186 GLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLLDQAIAHGGGRVDYTHVSGLL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D ++L + ++ G+E LL ++L + H++ Sbjct: 246 GLTDRQAVVALFADLCRGRLLEMLERAAYFHRDGVEPVVLLNDLLDITHQVTRELAVGVG 305 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + ++E+ + +Q+ YQ LL GR++L A R +EM LLRA P Sbjct: 306 DAAQALSEHEGLKEVWPKLGLEHLQMLYQVLLRGREDLQMARLPRQALEMLLLRAAHLRP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 PL + Q A V P V Q+ P T L+ Sbjct: 366 VPPLKQLVESLQRQAGVEPGERQASPAVKKFDAPGVGQSEVAP----TVHFAPKSAALEA 421 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 Q + + P+ + P Sbjct: 422 PQAVQAPQVKRAKKQPTVLAPEPQPPVVPPDWPAVPPLQEEPTVVSPTPPAT-------- 473 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 ++ E + +K L +K + + L+ + + + + Sbjct: 474 ---VESWEKLIEAARIKFPLLAQK---MESHLSLLSYTGGSGPHDPPCMEV------MIA 521 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV-RTPL 600 +A+ E S+ H L +L + G + I + + T Sbjct: 522 HAFAGE----------PSKVH----KNLMDLLVSLKLPNGV---VHIRKSSDGTRPDTEA 564 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E ++ + + D IQ + R F+A++ + P+ Sbjct: 565 EKQKKAQDAYQNALTREVADDPLIQEIERRFEAKIIH--VEPV 605 >UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y576_9FIRM Length = 613 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 146/455 (32%), Positives = 234/455 (51%), Gaps = 12/455 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RP +F +VVGQ+H++T L N + +I HAYLF G RG GKT+IA+LLAK Sbjct: 1 MSYKALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE A PC C +C I+QG D++EIDAAS V++ R+L++ V+YAP GR+ Sbjct: 61 AVNCEDQQNA-PCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+PQK+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ +L +EHI E AL+L+A+ A+G +RDALS+ DQ IA ++ V+ + Sbjct: 180 NEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQNHITAAHVNEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + +++ + + + ++ I +G++ + L +++ +L + + Sbjct: 240 YGITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIEILKECVIFIYTQD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + D+ L+ ++ A E+ +L+ +A Sbjct: 300 VTLLNKINETEANAIINGK-SSRDLLALIDILMETLEKYRTASSAASYFEVAVLKMMA-- 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A V P P P P S PQ + P PE S+ ++ Sbjct: 357 -------ELDQSRRTAAVIPPVYSQPATAPSIPAS-PQASTGKPRPEVQSESTLMPEEAD 408 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 + + P A + + + Sbjct: 409 LTEDTLPLEMMPPLPAPPEETGRVIQEKTVEVHPE 443 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 236/485 (48%), Gaps = 4/485 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRPQ+F ++VGQEHV L N ++ RI HAYLF G RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NCR I G D++EIDAAS V++ R+L + V+YAP G + Sbjct: 61 ALNCSGHGPVRPCNDCLNCRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP +V F+LATT+ K+P TILSRC +F + L V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFDFRRLGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +LE I IA L +AR AEG +RDAL + DQ ++ ++ + V+A+ Sbjct: 181 NEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGDVTAI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D+ + + + E V+ +N+ RG E L ++LG +++ P Sbjct: 241 LGAVADEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTRDLLGHYRDRLILRTVPG 300 Query: 301 ALGNDM--AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A I +++E +D+Q L ++ + R+ +E+ +R Sbjct: 301 AADLVDMPDDIAAKVKETGHVYSVSDLQACIALLSQAENDMKWTTHPRILLEVAFVRIAC 360 Query: 359 FH-PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + P P A A M + + A + + + R Sbjct: 361 REWGKGAGNAPASPTSGGAGGAADMEMRALRRRVESLEAKVREMQQAVENQGAASGEKRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 L + + + + P+A A RLA + A A + Sbjct: 421 SLDS-EALRRPQPAMPSATISKLDEETKAAARLAEGPIHIDQVNACWPNVLAAALERISP 479 Query: 478 WKATT 482 K + Sbjct: 480 LKRSI 484 >UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5L2_9PLAN Length = 715 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 187/645 (28%), Positives = 284/645 (44%), Gaps = 13/645 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ F +VGQ V AL N ++ GR+ HAYLF+G RGVGKTS AR+ +K L Sbjct: 42 YMVVARRYRPQDFTQLVGQAQVSQALGNAINTGRVGHAYLFTGARGVGKTSTARIFSKAL 101 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G T PCGVCD CR + G VD+IEID AS +++ R L V P+R RFK+ Sbjct: 102 NCVNGPTTQPCGVCDICRGVASGDDVDVIEIDGASNRGIDEIRQLRSGVNIRPSRARFKI 161 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TT+ K+P+T+LSRC +F L + Sbjct: 162 YIIDEVHMLTTPAFNALLKTLEEPPEHVKFIFCTTEADKIPITVLSRCQRFDFAPLPSQA 221 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I EH+ EP AL +LAR A GS+RD+ SL +Q ++ G Q++ V LG Sbjct: 222 ILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSYGGKQITVDDVHRALG 281 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--LSPA 300 T + +L+ A+ + + I+ AA G++ L ++LG L ++ S Sbjct: 282 TAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAEQLLGYLRDAMVLSVGASSD 341 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + + E +R LA + Q + L + R VE+ ++R + Sbjct: 342 MLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHGRTLVEVAVVRLCSLG 401 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + +S AP+ T A P + Sbjct: 402 QLDMLADLVAQLKSGAPLPAIPAGTAAAPRAALPPTSLPAAAPSGPPAQKKTAELAPPPP 461 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A PV AA A R P +A PA+ +Y Sbjct: 462 SLAPPAPVAAVSRPTPPVAPPVTRAAEAPRAVEPIRPAPPPRATAAPTTPARSSSYVDDG 521 Query: 481 TT---PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 P +AT + ++ + + D W + ++P+++ Sbjct: 522 EIYEGPSASDLAELATISGSRTSVAPAPVETVRPAPSRLEDASDLWQQVL--STVPEMLA 579 Query: 538 QVALNAWKEESDNAVCLHLR------SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + A A + L +R ++ + + ++ L A+ G + L + Sbjct: 580 EFASKATQTAISAPDRLVVRFPKAYTQAKEYCDRPEKRRDLERAIDQAAGRKLRLELELT 639 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + V P+ Q + I+ F AE+ Sbjct: 640 ADSVVAGPIPSAPQQPRMSRRQRMIDVHRKPIIRQAIEIFGAEVI 684 >UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, putative n=2 Tax=Rhodothermaceae RepID=Q2RZH6_SALRD Length = 728 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 160/535 (29%), Positives = 237/535 (44%), Gaps = 13/535 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP F +VV QEHV L N + + R+ HAYLFSG RGVGKT+ AR+LAK + Sbjct: 6 YLVTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAI 65 Query: 63 NCETGIT-----ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NCET A PC CD+C E GR +++ E+DAAS KV+D R+L + V+ P Sbjct: 66 NCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQG 125 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + KVY++DEVHMLS+ +FNALLKTLEEPP H F+ ATT+P K+ TILSRC +F + Sbjct: 126 DQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRR 185 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + V +I +L I E + + +L LLAR G+LRDALS DQA++ + + Sbjct: 186 IPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGEL 245 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-Q 296 + LG +D D L + + + ++ L+ G + + +LV + L + + Sbjct: 246 TQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVAHS 305 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L AL + R + A D+ ++ +P R+ +E TLL+ Sbjct: 306 LGGEALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKM 365 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L +A P VP +A + A P P + + Sbjct: 366 AQLRRSADLRAVLEKIDRLEQMAEDG-DLPEAVPGDGVTASETASAPPAPPESEKSENTE 424 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK---- 472 + A+ +EP A T ++ P + APA Sbjct: 425 TGGAAGREASPDAAAEPRPGYGPESTAPPNAPEDAPSTKDAESDPKNETPDGAPADVVDE 484 Query: 473 --KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 E + + P+ + + D A Sbjct: 485 AGNETLSASDEDDAPNDDAPNDEAPNDEAPDADAQGPDDGDEPPSSDAPADGTDA 539 >UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and tau n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4B Length = 522 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 135/404 (33%), Positives = 225/404 (55%), Gaps = 5/404 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RPQ F+D+VGQEH+ L N + L RI HAYLF+G+RG GKT+ A++ A+ + Sbjct: 2 YLTLYRKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAYLFTGSRGTGKTTAAKIFARAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ + PC C C+EI +G FV++IE+DAAS V+D R + + V Y PA G +KV Sbjct: 62 NCKNSVDGKPCEKCVVCKEIAEGAFVNIIELDAASHNGVDDIRQINEEVLYTPAVGVYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNA+LKTLEEPP +V F+LATTDPQK+P T+LSRC +F + + Sbjct: 122 YIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQRFDFRRISTSD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 I L + E+I E A++L+AR A+G +RDALS+ +Q I+ D +++ V ++ Sbjct: 182 ICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYIDEKITHSKVLKLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G +D+ ++ A++E + + +A+ NE +G + ++L + + + + Sbjct: 242 GAVDNALLFEMMNAVIEMDAAKAIAVCNEINQQGRNIKQFAKDLLMHTRNLLIAKTTEQK 301 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + + A + I Y + E+ + R+ +E+ +++ Sbjct: 302 TEILDYTQEHVRELTQQANELAIETIFRYIKNFTELDMEMKTSTFPRITLEVAVIKLCT- 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 P + L + V + + + + +++ + T Sbjct: 361 -PEVDLSKDSVLDRMLSIEKQLEEVKKNGIKVVEKASEEAVVTE 403 >UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=cellular organisms RepID=B2GFF0_KOCRD Length = 1264 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 150/534 (28%), Positives = 240/534 (44%), Gaps = 13/534 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TF DV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TATPCG C++CR++ + +D+IE+DAAS V+ RDL + +AP R R+K+ Sbjct: 64 AEGPTATPCGRCESCRDLARDGAGSLDVIEMDAASHGGVDHARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 124 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTHHYPFRLVPPEP 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + LE + EE ++ EP L L+ RA GS+RD+LS+ DQ +A D + +S A+L Sbjct: 184 LMRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQLMAGSDERGISYDLAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A + V + ++ G + + ++L + +V P + Sbjct: 244 GYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRFVEDLLERFRDLVVVNAVPDS 303 Query: 302 LGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 N + R+R A + ++ E+ A ++ +E+ R L Sbjct: 304 AANILHGMPTDQINRLRNQATQLGAAELSRSADITNEALNEMTGATSPQLHLELLCARIL 363 Query: 358 AFHPRMPLPE-----PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + R+ P +PP P +A P P + Sbjct: 364 LPSADDTTRGITSRVDRLERRLSIPRGAGIRPGGPSIPPAPGAADGVDPAAPHAPGADAM 423 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASV-TDRVQARPVPSALEKAPA 471 + + A + + +++ T + +P + P Sbjct: 424 APVAPDSPSSDASAAPAREAADPAPSGPVRQDGSQPGRSALTTPDIAEPSIPEDEAENPR 483 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 + P ++ P A EH+ + + + A Sbjct: 484 GSDHPAAGDPVPQGERGPQGNHPPADGTTTEHDAAGQERSPATGAPADPTKSPA 537 >UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 Tax=Staphylococcus RepID=B9DLF5_STACT Length = 583 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 257/527 (48%), Gaps = 30/527 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N ++ G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + PC CD C+ I QG D+IEIDAAS V++ R++ D V+YAP++ ++ Sbjct: 61 AINCPNSVDGEPCNECDICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L ++ +HI ++ A+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 DQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ +L+ + + A ++ A G E L+ +++ + M + Sbjct: 241 TGSVDEASLNALLNDVANGQVKDAFARYHQFIAEGKEVNRLINDLIYFVRDTIMNKT--- 297 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A E L + + + ++ ++ + E+ L++ Sbjct: 298 ------AQRETEYDALMA-FDLDTLYKMIDLINDTLVSVRFSVNQNVHFEVLLVKMA--- 347 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 E+ ++ APVA + Q+ P + +S +L + L+ Sbjct: 348 --------ELIKEGDAPVANPDM----HSANAHQAPSAPQPAQQNNDVSSALLQRLEHLE 395 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A K + + N+ R + Q V + K K W+ Sbjct: 396 QELNALKQQGVTSTNTPPKQKSNSRGRRRSKNSYSMTQIAKVLDSANKEDIKLLKDHWQE 455 Query: 481 TTPVMQQKEVVA-----TPKALKKALEHEKTPELAAKLAAEAIERDP 522 + A A E + A++ E + D Sbjct: 456 VIDHAKNHNQKALVSLLQNSIPVAASEKSVLVQFEAEIHCEIVNDDD 502 >UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured bacterium URE4 RepID=C0JZX8_9BACT Length = 577 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 160/640 (25%), Positives = 274/640 (42%), Gaps = 75/640 (11%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V ARK+RP +F ++GQ+++ L+N + G++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSQYIVSARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFA 60 Query: 60 KGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC G PCG C++C ++GR + E+DAAS V+D + L++ VQ P G Sbjct: 61 KMINCAHPGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQVPPQVG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ VY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 KYSVYIIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQTYDFNRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L I +E I + +L ++A+ A+G++RDAL++ DQ +A + + V Sbjct: 181 GIPDMVRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFCGTDIKYEDVV 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD D + +VE + + ++ +E ++G + + L + + + + Sbjct: 241 RNLNVLDYDYSFGMVENFLSGSYAAALSSFDEILSKGFNALHFVAALSSHLRDLVVARTA 300 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ ++ R RE A P + A + R+ +E L++ Sbjct: 301 GLDALLELPDSLKQRYREQAARCPLQFLYDALGVTTACEAGYKAAVNPRLHIEFALMKLS 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R + P+P + PQ AP +P + ++ A++ Sbjct: 361 FLTGRTDV----------------------SAAPRPVAVPQAAPVIPSEKPSAIPSEAKE 398 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 A P P+ +AP A Sbjct: 399 SPAPAPADKTAVAVAPV----------------------------PTRQRRAPKNGSALS 430 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A ++K P A + A L +A +D W A +++ + Sbjct: 431 MNAIMQEKEEKPEQEAPVAAE------------AALPDDAAVKDGWKALIAKFEARPRLA 478 Query: 538 QVALNAWKEESDNAVCLHL-----RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 A S+ A + ++Q+ + L + + + ++ + DD Sbjct: 479 NALAKAELRMSEEAGVKSVFFSVSNAAQKQWIEEKLLRDLETSFREIL-QSRKVNLHVDD 537 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 P P E + + EEK A++ + ++ Sbjct: 538 IPEEE-PGEKKPYMPEEK---AKDLMDKHPEVRAFVADLG 573 >UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 Tax=Cystobacterineae RepID=A7HGU5_ANADF Length = 606 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 198/651 (30%), Positives = 293/651 (45%), Gaps = 63/651 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F ++ GQ+HV+ L+N L G++ HA+LF+G RGVGKT+ ARL+AK Sbjct: 1 MNYLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C EI +GR VD++EIDAAS V++ RD+++ V+Y PAR R+ Sbjct: 61 ALNCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARDRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DEVHMLS +FNALLKTLEEPPEHVKF+LATTD K+P TILSRC +F + L + Sbjct: 121 KVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL + E + P AL L+AR AEG +RDALSL DQ A+ AV+ Sbjct: 181 QQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPDEAAVAEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + A+V G ++A + ARG+E + + E++ L + + +L PA Sbjct: 241 LGAVDAAAISRICGALVHREGGALLAELEALHARGLEMKRVAEEIVRHLRNVVVARLVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +R A P + + ++ + R +E+ LL + Sbjct: 301 TPLDLPDGELAEVRAQAAAADPAQLTRLFDLAQRAVVQVKLSEQPRYALEVALLEGVFLA 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E ++ A AP + PP P + P ++ A Sbjct: 361 PGAQVSELVARLEALARGAPLPPRSAPPSPPPPSAVPAPGGQTGAGGAAARTGLASSGTP 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ P A+ P + PS +A RW+A Sbjct: 421 GCAEGSEPAGWRPLPASTGSPAAGHPERSSDASAA------EPSRGAPTAYGSDAERWRA 474 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +++ P + Sbjct: 475 AVDEVEKVSPAGAP-------------------------------------------MLK 491 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR--- 597 + D + L + + + + +L L+ G V L I PA Sbjct: 492 QAVLRGIRDGEIDLVMPTDFLARSVERRRSELEPVLTQFLGRPVRLAISVGAPPAAEAQS 551 Query: 598 ----TP-------LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 TP A + + A+ RE+ NI+ R D +D+ Sbjct: 552 PDATTPTPVPASIAATEAAERQARSARVREAARNHPNIREAVRILDGGVDK 602 >UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax=Desulfovibrio RepID=C4XU00_DESMR Length = 654 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 177/664 (26%), Positives = 274/664 (41%), Gaps = 41/664 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQ FADV GQ+ V L+ + RI AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSTISLTAKYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET T PC VC CR+I G D+IEIDAA+ KV+D R L ++V YAP R+ Sbjct: 61 ALNCETAPTGEPCNVCSQCRQITAGVSPDVIEIDAATHGKVDDARRLKEDVGYAPLNSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP V F+LATT+P K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E + +E +A+ L+AR GS+RD++SL Q +A G +++ + Sbjct: 181 SELEAHLSSVLMREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELTEADARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L+EA+ +G V+ L+ + +G++ L E+ + + +++ + Sbjct: 241 LGLAGQEVFFGLIEAIRAEDGPAVVELLRQVLDKGLDIGFFLRELASMWRNLFLLRQAGE 300 Query: 301 ALG---NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA-----PDRRMGVEMT 352 + A A I I +Q L G++ + + + + M Sbjct: 301 RALPVVDLPAEEAGEWLVWAGRIEAAHIHACWQMTLEGQRRVQTSLEPALALELLLLNMA 360 Query: 353 LL-RALAFHPRMPLPEPEV------------PRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 L R L P + P +PQ Q Sbjct: 361 YLPRLLPLQNLASCAAPAASGPGGSGGSSGRSGGQGGGLTPRQPQGGRPGGYRPQPLADQ 420 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 PET ++ AA P + R + T + Sbjct: 421 VAPYGQPETGPGRDQGGYGRPAAGLDAAPPTAQSAAPRSYPPQAAPPVSRSEAPTPHAAS 480 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 P + A A A P + + ++ A Sbjct: 481 GPGNGSTPPAQAPAAAPAAGGYAPSGSGQSASFAASG--QGHGSSGHDDVPRPPQAAPAG 538 Query: 520 RDPWAAQVSQLSLPKLVEQVALNA---WKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAE 574 W + Q + + + + + + ++ L + ++L E Sbjct: 539 PRTWDGFLRQAGRGSDMVALKHAQGTFSPDPAPGELVVSCTNAFHRGRLAHPDKLRQLTE 598 Query: 575 ALSMLKGSTVELTIVEDDNPAVR-TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDA 633 A G V + + E + R +P + R + + ++ FDA Sbjct: 599 AAEAYFGPGVTVRLTEGEAANDRMSPHDLR------------DYVDNHPEVRQAVTAFDA 646 Query: 634 ELDE 637 E+ E Sbjct: 647 EIIE 650 >UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Betaproteobacteria RepID=Q3SLE5_THIDA Length = 581 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 250/639 (39%), Positives = 340/639 (53%), Gaps = 73/639 (11%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LARKWRP+ FAD+ GQEHV+ AL+N L+ GR+HHAYL +GTRGVGKT++AR+LAK LNC Sbjct: 14 ALARKWRPRAFADLRGQEHVVQALSNALTQGRLHHAYLLTGTRGVGKTTLARILAKCLNC 73 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E+G++ATPCG C C +I+ GRFVDL+E+DAAS T V++ R++LDN QYAP GR+KVY+ Sbjct: 74 ESGVSATPCGTCSACTQIDAGRFVDLLELDAASNTGVDNMREVLDNAQYAPTVGRYKVYI 133 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FN++LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + + Sbjct: 134 IDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKPMTPALVA 193 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L +L +E + EP AL LLARAA GS+RDALSLTDQAIA G G++ AV AMLGT+ Sbjct: 194 GHLGDVLAQERVDAEPAALNLLARAAAGSMRDALSLTDQAIAYGGGRIEAAAVEAMLGTV 253 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D L++A+ +G+ +M A RGI ++A L ++ LL ++A+V +P A+ + Sbjct: 254 RRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDLGNLLTQLALVLHAPGAVED 313 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 A R R A + +QLYYQ L GR++LPYAPD G MTLLR LAF P Sbjct: 314 --GADAERTRAAAEKLDAETVQLYYQIALNGRRDLPYAPDEFSGFCMTLLRMLAFAPATD 371 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 P P P APVA P A AA LQ+ + Sbjct: 372 -PTPRSPGGGRAPVASADSTPAAAPLAAPAPA-------------RVPAAAPAPLQQPEA 417 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 A + +EP AA A AA A A +W V Sbjct: 418 ARQVASAEPLAAEDADSPRAAAAPPDAPFVAAE--------------PAPAAQWDWLAVV 463 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 +L A V+Q ++ Sbjct: 464 ------------------------AGLRLGGMAKMLADHCELVAQTG----------DSV 489 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQ 604 A L + + ++K G +++T + A +TP + R Sbjct: 490 TLRVGEAHKHLLDRAYQDRLTGALREK--------YGPALQITFEVG-SAADQTPQQVRT 540 Query: 605 AIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I E + A+A +I AD ++ L F +++ +I+P+ Sbjct: 541 RIKEARQAEAIAAIEADPFVRELVEQFGGQVEASTIQPL 579 >UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLY2_ACIFE Length = 671 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 252/598 (42%), Gaps = 33/598 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRPQ F D+VGQ + AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MAYVALYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PC C NCREI +G D++EIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTAHPCNQCSNCREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+ TILSRC +F + V Sbjct: 121 KVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFDFRRATV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I LE + HI EP AL+L+A A+G LRDALSL DQ V+ + V + Sbjct: 181 DEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMA-SPVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ LV + + N + + + +G E E +L E+L + + Q Sbjct: 240 LGLVGREKLRELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYFRALLLYQADRE 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E A + I + + +E Y+ +++ E+ L Sbjct: 300 YQEIYLTDTREALAETASLFTSSQIVASVERIHEAIRESKYSLRKKIVGELCLFDLCENR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 A + + P V A+R Q Sbjct: 360 G-------NTEAALLARIDSLEQQVAALRQGNGTAPTFVTAVPAAPAAVQAVSASRPVPQ 412 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 AT + P T A ++ A Sbjct: 413 GPVPATPGPSAPPTGGTVRDAFARMAAAARQEISQEPPAPAPAEPAPVPAPAPLPEARPE 472 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P E + A + W + L Sbjct: 473 AGPA------------------AAPEGEPQFDGSGRAQAQQLWQLVLQGLKQR-RKRTFL 513 Query: 541 LNAWKEE----SDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + A D + L + S+ + + + + L G ++ L +V+ + Sbjct: 514 VYAEMARAADYQDQELLLGVSSAYGKEKMEEPAFRNLIQDILKGAVGQSIRLRVVQQE 571 >UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q117S8_TRIEI Length = 695 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 166/504 (32%), Positives = 262/504 (51%), Gaps = 30/504 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ+ + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAK 60 Query: 61 GLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T +PCG C+ C I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L HI EE I A+Q++A+ A+G LRDA SL DQ ++ G+++ + V Sbjct: 181 PLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQ-LSLLAGEITVERVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + + LVEA+ N +V+ + RG E +L + G + + + + Sbjct: 240 DLVGAVPERDLMVLVEAIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTA 299 Query: 299 PAA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + L ++ + ++ I + L ++ R+ +E+TLL Sbjct: 300 PTSKNLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L P+A+ Q+ Q Q +V TS+ L+ Sbjct: 360 L----------------------PSALPKFNQLEKQETRDISQNVSVKN---TSKNLSQP 394 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + K + SEP ++ P+ + + S T+ + +LE K E+ Sbjct: 395 LTKKPISEKPKQQISEPKEVSKEVPIAPKSEDFFTSSTNDTAKKSSSDSLETDKIKNESE 454 Query: 477 RWKATTPVMQQKEVVATPKALKKA 500 V+ + + +T L + Sbjct: 455 LQNIWEKVLAEVKPHSTQALLSQQ 478 >UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 Tax=Proteobacteria RepID=A3NA70_BURP6 Length = 826 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 220/490 (44%), Positives = 288/490 (58%), Gaps = 1/490 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE IA EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD + L++A+ A+G +++A+ +E A R + + A L ++ LLHRIA Q +PA Sbjct: 241 LGTLDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEA-ADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P SA + AAR + Sbjct: 360 PATTGGGAPAGGVPARVAGAAPKSGARAAAAVGASAVPAVTGATGAALAPKAAAARAATR 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A +A + A+ +R + A + Sbjct: 420 AEAPPAAPARPAAAERGDDASDGDAPVPAKANARASADSRCDERDAQPPADSGSASGAAS 479 Query: 481 TTPVMQQKEV 490 + P E Sbjct: 480 SAPPDTAFES 489 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 81/283 (28%), Gaps = 6/283 (2%) Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 P V R + A A + + A A + +V Sbjct: 533 TPAAGAPVSRATGAAAALDVLRNAGMRVSSGRGAGAGAGAARPAAGPAASPTKPAPRAQV 592 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 T ++ A + P + + Sbjct: 593 SVPTPRARAATGDVPPNGAARAEARSESRGAPPPWEDIPPDDYVPLSMDDGFIPPDDGFV 652 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQVAL 541 PV T L + +AI D W + L L + Q+A Sbjct: 653 PVFDSGPDDVRVAPKPAPAPPVDTRPLPEPIPLDAIGYDGEWPTLAASLPLKGVAYQLAF 712 Query: 542 NAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 N+ + L + Q + KL AL+ G V++ + PA RT Sbjct: 713 NSELTAADGGTLKLAVPVPQ--YADAAQVAKLKAALADALGKPVDVAVEVG--PARRTAA 768 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A ++ +A + + AD ++ L R F A + E SIRP+ Sbjct: 769 ALAAAERAKRQREAEQEMSADPFVRQLLREFGASIVEGSIRPV 811 >UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacillales RepID=C2H810_ENTFC Length = 581 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 175/596 (29%), Positives = 256/596 (42%), Gaps = 37/596 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WR Q F D+VGQ+ V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G D+IEIDAAS VE+ R + D YAP + + Sbjct: 61 AINCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEP E V F+LATT+P K+P TI+SR +F K ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL E I +EP AL ++AR+AEG +RDALS+ DQAI+ +G ++ + Sbjct: 181 ADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L D+ S + A V+ + +N+ A G E L +ML + M Q +P Sbjct: 241 TGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + I ELA+T+ + + L + E+ + + +E+ ++ Sbjct: 301 LVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLAQL- 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P A Q QQ E Sbjct: 360 ----------------PSASVPSAKMALADDQIVKQLQQEIKELRNEIKELRSNTGTVNT 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +VQ + + + R + R A+ Q + V L + + + KA Sbjct: 404 KVQPVQQTNHKKQTSTYRVPTERVYKVLREATRQHLNQVKEVWEDLLMSLSVTQRAMLKA 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAA--------------KLAAEAIERDPWAAQ 526 + PV + + + E I R+ W Sbjct: 464 SEPVAAGPTGLVIAFDYEIVCQRAANDEELQLSVHNNLSRMIKDYAPDPVYITRESWPEL 523 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 + L + E+ A N++ E L Q ++ L GS Sbjct: 524 -RKNYLTQAQEEGAENSFASEESEGEIELLPQEQ-----EVPEETLVVKAEEFFGS 573 >UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S561_SHEAM Length = 909 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 245/527 (46%), Positives = 316/527 (59%), Gaps = 8/527 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ HVL AL N L R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITATPCG C CREI +GRFVDLIE+DAASRTKV+DTR++LDNVQY P+RGRF Sbjct: 61 GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ QL +L+ E + + AL LLA+AA GS+RDALSLTDQAIA G G+V V M Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L+L +A+ + + E ++ A G + + +L +L LLH+I++ Q +PA Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + A+ + P +QLYYQ LL GRK+LPYAPD G+EM+LLRA+ F Sbjct: 301 TAS--ISDNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS--APQQAPTVPLPETTSQVLAARQQ 418 P P+ + A A V T+ PQ+ AP A P + A Sbjct: 359 PEKPVSRWQSGEGVSAAEALKLVAPSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGIAS 418 Query: 419 LQRV---QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS-ALEKAPAKKE 474 ++ A + + + + + + +A ++ Sbjct: 419 TLVAGTHSPVRTTEEPAVKADSSVATEEAPSGDDDVHEAESDALFAEQNLLISQAESQGF 478 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + A + P + + +A ++ +ER Sbjct: 479 NPGYDAVNAGDNDLPLHDAPPLFDEMAYADYPQSYSADISETPVERG 525 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 87/288 (30%), Gaps = 7/288 (2%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + P+ E R + + V T A + T A Sbjct: 596 EAKKPVSSFERRRMAVQETSTVPVTTAPTDKGTQDEISLGAMSANTQTATLTQATASVSG 655 Query: 420 QRVQGATKAKKSEPAAATRARP-VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 V E A AL+ + P A Sbjct: 656 ADVAADYDRPPWEDTATPDDSSKAPELALDYAVNRESAPVNAESPDKAHPEEYTSAAPHT 715 Query: 479 KATTPVMQQKEVVATPKALKKALEHEK------TPELAAKLAAEAIERDPWAAQVSQLSL 532 + P+ + + K E AA W + L + Sbjct: 716 QTPQPLKAESQTALQAKGQTHTDEVSSSDGVHCANHSAASPIGGDETDLRWYKLMGALEI 775 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 V Q+A+N+ N + L L+ Q+HL A +L EALS G E+ + + Sbjct: 776 GGRVRQLAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSKALGHEAEIALEVGE 835 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 P TPL+ R + E L+ AR ++ D + L + A D++SI Sbjct: 836 VPGRETPLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDDSI 883 >UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Tax=Bacilli RepID=Q4L3D4_STAHJ Length = 571 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 213/383 (55%), Gaps = 10/383 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N +S G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C C+ I QG D+IEIDAAS V++ R++ D V+YAP+ ++ Sbjct: 61 AINCLNPQDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI +L + E+ + ++ AL+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 EQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ L + +++ N + ++ + G E L+ +M+ + M + Sbjct: 241 TGSVDEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIYFVRDTIMNKTV-- 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 N+ A + M + + + ++ ++ + E+ L++ Sbjct: 299 ---NNHAEFDALM-----NFDLDMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMV 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAV 383 P V A V Sbjct: 351 KSQPDTVTNVATTQVASQPNNEV 373 >UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcus oceani RepID=Q3J800_NITOC Length = 529 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 227/533 (42%), Positives = 304/533 (57%), Gaps = 18/533 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F VVGQEHV+ AL NGL GR+HHA+LF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+ +TPCG C NC+ I+ G FVDLIE+DAASRT V+DTR+LL+NV YAP+RG + Sbjct: 61 SLNCKEGVRSTPCGKCQNCQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYAPSRGHY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHM S SFNALLKTLEEPP H+KFLLATT+P+KLPVT+LSRCLQF+L+ + Sbjct: 121 KVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSRCLQFNLRRITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L IL E I E AL L+ARAAEGS+RDALSL DQAI G GQV V M Sbjct: 181 KAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLLDQAINYGRGQVMVADVRTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+++ L++A++ NG+ ++ + E A ++ ++L ++L LL R+A+ QL+P Sbjct: 241 LGSIEQGDLFILLDALLAGNGQGLIEKVREICAYSVDISSILADLLHLLQRLALYQLAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA P ++QL+YQ LIG ++L YAPD EM LLR L F Sbjct: 301 TVDDI--DERGIFSSLAARTTPEEVQLFYQIGLIGSRDLTYAPDHHTAFEMILLRMLCFR 358 Query: 361 PRM----------PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 P P PE S P+A P Q + + Sbjct: 359 PADGASSCQALTNPKPEKTGLASSDPPLAQETTSPPLSGNDHWPGLVTQLKLTAIARQLA 418 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALE----RLASVTDRVQARPVPSAL 466 + A ++ + + A + RA ALE + R+ + + Sbjct: 419 ENCALERREEGIIYLQLAPSMANLHSKRAEERLQQALEEYYGEAIQLIIRIADSTLGTDT 478 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + K+E W+ ++ + A KAL + + L E Sbjct: 479 VASRRKQEDATWQ--QAAVESIQNDANIKALSETFNARLPLDSVRPLTKPKQE 529 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 2/165 (1%) Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + PK K L P + D W V+QL L + Q+A Sbjct: 359 PADGASSCQALTNPKPEKTGLASSDPPLAQETTSPPLSGNDHWPGLVTQLKLTAIARQLA 418 Query: 541 LNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP-AVRT 598 N E + + L L S +L+++ A+++L +AL G ++L I D+ T Sbjct: 419 ENCALERREEGIIYLQLAPSMANLHSKRAEERLQQALEEYYGEAIQLIIRIADSTLGTDT 478 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 R+ A ESI D NI+ L F+A L +S+RP+ Sbjct: 479 VASRRKQEDATWQQAAVESIQNDANIKALSETFNARLPLDSVRPL 523 >UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=Peptococcaceae RepID=A5D6B1_PELTS Length = 558 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 154/456 (33%), Positives = 240/456 (52%), Gaps = 2/456 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+TF +++GQEH+ L N + GR+ HAY+F G RG GKT+ A++LAK Sbjct: 1 MTYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PC C++CR + +G VD+IEIDAAS +++ RDL + +++APA GR+ Sbjct: 61 ALNCTGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDEVHML+ +FNALLKTLEEPP H +LATT+P ++P+TILSRC +F + + Sbjct: 121 RVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ + + E AL+L+ARAAEG LRDALS+ DQA A G +V+ V + Sbjct: 181 ADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ D + + R + L++E A G + E+ G L + + ++SP Sbjct: 241 LGTVRTDALDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYLRALLLEKISPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + RM A + + + +++ ++ + +E+ L++A Sbjct: 301 TPAGEAWGDTARMAAQAAEFSEAGLVRAVEIIARAEQDMKWSAMPGIVLELALVKACRPE 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 LP ++ P + P + A +A + P + V A L Sbjct: 361 AGWDLPSLAARVAGLEE--KIKLLAPAEAPVKRPPAAAKAASAPRQAAPAPVPVAVPALP 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 + Q PA A V A + + ++ Sbjct: 419 QKQVQEAGGPGGPAEAVSLEQVREAWEDLMNAMRKE 454 >UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Tax=Symbiobacterium thermophilum RepID=Q67TJ5_SYMTH Length = 570 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 164/452 (36%), Positives = 234/452 (51%), Gaps = 11/452 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++ L R++RPQ F +VVGQEH+ L N + GR+HHAYL SG RG GKT++AR+LAK Sbjct: 1 MAHLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G +DLIEIDAAS +++ RDL D V +AP ++ Sbjct: 61 AVNCLNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ QKLP+TILSRC F + L Sbjct: 121 KVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++I +L + ++ + P AL +AR A+G +RDALSL DQ +A +G+++ A Sbjct: 181 DEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAAEGEITLDMTLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT DQ L+L ++ + + ++E G + L+ + L L + +V+L Sbjct: 241 VLGTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKLEA 300 Query: 300 AALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + A +MR A + + L EL +P R+ VE+ L+R Sbjct: 301 GAQVLGLPAEALEQMRARAEPFAERQLIRAIRLLGQAETELRLSPSPRLLVEVALIRLTG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 E E + AP+ +PQ A Q T+ A Sbjct: 361 LFTGAAADEGEDDGTAAEAAAPSRRRRQEHGEVRPQGASQA---------TAPGPAGPGD 411 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERL 450 G S PA A E++ Sbjct: 412 PGEPAGGQATTPSAPAPVGAGVDRVVEAWEQV 443 >UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 Tax=Zymomonas mobilis RepID=C8WB95_ZYMMN Length = 628 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 193/647 (29%), Positives = 305/647 (47%), Gaps = 41/647 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F+D++GQ+ ++ L N ++ R+ HA+L +G RGVGKTS ARL+AK L Sbjct: 11 YRVLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKAL 70 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G+T PCG C+ CR I +GR +D++E+DAAS T V+D RD++++V+YA Sbjct: 71 NCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHTGVDDIRDIVESVRYASVS 130 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 RFKVY+IDEVHMLS+ +FNALLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 131 ARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVLSRCQRFDLRR 190 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + ++ E + E AL ++A+AAEGS+RD LS+ DQAIA G + V Sbjct: 191 ISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSILDQAIAHSSGSILAADV 250 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D SL+ ++E G+RV+ + G+E EALL +L L+H I ++ Sbjct: 251 REMLGLSDRGVIKSLLVDLLEGKGDRVLDHVKAQYDLGVEPEALLHGLLQLIHAITRSKM 310 Query: 298 S-PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L E+ + EL + + + +Q LL G E+ A EM LLR Sbjct: 311 GRPDNLTLHPTEEEIWLAELGKKLSFPVLHRLWQLLLKGHSEVQNAVLPLEAAEMALLRV 370 Query: 357 LAFHPRMPLPEPEVPR---QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + ++P P + + Q + + ++ P S + + + QV Sbjct: 371 IH-ASQLPDPATIIAQFKKQGSVSPSLSPSPEDNRLAPPTSSFQDREASDVKKNISEQVS 429 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 ++ Q + S+ T + ++ + + + + P + Sbjct: 430 PSQFQAKEALSKNGNDFSKSLQPTEKKYFSSFDDDNNSRMAASDYPVEGKQKFSELPENQ 489 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P +A K E + + A L Sbjct: 490 PRPSAIPIAP-------------ASEAKLKNPHFPPDFKSLTEMLFDNGHALLGHSLEDY 536 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 E + + L + ++ +Q+L+ AL L ++ ++D Sbjct: 537 GR--------LIEYNPPRLLL---ENHSRISGET-RQELSLALKNLTKQAWQVEFLQDRK 584 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEES 639 + +E +A I+ +Q + + F DAE + S Sbjct: 585 GQPS--FREAEIAQKEARQKA---ILNTPIVQAVLKTFPDAEWVQSS 626 >UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYL7_9GAMM Length = 697 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 209/513 (40%), Positives = 295/513 (57%), Gaps = 18/513 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQEHV AL N + R+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPKNFHELLGQEHVSKALINAIHNQRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+ PCGVC C+ I+ GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GR+KV Sbjct: 62 NCETGVTSEPCGVCGVCQSIDSGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPLPQVA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ILN+E I++E AL L+ +A+GS+RDALSLTDQAIA G+G V+ + + MLG Sbjct: 182 LAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSLTDQAIAFGNGNVTDEVIRQMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D ++++ + + N +++ I + ++ +A+ + LH++A++Q P Sbjct: 242 LIDQADVIAILANIYQQNTQQLTQSIQLLREQVVDAKAVFDRLAETLHQLAILQALPNFD 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 ++++LA+ +P +QLYY ++ R+ L A +EM LLR +AF P Sbjct: 302 LQINRQQSEQLQQLAQKLPAELLQLYYDIVVKSRENLALANTPMQALEMCLLRLMAFKPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 ++ P P+ QS Q+P + +TT + + Sbjct: 362 H--------------RNQISLRPPIANNPESQSLDSQSPDFKIVDTTPSEAIQGAKSSVL 407 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + SE +++ L + AS D +Q S + + Sbjct: 408 AEDSLQLTSE----QSDNNLSDDNLLKSASNVDSIQQIIEESIQQGTEQQAFDDSHLIAI 463 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 ++ + +L + Sbjct: 464 DEAAVNTPTQQTPTIEDDAVANRLSDLQPSDSH 496 >UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 Tax=Chloroflexus RepID=B8G7M2_CHLAD Length = 613 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 185/649 (28%), Positives = 291/649 (44%), Gaps = 47/649 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L RKWR QTFA++VGQEHV+ L N ++ R+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MAVQSLYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC +A PCG C+ C I +GR VD+IE+DAAS T VED R++++ VQ+ P+ R Sbjct: 61 AVNCLHPDPSARPCGTCEMCTAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPSVAR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDE HMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 MKVYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V + + I E I A + +ARAA GS+RDAL + +Q + +G ++ Q V + Sbjct: 181 VTSMAAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFVEGPITLQHVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +L+EA++ A+ + +N A +G + +++ L + ++ + Sbjct: 241 LLGMTAAAEVDALIEALLSADLTAALRAVNAVANQGADLRQFARDVVERLRAVMLLNATG 300 Query: 300 AALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 D+ E ++ + A+ + + + +L P + +E+ ++ AL Sbjct: 301 DRTLLDLGDDEVAQLMQWAQRAEMAALVQWVKLFSGLDYQLRTTPYGHLPLEVAVVEAL- 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P PQ P+VP TTS Q Sbjct: 360 --------------------VAPVPVVQPVTPHPHAVRPQSRPSVPASPTTSSARPNIDQ 399 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 A PA + PV + S + + P E+ Sbjct: 400 SMAFTVA-------PALTQPSAPVKPSRATPPPSTEPPTSSPLPATPPVAPPTTPESGVA 452 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 P V A + + +++ A+L+ W + Q Sbjct: 453 PTADPPPPPPAVWAAVQQSRPPVDYPAARAADAELSLLERLEATWEDFKRDVRPRSPTVQ 512 Query: 539 VALNAWK--EESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LN+ + + N + L + S+ L + + E L G T + ++ Sbjct: 513 ALLNSARPYDVEGNTIILLVTSTFHKERLEEPKNRAIIEEVLRRRFGKTYAVRCTIEEKS 572 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P++ R I E + D ++ FDA + I P+ Sbjct: 573 TE--PIDLRAKIREAR---------KDELVRAALNIFDAHIV--GIEPL 608 >UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V121_9FIRM Length = 615 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 174/639 (27%), Positives = 283/639 (44%), Gaps = 28/639 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ FAD+VGQEH+ L+ ++ G+I HAYLF+G RG GKTS A++LA+ Sbjct: 1 MAYVALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPCG CD+CR I G +D+ EIDAAS +++ RDL ++V++AP G + Sbjct: 61 ALNCAEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML+ +FNALLKTLEEPPE V F+LATT+P K+P TI SRC ++ + V Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L ++ E I E AL ++A A+G +RDALS+ DQ A +G ++ + V Sbjct: 181 TEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + E + + ++ +++ G E +LVE+ + + + Sbjct: 241 LGLVGRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLMIAGVGGT 300 Query: 301 ALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++ A ++R A +I + L ++L +P R+ E L+ Sbjct: 301 ISAAELCAGDAEQLRADAAQFSEDEIMTILRRLNETMQDLRTSPQPRIAAETLLIELCHA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P A A A + + + +A A +V P + + + Sbjct: 361 DGAAVSVGAAAPHPGSADAAHIARL---EAQVEELAARLAAGSVSAPISAAGGVPPAPTP 417 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + A + AS +V A P L+ + R K Sbjct: 418 RPRTAKADST-----------TAPKTASKSAASSAAKVAADGAPRQLDMKVWQSFQVRLK 466 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + A + + + + A+ R + ++ L+ L Sbjct: 467 ERNRLAASLLSGAAYEGMTETHFFIRPSSDMARDYIAKRHRAVFDEVMTALAGRPL---- 522 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + + + L E G+ I E +PA Sbjct: 523 ---SVVCTGGEEDAVPAPPIKASPDYPAPVAALLEVAGD--GA----RIEEVTSPAPPRA 573 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 E + A ++K A+ + + FD EL + Sbjct: 574 AEKKPAPPQQKQAEEDDCETYEPTPDEEAEMFDDELPPD 612 >UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCQ4_PLALI Length = 682 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 173/598 (28%), Positives = 269/598 (44%), Gaps = 43/598 (7%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLAR++RPQTF++VVGQ+ + L N + GR+ HAYLF+G RGVGKTS+AR+ AK Sbjct: 5 NYTVLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKA 64 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + A PC C+ CR + G+ VD+ EID AS ++D R L NV R R+K Sbjct: 65 LNCPNAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSMRTRYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP+ VKF+ TT+P KLP TILSRC +F +++E Sbjct: 125 VYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGTVNIE 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I N E + A++L++R A GS+RD+ SL DQ +A G V+ V +L Sbjct: 185 SIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADVHRLL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--P 299 GT DD+ + LV+A+++ + R + +++A G++ +AL +++ L + + Sbjct: 245 GTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDLMVTAAGVKG 304 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + R+ A I Q L + ++ A R E+ L+R Sbjct: 305 IALLGATESSRSRVETQAEAWGLKTISAALQILAEAKIKMARATWGRALTELALVRITLL 364 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 L E Q P ++ P +S + Sbjct: 365 EDLSRLDELIARFQG---------------KSIPATSSSGRLATDRPMNSSPRVLPP--- 406 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 P A + P + + S + A Sbjct: 407 -------------PVAIIQGSPESRDLPDVQESQPEFQSQTEPQHHQHATANTSNATVVP 453 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 ++ + A ++ +L PEL + EA + + L + Q Sbjct: 454 VSSDATVSVDSSAEASSISTSL---AEPELVFQPGNEATLLE--YLRTKNTDLTGIHLQR 508 Query: 540 ALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 A + + + + + Q+ L KL + L G+++ L Sbjct: 509 ATHCQIT-GPTQLEIVISANHRFEQQCLEQPNIVSKLEQQLRTATGTSIRLRFTTGSA 565 >UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 Tax=Lactobacillales RepID=A5VIC2_LACRD Length = 611 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 135/445 (30%), Positives = 224/445 (50%), Gaps = 1/445 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQ+ V L N + +I HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RD+ D +YAP + + Sbjct: 61 AVNCHHSKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P+TI+SR +F + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E +++++IL+++ + ++ +AL ++A AAEG +RDALS+ DQ ++ D +V + Sbjct: 181 EDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + G + + + G + + + +++ + I + Q SP+ Sbjct: 241 TGSVTKQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPS 300 Query: 301 AL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + E+ + + L ++E+ + + +E+ ++ Sbjct: 301 LISVESTGLKQEDFEEIVQLASSATLYRMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQI 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ L A + Q Q Q +Q P+ + +Q Sbjct: 361 EPQKNLQSAPAVSADTNAEATKTIEKLQQEIQQLQQTVKQLQNTPVRASRPSPRQQNEQP 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNN 444 + Q + ++ + Sbjct: 421 RVQQKKVQVNLNKIYPVLENATRQD 445 >UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcineae RepID=C7NGE4_KYTSD Length = 796 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 165/619 (26%), Positives = 272/619 (43%), Gaps = 30/619 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RPQ F++VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T +PCG CD+C+++ +G VD+IEIDAAS V+D RDL + + PA+ Sbjct: 60 CLNCEQGPTDSPCGECDSCQDLARGGAGSVDVIEIDAASHGGVDDARDLREKASFGPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++ FNALLK +EEPPEHV F+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 ++ L + E I EP L + RA GS+RD++S+ DQ IA D ++ Sbjct: 180 PPAVLQEYLAQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLIAGSDDAGITLAGT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +V+A +G + + G + + ++ + + +V Sbjct: 240 TALLGFTDSELLDGVVDAYAAGDGASLFTTVERVVESGQDPRRFVEDLSERMRDLILVNA 299 Query: 298 SPAALGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P + R+R A + P ++ L G E+ A R+ +E+ + Sbjct: 300 VPTGTEAVLPGVPSDQLDRLRVQASGLGPAELSRASDVLFHGLAEMTGATSPRLQLEIIM 359 Query: 354 LRALA--------FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 R L F R+ E + + A TA + ++ Sbjct: 360 ARLLLPRAAGEGGFAARLEKVERWMAFRGDASAGGTAGAQAGAPAQEAPASQGSPVAQSA 419 Query: 406 PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA 465 P + ++Q + + A + + + +P + A P P+A Sbjct: 420 PAVPAAAAPQQEQSRAQEPARRDQTPRDEQREQEQPARQDRTPQGEERAQEQPAAPQPAA 479 Query: 466 LEKAPAKKEAYR---------WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 + P E A + + E + A Sbjct: 480 EQAPPVPDEPPADMWEAEEAAAAAGPDSAGDRTPEPGAPQQAQQAAPEGSSSPGAAPVPL 539 Query: 517 AIERDPWAAQVSQLS-LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQ----QK 571 R W + +L + ++ + + + + ++ L L + + R ++ + Sbjct: 540 ETLRHEWPTVLDKLKDISRVTWALVSQSMQVQDLSSEGLTLATEVAPIAERFSRGENADR 599 Query: 572 LAEALSMLKGSTVELTIVE 590 +A A+ G + V Sbjct: 600 VAAAVQEALGFHPRVRCVV 618 >UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYL6_9BACT Length = 598 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 181/624 (29%), Positives = 277/624 (44%), Gaps = 39/624 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q H++T L N ++ R+ AYLF G RG GKTS AR+ AK LNC T PCGVCD C+ Sbjct: 6 QAHIVTTLKNAIAQNRLAQAYLFVGPRGTGKTSTARIFAKALNCVHAPTTNPCGVCDMCK 65 Query: 81 EIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 EI G ++++E DAAS T+V+ R+++ DNV+YAP RG +K+Y++DEVHMLS SFNAL Sbjct: 66 EIAAGNSLNVLEFDAASNTQVDKIREIIIDNVKYAPTRGNYKLYIVDEVHMLSNSSFNAL 125 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEPP HVKF+ ATTD QK+P TI+SRC +F L+ + +I L I +E I Sbjct: 126 LKTLEEPPPHVKFVFATTDVQKVPTTIISRCQRFDLRRIPTPEIAQHLLFIAGKEAIELT 185 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P A + +AR AEG LRDA S+ DQ +A ++ Q V + G L E ++ Sbjct: 186 PTAAESIARGAEGGLRDAESMLDQLVAFCGDKIDEQNVLNIFGFTARQTVAELCEHLING 245 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM-AAIELRMRELAR 318 + + I + + G + L+ +++ L + + Q +P L D+ A + A Sbjct: 246 HTGAALGAIQKQSDAGKDLSRLMADLIEHLRNLLVAQSAPETLHEDLSAEAIAELTAQAG 305 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE-----PEVPRQ 373 I + + + +A +++M E+ +RA+ + L E + Sbjct: 306 RIAADKLLNLIEQFADAESRMKWAANKKMHFEIAAIRAVQTLGQASLTEVLDTLTAIRGG 365 Query: 374 SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEP 433 P P + + P + + P P ++ +A V +A S P Sbjct: 366 GAMPERPVKKVEAPKTPVAAVAEKKTERPKPAPVSSPAPVAEPAAPVSVPAPAEAPASRP 425 Query: 434 AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 + + + ++ + AP + V + Sbjct: 426 SLSAFVAASIGGSEKKTPAA---------------APKPDPKVSAEPAHKVEAKPAATVA 470 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 P A + E P+L ++ + W V L + VAL ++ +D Sbjct: 471 PSANAQ----ELWPQLVTRVRKDRPLISDW---VESGQLTDVSSGVALLSFPPSAD---- 519 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQ 613 R + NNRG +KL L+ L G+ V L V R+ E Sbjct: 520 -LARDTCERPNNRGFLEKL---LTELTGAPVTLKTETRAGLVVEKLA--REEAKPEPKVD 573 Query: 614 ARESIIADNNIQTLRRFFDAELDE 637 E+ D IQ F AE+ Sbjct: 574 PMEAFKNDPLIQKALAEFKAEILP 597 >UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus RepID=A8W2Q1_9BACI Length = 600 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 160/447 (35%), Positives = 241/447 (53%), Gaps = 3/447 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WRPQ DVVGQEH+ L N L ++ HAYLFSG RG GKTS A+++AK Sbjct: 1 MAYQALYRVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C I+ G VD+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEQAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFAPSGASY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++E I+ + +A +P AL ++ARA+EG +RDALSL DQAI+ D V+ V ++ Sbjct: 181 HTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADTSVTLDDVLSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D ++EA+++ + I+ + G + + + + L + MVQ +PA Sbjct: 241 IGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFMEDFIFLTRDLLMVQAAPA 300 Query: 301 ALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + D + R LA + + + L ++++ +A + +EM +++A Sbjct: 301 LDESGDRKLGDQRFEILASKASQSWLFALMEKLNHFQQQMKWASHPAVFLEMFVVQACQM 360 Query: 360 HPRMPLPE--PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R P PE RQ + + ++ P AP P P + Q +Q Sbjct: 361 PSREPEKAGLPEEVRQQISTLEHKLADLERRLQQAPSQAPAGRPDQPASPSQPQAPVRKQ 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNN 444 GA++A + Sbjct: 421 PQAASTGASRANMQRVKGVLNEATKAH 447 >UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUL1_HALO1 Length = 649 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 185/649 (28%), Positives = 275/649 (42%), Gaps = 28/649 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP TF++VVGQEHV LAN + R+HHA+LF G RGVGKT+ AR+L K Sbjct: 1 MSYVVLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVHHAFLFCGPRGVGKTTAARILGK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C I G VD E+D AS ++ R+L + V+Y PA R Sbjct: 61 ALNCERGPTAEPCGSCVACETITNGTAVDYFEMDGASNRGIDAIRELTEAVRYQPAVLRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TILSRC ++ K + Sbjct: 121 KVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTILSRCQRYDFKLVPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++ L I E I + A+ L+ R + GS+RD+LSL DQ I+ G + V+ Sbjct: 181 PKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYVGTSNIGESDVAE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +LV A+ E + + + + A ARG++ L ++ L +A++Q++P Sbjct: 241 VLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARAIVRYLRDLAVMQVAP 300 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A L + +RE A + + + ++ +L R+ +++ L+ Sbjct: 301 EAEGLIDGSEEEAAELREHAGRLSRERVTQMFDRMVQACNDLADTQMPRLVLDLALIDVA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A P +PL + + + + P Sbjct: 361 ALEPVLPLGDLIDRLGALERRLGGGGGRGGPGGGGRGGPSRSPASAASPGGQRGNARNPG 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + G + P A R Q P + P E + Sbjct: 421 AARMSAGDLDPELVPPPPPGVAVAPQQQQPPSQPPPPSRPQQPPARAQATPPPPPAEDF- 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK--L 535 + A P A A AA A E+ W + L L Sbjct: 480 ---------DRPPPAEPPAAPPAGRASAPAAAAAPNAGESDMMAAWEQMLPALGETHRSL 530 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLN----NRGAQQKLAEALSMLKGSTVELTIVE- 590 + N + L + + L G V+L + Sbjct: 531 AGFYEHAKILSAAANRIEAGFAPEMSALAELAMEPESMAAMRSFLHGYFGRPVDLAVRVL 590 Query: 591 --DDNPAVRTPLEW-----RQAIYEEKLAQARESIIADNNIQTLRRFFD 632 + ++P R+ E+K + E+ A + + F Sbjct: 591 SAAEAEKNQSPARSVFDLNRERAEEDKRQRELEA-RAHPIYKKVLSTFG 638 >UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Tax=Cyanobacteria RepID=Q8DJU0_THEEB Length = 603 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 155/458 (33%), Positives = 233/458 (50%), Gaps = 12/458 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F+D+VGQ + T L L RI AYLF G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAK 60 Query: 61 GLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T PCG C+ CR++ G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + ++ L++I ++E I EP AL L+A+ ++G LRDA SL DQ +++ + V Sbjct: 181 PLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLY-PERITVEQVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + G + + L+ A+ + V+ + RG + +L + L + + + Sbjct: 240 QLTGAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTV 299 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L A + LA +I + L ++ + R+ +E+++L Sbjct: 300 PQRRDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + P P +P P T T +V A P PLP+ S + Sbjct: 360 MTERVAQPPPPAVMPAARPQPTTMTPPRTEAEV------AVAAKPAEPLPQ-DSALSVNH 412 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVT 454 +Q A P V AL+ L + Sbjct: 413 PHIQATAAAAPEPALFPEPVANPEQVWQQALQVLQQMQ 450 Score = 55.4 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 48/362 (13%), Positives = 106/362 (29%), Gaps = 29/362 (8%) Query: 253 VEAMVEANG----ERVMALINEAAARGI-EWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 ++ + + + L+ + + G+ + E+LL ++ RI + Q+ Sbjct: 189 LQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLTGAVPEQ 248 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR-ALAFHPRMPLP 366 + + +AR + ++ Q L GR D +T+L+ + + + L Sbjct: 249 DLRQLLGAIARRDAVSVLEHTRQLLERGR-------DP-----LTILQNLASLYRDLLLA 296 Query: 367 EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGAT 426 + R+ + + L Q+ + Q ++ + Sbjct: 297 KTVPQRRDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISI 356 Query: 427 KAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQ 486 +E A V AA + ++T V A + A + P +Q Sbjct: 357 LGLMTERVAQPPPPAVMPAARPQPTTMTPPRTEAEVAVAAKPAEPLPQDSALSVNHPHIQ 416 Query: 487 QKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE 546 A AL L + Q+ + + Sbjct: 417 ATAAAAPEPALFPEPVANPEQVWQQAL-----------QVLQQMQMSTYALLSQHAHLRH 465 Query: 547 ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D V + + + + K+ A S + G ++ + PA TP + Sbjct: 466 LGDREVRIGIVNQTLLNLTKNNHAKIEAAFSQVLGRPTKVALEVAPLPAKTTPTPKAKEP 525 Query: 607 YE 608 + Sbjct: 526 PQ 527 >UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QAW7_PSYCK Length = 685 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 208/432 (48%), Positives = 278/432 (64%), Gaps = 2/432 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L+K L Sbjct: 5 YQVLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+TGIT+TPCGVCDNC I+QGRF+DLIEIDAASRTKVEDTR+LLDNV YAP++GR+KV Sbjct: 65 NCDTGITSTPCGVCDNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPYAPSQGRYKV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 125 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRCLQFVLRPLSQSL 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ++L +E + + AL LA AA+GS+RDALSLTDQAIA G G + V++MLG Sbjct: 185 LSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGALDDVTVNSMLG 244 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D +SL+ + + V A I + A+ ++ ++ + LLH++A+ QL P Sbjct: 245 LIDAADLVSLITDIYNHDKPAVAAHIEQMRAQMVDASSMFDGLAELLHQLALCQLLPEVA 304 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 N A + +LA+ + P +QLYY+ ++ R+ + A +EM +LR LAF P Sbjct: 305 LNVNEAQAQHIDQLAQHMSPDVLQLYYEIVVQAREGVKLASTPMQALEMCILRLLAFRPL 364 Query: 363 MPLP--EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A PT ++ + +P S+ + T + + Q Sbjct: 365 PVDEILANVLDSTVMAIEKPTTTVSSATLITEPVSSSLELQTQSDNIVYENIDTSVNDKQ 424 Query: 421 RVQGATKAKKSE 432 V + E Sbjct: 425 DVGADNSITQHE 436 >UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 Tax=Aeromonas RepID=A4SMN2_AERS4 Length = 865 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 272/551 (49%), Positives = 342/551 (62%), Gaps = 12/551 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVLTAL N L GR+HHAYL SGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++ PCGVCD CREI+QG FVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP +VKFLLATTDPQKLP+TILSRCLQFHLK+LD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QLE +L++E EPRAL LA+AA+GS+RDALSLTDQA+A G+G V ++V AM Sbjct: 181 TQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRLESVLAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+EA++ + MA I E A G +++ L E+ GLLHR+AM QL PA Sbjct: 241 LGTLDHRHLHQLLEAILRQDAAATMAKITEIATLGPDFDQLHAELEGLLHRVAMAQLLPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A + +LA+ + P ++QL YQ +L GRK+LP+APD R +EMT LR LAF Sbjct: 301 TVQEQGADA-ESLLQLAQAMSPEEVQLCYQIVLGGRKDLPWAPDGRTSLEMTCLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PR E + V P ++ V P + A + P T A Sbjct: 360 PR-----REAVHPANLTVLPPSMAGGMGVAPAQLGKSRGADSAPTLATAIVAPPAAPGSV 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE---KAPAKKEAYR 477 V+ A A A + L++ Q + A + +A +A Sbjct: 415 SVEHTATQMVPLVAHAVLETDEQEMASDALSAPLFVEQDELLREAQQMGYEAQPVMDAPS 474 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA-IERDPWAAQVSQLSLPKLV 536 +T V + + P + A E+ E+ A++ AE+ +E + + S + Sbjct: 475 APISTVVAADEAMQHLPSDMAVA--AEQPTEVPAEIVAESVVEPEAAPSAASSMQSLLGK 532 Query: 537 EQVALNAWKEE 547 + + + E Sbjct: 533 RNLLRSRLRSE 543 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 4/244 (1%) Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 + + A V +A ++ R P + + + R Q Sbjct: 622 SAASASMANVAQTAASGASAVPAYGQAAPAQAPTRARPNPDDLPPWDLDGTPAARAQ--V 679 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER- 520 P+ AP +A P++ L+ + E+ E+A + + + Sbjct: 680 APAVSSAAPVMPQAVATSEPAPMVDSVMETIDWDELESDNQPEEGEEVARLIPSSLLVNC 739 Query: 521 -DPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML 579 DPWA +++ + + Q+A+N+ + V L L+ QRHL + A+ LAE + Sbjct: 740 DDPWAELIARTGVGGRLRQLAINSVMTRQGDKVLLTLKPEQRHLVSDRARVDLAEIIGPE 799 Query: 580 KGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 G V++ + P TPLE +Y Q + D N+Q LR+ F A L +ES Sbjct: 800 LGQAVQVEVTLGTVPDQETPLEIEHRLYLGVREQVSRDLEQDPNVQFLRQRFGAVLHQES 859 Query: 640 IRPI 643 I P+ Sbjct: 860 IEPL 863 >UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfovibrio RepID=B8DQU3_DESVM Length = 688 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 180/702 (25%), Positives = 277/702 (39%), Gaps = 79/702 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RPQTFA+V GQE V L+ + R+ AYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSNAPLTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE T PC C+ CR++ G VD++EID AS +ED R L + + YAP GR+ Sbjct: 61 ALNCEKAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F K L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E +P A++L+AR A GS+RD++SL Q +A G +++ + + Sbjct: 181 NELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +++A+ + V A++ + +G++ L E+ + M++ + Sbjct: 241 LGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGE 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD------------- 344 A + + E A T I +Q L G++ + + + Sbjct: 301 AALPALDLPEEEARQWLEWAPKFEITHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360 Query: 345 --RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVA-------------------PTAV 383 R+ ++L + P +P P Sbjct: 361 MLPRL---VSLEQLSRGGGAGPAGGRGMPGGVGGVGGGPAGGSGMPGGGAGGHGSMPPRQ 417 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKS------------ 431 Q + Q ++ A+ R G + + Sbjct: 418 GGYGGYGAQSGQSGQPGQFGQSGQSGESFPQAQPPQGRYPGPGQVRPQAASSASSMSSSS 477 Query: 432 ----EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQ 487 P A+ + P + Sbjct: 478 GVPGAPGMQPAGGFPRPERAAPAAAPAPSRGGSDTSLPWDDVPYPAPGGAAFGDAAIGGT 537 Query: 488 KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS----QLSLPKLVEQVALNA 543 V P ++ A + T L A A E W V + + A Sbjct: 538 SSVPGAPDSVASASDTPDT--LGAPDAPAPHEDGTWVGFVQYCVERNGEGGSSLSMLRQA 595 Query: 544 WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 +D + + RSS L+ G + L G+ V + + ++TP E Sbjct: 596 QGHCADGRLTVSTRSSTLYNQLSVPGNEALLVARARAYFGTDVRVEV-LPPTTRIKTPSE 654 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 R + LR F A + S RP+ Sbjct: 655 LRAEA------------ERHPAVSLLREQFGATML--SCRPL 682 >UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Bacteroidales RepID=A6LDQ5_PARD8 Length = 586 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 157/643 (24%), Positives = 273/643 (42%), Gaps = 67/643 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ+ + T L N + ++ HAYLF G RGVGKTS AR+ AK Sbjct: 3 NYIVSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS V+D R L+D V+ P G++ Sbjct: 63 INCLNPTADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHML+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + + Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+++ ++E + EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ QAV Sbjct: 183 ADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A++ N + ++NE +G + + ++ + G + + + Sbjct: 243 LNVLDYEYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCRDEST 302 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A+I R +E+A+ P + + + ++R+ +E+TL++ Sbjct: 303 LVLFEVGASIRERYKEMAKHCPDQLLFKAIELANTCDLNYRASRNKRLLLELTLIQLCQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + A P++ + P QP AP P+ S + Sbjct: 363 TQVAVDDKKKALIEPIAGTNPSSQAVNSGQPQQPPQAPSVTAAAGAPQVMSTHM------ 416 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++ ++ + + P + E + + Sbjct: 417 ----------------------PSSVPAPPPSTAPNPARKTARPMGISMKEIGVEKPKQQ 454 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + V TP W + + ++ Sbjct: 455 TVQQATTNVKEVVTP-------------------FDNDSLVREWDNYAATIDKKVYLKNT 495 Query: 540 ALNAWKEESDN---AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS---TVELTIVEDDN 593 +N +N V +H Q L N + L + + + IVE + Sbjct: 496 MINCKPTLQENYYFEVAVHNPGQQEELINNAI--HILPFLRQHLNNSRIQMRVRIVEGNE 553 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + + + + LR F+ LD Sbjct: 554 ----------KHLAYTSTEKLELLMKINPTLGRLRDEFNLTLD 586 >UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N205_9FIRM Length = 640 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 156/592 (26%), Positives = 271/592 (45%), Gaps = 22/592 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RPQTF +V GQEH++T L N + RI HAYLF+G RG GKT++A+LLAK Sbjct: 1 MSYKALYRSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ I G D+IEIDAAS V++ RDL+D V+YAP G++ Sbjct: 61 ALNC--TGENPPCDQCPNCKAITVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPINGKY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP H+ F+LATT+P K+ TI+SRC +F K ++ Sbjct: 119 KVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKKVEN 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE++L E+ +E AL+ +A+ AEG +RDALS+ +Q +A + +++ ++V+ + Sbjct: 179 HDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAY-NNELTVESVNMV 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L D +S ++ ++ + + V+ ++ + I+ + L +++ +L I + + + Sbjct: 238 YGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRLTFDLVDVLKDIIIYKNT-Q 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + LA I + L+ + D E+ +L+ Sbjct: 297 DVSILFVLTQQDVDNLAPYILVEEAFEIIDILIEASSHYSQSLDANTYFELAMLKICN-- 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS-APQQAPTVPLPETTSQVLAARQQL 419 + +A QV P + P V ++ + + + + Sbjct: 355 ----------RIKEENKLAIDNSKAIEQVNILPVKDTAKAIPVVEETDSLPEEVIEDEII 404 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + + + A + +V A + Sbjct: 405 EEELNKGVIEYDPEIEESIPEELKAKADDITETVVPEEVAEGTLETVISNSDVSLPVGED 464 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS---QLSLPKLV 536 + + + V +P+ ++ + + A ++ W L+ K Sbjct: 465 ISQEIDENIIVNKSPENIEVSFSDILNILVQADRRVLNDIKEKWTVIARYRFNLNTAKFA 524 Query: 537 EQVALNAWKEESDNAVCLHLR--SSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + + + + + +N +L L + G + Sbjct: 525 SMLCDGKPVAAAPGGIIVAFEHQPNVNEVNETQNYYQLKNFLKEVLGENYDF 576 >UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LV54_9FIRM Length = 691 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 152/358 (42%), Positives = 209/358 (58%), Gaps = 1/358 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP +F D+VGQ V L++ +S GRI HAYLFSG RG GKTS A++LAK Sbjct: 28 MAYIALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVC NC +I G +D+ EIDAAS +++ RDL + V++ PA GR+ Sbjct: 88 SLNCEKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TI SRC +F + + V Sbjct: 148 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITV 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L ++ E I E AL+L+AR A+G +RDALSL DQ + ++ V Sbjct: 208 EEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEEN 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ E V+ I E A G + LL E+ L + + + + A Sbjct: 268 LGLIGHEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAELTIHLRSLMIYEAAGA 327 Query: 301 ALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++A + E I L EL + P R+ +E+ LL Sbjct: 328 LAALNLADDTGAALEEQKALFTQAQIMAMIARLHEAMAELRWTPQPRITLEVALLSLC 385 >UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0B1_9SPHI Length = 575 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 215/448 (47%), Gaps = 3/448 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ H+ T L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T CG C++C + +++ E+DAAS V+D R+L+D V+Y P G+ Sbjct: 63 INCLTPTEDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQSGKR 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPPE+V F+LATT+ K+ TILSRC F K ++V Sbjct: 123 KVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRIEV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + + L +I +E I E AL L+A+ A+G LRDALSL D D ++ Q+V Sbjct: 183 KDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSADRHITYQSVVK 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D + +A++ + V+ +E +G + + + L + M + Sbjct: 243 NLHILDHDYYFKITDALLAQDMPLVLLYFDEILRKGFDGHIFIAGLGAHLRNVMMCKDPA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L ++ R E A+ + + + + R VE+ L++ Sbjct: 303 TVKLLEVSEKVKQRFAEQAQNASASFLLSALNLANDCDLHYKSSKNPRFFVELVLMKMAN 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + V P P T V Q S QQ P + + Sbjct: 363 LNRVIDWAQNPVEIAGQPPADPEKKKPETNVAEQNNSHQQQQAPPPAKMSLEYTKKENPK 422 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAA 446 + + + +N Sbjct: 423 TPVIPNKPDVTLKVDTSNGSVQASDNTP 450 >UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR83_9FIRM Length = 638 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 180/594 (30%), Positives = 268/594 (45%), Gaps = 39/594 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRP TF +++GQ+H+ + R+ HAYLFSG RG GKTS+AR+LAK Sbjct: 1 MAYLSLYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I G +D+ EID AS V++ R L ++V+ P G Sbjct: 61 AVNCLDLKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+P+TILSRC ++ + V Sbjct: 121 KVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYEFHRISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSA 239 I+ L HI E H++ P A L+A AEG LRDALSL DQ AS ++S + V Sbjct: 181 NDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAGNELSAEIVYD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +Q + L +V + L + G E A+L ++L I + +++P Sbjct: 241 LLGLTDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSIMICKVNP 300 Query: 300 AAL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + +++ A+ + + + +L E + RM EM LLR Sbjct: 301 NAPELSAYGNKISVIQKDAQELSDAYLDALFDSLHHSFSEANRSSSPRMSAEMGLLRLCR 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L E + +V+ + PQ ++ P LP T S L Sbjct: 361 LRGSQALDSLEERITALE--KNVSVLMKSSTLPQTETIPAAPSPAILPPTISIPLVTPTA 418 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 L A+ + D + P +K P K E Sbjct: 419 LTPAPAAS-----------------------TTTCPDSPKEVVPPPPADKTPVKMEPAT- 454 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL--- 535 + + PK + + E + E+ L + D WA ++ + Sbjct: 455 ------KSKPSLPCKPKKSPEEKKAETSHEIGETLLDPSTYNDIWAKVLAFFEINHRIDI 508 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHL--NNRGAQQKLAEALSMLKGSTVELT 587 + + ++ S + L NN+G Q + +A G VE Sbjct: 509 LYCLQKSSLILLSKSRAIAVASQPYLVLAGNNKGYQNTIKDAFINAIGIPVEFH 562 >UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5D8_LARHH Length = 769 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 231/561 (41%), Positives = 309/561 (55%), Gaps = 6/561 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPRRFADLVGQEHVVRALSNALAGQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++++N QYAP GR+ Sbjct: 61 SLNCERGVGAEPCGECAACRQIDAGRFVDLLEIDAASNTGIDNIREVIENAQYAPTAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFALRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I E AL LLARAA GS+RDALSL DQAIA G+G V V AM Sbjct: 181 QQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLLDQAIAYGEGVVREDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+ A+ + +G V+ E AARGI ++A L E+ L ++IA++Q P Sbjct: 241 LGAVDRRYLFTLLAALADGDGAAVLDEARELAARGIGFDAALEELAQLFYQIALMQAVPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D + LA ++ P D+QLYYQ + G ++LP APD ++G M LLR LAFH Sbjct: 301 AIADDEPE-REALAALAGSMAPEDVQLYYQMAVQGGRDLPLAPDEQLGFNMALLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ P P +A +AP T + S AAR + Sbjct: 360 PQTGSPALAAPAAVAGGIASPPQAPAGMTAGARPAAPAGTATDDDDDPASGRGAARAAIA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + ++ A A + S P + + A Sbjct: 420 KALRRSPVERPVVATRQAV-----PADTPVESGLPATTGTSRPGDTGQPASVPAGTTAPA 474 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P + P + P A A P Sbjct: 475 PVPASASGLDSSLPWDDEVHDSLSAAPVEAVPAAGLGQASLPHEDAYDCPEREPAASTPE 534 Query: 541 LNAWKEESDNAVCLHLRSSQR 561 + A + AV L ++ Sbjct: 535 VPAGASPAGEAVRLASGPAEA 555 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 10/250 (4%) Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 P++ P PE + A + ++ G A + + A+ D Sbjct: 524 PEREPAASTPEVPAGASPAGEAVRLASG------PAEALPWDDETAHGLNADEQAAHDDM 577 Query: 457 VQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 A P+++ + + + TP + P A+ E + + +A Sbjct: 578 FGAPAEPASVPVSSSGQAVTTAPDVTPPADVRAPDVMPDAVAVPAESAEALAASGPVATG 637 Query: 517 AIERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVC-LHLRSSQRHLNNRGAQQKLA 573 W A V L L +A NA + + L L + R + + LA Sbjct: 638 TGLTGDWIALVDTLKDSLGAKARLLAQNAELVAREGELVRLRLPGAHRFVAGADYRSALA 697 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDA 633 +AL+ G V + + D T L R + EKL AR +I D + L+R F A Sbjct: 698 DALATHWGQPVRIEVEIGDV-VGETHLMQRARVQGEKLELARSAIEQDPRVAELKREFGA 756 Query: 634 ELDEESIRPI 643 + ESI+P+ Sbjct: 757 VVVPESIQPL 766 >UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Coxiella burnetii RepID=B6J935_COXB1 Length = 509 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 229/505 (45%), Positives = 312/505 (61%), Gaps = 4/505 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++QVLARKWRP+ F +V+GQ V+ AL+N L +HHAYLF+GTRGVGKT+I+R+LAK Sbjct: 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PC C+NCREI++GRF DL E+DAASRTKVEDTR+LLDN+ YAP +GRF Sbjct: 61 CLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKF+LATTD KLPVT+LSRCLQFHL L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +H+L EE++ E AL LLARAA GS+RDALSL DQ+IA G+G+V V M Sbjct: 181 LQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ ++EA+ G+R++ + +G+++ L ++L LLH+IA++Q P Sbjct: 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + + ++R+LA+ + D+QL+YQ LIG+++L Y+P + G EMTLLR LAF+ Sbjct: 301 ALIENDS---EQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFY 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P PE + A V PT + T P T+ L + S +L Sbjct: 358 PSAANAIPETESKE-AVVTPTPKSSETSWPQLLSQLKLTGATLALAQQCSLKELTDNRLY 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + R V + R +V + + A K + + +A Sbjct: 417 LMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDISNHQTETPAALAQKKAQDRQTEA 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEK 505 +M ++V + L E Sbjct: 477 EKRMMNDRQVQRIMQTFDATLVKES 501 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 4/150 (2%) Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAV 552 P A E E + + W +SQL L +A KE +DN + Sbjct: 358 PSAANAIPETESKEAVVTPTPKSSET--SWPQLLSQLKLTGATLALAQQCSLKELTDNRL 415 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 L L Q+ L + ++++E LS T+ + I N TP Q +++ Sbjct: 416 YLMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDIS-NHQTETPAALAQKKAQDRQT 474 Query: 613 QARESIIADNNIQTLRRFFDAELDEESIRP 642 +A + ++ D +Q + + FDA L +ESI P Sbjct: 475 EAEKRMMNDRQVQRIMQTFDATLVKESIVP 504 >UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsiella grylli RepID=A8PNF7_9COXI Length = 523 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 211/531 (39%), Positives = 303/531 (57%), Gaps = 18/531 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ+F +++GQE L N L RIHHAYLF+GTRGVGKT++ARLLAK Sbjct: 1 MSYQVLARKYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+T IT PC C +C+ I RF DLIE+DAASRTKVEDTRDLL +V Y P++GR+ Sbjct: 61 CLNCQTQITPEPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HV FLLATTD Q+LP TILSRCLQFHLK + Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCLQFHLKTITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +IL +E I EP AL LA+AA+GSLRDALSL DQAIA + ++ Q ++ + Sbjct: 181 VQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQAIAYTNQNLTKQDINTL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L++A++ + ++ +L+ + + G+++ ++ E+L LH++A+ Q Sbjct: 241 LGHVAHSEIIQLLDALILEDTAKLWSLVEQFSELGVDFSCVMDELLTCLHQMALSQRFKT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + A+T+ P IQLYYQ +L R+++ AP R+G EM LLR LAF Sbjct: 301 EVN-----YTQTIIDFAQTLSPEAIQLYYQIVLFSRRDITLAPTPRLGFEMMLLRLLAFK 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E + P + P+ Q + + L + Sbjct: 356 PAGDDSE----------INPIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIA 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ A ++ N+ +L + A A E ++ Sbjct: 406 QLKLTGLTHALAQQCALQSYHNNHVSLCLDPRQAALRS---AKQETKLAHALSEYFKKPI 462 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 T + ++TP L++ + ++ + L + + ++L Sbjct: 463 TLSIGVGDTSLSTPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQ 513 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 2/164 (1%) Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + + + T + + + W ++QL L L Sbjct: 356 PAGDDSEINPIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIAQLKLTGLTHA 415 Query: 539 VALNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 +A + +N V L L Q L + + KLA ALS + L+I D ++ Sbjct: 416 LAQQCALQSYHNNHVSLCLDPRQAALRSAKQETKLAHALSEYFKKPITLSIGVGD-TSLS 474 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 TP Q ++L QA E++ D +Q + + FDA+L +SI+ Sbjct: 475 TPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQPQSIQ 518 >UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 Tax=Exiguobacterium RepID=B1YGC8_EXIS2 Length = 561 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 148/436 (33%), Positives = 237/436 (54%), Gaps = 2/436 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ F +VVGQ H+ + N L R+ HAYLFSG RG GKTS+A+++AK Sbjct: 1 MAYQALYRVYRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C CR I +G D+ EIDAAS V++ R++ D V+Y P+ + Sbjct: 61 AINCEQAPVNEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYPPSEAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TI+SRC +F +K +V Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ ++++IL+++ I + AL+L+ARAA+G +RDALSL DQA+A +G ++ AV + Sbjct: 181 DQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFSNGDLTDDAVLEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++D+ L++ A+ ++++ + + G + + + +++ +++ SP Sbjct: 241 TGAVEDEALLAVANALQAHQVDQLLQTLEKMQRAGKDLKRFVEDLVFFYRDTLLLKTSPT 300 Query: 301 ALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ A + TI + L ++++ R+ VE+ ++ Sbjct: 301 AVDLLERARPTEAFKTFVETIETEACFHIIEQLHDCQQQMRLTNHPRVLVEIAFIQIAE- 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 R + +Q + P + P Q P + +A + Sbjct: 360 QGRTTGQIMQSLQQEVRELKEQMHQLKVTGVPAAEGTPAQQPAKRKQARPTVRIAKERIR 419 Query: 420 QRVQGATKAKKSEPAA 435 Q + A KA+ E Sbjct: 420 QMLSRAEKAQLLEIQE 435 >UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A8C7_THECD Length = 715 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 256/622 (41%), Gaps = 53/622 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA++ GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPATFAELKGQEHVAEPLQQALRNGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + G +D+IEIDAAS ++D RDL + +AP Sbjct: 60 SLNCEQGPTPDPCGKCESCVALGPGGSGHIDVIEIDAASHGGIDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + L Sbjct: 120 RFKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDKVIGTIRSRTHHYPFRLL 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E +L E + +EP AL L+ RA GS RD LS+ DQ +A D ++ Sbjct: 180 PPGTLRELVEEVLQSEGVPYEPAALPLVVRAGAGSARDTLSILDQLVAGADESGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D +V+A +G V A I+ G + ++L + + ++ Sbjct: 240 VSLLGYTDSALLNEVVDAFAARDGAAVFAAIDRVIESGQDPRRFATDLLERVRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + +M+ A + + L G +E+ A R+ +E+ Sbjct: 300 VPEAGSTGLLDVPPDELEQMQRQASAMGAATLSRAADLLHAGLREMRGATSPRLALELVC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP-------------------- 393 R L + + T Sbjct: 360 ARILLPAAYQDERSLLARLEQLEQRIAQGGIGTTVTGGASPATGAPAPSAPAPQGLAAPA 419 Query: 394 --------QSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNA 445 +SA +QAP+ P S+ A Q + P A A P Sbjct: 420 AAPAWPSAESASRQAPSA-YPTAPSRPPAPEPPAQGPSNQSAGASPAPVQAVPAAPRPGG 478 Query: 446 ALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 A A+ P P A + RW A +P A + Sbjct: 479 AGWGAAATPSVGGGIPAPG----AENRSVDNRWGAPSPPAPASSNAPAGGGPDVAAVRQA 534 Query: 506 TPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNN 565 P + + ++ W + +S + L + + + ++ + N Sbjct: 535 WPNIVEAVKKKSKVA--WTSIMSGVQPVSLEGNLL----------TLAFEVPGARTNFVN 582 Query: 566 RGAQQKLAEALSMLKGSTVELT 587 L E G + Sbjct: 583 GRRDTVLREVFREFFGVDWRID 604 >UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8S0_CARHZ Length = 511 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 134/355 (37%), Positives = 219/355 (61%), Gaps = 2/355 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RKWRP+TF+++VGQE ++ L N ++ ++ HAYLFSG RG GKT+ A++LAK + Sbjct: 2 YLALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C I +++ EIDAAS +++ R+L ++++ PA+G++KV Sbjct: 62 NCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHV F+LATT+ K+PVTI+SRC +F K + + Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L++I +E + +E AL L+A A+EG LRDALSL DQ + + +++ + +LG Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVF-NPKITVEDTLKVLG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L L+ A+ E N +++ I E RG++ + + ++L + + +++ + + Sbjct: 241 FVSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIK-NGIEV 299 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 M + ++R A + L + + +E+ YA R+ E+ LL+ Sbjct: 300 EELMPEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIWAEVGLLKVA 354 >UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfitobacterium hafniense RepID=B8FY14_DESHD Length = 554 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 141/451 (31%), Positives = 235/451 (52%), Gaps = 3/451 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ F D+VGQ+HV L N L ++ HAYLFSG RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C C I+QG +++ EIDAAS +++ RDL D V+ + ++ Sbjct: 61 ALNCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPE V F+LATT+ K+P+TILSR +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ + EP ALQ++A+ +EG LRDALS+ DQ + DG++ + V + Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL-DGKLGVEQVYQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ + LV+ ++ + + + + E +G++ ++ E+L + + + + Sbjct: 240 LGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYAST-Q 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA-F 359 A + + + + + + LL G +L YA + R+ E+ L++ + Sbjct: 299 AFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDS 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+V + ++ + + + + E L Sbjct: 359 QPGYSKESPQVLERLQELEEEIKNLSTGKSRQESKGELPKKVNERSSEPPGHKKPELPPL 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERL 450 Q ++ ++ + + + LE++ Sbjct: 419 QDKPAISQGGETAALSIEQVQGRWGDILEQV 449 >UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=15 Tax=Betaproteobacteria RepID=Q1LLG8_RALME Length = 795 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 216/511 (42%), Positives = 281/511 (54%), Gaps = 6/511 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNCET-----GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC GITA PCG C C EI+ GRFVD IE+DAAS V++ LLD YAP Sbjct: 61 ALNCTGPDGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAIYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+HIL +E I+H+ AL+LLA+AA GS+RDALSLTDQAIA GQVS + Sbjct: 181 KQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQAIAYSAGQVSEE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG +D + L++A+ +G ++ + + A R + + L ++ LLH++A+ Sbjct: 241 AVRGMLGAIDQSYLVQLLDALAAEDGATMLGIADSMADRSLSFAGALQDLGSLLHKVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PA++ ++ E +R LAR + QL+YQ +GR EL APD G MTLLR Sbjct: 301 QAVPASVQDEWPEAED-VRRLARQFDAQETQLFYQIANLGRSELALAPDEYAGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P + T A A P+ +V Sbjct: 360 MLAFRPSTAPASSVGGQGGGGQQVVRPRPAGTTSAAPSPRAMASAVAEPVAAEPVKVAPV 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 T A + AA +A P +AL A Sbjct: 420 VAPAAPTAPITAAAPAASAAPAMPAVPAKSAEPAPPQADVDTSMSPARAALAAARQASAG 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKT 506 + + A + Sbjct: 480 RAGRPMSAAPNAGAAAAASSRPAAQPLRPPS 510 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 78/292 (26%), Gaps = 12/292 (4%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P + AP V + + A + Sbjct: 504 QPLRPPSASRPATTAAPAPAPAVAPAAAPVVTPVVTQAVAPSKAAAAPVAAARPAPVAKP 563 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALER------LASVTDRVQARPVPSALEKAPAKK 473 A E A A+ P + + + + A + Sbjct: 564 APQPEAKSVPPWEAAGASDVPPWEEMPPDLPVIGPYDSDPGYDPSFGGFDNGFDSDSADR 623 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE---AIERDPWAAQVSQL 530 + P + ++ P+ A P++A + + W + L Sbjct: 624 APRAARKPAPTQSAAKPISKPEPEPAAQLAPAVPQVAPSAGEDGTPPVFTGDWPEFAATL 683 Query: 531 SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 L L +Q+A + LHLR + ++L AL V + V Sbjct: 684 PLKGLAQQLAHQSELHRVVGR-TLHLRVPVAAIAEANVAERLQAALVEHFRVDVRVQCVV 742 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T A E+ +A I D +Q L R F ++ SI+P Sbjct: 743 G--GVTHTAAAVDAAARAERQREAEAEIDRDPFVQGLLREFGGQIVPGSIQP 792 >UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 Tax=Synechococcus RepID=Q2JLX3_SYNJB Length = 779 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 258/524 (49%), Gaps = 8/524 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RPQ FADVVGQ V+ LAN + LGR+ AYLF G RG GKTS AR+LAK Sbjct: 6 NYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKS 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G T PC C CR I G +D++EIDAAS T V++ R+L++ Q+AP R+K Sbjct: 66 LNCEQGPTPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVNSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + ++ Sbjct: 126 VYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L I +E I P ALQL+A+ ++G LRDA L DQ ++ +G ++ +AV ++ Sbjct: 186 DMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQ-LSLLEGSITPEAVWDLV 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + + Q L+L++A++ + + V++ + RG E ALL ++ L + +V+ +P Sbjct: 245 GGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQ 304 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL-A 358 L + +++ A + L ++ + ++ +E+ L+ L Sbjct: 305 RELVAVTDSTWAALQQRAPRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALVDLLGQ 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P M + A P + PP + P A T+ P + S V + Sbjct: 365 LRPSMVAEDSAERSPFPALDLS---PAPQRTPPDGTAPPAPAATIS-PSSPSTVGEIDEL 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + S+ A + E RP K + Sbjct: 421 TVGPSASPAVASSQKADRATRTESSEQPREPARDAATVKLLRPHWDEFLKRLSPLTKALM 480 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 + + E + K +E ++ E + + + P Sbjct: 481 GSGHLHQETPEAITLAFPSKGLVEKVRSKEAELRSVLHNLLQRP 524 >UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CH16_9PLAN Length = 484 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 150/446 (33%), Positives = 231/446 (51%), Gaps = 7/446 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLAR++RPQ F++VVGQ V AL N + R+ HAYLF+G RGVGKTS+AR+LAK Sbjct: 6 MQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAK 65 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG C+ C+ I G VD++EID AS ++D R L NV R ++ Sbjct: 66 ALNCPHTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVNVRSMRSKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP +VKF+ TT+P KLP TILSRC +F ++ Sbjct: 126 KIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEE 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E ++ A+QL+AR A GS+RD+ S+ DQ ++ G+ ++ ++V + Sbjct: 186 NSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT D++ + L++A++E + + + A G++ + ++L L +++V + Sbjct: 246 LGTASDERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDLSVVATGAS 305 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + ++ A +Q L R + A R VE+ L+R Sbjct: 306 QVTLLSISEMNRASLQRQAEAWGIQTCLAAFQILNEARNRMFRASHGRALVELALIRMSL 365 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-----LPETTSQVL 413 L + S P P P P + + + Sbjct: 366 LEDLDLLSRFLSSGGQIPAAPAAVRQASPSLSAAAVSQPVSEPPTPPQESTEPSSDQKKI 425 Query: 414 AARQQLQRVQGATKAKKSEPAAATRA 439 + +++ + + S PAA T Sbjct: 426 EKKNEIESPVASESIESSPPAAETVP 451 >UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Tax=Gloeobacter violaceus RepID=Q7NK69_GLOVI Length = 632 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 162/475 (34%), Positives = 241/475 (50%), Gaps = 3/475 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F DVVGQ ++T L N L GRI HAYLF+G+RG GKT+ ARL+AK Sbjct: 1 MAYEPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+ C I G +D+IEIDAAS T V++ R+L++ Q+AP + R Sbjct: 61 ALNCIHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQ 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHMLS +FN LLKTLEEPP HV F+LATTDPQK+ T++SRC +F + + + Sbjct: 121 KVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I +E I E A++L+A+ A+G LRDA SL DQ +A +G + + + + Sbjct: 181 TDMVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQ-LALLEGTIGAERIWQL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + L + E + + R++ + G E +L ++LG + + +P Sbjct: 240 VGAVPERELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPD 299 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L AA +M E A+T+ + + L ++ + R+ +E+ LL LA Sbjct: 300 RRDLVAVTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGLLGLLA 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + A P P + P P P + Q Sbjct: 360 SPSQNQPVALAPAAARPAAPVPVPPPRPAEERPTPPPPAAPRGVEERPNSVPQPPVEPTP 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 QR Q + + A ARP + R +P + + Sbjct: 420 PQRPQVPPPSIEPAAAIHRPARPSGSTPDGTGLRERWPEWIRLIPQPTQSLMSSS 474 >UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37DC8 Length = 539 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 140/418 (33%), Positives = 214/418 (51%), Gaps = 5/418 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRP TF DV+ Q+ L N + G+ HAYLF+G+RG GKT+ AR+LAK + Sbjct: 2 YKALYRKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC CD CR+ + G D++EIDAAS V++ RDL D Y P RG++K+ Sbjct: 62 NCRNMKDGNPCLECDICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLK +EEPP +VKF+LATT+ K+P TILSRC +F + + E Sbjct: 122 YIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRCQRFDFRRIKPED 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I +E + ++A+ A+G +RDA+SL D+ + G ++ VSA G Sbjct: 182 IAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRC-SVGGEEIDEDVVSAAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D L+EA+ + + +++ + L E++ L I ++++SP Sbjct: 241 IAGRDYLFGLLEAINTGDTAKALSITASLYDMSKDIGRLCEELISQLRNIMLIKVSPDTA 300 Query: 303 GNDM---AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL-A 358 + + A ++RELA + I + L + A +RR+ EM L++ Sbjct: 301 ESLIVCVAEEMQKLRELADSTELDTIMSHISILQECSSNMNRAMNRRVEFEMALIKLCGN 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + P QV QQ + ++ A Sbjct: 361 IRNTTEAIDNSEIYDKIKQLEDKIKNAPVQVQSGAPQQQQQPEVLTASSPPTEADPAP 418 >UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 Tax=Cyanobacteria RepID=B1XPA0_SYNP2 Length = 742 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 168/632 (26%), Positives = 262/632 (41%), Gaps = 44/632 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFA +VGQE + T L+N L RI AYLFSG RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L I + E+I ++ L+A+ A G LRDA ++ G+++ V Sbjct: 181 PLDAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDA-ESLLDQLSLLSGEITPDKVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++ + + E V+ RG E +L + + + + + Sbjct: 240 DLVGAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTA 299 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L + + A + I Q L +L R+ +E+TLL Sbjct: 300 PQRGDLIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L P TP Q+ P P P Sbjct: 360 L-------------PAAFGQTQTTRTATTPLNTQINLQTQPTATPPTSPPPPQDIPHPFG 406 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + G P + + ++ + +A + Sbjct: 407 ETPPATNGHGSGTPPSPVDTQVHQVPPKPEVPQVPAPVPEAKAIAKAPPSQDVIPPTVQP 466 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T AL+ + W V QL L Sbjct: 467 TEPPPLSPSPPATTSPTISALE--------------------REELWQGIVRQLPLLSQS 506 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD---- 592 + +D++ + ++S+ + +L A + G+ +++T+ Sbjct: 507 LFRDHGKLLQLTDHSALIGIKSANLLKIAKNKTLQLEAAFEKICGNPLKVTLQVGHGLEN 566 Query: 593 --NPAVRTPLEWRQAIYEEKLAQARESIIADN 622 TP+ A ++ A+ I Sbjct: 567 GQGGTSVTPILSTPAPAPTVISPAQNPIEMPP 598 >UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBF2_9BACT Length = 638 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 130/422 (30%), Positives = 209/422 (49%), Gaps = 10/422 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP TF VVGQ + T L N + G++ HAYLF G RGVGKT+ AR+ AK + Sbjct: 4 YIVSARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI 63 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE C C++CR + R ++ E+DAAS V+ + L++ + P G++K Sbjct: 64 NCEHPREDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPPQVGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDEVHMLS +FNA LKTLEEPP+HV F+LATT+ K+ TILSRC + + + V Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVA 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L+ + +E I +E +AL ++A A+G +RDALS+ DQA + G ++ Q V L Sbjct: 184 NTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 LD D LV+ +E +M ++ RG + ++ + + + M + P Sbjct: 244 NVLDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAK-DPQT 302 Query: 302 L--GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + + + A+ P + + + + ++R+ VE+TL++ Sbjct: 303 LPLLETSDDQKAKFQAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQIGQI 362 Query: 360 HPRMPLPEPEVPRQSF------APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 P R + + + +P + + + P + Sbjct: 363 TQPEDQDVPSAGRTPNRLKSLFQKLLAQSKLASQGAGSEPSGSSENRSSQPGASAATATA 422 Query: 414 AA 415 Sbjct: 423 VP 424 >UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Tax=Corynebacterium RepID=C3PJQ2_CORA7 Length = 868 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 170/623 (27%), Positives = 275/623 (44%), Gaps = 20/623 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCGVCD+C + G +D+ E+DAAS VED R+L D YAPA R+++ Sbjct: 62 EQGPTSTPCGVCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S NALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 ++ LE + E++ + ++ +A GS RD LS+ DQ +A +G ++ +L Sbjct: 182 MKGLLERTVASENVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGAGPDGLTYDVARPLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D+ + +EA+ + + L+++ G + +++L L + ++Q P+A Sbjct: 242 GVTDEGLLDNTIEALASQDKAGLFRLVDDVIEAGHDPRRFAIDLLDRLRDLMILQAVPSA 301 Query: 302 LGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + A+ + +T+ L A R+ +E+ + Sbjct: 302 LEEGLVSAPTDRGEVLTAQAQRFSGPQLAYLAETVNERVSSLRGATSPRLLLEILCAHLI 361 Query: 358 -----AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 A LP P AP T Q A Q P +Q Sbjct: 362 VGAAPAAAAAGQLPTAAPQGAGAQPSAPAGQPTAPAQRQQSAVASAQDPAAAAAAIIAQR 421 Query: 413 LA--ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + A +Q + Q + + A + + ++ + E P Sbjct: 422 RSRQAAKQEAQQQQPLQQPQQAEKAQEAVQQAQQTPAPEDSQPQVPERSAQPEAQPEPQP 481 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + + +Q E + ++ E+ PE A R W+ + + Sbjct: 482 EQPKQRQEQPERQQQEQHEQQQQEQTEQQEQAREQHPEAEQPQDPAAEIRGRWSDLRATI 541 Query: 531 SLPKLVEQ--VALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVEL 586 V + +A D+ + L + +N+ G + + L T+++ Sbjct: 542 GRRNKVAEIMLAEARVLGVRDDTLVLGHTTGALAERINSPGTNEVIVTVLQEELNRTLKV 601 Query: 587 TIVEDDNPAVR--TPLEWRQAIY 607 T V +P T E Q Sbjct: 602 TCVIGTDPKAHGFTVTEPVQRTQ 624 >UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C46EC Length = 614 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 179/523 (34%), Positives = 269/523 (51%), Gaps = 17/523 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V+AR++RPQ F++++GQEHV AL N L GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 16 AYTVVARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKA 75 Query: 62 LNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC T TPC CD+CR + G VD++EID AS KVE+ RDL NV + PARGR Sbjct: 76 LNCLKTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPARGR 135 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS +FNALLKTLEEPPEHVKF+LATT+ QK+P+TILSRC +F + Sbjct: 136 YKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVG 195 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +I QL+ I+ E + AL+L+AR A GS+RD+ SL DQ +AS G ++ V+A Sbjct: 196 PGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTA 255 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT DD+ + L +A++ + + + I E RG++ L+ +++ + +V Sbjct: 256 VLGTAGDDRVIELAKAILANDPKTALDRIAEWVERGLQIGELIDQVVEYWRALMLVSCGG 315 Query: 300 AALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + +R A+ + + + L + + P ++ +EM ++R Sbjct: 316 PDVRELPVSPNQHEAIRTQAKAVSLDTVLAGLEILTATKARMRGTPHVQVLLEMAVVRLC 375 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 L + AV P ++ P T + LA+ Sbjct: 376 RLPDLRSLSQLV-----------QAVSQPGVQFVASAASNGNPPPARPQPTPAAPLASEA 424 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + AT + SE + + P A + V R A EK P + R Sbjct: 425 AKKNGTPATAGRPSENGS--SSVPAEVTATPLSDATVQTVWDRFFRYATEKYPILSQHLR 482 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 + ++ + + + E E + +A++R Sbjct: 483 YASSYAIFGPNALAVRFPTSYANAKKECEGEASLARFQDALKR 525 >UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX9_THEYD Length = 512 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 226/388 (58%), Gaps = 2/388 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LARK+RPQ F+D+ GQ+ V+ L N L G+I HAY+FSG +GVGKTS AR+LAK Sbjct: 1 MEYLGLARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C I++GR + +IEIDAAS T VE+ RDL +N++YA A G + Sbjct: 61 ALNCIDSQN-KPCDKCPSCVAIKEGRAMSVIEIDAASHTSVENIRDLRENIRYASAEGFY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS+ +FNA LKTLEEPP HV F+LATT+P+K+P+T+LSRC K + + Sbjct: 120 KVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRIPI 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ +L+ I N+E+I AL +A +EGS+RDAL++ DQ + + V+ V+ + Sbjct: 180 NLIKQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTEN-VTQDNVNLL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D + L E +++ N E+++ + E G +++ L+ +++ + + +++ + Sbjct: 239 IGGTDVNVLYELTECLIDGNREKIILKVEELNNFGTDFKRLVGDLINFIRNTLISKITKS 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +L + + + + L+ + + R+ E+TLL+ Sbjct: 299 FKLYISESEASLIEKLNKKTSEEHLVVLLKELINSEFAIRSSFFPRVIFEITLLKLSFLA 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQ 388 + + + +P+ P ++ Sbjct: 359 HFKNIDDIIEEAKKKSPLQPPSLPLNNN 386 >UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YCC7_DICT6 Length = 521 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 146/422 (34%), Positives = 222/422 (52%), Gaps = 8/422 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L RKWRPQTF +VVGQEH++ L N L I HAYLF+G RG GKT+IAR+LAK LN Sbjct: 3 IALYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T TPC C++C EI +GR +D+IEIDAAS +++ RD+ + + P R R+KVY Sbjct: 63 CVQGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKVY 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLK LEEPPEHV F++ATT+PQK+P+TILSRC +F + L +++ Sbjct: 123 IIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFDFRRLTRDEV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 QL I +E AL+L+A ++GS+RDA+SL +Q + D +++ + +LG Sbjct: 183 IKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQEITEELARNLLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AA 301 + + +A+ E N +L+ + G + E+L + +++ Sbjct: 243 PTYEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFRNLLLLKADERIGN 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 L + + + + +Q LLI L + + +EM LL P Sbjct: 303 LLSLTQEEFEELMQETKLYTIKRLQDIIDQLLILENRLRDLTNAPLVMEMILL------P 356 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 E + P+ +P + ++ P + Q L + Sbjct: 357 LFMKEETAETQPISQPLTQAVSSSPKGEEKTEEKDKKEEIVTGKPNIDEIIDKWPQLLAK 416 Query: 422 VQ 423 ++ Sbjct: 417 IK 418 >UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LG88_CORK4 Length = 990 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 162/557 (29%), Positives = 250/557 (44%), Gaps = 23/557 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFADVVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++CR + G +D+ E+DAAS VED RDL D YAPA R++V Sbjct: 62 VHGPTSTPCGECESCRALAPGGPGSLDVTELDAASHRGVEDMRDLRDRAIYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR Q+ + L Sbjct: 122 FIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSRTHQYPFRLLAPND 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 +R LE I +EE + E L+ RA GS RD+LS+ DQ +A D ++ + +L Sbjct: 182 MRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGADENGITYAHAAGVL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + VE++ + + IN G + +++ + ++Q P A Sbjct: 242 GITDSALIDAAVESVANNDPAGLFTTINNVLDAGHDPRRFATDLVDRFRDLLVLQSIPDA 301 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + A+++ P + + G EL A R+ +E+ R + Sbjct: 302 FDQGLVDAPLDQRETLADEAQSLGPATLTRCAAVVSDGLNELKGATSPRLLLEIMCARMV 361 Query: 358 ---AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 A L + +S P A + S+ + T + A Sbjct: 362 MPGAADGIEALSQRVEALESGQPTASRSTSDNGHRVGSTSSSASEDGTRAAGSGAADNGA 421 Query: 415 ARQQLQRVQGATKAK-----KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + K + P + + E + + Sbjct: 422 SGSDANATPPRAKGGGRIIWPRKNKKTETPTPQTSPSSEANTETSQEAKGTEHRDTGNAK 481 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 P + ++ A +E ATP + A + + + + + Sbjct: 482 PQETQSTSSGAPETPASPQEDAATPSQDEAAASSQAEAAPSQESVD--------PRTMDR 533 Query: 530 LSLPKLVEQVALNAWKE 546 +L K + + AL +E Sbjct: 534 ETLSKYLREQALQQERE 550 >UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATA7_RUBXD Length = 567 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 157/546 (28%), Positives = 242/546 (44%), Gaps = 17/546 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L R+WRP+TF ++ GQE V+ L + GR+ HAYLFSG RG GKTS A++LA Sbjct: 1 MKHATLYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G T PCG C++CR I G +D+IE+DAAS +++ R+L D V APA GR Sbjct: 61 GLNCAQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVNLAPAAGRA 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLK LEEPPEHV F+LATT+ K+ TI+SRC F + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + +L I E I E AL +ARA+ GS RDA + DQ + +G+V+ V + Sbjct: 181 GTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVREL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+ + +A+ E + +++ ++ G + E++ L + ++ +P Sbjct: 241 LGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQFAAELISHLRVLMLLPHAPE 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + E AR IP + + L + D ++ +E+ L+ Sbjct: 301 AALAEAGPEERPALEEQARRIPTGETVRMIEALGETSGRIRRGGDPKLELELCFLKLARD 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS-------APQQAPTVPLPETTSQV 412 + L ++ P + P + A + P P T Sbjct: 361 YTEPSLEGLVRRVEALEKRLEEGSAPPRENPAKESPEQPPDGRAGEAPPRQEEPPRTGAE 420 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRAR---------PVNNAALERLASVTDRVQARPVP 463 L LQ ++ + + + R + S + + P+ Sbjct: 421 LDWDSVLQELRARRQVPVAALYESARVEGCEDGLVKISFPEELAPLMKSAGEPKRVEPLR 480 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 LE+ + K + + P E E P + + Sbjct: 481 DVLEERLGFRPRVELKLSGEAPPRPPAAYPPSPEPARREGEDAPRAQERPHPPREGPEGE 540 Query: 524 AAQVSQ 529 + Sbjct: 541 EDVIRS 546 >UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteobacteria RepID=Q1NUY3_9DELT Length = 706 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 170/705 (24%), Positives = 281/705 (39%), Gaps = 76/705 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+TFA+VVGQ V+ L N L L R+ HA LF+G RGVGKT++ARL+AK Sbjct: 1 MSYLVLARKWRPRTFAEVVGQRPVVRTLQNALRLQRVAHAMLFAGVRGVGKTTLARLMAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC+ + PC C +C+EI G VDL EID AS +++ R+L +N+++ P Sbjct: 61 ALNCQEPEPASRPCNQCKSCQEINAGAAVDLHEIDGASNRGIQEIRELKENIRFLPVSAS 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+ +IDEVHML+ +FNALLKTLEEPP HV F+ ATT+ K+P+TILSRC ++ L + Sbjct: 121 YKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILSRCQRYELTRVA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ + E + AL +++R A+GS+RD LSL DQ + DG + V Sbjct: 181 YDELLAFFRQVAAREEVTISEAALAMISREADGSVRDGLSLLDQVFSFADGGIDDDDVRQ 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D L A++ R + + + G+ + ++L + + + + Sbjct: 241 LLGLVDRRVFAQLARALLAGELGRALEIFDRGQRAGMNLKRFAADLLDYFRNLVVCRATA 300 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A L + + E+A P + + LL G +E+ YA ++ +EMT++RA+ Sbjct: 301 GARQLLELGEQELVELEEIAAAHSPETLLYCFNLLLKGIEEMQYASRPKLVLEMTMVRAV 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +P E P P+P + + +T + + Sbjct: 361 EAGQIVPTAEALGRLDQLLAGLPAEEQIAVAATPRPTARGEGKAAPGGGDTAVEAYQKPE 420 Query: 418 QLQRVQGATKAKKS--------------EPAAATRARPVNNAALERLASVTDRVQARPVP 463 + G + + + EPA + + + +R Sbjct: 421 EAAVTAGIGEPEPALAVSDHGAPHLAAIEPAHVPMYASPSRLPQDAVPRDRLPRGSRDQL 480 Query: 464 SALEKAPAKKEAYRWKATTPVMQQ------------------------------------ 487 A E + Q Sbjct: 481 PLAGVATDPGEPEPELSGADTGQAPAAAGGPEPPPAAPASPKSPATSATPTEPPPEPTPE 540 Query: 488 ------------KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK- 534 A +K + + R W V + K Sbjct: 541 PTPKPTPKPPPESPAGQQTGDEAPAAGVDKAAAVKGRSREGRDLRRQWDDFVRYVRQRKI 600 Query: 535 -LVEQVALNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + + + A E + + L + L + L E +++ + Sbjct: 601 WMASVLEMVAGIREENGELRLRYDDPADCKLLEETENSRLLTEFAQDFFQRELKVRLRIR 660 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + E + R ++ D +Q + F+ E+ Sbjct: 661 GGDSKEVAA-------NELPREERRALAGDPLVQAVTEIFNGEVV 698 >UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 Tax=Gammaproteobacteria RepID=A1AWB5_RUTMC Length = 529 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 183/425 (43%), Positives = 261/425 (61%), Gaps = 12/425 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP +F +VGQ H L N L +HH +LF+GTRGVGKT+IAR+L Sbjct: 1 MSEHYQVLARKYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK +NCE GI++ PC C C EI++G+ +DLIE+DAAS T V++ RD+L+N QY P++ Sbjct: 61 AKSINCEQGISSKPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMRDILENAQYMPSKN 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+YLIDEVHMLS++SFNALLKTLEEPPEHVKFLL TTDPQKLPVT+LSRCLQF L+ L Sbjct: 121 RYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTLQQL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++I QL+ I+N E +++E AL +A GS+RDALSL DQ+I+ G G V+ + Sbjct: 181 THDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISYGKGTVTNADIK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 AMLG + D + L + + + V+ I + + RG L ++ L H+I++ Q+ Sbjct: 241 AMLGLVHHDDIIKLTTHLFSQDAKAVIDFIKDLSRRGENLSNALKDLSSLFHKISISQIV 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ L+ I D+Q++YQ + G K++ AP ++G EMTLLR LA Sbjct: 301 -------NTESNKTIQNLSTQISNFDLQIFYQMSINGSKDMALAPSEQIGFEMTLLRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F +P ++ + + P + QP+ + T P + Sbjct: 354 FRSDT---QPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGITKPTILDINNQQQWETL 410 Query: 419 LQRVQ 423 +Q ++ Sbjct: 411 IQTLE 415 Score = 83.9 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 75/194 (38%), Gaps = 4/194 (2%) Query: 452 SVTDRVQARPVPSALEKAPAKKEA-YRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 ++ Q + L + + + ++ + ++ P K + E+ P + Sbjct: 335 ALAPSEQIGFEMTLLRMLAFRSDTQPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGIT 394 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQ 569 + + W + L + + N + ++N + L L + +L + Q Sbjct: 395 KPTILDINNQQQWETLIQTLEFKNGAQILVKNTLFDNTNNATLTLTLDNQFANLLSDQVQ 454 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 + + L ST+ L I P +T + + + EK+A+ + + D +Q L + Sbjct: 455 KSMLTTLRQK-NSTLNLVINLG-KPNAQTLAQKQTQAHNEKMAKIQTQFLNDKGVQKLEK 512 Query: 630 FFDAELDEESIRPI 643 FD +++ SI+ I Sbjct: 513 IFDTKININSIKKI 526 >UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 Tax=Dehalococcoides RepID=A5FRM9_DEHSB Length = 570 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 168/582 (28%), Positives = 258/582 (44%), Gaps = 27/582 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ QV RKWRPQT AD+VGQEHV L N LS GRI AYLF G RG GKTS R+LAK Sbjct: 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAK 63 Query: 61 GLNCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC T PC C C I +G +D+IEIDAAS T V+D R+L + VQY+P+ Sbjct: 64 AVNCTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLAN 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS + NALLKTLEEPP V F+LATT+ K+ TI+SRC +F + Sbjct: 124 YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + +L I E I EP AL+L+AR+A GS RD +L Q + ++S V A Sbjct: 184 LVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG D++ +L E +++ + + + +N A G++ + E+L L +I +V Sbjct: 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGS 303 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR--MGVEMTLLRAL 357 + A + +++++ +I +L ++ D + E+ L+ A Sbjct: 304 ESSLELTADEKKALQKVSGITNLENITKAI----KAFSQLDFSSDTASSLSFELALIDAS 359 Query: 358 AFHPRMPL---PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 +PL P+ E+P AP P P+ P T+++ A Sbjct: 360 LDKNTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTKEPKTETLTK-PNTSAETAA 418 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + + P E + K+ + Sbjct: 419 TPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEEKVLIGAGDIIEQLKVSWKSILDQA 478 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 K + V + P ++ + + + ++ +L K Sbjct: 479 PDNLKRSAAVAILRSAGVRPVSMD------------KNIVTLSFKYKYHKDKIEELENRK 526 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL 576 + ++ N L S + QKL + Sbjct: 527 VTAELISNFV----GKTCTLVCISEAETNHLVKQAQKLGAQI 564 >UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunits gamma/tau dnaX n=2 Tax=Parachlamydiaceae RepID=Q6MDZ7_PARUW Length = 522 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 164/522 (31%), Positives = 256/522 (49%), Gaps = 5/522 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARK+RPQTF +V GQE V+T L N + R+ AYLF G+RG GKT++AR+ A Sbjct: 1 MSEYQVIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC+ PC C +CREI G +D++EID AS +ED R + + V YA G Sbjct: 61 KAINCQNSTEDFEPCNQCTSCREITSGSSLDVLEIDGASHRGIEDIRQINETVGYAATSG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHML++ +FNALLKTLEEPP VKF+ ATT+ K+ TILSRC +F+L + Sbjct: 121 QYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + QI +L+ I ++ I E ALQLLA AEG LRDA SL DQ +A +G+++ V Sbjct: 181 PLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLFDQIVAFSEGKINAATVQ 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++LG + + L A E N + + A G + + ++ I ++QL+ Sbjct: 241 SILGLMPREAYFELDLAGKEGNFVKAFEIAYRIFAEGKDLNHFIEGLIDHFRHILLIQLA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + L + A L+ +++ + ++ +E LL Sbjct: 301 GITSPLLTISPKEKQFYERAAHLYTQEQCLDLIDYLIESAQQIRFTHSGKIALEAILLHV 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV-PPQPQSAPQQAPTVPLPETTSQVLAA 415 + H R+P+ + A + + V PP +S PQ + + + Sbjct: 361 IRSHFRLPIEVLVQRLGELEQMLGEASLVNSSVFPPLSKSTPQSSLSTEVKNPPLTPPVP 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + Q T + + ++ A + + + + V P P+ + + ++ Sbjct: 421 LTNNKPSQNLTTSPIEKNLNSSTATSLLSPSTNNCSLFDHFVSEDPTPTQSDLGRSTQKL 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + V + TP L EL KL +A Sbjct: 481 PNKDSPSLVAKLNGDNPTPVHQYDTLFQFAAIELEGKLQRKA 522 >UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Streptomyces RepID=Q9RKL5_STRCO Length = 784 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 169/656 (25%), Positives = 269/656 (41%), Gaps = 65/656 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP++FA+V+GQ HV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MSSLALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T TPCG C +CR++ + +D+IEIDAAS V+D RDL + + PA Sbjct: 61 CLNCEQGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPASS 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+Y+IDE HM+S FNALLK +EEPPEH+KF+ ATT+P+K+ TI SR + + + Sbjct: 121 RYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 +R L + E IA E L L+ RA GS+RD++S+ DQ +A +G V+ Sbjct: 181 PPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGADGVTYDMT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +++LG D S+VE+ V +G +++ G + + ++L L + ++ Sbjct: 241 TSLLGYTDGSLLDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLERLRDLVILAA 300 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A + RM+E AR+ ++ + G E+ A R+ +E+ Sbjct: 301 VPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVNEGLTEMRGAHSPRLQLELIC 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV------------------------ 389 R + + Sbjct: 361 ARVMLPAAYGDERSVMARLDRIERGVQFSGGAGAPAMGYVPGPEAHAGAGAAAPVAAPVP 420 Query: 390 -----PPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNN 444 + Q A T P + ++ V A + Sbjct: 421 GGGPAAARAAVRGQGAGTPPGGDPSADVAAGAGDGAGAGTGPASDAGGAPPGGGHPQAAP 480 Query: 445 AALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHE 504 ++ + A P P+A W + P + P A Sbjct: 481 SSADVAPVPAPPSPATPSPAAAPAPAPASAPGAWPSAAPAGGGRRPGGWPTATPAGGGQP 540 Query: 505 KTPELAAKLAAEAIE------------------------RDPWAAQVSQLSLPKLVEQVA 540 +TP A A R W + + + + Sbjct: 541 RTPAAPASGPAATAAQAPAPAAAAPAPVSPPSGASGVDPRSLWPNILEAVKNRRRFTWIL 600 Query: 541 L--NAWKEESDNA-VCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 L NA D + L + ++ + + G++ L +AL+ ++ V D Sbjct: 601 LSQNAQVTGFDGTSLQLGFVNAGARDNFVSSGSEDVLRQALAEQFNVQWKIDAVVD 656 >UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAJ4_9FIRM Length = 593 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 137/441 (31%), Positives = 228/441 (51%), Gaps = 6/441 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L R +RP +F +V GQ+H++ L N + +I HAYLF G RG GKTSIA++ AK Sbjct: 7 MGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFAK 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE+ PC CDNC ++ G D+IEIDAAS VE+ R+L++ V+YAP +G++ Sbjct: 67 VINCESKEH-KPCLQCDNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYAPLKGKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKT+EEPPEHV F+LATT+P K+ TI+SRC +F + Sbjct: 126 KVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPK 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ IL +EHI + ++L+A+ A+G LRDALS+ DQ IA + Q ++ + Sbjct: 186 NEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYATNHIELQHINEI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L + +M +++ +G++ L V+++ LL + + + Sbjct: 246 YGITTVQEKMKLFHHIFNNEPVDLMDMLDGMLEKGLDIPRLTVDLIELLKESIIFEYTKD 305 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E + + L+ ++ +A + E+ LL + + Sbjct: 306 SSLLHSLSNEQAVEFITSK-SLKARFEMIHLLMDTYEKYRFASNVGSYFEVCLLEMINCN 364 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP-ETTSQVLAARQQL 419 + E ++ + V ++ + Q ++ + T+ E + Q Sbjct: 365 G---ISELQIEKTEPKAVDAKKNVSRETLSNQNETINDERDTIETEFECDTAEEIFEQAS 421 Query: 420 QRVQGATKAKKSEPAAATRAR 440 + + K P Sbjct: 422 EEITVNEDKKGQAPIKPLDNE 442 >UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Tax=Alphaproteobacteria RepID=C6ABP2_BARGA Length = 646 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 177/643 (27%), Positives = 293/643 (45%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATPCGVCDN----CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P V D+ C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G V+ AV Sbjct: 189 IESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVNAIAV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPILSRNWQMLLKGLQEVNQTARPLQAAEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 +P + + + + T V + + + V +S V Sbjct: 369 LAH-TADLPTLDEALKKLTQEKTPLTLVKNSSHQESTNANNITKETMVEA-HASSSVSNT 426 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 ++ + K + + VT+ ++ EK+ + Sbjct: 427 LPDQSDLKTSLKNQLDHSLQPENLVKNQTPDKINVQEVTETLENSQSIDLSEKSANLSRS 486 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 Q E + PK L H+ A L Sbjct: 487 VT--------QTTEKITQPKTLVINSLHDIVQLAEQHNDA---------------PFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 +++ + L L + ++K+++ TI + Sbjct: 524 IKEFVH--PVSFEAGHITLRLSENTPQFLAHDIEKKISQWTEK------RWTITFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESIAIQKTLFSNA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8U6_TOLAT Length = 760 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 268/545 (49%), Positives = 327/545 (60%), Gaps = 5/545 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ F +V+GQ+HVL AL+N L GR+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPRNFHEVMGQQHVLQALSNALDQGRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C CREI+QG FVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 CLNCETGITSRPCGQCSACREIDQGNFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL Sbjct: 121 KIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALTR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL+ +L E + +EP AL LLA+AA+GS+RDALSL+DQAIA G+G + + V M Sbjct: 181 EQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSLSDQAIAYGNGLLQAETVQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ + +G +M I A +++ L VE+ LLHR AM QL Sbjct: 241 LGTLDHRQLYQILSLLAARDGAALMQQIGSLAELAPDYDQLHVELASLLHRTAMWQLLGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ LA IPP ++QLYYQ L GRKELP APD R +EMTLLR LAF Sbjct: 301 Q-TEPGADDTEELQLLAEQIPPEELQLYYQITLNGRKELPLAPDGRSALEMTLLRMLAFA 359 Query: 361 PRMPLPE-PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 PR P E P+ AP A T P A + LA + +L Sbjct: 360 PRAGRPAITEQPQLIHRNTAPAASFVATPARPDVIPAAVPVAPPVTASAAVEDLAMQAKL 419 Query: 420 QRVQG---ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + Q A ++ +P + PV A ++ Sbjct: 420 MQEQAELMAQAEQEMQPRPLPVSPPVTEAPAPVAVIPAVAPATPAASGPEVNNSGVQDII 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R + +Q+ T + A+ + P ++A P Q P++ Sbjct: 480 RLRNQLRSRRQQAENQTESHVTPAVMPARIPANRGEIAPLPATAAPARTVAPQDVQPQVA 539 Query: 537 EQVAL 541 AL Sbjct: 540 GNRAL 544 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 100/285 (35%), Gaps = 3/285 (1%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + + + Q A A +P L A Sbjct: 468 PEVNNSGVQDIIRLRNQLRSRRQQAENQTESHVTPAVMPA-RIPANRGEIAPLPATAAPA 526 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R + + + L L + D+ + + A R Sbjct: 527 RTVAPQDVQPQVAGNRALSDDLPPWELPPLTAYQDQEAFISPVDSEQDNAAPSFKQRQSD 586 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI-ERDPWAAQVSQLSLPKLVEQV 539 + + P + + E ++ + + + D WA V++L + V Q+ Sbjct: 587 RFTPSAPPVMQSNPAPVSRLPETDEDDDSVWRSNELLLRSSDQWAQTVAKLPVAGRVRQL 646 Query: 540 ALNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A+ A + ++ L +R+ RHL Q+LAEA+S + + + L + A+ Sbjct: 647 AMQAVVTDQQADSWHLQIRNEARHLAQPRMVQELAEAISTILPTAINLQVEPVVQLALPC 706 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P E Q +A +++D N+Q L++ F A LD+ SI+P+ Sbjct: 707 PAEIEQQERIRLQQEAELLLLSDPNVQFLQQRFGATLDDGSIQPL 751 >UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJ36_9DELT Length = 747 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 189/731 (25%), Positives = 293/731 (40%), Gaps = 91/731 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y LARK+RPQ FAD++GQEHV L N + R+HHAYLF G RG+GKT+ AR+LAK Sbjct: 1 MAYLALARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTTAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T PC C +C I +GR VD+IEID AS V+D R L D V Y P R Sbjct: 61 CLVCEHGPTPEPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYLPQIARR 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP HV FL ATTDP K+ TILSR + + + Sbjct: 121 KIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYRRVRA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVS 238 + L+ IL +E A EP L ++AR +GS+RD+L+L D+ IA ++ + V Sbjct: 181 ATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFAHDPKAITGEEVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG LV+A+++ + V+ + + G + L V +L L + ++ L+ Sbjct: 241 TVLGQASRYAVAELVQAILDRDAASVLQRFEQITSSGSDLMQLAVAILQHLRDLTVLSLT 300 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + AL + + +++ A PT + ++ + ++ R+ +EM LL Sbjct: 301 KSRAALLDMNDDLFEQLQRQAGATSPTVVAQHFDRFARVVDSIEHSRVPRLVIEMGLLEL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 ++ P MPL + + + PT + + P Q A+ Sbjct: 361 VSAEPLMPLGDLVTRLDALSKGRPTPRGGGGGGGGGRRGSGGGGGGRPRGPAPRQAAPAQ 420 Query: 417 Q---------------------------QLQRVQGATKAKKSEPAAATRARPVNNAALER 449 Q + + PA + + LER Sbjct: 421 AAPMRAGPPASAAPMPAPTPAPNPSPVVHRPPAQTQAPKRATAPAGGGGSGNASADMLER 480 Query: 450 LASVTDRVQARPVP----SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 +A + +P P + A ++ A ++ P P + Sbjct: 481 MAREAGLLGGKPEPAQARTPQRNAAPQRSAAAQRSAPPQSNAAPQRNAPPQYQDGPPPRD 540 Query: 506 TPELAAKLAAE---------AIERDPWAAQVSQLSLPKLVEQVALNAWKEES-------- 548 P A + A+ D + K + ++ Sbjct: 541 EPPWPVPAANDPRSPQGQGFALTNDRLRPVEPSSEVAKDPQAACPSSRCTPREPIQWRQL 600 Query: 549 ------------------------DNAVCLHLRSSQRHLNNRG---AQQKLAE------- 574 DN L L L A+ +L E Sbjct: 601 GSWDAWETFLSRVRQENDLLSAVLDNLGLLSLTEGHVELAAPANGFARTQLRENPEIEAA 660 Query: 575 ---ALSMLKGSTVELTIVEDDNPAVRTPLEW--RQAIYEEKLAQARESIIADNNIQTLRR 629 + G + L +V+ P + + Q + I+ L Sbjct: 661 FEALAAAYFGENMHLELVDIVPSLPDAPSMLLVYKERQRKHREQIEHDAHSHPRIRALLH 720 Query: 630 FFDAELDEESI 640 F E+++ I Sbjct: 721 AFGGEVEKVDI 731 >UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C334AE Length = 726 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 150/601 (24%), Positives = 260/601 (43%), Gaps = 58/601 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L +K+RPQTF +VGQ+ ++ L+N + RI HAYLF+G RG GKTS AR+ AK + Sbjct: 4 YEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSI 63 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + +PCG C+ C+ I +G +D+IEIDAAS T V++ R++++ ++AP + R+ Sbjct: 64 NCLASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFAPMQLRY 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HMLS +FNALLK LEEPP+HV F+LATTDPQ++ TI+SRC +F + + + Sbjct: 124 KIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAI 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L I EE+I E AL L+A+ + G LRDA SL DQ G+++++ V+ + Sbjct: 184 EEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFT-GKINSEKVNDL 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + LSL++A+ N + ++ + +G E +L + + + ++SP Sbjct: 243 VGLISERDLLSLLQAIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQ 302 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L I + A I Q L +L + +E+ LL L Sbjct: 303 CPELTMISKDIWKELCIEAEFWKTDRILKNQQKLRNSEIQLKSTTQPYLWIEIILLDLLQ 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + + + + + P+ Q + Sbjct: 363 EEKEFSIDSNNLDIAA-------------------KFSSNKKLVIDDPKIEDQTKGNIKN 403 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 L K ++ E Sbjct: 404 LVENSNNKKL------------------------------ITDDSRIEDQTKGNIENLVE 433 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS--LPKLV 536 + + + + ++ ++ + A W + L L L+ Sbjct: 434 NSNNKKLITDDSRIEDQTKGNIENLVESSSKSSVSTSNADLEGTWNLIIQNLPPFLAGLI 493 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 ++ + + SS + ++ A + G V +++ + P Sbjct: 494 KE--HGCLVSHKGRTATVGMSSSPLLELTKSKLSEIELAFEKVIGHKVTISLKVETKPKS 551 Query: 597 R 597 Sbjct: 552 S 552 >UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bacteria RepID=A4CK17_9FLAO Length = 631 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 162/651 (24%), Positives = 265/651 (40%), Gaps = 52/651 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RPQ F DVVGQ+ + L N + + A LF G RGVGKT+ AR+LAK + Sbjct: 15 FIVSARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKI 74 Query: 63 NCETGITATPCGVCDNCREIEQGRFVD-------LIEIDAASRTKVEDTRDLLDNVQYAP 115 N E G D + E+DAAS V+D R+L+D V+ P Sbjct: 75 N-------------------EDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPP 115 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G++KVY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC F Sbjct: 116 QVGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDF 175 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + + V L++I ++ I + AL ++A+ A+G++RDALS+ D+ ++ +++ + Sbjct: 176 RRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNKLTRK 235 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV+ L LD D + +++ + ++ NE A+G E + + + + Sbjct: 236 AVAENLNVLDVDVYFESTDHILKGDIPALLIYFNEILAQGFEGHHYINGLASHFRDLMVC 295 Query: 296 QLSPA-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 AL ++ R E A + + + + R+ VE+ L+ Sbjct: 296 TSQETVALLETSESVRQRYLEQASHCSGEFLLAALDLANQCDLDYKTSKNHRLLVELCLM 355 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + R P A Q PP + ++ + P + Sbjct: 356 KLASLTQRQKKKARNGEDAWLIPAAAFH----NQTPPPETVSEPESTSKPAAGAQEGAES 411 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + T++ E+ S ++ + E Sbjct: 412 SPETVGSAHQTTESIPESKDMPESKDIREPEGAEQSQSPDNQKETSAPAGPKETPAPTLP 471 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTP---ELAAKLAAEAIERDPWAAQVSQLS 531 + K+ V K KA H P +L E+ + W Q Sbjct: 472 VGKKKSGQKVSGLSLSSIRAKKAHKASRHHAAPNPEDLPRDPFEESELQALWKEFAEQTE 531 Query: 532 LPK---LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELT 587 L + + K D+ + + L +S Q +L + L ++L Sbjct: 532 KRGRKILAASLGTDLPKLIGDHVIWIELPNSTMKKEVERDQFELMDFLRTQLNNHHIQLK 591 Query: 588 IVEDDNPAVR---TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 I ++ A + TP E Q + + I LR+ FD EL Sbjct: 592 ITVNEETAKQFAFTPEEKYQKLR-----------EKNPAIDLLRKTFDLEL 631 >UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S8R6_9ACTO Length = 970 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 181/621 (29%), Positives = 270/621 (43%), Gaps = 24/621 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQE V L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG CD+CR + + G +D+IEIDAAS V+D R+L + +APAR Sbjct: 60 SLNCEQGPTPEPCGQCDSCRGLAPDGGGSIDVIEIDAASHGGVDDARELREKAFFAPARS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + Sbjct: 120 RFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLF 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + +R LE + E + EP L+ RA GS+RD+LS+ DQ IA +G V Sbjct: 180 PPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGPEGVGYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ A G + ++L L + ++Q Sbjct: 240 AALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEAGHDSRRFASDLLERLRDLIVLQQ 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A RM A+ + P + + G E+ R+ +E+ Sbjct: 300 VPDAAARGLIDGPADQIERMAAQAQRLGPATLSRCADIVHNGLVEMRGTTAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAP----------VAPTAVMTPTQVPPQPQSAPQQAPTV 403 R L + A PTQ +AP Sbjct: 360 ARMLLPGADDSSGGLLQRLERMERRLTLGGAELPPAAADPAHPTQTQGVRPAAPAPGAAA 419 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 S A A +A + A A P + A D A P P Sbjct: 420 AAVHADSAGTPAAAGAPTGAAAARAAAAAAVGARNAAPGSRPAPAGTEPAGDPEAASPAP 479 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE---- 519 +A E+A A A P + P A++ Sbjct: 480 AAPERAAVDPAASGSPAAASDAPAAARRPVPPSAVMPDPATPEPPRPGAANPGALDAVAV 539 Query: 520 RDPWAAQVSQLSLP-KLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 R W V +++ K + + +A + + + L ++S+ L +AL Sbjct: 540 RRVWPEVVGKVNRSNKRIAALMRDAVVRDLDGDTLVLTVKSTVLAKMMADHAAVLTDALY 599 Query: 578 MLKGSTVELTIVEDDNPAVRT 598 G ++ + Sbjct: 600 EELGGRWQIRCEVAGERGASS 620 >UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q609A7_METCA Length = 547 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 223/399 (55%), Positives = 279/399 (69%), Gaps = 2/399 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ LARKWRP F +VVGQEHV+ AL + L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MLYQALARKWRPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE A PCG C CRE+++GRF+DLIE+DAASRTKVEDTRDLLDNVQYAP +GR+ Sbjct: 61 ALNCEDRQGANPCGRCLICREVDEGRFIDLIEVDAASRTKVEDTRDLLDNVQYAPNQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQK+PVT+LSRCLQF+LK L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRCLQFNLKRLTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR Q+ IL E I EP A + LARAA+GS+RD LSL DQAIA G+++ VSAM Sbjct: 181 EQIRAQMAQILASESIDFEPAATKALARAAQGSMRDGLSLLDQAIAHCGGRLTNTGVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ + +EA+ E+ + ++A+ A +++ ++ ++L +LH+IA+ Q +P Sbjct: 241 LGTVSREPVYGALEALAESRADELLAVSATLAEFSPDYQDVVQQLLAILHQIAIAQFAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D R+ LAR + P D QLYYQ L G+K+L APD R G EM LLR LAF Sbjct: 301 AIRQD--DEAERVLTLARCLTPEDTQLYYQIALQGQKDLQLAPDPRDGFEMLLLRMLAFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 P P + + AP T + P + + +Q Sbjct: 359 PHSAEAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQ 397 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 2/182 (1%) Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 A + A +A + ++ A + + + Sbjct: 362 AEAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQAPPPAAAEASSSGASPWTTSDALN 421 Query: 523 WAAQVSQLSLPKLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG 581 W + + L + Q+A + +++A L L Q ++ L AL L G Sbjct: 422 WPRMIEAMRLAGMTRQLASHCVLRTLTEHACELALDPRQAQIHTPTVTSNLETALQKLLG 481 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 ++LTI ++ TP Q E+ +A I D + L+ F A++ S R Sbjct: 482 RPIKLTIR-CESLDAETPAAADQRAQIERQREAELEIENDATVHALKDMFGAQIVAGSTR 540 Query: 642 PI 643 P+ Sbjct: 541 PL 542 >UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax=Bartonella RepID=A9IMY3_BART1 Length = 646 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 177/643 (27%), Positives = 297/643 (46%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P V ++C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G VS V Sbjct: 189 IEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVSAAEV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPVLSRNWQMLLKGLQEVNQTARPLQATEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 +P + + + + T V + + Q T+ + ++S Sbjct: 369 LAH-TADLPTLDEALKKLTQEKTPLTLVTNSSHQEAISVNNITQETTIDVHASSSVSNTL 427 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + +P +P N + + + + ++ +K A Sbjct: 428 PNQ------SDLKTSLQPPLDHSLKPENFVKNKTHDNAKAQEVIEILETSQSTDFSKNIA 481 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + V Q E + PK L H+ S + L Sbjct: 482 ---NLSHSVTQPVEEITEPKTLVINSLHDIVKLAEQH---------------SDVPFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 V++ + L L + ++K+++ + + Sbjct: 524 VKEFVH--PVSFETGRITLRLSENTPQFLAHDIEKKISQWARKRY------VVTFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESVAIQKTLFSHA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thiomonas intermedia K12 RepID=C7I1D0_THIIN Length = 612 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 233/648 (35%), Positives = 323/648 (49%), Gaps = 50/648 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ LARKWRP++FA +VGQ+HV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MTSVALARKWRPKSFASLVGQDHVVRALTHALDHDRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC + G+T+ PCGVC C EI+ GRFVD IE+DAAS VED LL+ Y P Sbjct: 61 ALNCTGPDGQGGVTSQPCGVCPACTEIDAGRFVDYIELDAASNRGVEDMTTLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHMLS H+FNA+LKTLEEPP++VKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLSNHAFNAMLKTLEEPPDYVKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+ +L E++ + AL+L+ARAA GS+RDALSLTDQA+A G+V T+ Sbjct: 181 KQMMPGAIVGHLQQVLQAENVPADDAALRLIARAAHGSMRDALSLTDQALAYCAGRVETE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLGT+D L +++A+ +G ++ + ARG+ + A L E+ LL IA++ Sbjct: 241 AVQQMLGTVDRSDLLLILQALASQDGVALIHQADALEARGLSFGAALEELAALLQTIALL 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 QL P A D + LA + P +QL Y T+L GR EL APD R G MTLLR Sbjct: 301 QLVPQAADADDP-QHEALVALAAQLSPELVQLAYTTVLHGRNELSLAPDDRTGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P + P +P A LP+ + Sbjct: 360 LLAFAPVIAGSVPSLPPGGLA----------------------------LPKAAAPASPP 391 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q A + + + +A A PV +A E A Sbjct: 392 SQSAAAQVAAQREQPATKSATPVQTAAKAMPRTAATLSAPLAPAAPVLAAEEAPATSYAA 451 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T P L+ + + + A Q L + Sbjct: 452 KPEPQTQPQPTPPRPADIKPPLQITPHIASDTDWPTLVQRLDVPAGLPRALAQQSELVAM 511 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 L + + Q L G+ KL A+ + G + L + Sbjct: 512 ------------QGMDWLLRVPNEQ--LTRAGSLDKLQTAVRLALGQDIVLRAEAGEVT- 556 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + ++ + A A +I D +Q L A++ S++P+ Sbjct: 557 -DSVMQRDARAKAQAQADAEAAIRNDPLVQQLMHDLGAQIVPGSLKPM 603 >UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobacteria RepID=Q31PS7_SYNE7 Length = 652 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 162/414 (39%), Positives = 232/414 (56%), Gaps = 8/414 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQE + L+ L+ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC+ TA+PCG C+ CR I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RFKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L+ I +E I EP A+ L+A+ A+G LRDA SL DQ + V+ +AV Sbjct: 181 PLQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQ-LGLLPPPVTPEAVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG + + Q L L+EA+ + E ++ LI + RG E +L + + + + + Sbjct: 240 DLLGAVPERQLLQLLEAIAANDPEALLTLIRQLLDRGREPLTVLQNLTAFSRDLLIARTA 299 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L A + A P I Q L ++ R+ +E+ LL Sbjct: 300 PQRRDLTTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVALLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 L P P P APV + VP + S+P V +P + Sbjct: 360 L---PSAQAPVTTAPPAIAAPVTRPVSIPAAVVPAETPSSPAAVAPVAIPVAPA 410 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 129/454 (28%), Positives = 226/454 (49%), Gaps = 2/454 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP+ F DVV QEH+ L N + ++ HAY+F+G RG GKT+ A+++A+ + Sbjct: 2 HIALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I + +D++EIDAAS T V D R + D V+Y P+ + +V Sbjct: 62 NCLNPKDGNPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKRRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATTD QK+P TILSRC +F K + V+ Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ ++ E I+ + +AL L+++ AEG+LRDAL++ ++ + + D +S + V+ +LG Sbjct: 182 IYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDEHISYKFVANLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + A+VE + + + ++N G++ L E + +L +++L + Sbjct: 242 VTSTEIVKEYLNAIVENDSNKGLRVVNRLWDEGMDVNTFLEESIKILRNALILRLGAQNV 301 Query: 303 GNDMAAIELRM-RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 DM + L+ + I + L+ ++ + ++ +E+ ++ Sbjct: 302 LLDMMDEDKSFVTNLSNLLDSNRIVSVIKMLIDTANQIRWTRFPKVLLEINTIKLCDMQM 361 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + P+ + + + E + ++++ Sbjct: 362 DTSFEGLNERVKKLEIKLSQILENPSLLQSLKT-EKTLSLSTAAGEKSGSSEVNKEKMLL 420 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 A A L ++ Sbjct: 421 PDADVSEVLERWAEVKEAVKEEKPGLSQVLQSAS 454 >UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match) n=3 Tax=Frankia RepID=Q0RT17_FRAAA Length = 1016 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 155/477 (32%), Positives = 224/477 (46%), Gaps = 10/477 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEQGPTPEPCGVCDECVGIRTGASMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 +R L I +E + +P L L+ RA GS+RD+LS+ DQ +A + D + A Sbjct: 180 GVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGADDDGLHYDRAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ +G + ++++ + G + ++L L + ++ P Sbjct: 240 LLGMTDGVLLDETVDALARHDGAALFTVVDKVVSAGHDPRRFATDLLDRLRDLIIMAAVP 299 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A L + RMR A + P ++ L G E+ R+ +E+ L Sbjct: 300 DADARGLLESFSPDQIDRMRAQAAAVGPAELSRTADVLHGGLVEMRGTTSPRLMLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL P + +V+ ++ P ++ Sbjct: 360 RALLPAASAD---PAALLTRLERLERRSVLAAPDSAAAHPASAPGFGPDPAAGSSPFGGV 416 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 R A A A P A + P + + AP Sbjct: 417 NGPDGPRGMPGPPGPDEAAAPARTASPARPAPAHSARAAAAPASQGPASGSWDAAPV 473 >UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 Tax=Actinomycetales RepID=C7Q5N1_CATAD Length = 863 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 160/557 (28%), Positives = 230/557 (41%), Gaps = 22/557 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 20 LALYRRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAYLFSGPRGCGKTTSARILARCLN 79 Query: 64 CETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +C E+ G +D+IEIDAAS V+D RDL + +APA RFK Sbjct: 80 CEQGPTPTPCGTCRSCVELANGGSGSIDVIEIDAASHGGVDDARDLRERAFFAPAASRFK 139 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 140 IYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSRTHHYPFRLIPPG 199 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 +R L I E I EP L L+ RA GS RDA+S+ DQ +A D V+ + + Sbjct: 200 VLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVLDQLLAGADENGVTYAMATGL 259 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LVEA +G V L+++ G + L ++L + ++ Sbjct: 260 LGYTDAALLDRLVEAFAGNDGAAVFGLVDQVVESGHDPRRFLTDLLERFRDLVVLNAVTD 319 Query: 301 -----ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 AL + RM AR+ +++ + G E+ A R+ +E+ R Sbjct: 320 AGAARALIDVPDDQFERMAGQARSFGASELSRAADLVNTGLTEMRGATAPRLLLELVCAR 379 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ-------QAPTVPLPET 408 L S P+ + P Sbjct: 380 VLLPGADDAERGLVARVDRLERRGVVLGAAAPAPMAPMGSGPRVVEDEYDEPPVRRPSAA 439 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS---- 464 + A+ G + AT + E+ + Sbjct: 440 GAGAGASVPAGSVPSGGNPQNAPDNQQATGGGSLGTPPWEQGGGPSAANSGGGAEQSAAN 499 Query: 465 ---ALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 A A W+ A A E + + AA + Sbjct: 500 SGGAPNPAAGPLGTPPWEQGAGAPAAANANANANNNANANAPEPSSTGSGPAAATSQGAL 559 Query: 522 PWAAQVSQLSLPKLVEQ 538 S +Q Sbjct: 560 GTPPWESGAPNAGASQQ 576 >UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q394_9BACT Length = 558 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 138/423 (32%), Positives = 217/423 (51%), Gaps = 1/423 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR++RPQTF+D+VGQ ++ L N + R+ HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSYVVLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC VC+ C+ I +G +D++EID AS +++ R++ NV +AP+R R+ Sbjct: 61 ALNCVNGPTDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFAPSRARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++Y+IDEVHML+R +FNALLKTLEEPP HVKF+ ATT +LP T+ SRC +F K + V Sbjct: 121 RIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I E E AL +A+ A+G LRD+ S+ DQ + D V++ V+ + Sbjct: 181 NDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFCDDNVTSADVNYV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DDD+ S+ E V + + ++++ G + ++L L + + Sbjct: 241 LGYIDDDKIYSMFECFVNKDTSGALRIVDDILNEGKTPAEFIDQLLLRLRDLLVFSSCGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ + Q L + R + +R+ EM +++ Sbjct: 301 EAVWAEYDES-FIQRFEKSFSGDTLMYMIQMLSVMRIRSTDSLLQRISAEMAIIKLCRME 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + P + + + E + + + Sbjct: 360 SIGALSGLIERITTLEEKLEQVDNIPGKRGSAILLPAESFARQTVSEKSIEEGDVIPPAK 419 Query: 421 RVQ 423 + Sbjct: 420 EEK 422 >UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKL9_9BACT Length = 534 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 137/399 (34%), Positives = 212/399 (53%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARK RPQ F ++ GQE V+T L N + +GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 1 MSYIALARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTSAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + + PC C+NC EI G +D++EID AS +++ R+L + V++ P + +F Sbjct: 61 AVNCLEPVGSNPCNKCENCTEITSGTSMDVVEIDGASNRGIDEIRELREAVRFLPVKCKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP++V F+LATTDPQ+LP TI+SRC ++ + Sbjct: 121 KVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRCQKYDFNKIPF 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ E I ++ AL L+ R ++G +RD+LSL DQ IA G++ Q+ S + Sbjct: 181 EIMYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLLDQIIAFTGGKLDEQSTSFL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L +++ E + I E + +G+ + ++G + M ++ Sbjct: 241 LGFSEKSLVDKLFALIIKEQPEEIPDAIEELSGKGVNFAFATETLIGHTRNLLMQLITKK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +EL + + +Q +L + + E + +A Sbjct: 301 ENKELTSKENDYYKELVKNTSEQQLYALFQVFQKLLNDLKFFSFEQYIFEFGMYKAANIG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + S V P + Sbjct: 361 SVISSKGLASQTSSDTTGRAATVKKPVAETSSKPTLSST 399 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 4/161 (2%) Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 ++ + + T + L++ +E + V Q L + Sbjct: 364 SSKGLASQTSSDTTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIPGSLSSMLG 423 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS----MLKGSTVELTIVEDDNPAV 596 +D + + S ++ + + + +AL+ S ++ V + + Sbjct: 424 HGYIVHIADKVLTIGFSSEKKFYFDFVNRAQNMQALNRIIPAAFNSIDQVKTVIEQDTKK 483 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 ++ +E +Q I + R+ D +Q + R FD +L++ Sbjct: 484 KSIVEKKQTIETFHEKKIRQEAKEDGLVQKIIREFDGKLED 524 >UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bacillus cereus group RepID=B7IZ38_BACC2 Length = 548 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 144/408 (35%), Positives = 220/408 (53%), Gaps = 9/408 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP F++++GQ H+ + N L L + HAY+F+G RG GKT+IA+L+A L Sbjct: 2 YQALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE+ PC C C+ I D++EIDAAS VE R++ + V YAP G++K Sbjct: 62 NCESLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLKTLEEPP+HV F+LATTD K+P TI+SRC +F + + Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGPR 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 I +L H+ +E + E ALQLL A+G +RDALSL DQ IA + ++ VS + Sbjct: 182 DIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSEV 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + ++ + + +++ N ++ LIN+ G E LL +++G L + + + Sbjct: 242 VGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFEV 301 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 N AI + EL +Q+ + L + E+ ++ + ++ +E+ L++ Sbjct: 302 KEDNITTAILNSKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQLAT- 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + E V T P +PTV P Sbjct: 361 -----EAQEENRLIKKINELEKRVRELTSSGSVPVRPKSFSPTVQQPA 403 >UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ85_9FIRM Length = 525 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 150/416 (36%), Positives = 220/416 (52%), Gaps = 4/416 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R+WRPQ FAD+VGQ+HV L N L R+ HAYLF G RG GKTS A++LAK + Sbjct: 2 YQALYRQWRPQFFADMVGQQHVARTLQNALEQDRLAHAYLFCGPRGTGKTSAAKILAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE G + PC C CR I+ GR +D+ EIDAAS +++ R+L + +Y+P R KV Sbjct: 62 NCEKGPSREPCNECAACRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPVEVRHKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHML++ +FNALLKTLEEPP V F+LATT+P KLP TI+SRC + + + Sbjct: 122 YIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQRLDFHLIGMTD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++++ + + AL L+A A G LRDALSL +Q +A +G +S + V A+LG Sbjct: 182 IAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSEGNISDEDVLAVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D ++++ + + L+ E AA G + + + + + Sbjct: 242 AVGRDVYYRFTDSLLRRDLAAALLLLQEVAAGGKDLHHFTRQAISYYRDLMVALTCGDDA 301 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+ + AR + I L E+ +A R+ E+ + R +A Sbjct: 302 VALGIAPDWAGRLHKQARQLGMGTIGHILSELHGLLNEVRWASRPRLLWELAIFRIMA-- 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P+ + E+P A V P + P Q Q+ P ET S R Sbjct: 360 PQAEDRQQELPVSKPADVKPDNTPVVKETPAQNSFPEQKRAAEPAGETASIENLPR 415 Score = 45.0 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 28/190 (14%) Query: 456 RVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 R+ A ++ P K A TPV+++ + K+A E A + A+ Sbjct: 356 RIMAPQAEDRQQELPVSKPADVKPDNTPVVKETPAQNSFPEQKRAA------EPAGETAS 409 Query: 516 EAIERDPWAAQVS--QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQK 571 W + + K + + + L + + ++ Sbjct: 410 IENLPRLWPRVLELVRKESVKTHALLLSGEVSSCDEKVLELQFSGPFHCEMMESAENRRS 469 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN--NIQTLRR 629 L + L + + V N + +Q EEK D I + Sbjct: 470 LQKVLKKVFAVEPAIRCVVGKNGS------LQQQQPEEK----------DPAELISSAVE 513 Query: 630 FFDAELDEES 639 F + +ES Sbjct: 514 IFGGRVIDES 523 >UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 Tax=Acidithiobacillus RepID=B5EJD9_ACIF5 Length = 572 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 234/477 (49%), Positives = 295/477 (61%), Gaps = 7/477 (1%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y LAR+WRPQ F D VGQE V++AL + L GRIHHA+LF+GTRGVGKT++ARLLA Sbjct: 1 MSAYLALARRWRPQHFDDFVGQEAVVSALRHALDSGRIHHAFLFTGTRGVGKTTLARLLA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCE G+++ PCG C CR I G FVDL+E+DAASRT+V++TRDLLDNVQYAP GR Sbjct: 61 KCLNCERGVSSNPCGECSACRSIAAGNFVDLLEVDAASRTRVDETRDLLDNVQYAPTAGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+T+LSRCLQF+L+ LD Sbjct: 121 YKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRCLQFNLRRLD 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V QI+ +L I++ E + E ALQ+L+RAA+GSLRDALSL DQAI G G V V A Sbjct: 181 VPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLLDQAIVHGGGAVRRDGVLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG DD L L+ A+V+ + +V A++ + ARG++ LL ++ LHRIA+ Q P Sbjct: 241 MLGRSGDDAVLGLIAALVDRDAAQVFAIVGDHLARGMDGPGLLDLVIEGLHRIALAQFLP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A +D A + +R I P +Q +Y LL R++ PD RM +EM LR L+F Sbjct: 301 ADPDDDGAEAVVHLR---GRISPLTLQSWYFLLLSARRDFALYPDDRMALEMAFLRVLSF 357 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA-PQQAPTVPLPETTSQVLAARQQ 418 P P + PT+ P++ P +VPL S+ Sbjct: 358 SGSASPDSPPAALPGGENRHPGESLPPTREFVMPEATSPLSDHSVPLLSIRSRDEVREPS 417 Query: 419 LQRVQGATKA-KKSEPAAATRARPVNNAALERLASVTDRVQA-RPVPSALEKAPAKK 473 G A + PAA R + A +A QA R P A+E A Sbjct: 418 PVATSGQRDADAGTAPAADWRRVLASLAVSPMIAEYLRYGQALRCDPEAVELAVEPN 474 >UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Tax=Cyanobacteria RepID=B1WS93_CYAA5 Length = 683 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 162/436 (37%), Positives = 234/436 (53%), Gaps = 15/436 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L+N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC TA+PCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPPE V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +E + L I +E+I E AL L+A+ A G LRDA SL DQ G ++ + V Sbjct: 183 LEAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGG-ITPEKVWD 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + LSL++A+ N E V+ + RG E +L + + + + +P Sbjct: 242 LVGAVPERDLLSLLKAINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAP 301 Query: 300 --AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L + + A I Q L +L R+ +E+TLL L Sbjct: 302 TRSDLVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P + E V + +P++ PQQ + E +SQ Q Sbjct: 362 ---PDACIAEVIVQSSNI-----PTQTKNNNNESKPKALPQQKTQSNIVEKSSQ--DKIQ 411 Query: 418 QLQRVQGATKAKKSEP 433 L + + P Sbjct: 412 PLSKPNQSVTKTSETP 427 >UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2P9_DESAS Length = 527 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 143/460 (31%), Positives = 237/460 (51%), Gaps = 11/460 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R++RPQ FA+++GQ H++ L N L RI HAYLF G RG GKTS A++LAK Sbjct: 1 MAYRALYREYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C + QG +D+IEIDAAS +++ RDL + V++AP G++ Sbjct: 61 ALNCHQIKGVEPCNKCSSCVSVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFAPTGGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPPEHV F+LATT+P KLP+TILSRC +F K++ Sbjct: 121 KVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFDFKSIGA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSA 239 E + +L+ IL + + P AL+L+ +AAEG LRDALS+ DQ I + ++S + + Sbjct: 181 EPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITFNNTAEISEEDIHN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT+++ SL+E ++ + + +I E G + + + + + + + P Sbjct: 241 LLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCVRDLLLQSIEP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ N + + L ++ ++ R+ +E+ L++ + Sbjct: 301 TAIKNFSRTD--------QIYSVEYLLALLDCLTELEPKMKFSSQPRVILELALIKFIYS 352 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 L + + + M + A Q + S+++ + Sbjct: 353 RRDHLL--QSINTKESTEIQNNQDMRVSLPSEVKLPADDQEKLLAENTDNSKLVKSYDLP 410 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + S + V + + ++ + Sbjct: 411 VAEKNEQRDNISINRVKNSWKLVLEEIRKAMPAIAVPLSD 450 >UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GJF4_9CORY Length = 796 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 162/611 (26%), Positives = 273/611 (44%), Gaps = 19/611 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E L+ RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTLVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAIE----LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AL + + + E + + + G +++ R+ +E+ + R Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ---VPPQPQSAPQQAPTVPLPETTSQVL 413 L+ P+ +P + AP AP V + Q +A QA P+ S Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPTAQPQAQQPVQPQQQSAPS 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A ++ Q Q + S+P + S P ++ Sbjct: 422 APVEEKQPRQYQEYGQPSQPEQRPAQPQAQQPVQPQQQSAPSAPAEEKQPRQYQEYGQPS 481 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + + + P ++Q+ + ++ + PE + R W ++ +S Sbjct: 482 QPEQEEHEVPELRQQWEAGRDEQPQQVESAPQEPETS--TVDVETVRAKWVDILNYISRE 539 Query: 534 K---LVEQVALNA-WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELT 587 K + A + D + L + + LN+ + +A+ +++ + Sbjct: 540 KKNTTARILLRGATLLDVRDGTLYLGILTGAIANRLNDAKHNADIVDAVKAETNASLAVE 599 Query: 588 IVEDDNPAVRT 598 V + T Sbjct: 600 CVLGNKIPAST 610 >UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 Tax=Legionella RepID=Q5X1E1_LEGPA Length = 556 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 225/558 (40%), Positives = 306/558 (54%), Gaps = 11/558 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+TF+ +VGQEH+ AL N L+ R+HHAYLF+GTRGVGKTS+AR+LAK Sbjct: 1 MSYLALARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC CD C IEQGR++DLIEID AS+T+VEDTRDLLDN+QYAP GRF Sbjct: 61 ALNCEKGITSEPCLHCDTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLKTLEEPP HVKF+LATTDPQKLPVT+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQFNLKHLPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I QL+ IL EE + E +AL +LA+AA GS+RDALSL DQAI S + ++ V + Sbjct: 181 ELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETKLLASDVKIL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D AL L++A+ + ++ L + A G ++ +L EML LH+I + Q Sbjct: 241 LGHTQQDYALLLLQALAKQEAPTMLVLSQQIIAEGGNFQYVLDEMLNYLHQITIYQCLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ELA+ D QL+YQ + GR+E+ AP +G MT+LR F Sbjct: 301 NNPLISP--KAEIKELAKQFSAEDTQLFYQIGIKGREEMHLAPTLAIGFNMTMLRMYTFK 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + + + T P P +P+ + T ++A Q Sbjct: 359 PASHVTTPPLAFEQNNKTCSLIIDDNT-----PAQNPIGIEPIPVTKATGNIVAYHQTQS 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 K+ S + + ++ A + + + Sbjct: 414 LSTDDKKSANSGESMNCDWNDIIPQLKLSGLALNAIENAEFLGKKEREITLGVQKGHQSL 473 Query: 481 TTPVMQQKEVVATP----KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 TP + A +K L + + E ++ + L + Sbjct: 474 FTPTTINRIETALAGYYKSPVKITLNSQDAVHASPAQQKEKATQEKQEQAEAALHADPVF 533 Query: 537 EQVALNAWKEESDNAVCL 554 +Q+ E N++ L Sbjct: 534 QQLKQEFSAELVKNSIVL 551 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 85/248 (34%), Gaps = 5/248 (2%) Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 P +P + E Q A QL G ++ A Sbjct: 303 PLISPKAEIKELAKQFSAEDTQLFYQIGIKGREEMHLAPTLAIGFNMTMLRMYTFKPASH 362 Query: 457 VQARPVP-SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 V P+ K + A P+ + V A ++ K +A Sbjct: 363 VTTPPLAFEQNNKTCSLIIDDNTPAQNPIGIEPIPVTKATGNIVAYHQTQSLSTDDKKSA 422 Query: 516 EAIERDP--WAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 + E W + QL L L NA + + + + L ++ + L ++ Sbjct: 423 NSGESMNCDWNDIIPQLKLSGLALNAIENAEFLGKKEREITLGVQKGHQSLFTPTTINRI 482 Query: 573 AEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 AL+ S V++T+ + +P + ++ +EK QA ++ AD Q L++ F Sbjct: 483 ETALAGYYKSPVKITLN-SQDAVHASPAQQKEKATQEKQEQAEAALHADPVFQQLKQEFS 541 Query: 633 AELDEESI 640 AEL + SI Sbjct: 542 AELVKNSI 549 >UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 Tax=Gammaproteobacteria RepID=A1WTL4_HALHL Length = 554 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 219/372 (58%), Positives = 268/372 (72%), Gaps = 1/372 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ LARKWRP+ F DV GQEHVL ALAN L+ GR+HHAYLFSGTRGVGKT++AR+LAK Sbjct: 1 MTYQALARKWRPRRFEDVAGQEHVLRALANALADGRLHHAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA PCG CD+CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGRF Sbjct: 61 CLNCEHGITAEPCGTCDSCRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQFHL+ L Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFHLRRLSS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 IR +L + EE + + A LARAA+GSLRDALSL DQA+A G+G V+AM Sbjct: 181 TLIRDRLLALAEEEGVTVDAGAAARLARAADGSLRDALSLLDQALAFGEGAARDDEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ L ++ A+ + +G ++ A +++ L E++ +H +A+ Q P+ Sbjct: 241 LGAIERRHVLEVLTALADGDGAALVTAARHMAEVAADFDEALAELVATVHSLALAQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+G+D R+ LA I D+QLYYQ + R++LPYAPD G EM LLR AF Sbjct: 301 AIGDDEPE-RDRLLALAERIDAEDLQLYYQIGVNARRDLPYAPDPATGFEMALLRMHAFR 359 Query: 361 PRMPLPEPEVPR 372 P P P Sbjct: 360 PAEGAPRVAAPT 371 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 7/133 (5%) Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQ 569 A+ A + W V L + +A + W V L L S +LNN + Sbjct: 420 AEGATDEDAVARWTQIVG--GLSGPLRMIAAHCEWVGREGARVILRLDESHEYLNNAERR 477 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 ++L AL G T+ L I P TP + +E+ A+A +++ D +Q L Sbjct: 478 ERLQTALGEAFGETITLQIDIG--PTRWTPAMAERQQAQERQAEAEQALAGDPALQGLCE 535 Query: 630 FFDAELDEESIRP 642 FD +L +RP Sbjct: 536 AFDGQL--HGVRP 546 >UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBX8_THET1 Length = 550 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 157/471 (33%), Positives = 238/471 (50%), Gaps = 13/471 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R QTF ++VGQEHV L N + G+I HAYLF G RG GKTS ARLLAK Sbjct: 1 MS-QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + T PC C C I +GR VDLIEIDAASR KVED D+++ V +APA R+ Sbjct: 60 AVNCLSEGT-KPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP H F+LATT+ K+ TI+SRC +F + + Sbjct: 119 KVYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITP 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L I E+I + AL +A+A+ GSLRDA+S+ DQ GD +++ + V + Sbjct: 179 REIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +D + V A+++ + + ++L+ + + G++ E++ L + +++ Sbjct: 239 LGIVGEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKAYNQ 298 Query: 301 ALGNDMAAI--ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + A + + + + + +E+ + AL Sbjct: 299 NASKAGIERVSLQAISDQASMVSIGRLHEITEKFSTLDYTIRTGSYGYLPLELAAV-ALT 357 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P E RQ P + +V + + T+ A + Sbjct: 358 NKDSQPYERTENQRQQPNPAHTNSKSVIHRVEEVAEDVKDAISDIVAKVTSKNDAALPE- 416 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + +SEP R + L+RL + + +VQA Sbjct: 417 -------AQTSQSEPITLDRVQANWQRILDRLKASSLKVQALLKAGRPVAV 460 >UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, putative n=2 Tax=Treponema RepID=Q73K31_TREDE Length = 612 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 178/642 (27%), Positives = 284/642 (44%), Gaps = 65/642 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQV A + RPQ F D++GQE V L + G+I HAYLFSG RG GKTS AR+LAK Sbjct: 1 MEYQVTATRRRPQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TPCG C +C EI G +D+IEID AS T V D R + D + + P R+ Sbjct: 61 VLNCAEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ K+P TI SRC QF+ K + + Sbjct: 121 KIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFNFKLVSI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E ++ L E I+ + AL +AR A GS+RDA +L DQ A DG ++ + + Sbjct: 181 EILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSDGHITFEKIHEK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LV A V NG+ +++++ GI E ++ + + +V+ Sbjct: 241 LGLTGVDSINKLVSACVAKNGQEALSILDGILQGGISVEQVVSDCADYFRSLLLVKHGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF- 359 + +++ + I+ +L K+L ++ D+R +E+ + R Sbjct: 301 KEALIGQRADRFPQDILQGWEAVQIERALSIMLQLFKDLRFSIDQRYELELAVSRLSWLG 360 Query: 360 --HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV--PLPETTSQVLAA 415 L +S T V T +P + +S P+++P T Q A Sbjct: 361 DYVSPADLKTAFDAAKSLISSRRTDVETGRPLPHREESRPKESPRPFDNAGSLTEQFKAV 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 ++ ++ T+ K E + P +N + E+ ++ + Sbjct: 421 LRRDNKLDVFTEKKNEEKQPVSNNVPSDNVSFEK-------------KDEAQETVLQTVR 467 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 A V + KE + K + + W Sbjct: 468 SVENAFNNVEELKEPLIEALLEKSGILSSAVGQSK-----------DWIL---------- 506 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 ++++ L RSS + + + + +++S + G ++L + E P Sbjct: 507 ------------KEDSLTLFARSSFDYTLIQKQKDTVIDSISEITGKKIKLILKEYIPPQ 554 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 +E E++ I+T+ F ++ E Sbjct: 555 PENKVE--------------ETVKEPEKIRTITDVFMGKIVE 582 >UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 Tax=Frankineae RepID=A8KYB1_FRASN Length = 855 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 175/611 (28%), Positives = 256/611 (41%), Gaps = 55/611 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL + L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTEALGHALRSGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEKGPTPEPCGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 +R LE I +E + EP L L+ RA GS+RD+LS+ DQ +A +GDG +S + A Sbjct: 180 GVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVLDQLLAGAGDGGLSYERAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ E +G + +++ + G + ++L L + +V P Sbjct: 240 LLGMTDGILLDETVDALAERDGAALFTVVDSVVSSGHDPRRFATDLLDRLRDLIVVAAVP 299 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A L RMR A I P ++ L G E+ R+ +E+ L Sbjct: 300 DAVERGLLEAFSTDQVDRMRAQAGRIGPVELSRTADVLHAGLVEMRGTASPRLLLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL P A P + + + ++A + Sbjct: 360 RAL---------------------LPGAAGDPAALAVRLERLERRAVVGGGAGAGTTPTG 398 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + PA + A + Sbjct: 399 GAEVGGATHADARFGGARPADGGPG-----------FGGAADSAHGQAAAHAPAPAAHTQ 447 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 R + L A + + E+ A + + Sbjct: 448 TARPASPARPAMPAAAAPGGGGLDAAALNARWDEVLALAVQRSRRTHAILKDYA------ 501 Query: 535 LVEQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + E + V L + + + LA L+ G T +TI Sbjct: 502 --------SVAEVRGDEVVLAFSAPAMAKMFGQGNNVEILATLLAEKFGGTWRVTIGGGP 553 Query: 593 NPAVRTPLEWR 603 + P R Sbjct: 554 GSSGGRPQAPR 564 >UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWA6_9DELT Length = 670 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 184/656 (28%), Positives = 276/656 (42%), Gaps = 38/656 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA K+RPQTFA V GQ+ V L+ + R+ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLAAKYRPQTFAQVAGQDMVKAVLSRAAAEDRVAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC CD CR+I QG VD+ EID AS VED R L +N+ YAP GR+ Sbjct: 61 ALNCRHAPGPEPCNQCDQCRKITQGSHVDVTEIDGASNNSVEDARALRENIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HMLSR +FNALLKTLEEPP V F+ ATT+ K P+TI+SRC F + L Sbjct: 121 KVFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQHFVFRHLGE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +LN+E++ E A++L+AR A GS+RD++SL DQ +A G +++ + Sbjct: 181 DALVQHLSQVLNKENVPFEEGAVRLIARRAAGSVRDSMSLLDQTLALGGDNLTSAVTREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ + V L +G++ + E+ G L + +++ Sbjct: 241 LGLAGQELSADLFDALHARDCAAVSQLCAGLFRQGVDIGFFVRELAGHLRDLFLLRQGGD 300 Query: 301 ALGNDMAAIELRM---RELARTIPPTDIQLYYQTLLIGRKELPYA------------PDR 345 A+ + + + LA + +Q +L ++ + Sbjct: 301 AVAPTLGLPGEEILFWQGLAPRFSAGHLHAAWQMVLDAQRGIVQNPEPAAALELLLLNLA 360 Query: 346 RMGVEMTLLRA-LAFHPRMPLPE-PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 + + L R A P P+ P RQ +P+ P + V A + Sbjct: 361 LLPQLLPLERMDSAPAPAAPVQGHPGHDRQEGSPLPPRDMGHAAPVQAPAARAREHGTPA 420 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 A + + + A+ A A +A E A + +A Sbjct: 421 EKSAAAGSSEPAPEPAPSRRPGSCARPQREAPARQATSRPARVTETPAPKAAQPRAEAPA 480 Query: 464 SALEKAPAKK---EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE- 519 P++ EA A P++ A A TP + A Sbjct: 481 HPEHVGPSESGMIEADDIPAAAPIIPVAPARPAAPAAPVAPAAPATPPVPPAAPAVETRP 540 Query: 520 ---------RDPWAAQ----VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN-- 564 R W A +L + Q+ L S CL L L Sbjct: 541 TAPAAAAGFRPDWQAFCDFCARRLENGEAAPQLHLLRQLRASWEPDCLRLTPRAETLLHQ 600 Query: 565 NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + +L +AL+ L + RT E + QA ++ Sbjct: 601 TEKQRPQLEQALAAW--GAGHLRLEFVAPRQARTEAELIEEFRNRPEMQACLRLLN 654 >UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 Tax=Actinomycetales RepID=A8LYH3_SALAI Length = 834 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 169/605 (27%), Positives = 256/605 (42%), Gaps = 20/605 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQEHV L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C +CR + +D+IEIDAAS V+D R+L + +APA+ Sbjct: 60 SLNCEHGPTPEPCGTCGSCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFAPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + +R LE + E + EP L+ RA GS RD+LS+ DQ IA +G V+ Sbjct: 180 PPKVLRPYLEQLCQAEGVQVEPAVFPLVVRAGGGSARDSLSVLDQLIAGAGPEGVTYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ G + ++L L + ++Q Sbjct: 240 AALLGVTDSALIDEMCDALAAGDGAAAYATVDRIVGAGHDPRRFAADLLERLRDLIVLQR 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + RM A+ + P + + G E+ A R+ +E+ Sbjct: 300 VPDAAPKGLVDGPDDQIERMTAQAQRLGPGTLSRCADIVHDGLVEMRGATAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAP---VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 R L + +A T + P + A P + Sbjct: 360 ARMLLPGADDSAGGLLQRLERLERRLTLAGTDALPAAPAPSAGAAPAPSAGAAPALSAGA 419 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + + A A +PA + ++ A+ P P Sbjct: 420 ASASDDSPRRPPAAAVPASAEDPAGSLAMSGTSSGLAAARAAAAPAGSRADQPPGQPDRP 479 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + TP+ + T + AA R W V + Sbjct: 480 GPDASDASRRASARPAVMPDPVTPEPPRPGTTDRGTLDAAA-------VRRHWPEVVGLV 532 Query: 531 SL--PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 K E + L R L E+L G ++ Sbjct: 533 GRKSKKAAAWAREATVHEVDGETLVLAFRYPFHAQALANEPDLLIESLYEELGERWQIRC 592 Query: 589 VEDDN 593 Sbjct: 593 EVAGE 597 >UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 Tax=Porphyromonas gingivalis RepID=B2RJ68_PORG3 Length = 602 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 141/481 (29%), Positives = 232/481 (48%), Gaps = 9/481 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V A K+RP +FA +VGQE + L + + + HAYLF G RGVGKTS AR+ A+ + Sbjct: 5 YIVSALKYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAI 64 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC CG C++C+ ++ R +++ E+DAAS V+D R L++ P G++K Sbjct: 65 NCLERLPDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIEQANVPPQIGKYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP +V F+LATT+ K+ TILSRC F K + Sbjct: 125 IYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPA 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L ++ + E I E AL ++A A+G +RDALSL D+ +G ++ L Sbjct: 185 RIEQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANTIENL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 LD D L + ++ + V+ +++E A+G + + ++ + + M Q + Sbjct: 245 NILDYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGLASFFRDLMMAQDASTL 304 Query: 302 LGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA-F 359 + + + R ++A P + + + L ++ + +R+ +E++L+ A F Sbjct: 305 PLLEQSEVVIQRYVDMAARCPTSFLYQSLKILNACDQQYRQSNGKRLLLELSLMNIAALF 364 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMT-PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P P Q P +V P QP AP Q+ P P Q Sbjct: 365 SKGLTAPPPTHGAQHANPAVSGSVSPRPAPAKEQPSVAPSQSSVPPQPSIGEQRRQPETT 424 Query: 419 LQ-----RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + P A + L + + +++Q E + Sbjct: 425 APTITEDKPEQTKVVPPTRPMATSTVGSEGRFTLRGIRNKQEQLQNNIQEVRTEMTESFD 484 Query: 474 E 474 E Sbjct: 485 E 485 >UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWR2_METI4 Length = 618 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 144/461 (31%), Positives = 230/461 (49%), Gaps = 4/461 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV +RK+RP+ F++VVGQEHV+ L N + LGR+ HAYLFSG RG GKT++AR+LAK L Sbjct: 16 YQVFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSL 75 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G A C +I+ GR +D IEID AS V+ R+L + + P + R+K+ Sbjct: 76 NCADGPNADFDPDDPICLDIDAGRSLDCIEIDGASNNGVDQVRELREAAKSLPVQSRYKI 135 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML++ +FNALLK LEEPP HVKF+ ATT+P K+P T+ SRC +FH K + Sbjct: 136 YIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQRFHFKRIPRRL 195 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I +E I E +AL+++A +EG+LRDA DQ I+ ++ +V M G Sbjct: 196 IADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFYGEKIDQSSVQEMFG 255 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + + +G + ++ G + +LL LLH IA+ S +L Sbjct: 256 LVGIEPLCRLLTDLAQGDGRGALKEAHQLLESGKDPLSLLRSFRNLLHDIALYMASVESL 315 Query: 303 GNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 G ++ ++R ++ + + + + + +L YA + + E+ +L Sbjct: 316 GLELDPEELDQVRSMSSRLSLSFVINLLEAIDQWENKLRYALHKEVLFEIAILELSQLKE 375 Query: 362 RMPLPEPEVPRQSFAPVAPT---AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 ++ + E + + T PP P+ ++ LP+ + A Sbjct: 376 KVAIEELLAQWRVQGEESSENLKGEKTALSTPPLPEEQGKKEEETTLPQALFPSVQAGNP 435 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + P + + Sbjct: 436 PSGTKEQPQGGSLTPVGTQKKEQTAAELFSHSPPPLSPQEQ 476 >UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BXR7_BEUC1 Length = 841 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 169/685 (24%), Positives = 269/685 (39%), Gaps = 92/685 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFADV+GQEHV L L R HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFADVIGQEHVTGPLMAALRSDRATHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+C E+ +G +D++EIDAAS V+D RDL + +APAR R+K+ Sbjct: 64 AQGPTDTPCGTCDSCVELARGGPGSLDVVEIDAASHNGVDDARDLRERAVFAPARDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPP HVKF+ ATT+P ++ TI SR + + + + Sbjct: 124 FILDEAHMVTAQGFNALLKLVEEPPPHVKFVFATTEPDRVIGTIRSRTHHYPFRLVPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + L + E +A P L L+ RA GS+RD++S+ DQ +A D + A+L Sbjct: 184 LGDYLAQVSEAEGVAVAPGVLPLVVRAGGGSVRDSMSVLDQLMAGADSDGLDYDRAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A +G V +I+ G + + ++L L + ++ + Sbjct: 244 GFTHATLLDDVVDAFAAGDGATVFRVIDNVIESGHDPRRFVEDLLERLRDLIVLAAAGDQ 303 Query: 302 LGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + RMR A+ + + + G E+ A R+ +E+ R L Sbjct: 304 AVAVLRAIPEDQVERMRGQAQHLGAARLSRAADLVNAGLTEMTGATSPRLQLELLCARIL 363 Query: 358 AFHPRMPLPEPEVPRQSF------------------------APVAPTAVMTPTQVPPQP 393 P P V +S P + T+ PP P Sbjct: 364 --LPATPAAATGVEPRSAGTSGPASGSAPSGGAGSAAGAAPSRRETPAQPVPRTERPPAP 421 Query: 394 --------------------------------QSAPQQAPTVPLPETTSQVLAARQQLQR 421 ++ P+ A +V ++ AAR+ Sbjct: 422 ERGAPSRAAAEPPAASAARGERERGSAARAADEAGPESAGSVASGSAEAEPGAARRGAPA 481 Query: 422 VQGATKAKKS---------------------EPAAATRARPVNNAALERLASVTDRVQAR 460 + ++ E A + P + + E + + Sbjct: 482 TDAPARRQQPDARPGGGDDVEGRGAGAGPEAEEAPGSAEPPRSEVSDEEAPRSGEPAAGQ 541 Query: 461 PVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE- 519 ++ + E P + + P+ + +A Sbjct: 542 SRSEVSDEEAPRSEVPAEGPPHPQEAAAGRTPSEAPAAGPVSAAPQPDPSPLTGTDAATV 601 Query: 520 RDPWAAQVSQL-SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN----NRGAQQKLAE 574 R W + L + ++ + + S +A L L + L N + L Sbjct: 602 RRRWPEVLETLSGIRRVTWTLVAQNAQVASISAGVLELAFATEGLAVTFRNGTHAEALER 661 Query: 575 ALSMLKGSTVELTIVEDDNPAVRTP 599 AL G V + D P Sbjct: 662 ALHETLGLDVRVRATIGDAAPTSPP 686 >UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HBY1_ARTCA Length = 1202 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 154/513 (30%), Positives = 236/513 (46%), Gaps = 7/513 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 6 ALYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 65 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ +G +D+IEIDAAS V+D RDL + YAP R R+K+ Sbjct: 66 AEGPTDTPCGVCPSCVELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRDRYKI 125 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + E Sbjct: 126 FIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEP 185 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A +G + + A+L Sbjct: 186 LMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPNGLDYELAVALL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +VEA+ ++ V ++ G + + ++L + +VQ P + Sbjct: 246 GYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQAMPES 305 Query: 302 LGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A R++ A + ++ E+ A R+ +E+ R L Sbjct: 306 AQVILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELLCARIL 365 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + Q S A + P + + A Q Sbjct: 366 LPSSEQNERGIAARIDRVERRLNYSGHDAGAPAGQGASGTLGAGSAPHTPAAAAIPVAAQ 425 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 G + A + A+ A A + APA + + Sbjct: 426 AAPAAGGQASEPHAPAAQSPSAQDAAGQAASVQAPAEQAPAGQAQVPQAASAPAPADGPQ 485 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 + + + A P A + E +P A Sbjct: 486 GQTPRAPLASAQPQAGPDAPSRPATGESSPRTA 518 >UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1Z8_ERYRH Length = 600 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 140/488 (28%), Positives = 237/488 (48%), Gaps = 5/488 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RP +VVGQEHV+ L N ++ +I HAYLF G RG GKTSIA+L A+ Sbjct: 1 MSYQSLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE CG CDNC + G DLIEIDAAS V++ R L++ V+Y P G++ Sbjct: 61 AVNCEN-PDQVICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGE 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+++LN E++ E +L+A + G LR+AL++ +QAI D Q++ + Sbjct: 180 VDIAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D ++L +++ E E ++ I + + + L+++++ L + + + Sbjct: 240 NGIITDQDKINLFDSIREQQMEALVNQIAMMNEKSVNIDRLMMDLVSGLKDSIIYSHTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA T+ + + LL ++ ++ ++ E+ ++ F+ Sbjct: 300 DAL-VNENSLMFIHYLAETLQVHERLKVIEKLLSYTDKMKFSQNQSTYFEVAMVDV--FN 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A + PQ Q + P + + ++ + Sbjct: 357 SFSNKNVNLNQQTELTMTAEQIYRAENNIKPQKPKTSTQIEVIKKPAPVEESV-PFEEDK 415 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + E + + + V + ++ + +E R+K Sbjct: 416 DIDSVEEEIVIETQVLSEVSTEQTESFLTVDDVVRYMVTADKAIRIQDDASYQEIDRYKV 475 Query: 481 TTPVMQQK 488 + Sbjct: 476 DLKWARAS 483 >UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZE0_9FIRM Length = 473 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 143/423 (33%), Positives = 222/423 (52%), Gaps = 6/423 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L ++RP TF +V+GQE+++ N L G + HAYL G RG GKT++ARL+AK +NC Sbjct: 7 ALYTRFRPNTFDEVIGQENIIKVFLNQLKAGSVSHAYLLCGIRGTGKTTLARLMAKAVNC 66 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 PCG C+NCR I + +D+IEIDAAS V+D R+L+D V Y P+ KVY+ Sbjct: 67 LD-PQKKPCGACENCRSITEESHMDVIEIDAASNNGVDDVRELIDTVAYPPSVAEKKVYI 125 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDP K+P TILSRC++F L+ + + Sbjct: 126 IDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRCMRFDLRRITESDLV 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L + E AL+L+A AEGSLRDALS+ +Q +A +G ++ + V L + Sbjct: 186 KRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILEQVMAIDEGIITREDVLESLHAV 245 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AAL 302 D + + +++ ++ + E+ + N A G + + L ++L L + + ++S AL Sbjct: 246 GDGKIIEIMDGVLSNDLEKAIVTCNNAFDDGKDEKQFLNDLLIYLRNMMLAKVSGELDAL 305 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL-AFHP 361 N + ++ A + I+ ++ A R+ +E L++ P Sbjct: 306 INMHSDDINELKRQASGVSMDFIERAIFEIVRIIDLSKGASYPRILIEAGLIKVSNCLSP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + E + T ++P P A AP E +Q + + Sbjct: 366 DKSIKKEETKPSGIKKSSNVGKNTNDEMPVTP--AETSAPVAKSQEGMAQGKSEKDTTTE 423 Query: 422 VQG 424 Sbjct: 424 NNE 426 >UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUE6_9DELT Length = 561 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 140/445 (31%), Positives = 226/445 (50%), Gaps = 10/445 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L ++RPQ FA V GQ+ + + L+ R HAYLFSGTRGVGKT++AR+L+K Sbjct: 1 MAKAGLTARYRPQNFAQVAGQDFIKSILSRAAGQDRPSHAYLFSGTRGVGKTTLARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G PC C +C +I +G D+ EIDAAS T V++ R L ++V Y+P GR+ Sbjct: 61 AINCYNGPAPEPCNQCSSCEQITRGASPDVWEIDAASHTGVDNVRKLREDVAYSPMSGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS +FNALLKTLEEPP H F++ATT P+K P T++SRC + K L Sbjct: 121 KVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRCQHYVFKRLTH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L+ E +++E A+ LL R GS+RD++S+ Q +A GD + T V + Sbjct: 181 GELFAHLCFVLDTEGVSYEKEAVHLLTRRGSGSVRDSMSMLGQVLALGDEGLKTADVRRV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + L L++ +++ + R+ ++N +G++ L EM + ++ Sbjct: 241 LGLADQELFLRLMQHILDQDLVRLHEMVNYLLEQGLDLGFFLQEMAQCWRNMFLLSQGGQ 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A + RE+A + I +Q +L RK + + + + +E+ L Sbjct: 301 EAGKVLDLPAEEVEKWREMAGMFAASTIHAGWQMVLESRKSILGSYEPGISLELMLYNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +P+ AP T + A + ++ TS + Sbjct: 361 YLPELIPVSGY-------APEPQPRGETRQNTAEKKYPAGGEKKSLNNEYKTSSSPGEPE 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPV 442 + + + + A +P Sbjct: 414 VVTENFQEFQDRGEDKAEVQEEKPP 438 >UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMB1_9ACTN Length = 723 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 155/613 (25%), Positives = 249/613 (40%), Gaps = 53/613 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + G++ HAYLF G RG GKT++ARLLAK L Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAYLFCGPRGTGKTTMARLLAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C+ C+ I G D++EIDAAS T V++ R+ ++ YAP RG+ KV Sbjct: 62 CRKAPGQLPDGTCEECQLIAAGNHPDVVEIDAASNTGVDNVREEIISRANYAPVRGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ T+LSR +F A+ E+ Sbjct: 122 YIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSRVQRFDFHAIGNEE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + E ++ RAL+L+ R A G +RDAL+ +Q GDG VS LG Sbjct: 182 MLSHLQQVCEAESFQYDARALELIVRHARGGMRDALTSLEQLSVFGDGVVSLAIAQDFLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 + A+ + + + +N G + E+ + ++ Sbjct: 242 EASGSLLAHVSTAIAKRDVSTLFEQVNTLVDEGRDVLQFTRELAAHIRNAYVMAAVGPDT 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ + R + L ++ A ++R+ +E+ R Sbjct: 302 SALTITDDERTQLAQEVREYRSADRLARALTILGDASNQMRTASNQRLVLEIAFTRLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L V T Sbjct: 362 TSDLTLESLAERIADLEYQLADGVSRSTS------------------------------- 390 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 V ++ + ++P T PV + + ++ V +P+P+ + + PA+ Sbjct: 391 -DVDTSSVTEVTKPPVETAPTPVVEVSAQMTSAPVVEVPVQPMPTLVVEMPAQPAPLTPP 449 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV-EQ 538 + P + T A A EA W V Q Sbjct: 450 VSEPTPEVPSQAETSSHDASAR--------TPGNADEATLTRRWKQIVKQYREKAPAHGS 501 Query: 539 VALNAWKEESDNAVCLHLRS-----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + +N+ D + L L + L +++L + + G T+ ++ Sbjct: 502 LLMNSTLASDDGSNLLVLLPKGSEFASAMLGREEIKKELLTFIEPVLGMR---TVTYGES 558 Query: 594 PAVRTPLEWRQAI 606 + + Sbjct: 559 SLQNKAIADAERA 571 >UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alphaproteobacteria RepID=Q0BVJ3_GRABC Length = 686 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 180/561 (32%), Positives = 276/561 (49%), Gaps = 12/561 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLAR++RP+ F D++GQ+ ++ L N +L R+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 48 YRVLARQYRPRHFDDLIGQDALVRTLRNAFALNRVAHAFMLTGVRGVGKTTTARIIARAL 107 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 108 NCTGADGQGGPTADPCGVCPNCTAILADRHPDVVEMDAASRTGVDDVREIIEATRFRPLQ 167 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R KV++IDEVHMLSR++FNALLKTLEEPP HV F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 168 ARTKVFIIDEVHMLSRNAFNALLKTLEEPPPHVTFIFATTELRKVPVTVLSRCQRFDLRR 227 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 +D E + IL +E ++ P+AL L+ARAA+GS+RD LSL DQAIA D +S Sbjct: 228 IDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLLDQAIAQNDPGIPISEA 287 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V+ MLG D L L+EA++ + +A+ + A ARG + +L ++L L+H + + Sbjct: 288 QVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHTLTRL 347 Query: 296 QLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P A R+R LA + + +Q LL G E+ APDRR EM L Sbjct: 348 KTIPHLRTAPGMAEAERLRGSALADRLAMPVLGRAWQMLLKGIAEVEAAPDRRAAAEMVL 407 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 +R P E V P S+ A + ++ Sbjct: 408 IRLCYVADLPPPAELVRRLTGAPGTQQPGHQGGGGVAPSTPSSSPTASSTGFRAIAGGIM 467 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV--QARPVPSALEKAPA 471 + + S P + + S + + L + Sbjct: 468 SGGSGAATARQPHAMADSVPDVPVPVFHSFREVAQFVESRREAMLHAHLLHNVHLVRFAP 527 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 R ++ P ++ A + R ++++Q S Sbjct: 528 PVIELRLESNVPHTLPAQLAALLGEANGQRWTIALSSAPGEPTLAEQGRAAGESRLAQAS 587 Query: 532 LPKLVEQVALNAWKEESDNAV 552 +V + LNA+ V Sbjct: 588 NHPVVRAI-LNAFPGARLGTV 607 >UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococcales RepID=A9GQB3_SORC5 Length = 829 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 174/477 (36%), Positives = 243/477 (50%), Gaps = 11/477 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQ+F D+VGQEHV T LAN ++ R+ HA+LF+G RGVGKT+ AR+LAK Sbjct: 37 MSYVVLARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAK 96 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TATPC C C EI G VD+ EID AS V++ R L +++ Y PAR RF Sbjct: 97 ALNCVHGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDEVRKLQESLPYRPARDRF 156 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K++++DEVHMLS ++NA LKTLEEPP HVKF+ ATT+ K+PVTILSRC ++ K + Sbjct: 157 KIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRCQRYDFKLIGA 216 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA---SGDGQVSTQAV 237 + I +L +L++E I + AL LAR A GS+RDA+SL DQ IA + +++ + V Sbjct: 217 QAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEGV 276 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + +LG D L A+V+ + + ++ E A G + + + L L + + ++ Sbjct: 277 AKVLGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAKV 336 Query: 298 --SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 PA L + R LA D+ +Q ++ + R EM L+R Sbjct: 337 CEDPAPLLDLADEEVADTRALAARADADDLTRLHQGFSRAFDDIARSGQPRASFEMALVR 396 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P +P+ E P+ PQ P S AA Sbjct: 397 LARRPPLLPIDELLRRLGDLERRLNGGGGGGGGGGGAPERGPQ------RPGAPSSGAAA 450 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 ++ A AA N A + AR +A APA Sbjct: 451 PRRGAASAEAAPEDAHASGAAAAGAARANDAAAFHGAPAANGVARANGAAATGAPAN 507 Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 73/284 (25%), Gaps = 9/284 (3%) Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A + + A A + +P Sbjct: 537 AAANGVARANGAAAVYGAPGGSGVARAHGGMAANGGVVAGGTSAANVVPFVNGAPGVHGA 596 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 G ++ + + R VP + + A A R Sbjct: 597 ATSFASGGAAPAFAKAPPYASGAVAPAYRADSAPPPSPRGALYSVPQSAPQFVAPGSAPR 656 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--QLSLPKL 535 A P Q ++ + + ++AE + W A ++ ++ P L Sbjct: 657 SSAP-PSAQGPAPASSAPPSAQNPAPASSAPPPPAMSAEDLA--TWRAVIAAVRVQRPAL 713 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQ---RHLNNRGAQQKLAEALSMLKGSTVELTIV-ED 591 + A E + V L ++ ++ LA L G+ EL Sbjct: 714 ASVLEHAAVLELTPTRVALGYEANSFLSGQATEPASRDLLARVLGAHFGAPAELVFETIT 773 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 A + + A + ++ A+ ++ + AEL Sbjct: 774 RGSAGPSLAQVETAERKARVEAAKRAVADHPLVTAAIELLGAEL 817 >UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 Tax=Alphaproteobacteria RepID=A1B872_PARDP Length = 592 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 164/422 (38%), Positives = 243/422 (57%), Gaps = 8/422 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG Sbjct: 7 NYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKG 66 Query: 62 LNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LNC + G T PCGVC++C I +GR VD++E+DAASRT V D R+++++V Y A Sbjct: 67 LNCTGPDGQGGPTTEPCGVCEHCVAISEGRHVDVMEMDAASRTGVNDIREIIESVHYRAA 126 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 127 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLR 186 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + Sbjct: 187 RIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETTATQ 246 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V AMLG D + L L + ++ +A + A G + A+L ++ + H +++V+ Sbjct: 247 VRAMLGLADRGRVLDLFDMILRGAAAEALAELQAQYADGADPMAVLRDLAEITHWVSIVK 306 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++P AL + R + +A +P + +Q LL E+ AP+ M EM ++ Sbjct: 307 ITPEALDDPTIGPDERARGQAIAEKVPMRALTRLWQMLLKALDEVGQAPNAMMAAEMAII 366 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R +P PE + + + A + ++ P+ A A Sbjct: 367 RLTH-VADLPDPETLIRKVQASAAAGEFSRNAAPSAARGEAPPRAAAPRTPVAVRQDGSA 425 Query: 415 AR 416 A Sbjct: 426 AA 427 >UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2L1L6_9FIRM Length = 526 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 134/406 (33%), Positives = 212/406 (52%), Gaps = 3/406 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWR + F D+VGQ+ + + N +S RI HAYLF GTRG GKTS+A++LA+ Sbjct: 1 MSYTALYRKWRSRDFDDLVGQDAITRSFKNQVSHDRIGHAYLFCGTRGTGKTSMAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I +++ E+DAAS KV+D R + + V+Y P R+ Sbjct: 61 AVNCLNPKDGNPCNECANCKAILSNTSINVYEMDAASNNKVDDIRLIREQVEYPPVGMRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ + NA LKTLEEPPE+ F+LATT+P LP+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLTESAHNAFLKTLEEPPEYAIFILATTEPNALPITILSRCQRYDFRRIPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + I +L HI+ EEHIA E A+ +AR +GS+RDA+SL DQ + ++S + Sbjct: 181 DIIADRLRHIVEEEHIAIEEEAIHYIARMGDGSMRDAVSLLDQCASYDFQREISYEDTLK 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D ++ ++ E + + M L++E +G E ++L I + + Sbjct: 241 ILGAVDTAAFSQMIASLREKDIAKAMTLVSEVLEQGKELSQYTSDLLNYYRNIMLAKTVE 300 Query: 300 --AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A + ++ ++ +I + L ++ +A +R+ +E TL++ Sbjct: 301 KIDGLMDLSAENKKQLLSDGESLSMEEILRGIRLLTELLQQYRFARQKRVLLESTLVKLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 + P + + P Sbjct: 361 HPEMEGKTDALLQRLRELEEKMEKGSFLPVERTAFSKEENGDVPEA 406 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 218/384 (56%), Gaps = 7/384 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+V+ARK+RPQTF +V+GQEH+ ++ ++ +I HAYLFSG GVGKTS+AR++AK Sbjct: 4 NYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G T PCGVC +C +IE G +D+IEID AS +E+ R +++NV+ +P G++K Sbjct: 64 LNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH ++ +FNALLKTLEEPP HV F+LATT+ +++ TI SRC Q+ K+L +E Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSLGIE 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSA 239 + L+ IL++E+I ++ A+ L+A+ A GS+RD+ ++ ++ IA + +++ V+A Sbjct: 184 DLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVNA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + M+E + + + + ++ + ++ + + M++ Sbjct: 244 VVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIKSGI 303 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L ++ A +I+ +L + + A + R EM R L Sbjct: 304 DDIKLLEITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEM---RML 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPT 381 L P S + Sbjct: 361 LLLNTDNLIRPVDIISSNMQSVSS 384 >UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE8_9BACT Length = 890 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 182/653 (27%), Positives = 291/653 (44%), Gaps = 37/653 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRPQTF D+ GQ+H+ + L N + R+ HAY+F GTRG+GKT+ AR+ AK Sbjct: 1 MTYQVLARKWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAK 60 Query: 61 GLNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCET PCG C NC EI QG +D+IEID AS V+D R + + QY PAR Sbjct: 61 ALNCETPRADLNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIRQIREGAQYTPARCP 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+++IDEVHMLS ++NALLKTLEEPP H+KFL ATT+ ++ TILSRC + LK + Sbjct: 121 YKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAV 237 I +L+HI E++A E A+ ++R A G +RD LS+ DQ I+ G +S Q V Sbjct: 181 RNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSILDQMISFCSGNEIISEQDV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G ++ + A+++ ++ I+ A E L E+ L + ++ Sbjct: 241 IDVFGMSSSNELKLIASAILQNQAPALIEAIDTLAKAARNMEQLYSELFQLFRDVMILLE 300 Query: 298 SPA---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 SP ++ + ++ ELA+ +Q L ++ + ++R +E+TLL Sbjct: 301 SPQQARSILDLEEVEIQQLYELAQLANNKLLQKLLNGFLDYDGKIRHTLNKRTYLEVTLL 360 Query: 355 R------------ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP---QPQSAPQQ 399 R L + + P + +P + + Sbjct: 361 RIMKDAHSLRVEDLLKHIQTLRKQGNLQDLEGDLPPLSITQKKNESLEARSLRPATNAEA 420 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSE------PAAATRARPVNNAALERLASV 453 V P ++V A + Q + S+ A E ++ Sbjct: 421 LSIVKKPIIDTKVEAEVDTVNDTQNIGDSSASDTQNDYYEEDTAEETTPTVEATETEETI 480 Query: 454 TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 + V+ + P + ++ A + +A PV + +T + K H + L L Sbjct: 481 SAIVEDKESPEDALQTEVEEVALQVEAAEPVDNFQASPSTDQTPAKQERHSNSIALEQML 540 Query: 514 AAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLA 573 A E + + + + K ++ + + L S G + K Sbjct: 541 AIPTSENEDTLTKAETIFVQKDDPEL----------SKILLQPDSEDERNIETGVETKPD 590 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQT 626 S ++ V T V + + + + + QA E N+Q Sbjct: 591 AEDSEVQAEPVVETEVLPEQANEQANEQANEQANVQANVQANEQANEQANVQA 643 >UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=Q4JSL3_CORJK Length = 967 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 166/529 (31%), Positives = 249/529 (47%), Gaps = 14/529 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQ HV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQSHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + G +D+ E+DAA+ V+D R+L + YAPA R++V Sbjct: 62 VEGPTSTPCGKCESCVSLAPGGPGNLDVTELDAATHNGVDDMRELRERAFYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S FNALLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLAPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE +++ E + E L+ RA GS RD+LS+ DQ +A +G V+ A+L Sbjct: 182 MRGLLESVVSGEGVPVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYNRALALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ E + + A+++E G + ++L + +VQ P A Sbjct: 242 GVTDSTLIDRAVDALAEHDSAALFAVVDEVIDAGYDPRRFSEDLLDRFRDLLVVQAVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L N +RE A + + + G ++ A R+ +E+ R Sbjct: 302 FERGLVNAPEESRDVLREQAEKMGQATLTRCASLVNEGLAQMRGATAPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV---LA 414 M + ++ AV T S+ Sbjct: 362 LPAAGMTVEALAQRVEALEKGNGGAVGTGAGRAGSGAGGSGAGTRAGTGVRGSRAEMFAR 421 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 R+ Q + + + EPA A A+ V NA + L + + +P ++E E Sbjct: 422 RRKAAQDAAQQSASAQPEPAQAEPAQRVENAPEQNLTAGQEPAAEQPPARSVE----PPE 477 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 A + Q+ T + ++ E E E A + A A R Sbjct: 478 AVAENSPAKETAQEVSPGTAQGTERGTEPETAQETAEESPAIAEARRAR 526 >UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SL11_9FIRM Length = 540 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 113/369 (30%), Positives = 204/369 (55%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + R++RP+ F VVGQ H++ L N + G + HAYLFSG RG GKTS A++ A+ +N Sbjct: 5 QAIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C I PC C+NC+ I + + ++++E+DAAS +++D R+L + V Y P ++KVY Sbjct: 65 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK LEEPP+H+ F+LATT+ KLP TI+SRC +F K ++ I Sbjct: 125 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 + ++LN ++ E + L++ + G++RDALSL DQ +A+G +++ + ++ LG Sbjct: 185 VENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGL 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + L ++++ ++ + G ++++++ I +V+ L Sbjct: 245 VNLNMLFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFRNIILVKSIKKELT 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R E + ++ + LL ++ + + E+ +++ +F + Sbjct: 305 TLNDVEYKRYLEHSNKFEMDELIFILENLLDVEDKMKKSDMQNALAELLIIKICSFKRKK 364 Query: 364 PLPEPEVPR 372 E + Sbjct: 365 SEMEKRIET 373 >UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPA0_9FIRM Length = 743 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 143/510 (28%), Positives = 230/510 (45%), Gaps = 16/510 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+R TF +V+ QEH+ T L N + G HAYLF+G+RG GKT+ A+L+AK + Sbjct: 2 HLALYRKYRSATFDEVISQEHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCG C++C+ I G D+IE+DAAS V+D R L D V YAP R+KV Sbjct: 62 NCLSPVDGNPCGECESCKAIAAG-CPDIIEMDAASNNGVDDVRALRDEVMYAPTVCRYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP HV F+LATT+ K+P TI SRC QF +DVE+ Sbjct: 121 YIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQFRFSRIDVEE 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +L I +E++ A +L++R ++G +RDA+SL DQ I+ + + V G Sbjct: 181 STKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD-IDEETVRTTAG 239 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +L + + E N + +++E + + LL E+L + ++ + + Sbjct: 240 IAGTEHLFTLAQCIHEQNAPEALKILDELHNQSKDLMLLLDELLSHFRNLCILSATNSDF 299 Query: 303 GNDMAA--IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + +I L P R+ EM L+R Sbjct: 300 SLIPAGSGTRNDLARQTKEFTLGEIMRCMDILQDCIARTPKTAKRKTVAEMCLIRLCTPR 359 Query: 361 PRMPLPEPEVPRQSFA-----------PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 + + + P + + + SA P + Sbjct: 360 LDSDTSALSLRLEKLENRLDKLCDGEISIQPRTAVQTGESTEKHISAQSAKPVSVAGDRP 419 Query: 410 SQVLAAR-QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 ++A +++ + K+ + A T + S D + + Sbjct: 420 QDIIADTLNRIENKITSADDKQKDVTAPTAPVQQSGTERNAADSKPDWLFEGTGGADENA 479 Query: 469 APAKKEAYRWKATTPVMQQKEVVATPKALK 498 + ++A + P P+ Sbjct: 480 STGNEDAPPFDLDEPQASVAPPEPVPQEQA 509 >UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD6_9FIRM Length = 655 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 157/665 (23%), Positives = 282/665 (42%), Gaps = 43/665 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ+F ++VGQ + L N + ++ HAYLF+G RG GKTS A++LAK Sbjct: 1 MSYQALYRVWRPQSFDELVGQPLIAETLKNAVKNQQLSHAYLFTGPRGTGKTSAAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RDL D V+YAP++ + Sbjct: 61 AVNCPHQTDGNPCNQCELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKVRYAPSQATY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP V F+LATT+P K+P TI+SR +F + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQRFDFGRISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++++IL ++ I E AL ++ARAA G +RD+LSL DQA++ V+ Q+ + Sbjct: 181 ADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSYNRSAVTVQSALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L + + A+ +G + ++++ + G + + E++ + + S Sbjct: 241 TGSLSQLVYIDYLTALQAQDGPKALSILQASLQEGKQANRFVEELILFCRDLLLTLNSKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A +R+ + L ++ +A + VE+ + Sbjct: 301 NFTLLTEAELKPLRQAGDNC---FYYNLIERLNQALNQMRFATQADLFVEVATIELAQEV 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ + + A + +V AP +P + + ++ Sbjct: 358 ANEPV-ASGLESGTVADLVRQVQALEAKVRQLEAQLRAGAPAQAVPSPQAPAEDDQPRVP 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASV----TDRVQARPVPSALEKAPAKKEAY 476 R + A + + +N A + ++ + +++ P + A+ +A Sbjct: 417 RERPAGQRQAYHLDTDAIYAVLNEATRQDVSQLKSGWAAWLESLPPQDRVRLTGAEVQAA 476 Query: 477 RWKATTPVMQQKE---VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + + ++ V + L + +A + + W+ + Sbjct: 477 GPERILLAFKSQDFCGRVQQDADFVQELSRQLARHFDRPVALAFVLQSEWSQVRQTYKV- 535 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL--SMLKGSTVELTIVED 591 +++ + + + L + + S S ++ + Sbjct: 536 ----------LYDQAGGPIKIGAVAEPIRLALEAEPLEAEQTSPPSDDFQSLEQVMMDLP 585 Query: 592 DNPAV------------RTPLEWRQAIYEEKL-------AQARESIIADNNIQTLRRFFD 632 + P TP + +E L AQA + + F Sbjct: 586 EAPEASEPGTDLFGLPMETPEPAQPVADQEDLPTVDPVFAQAPDQDSLPPVVSQALALFG 645 Query: 633 AELDE 637 ++ + Sbjct: 646 QDVVD 650 >UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=B1VIS6_CORU7 Length = 1102 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 160/573 (27%), Positives = 253/573 (44%), Gaps = 14/573 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG CD+C + G +D+ E+DAAS V+D R+L D YAPA R++V Sbjct: 62 VEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYAPADSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FN LLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNYPFRLLTPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R L I+ +E E L+ RA GS RD+LS+ DQ +A +G V+ Q A+L Sbjct: 182 MRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGPEGVTYQRAVALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D EA+ + + A++++ G + +++L + +VQ P A Sbjct: 242 GVTDSSLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDLLDRFRDLLVVQAVPDA 301 Query: 302 LGNDMAA----IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + +R+ A + P + + G ++ A R+ +E+ R Sbjct: 302 FERGLVDVPAQEQDALRQQAEALGPATLTRCAAVVNDGLSQMRGATSPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M + ++ P S A P + + R Sbjct: 362 LPAAGMTVEALAQRVEALEQGTGVRAAGPMGASGGLASPAVGAGASPTGDASGLSSGKRY 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVT--DRVQARPVPSALEKAPAKKEA 475 + R + A+ S + A + + E + Q P + P + Sbjct: 422 ERPRRRKASAEAASAESGAAEPQNAVSQGAEPKGAQPQGAAPQQPEQPGNADAQPGQS-- 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 +A P + + + + + AA EA + A + Sbjct: 480 --AQAGAPAQSGQPGQQAADQSGEQADGQSAAQGAAPATQEATSQPEKPAVQETAEVA-R 536 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGA 568 +Q A NA +++ + ++ + Sbjct: 537 AQQPADNAQEQQGAEPAAQDVNAAAQSARQESN 569 >UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ruminococcaceae RepID=C7H4D6_9FIRM Length = 625 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 166/590 (28%), Positives = 266/590 (45%), Gaps = 18/590 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRPQ F DVV Q ++TAL N ++ GR+ HAYLF+G RG GKT+ A++ AK + Sbjct: 9 YRALYRKWRPQRFEDVVAQRGIVTALRNQIATGRVGHAYLFTGVRGTGKTTCAKIFAKAV 68 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PCG C+ CR I+ G +D++E+DAAS V+D RDL D Y P+ +KV Sbjct: 69 NCLHPQNGDPCGECEICRGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACHYKV 128 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ QK+P TILSRC ++ + E Sbjct: 129 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 188 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++E+I +E + +L++R A+G++RDALS+ D ++ V M G Sbjct: 189 IAQRVEYIAGQEGLELSGEGAELISRLADGAMRDALSILDTCAGVTA-KIDADVVRRMAG 247 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D + +A+ + +A + + + ++ + L E++ + + L Sbjct: 248 VTDRSYLFRISDALEAQDAAAALAQLAQLRQQSVDVKRLTEELIAHYRALMLAALPGGQA 307 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E E + + + L + + D+R+ +E+ L Sbjct: 308 LLSGVSPEEEKLYLEKGPRMGQREAIRAIRALGNALEHMTRGSDQRIELELALFSL---- 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ PVA AV P Q P+P ++ P V P ++ V + Sbjct: 364 ----SEPPQQVAVQAVPVARPAV--PAQEAPRPFASAPVKPFVCAPAASAPVQEPSVEPA 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +Q + +P +A +A E + P ++ R Sbjct: 418 PMQQSEPEPAPQPVEPPKAEAAASAEEELPPLPEEPPVTSEAPPPWDEPALAAPPQREAP 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP-WAAQVSQLS-LPKLVEQ 538 P + P+ K + K+AAE I P WA + L ++ Sbjct: 478 PAPAQEVPAAQPQPE-PKPEYTADPALNKPRKVAAEGINPFPQWAEVIKLLQEQDPMLYT 536 Query: 539 VALNAWKEESDNAVCLHLRSSQRHL--NNRGAQQKLAEALSMLKGSTVEL 586 + V + + R N+ +Q+ + + ++ + G V + Sbjct: 537 YLKKSKGYFDGTRVLIDGGKTFRDFIRANKESQKLIKKLIAQVSGVAVPI 586 >UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacteria RepID=DPO3X_BUCAP Length = 363 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 182/359 (50%), Positives = 258/359 (71%), Gaps = 1/359 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ+LARKWRPQ+F ++GQ++++ A++NG SLG+IHHA+L SGTRGVGKT+IARL+AK Sbjct: 1 MNYQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC C C+EIE+G +D IEIDAASRTKVE+ R++LDN+ Y P++ RF Sbjct: 61 SLNCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP+H+KF+LATTD +K+P TI SRCL F L L Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I + L+HIL + + AL++++ A GS+RDAL+L + A+ ++ + + M Sbjct: 181 EDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + A L + ++E + +++M L+N+ + G+EW+ +L+EM+ LH IAM++ P Sbjct: 241 LGIPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLEWQNILIEMMRFLHHIAMLKSYPK 300 Query: 301 ALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 E ++++A +IQL Y+ LL GRKEL ++P+ +MGVEM LL+A+ Sbjct: 301 IWNQIFIKNNENEIKKIAENNSKYNIQLCYKILLKGRKELFFSPNHKMGVEMILLQAIT 359 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 136/430 (31%), Positives = 208/430 (48%), Gaps = 3/430 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP+TF DVVGQEH+ L N ++ G+ HAYLF+G+RG GKT+ ++++AK + Sbjct: 2 YQALYRKWRPKTFDDVVGQEHITATLKNEVAAGKFSHAYLFTGSRGTGKTTCSKIVAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C CR I+ G +D++EIDAAS V++ R L + + P+ +++V Sbjct: 62 NCERPVDGNPCNECAACRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPSVVKYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HMLS+ + NALLK LEEPPEHV F+LATT+ K+ TILSRC +F + Sbjct: 122 YILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRCQRFDFHRIRSRV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I +E + A L+AR ++G +RDALSL D + G ++ QAV+ G Sbjct: 182 IADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASFGTD-ITVQAVTQAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +A + + + ++ + + ++ L +M+G + +V+ A Sbjct: 241 LAGQSHLFEIADAAIARDPAAALLVVGRLSEQSCDFSRLCEQMIGHYRNLMIVKTVREAD 300 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+R A I I L L +R +EM ++R Sbjct: 301 DLVQGTPEDLERLRTQAGGISLGAIMYALGVLQDAATSLTRTAFKRTELEMAIVRLCDER 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + A PP A A P AA + + Sbjct: 361 MGGGLEGVLDRLEKLEKAARLGAAQAPAAPPAQPEASGAATAPPKDSAKPVSAAAASKPK 420 Query: 421 RVQGATKAKK 430 G + Sbjct: 421 PAAGVAQVTP 430 >UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Bacteroidetes RepID=A0M2F5_GRAFK Length = 653 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 156/676 (23%), Positives = 289/676 (42%), Gaps = 64/676 (9%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + V ARK+RPQTF DVVGQ+ + LAN ++ + A LF+G RGVGKT+ AR+LA Sbjct: 1 MEHFVVSARKYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +N T P + ++ E+DAAS V+D R+L+D V+ P G Sbjct: 61 KMIN--QKETQDP----------NEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGN 108 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + Sbjct: 109 YKVYIIDEVHMLSASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRIT 168 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V ++ L HI +E + E AL ++A+ A+G++RDALS+ D+ ++ ++ QAV+ Sbjct: 169 VTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFSGNDLTRQAVTE 228 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D + + + ++E N +++ N+ + G + + + + + + Sbjct: 229 NLNVLDYDTYMEVTDLVLENNIPQLLVKFNDILSSGFDGHHFIAGLASHFRDLLVCKDQK 288 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + E ++ + + + + ++R+ VE+ +++ + Sbjct: 289 TIILLEVGEQTKAKYFEQSQKASHQFLFEAIELANSCDLKYKSSHNQRLLVELCMMQLAS 348 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP------------------------PQPQ 394 + + + AV P++ Sbjct: 349 ITFDSEKKKSDRKIIPASNFEQEAVSIPSEKKELVRENEHDISSPSEESSIPKPKVATET 408 Query: 395 SAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVT 454 A + E+ +++ + + + + K + S+ + + + S + Sbjct: 409 CAKENEEPYYSEESPAEINSVGEIPEEAEIQKKTEISDFTENEAQKTGEEDSEKPKTSNS 468 Query: 455 DRVQARPVPSALEKA--PAKKEAYRWKATTPVMQQKEVVATPKAL---KKALEHEKTPEL 509 + V + A P+K+ KA + ++K + K++ K+ E +K Sbjct: 469 EIVNQDDKDAFETAAEEPSKETQPAKKAFPDIKREKVSGLSIKSIGRKKELAEQQKAMMP 528 Query: 510 AAKLAAEAIERD----PWAAQVSQLSLPK--LVEQVALNAWKEESDNAVCLHLRSSQRHL 563 ++ + + W +L ++ + + D + L + L Sbjct: 529 VEEVMDDDFNEEDLVKQWKNYTEKLKRKGEKILASIFESQIPTLEDRNIHLTFPNETMKL 588 Query: 564 NNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR---TPLEWRQAIYEEKLAQARESII 619 + + +L L + + L I D+ + + TP E + + Sbjct: 589 DLEREENRLMTYLKAHLRNTHISLIIHVDEATSRKYAFTPQEKYEKLK-----------E 637 Query: 620 ADNNIQTLRRFFDAEL 635 A+ + LR FD ++ Sbjct: 638 ANPLLDKLRATFDLDV 653 >UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PCQ5_9LACO Length = 605 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 157/591 (26%), Positives = 269/591 (45%), Gaps = 17/591 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R+WRP+TF VVGQ + L N + +I HA+LFSG RG GKTS A++ AK Sbjct: 23 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK 82 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC ++G D+IEIDAAS V++ R + D V+YAP +G + Sbjct: 83 AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEHV F+LATT+ QK+P TI+SR +++ K + Sbjct: 143 KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ +++ IL++E IA++ ++LQ++A+ A+G +RD+LS+ DQ ++ +++ Q A+ Sbjct: 203 DQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAI 262 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G D + +L ++ + + + E G + +L E++ L+ + + Sbjct: 263 TGYADQVKIEALFLDLLNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT 322 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++R I + Q L Y +++ +++ ++R Sbjct: 323 TVTFLSANYLEQLR----LISTQVLSQTLQLANEALNSLRYTNQQQIPLKVFVVRIST-- 376 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + QV + A A P T R Sbjct: 377 QDVNATVSQTDAAEIKQLQTKVEQLSLQVAELLKKANSSAIAKPSEILTEIKDKVRPTKA 436 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q KK + L+ T + + ++ + + + Sbjct: 437 VNQNVATLKKKKTGLQLSTEANLKKVNAVLSQAT-----KQDLNTIKDVWQQDMSSLLEV 491 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + + + L+ + +A E + +L+ K + Sbjct: 492 SQRALLEVLEPVAASPTQVVLKCKYEFWFERAMADENFI-SQLENNLEKLTQHKYQIVLV 550 Query: 541 -LNAWKEESDNAV---CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 N+W V HL +Q+ L + ++ + +A L G V + Sbjct: 551 SENSWTTIRQEYVKKYKEHLIIAQKELASNPNEEVIKKA-KSLFGDLVNVK 600 >UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DVK2_BIFA0 Length = 850 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 163/636 (25%), Positives = 266/636 (41%), Gaps = 53/636 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L + L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMHALDENKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R Sbjct: 60 CINCVKGPTSHPCGECDSCRDLATGGPGSIDVVEIDAASHNSVDDARELRERAGFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEH+ F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHLMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LEH+ +EHI EP L+L+ RA GS+RD LS+ DQ + D ++ + Sbjct: 180 PPEIMTPYLEHVCEQEHIETEPGVLRLVTRAGGGSVRDTLSVLDQLMGGCVDNDITYDST 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D ++A++E NG ++ +I + G + + ++L + ++ L Sbjct: 240 VALLGFTPDALLGEAIDAIIEQNGAKLYGIIQKVIVAGFDARRFVEDLLVRTRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + ++ + A + + + + + A RM Sbjct: 300 GGDEAEHVLSDDAEAEDMSDLHRQADALGLQQLTAMAEIMDDTLGHMAGAASPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + + A A + AP+ Sbjct: 355 -------------RLELLAAKLLAGRASGFAAEAPALAGAGARGSSAAPSATQGSARGGF 401 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + A++ GAT + A P + A+ P A P+ Sbjct: 402 VDAQRPSGFNDGATAPQSGHDTPTQAAAPTATPQAIQAATTEHDA--GSQPQAASNVPSI 459 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 E + T V A P ++ + E+ P + + ++ + W + L Sbjct: 460 PEDIQRNGTVDERWDAIVAALPLDVRAYINRERVPRVMLAMDRKSGRQRLWIKF--ETPL 517 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV--- 589 K AL KE + + + G V L Sbjct: 518 DKYA--FALAVSKEPIGGT--------------TSVVSIVRTQVHNVFGPDVALAPTEKM 561 Query: 590 ---EDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 E P + P E Q I + L Q+ + I+A Sbjct: 562 ANGESAPPLSKLPPEEAQRIKAKLLQQSLQGIVAHP 597 >UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Tax=Bacteria RepID=C3J7N6_9PORP Length = 594 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 181/626 (28%), Positives = 280/626 (44%), Gaps = 44/626 (7%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RP +F ++GQE V L + + HAYLF G RGVGKTS AR+ Sbjct: 1 MSEKFVVSARKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIF 60 Query: 59 AKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NC + + CG CD+CR + R ++ E+DAAS D R L++ V P Sbjct: 61 ARAINCASPLASGEACGECDSCRAFAEQRSFNVFEMDAASNNSANDIRQLIEEVNIPPQV 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+Y+IDEVHMLS +FNA LKTLEEPPE+V F++ATT+ QK+ TILSRC F K Sbjct: 121 GRYKIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQVFDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I QL HI E I E +AL+L+AR A+G +RDALS+ D+ + DG+VS Sbjct: 181 IPSDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYTDGEVSYSRT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 L LDDD V+ +V + + L++E RG + +++ + L + + Sbjct: 241 LESLNILDDDYYFRFVDLLVHNDYASTLLLLDELIMRGFDPRTIVLGLTDFLRNLLLAFD 300 Query: 296 -QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 Q P L + E +LA+ + L+ KE + +R+ VEMTLL Sbjct: 301 PQTLP--LLHLTKETEASYNQLAQASGRGFLYQAIAKLMECLKEYRNSNAKRLLVEMTLL 358 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + A P TP PP S P+ + Sbjct: 359 SLTSLAQE----------RVSASHTPNQRPTPAATPPSAPSPVAAPRPQPIAAPAPARPS 408 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A ++ +T+A +S + P + A R + R P P+A A K Sbjct: 409 APPTPRQTGASTEAPQS--IDLPKPPPTASMAAPRPVAPAPRPAVAPSPTATSAAAPKAP 466 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Q++ T ++ A L L + + + + Sbjct: 467 -----------TQEKRSFTETEMQIAWNAYAEEHLQKNLFLKNAFNEVLPKLHNGTEIEA 515 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 ++ + E ++ +LRS+ + + +++ TI E+ + Sbjct: 516 IMFNMLQVNAVERIKGSLLSYLRSALHNSDITLQVRQIE-------------TIEEERSQ 562 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIA 620 TPLE +++ E + I A Sbjct: 563 RSITPLELFRSLAAEPQTPLHQFIQA 588 >UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8W3_ATOPD Length = 755 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 148/610 (24%), Positives = 249/610 (40%), Gaps = 40/610 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + ++ HAYLF G RG GKT++ARLLAK + Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAIL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C++C+ I G+ D+ EIDAAS T V++ R+ ++ YAP G+ KV Sbjct: 62 CHEAPGHLPDGTCEDCQLIAAGQHPDVFEIDAASNTGVDNVREEIISRASYAPVCGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+ TILSR +F +++ ++ Sbjct: 122 YIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSRVQRFDFRSIAADE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L + E +E A+ L+ R A G +RDALS +Q G G +S Q V +LG Sbjct: 182 MAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVYGGGVISEQTVRDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 S A+ + + + +N G + E+ + + + + Sbjct: 242 QSSGSLINSAALALAQRDISSLFTTVNTLFEGGKDLLQFTRELAAHVRDLYVATAVGVDS 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +A ++ + A+ + L ++ A ++R+ +E+T + Sbjct: 302 PALANSSASTEQLTKEAQAFGSVDRLSRVLTVLGDAANQMRTAVNQRLVLEVTFTKLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + L V++ V P P + AA + Sbjct: 362 NTELSLEALADRVAVLEQQLANGVVSAPVVQNSAAPVHASTPAAPAAPQPTSAPAAAPVV 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + PA A + + T P+ + A + + A Sbjct: 422 AHTSTPVPTPVAAPAPAPTQQSAPELPSQPEPKPTAATVPVSAPAPVAAATSSQPAP--- 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 V AL + E++ V + Sbjct: 479 -----------VPKEVDQSDALLARQWKEVSK---------------VCTSKNAAHAALL 512 Query: 540 ALNAWKEESDNAVCLHLR----SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + + + + + L + R L+ + E ++ + G I ++ Sbjct: 513 VSSTLESDDGSELVITLPKGSSFAMRMLSTPAVSDFVKECVAQVIGPR---RIKYVESSL 569 Query: 596 VRTPLEWRQA 605 T + + Sbjct: 570 AATAISREKR 579 >UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax=Bacteroidales RepID=B6YRS0_AZOPC Length = 471 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 121/350 (34%), Positives = 190/350 (54%), Gaps = 4/350 (1%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V AR++RP TF VVGQ ++T L N + ++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSDYIVSARRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAYLFCGPRGVGKTTCARIFA 60 Query: 60 KGLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC C CD C+ + R ++ E+DAAS VE+ R L + ++ P G Sbjct: 61 KTINCTCLKEDGEACNECDFCQSFNENRSHNIYELDAASNNSVENIRFLTEQMRIPPQIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 HYKVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILSRCQIYDFSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I LE+I E+I+ E AL ++A+ A+G +RDALS+ D+ + ++ Q+V Sbjct: 181 TINDIVEYLEYIAQNENISTEREALNIIAQKADGGMRDALSIFDRVASFSANNITYQSVI 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD + LVEA++ + + ++N+ +G + + ++V + I + + Sbjct: 241 ENLNVLDYEYYFRLVEAILIGDVSCSLLILNKIIRKGFDLQQVIVGLSDFFRDIMVCKDP 300 Query: 299 PAALGNDMAA--IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 + ++ I + L++ + + Y+ ++R Sbjct: 301 QTIVLFEIGDSAIREKYLNLSKQCTSDFLYNALELSNECDLNYRYSKNKR 350 >UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=C7QXQ5_CYAP0 Length = 650 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 144/360 (40%), Positives = 207/360 (57%), Gaps = 5/360 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + TATPCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + + L I +E I AL L+A+ A G LRDA ++ G ++T V Sbjct: 183 LDAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDA-ESLLDQLSLLSGTITTDKVWE 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + L L++A+ N E V+ RG E +L + G + + + +P Sbjct: 242 LVGAVPEQDLLLLLQAIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAP 301 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A I Q L +L R+ +E+TLL L Sbjct: 302 NRPDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLL 361 >UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJ98_9BACT Length = 539 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 176/421 (41%), Positives = 255/421 (60%), Gaps = 9/421 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP +F++VVGQEHVL AL N +S ++H AY+FSGTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKYRPSSFSEVVGQEHVLKALENSISQNKLHQAYIFSGTRGVGKTTIARVFSK 60 Query: 61 GLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC C C C EI+ GR ++ +E+DAASRT V+D R+LLD+VQY PA Sbjct: 61 CLNCMQADSPQVISCDKCSACEEIKIGRHMEFLEVDAASRTGVDDMRELLDSVQYKPANA 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+YLIDEVHMLS+ SFNALLKTLEEPP HV FL+ATT+ +K+P T+LSRCLQ +LK + Sbjct: 121 RFKIYLIDEVHMLSKSSFNALLKTLEEPPPHVMFLMATTEVEKVPKTVLSRCLQLNLKVI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +I+ L+ +L+ E I ++ ++ L+A +A+GS+RD L+L DQAIA G+G ++ V Sbjct: 181 PEAKIQLHLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLLDQAIAHGNGSLNADDVK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 A+LGT+D + LVE +V NG+ +++ +E+E +L ++ + H+I++ Q Sbjct: 241 ALLGTIDQSYIIELVEHVVAGNGDGAYNALHKITELNVEYEQVLKILISVFHKISLHQ-- 298 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ LA + P QL+Y+ L + P + +E+ +LR LA Sbjct: 299 -----QLHNNDSESIQRLAENLDPQITQLHYEIALNSLGKFHVHPHPKQALELCILRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + P +++ + V QP S + V E T + Sbjct: 354 FQPMGDVVTPRQEKKNLKISSTPQVEIKKTDTEQPASEVIHSKIVSENEQTITKESNPSS 413 Query: 419 L 419 L Sbjct: 414 L 414 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 76/204 (37%), Gaps = 7/204 (3%) Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE- 502 + ++ + P P +++ ++TP ++ K+ A + Sbjct: 337 HPHPKQALELCILRMLAFQPMGDVVTPRQEKKNLKISSTPQVEIKKTDTEQPASEVIHSK 396 Query: 503 --HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQ 560 E + + +++ W + L L V QV + L L+ S Sbjct: 397 IVSENEQTITKESNPSSLDLRSWNSMFDSLELSMFVRQVFSEFEFISFVDK-TLVLKKSD 455 Query: 561 RHLN-NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESII 619 +N G + + +++S G + L I D + +P + EE+L + S++ Sbjct: 456 DLINPTEGLKTEFIDSISARLGYKISLVIESGDV--IASPAVMHEQEAEEQLNLDKSSLL 513 Query: 620 ADNNIQTLRRFFDAELDEESIRPI 643 + ++ + FD ++ +ESI + Sbjct: 514 ENPVLKDILDSFDGKIIDESISKV 537 >UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K934_CYAP7 Length = 730 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 231/467 (49%), Gaps = 9/467 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQE + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T PCG C+ C+ I + +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L+ I N+E I + A+ L+A+ A G LRDA ++ G ++ V Sbjct: 181 PLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDA-ESLLDQLSLLSGTITPARVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++A+ + ++ RG E +L + G + + + + Sbjct: 240 ELVGAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTA 299 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT---- 352 P + L A+ ++ + A+ +I Q L +L + R+ +E+T Sbjct: 300 PTRSDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVTLLGL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L + P + ++V P+ P +P P Q Sbjct: 360 LSLGVVSKPSLEEKPVNGNNGKNGKGHHSSVQAPSISPNSQIISPPPQPKPEPKVDPVQE 419 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + Q T+ + +E A+ Q Sbjct: 420 SSPPQTTPEKPKTTEQNIQPSEDLEKLWHQVLDQVEPPATQALFSQQ 466 >UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUL3_9ACTO Length = 1113 Score = 450 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 208/400 (52%), Gaps = 9/400 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TFA+V+GQ+HV L N LS R++HAYLFSG RG GKT+ AR+LA+ +N Sbjct: 15 LALYRRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAYLFSGPRGCGKTTSARILARAIN 74 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G A PCGVC +C ++ +G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 75 CEKGPIAQPCGVCKSCTDLARGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVESRYK 134 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + + Sbjct: 135 IYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPK 194 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + + + E +A P AL L+ RA GS+RD+LS+ DQ I +G V+ + A+ Sbjct: 195 VLGDYMATLCEAEGVAIAPAALPLVVRAGAGSVRDSLSVLDQLIGGAGPEGVTYELAVAL 254 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + V+ + V + + G + + ++L L + ++ P Sbjct: 255 LGFTPDSLLDACVDGFAAHDSRAVFETVEKVIETGQDPKRFAEDLLRRLRDLVILSAVPN 314 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L R++ A I P ++ + G E+ A R+ +E+ + Sbjct: 315 AVASGLIEAAEDQGERLQTQAAGIGPAELTRAADIVAAGLLEMRGATAPRLQLELICAKV 374 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 L P + + + P P +A Sbjct: 375 L--LPGADDSTNGIQARLDRMERRLTIGVPAGTPEVAPAA 412 >UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVG4_9BACT Length = 576 Score = 450 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 169/544 (31%), Positives = 259/544 (47%), Gaps = 16/544 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LAR +RP+TF+D++GQE V+ +L GLS G + AYLFSG RGVGKT++AR+LAK +NC Sbjct: 6 SLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILAKAINC 65 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 ++G TATPC C +C EI +GR D+ E+D AS T V+D R L +++ YAP R ++ + Sbjct: 66 QSGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYAPLTSRSRIVI 125 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P T+LSRC F + L V QI Sbjct: 126 IDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQHFRFRLLTVSQIS 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 ++ H+ E+I+ P ++ARAAEGSLRDALSL DQ + +G ++ V+ +LG Sbjct: 186 DRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQLLRTGGESLTPADVADLLGVT 245 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D ++ A++ + + A G++ A + + I L +L + Sbjct: 246 DHALEEKMLAAILLGDLSATLRTARTALDTGVDPRAQVRSLARRFRDILHSTLDGTSLDS 305 Query: 305 DMAAIELRMRELARTIPPT---DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + PP ++ L+ G +L +P + E+ L R Sbjct: 306 PIYGWIPESVQALPLDPPPNIFFLEQALSVLVKGEDDLRRSPQPAITFELLLARLCHLRE 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP--ETTSQVLAARQQL 419 +PLPE A + +P+ V +P PLP E ++V + + Sbjct: 366 VLPLPE------ILAKIGVAGATSPSSVRSLGPKTHNSSPPTPLPTTEVPTEVFPSPPEE 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 +Q A + P A R S A + S + + Y Sbjct: 420 SSLQQAMPQEIPAPVDDGPLDLRIPADWPRALSRLPHEMAALLESVRTRRIEQNTLY-LD 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPEL----AAKLAAEAIERDPWAAQVSQLSLPKL 535 + + K K+PE L+ + ++++ + Sbjct: 479 TGNSFFNTRIQASRDPLAKALSLAIKSPEPLRIETPTLSRKGNSTGQITSEIASSGDKRE 538 Query: 536 VEQV 539 + Sbjct: 539 RRNL 542 >UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=beta proteobacterium KB13 RepID=B6BTP5_9PROT Length = 512 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 158/390 (40%), Positives = 243/390 (62%), Gaps = 9/390 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LARKWRP+ F +VGQE ++ AL N + R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKNLALARKWRPKNFETIVGQEFIVEALKNSILGDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC TG TPC C +C EI+Q + +D+IE+DAAS T+V++ R+LL+N Y P ++ Sbjct: 61 CLNCHTGSNPTPCCECSSCVEIDQSKSIDVIELDAASNTQVDNMRELLENANYQPTSSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ SFNA+LKTLEEPPEHV F+LATTDP+K+PVT++SRCL F+L + Sbjct: 121 KIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRCLHFNLMQMTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL++I EE+IA+E A+ ++++ A+GS+RDALSL D+ I +G VS + ++ + Sbjct: 181 DEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSLADRVINYTNGNVSLEKLTQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D L+ +++ N ++V+ L+N+ I +E+ L + + I+ Q Sbjct: 241 LGITSDGVIDELLTNILDNNKQKVLDLLNKLKEHHISYESALKVLSEKIFAISEEQTFGG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + + +Q YQ + G K+LP++P + +G MT++R L F Sbjct: 301 GNKSI---------QRGKQVSLQLLQTLYQISINGLKDLPFSPSQHIGFRMTIIRLLNFI 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 P + ++ ++ P + Sbjct: 352 PTNNVNAIQLEKEQINHNESIENHEPKKKK 381 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 5/210 (2%) Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 + R + V+ L+ L ++ S + + R P + Sbjct: 302 NKSIQRGKQVSLQLLQTLYQISINGLKDLPFSPSQHIGFRMTIIRLLNFIPTNNVNAIQL 361 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNA 551 + + E + E K E I+ D W V Q+ P + + +A N + DN Sbjct: 362 EKEQINHN-ESIENHEPKKKKTIENIQIDNWDHVVDQIK-PGMAKTLAQNCVVKSQEDNF 419 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L + +HLNN + L E+L + G +++ I + TP + +Q ++ L Sbjct: 420 LYLIVDDRFKHLNNDKYIKILEESLYTIYGEKIKIEIN--EETVTSTPAQKKQIEKDDAL 477 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIR 641 A +SI D+ I+ + FDA++ E +I+ Sbjct: 478 KVATDSIKTDSKIENILNEFDAQIIESTIK 507 >UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mobiluncus RepID=D0YP73_9ACTO Length = 719 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 183/611 (29%), Positives = 271/611 (44%), Gaps = 32/611 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFA+V+GQ+HV AL L+ GRI+HAYLFSG RG GKT+ AR++A+ LNC Sbjct: 4 ALYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R RFK+ Sbjct: 64 AEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPVRDRFKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+KF+ ATTDP K+ TI SR + + + E Sbjct: 124 FILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRTHHYPFRLVAPEI 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAML 241 +R L + + E + E L L RA GS+RD+LS+ DQ +A V A+L Sbjct: 184 LRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAEPVLHYDRAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D LV+A+V+ G +++ G + + ++L L + +++L+ A Sbjct: 244 GYTDSGLLQGLVDALVDGCGADAYGVVDRMIQTGHDPRRFVEDLLQYLRNLVILRLAGAG 303 Query: 302 LGNDMAAIEL----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + I MR PP + + G E+ A R+ Sbjct: 304 AEAVLGDIPAVQLSAMRAQVAARPPRTWTRAAEQVNAGLSEMGGASSPRL---------- 353 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + E ++ P A V P P T +P S Sbjct: 354 SLELLVAQLLLEFGVEAGEPAASLGVSGAAVSAPAPAVPVSSVSTPAVPAAASSAGFPAV 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 A + + P ++ PV A+V+ RV P PS E P E Sbjct: 414 PAPAAPTAVSQQSAAPVSSAAPIPVP-------AAVSPRVHEVPAPSPQESQP---EPVW 463 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 TP E V+ LK A ++ A+ EAI R W + L Sbjct: 464 EFKPTPWGISGEAVSGKTTLKPAKAALESAMPASSDNYEAI-RSRWGEIMDVLKAHHSAT 522 Query: 538 QVALNA---WKEESDNAVCLHL-RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + L+ + N V + LA ++ + G V +T V Sbjct: 523 ESLLSTHGQLQGMRGNTVEIAFQNQGMLRAFGERHVSALAGVITQVTGQNVVVTGVVAGF 582 Query: 594 PAVRTPLEWRQ 604 A +P Q Sbjct: 583 GAPSSPSTAPQ 593 >UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=Prochlorococcus marinus RepID=A2BZ44_PROM5 Length = 595 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 164/640 (25%), Positives = 286/640 (44%), Gaps = 57/640 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ +K+RP ++VGQE + L L +I AYLF+G RG GKTS AR+ AK L Sbjct: 5 HKPFHQKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSL 64 Query: 63 NCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + TA PCG C+ C++I G +D+IEIDAAS T V++ R+++D ++ P + R+ Sbjct: 65 NCLSCEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARW 124 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS + NALLKT+EEPPE V F+LATT+P+++ TI SRC +F K + Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISS 184 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I H L I N+E I E +AL+L+A+ + G +RDA SL DQ +G V+T+ V + Sbjct: 185 NTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNG-VTTKNVQNL 243 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ ++L+ A++ E ++ N+ G E +LV +L + + + L+ Sbjct: 244 LGEVSENDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKTLNNN 303 Query: 301 ALGNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + ++ I I ++ L ++ + + ++ +E+ L + Sbjct: 304 YSDIFYTSIDFQNELNKFSKNISKMRIIDWHNKLKNIDYQIKTSDNPKLWLEVHLTSLI- 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 E ++ +V + + + + +T S+ + ++ Sbjct: 363 --------ENKIEDNIVNNGQSNKETLNQKVINKDELINKTIISKNANQTESEDINKKEL 414 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + E A T + +N L P+ +W Sbjct: 415 IN---NQDIQPNYENANQTESEDINKKELINN--------QDIQPNYEHANQTDFLKEKW 463 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + ++ + + L A W + + Sbjct: 464 ELILSKLELPSTRMLLSQQAELASIDSNEVLIALSP-------NWENMIKSRKI------ 510 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNN-RGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + NA K+ + V L+ S + ++NN +Q+K+ + ST I + Sbjct: 511 IIENAVKKVCGDKVKLNFSSKKININNTAKSQEKIIKK------STSNREIQNTNFQNSN 564 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 TP+E Q + D+N + L FF+ E+ + Sbjct: 565 TPIEKPQKEFY------------DDNSKNLANFFNGEIID 592 >UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 Tax=Verrucomicrobia RepID=B1ZQU6_OPITP Length = 395 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 147/392 (37%), Positives = 208/392 (53%), Gaps = 12/392 (3%) Query: 1 MS---YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS YQV+ARKWRPQTF DVVGQ+HV+ L N ++ RI HAYLF G RG GKTS AR+ Sbjct: 1 MSSTGYQVIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARI 60 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 AK LNC G A C+ I +G +D+IEID AS V+ RDL D VQYAPA+ Sbjct: 61 FAKALNCTDGPKADFDPNDPACKAIAEGSHLDVIEIDGASNNGVDQVRDLRDTVQYAPAQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATTDPQK+ TI+SRC +F LK Sbjct: 121 GRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQRFDLKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I +L+ I E I AL+ +AR A+G +RDA S+ DQ I+ +S V Sbjct: 181 IPPDLIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCGTDISEADV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G + ++ L A+ + +++A++++ G + LL ++ + + + Sbjct: 241 LDVYGLVSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQAFVRAALLDAI 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + L G + ++ E+TLL+A+ Sbjct: 301 AQGGRSAKLGGEP---------MTTEQLTRMLDALREGEGAVKLGLAEKINFEVTLLKAV 351 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV 389 + + A P Sbjct: 352 DASRSRAIDSLIKELAALAEETPATEAGAQGS 383 >UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetella RepID=A9HZ16_BORPD Length = 736 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 186/363 (51%), Positives = 250/363 (68%), Gaps = 1/363 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARKWRP++F +VGQ+HV+ AL + L R+HHA+LF+GTRGVGKT+++R+LAK Sbjct: 28 MTYLVLARKWRPRSFDTLVGQDHVVRALTHALDSQRLHHAWLFTGTRGVGKTTLSRILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C C EI+ GRFVD +E+DAAS VE+ LL+ YAP GR+ Sbjct: 88 SLNCETGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 148 KVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ +L +E +A E AL+L+A+AA GS+RDALSLTDQAIA G ++ AV M Sbjct: 208 DAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSLTDQAIAYSAGNLTEDAVRGM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+EA+ + V+A+ +E + RG+ + L ++ LL R+A+ Q P Sbjct: 268 LGTIDQRHLVRLLEALPAGDATGVLAVADELSTRGLSYAGALADLAVLLSRVAIEQRVPG 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + + LA + P +QL+Y + R EL APD G M LR LA + Sbjct: 328 ATPADDP-LAADISRLAGVLHPDAVQLFYSVAVHSRGELSLAPDEYAGFVMACLRMLALN 386 Query: 361 PRM 363 + Sbjct: 387 GQA 389 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 7/193 (3%) Query: 455 DRVQARPVPSALEKAPAKKEAYRWKA-TTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 + E A + A + A+ L + P A + Sbjct: 543 EPPAWVDEDIPDEAQGGYVPAAEFTADPDDEFETLATGASAAELAPVARPQPAPRRARQA 602 Query: 514 AA--EAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQ 570 A +++ W ++L + L ++A + W +AV L + + + L ++ Sbjct: 603 APRLDSMSAADWPGLAARLPVTGLAAELARQSEWAGVHGDAVVLRV--AVKTLAESESRV 660 Query: 571 KLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 +L L G + L I T Q + A ++ AD +Q L Sbjct: 661 RLQTVLCEHFGQGLRLEIEVGATGDG-TAHAVAQIERAARQQAAEHAVAADPFVQALTTD 719 Query: 631 FDAELDEESIRPI 643 F + S+R + Sbjct: 720 FGGRVIPGSVRAV 732 >UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau subunits n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5P9_9GAMM Length = 820 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 242/567 (42%), Positives = 331/567 (58%), Gaps = 25/567 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F +VGQEHV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFHQLVGQEHVKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C +IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCELGITATPCGQCSACLDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLSALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL +L EE I E +L LLA+AA+GS+RDALSLTDQAIA +GQV+ V +M Sbjct: 181 PQIEQQLSFVLTEEQIHFEVASLALLAKAADGSMRDALSLTDQAIAQTNGQVNESQVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A L+ ++V+ +G +++L+ + + +++L ++L L H + + QL P+ Sbjct: 241 LGLMDASWAKRLLVSIVDKDGAELLSLVADLVKQNANAKSVLDDLLSLTHLLLLTQLVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++++ P +Q+YYQ LL G+K+L +APD ++G+EM LLR LAF Sbjct: 301 AAA-FNEDEADFIDAMSKSLSPEQVQVYYQLLLGGKKDLQWAPDEKLGLEMVLLRLLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + P+ +P ++ + + + L A+ Sbjct: 360 PHFSASNTI------------STVMPSALPSSNKAMSNIRQML-AGQASGDKLTAQTAQT 406 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T PV A++E + +K + A A Sbjct: 407 AQTAQTAQTAQTTQTTQNNSPVPTASVESVVEHPAVAA--------DKVQTPELAVVENA 458 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + P++ Q V A P A+ + E ++ + ++Q + +A Sbjct: 459 SEPLISQSAVSAVPLD---AVALNNSLESTEPEQSQDAWHQQYDEILTQAQEYREYSDLA 515 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRG 567 A ++A+ + + HL Sbjct: 516 HQANTVPDNSALMQQINQPEDHLVTDT 542 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 13/288 (4%) Query: 357 LAFHPRMPLPEPEVPRQ-SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L +P V +Q S A A A++ + P+ + T Sbjct: 545 LESQADLPTSAQLVEQQLSGAQSAIAAILRNRNISSHGLVKPESSSLPLSSINTPGDTEK 604 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + Q+ + + A + + + AP Sbjct: 605 KTEPQQRGNLVAQSQQQIRPNDEREDKAMVAYAAVEKPQSPRSSHVM-DPAHLAPELLVQ 663 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + + + +V+ P+ L + A ++D WA + Q+ L Sbjct: 664 ISEQPKVEEVAETQVIEIPEGFVSPLTDIRF----------AHQQDAWANLIEQMQLGGR 713 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + Q AL+ + D V L + + Q+HL++ ++KL E+LS+ + L+I N Sbjct: 714 IRQFALHGLFSQQDQNVTLQVDAQQQHLDSAVMREKLTESLSLALARDITLSIEFV-NAV 772 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP + +Q + + A+E I D Q R F A +DE SIR + Sbjct: 773 TGTPYQIQQQLDSNRWYHAKEVIENDAVTQQFMRRFAAVIDENSIRAL 820 >UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 Tax=Alphaproteobacteria RepID=C3MC56_RHISN Length = 645 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 190/649 (29%), Positives = 285/649 (43%), Gaps = 77/649 (11%) Query: 2 SYQVLARKWRPQTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 +Y+VLARK+RP+ F+D+ VGQE ++ L N GRI AY+ +G RGVGKT+ AR+LA+ Sbjct: 39 AYRVLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILAR 98 Query: 61 GLNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LN +T P ++C+ I GR VD+IE+DAAS T ++D R++++ V+Y P Sbjct: 99 ALNYKTAEIDKPTIDLRIPGEHCQAIMDGRHVDVIEMDAASHTGIDDIREIIEQVRYRPV 158 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY+IDEVHMLS +FN LLKTLEEPPEHVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 159 SARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 218 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + ILN+E + EP AL ++ARAAEGS RD LSL DQAIA G G V + Sbjct: 219 RISASDLVGLFSTILNKEAVRFEPEALAMVARAAEGSARDGLSLLDQAIAHGGGSVEMET 278 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +MLG D + + L E +V+ + + G +L ++ H + ++ Sbjct: 279 VRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMK 338 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 P A + + R R E A ++ T + +Q LL G E + EM L+ Sbjct: 339 YVPEAANDQSFSEIERRRGAEFAGSVAVTTLSRIWQMLLKGIPEAESSARPAGAAEMVLI 398 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R +P PE R P T Sbjct: 399 RLAH-AAHLPSPEEAARRLLELSGGEAGDGRPAPARTSG--------------NTQAQAG 443 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 Q + V+ A + S A L +V D +E PA+ Sbjct: 444 QPVQARSVEAAPVQRPSANGATM------------LRAVPDVAAQPITVGRIEDRPAQAP 491 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 A + + PV ++ A+ + L Sbjct: 492 AAKAEPKVPVNSVGDIA------------------------------DLCAKNRDIKLKT 521 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LV + ++L + +LA L G + + P Sbjct: 522 LVRGFLR--LVHIEPGRLDVNLSDDAP----KTLLNELAVKLKEWTG--IHWVVSYSREP 573 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRP 642 T +E Q E+++ AR+ D ++ + F A + + IR Sbjct: 574 GEPTLVEAEQRAQEQRVNDARQ----DPDVAAILARFPGARITDVRIRA 618 >UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=cellular organisms RepID=A9BDA2_PROM4 Length = 578 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 153/522 (29%), Positives = 242/522 (46%), Gaps = 20/522 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y L K+RPQ+F D+VGQ+ + + L L RI AYLF G RG GKTS AR+L Sbjct: 1 MSNTYAPLHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC T PC C+ C+ I G +D+IEIDAAS T V++ RDL++ ++AP Sbjct: 61 ARSLNCLNVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ+L TI+SRC +F Sbjct: 121 IARWKIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFS 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +++ + + L+ I N+E I E A+ L+AR ++G LRDA S+ DQ ++ ++ A Sbjct: 181 QIELNDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQ-LSLLPQPITVNA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + +++ L L A+ + + ++ + E G + +L + +L + + Sbjct: 240 VLDLLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVLKN 299 Query: 297 LSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P L + ++ E+A + P + + L L ++ R Sbjct: 300 AAPDYPDLCSISQESHQKLSEIASLVEPERLLQWQSHLKGSENNLRHSSQPR-------- 351 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + L P + A Q + P + P P Sbjct: 352 ---LWLEVLLLGLLNEPFNTKLETQVNAARANISYTSQERHEPSENPNKNNPNL-ENKNV 407 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A + ++ K++ + V + QA+ V + KA Sbjct: 408 ADKHQSSLEKNVNVKETNSGLSEAWEQVLARIDLPSTRMLLSQQAQLVGLSENKAEI-NV 466 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 A W + A +AL + + + + E Sbjct: 467 AENWLGMIESRKSLLEKAINEALGQERKLILNSQSRLSVNTE 508 >UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=Lactobacillus RepID=Q1G919_LACDA Length = 607 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 157/554 (28%), Positives = 262/554 (47%), Gaps = 21/554 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RKWRP+TF DVVGQE + L N L G++ HA+LF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC +QG D+IE+DAAS V++ RDLLD V YAP G++ Sbjct: 61 ALNCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP V F+LATT+ QK+P TI+SR +++ K Sbjct: 121 KVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + ++E+IL +E + +E +AL+++A+ A+G +RDALS+ DQ ++ V + + Sbjct: 181 EAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +Q L+ A++ + + + L A G + +L E++ L + + + Sbjct: 241 TGFAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +E+A+ P L + +++ +E+ L++A Sbjct: 301 GEFL----TDDFAQEIAQQ-SPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQASQ-K 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAV-----------MTPTQVPPQPQSAPQQAPTVPLPETT 409 + P+V + P + Q+ +P A L + Sbjct: 355 RQNSQAGPQVASAASNPAIERQIKVLKEQVHQLTQQVQQLSQRPSQAFSPRHVFQLNQQL 414 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 ++ + + + A + A+ A+ +AR + + Sbjct: 415 YTQKGGATEVAQQAAEKQQQAESLQAEITSSQEEIYAVLSQATKPGLAEARNLWDRDLPS 474 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE---LAAKLAAEAIERDPW-AA 525 ++ A + + + +A + P+ K + + ++ W A Sbjct: 475 MLEEPAKTVLGFLQPIAASDRAVLLSSQSRAWQLVTNPQEFLATLKADLDQLTKESWTIA 534 Query: 526 QVSQLSLPKLVEQV 539 V + + PK+ ++ Sbjct: 535 IVDEKAWPKIRQEF 548 >UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4E9Y5_9ACTN Length = 825 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 165/639 (25%), Positives = 266/639 (41%), Gaps = 39/639 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP TF VVGQ+H+++ L + ++ GR+ HAYLF G RG GKT++AR+LAK L Sbjct: 2 ESLYRKYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALL 61 Query: 64 CETGITAT--------PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYA 114 C A P G C+ C I +G D+ E+DAASRT V++ R+ ++++V +A Sbjct: 62 CRNAEAARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGVDNVREEIINSVNFA 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P RG++K+Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ TILSRC +F Sbjct: 122 PVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRCQRFD 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + E I H+L ++ +E ++ AL ++AR A+G +RDALS +Q G+G V Sbjct: 182 FHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQLSVFGNGSVHA 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 ++LG + D A+ + + + LI G + L +++ + + + Sbjct: 242 DDARSLLGEVSDQILGEFSRAIADRDVAELYGLIRAQVEEGNDLLELTRDLVAHVRDVYV 301 Query: 295 VQLSPAALGN-----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ A + A P + L E+ A D R+ + Sbjct: 302 ACVAGARAELFEGGSEQAEALAAEAAAFGEHPADRLARVLTVLDDAALEMRGASDVRLVL 361 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E+ R + + + + + Q + P T Sbjct: 362 EIACTRLARPEADLTIEALAERVARLEAMIANGAVPASVAAAQAAAPAASVPAAAQQPTL 421 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A A + + +R A+V A + Sbjct: 422 ISGARAAAPAASAAPAATSARQ-----------GGMPWDRGAAVPAAQPAPKSAAPAPAP 470 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 A + A V+ K A + + WA V + Sbjct: 471 RPVTPAPQPVAAPASAPAASTVSVSKPNNAAQVAAAGAAETPAVEDAGELQRKWAEVVER 530 Query: 530 LSLPKLVEQ-VALNAWKEESDNA-VCLHLRS----SQRHLNNRGAQQKLAEALSMLKGST 583 + + + LNA D + + + + + + L Q + + + G Sbjct: 531 VKARQASYAGLLLNARATADDGSKLTVSFPAGSTFAIKMLGRADTQSVVLPTVCAVFGRR 590 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 + V D TP +EE AR ++ AD Sbjct: 591 -TVDYVLD---GGGTPAP----QHEEHSPSARAAVSADP 621 >UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUQ2_XYLCX Length = 926 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 171/679 (25%), Positives = 269/679 (39%), Gaps = 72/679 (10%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFAEVIGQEHVTGPLMQALRSGRVNHAYLFSGPRGCGKTTSARILARTLNC 63 Query: 65 E----TGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 TPCGVC +C E+ +G +D++EIDAAS V+D RDL + +APAR Sbjct: 64 HANTPQTPLDTPCGVCPSCVELARGGSGSLDVVEIDAASHGGVDDARDLRERATFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE HM+S FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + Sbjct: 124 RYKIFIIDEAHMVSPAGFNALLKIVEEPPPHIKFVFATTEPDKVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + + LE + E + + L+ RA GS+RD+LS+ DQ IA + G V Sbjct: 184 PPDVLAPYLESLCASEGVTLGGGVVPLVVRAGGGSVRDSLSVLDQLIAGASTGVVDYDLA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG +V+A+ +G + ++++ A G + + ++L L + ++ + Sbjct: 244 VGLLGYTHSSLLDDVVDALAARDGASLFRVVDQLIASGHAPQRFVDDLLERLRDLIVIAV 303 Query: 298 SPAALGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG----- 348 S A G + A RM A + ++ + E+ A R+ Sbjct: 304 SGDAAGAVLRGLPADQLDRMAAQASRLGVAELSRAADLVNAALTEMTGATSPRLHLELLC 363 Query: 349 ---------------------VEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPT 387 +E L A A + + A + Sbjct: 364 ARLLLPGADEGAAGLAARIERLERGGLVAAASVAAPVRSGRQADGGAPTAGADVGGLRGA 423 Query: 388 QVPPQPQSAPQQAPTVPLPETT-----------------------SQVLAARQQLQRVQG 424 A ++ + T S V A Q V Sbjct: 424 AAVRAAMQASRRPTAEVQGDATEGAGARTVASAPAQDPAPAPGRSSVVAAPPQGDSGVGH 483 Query: 425 ATKAKKSEPAA-----ATRARPVNNAALERLASVTDRVQARPVPSA-LEKAPAKKEAYRW 478 A + S PAA A P +A + V RPV L P E Sbjct: 484 AVEPVASGPAAETVGGDPAAGPAVDAEPDVEPVPAAPVSDRPVDDELLHDEPVPDEPLDD 543 Query: 479 KA----TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + + V + P A + E + R W + + P+ Sbjct: 544 QPLDGPPVAAAPAEPHVGAAPGARAEEPPAPDPASAGGITTEIV-RRRWPEVLGSIQNPR 602 Query: 535 LVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + +A D + L + G + +++A+ G V + IV Sbjct: 603 AQAFLGEHAQVLSLEDGVLTLGFTPAVVTQARMGRPETISDAVYETLGVQVRVEIVAGSG 662 Query: 594 PAVRTPLEWRQAIYEEKLA 612 + ++ Sbjct: 663 GPRPRDAAPTRRTQDDAAE 681 >UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022F8_SOLUE Length = 568 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 146/370 (39%), Positives = 222/370 (60%), Gaps = 2/370 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV+ARK+RPQ+FADV+ QEHV T L N ++ RI H Y+FSG RG GKT+IAR+LA+ L Sbjct: 2 YQVIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G TATPCGVC +C+EI +G VD+IEIDAAS + + R+L +NV+Y PAR R+K+ Sbjct: 62 NCVQGPTATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE H ++ +FNALLKT+EEPPE F+L TT+ K+P TI SRC F +++D ++ Sbjct: 122 FIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + ++ I +E I + AL +LA A EGS+RD+LS DQAIA +++ V A+LG Sbjct: 182 LVDRMSWICGQEGIEADAEALAVLAAAGEGSVRDSLSALDQAIACCGAKITAPEVRALLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA- 301 + + EA+ ++ +++E G + E+ + + +++ A Sbjct: 242 AFSLESLEKVTEALAAGESRMMLEVVDELERNGQNLQHFSRELSRYFRNLLVTRIAGADT 301 Query: 302 -LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L AA ++ +A D+ Y Q L ++L ++ R +E+ L+R + Sbjct: 302 RLVAASAAQREKLGHIAGQFSEEDLSRYLQLSLDIFRDLQFSLQPRFHLEIGLVRLVQAG 361 Query: 361 PRMPLPEPEV 370 +P+ E Sbjct: 362 RLLPIEEALA 371 Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 4/142 (2%) Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 P + + + PE AA + R A + L NA + + Sbjct: 423 PSEPQSSGANALAPEPAAPAMSAGDPRQKLHAWFHEKGNAHLA-DAVENAAFTVTGGDLN 481 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQ 613 + S A EA+ + G + L I D A A + + Sbjct: 482 IVAPKSYGLYFRDKA---FEEAVREVFGRPLRLKITTGDASAAGPAPVSLSAPKSDAEDE 538 Query: 614 ARESIIADNNIQTLRRFFDAEL 635 +A+ +Q R F E+ Sbjct: 539 VTGRALANPEVQRFREIFGGEV 560 >UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C3F0 Length = 944 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 166/586 (28%), Positives = 258/586 (44%), Gaps = 31/586 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARL 57 L RK+RP +FA+VVGQ HV L+ L RI+HAYLFSG RG GKTS AR+ Sbjct: 2 ALYRKYRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARI 61 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 +A+ LNC G TATPCG C +CR + G +D+IE+DAAS VED R+L + + P Sbjct: 62 MARSLNCAEGPTATPCGQCASCRALAPGGPGNLDVIELDAASHNGVEDMRELREKAIFQP 121 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 A R+++++IDE HM++ FNALLK +EEPPEH+ F+ ATT+P+++ TI SR + Sbjct: 122 AESRYRIFIIDEAHMITASGFNALLKIVEEPPEHLIFIFATTEPERVLPTIRSRTHHYPF 181 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVST 234 + L +R LE ++ E + EP L+ +A GS RD+LS+ DQ IA SG V Sbjct: 182 RLLTPPDMRGLLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQLIAGSGTDGVDY 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +A+LG D +EA+ + + +++ G + ++LG + + + Sbjct: 242 ETSAAILGVTDSVIITDAIEALAAGDRAAMFSVVGRVIMSGQDPARFASDLLGRVRDLLV 301 Query: 295 VQLSPAALGNDMAAIELR----MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + P AL + I + E A TIPP + + Q L G + R+ +E Sbjct: 302 LSAVPNALEQGLVEIPESQIDGVLEQAGTIPPATLTRFTQVLSDGLRHFRGVTSPRLLLE 361 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFA---------PVAPTAVMTPTQVPPQPQSAPQQAP 401 + R L + ++ A T P P S +A Sbjct: 362 VLCARMLLPATEDSVESLLQRVEALEHGRPALADGSGAATPASAPVSSDAGPGSGAAEAD 421 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 P+ S A RQ+ + + + + S A A+ + + A Sbjct: 422 ASPMQSGQSAREAWRQRNAQRKKGAQTQGSRAGQAAPAQTPSQPQSQPEPVQQQPAPAAA 481 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 P + E + A T ++ A + E + E A + +E + Sbjct: 482 APVSQESVTEPQPAPEAPTATAEQPEQPTQAESVEQPQQAEQPQQSEPAEQPMSEEEAQA 541 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRG 567 + ++A +A E L Q+ G Sbjct: 542 EKIREFR--------RKMAEHARISEQQTRAQLAQEREQQTREREG 579 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 12/244 (4%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P + A +T Q P+ +A + P P + + +Q Q Sbjct: 466 QSQPEPVQQQPAPAAAAPVSQESVTEPQPAPEAPTATAEQPEQPTQAESVEQPQQAEQPQ 525 Query: 421 RVQGATKAKKSEPAAATR-----ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + A + E A A + + +A + + Q R + + + Sbjct: 526 QSEPAEQPMSEEEAQAEKIREFRRKMAEHARISEQQTRAQLAQEREQQTREREGEGGSMS 585 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK- 534 + PV+ + E PE A R+ W ++ + Sbjct: 586 IVEE--EPVVSASTAHSEQPTQAPQPEQPAQPEPEPAPAGIEQIREHWQDILAAVDGQHA 643 Query: 535 -LVEQVALNAW-KEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 + +A A + ++ + + + LN Q L+ A+ + G ++ V Sbjct: 644 FPIRVLAEQAVPLDVENDTLVIGHSTGALATRLNTPDYAQALSAAVKQVTGFNGQVHCVV 703 Query: 591 DDNP 594 P Sbjct: 704 GTRP 707 >UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ66_ALIAD Length = 586 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 167/573 (29%), Positives = 267/573 (46%), Gaps = 19/573 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQTF D+VGQ HV L N L G++ HAYLF G RG GKTS A+LLAK Sbjct: 1 MAYQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAK 60 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C+ C I++G VD+ EIDAAS V++ RDL D+V Y P + Sbjct: 61 AVNCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAK 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY++DEVHML+ +FNALLKTLEEPP HV F+LATT+P +LP TI+SRC +F + + Sbjct: 121 KKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRIA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E I +L + + I AL LA AA+G LRDAL+L +QA A G+G++ V+ Sbjct: 181 PEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTVAD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G++D ++LV + + M + A G + ++ ++L ++ + +V+LS Sbjct: 241 VVGSVDIGSLVALVGDLAGRSFLSAMDRLGRWYASGKDASRIVHDLLQVVRDLFIVKLSQ 300 Query: 300 AALGNDMAAIELRMRELART--IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + ++ + +A + + + L +L Y + R+ +E L+ Sbjct: 301 SPDALAGKPVDP-YQPVASRDDVTVDWLLAAMRKLGELYTQLRYVEEPRLALEAVLMGLA 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A +P + A + P QP A P A+ Sbjct: 360 AERRSKDDVDPAGSIEPARTGAAARREG--RPPEQPAQADADLPVQASAPAPPAPEVAQG 417 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTD--RVQARPVPSALEKAPAKKEA 475 + T++ + AA + + +R ++ R + V ++++ + A Sbjct: 418 DPDAREAVTRSAPARAAAHRKRETLARLYRDRDEALEARLREMWQDVLASVKAKRVQTHA 477 Query: 476 YRWKATTPVMQQKE-----------VVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + + + A + A+E L + AI + W Sbjct: 478 WLLHGEVALATPRAVVLSFKSRIHREAVMKPADRAAIEAALAEALGQPVHLFAILQADWE 537 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLR 557 + L+ E + + S + V L + Sbjct: 538 EFAASLAPALAEEAGSREDGEAPSTDVVQLAID 570 >UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0W5_SYNWW Length = 499 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 138/397 (34%), Positives = 217/397 (54%), Gaps = 3/397 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRP+ FA+VVGQE +TAL N + G++ HAYLFSG RG GKTSIA+++AK Sbjct: 1 MAYLALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C++I G F+D+IEIDAAS +++ RDL + V+ PA+G+ Sbjct: 61 AVNCENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKN 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKT+EEPP+ V F+LATT+ K+P TI SRC ++ + L Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 +I +L + + I EP AL LLAR A G +RDALS+ DQ + G+ +S Q V Sbjct: 181 AEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSYKGNNSISKQDVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G +DD L+ A++ + ++ ++ A ++G E + L E L + ++ Sbjct: 241 VMGLVDDAFMAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAREASMFLRDFLLYLVAG 300 Query: 300 AALGNDMAAIELR--MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +A E + + I ++ + ++ +L ++ ++ +E+ + Sbjct: 301 KEADLVVAGEESQAFFEQQKSQINMQNLLRALRIMMDTADKLRFSEGQKYLLEIAFMEIA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 +P + + Q Sbjct: 361 TLFSEEKSAQPSFLEEKKPKKKADPRAKASSNEAQDA 397 >UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=Streptococcaceae RepID=Q1JL73_STRPC Length = 561 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 221/467 (47%), Gaps = 12/467 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEP E+V F+LATT+ K+P TILSR +F KA+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 IR L +L++E +A+E AL L+AR AEG +RDALS+ DQA++ D QV+ + Sbjct: 182 IREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G++ V + + + +A + G ++L L + +V+ Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGDN 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA--- 358 ++ I + E+ R+ EM ++ Sbjct: 302 QRQSAVFDTNL------SLSIDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQLAKEEG 355 Query: 359 -FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ-APTVPLPETTSQVLAAR 416 P + + Q+ P + P P+ T+ + Sbjct: 356 VALPSGLSSDVTTEVEGLKRELNQLKQALAQLQASPSPSHAPVKPAQAKPKLTTYKIDRV 415 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 + L+ ++ + + + N L+ +++ + P Sbjct: 416 KILKIMEETVQDSQQSRQYLDALKTAWNEILDSISAQDRALLMGSEP 462 >UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V2B2_SPHWW Length = 582 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 226/378 (59%), Gaps = 6/378 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F +++GQ+ ++T LAN + GR+ HA+L +G RGVGKTS ARL+AK L Sbjct: 8 YRVLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKAL 67 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCGVC+ C I +GR +D++E+DAAS T ++D R++++ V+YA Sbjct: 68 NCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREIIEAVRYASVS 127 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS+ +FN LLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 128 ARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRFDLRR 187 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + +++ +++ E + +P AL L+ARAAEGS RD LS+ DQAIA G G+V Q V Sbjct: 188 ITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIAHGSGRVEAQQV 247 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D L M++ + V+A I G+E A+L +L H I ++ Sbjct: 248 RDMLGLSDRGAVRRLFGEMLKGDAAAVLASIRGQYDLGVEPVAMLHGLLETCHAITRAKV 307 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A + + +Q LL G E+ A EM LLR + Sbjct: 308 AGTDDPALSAEEREAYGDWAGKLGFATLHRLWQLLLKGHGEVQTAAMPIEAAEMALLRVV 367 Query: 358 AFHPRMPLPEPEVPRQSF 375 ++P P R + Sbjct: 368 H-ASQLPDPGELARRLAS 384 >UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY Length = 692 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 169/548 (30%), Positives = 244/548 (44%), Gaps = 22/548 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-IALYRKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T PCG CD+C + + G +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCAKGPTPDPCGECDSCVALAPDGGGSIDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E ILNEE + ++P AL L+ RA GS RD LS+ DQ +A D + ++ +A Sbjct: 180 PPNTLRELIEEILNEEKVPYDPAALPLVIRAGGGSARDTLSILDQLLAGSDERGITREAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG D +V+A+ +G V LI+ G + ++L + + ++ Sbjct: 240 VQLLGYTDSSLLGEMVDALGAGDGAAVFELIDRVVEGGHDPRRFAADLLERVRDLVVLNA 299 Query: 298 SPAALG----NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P AL N +MRE A + + + L G E+ R+ +E+ Sbjct: 300 VPDALDKGLINVPPDAVEQMREQASRLGAAQLTRAAEILNKGLTEMRGTTSPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L +P +P A A + + P + P P T Sbjct: 360 SRIL-----LPGVDPGDE---LALAARLERLERNGIAAAPAAPAVSPPAAGTPATAPPST 411 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + P+A P + A P P+A A Sbjct: 412 PAAAPRPSTAEPRPPQPPAPSARPHPAPAAADDWGAPRRPSQPAPAAPQPAAPGPAGEGS 471 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 RW + A ++ + L E + Sbjct: 472 FDDRWPHIVEYLASNRKRAAHAIVRDGVHATLLQGRTLTLFFET------EGLMRSFVTG 525 Query: 534 KLVEQVAL 541 +A Sbjct: 526 GRARDIAE 533 >UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=Prochlorococcus marinus RepID=A2C5C3_PROM1 Length = 565 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 162/640 (25%), Positives = 275/640 (42%), Gaps = 84/640 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RP +F ++VGQ+ + + L L RI AY+FSG RG GKTS AR+ AK Sbjct: 4 TYEPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKS 63 Query: 62 LNCETGI--TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC T TPCG C+ C+ I G +D+IEIDAAS T VE+ R+L++ ++APA+ R Sbjct: 64 LNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAKAR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC++F + + Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIA 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + L I +E I A+ L+A+ ++G LRDA SL DQ + ++ + Sbjct: 184 LHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQV-SLLPPPITQLNIIN 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS- 298 ++G + +++ + L ++++ + ++ + N +G E A+L + +L + + +++ Sbjct: 243 LIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVTN 302 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P L N + +LA + I L + + + +E+ LL L Sbjct: 303 KPTNLCNISREHSESLNDLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIHLLGML 362 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + S+ + Sbjct: 363 T------------------------------------------------DEVSKENNKIE 374 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + +S+ T R V N E++ + + +P Sbjct: 375 QSLVKTKISDNSESKNTNNTSNRIVPNTEKEQIKTTA-------FLDETKTSPTLNLDDI 427 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 WK ++ + K L + +AE + W + + Sbjct: 428 WKKVIAML-------ELPSTKMLLSQQAKLINLNSDSAEIAISEKWINMIQS------RK 474 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + +A+ + ++ + L + +L+N + + + I D P Sbjct: 475 NLIEDAFYKARGSSTKVVLIQQKDNLSNHKKVEDNLQKIEQKN------QIKIDREPNKN 528 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 T ++ E K SI D + FF+ E+ Sbjct: 529 T---IKEEKIESKNNLKVNSI--DQKAKQFADFFNGEIVN 563 >UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCW6_GARVA Length = 801 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 148/528 (28%), Positives = 252/528 (47%), Gaps = 25/528 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L+ L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NCE G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCEKGPTSHPCGECQSCKDLATGGAGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 E + LE I +E I +P L+L+ RA GS+RD LS+ DQ + + DG +S + Sbjct: 180 PPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 A+LG + ++ ++ +G + ++ G + + ++LG + + ++ Sbjct: 240 VALLGFTPNSLISEFIDDLINHDGASIYDVVRRVIVGGYDTRKFVEDLLGRVRDLLLMVS 299 Query: 296 ---QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + L + + + + ++ D+ QT+ + A RM +E+ Sbjct: 300 AGPKAASSLLNDVSPEDLEILNKQSASMTLHDLARMAQTINDALSAMASAISPRMNLEIL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + R LA ++ VA + Q S V Sbjct: 360 VARLLA------------DSETSNTVATNLRINNVQQQNISTSTQNIQNKVSSGAHFVGS 407 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + ++ + S + T A P+ A + + + + + A +K Sbjct: 408 TSNKKYVSADSENNSTSNSSLPSETTASPIAKAETQSATNTKETESKKVFLNDAHNANSK 467 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 ++ A M K V P +++ + E P + A +R Sbjct: 468 NDSMDTDA----MWDKVVSKLPDDVREYVTREYVPTVQLTSAQSGRQR 511 >UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BCW3_STRRD Length = 727 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 154/489 (31%), Positives = 222/489 (45%), Gaps = 10/489 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEKGPTPDPCGECESCVALAPTGPGHLDVIEIDAASHGGVDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E IL E + EP AL L+ RA GS RD+LS+ DQ A D ++ Sbjct: 180 PPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSILDQLFAGSDEAGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D D ++ A +G +V +N G + +++L + ++ Sbjct: 240 VSLLGYTDGDLLDDVIAAFAARDGAQVFQAVNRVIEGGHDPRRFAMDLLERFRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A R++ A ++ P ++ + G E+ A R+ +E+ Sbjct: 300 VPEAAGSGLLDRPADELERLQAQAVSMGPAELTRAAEIFNAGLTEMRGAASPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPV--APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 R L + P + AP + Q Sbjct: 360 ARTLLPGAAQGEAALLSRLERLEKGGVTAVPAAYAAPAPVIHAAPAPGAPAPVVQAVAPQ 419 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 A A++S P + A P + + A Sbjct: 420 APPPVPPAAGTAPAAPAEQSRPQGDGDWPVAARPGAPAPEPQAQQAPAAPAAAPVSGAGG 479 Query: 472 KKEAYRWKA 480 W Sbjct: 480 GAVQQAWPQ 488 >UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 Tax=Hydrogenothermaceae RepID=B2V5N0_SULSY Length = 501 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 146/457 (31%), Positives = 232/457 (50%), Gaps = 19/457 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ +RK+RP++F +V+GQEHV+ L N + L R+ HAY+FSG RGVGKT+IAR+L+K Sbjct: 1 MAYEAFSRKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ + C C+NC EI++G F D+ EIDAAS ++D R + DNV Y P +G++ Sbjct: 61 VLNCKNPVDYESCNQCENCIEIDKGSFPDMYEIDAASNRGIDDIRMIRDNVGYQPIKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKTLEEPP F+LATT+ K+P TI SRC F K Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQTFIFKPPTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI++ L ILN E I +E A++LLA+ EG +RD+ SL DQA+ +G+++ + V + Sbjct: 181 EQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASLLDQAVTYAEGKLTRKDVEEI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + + + + LI+ G + ++L +H+ + Sbjct: 241 LGIVPYSYVQKFLRNIKDLKVDENIKLIDTLEDEGYDINVFWKQLLEAIHKTLI------ 294 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L D E+ + E D + +T+L+ L Sbjct: 295 DLALDKED------EIFSKEDLKSLIYLKTIFTKTYSEARTFFDPKQIYHLTILKTLYLD 348 Query: 361 PRMPLPEPEVPRQSFAPVAPTAV-------MTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + P V + Q + P++ L + SQ++ Sbjct: 349 SIKRIEQLFAEGVQVVPKKEPEVLKQEIKPQEKQETKQQEEIKPKEEQKQDLNKIISQII 408 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL 450 + + + + K+ E A + + + + R Sbjct: 409 KNEKVIAVIIKNAEIKEDENAVYIKVKSKSEEDILRD 445 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 209/380 (55%), Gaps = 25/380 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L RK+RP+ F++VVGQ HV T N L G I HAY+F+G RG GKT++AR+LAK LN Sbjct: 2 QALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C+ C+ I+ G F+D++EIDAAS +++ R + + V Y A+G +KVY Sbjct: 62 CENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K L +E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNLTIEDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +LE + +E+I AL +A+ A G +RDAL++ +Q S ++ + V LG Sbjct: 182 IKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKDITIEDVRETLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + + +++++ + ++ +I + G + E L+++L ++++ Sbjct: 242 VPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEE----MILKIESGDY- 296 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 ++ + + L K++ Y+ ++ + +++ L + P Sbjct: 297 --------------------ELIEFLKPLSEILKDIKYSEEKLILIKLGFLSVMKLKPPR 336 Query: 364 PLPEPEVPRQSFAPVAPTAV 383 + V + P + Sbjct: 337 ENIKKNVEKAEENEPIPESK 356 >UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C8M2_MICLC Length = 1159 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 163/643 (25%), Positives = 264/643 (41%), Gaps = 48/643 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP F DV+GQ+HV L L+ R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T TPCG CD+CR++ G +D++EIDAAS VED R L + +AP R Sbjct: 60 CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+ +IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + Sbjct: 120 RYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 E + LE + EE ++ E L L+ RA GS+RD LS+ DQ IA + +GQVS + Sbjct: 180 PPEPLIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQEGQVSYELA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG + +++A+ + V +++ G + + ++L + + + Sbjct: 240 VSLLGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARA 299 Query: 298 SPAALGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM-- 351 P G + R+ A + ++ + ++ A R+ +E+ Sbjct: 300 LPEEAGAILHGMPEDQVRRLSAQAAQLSRAELSRLADITNLALTDMVGATSPRLHLELLM 359 Query: 352 --------------TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 R A R+ L T + T SA Sbjct: 360 ARLLLPASDETHRGLAARLEALERRLELGGAAPVEDGAPEGTTTPTRSGTPAADGGGSAG 419 Query: 398 QQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 + PL A R+ + A+ A + A T Sbjct: 420 NAEGSGPLTGAALARAAMRRPEESAPTASTAPPERWTPPAPQSVAEAPEGDAAAGATGSE 479 Query: 458 QARPVPSALEKAPAKKEAYRWKATTPVM-------------------QQKEVVATPKALK 498 + + P PA+ A P P Sbjct: 480 RPQQAPQPGRPEPAEVGARSEDVRRPEAGNRPEPEGRPEPEGRPQAQDSTGAAPAPAHGP 539 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN---AWKEESDNAVCLH 555 + +P A + + R W ++ L + + + + + + + Sbjct: 540 EETAAPSSPTPAPAASQVEMIRRAWPDILAALEDASRLVWMLVKDNASVAGYDGSLLTIG 599 Query: 556 L--RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 ++ L RG + L EA+ + G L ++ + Sbjct: 600 FQQDGPRQSLLGRGGDRVLGEAVHQVLGIRPRLDLILGGDAPT 642 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 49/230 (21%), Gaps = 6/230 (2%) Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A P EPE R + A + PP Q P P A Sbjct: 683 APVPGQAPREPESSRPAPPRSAAPSTAEDDPAPPAASPRTAQQRQTPQPSPAWTPEAPAT 742 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ P A P A + +P+ A Sbjct: 743 SWGPTPTSSTTPAPAPPADGWGGPDEEPPAWDDAPPPEEDPWDSLPAFDPDAEQDDSDGP 802 Query: 478 WKATTPVMQQKEVVATPK----ALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 T P +E + + P+ A A + P Sbjct: 803 EGWTPPARDAEERPVGAAGWDGPVPSVEDWGAPPQAAPASGGAAPDAGQGPPVRPDAPAP 862 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 E A + L + +L + G+T Sbjct: 863 GESEPSAEEVRRAYDPGP--LVREEEHSIPVFARPEAELRAEFAKRFGAT 910 >UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 Tax=Micrococcineae RepID=A0JSD4_ARTS2 Length = 1078 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 172/671 (25%), Positives = 272/671 (40%), Gaps = 61/671 (9%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 6 ALYRRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 65 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG C +C E+ +G +D+IEIDAAS V+D RDL + YAP R R+K+ Sbjct: 66 AEGPTDTPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRDRYKI 125 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + E Sbjct: 126 FIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEP 185 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A +G + + A+L Sbjct: 186 LMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPTGLDYELAVALL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +VEA+ ++ V ++ G + + ++L + +VQ P + Sbjct: 246 GYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQAMPES 305 Query: 302 LGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A R++ A + ++ E+ A R+ +E+ R L Sbjct: 306 AQSILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELLCARIL 365 Query: 358 AFHPRMPLPEPEVP--------------------------------RQSFAPVAPTAVMT 385 A AP A Sbjct: 366 LPTSEQTERGIAARIDRVERRLNYGGNDVGTPAAAATASSAPAPSAPVPAAVPAPAASPV 425 Query: 386 PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNA 445 P P + + +A +Q + + + P +T PV+ + Sbjct: 426 PAAAPAASLAPAAVPRATSETPAPAPAASAPEQPAAPEAPARESLTPPRVSTTDWPVDES 485 Query: 446 ALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 ++ P A +A A V A + L E Sbjct: 486 QAANRSASGPAPSRPAGPQPAVPEAAFPQAPAAPAAASGPSAPAPVEPVAAARTPLRPEA 545 Query: 506 TPELAAKLAAEA-------IERDPWAAQVSQLSLPKLVEQVAL--NAWKEESDNA-VCLH 555 +A + + R W + LS K + NA + D + L Sbjct: 546 GQPVAERNVPAPNASSDVEVLRRAWPEVLQTLSKIKRSTWALVEPNAQVGQFDGQVLTLA 605 Query: 556 LRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV----------EDDNPAVRTPLEWR 603 +S + L +A+ G ++ V E + A +P Sbjct: 606 FTTSGLAGAFGRADHSENLRQAIHKTVGIDCQINAVSGGASSSASSEPNPKAPASPASPE 665 Query: 604 QAIYEEKLAQA 614 + ++A Sbjct: 666 TPAGPKAQSKA 676 >UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI02_PETMO Length = 467 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 24/385 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L RK+RP+ F +++GQ HV+ N L+ + HAY+FSG RG GKT+ AR+LAK LNC+ Sbjct: 5 LYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCK 64 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PC C+NC I F+D+IE+DAAS +++ R++ D+ Y P G++KVY+I Sbjct: 65 DPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYII 124 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HML+R +FNALLKTLEEPP HV F+LATT+ +K+P TI+SR + K L +I Sbjct: 125 DEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNEIVE 184 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L++I + E I +E AL+++A+ A+G +RDA+S+ +Q G+ +++ Q +LG D Sbjct: 185 GLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKKITHQDTLDILGLFD 244 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++ + +E + + + +A + G + E LL + + + + Sbjct: 245 ENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIFDSLI----------- 293 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 +++ T K+L Y+ ++R+ ++ +L + + Sbjct: 294 -------------NEKRSNLIHLMGTFNDILKDLKYSENKRLIFDVEILDFMHKNSTTSS 340 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVP 390 + P + Sbjct: 341 TISYDKETTPKRKQVATESVPKETQ 365 >UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 Tax=Bacillus cereus RepID=C2TXN4_BACCE Length = 541 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 134/382 (35%), Positives = 211/382 (55%), Gaps = 3/382 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ Sbjct: 6 MSNYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIG 65 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 KG+NC PC C NC +I +F D++E DAAS VE+ R + D V AP G Sbjct: 66 KGVNCLAPLSNGEPCQKCANCGDINNNKFADILEFDAASNNGVEEIRQIRDQVHLAPVTG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDPQK+P TI+SRC QF + + Sbjct: 126 KYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFEFRNI 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + +L+ I +++ I AL L+++ AEG LR+ALS+ DQ IA V+ + V+ Sbjct: 186 PLQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNNVTIEDVA 245 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + L+ + E + + + R + + L +++G + + LS Sbjct: 246 TVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILER-KQADFFLSDLIGYYRDLMIFNLS 304 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +A LA IP + I + L + ++ + +E+ L++ L Sbjct: 305 QKTDMFKVAIYNNAFINLAERIPLSKIPSILEELTTVQYKIKSSVYAATLIEIALVKILQ 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAP 380 + + +P + + Sbjct: 365 MEQEISMNQPNIKNNENEASSE 386 >UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPV7_LAWIP Length = 574 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 177/655 (27%), Positives = 279/655 (42%), Gaps = 96/655 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LA ++RPQ+F +VVGQE V L+ + ++ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKQVSLAIRYRPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC C+ C+ I +G VD++EID AS V+D R L +++ YAP GR+ Sbjct: 61 ALNCQQAPTAEPCNTCEQCKRITKGIHVDVVEIDGASNRGVDDARRLRESIAYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R SFNALLKTLEEPP F+ ATT+P K PVTI+SRC F LK L Sbjct: 121 KVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ + L H+L +E+I +E A+QL+AR A GS+RD++SL Q + +G ++ V + Sbjct: 181 EELIYNLIHVLKQENICYEDNAIQLIARRASGSIRDSMSLLGQTLMFSNGILTENVVRNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L+ A + N E V+ L +G++ L E L + +++ Sbjct: 241 LGLAEQEFYEKLLRAFKDQNYEEVVKLNQILLEKGVDLGFFLREFATLWRNLFLLRKVSK 300 Query: 301 ALGNDM---AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 N + R+ LA P + + +M +E Sbjct: 301 LDANMLGMLPDEIPRLTSLANLFEPIYLHAAW----------------QMVLE------- 337 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + ++ PVA + + P S Q + + +TS Sbjct: 338 --------NQRQILMSLEPPVALELLFLNLTLLPHLVSLEQISNGLAALSSTS------- 382 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 E + D + V SA ++ + Sbjct: 383 ---------------------------LETEISNKLRDNSMKKDVISASTESESISNTKF 415 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV- 536 V++ + K +K + + ++ E W + S Sbjct: 416 QNEYQEVVEGDLQFISVKDVKSKRDTISSSMNEGEIIEEPT----WEGFLQYCSKNGSTI 471 Query: 537 EQVALNAWKEE-SDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 LN N + + + S L + +KL E + G + + Sbjct: 472 NTYFLNKLTGIFQQNTLVITVDSQFLYEKLISDK-LEKLYELVHNYAGEKYTVQL----- 525 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES------IRP 642 + + ++ I++ IQ L++ FDAEL + I+P Sbjct: 526 --------IEPKNTFKLETEIKKDIVSHPVIQILQQTFDAELLRCTPTTNLHIKP 572 >UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRL5_9CORY Length = 829 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 160/645 (24%), Positives = 269/645 (41%), Gaps = 53/645 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E + RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTPVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAIE----LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AL + + + E + + + G +++ R+ +E+ + R Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTP-----------------------------T 387 L+ P+ +P + AP AP V Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPAAQPQAQQPVQPQQPAQPQ 421 Query: 388 QVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA--------ATRA 439 P + A QA + S A ++ Q Q + S+P Sbjct: 422 SQQPVQRPAQPQAQQPTQSQQQSAPSAPVEEKQPRQYQEYGQPSQPVQRPAQPQAQQPVQ 481 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKK 499 + S P ++ + + + P +Q+ + ++ Sbjct: 482 PQAQQPVQPQQQSAPSAPVEEKQPRQYQEYGQPSQPEQEEHEVPEPRQQWEAGHDEQPQQ 541 Query: 500 ALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK---LVEQVALNA-WKEESDNAVCLH 555 + PE + R W ++ +S K + A + D + L Sbjct: 542 VESAPQEPETS--TVDVETVRAKWVDILNYISREKKNTTARILLRGATLLDVRDGTLYLG 599 Query: 556 LRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + + LN+ + +A+ +++ + V + T Sbjct: 600 ILTGAIANRLNDAKHNADIVDAVMAETNASLAVECVLGNKIPAST 644 >UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 Tax=Acetobacteraceae RepID=B5ZIA7_GLUDA Length = 687 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 164/417 (39%), Positives = 237/417 (56%), Gaps = 13/417 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP T D++GQ+ + L N +LGR+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 57 YRVLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARAL 116 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 117 NCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATRFRPMQ 176 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR KV++IDEVHMLSR++FNALLKTLEEPP V F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 177 GRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSRCQRFDLRR 236 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS------GDGQ 231 + + I E P AL L+ARAA+GS+RD LSL DQAIA G Sbjct: 237 VPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGSVEGDGAAP 296 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + V+ MLG D + L+EA++ +R +A+ +EA ARG + +L ++L L+H Sbjct: 297 IGAERVADMLGLADRGRVFDLLEAVLAGQPDRALAITDEAHARGADLGVMLGDVLELVHT 356 Query: 292 IAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ ++ PA + A R LA + + +Q LL G E+ APDRR Sbjct: 357 VSRLKAVPALRQSADLPEAERERGGALADRLSVPVLGRTWQMLLKGLSEVEMAPDRREAA 416 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 EM L+R P + + + P Q S A + +P Sbjct: 417 EMILIRLCYVADLPPPGDLVRRLTEGGETGGSGSGALSGGPAQGTSQGTSASGLSVP 473 >UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBE2_9RHIZ Length = 617 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 157/463 (33%), Positives = 241/463 (52%), Gaps = 14/463 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP TF D++GQ ++T L N + GRI Y+ +G RGVGKT+ AR+LA+ L Sbjct: 24 YVVLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGYMLTGVRGVGKTTTARILARAL 83 Query: 63 NCETG---------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 N E T G+ +C++I +GR D++EIDAAS T V++ R+++++ QY Sbjct: 84 NYEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASNTGVDNIREIIESAQY 143 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 P R KV++IDEVHMLS+ +FNALLKTLEEPP HV+F+ ATT+ +K+PVT+LSRC +F Sbjct: 144 TPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVPVTVLSRCQRF 203 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 L+ ++ + + I E + ALQL+ARAAEGS+RD LS+ DQAIA G+G V+ Sbjct: 204 DLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSILDQAIAMGEGHVT 263 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 +V MLG D + L EA+ + + G E ++ ++ +H IA Sbjct: 264 AASVRDMLGLADRGRIFDLAEAIFRGDLPAALNGFASLHRDGAEASEVIGDLAEAVHAIA 323 Query: 294 MVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 V+ A + A + R+ +LA + + +Q L+ G +E+ P+ + EM Sbjct: 324 RVKAVGEEPAGESLTAEEKKRLSDLASRLSMPYLSRAWQMLIKGLEEVGRTPNPDVAAEM 383 Query: 352 TLLRALAFHPRMPLPEPEVP--RQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 L+R A+ +P P+ + S P A+ + T P + Sbjct: 384 VLIRL-AYTADLPTPDELIRGLGGSAMPARRPALAPAETRTSDTRPTVNTTTTAPRADAE 442 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS 452 LA V + + +++A+ Sbjct: 443 HDDLATGDVFDFVGDDGELDDGDALDDDEQTSLSSASRLPDPR 485 >UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9N9_9ACTN Length = 742 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 154/620 (24%), Positives = 265/620 (42%), Gaps = 56/620 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RP F DVVGQ HV++ L N + +I HAYLF G RG GKT++ARL AK L Sbjct: 2 ESLYTKYRPAVFQDVVGQTHVVSTLQNAVLEHKIGHAYLFCGPRGTGKTTMARLFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C + PCGVC+ C+ I QG D+ E+DAASRT V++ R+ ++D V YAP +G +K+ Sbjct: 62 CTSPQNGLPCGVCETCKNIAQGIHPDVFELDAASRTGVDNVREEIIDRVNYAPLKGAYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TT+P K+ TILSR ++F + ++ Sbjct: 122 YIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSRVMRFDFHRIKSDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + EH + + AL+L+ A+G +RDALS +Q G G +S + V MLG Sbjct: 182 MFVHLQKVCTLEHFSADDEALKLIVEHAQGGMRDALSSLEQISVFGKGVISKRLVEDMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +LV+++ + +R+ I +G E+ + + + + Sbjct: 242 ATSQTNLTALVQSLALRDTKRLFEEIASLCEQGKSIVQAACELAEYMRDVYLAKTLMEQH 301 Query: 303 GNDMAAIE--------LRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 E ++ A+ I ++ + A + R+ E+ Sbjct: 302 LTLDDYAELFTCGVATSQLEADAQAFKNVRHIAYVLNVVVDMISHIKTAANPRLTFELYS 361 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R + P + + + + ++ Q + L Sbjct: 362 CRMIH---------------------PVVTNSSSALIKRLEAVETQLAQLTSRSPQQSGL 400 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 +A + ++ + +R +P+ A +R+ + +P+ ++ P + Sbjct: 401 SAAHAPVQHTARVQSASNTSVQQSRYQPLQQPAQQRVQQSIQQQAQQPIQQQAQQMPQQP 460 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSL 532 +A TP Q+ A L + A ++ + W V + + + Sbjct: 461 VQPPIQAHTPQPAQQPSQAIAAPLSQG------------TADKSQLQRMWKQVVDKLMEV 508 Query: 533 PKLVEQVALNAWKEESDNA-----VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL- 586 + NA D + + + + L + ++ + G+ + Sbjct: 509 NPSRGSLLTNAEIRSDDGTRLVIELPIGSSFATKMLAEPSISALVQSCVAPIFGNRKLVY 568 Query: 587 ------TIVEDDNPAVRTPL 600 A +TP Sbjct: 569 AESSLQQTNIARAHAAQTPA 588 >UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 Tax=Ammonifex degensii KC4 RepID=C9RAG1_AMMDK Length = 427 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 146/383 (38%), Positives = 208/383 (54%), Gaps = 18/383 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L R WRPQ FA VVGQ HV L N L++GRI HAYLF+G RG GKTS AR+LAK LN Sbjct: 5 QALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAYLFAGPRGTGKTSTARILAKALN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T PC C C I +G +D++EIDAASR +++ R+L + V+ +P R+KVY Sbjct: 65 CLQGPTPVPCDTCPQCLSIMEGTSLDVLEIDAASRRGIDEMRELRERVRLSPVHSRYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+ + NALLKTLEEPP V F+LATT+P K+PVTILSRC +F + L I Sbjct: 125 IIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRCQRFDFRRLPTALI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + + E AL+LLA+AAEGS+RDALSL DQA+A +G++ V+ +LG Sbjct: 185 EEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAEGELRAIDVADLLGK 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ + + + + L+NE RG + + +++ L Sbjct: 245 VPSQALEEMLTYLQKGDLAGALRLVNEIEERGKDLNLFVRDLILRLR------------- 291 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 I +RE P+ + L ++ +P + + +E+ L+R L+ Sbjct: 292 ---EEILRHLRE--ERKAPSWLLRSLAALHQALVDMRLSPLKSLTLELALIRLLSTEEGR 346 Query: 364 PLPEPEVPRQSFAPVAPTAVMTP 386 P V + +P Sbjct: 347 PPSLERVKALWPDVLQFVKEASP 369 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 130/397 (32%), Positives = 210/397 (52%), Gaps = 18/397 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL RK+RP+TF++VV Q+HV A+ + + H Y+F+G RG GKT++AR+LAK LN Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C CREI++G F+D+IE+DAAS +++ R + D V Y P G++KVY Sbjct: 62 CENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP HV F+LATT+ +K+P TI+SRC F + + E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + E I + AL +A+ A G LRDAL++ +Q +G++ + V LG Sbjct: 182 EKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + V A+ + +RV ++++ G ++E ++Q + L Sbjct: 242 IPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYE-------------VLIQEAVEDLV 288 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 D+ + + DI + LL +E+ +A ++R+ ++ Sbjct: 289 EDLERERGVYQ-----VSANDIVQVSRQLLNLLREIKFAEEKRLVCKVGSAYIATRFSTT 343 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + E +V ++ V + + Sbjct: 344 NVQENDVREKNDNSNVQQKEEKKESVKAKEEKQEDSE 380 >UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H8_DESRD Length = 538 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 145/421 (34%), Positives = 223/421 (52%), Gaps = 3/421 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L +RPQTF+ VVGQ+ V T L+ + ++ AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSPGPLTHTYRPQTFSTVVGQKQVRTILSRAAAENQVAPAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G + PC C +CREI QG VD++EID AS T V+ R L ++V YAP R+ Sbjct: 61 AINCEQGPASEPCNQCRHCREITQGTGVDVVEIDGASHTGVDHVRKLKEDVGYAPLSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS+ +FNALLKTLEEPP F++ATT+P + P TI+SRC + L Sbjct: 121 KVIIIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHIFQRLRQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L +L E I + A++L+AR GS+RDA+SL Q +A G ++ + V + Sbjct: 181 EELTDHLRRVLENEAIEMDAEAVRLIARKGAGSVRDAMSLLAQVLALGQRRLESAHVREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + LSL EA+ + + + ++ +G++ L E+ + +++ S Sbjct: 241 LGLAGQETLLSLFEALRDQDCIAINTVLRSVLDQGLDLAFFLRELTATWRNLFLLKQSGE 300 Query: 301 ---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +L + + A + I +Q L G++ + + + + +E+ LL Sbjct: 301 GALSLLDLPQEEAREWLQWAEAFSASHIHACWQMTLEGQRRVLTSVEPALALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PL +P AP + P + AP P S ++ + Sbjct: 361 FMQDLVPLGQPGSGSSGPAPGSAGGTSGRRASGAAPAGSQTAAPQKPQSPVQSAAESSEE 420 Query: 418 Q 418 + Sbjct: 421 K 421 Score = 41.5 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 23/172 (13%) Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKL---AAEAIERDPWAAQVS--QLSLPK 534 P A P+ AAE+ E W V Q ++ Sbjct: 377 GPAPGSAGGTSGRRASGAAPAGSQTAAPQKPQSPVQSAAESSEEKTWEGFVRYCQQAVEG 436 Query: 535 LVEQV--ALNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 ++ + E + + +S + L + + +EL + + Sbjct: 437 EAAKLPGLNHVQGEIDGGCLRIQCQSRVQAERFAVTEKKNLLHDLACQYFETDMELEVHQ 496 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 P E ++ ++ IQ F A+L E +RP Sbjct: 497 --------PKESAPPDRNTL----KKEVLEHPAIQEALSAFQAQLVE--VRP 534 >UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=Rothia mucilaginosa RepID=D2NPN5_9MICC Length = 972 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 165/610 (27%), Positives = 268/610 (43%), Gaps = 27/610 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 30 ALYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGKTTSARILARCLNC 89 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVCD+CRE+ + G +D+IE+DAAS V+ RDL + AP R R+K+ Sbjct: 90 AQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPVRDRYKI 149 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 150 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSRTHHYPFRLVPPEV 209 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDGQVSTQAVSAM 240 + L+ + ++E +A EP LQL+ RA GS+RD+LS+ DQ + AS + A+ Sbjct: 210 LLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQLMAGASSQNGIEYDRAVAL 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++EA+ + + ++ A G + + ++L L + +V+ P Sbjct: 270 LGYTHAQLLDEVIEALGAKDAPTLFGAVSRVVATGQDPRRFVEDLLERLRDLIVVKAVPQ 329 Query: 301 ALGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A G + R+ + A+ + ++ + T+ + A + + L+ Sbjct: 330 AAGQILQGVPQDQLERLAQQAQALGERELTVAAGTVNETLNGMTGAANPQ-------LQL 382 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 R+ LP E A + + + +A P A Sbjct: 383 ELLCARLLLPAVEGSAGGAEVAALASRLQVLERRVASGAAGSAGSAGSAPAQGGMSAARA 442 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A K + S P + + ++ +S A P+ A Sbjct: 443 AGMAAAGLAPKTQVSAPQTSQEQAAPQQSGSQQGSSQQASAGAPPLAGAPLSVAPLAPTA 502 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAA---------KLAAEAIERDPWAAQV 527 + A + A + A A + W A + Sbjct: 503 QESAAGAPLAGNTPAAPHAPAAPNVPASPAAAAAGTPSAPLKLDPNDPLAAVQGNWRAIL 562 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNN-RGAQQKLAEALSMLKGSTVEL 586 +++S+P EQ+ + + L++ + L +G +L +S V + Sbjct: 563 NRMSVPGAAEQLMK--VRPARMDGATLYVSADIATLRAVKGFVPELTARVSEFLRRQVTI 620 Query: 587 TIVEDDNPAV 596 Sbjct: 621 HAQVAKPGEQ 630 >UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 Tax=Nautilia profundicola AmH RepID=B9L692_NAUPA Length = 493 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 137/394 (34%), Positives = 222/394 (56%), Gaps = 27/394 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L RI HAYLFSG RG GKT+ AR+ AK L C Sbjct: 2 VLALKYRPKRFEEIIGQDAIVKTLVNSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + G T+ PC C+NC + R +D+IE+DAAS K+ED R+L+++ +Y P+ G++K+++ Sbjct: 62 DHGPTSNPCEECENCIMANESRHIDIIEMDAASNRKIEDIRELIEHTKYKPSVGKYKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIKNGIIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 + L IL E++ + AL+L+ +AA+GS+RD+L+L DQAIA G++ +V MLG + Sbjct: 182 NYLIKILAIENVEFDEEALRLIIKAAKGSVRDSLTLLDQAIAFSKGKIDLDSVVDMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + +A+ ++ +R+ ++ E + E+++ E++ L Sbjct: 242 NPEIINEIFDAVKNSDKKRIKEIVGEIKD--YDIESIIDEVIIYLKDAL----------- 288 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 ++P +Q ++ + ++ + Y D + + LR Sbjct: 289 -----------FEGSLPLITVQRFFNIVADVKELIKYNTDNEFVLTLMFLRMSEAVKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 + + +SF P + P + Q +P+ Sbjct: 338 IDDLI---KSFEQKIDLNTYKPKEEPVKIQKSPE 368 >UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 Tax=Borrelia RepID=Q0SN45_BORAP Length = 566 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 204/370 (55%), Gaps = 1/370 (0%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 A K RP+ F + GQ+ V+ L + + +I +AY+FSG RGVGKTS AR A+ LNC+ Sbjct: 8 ALKKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKN 67 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G T PCG C NC+ IE +D+IEID AS T V+D R + + + + PA ++++Y+ID Sbjct: 68 GPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRIYIID 127 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNALLKT+EEPP ++ F+ ATT+ KLP TI SRC F K L +E+I + Sbjct: 128 EVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNM 187 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L+ + E+HI +E AL+ +A + GS+RDA +L DQ ++ + + + + +G +D Sbjct: 188 LKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFTNSDIKLDQIRSKMGFTND 247 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 + L +++ + + ++ +++ G+ +E L++ + +++ Sbjct: 248 EFLEKLSVSILSEDVKELICILDSIFLAGVSYEQFLLDSIEFFREALFLKIGIKNFEFIG 307 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 E ++L ++ LL ++L ++ + R +E+ ++ L +P Sbjct: 308 IKSEDLRKKLIE-FDLNYLERIIVVLLETYRDLQFSINPRYELEINFIKILRLKNYIPNH 366 Query: 367 EPEVPRQSFA 376 Q+ Sbjct: 367 VLIKQIQNIE 376 >UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium RepID=Q98BM8_RHILO Length = 604 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 162/466 (34%), Positives = 248/466 (53%), Gaps = 7/466 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP F+++VGQE ++ L N + GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 18 AYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARA 77 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P ++C+ I +GR VD+IE+DAAS T ++D RD+++ V+YAP Sbjct: 78 LNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVS 137 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 138 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 197 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +D + L I +E I+ + AL ++ARAAEGS RD+LS+ DQAIA G G VS +AV Sbjct: 198 IDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGAGAVSAEAV 257 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + + L E +++ + +A G + A+L ++ H + ++ Sbjct: 258 RAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEFNHLVTRLRF 317 Query: 298 SPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 P A+ + R + AR + + +Q LL G E+ + EM L+R Sbjct: 318 VPTAMDDASLSQDERQRGADFARALSVRVLSRTWQMLLKGIPEVQSSNRPVSAAEMVLIR 377 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 +P + + A P P P + + A Sbjct: 378 LAH-AADLPTLDEALRSLDGAATVQNGASRPNGAPGGPGNGGGAGAVAQTRMPSGSSGAQ 436 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 +L A A + PA + + V +L + ++ D + Sbjct: 437 TMRLVEAAPALAAFVAPPAPVSEPQQVPVRSLADIVALADAQRDIA 482 >UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAA1_9ACTO Length = 967 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 166/614 (27%), Positives = 265/614 (43%), Gaps = 28/614 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TF V+GQEHV L L R+ HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG C++CRE+ G +D++EIDAAS V+D RDL + +AP R R+K+ Sbjct: 64 AQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P+++ TI SR + + + + Sbjct: 124 FIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPPDV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 + L + +EEHI L L+ RA GS+RD LS+ DQ +A DGQV+ Q A+L Sbjct: 184 LGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVLDQLMAGAIDGQVTYQTAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ +G ++ G + + ++L L + ++ ++ Sbjct: 244 GYTDSALLDESVDALAGGDGAAAFRVVERMVESGHDPRRFVEDLLQRLRDLLIIAVAGDG 303 Query: 302 LGNDMAAIE----LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + +A RM+ A+ P + + + A R+ +E+ + R L Sbjct: 304 ARDVLADTPHDQFERMQRQAQNWGPHGLSRAADLTDEALRAMTGATSPRLQLELLVGRIL 363 Query: 358 AFHP---RMPLPEPEVPRQSFAP---------VAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 P + P+ AP A + + Q+ V Sbjct: 364 VPSPGPAQAPVQGTVGMTGGGAPREASAPSSSKASSGRFGAREAREALARKKQERAEVSA 423 Query: 406 PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA 465 P + +A Q + P + A A A Sbjct: 424 PAAQAPASSAAPAPQGMPAWGSGPDWSAQKPVAPEPSSAPAQAARQEAPRHEAAHETAPA 483 Query: 466 LEKAPAKKEA-YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 E PA+ E + A +A + ++ E +ER Sbjct: 484 REATPAQAEPRPAAPPQQRHESSAPQRSETPARAEAPAWGRNADMLRGRWNEVVERLSSI 543 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLR-SSQRHLNNRGAQQK-LAEALSMLKGS 582 ++V+ + + A + V L + + +RG + + +A++ + G Sbjct: 544 SRVTWSMVGGNAQLGA------VDGSQVVLLFPVEAMVNAFSRGPRAADVEKAINEVTGL 597 Query: 583 TVELTIVEDDNPAV 596 TV ++ Sbjct: 598 TVSVSAQVGQASGG 611 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 36/166 (21%), Gaps = 7/166 (4%) Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV-PLPETTSQVLAA 415 A + + P P + T P+P P+ + P P T + + Sbjct: 650 AAPQGDLESADTGWPEPVLPPEPAQSGWPTTARAPEPALEPEPVESAWPEPATVTPIRRD 709 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALE------RLASVTDRVQARPVPSALEKA 469 T+A +P AL A+ P Sbjct: 710 EPVAPAPAPITRAPDPQPVERPALPERAARALAQAPADTPEAAQASSPNGDAAPRKRSFT 769 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 + A P + P + + P Sbjct: 770 VFRYPGDPEPADDPADAPVQPEPAPASSPVFDDAPIEPAAHTPSTP 815 Score = 41.5 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 8/175 (4%) Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMT------PTQVPPQPQSAPQQAPTVPLPETTSQ 411 F P + EP ++ A AP + P V P + T PE + Sbjct: 630 HFQPGSWVSEPPPFDEAAAQAAPQGDLESADTGWPEPVLPPEPAQSGWPTTARAPEPALE 689 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL--ASVTDRVQARPVPSALEKA 469 T ++ EP A A + + ++ +R + + Sbjct: 690 PEPVESAWPEPATVTPIRRDEPVAPAPAPITRAPDPQPVERPALPERAARALAQAPADTP 749 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 A + + P + V P + A + P A + D Sbjct: 750 EAAQASSPNGDAAPRKRSFTVFRYPGDPEPADDPADAPVQPEPAPASSPVFDDAP 804 >UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Tax=Rhodobacteraceae RepID=Q1GKB7_SILST Length = 608 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 183/581 (31%), Positives = 284/581 (48%), Gaps = 17/581 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG+ Sbjct: 17 YQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGM 76 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCG C++C I +GR VD++E+DAASRT V D R+++D+V Y A Sbjct: 77 NCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAYRAAS 136 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 137 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRR 196 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + V Sbjct: 197 IEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQV 256 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + L L++ ++ + + ++ A G + A+L ++ + H +++V++ Sbjct: 257 RAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDLAEITHWVSVVKI 316 Query: 298 SPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P A + R +++A +P + +Q LL +E+ AP+ M EM ++R Sbjct: 317 TPDAAEDPTISPDERARGQDMAARLPMRVLTRMWQMLLKALEEVAAAPNAMMAAEMAVIR 376 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 +P PE + + P P P Q +P P S Sbjct: 377 LTH-VADLPSPEELLRKLQDTPPPPHPGGPGGGHPMQGMGSPAAGGGGGAPAYASAPPQG 435 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 G T + + ++AL R S ++ ++ + Sbjct: 436 APGGDPRGGHTMSTSG--GQSAVLAQRADSALARYPSFEHVIELIRHHRDVKLLVEVETG 493 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 R + P + A A +I D A +++L Sbjct: 494 VRLVSYQPGRIEFTPAANAPQDLAARIGTALQNWTGSRWVVSIAPDGDAPTIAEL----- 548 Query: 536 VEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEA 575 A NA + E S + + + + + + A Sbjct: 549 -RDAAQNALRAEASAHPLVQAVLQNFPKAKITKIRTQEELA 588 >UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=B0TVX0_FRAP2 Length = 551 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 170/360 (47%), Positives = 241/360 (66%), Gaps = 1/360 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ LARK+RPQ+F++V GQ+H L +L + L ++HHAYLF+GTRGVGKT++ RLLAK Sbjct: 1 MSYQALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG+TA PC C+NC I F+DLIEIDAASRT VE+T+++LDN+QY P++GR+ Sbjct: 61 CLNCKTGVTAEPCNKCENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPE+VKF+LATTD K+PVTILSRC+Q HLK + Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ QL+ +LN+E+I+ + ++L +A A+GSLRDALSL DQAI+ G++ + M Sbjct: 181 SDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLLDQAISFCSGELKQAQIKQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D ++ +++EA++E N V+ + +A+L + + + + Sbjct: 241 LGIIDSEEVYNIIEAIIENNPSAVLPAVKNLTLTESNADAVLDRIAEIWFACCIYSFT-Q 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L + ++ I YQ + +K++ AP GV M +LR +AF Sbjct: 300 SLDAINDIDIDIINKVLDKISIEQAHFLYQLTITAKKDISLAPSFETGVTMAVLRLIAFQ 359 >UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUW8_HERA2 Length = 575 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 178/638 (27%), Positives = 277/638 (43%), Gaps = 72/638 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RKWR QTF D+VGQ H++ AL N ++ RI HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSSQALYRKWRSQTFDDLVGQSHIVQALRNAIAANRIGHAYLFTGPRGVGKTSAARILSK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NCE + PCG C CR I +GR VD+IE+DAAS T V+D R++++ VQ+ P + R Sbjct: 61 AVNCEQSDPRLRPCGECSTCRAIAEGRAVDVIEMDAASHTSVDDAREIIEKVQFRPTQFR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 KKVYVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSRCQRFVFNRHT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + LE + EE + EP + +ARAA GS+RDA+S+ DQ + G+ Q+ V + Sbjct: 181 IANTIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSILDQLMGYGEPQIPLTRVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +LV A + +++IN A +G + +++ L + +++ Sbjct: 241 LLGATASREVETLVAAFAAEDVAAALSVINTIADQGADLRQFTRDVVSYLRGLMLLKSGG 300 Query: 300 AALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA D+ + M+ ++ + I + + +L P ++ +EM ++ AL Sbjct: 301 AADLLDVGHDVLATMQSHSQQLALAAILAWLKIFSGLDHQLRTTPYGQLPLEMAVVEALV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P R + AP+ P P P+V P Q + + Sbjct: 361 VPVPAAVAAPSPVRGTVAPITRPNPAVARPAEPAPVQRQTPTPSVVTPRPVEQPVVEQPP 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 A + + + A E L + + V + + Sbjct: 421 QAEPTPVPVAAVAAQPMPEAEQHIVLAESEILLAEVEAVWLQVIED-------------L 467 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 K P +Q P AL+ TP + + + Sbjct: 468 KPYNPRLQAVLKSCEPLALEDNTLVIGTPSPFHTKQLDDQTQRRLIEDL----------- 516 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 L+ + + + Sbjct: 517 -------------------------------------LAKAVNRQMFVR---GEEANRD- 535 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + RE I+ D+ ++ R FDA + Sbjct: 536 ---QQNRARDARRQ--REEIMKDHVVKAARNIFDARIV 568 >UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 Tax=Aquificaceae RepID=B4UA58_HYDS0 Length = 421 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 135/419 (32%), Positives = 209/419 (49%), Gaps = 12/419 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY ARK+RP+TF +++GQE T L N +IHHAY+F+G +G GKT+ AR+ AK Sbjct: 1 MSYIPFARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ IE+G FVDLIE+DAAS +++ R + + Y P +G++ Sbjct: 61 VLNCLNPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVREGASYLPMQGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKT+EEPP + F+L TT+ K+ TI SRC + Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I+ L I N+E+I + AL +L+ A+ S+RDA SL DQA G+ +V+ V +M Sbjct: 181 ENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D +E ++E++ + + ++N +G + + I Sbjct: 241 FGPVDKASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKAFAIGE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + P + G + Y D + +E+T+L+A Sbjct: 301 AEEEFYKKMLEK--------PLEVFLYLEDIINQGFSAM-YQKDPILALEITVLKASLIK 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +P+ E P TP + P + + PE ++L + Sbjct: 352 DFVPISELLKESLDL-PTKSAEKKTPNE--PTEDIKAENSKDQEYPEEVEKILEVFKPA 407 >UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Tax=Finegoldia magna RepID=B0S0K6_FINM2 Length = 537 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 118/418 (28%), Positives = 220/418 (52%), Gaps = 1/418 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + RK+RP TF V GQ+H+ L N + I HAY+FSG+RG GKTS A++ A+ +N Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C+NC+ + +D++E+DAAS +++D R+L D V Y P + ++KVY Sbjct: 62 CLDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK +EEPP+H+ F+LATT+ K+P TILSRC ++ K ++ + I Sbjct: 122 IIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +++ILN+ + + A++L+A A+G++RDALS+ DQ ++ ++ Q ++ +LG Sbjct: 182 SDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGI 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D+ LV ++++ + V+ + + E ++ E+L + + + + Sbjct: 242 VDNKGIFKLVNSIIKKDATDVLGNLYTISHNKP-VENVMDELLNHFRNLLLSKNGLEKIR 300 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + I I ++ +K+L A +++ +E+ ++R + + Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRLIDYIDYD 360 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 L + + + + + + + +S+ A + +L Sbjct: 361 DLIARVNTLEDKLNNIEQNGIKINSTKELSEFDEKIDKKIEISQKSSKKEAKQDELSD 418 >UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Q2_9FIRM Length = 645 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 208/380 (54%), Gaps = 4/380 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL R++RP+ F +++GQ++++ L N + I HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYTVLYREFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C C C +C +I G D++EIDAAS +++ RDL + V Y P GR+ Sbjct: 61 SICCLNNKEGEACNECASCNDINIGDGADIVEIDAASNRGIDEIRDLKEKVNYMPNFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H+ F+ ATT+P K+ TILSRC +F +D Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSRCQRFDFNRIDS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E + + L IL+++ I +E AL+L+A EG+LRDALSL D+AI+ D +++ + Sbjct: 181 EVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAISVVKDNKITKETADD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR--IAMVQL 297 +LG + D++ L + ++E + ++ + +++ +G E +++ +++ IA+ Sbjct: 241 ILGLISDEEIFLLAKGILENDVDKSLNAVHDFLNKGREVGSIITQLMEYYSNKIIAVNVK 300 Query: 298 SPAALGNDMAAIELRMRE-LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + N + ++E I +L + ++ + + ++ Sbjct: 301 EPEKIINKSSTYISSLKESFNGLEDSKRISDILYSLAKLKNDMRFFSEPEFLFTAKIINL 360 Query: 357 LAFHPRMPLPEPEVPRQSFA 376 + S Sbjct: 361 CSGAADNTSDNKTGANTSVN 380 >UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZS3_JONDD Length = 872 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 172/653 (26%), Positives = 262/653 (40%), Gaps = 56/653 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF+D++GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDTFSDMIGQEHVTGPLMQALRSNRVNHAYLFSGPRGCGKTTSARVLAR 59 Query: 61 GLNC----ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYA 114 LNC TPCG C +C+E+ +G +D++EIDAAS V+D R+L + ++ Sbjct: 60 ILNCAENSPENPRDTPCGQCPSCQELARGGAGSLDVVEIDAASHGGVDDARELRERATFS 119 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P+R R+K++++DE HM++ FNALLK +EEPP ++KF+ ATT+P K+ TI SR + Sbjct: 120 PSRDRYKIFILDEAHMVTAQGFNALLKIVEEPPPYLKFIFATTEPDKVIGTIRSRTHHYP 179 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVS 233 K + + + + + +E IA L L+ RA GS+RD LS+ DQ IA G +S Sbjct: 180 FKLVAPDTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQGSAIS 239 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + A+LG +V+A+ +G + +I E G E + ++L + Sbjct: 240 YEHAVALLGYTPATLLDDVVDALAAHDGAALFRVIEEIINTGHEPRRFVEDLLERFRDLL 299 Query: 294 MVQLSPAALGNDM----AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG- 348 +V LSP + A RM A+ + + T E+ A R+ Sbjct: 300 IVALSPDGARAVLSALPADQYERMNHQAQQLGAGHLTYAADTTNTALTEMSGATSPRLHL 359 Query: 349 ---------------VEMTLLRALAFHP---------RMPLPEPEVPRQSFAPVAPTAVM 384 R + P + APVA TA Sbjct: 360 ELLCARLLLPTASDSAAALAARIDKLERGHGPTRAAVQPTSPAADGRDNDEAPVARTARP 419 Query: 385 TPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKS------------- 431 + + + P P TS Q A Sbjct: 420 VAKRPDSTRTTPARPNPAPAQPAGTSAPALNPAPEPDPQVAAPVNSPTAPPAVSSAASAA 479 Query: 432 -EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW-KATTPVMQQKE 489 A + + AA A+ + A P + A+ E R + PV Sbjct: 480 APTATTSDDVALAAAASWAAAASLVQDSAPSTPQRAHENNARNEPQREQQPEQPVASDPA 539 Query: 490 VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESD 549 A P L A + + + +Q A A + Sbjct: 540 PGAHPVPTAGVEHSVSGASLTKGAVESAWVSALDTVRQQSMPAWAMAQQHA--AVHGVTG 597 Query: 550 NAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + V + S RG LA+ALS G+ VE+ + + T Sbjct: 598 STVHVTFPSPGLAAGFAGRGGDALLAQALSTAVGAPVEVAVHVAGSEPAITSA 650 >UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT09_EIKCO Length = 754 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 210/515 (40%), Positives = 292/515 (56%), Gaps = 7/515 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALGKGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET PCG C +CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCETPHEGEPCGQCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I +E AL LL RAA GS+RDALSL DQAIA G G V+ V M Sbjct: 181 QQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLLDQAIAMGSGSVTEADVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D SL++A +G ++A E A R I +++ L E+ LL ++A+++ PA Sbjct: 241 IGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAIGFDSALSELALLLQKLALIKTIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D +++LA + IQLYYQ ++ G+++LP APD G MT Sbjct: 301 AVPADDPE-RDTLQQLAGQLGDEQIQLYYQCVIHGKQDLPLAPDEYAGFVMT-----LLR 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + ++ + + P P+P + PQ L E Q Sbjct: 355 LLAFAPLAAAELPEGSQISGSELHDPAP-KPRPAATPQPDKPPRLAENHIAEAPPAQAEP 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R+ + ++E + + + N + A L + + R + Sbjct: 414 RLPESGHNSQNEHGSFSGSPNNNGRLSQNNPLPQATATAARHTERLPENISGSPNSRHEL 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 + + E P + Sbjct: 474 SPNPNASGNPAPGLAEPGRPYPSEPQPTQTEAVPT 508 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 91/287 (31%), Gaps = 7/287 (2%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + + P P + PT T+ Sbjct: 460 PENISGSPNSRHELSPNPNASGNPAPGLAEPGRPYPSEPQPTQTEAVPTAFESNPPWDDA 519 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + ++ + ++ + R Q +P A ++ E+ Sbjct: 520 PPPAGFETRQPDSPPSSGLAETEPSQNPANEFPHSRNQNDSLPQHKHDAASRNESGLGSE 579 Query: 481 TTPVMQQKEVVATPKALKKALEHE-KTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVEQ 538 P +Q + +P +A +TPE A + D W V+ ++ + Sbjct: 580 RLPETEQSGFLQSPNGQTEAQSAAAETPEHTGTAALPLPDADTWPHIVAAIAPKIGAAQM 639 Query: 539 VALNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL-TIVEDDNP 594 A + + + + L + + + +R Q++ + L+ G V + TI + Sbjct: 640 SAQHTACLGYDPQQHLLTLAVAEAGQVSISREHIQRIEQHLAAAYGHPVSIRTIDWPADG 699 Query: 595 -AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 A TP +Q + + QA+ + D+ Q + F A ES+ Sbjct: 700 NAAETPAMRQQRLRQAARDQAQSLLEQDSAAQDILNLFGARWLPESL 746 >UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Leptospirillum sp. Group II RepID=B6AMH2_9BACT Length = 540 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 170/513 (33%), Positives = 247/513 (48%), Gaps = 3/513 (0%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS LARKWRPQ F+D+VGQE V+ AL LS G++ A LFSG RGVGKT++AR+LA Sbjct: 1 MSTILSLARKWRPQLFSDLVGQEFVVRALTGTLSSGKLPQALLFSGDRGVGKTTVARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NCE G T PC CD+C EI +G D++EID AS T VED R L + ++Y P R R Sbjct: 61 KAINCEKGPTVNPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRSLREGIRYLPFRSR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +VY+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F ++L Sbjct: 121 SRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQHFRFRSLG 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V +I +LE+I+ +E ++ L L+ARA+ GSLRDALSL DQ GD S + + Sbjct: 181 VPEITAKLENIVRQELLSFPRAILNLIARASGGSLRDALSLLDQIRFLGDTPRSVEETAL 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG L+++++E N + + + A GI+ A L + + + M L Sbjct: 241 FLGMAGGLPEKKLLDSLLEGNLKNALENGDRILAMGIDPRATLRSLASKVRDLLMSSLLE 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + A + ++ LL G + +P + + L R + Sbjct: 301 CPLTDPRFAWDESEVPETPLPGAFFLEQMLSLLLEGEMGIRKSPQPSITFLLCLCRIVHI 360 Query: 360 HPRMPLPE--PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PLPE + + + P + A QQ Q Sbjct: 361 QNILPLPEILDRLSKTGLSSSPPEPTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQ 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 L+R + A A + + L + + + + + A ++ K Sbjct: 421 ILERCRDAGPAVLELLEHCPVKKLSSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIP 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 ++ + + A H E A Sbjct: 481 FELVVSTDSSDKSPEPDSSDALARNHPLVREAA 513 Score = 44.6 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 13/154 (8%), Positives = 29/154 (18%), Gaps = 14/154 (9%) Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV-EQVALNA 543 E + W + + ++ + Sbjct: 380 SSPPEPTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQILERCRDAGPAVLELLEHC 439 Query: 544 -WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 K+ S L ++ + E + G EL + D + P Sbjct: 440 PVKKLSSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIPFELVVSTDSSDKSPEPDSS 499 Query: 603 RQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 ++ F E+ Sbjct: 500 DALAR------------NHPLVREAASLFGGEVI 521 >UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Anaerococcus RepID=C2BD41_9FIRM Length = 560 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 116/357 (32%), Positives = 205/357 (57%), Gaps = 1/357 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+ F V+GQ+ V+ L N + HAYLF+G RG GKTS A++ AK Sbjct: 1 MT-KALYRQYRPKVFEQVLGQDKVINVLKNQIKNKNFSHAYLFAGERGCGKTSAAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC +PC C+NCR IE+ +D++E+DAAS +++D R+L DNV Y PA ++ Sbjct: 60 AINCLNPKDGSPCLECENCRAIEEETSLDVVEMDAASNRRIDDIRNLRDNVIYPPANLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP+H+ F+LATT+ K+P TILSR +F +D Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRVQKFEFNKIDS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++++ E A+ L+ A+G++RDALS+ DQ ++ + + V + Sbjct: 180 SKIKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSILDQVLSFNKKEFMLKDVEFI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ ++ LV +++ + + + + + G ++ ++ + ++++S Sbjct: 240 LGSVGFEKINKLVTSIIVKDQRQSLNDLLDIRNDGKSNLDIVDSLINFYRDLMVLKVSGD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E I I L ++ + + + E+ +LR + Sbjct: 300 DMDFENQDRLNFLKEKVDEISLDRILTSLDVLNDYCIKINNSSNTDILSEVLVLRLI 356 >UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F0Z1_ACIC5 Length = 698 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 192/694 (27%), Positives = 300/694 (43%), Gaps = 64/694 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARK+RPQ F+DV GQEHV L N L+ GRI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MAYQVLARKYRPQRFSDVAGQEHVTRTLLNALAQGRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCETG----------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 LNC T T PCGVC++C EI VD++EIDAA+ +++ R+L + Sbjct: 61 ALNCRTPIGSTTGSPQRPTPEPCGVCESCEEIRLSNAVDVLEIDAATNRGIDEIRELREA 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +Y P+R R+K+Y++DE H ++ +FNALLKTLEEPP+HV F++ATT+P+ +P TI SRC Sbjct: 121 ARYRPSRDRYKIYILDEAHQITDAAFNALLKTLEEPPDHVVFMMATTEPENIPQTIRSRC 180 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--- 227 F A+ + I QL I +E+I E AL LLA A +GS+RDALS+ DQAIAS Sbjct: 181 QHFSFHAVKFDDILAQLRAIATQENIVAEDAALALLAEAGDGSMRDALSIMDQAIASARL 240 Query: 228 --GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 G + +A+ ++G++ + L+EA+ E V+ +N G L + Sbjct: 241 ENGQPHLDAEAIRELMGSVPNTVFERLLEAISENQSAAVLEELNRLLNAGNSPVQLARQF 300 Query: 286 LGLLHRIAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + L M ++ L R+ A D+ + Q +L EL Y Sbjct: 301 VRYLRNTIMAKIGGEQTDLLQISPDERARVGRSALLFSEEDLTRFLQIMLRTFDELNYRQ 360 Query: 344 DRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 ++R +E+ L++ + +P+ E A + + S AP V Sbjct: 361 EQRFHLELGLIKLVHLQRLLPVEEFLSQLPPGTGAARSISSATSSPAASRPSPAATAPPV 420 Query: 404 -------------------------PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 P + + + A A E A Sbjct: 421 RATPPPRPAPAAPASTPEPSRPAFSPFEADRQRKITSEDTAPAPVAAPSAPSIEAATPAP 480 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEK-------------APAKKEAYRWKATTPVM 485 + + + S+ A PVP+ + A ++ A+ V Sbjct: 481 SVTTPSVNSVPVTSLPIAPPAEPVPAPMAAQPAPAAPSIPEPVAASRPLTPLEAASRAVE 540 Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL--PKLVEQVALNA 543 + + + E LA+ AAEA A S L + + Sbjct: 541 AAPAKPSMRVGVAEPERTEGALALASAPAAEADLDHIAQAVCSALEREGHGTASVLLSSG 600 Query: 544 WKEESDNAVCLHLRSSQRHLN--NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + + + + + L+ +K+ + G+T +L V + + Sbjct: 601 NWTQQGDTIQVEVAIKRMMLSLTMNAEAEKICKNAMRSIGATQKLVFVPGE-GNRAAGSK 659 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 AI + A E + +Q + F E+ Sbjct: 660 PAIAITGSIQSAALE----NPLVQKAKELFRGEI 689 >UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Actinomycetales RepID=DPO3X_MYCBO Length = 578 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 160/552 (28%), Positives = 245/552 (44%), Gaps = 26/552 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TA PCGVC++C + +D++E+DAAS V+DTR+L D YAP + R++V Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R L I +E + + L+ RA GS RD LS+ DQ +A + D V+ +L Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ + + I G + ++L + ++Q P A Sbjct: 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + RMRE A I + Y + + G E+ A R+ +E+ R L Sbjct: 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361 Query: 358 ------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 A + E R + AP AV P+ +P+ P + P L T + Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPAS 421 Query: 412 VLAARQQLQRVQGATKAKKS----------EPAAATRARPVNNAALERLASVTDRVQARP 461 ++ + + K A A + R+ + Sbjct: 422 SEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQR 481 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 L +A W+ + E A + + A + +RD Sbjct: 482 NADVLAEALKDALGVNWRVR---CETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRD 538 Query: 522 PWAAQVSQLSLP 533 +++ Sbjct: 539 EEEHMLAEAGRG 550 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 134/451 (29%), Positives = 219/451 (48%), Gaps = 38/451 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F D+VGQEH+ L N L L +I+HAY+F+G RG GKT+ AR+LAK LN Sbjct: 2 EALYRKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C +C+ I+ G +D+IE+DAAS +++ R + + V + P G++KVY Sbjct: 62 CEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+R +FNALLKTLEEPP+H+ F+LATT+P+K+P TI+SRC + + E I Sbjct: 122 IIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + +E AL+ +A+ AEG LRDALS +Q I G+V+ + V LG Sbjct: 182 ISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGGEVTEKIVDEALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ +EA + + E + ++N+ +++ + +++ Sbjct: 242 ISEETIEKFIEATLNNDRELIEKILNDIYIERGDFDTFINQLIE---------------- 285 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + E M +LA Y L KE+ +A ++ + + L Sbjct: 286 KTLEKKEDNMLKLASDF--------YNVL----KEIRFAEEKLLIARLMFLSI------- 326 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + +Q + + + E L +++ Q Sbjct: 327 ---ANRYHGKYSNISNVASTARSSQDNVGTKQLSKNIQDEKITEQNENTLPQSEKMPSAQ 383 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVT 454 K + + L + S Sbjct: 384 LNESVKNEDIQVDLKREEKEEKHLSQNVSQA 414 >UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0ASK9_MARMM Length = 606 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 187/566 (33%), Positives = 274/566 (48%), Gaps = 14/566 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP TF D++GQ+ ++ L N + GRI HAY+ +G RGVGKT+ ARL+A+ L Sbjct: 32 YQVLARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARAL 91 Query: 63 NCETGITATPC----GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N +T P +C I + VD++E+DAASRT V D R++L+ V+YAP Sbjct: 92 NFQTDGIDAPSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIREILEGVRYAPVSA 151 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPPEH KF+ ATT+ +K+PVT+LSRC +F LK + Sbjct: 152 RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRI 211 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG---DGQVSTQ 235 D E + L+ I E + E L L+ARAAEGS+RDALSL DQAI G DG VS Sbjct: 212 DREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLLDQAIVQGSDEDGPVSAP 271 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + MLG D + L L+E + +A ++ G + + ++L +H A V Sbjct: 272 QIRDMLGLADHARVLDLLEQTLTGKTADALAELSSLHDAGGDPVVITRDLLDYVHATARV 331 Query: 296 QLS-PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + P A + A R+ LA + ++ LL G ++ APD EMT+L Sbjct: 332 KAAGPGADLGEAADTVARIVTLAEGQTLGQLTRMWKILLTGLDDVRNAPDALAAAEMTVL 391 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R + +P PE + P A + + P +P+ AP A + + Sbjct: 392 RLAS-AASLPPPEDAARLLAGMPRATSPASGAGEAPGKPEPAPASATGS---ASAAMDRD 447 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A A+ + A A A ++ L D V + A K Sbjct: 448 AAAHRALSAPEAVAQVEQDAPAISGPQTWEALMDLLREKRDIGLQSDVERYVRPAVFKPG 507 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 ++ ++ + + + L+ E+ LA ++ L Sbjct: 508 SFTFQPIEDAPRDLAQRLSRRLLE--WTGERWMILADGSLEGGETWSERRLRLKAERLEA 565 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQ 560 A+ A + +R Q Sbjct: 566 ARHDPAVTEVMRLFPGAEIVKIRDPQ 591 >UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanobacteria RepID=Q3B0U5_SYNS9 Length = 625 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 178/646 (27%), Positives = 280/646 (43%), Gaps = 37/646 (5%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQ L K+RPQ F +VGQE + L N L+ RI AYLFSG RG GKTS AR+L Sbjct: 1 MSSTYQPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC+ G T PCG CD CR I G +D+IEIDAAS T V++ R+L++ ++AP Sbjct: 61 ARSLNCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 + R+KVY++DE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC +F + Sbjct: 121 QARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFR 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + ++ + L I +E IA +P A+ ++A+ ++G LRDA SL DQ ++ + A Sbjct: 181 RIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQ-LSLLPPPIEANA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + + + L+L +AM + ++ RG + A+L + G+L + ++ Sbjct: 240 VWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLVLMA 299 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P ++ ELA++I T + + L ++L + R+ Sbjct: 300 AAPNRPELTGVSPQFRDQLPELAKSIGRTRLLQWQAQLRGAEQQLRQSVQPRLW------ 353 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 L L EP P + AP P A P VP + TT + Sbjct: 354 --LEVLLLGLLAEPMSPALATAPRTPQATPAPAAVPVLVTADAPTPTATTPAATTPATPS 411 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + P AT + + L S+ + + Sbjct: 412 PSPAQAKTPELPTVAAVAPTPATSGTNLPELWQQILGSLELPSTRMLLSQQAQLVRLDAN 471 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + M + A+ A + +L + + AI Sbjct: 472 RAVVQVAGNWMGMVQSRASLLEQAVAKALGGSRQLIIEASTSAIAATSAPTAP------- 524 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + L + +A + + T + P Sbjct: 525 ---------LVQPPPQTAPAPVETETPQLPKTEVVPAVVDASTPITRLTTQ---EPAKPP 572 Query: 595 AVRTPLEWRQAIYEEKLAQARE---SIIADNNIQTLRRFFDAELDE 637 A +P+ Q + E ++ D + L FF+ ++ + Sbjct: 573 ATPSPVAISQPVQAEPAQNPANPSPALGLDRQAKNLADFFNGQVLD 618 >UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Enterobacteriaceae RepID=DPO3X_BUCBP Length = 370 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 182/362 (50%), Positives = 269/362 (74%), Gaps = 3/362 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +LA+KWRPQTF DV+GQ+++++A++N L LGRIHHA+LF G RG GKT+IAR+LAK Sbjct: 1 MNYHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+ PC C NC E+EQG F+DL E+DAASRTKVED ++LLDN++Y P++GRF Sbjct: 61 SLNCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSR+SFN LLK +EEPP+H+KF+LATT+ +K+P TILSRCLQF LK +++ Sbjct: 121 KIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I + +IL++E+I +E +AL L+++ +EGSLRDA++LT+Q I+ G G ++ + V Sbjct: 181 NEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKT 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +DQ L ++ ++ + + ++ + I +E +LVE+L LLH+I+++++ P+ Sbjct: 241 LGMLYEDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQISIIKIIPS 300 Query: 301 ALGNDMAAIEL---RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ND + ++++A DI LYYQT L+G+KEL APD+++ +EMTLLR Sbjct: 301 IKLNDTKYSKNMQHAIQKIAELSNYNDIYLYYQTALLGKKELHIAPDQKISIEMTLLRMF 360 Query: 358 AF 359 Sbjct: 361 NL 362 >UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium diphtheriae RepID=Q6NJY2_CORDI Length = 707 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 145/526 (27%), Positives = 233/526 (44%), Gaps = 7/526 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + +D+ E+DAAS V+D R+L D YAPA R+++ Sbjct: 62 VEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNRSVDDMRELRDRAMYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSRTHHYPFRLLTPQS 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + EH+A E L+ RA GS RD LS+ DQ IA +G + +L Sbjct: 182 MRGLLERTVASEHVAVEDSVYPLVIRAGGGSPRDTLSILDQLIAGAGPDGLDYNLARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + ++A+ + + ++++A G++ ++L + ++Q P A Sbjct: 242 GATDDTLIDTTIDALAGNDNAALFQVVDDAIEAGLDPRRFATDLLDRFRDLMVLQSVPDA 301 Query: 302 LGNDMAAIELR----MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + +R+ A +P + + G + L A R+ +E+ + L Sbjct: 302 LTLGLVDAPTDRGDILRDQATHLPAGEAARLAALVNDGLRGLKGATSPRLLLEILCAKML 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + AP + + P + Sbjct: 362 LPSAQPAATATAPAAAAPAPAPTEIPAKYERRSVRLAREAAARKNAEAPAPEPAPEPKPE 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + A + N+ L S + R + + A+R Sbjct: 422 PKPEPRDGFATIQEKWATISDVIFKANSVAGILLSQATLLGLRDDSTLVIGHNTGALAHR 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + L +E + A +E + W Sbjct: 482 INDPQHAGSIVTAIKQETDLDVTIECVVGTDPKAAGFSEPENKKVW 527 >UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PKZ6_9PROT Length = 763 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 173/616 (28%), Positives = 273/616 (44%), Gaps = 57/616 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP++F ++GQ+ V +LA+ L GR+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKSFEQLIGQDAVAKSLAHALDSGRLSHAYLFSGLRGSGKTSTARIFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T PC VCDNC +GR +D+IE+DAAS K++D R+L++ +Y PA RFK++ Sbjct: 62 CDKGPTGKPCEVCDNCVMANEGRHIDIIEMDAASHRKIDDIRELIEQTKYHPASARFKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ + NALLKTLEEPP +VKF+LATTDP KLPVT+LSR F K + + Sbjct: 122 IIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRTQHFRFKPIAKSAV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L IL E+IA+E AL++LAR+ GSLRD L+L DQAI ++ +A++ MLG Sbjct: 182 VAHLAQILKTENIAYEDGALEILARSGSGSLRDTLTLLDQAIIFSREGITQRAIADMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +++ ++ + + +I E E ++ EM+ L Sbjct: 242 LDPAKIGEILDIVLRQDRAGAIEIIKEVEN--YNAETIIDEMIANLKD------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + +++ L + L +PD + M + + Sbjct: 288 --------KFLRRDAKFSLLMYERFFRILAGAKSMLAISPDNTYAISMMIFMMMEAVNLR 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E +S + + P +Q A + Q Sbjct: 340 EIDELIEVGRSLDQG-------------------EDYASASAPNLNAQSSAPNFRSNSNQ 380 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK-EAYRWKATT 482 A +EP A A +A+ + S T + + A +++ Sbjct: 381 SAAFTSNNEPGGAAFASSDRGSAISGVPSFTASAKRPVNTAQNSGAGGAAKQSHDANGEI 440 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 + + ++K ++E AK+ + K VE Sbjct: 441 KPGAAAQAQNSSSSVKTGAQNEIYENFLAKIYDRDYDMGE--------KFSKCVE----- 487 Query: 543 AWKEESDNAVCLHLR-SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + + L R Q R + + L L G ++ I + P + Sbjct: 488 -FLKFERGTLYLLSRAQGQDREYLRKGSRAINSVLKSLFGEGAKIKIEQSAPQNGDVPAQ 546 Query: 602 WRQAIYEEKLAQARES 617 + + A A +S Sbjct: 547 SERDQNSARGATATQS 562 >UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax=Mycoplasma RepID=A5IZC8_MYCAP Length = 614 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 142/499 (28%), Positives = 245/499 (49%), Gaps = 16/499 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L RK+RP+ F DV GQ++++ L N + +I HAYLF G RGVGKTS+AR+ A Sbjct: 1 MSYKALYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFAN 60 Query: 61 GLNCETGIT--ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC + C +C+ +D+IE+DAAS V+ R+L D +Q+ P+ G Sbjct: 61 LINCYHNNDDYSKLCQICEE----NGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSVG 116 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +K+Y+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDPQK+P+TILSR +F+ + + Sbjct: 117 NYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRM 176 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + Q++ IL +E I ++ AL +AR A GS+RDALS+ DQA A G+G + V Sbjct: 177 SNDTLVKQIKSILEQEGIKYDAEALPYIARLAVGSMRDALSIIDQANAYGNGYIKFSDVM 236 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-QL 297 G +D + ++ ++ E + L+ + GI+ + L+ +L + + + Sbjct: 237 YSFGITSNDNLIKIINSLYNGKSEEALMLLQDLKNGGIDPKQLVESLLSIFKDFIIYEKT 296 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRA 356 +L + + E +L Y+ + KE+ YA + +E+ L++ Sbjct: 297 YKDSLFEILTLDQFNTLEFDLRYAVNSSELLYKLV----KEMYYASGNLFQLIELYLVKM 352 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + +V Q + + ++ Q Q ++ +++ + + Sbjct: 353 AREIEPKEEKKEQVIMQVDKDEKKARIDSINEILSQTQEIVLESNN----DSSINDILSS 408 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 L QG +++ SE + ++ + K K + Sbjct: 409 DILTNEQGDSESDFSEESPLINTSEIDLTQFDEDEPKIKLFPKYDKSFDYAKEFTPKFSV 468 Query: 477 RWKATTPVMQQKEVVATPK 495 + ++ ++ + + Sbjct: 469 EQLKSALILSDQQQLKSAS 487 >UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM34_MYCA5 Length = 647 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 144/498 (28%), Positives = 238/498 (47%), Gaps = 21/498 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RP F +V GQE+++ L N + + +I HAYLF G G GKTS+A++ A L Sbjct: 5 YLALYRQYRPNKFDEVKGQENIIRTLTNIIKMQKISHAYLFCGPHGTGKTSVAKIFANTL 64 Query: 63 NCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C R +D+IEIDAAS T ++D R+L + +++ P ++K Sbjct: 65 NCSHSSDLLEPCQECIE----NIDRNLDIIEIDAASNTGIDDIRELREKIKHLPTHSKYK 120 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNALLKTLEEPP+H F+LATTDPQK+P+TILSR +F+ K +D Sbjct: 121 IYIIDEVHMLSKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTILSRVQRFNFKRIDEN 180 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVSAM 240 I L H+ ++EHI +E AL+L+A A GS RDALSL DQ I + + +++ V ++ Sbjct: 181 VIVMHLMHVYDQEHIDYEKNALKLIASLANGSFRDALSLADQVSIFATNSKITLVEVESL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ + L+ M N + V+ + + G + E L+ +M+ +L + + Sbjct: 241 FGLINLKNVIDLINLMASHNIKEVLQKLGKLIDAGADIERLVTQMINVLKDFLVYSRTED 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A +++ + ++ L I + L+ KEL Y+ +E+ ++ Sbjct: 301 AALLEISDVTD-LQTL--KISIDKTYEFISELVNLLKELKYSDLPLQTLELGFIKMATLK 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 E+ ++P Q P P P P+ Q ++ Sbjct: 358 THDENFVNEIVMPKAKEISP-------QTTPMKDFEIDVEPNSPTPKKR-----MSQNVE 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ + LE+ + + + + + A + + Sbjct: 406 KINSIFDLSSIANKDIEVKEISVDEVLEKTSELVLKEKTQEFEMADVENDILSLDSSQTS 465 Query: 481 TTPVMQQKEVVATPKALK 498 + + E P L Sbjct: 466 DFEINENFEETTNPPELD 483 >UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S3_COPPD Length = 522 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 153/467 (32%), Positives = 240/467 (51%), Gaps = 28/467 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RPQTF +VVGQ HV L L +I HAYLF+G +G GKTS AR+ AKGLNC Sbjct: 2 ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 ETGIT+ PC C++C+ I +G +D+IEIDAAS V++ R+L + V+Y PA+ R+KVY+ Sbjct: 62 ETGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSRYKVYI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDE HML+R +FNALLKTLEEPPE+V F+LATTDPQK+P T+LSRC +F K L +++ Sbjct: 122 IDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDEVF 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 LE++ E +++ AL+L+A ++G++RDAL+L +Q +G+VS + +L + Sbjct: 182 QILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLNVV 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR-IAMVQLSPAALG 303 +D+ L L++ + + + + E G+E L M L+ R + + P + Sbjct: 242 EDEVILDLLKTAFA-DMDEAVERLAELMESGVEPMELFRTMKSLVRRSVFRNKPWPRDVA 300 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +M + + + + + + LL L + Sbjct: 301 LEMFRVLESYNFI----------------------MERTEFPAVAL-VALLNELRSKANL 337 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 P+ A + P +P + Q+ + LA + + V+ Sbjct: 338 GTPKGGESAPLSEKNADKEKTRVAEKPQEPAAETQKE---NKHSEKREELANDVEAEAVK 394 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 AT+++ + A V + + +Q+ E P Sbjct: 395 EATESESKREVSDAAATTVTAVEEKESSQDATDLQSWIENVRSEYFP 441 >UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MHU5_BRAFD Length = 1122 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 161/625 (25%), Positives = 251/625 (40%), Gaps = 37/625 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP++FA+V+GQ+HV T L L GRI HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPESFAEVIGQDHVTTPLRRALRAGRIGHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R R+KV Sbjct: 64 VEGPTDVPCGQCDSCRDLANGGSGSLDVVEIDAASHGGVDDARELRERASFAPVRDRYKV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + + Sbjct: 124 FIIDEAHMVTSAGFNALLKLVEEPPEHVKFVFATTEPDKVIGTIRSRTHHYPFRLIPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + E + + L+ RA GS RD++S+ DQ +A +GD + A+L Sbjct: 184 LGPYLEEVCAAEQVQVGEGVMPLVVRAGGGSARDSMSVLDQLMAGAGDDGLDFPTAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + A+ E + + + A G E + ++L + + ++ P Sbjct: 244 GFTDTALLDRAITAVAERDAASLYGAVEHVLATGHEPRRFVEDLLERMRDLIVLSAVPDK 303 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + MR A P D+ L + + A R+ +E+ R + Sbjct: 304 GTDLLPQVPADELEAMRGQAALFAPADLSLCGDLVHETLSTMSGATSPRLHLELLAARLV 363 Query: 358 -------------------------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 A P A A Q + Sbjct: 364 LRDERAALAAADGPAPAADRRAPAPAGPGAPARPAEAQGAPGGASGAREEARRIAQEKVE 423 Query: 393 PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS 452 + PE + A A + + A Sbjct: 424 AARQARGGRGQAAPEQRDRQGAPPAASAPAAQAPAPQAPAAQHSAPEPAAPAPEQPAPAG 483 Query: 453 VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAK 512 P + APA + P A A P AA Sbjct: 484 PAQPAGPGQAPGSAAPAPAAHAPGSAAQPPAGDASAPPASGPPASAPAAPGPSAPAPAAG 543 Query: 513 LAAEAIERDPWAAQVSQLSLPKLVEQVALN---AWKEESDNAVCLHLRSS--QRHLNNRG 567 R W+A + +L + ++ + + + R+ + Sbjct: 544 GLDADEVRGHWSAILDELQQIRRPSWALISQNGTVNGAHGSTLVIGFRTEGLVNAFHRGT 603 Query: 568 AQQKLAEALSMLKGSTVELTIVEDD 592 A Q LA+A+ + + V + V + Sbjct: 604 AAQNLADAVRRIMHTEVTIEAVVGE 628 >UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES0_ELUMP Length = 627 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 150/459 (32%), Positives = 232/459 (50%), Gaps = 14/459 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L+ K+RPQTF DVVGQE + L N + LGR+ HAYLF G RG GKT+ AR+ AK L Sbjct: 11 YISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKAL 70 Query: 63 NCE---TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG 118 NC A+PCG C C EI G +D++E+DAAS T+V+ R+ ++D V A R Sbjct: 71 NCTGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIIDTVALAATRD 130 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK++++DEVHMLS SFNALLKT+EEPP HV F+LATT+ K+P TI SRC F + + Sbjct: 131 RFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRPI 190 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L + +E+I EP+A+Q++A A G+LRDAL++ D+AIA DG ++ + V Sbjct: 191 TQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELVI 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG + +D + V+A+++ N + + G + + L ++ L + + + Sbjct: 251 DMLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLFYLSIG 310 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA ELA+ P+ I + + E +A + E+ + + Sbjct: 311 HGHEPFSGAA------ELAKKTSPSYIAGLTRKINKVIDETKFADSPLITAEVGIFTVM- 363 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L + T + P Q + E T + + A+ Sbjct: 364 -DSCIDLDAFIKRLEKLESALSGNSPTEEEKKNLNSFNPSQTKDNNI-EITQKPVTAKIT 421 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 ++ + K + A + + A + + + Sbjct: 422 VENIGQEAPKKAPKVVHA-KIADIPLPAKKSTTAQPENA 459 >UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3Z5_DESDA Length = 741 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 160/530 (30%), Positives = 240/530 (45%), Gaps = 23/530 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA ++RPQTFA V GQ+ V L+ + R AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLASRYRPQTFAQVAGQDMVKAVLSRAAAEDRPAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C CR+I QG VD+ EID AS VED R L + + YA GR+ Sbjct: 61 ALNCEHSPGPEPCNECAQCRKITQGVHVDVTEIDGASNNSVEDARSLRETIGYAAMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R++FNALLKTLEEPPE V F+ ATT+ K PVTI+SRC F + L Sbjct: 121 KVFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQHFVFRHLSK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +L +E++ E A++LLAR A GS+RD++SL DQ +A G Q++ A + Sbjct: 181 DALVEHLSGVLRKENVTFEDSAVRLLARRAAGSVRDSMSLLDQTLALGGEQLTAAATRQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L EA+ + V L + +G++ + E+ G L + +++ A Sbjct: 241 LGLAGQEMFAELFEALHAQDCPAVAGLCRQILQQGVDIGFFVRELAGNLRNLFLLRQGGA 300 Query: 301 ALGNDM---AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+ + + A + LA + +Q L ++ + +P Sbjct: 301 AVASSLQLPADEAALWQGLAPRFSTAHLHAAWQMTLDAQRGIVQSP-------------- 346 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P L + + P +TP Q+P P A P +TS ++ Sbjct: 347 --EPAAALELLLLNLALLPQLLPVGQVTPDQMPAGPPGAAPADANQPPSGSTSGPASSMP 404 Query: 418 Q----LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + A A P + + A A + E+A Sbjct: 405 HGGYRSGQPPHAGAEAARHNAGTPDDAPAASGMGKSAARPRATTTAARPTTDGEEAETPD 464 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 A + ++ T + P+ + + + Sbjct: 465 PAPACDHSRNQPSGQDENLTRGQNSPHSNQGRHPDKSHTSDQRDVRAEGR 514 >UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C546_SPHTD Length = 589 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 229/484 (47%), Gaps = 26/484 (5%) Query: 4 QVLARKWRPQTFA--DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 Q L RK+RP++FA + VGQEH+ L N + L R+ HAYLF G RG GKTS ARLLAK Sbjct: 16 QSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKA 75 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC A PC C+ C I G VD+IEIDAAS V+D RDL + V+YAP + R Sbjct: 76 VNCLAPDPEARPCNACEACEAINAGTAVDIIEIDAASNRGVDDIRDLREKVKYAPTQLRV 135 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDE H L+R +FNA LKTLEEPP HVKF+LATT+P KLP TI SRC +F + + Sbjct: 136 KFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQRFDFRRFAL 195 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-----QVSTQ 235 + L + E + E AL+L+AR A GS+RDAL L +Q G+ ++ Sbjct: 196 SDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKLVITAD 255 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV + G D+ ++LV+A+ + + + +I EA G + L +++ L + ++ Sbjct: 256 AVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLRTLLLI 315 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R A ++ +T L ++ +E+ L+ Sbjct: 316 RAGGT-----SDEAGDDARAQAEQFTVAELAALVRTFSSIEGALNKGSYAQLPLEIALV- 369 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 E V A + P P +P A +P P P + Sbjct: 370 -----------ESIVGATPAAAPPAESPQPPPIRPAEPARAVAPSPR-PEPARRQPPVRE 417 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + R + + P A RP +ALERL + +++ + A Sbjct: 418 PSPVLRTVRPVDSPRPAPTPAATPRPAAGSALERLVASWGQIRRDVKMANSRVAALLSSV 477 Query: 476 YRWK 479 Sbjct: 478 DPLD 481 >UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZL2_SULD5 Length = 546 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 148/408 (36%), Positives = 217/408 (53%), Gaps = 22/408 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M +QVLA K+RP +F ++GQE + L++ L+ R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MPHQVLALKYRPSSFDKLIGQEAITQTLSSALNQNRLSHAYLFSGLRGSGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G ATPC VC++C + R +D+IE+DAAS ++D R+L+++ +Y P+ RF Sbjct: 61 ALVCEQGPNATPCDVCEHCLSANENRHIDIIEMDAASNRGIDDIRELIESTKYKPSSARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLTTQAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRVQHFRFKQIKQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L HILN E I +E AL++L+RA GSLRD L+L DQAI G ++ + V+ M Sbjct: 181 SDVINHLCHILNLEKIEYEKEALEMLSRAGNGSLRDTLTLLDQAIIYSKGYITPEHVATM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD Q +L A++ N ++ LI E E ++ E++ L Sbjct: 241 LGLLDPKQLETLFSAILNGNKTELLGLIKTL--ESYECEVVMDELIAYLKN--------- 289 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E R + +++ L + L + + + L + + Sbjct: 290 -----------AFFEQDRRFSTLLYERFFKILSEAKSLLYINANNGFILSLVLFKMVEAT 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + E ++ P + P T +P+ Sbjct: 339 HIKTIEEMIDSLENEKLQMPLHTPMQEEETAHPLLLETSMETAHVPDQ 386 >UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 Tax=Anaerococcus RepID=C7RH57_ANAPD Length = 626 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 116/377 (30%), Positives = 202/377 (53%), Gaps = 1/377 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+TF +V+GQ+ V+ L N + HAY+F+G RG GKT+ A++ AK Sbjct: 1 MA-KALYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + +PC C+NC+ I+ +D+IE+DAAS +++D R+L DNV Y P + ++ Sbjct: 60 AINCLHPVDGSPCLECENCKAIDDESTIDIIEMDAASNRRIDDIRNLKDNVIYPPNKLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP H+ F+LATT+ +P TILSR F ++ Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSRAQNFEFNKIEK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++ I E A+ L+ R A+G++RDALS+ DQ ++ V + Sbjct: 180 GKIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSILDQVLSYDTKSYKLADVENL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L ++ N ++ ++ I + ++ ++ I + ++S Sbjct: 240 LGVVDFYDIDKLTNSIFSFNQKKALSYIFSLRESNKSNKDIIDSLINYFRDIMLYKMSED 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D +++ A I + L ++ + + + VE+ ++R + Sbjct: 300 PDLFDNEERFDFIKKRAGEIEIDRLLDLLDILNEYSAKIRLSDNTDLIVELMVIRLINSK 359 Query: 361 PRMPLPEPEVPRQSFAP 377 L ++ Sbjct: 360 DVKSLDSRIRALEANNE 376 >UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8P5_CAPOD Length = 569 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 149/638 (23%), Positives = 261/638 (40%), Gaps = 74/638 (11%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M++ V ARK+RPQ+F DVVGQ+ + L N + + A LF+G RGVGKT+ AR+LA Sbjct: 1 MNHFIVSARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +N +T E ++ E+DAAS V+D R L++ V+ P G+ Sbjct: 61 KKINEQTSGVED-----------ENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGK 109 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + Sbjct: 110 YKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRIT 169 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + IR L++I ++ I E ALQ++A+ A+G++RDALS+ D+ ++ +++ QA S Sbjct: 170 INDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSE 229 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-S 298 +L LD + + + +++ ++ N++ A+G + + + + + + + Sbjct: 230 ILNVLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFDGNHFIAGLASHFRDLMVCKNPT 289 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +L + + E + + + + ++R+ VE+ L++ + Sbjct: 290 TISLMEVGEETQKKYAEQSVRATVPFLMEAIAIANDCDLKYRTSKNQRLLVEVALMQLAS 349 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + A V T P AP + TT+ L Sbjct: 350 LTYEGDKKKNDGRFIIPAYVFNGQSHTTEVR--INSQTPIVAPPINYTNTTTATLNPNIP 407 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + K +++E + + V+ + V P E + W Sbjct: 408 IIS-----KTERTEAVSNFSIKSVHLKTEHQ--RNFKEVVIDPNTLPRESFSEETFNQFW 460 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + K LK Sbjct: 461 ERYIDELLVKGERIQASILKI--------------------------------------- 481 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS-TVELTIVEDDNPAVR 597 A + L + S+ + + KL L + + + I ++ Sbjct: 482 ----AILRLEGTTIHLEVSSNTAKNDIVQMEHKLLNYLHKSLQNYDLTIEISVNE----- 532 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 E + I + + + + +Q RR F+ L Sbjct: 533 ---EIAKRIVVTPEDKYEKLLEENPILQEFRRAFELNL 567 >UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax=Bacteria RepID=Q6KIL7_MYCMO Length = 720 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 132/413 (31%), Positives = 219/413 (53%), Gaps = 6/413 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RP+ F ++ GQ+H++T L N L+ ++ HAYLFSG RG GKTS+A++ A Sbjct: 1 MDYKALYRKYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAA 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE I +C+ C E +D+IEIDAAS V++ R+L + V+Y+P++ ++ Sbjct: 61 ALNCEHEIQKE--KICNLCVE-NLDNNLDIIEIDAASNNGVDEIRELREKVKYSPSQYKY 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKTLEEPP+H F+LATTDPQK+P+T++SR +F+ K + + Sbjct: 118 KVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRITL 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + QL+ +L +E+I AL L+A+ AEG LRDALS+ DQ + ++ + V + Sbjct: 178 PILEKQLQEVLTKENIRINKNALTLIAKMAEGGLRDALSIADQISIFSNNNITEKEVDEV 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 + + + + + + + V+ IN GI E L++ ++ ++ + + A Sbjct: 238 FSLVSIEDQIYFLNLIYKKDTTTVLRTINNYIESGINIEKLVINLIDIIRDFIVFNKTHA 297 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E ++EL I L+ +L ++ E+ +L+ L Sbjct: 298 SNLLEY-LNEEDLKEL--EIDIHFAYQTKDALMPLLSDLKHSEIPTRNFEIIILQLLHES 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R + E + + + A P T + Sbjct: 355 KRDEILEQNKKNSLSEFFKNEDTQPIHLADSKVKQKNENAIKFTAPTETFETE 407 >UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 Tax=Rhizobiales RepID=B2ICM3_BEII9 Length = 651 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 172/575 (29%), Positives = 271/575 (47%), Gaps = 29/575 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP F D++GQE ++ L+N L RIH AYL +G RGVGKT+ AR+LA+ Sbjct: 29 YLVLARKYRPSRFEDLIGQEAMVKTLSNAFDLDRIHQAYLLTGVRGVGKTTTARILARAF 88 Query: 63 NCETG----------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 N E T +C+ I + R VD+IE+DAAS T ++D R+++++ + Sbjct: 89 NYEVPAENGQPAIEKPTVHMDRFGVHCQAIIESRHVDIIEMDAASHTGIDDIREIIESAR 148 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P R KVY+IDEVHMLS+ +FN LLKTLEEPPEHVKF+ ATT+ K+P+T+ SRC + Sbjct: 149 YRPVSARVKVYIIDEVHMLSKQAFNGLLKTLEEPPEHVKFIFATTEIDKVPITVRSRCQR 208 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 F L+ ++ + L + +E++ E AL L+ARAAEGS+RDALSL DQAIA G GQ Sbjct: 209 FDLRRIEPAVLIDYLASVCAKENVLIEREALGLIARAAEGSVRDALSLLDQAIAHGTGQA 268 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 +S + AMLG D + + L EA++ + + +A + G + +LV Sbjct: 269 DPHSSAQPISATDLQAMLGLADRARIIDLFEAVMRGDMAKALADLKNLHDCGADPAQVLV 328 Query: 284 EMLGLLHRIAMVQLSPAALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 E+ +H + ++LSP R +A T+ + +Q L G +E+ + Sbjct: 329 ELAEFVHFVTRLKLSPHTFDAAATPEELSRGGAMAGTLSVMVLTRAWQILTKGLQEVKDS 388 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP----TAVMTPTQVPPQPQSAPQ 398 P +M L+R A+ +P P+ + + + P +P + + QP Sbjct: 389 PRPLACADMVLVRL-AYAADLPTPDVVLRQLAKTPPSPHGRDGSTDAVSGSRVQPSLPSA 447 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 P++ P TS L A+ Q S P+ L+ ++ Sbjct: 448 SGPSLGSPLVTSSRLGAQAATQAASHMAPLAVSAPSLQPGLAQAPAIRLQSFGALVALAG 507 Query: 459 ARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 + R++ T + A ++ +A + Sbjct: 508 EKRDIQLKTALERDVRLVRFEEGTIEFALAPGASPQLAQTLMRRLQEWTGTRWMVAIASE 567 Query: 519 ERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 + L+L + E+ A + + + Sbjct: 568 TSGG----AAALTLKEQAEKQAAAVRQGIEADPLV 598 >UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=3 Tax=Candidatus Pelagibacter RepID=Q4FNB0_PELUB Length = 557 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 128/388 (32%), Positives = 216/388 (55%), Gaps = 9/388 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VLA K+RPQTF D++GQ+ V ++N + ++ +AYLF+G RG+GKT+ AR++AK LN Sbjct: 6 KVLALKYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLN 65 Query: 64 CETGITATPCGV--CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 C GI C C+NC I +D++E+DAAS+T V+D RDL++ +Y P ++K Sbjct: 66 CSNGIDNL-CKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTTAKYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHMLS+ +FNALLKTLEEPPE++KF+ ATT+ +K+P+T++SRC +F L + Sbjct: 125 IFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSL 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSA 239 ++ + I +E+ AL+L+ + +EGS+RDALSL D+A+ + D ++ A Sbjct: 185 ELFDFIRKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRALLTLDKDKELDLAAAQK 244 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE---MLGLLHRIAMVQ 296 + G D Q + L E + E V+ E +G+E + + + +L I + Sbjct: 245 IFGYFDKSQLIDLFELIFEGKETEVLNTYREIYNQGVEPKIFINDFLELLYYFKNIDSLN 304 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L ++++L+ + + L++Q + +EL ++ + +EM L+R Sbjct: 305 LDGNNFLL-NDEEFNKIKDLSEKVNNETLILFWQFTIKTLEELDIVSNQHLSMEMFLIRL 363 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVM 384 + E + Sbjct: 364 IHLKSIKQESEKYKEDSKLLVESENQTS 391 >UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptospira RepID=B0SRY5_LEPBP Length = 497 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 237/472 (50%), Gaps = 11/472 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS +QVL RK+RPQ F DV+ Q+ + +L N +I HAY+F G RGVGKT+IAR+L Sbjct: 6 MSENHQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARIL 65 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK LNCE PC C +C EI +G D+ EIDAAS + V++ R+L +NV++ G Sbjct: 66 AKRLNCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +++VY++DEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P TILSRC FH + + Sbjct: 126 KYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKV 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 V +++ +E + +E + ++ L +A+ +GS+RD LS +QA+ DG ++ + Sbjct: 186 PVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKLR 245 Query: 239 AMLGTLDDDQALSLVEAMVE-ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 M+G D + +++ + ++ + GI+ + + + L+ + +++ Sbjct: 246 KMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENLFQAGIDLSKFIWDFIEFLNSLLLIKD 305 Query: 298 SPAALGNDMA--AIELRMRELARTIPPTDIQLYYQTLLIG-----RKELPYAPDRRMGVE 350 + A + ++++ R + + L + + +L + + ++ +E Sbjct: 306 NLADRESINIPHEDLQKLKQNYRELDREILVLLAERIFSIHEKLNLMKLRSSYEMKVYLE 365 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + + + + + + + + + PT + Sbjct: 366 IQFRKLILDREKPSVSGLLAKISELTKLVQGDLSNIPESVEPVKKISTPPPTQSATQKKE 425 Query: 411 QVLAARQQLQRVQGA-TKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 A+++ ++ TK ++ + ++ + + + +++ + Sbjct: 426 PTTTAQKENDQIDSNHTKQNENMDSNPLPSKSESQSINKPISTPPSSPEDME 477 >UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 Tax=Bifidobacterium RepID=B7GT66_BIFLI Length = 923 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 266/629 (42%), Gaps = 30/629 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVINHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRMR---- 355 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L L E + AP + M P +A + + Sbjct: 356 ----LELLAARLLAGSESGFATAAPAPVASGMPPAAASSTTSAASGAGASGFAGSSRGGF 411 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A + + + A+ N + L S P+ A Sbjct: 412 AGASHGGFSGAARNQQVAAPQSTASHESVGGNGPVNGLVSDRPAGSPSVQPAVATAAANA 471 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + Q A + + + E + RD + Sbjct: 472 GWGAPAASPAAPAQPVASPAASDNRSIDEKWDAAVAALPETIREYVSRDKVPTVKFGPNR 531 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------STVE 585 L +++ K S +A L + +S + A + +A+ G S V Sbjct: 532 KGLP-CLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPSAVA 585 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 ++ +P + + + +A+A Sbjct: 586 ANGERVESVKRMSPEQLAKVKQQIAMAKA 614 >UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 Tax=Alphaproteobacteria RepID=B0T1T4_CAUSK Length = 632 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 152/377 (40%), Positives = 217/377 (57%), Gaps = 7/377 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLARK+RP+TF D++GQE ++ LAN S GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 82 AYTVLARKYRPRTFEDLIGQEAMVRTLANAFSSGRIAHAFMLTGVRGVGKTTTARLLARA 141 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN ET P +C+ I +GR +D++E+DAASRTKV++ R+LLD V+YAP Sbjct: 142 LNYETDTVHQPSVDLTIDGRHCKAIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVE 201 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP H KF+ ATT+ +K+PVTILSR +F L+ Sbjct: 202 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQRFDLRR 261 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 ++ + + I +E E L L+ARAAEGS+RD LSL DQAI G+ V+ Sbjct: 262 VEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLLDQAIVQGERGSTVTAA 321 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG D Q ++L E ++ +A G + +++++L H ++ Sbjct: 322 VVRDMLGLADRGQTIALFENVMSGKPGDSLAGFRALWGFGADPAVVMLDLLDHCHGASVA 381 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R+ + + +Q LL +E+ APD EM L+R Sbjct: 382 KALGPDALTLPKEQAARLTAIGAQTSAGTLSRLWQMLLKAHEEVRRAPDAMAAAEMALIR 441 Query: 356 ALAFHPRMPLPEPEVPR 372 + +P PE + Sbjct: 442 LC-YAADLPGPEEALKA 457 >UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z5_MYCS5 Length = 609 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 125/357 (35%), Positives = 208/357 (58%), Gaps = 8/357 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RPQ F +++GQ+H++ L N +S +I HA+LF+G +G GKTS AR+ AK Sbjct: 1 MKYKSLYRKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + +C++C G D+IE+DAAS T V++ R+L +NV P ++ Sbjct: 61 ALNCSHSEVRS--QICESCPNQNSG---DIIEMDAASNTGVDEIRNLKENVDQLPFESKY 115 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATTD QK+P+TILSR F+ + + Sbjct: 116 KIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISE 175 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QLE+ILN+E+I+ E AL L+A+ + G LRDAL++ +Q + ++ ++V Sbjct: 176 KQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRKN 235 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D+ + ++ + N V+ +N+ GI+ ++ ++ L+ + + + Sbjct: 236 FGIASNDEIIQVLNDLYSKNISDVLKKLNDLKLWGIDPFLFVLNLISLVKEYLLFRKTGD 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + +L I + +L + +E++ L+ L Sbjct: 296 DSFLNYYSEKE-LNDL--KINDSFAYRVSSSLYDLLINVKRTEYPFEIIEVSFLKLL 349 >UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6I0_MYCCR Length = 665 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 136/526 (25%), Positives = 245/526 (46%), Gaps = 18/526 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y RK+RPQTF DVVGQE ++ +L N ++ + HAYLF+G+RG GKTS+A++ Sbjct: 1 MSSKYIAWYRKYRPQTFNDVVGQELIVQSLKNIITSQQYFHAYLFAGSRGTGKTSLAKIF 60 Query: 59 AKGLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A LNC+ PC C +D+IEIDAAS V++ R+L++NV P Sbjct: 61 ANTLNCQHKRDLLIPCETCIA----NINNSLDIIEIDAASNNGVKEIRELIENVANLPQN 116 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 +KVY++DE HML+ +FNA LKTLEEPP+HV F+LATT+ K+P+TILSR +F+ Sbjct: 117 SPYKVYIMDEAHMLTTSAFNAFLKTLEEPPKHVIFILATTEVHKIPLTILSRLQRFNFVK 176 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + ++ + +LE +L +E I++E AL+++A+ +EGSLRDALS+ +Q G+G+++ V Sbjct: 177 VQIQDVIKRLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILEQVSTFGNGKLNLSDV 236 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G +++ + + ++ + + +A++ + +G + + L +L L+ + + Sbjct: 237 ETLFGLTSNEKIVEFINSLYAEDIKESLAILKQIFEQGKQTKLFLNSILNLIKNWLIYNI 296 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + IE+ + ++ I Q + ++L Y+ + +EM +++ + Sbjct: 297 AHSTDLLSNSDIEI-LDKI--KIDKAFAYKLQQIIFETIEKLIYSDNSNSFLEMMVIKII 353 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A E PV+ + + + Q Sbjct: 354 A-----KKEESRTVESYANPVSYLPSKIAENTIITNDKQEFDNQKIKINFQRPKDENPFQ 408 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + + P + + + + +A+ Q PS Sbjct: 409 S-QSWKSNISVQIPTPQQSDKPKISTLKKSQEIANF--DGQKEGYPSPETTIANNDSQSL 465 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + ++ + L + + E + D Sbjct: 466 IETIDEHFNEQVMENNLSYLAQEEQIEHNSSPILEQNLTNNALDSH 511 >UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Chlamydiaceae RepID=B0B7Q2_CHLT2 Length = 466 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 142/453 (31%), Positives = 219/453 (48%), Gaps = 13/453 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV +R++RP F++++GQ+ V++ L N L L R HAY+FSG RG GKT++AR+ AK Sbjct: 3 SYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKA 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PC C C+EI G +D+IEID AS +ED R + + V + P++ R+ Sbjct: 63 LNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FN+LLKTLEEPP HVKF LATT+ K+P TI SRC + LK + Sbjct: 123 KIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRISE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I +L I +E AL +A+AA+GSLRDA SL D + + + + Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKA 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +D L EA+ N E+ + +++A G+ L ++ L + Q S Sbjct: 243 LGILSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSK- 301 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +A + L + + A + +E ++R L + Sbjct: 302 -----------QFHSVATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIY 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 R + + AP + T +++ P +A Q Sbjct: 351 SRPTFSQLVSQIRQPAPTQIRPIPTASELESCPPQIKSSNTEETKSSPQPTAVAKLSQGS 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASV 453 + A+ K E P + ++ Sbjct: 411 LLTAASSQTKKETIHQETPPPSLDKISPSESAA 443 >UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteroidales RepID=C2MCK6_9PORP Length = 429 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 143/428 (33%), Positives = 223/428 (52%), Gaps = 10/428 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RPQTF +++GQE + L + + G+I HAYLF G RGVGKTS AR+L Sbjct: 1 MSDNFIVSARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTSAARIL 60 Query: 59 AKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NCE CGVC NC+ R ++ E+DAAS V+D R L ++V P + Sbjct: 61 ARTINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDVYIRPQQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++KVY+IDEVHMLS +FNA LKTLEEPP +V F+LATT+ K+ TILSRC + K Sbjct: 121 GKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQA 236 + EQI QL + + E + ++PR+ +AR A+G +RDALSL D+ + + DG +S + Sbjct: 181 IPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQDGVISYEQ 240 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 L LDD+ + + +R + L++E +G+ L++ + + + + + Sbjct: 241 TLQTLNILDDEYYFYFTTYLYSGDYKRTLLLLDELLGKGVAMRQLIIGLADFMRNLLVAR 300 Query: 297 LSPAALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R LA+ I P + L+ + + +R+ VE+T + Sbjct: 301 TPETMQLFPYTGVHAERFATLAQQIHPLFLYKSISKLVSCERNYRSSQAKRLLVELTFMG 360 Query: 356 AL----AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 AF P P + T P P + P+ + +P P + Sbjct: 361 ISEMCGAFKNATVAPPTAAPATPTPQESSVQAPQATYQAP-PAATPKPSTAMPTPSAATP 419 Query: 412 VLAARQQL 419 ++++ Sbjct: 420 TQDEKKRV 427 >UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Candidatus Phytoplasma australiense RepID=B1VAI4_PHYAS Length = 602 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 208/394 (52%), Gaps = 4/394 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VL RK+RPQTF DVVGQ+ ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 4 SYLVLYRKYRPQTFQDVVGQKFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKV 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + C C +C Q D++E+D AS V++ R++ D QY P G+ K Sbjct: 64 INCIYPQSGDVCNKCTSCLGSLQTNN-DIVELDGASYNGVDEIREIQDKAQYKPHIGKNK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH+L+ ++FNALLK LEEPP+HV F+L TT K+P TILSR F + L +E Sbjct: 123 VYIIDEVHVLTPNAFNALLKILEEPPKHVVFILITTQMHKIPETILSRAQSFSFENLSLE 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I QL+ I N E I A++ +A +EGS+R+ALSL DQ + + ++++ ++ + Sbjct: 183 NIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQISSYQNNLITSEDIAEIK 242 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + +L ++E N + + L+N+A G + L+ ++ L + QL Sbjct: 243 GVVSGSFLKNLFCCLIERNYNQALKLLNKAVDSGKNLDLLVANLINSLKNYFLEQLKQNE 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + + I Q L ++ L + ++ +E+ ++ F P Sbjct: 303 KEQNENLGKKNINNYELEL---QIDFILQIFLKLQQNLKKSSQKKDLLEIAFIQICYFSP 359 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + P A + T+V + + Sbjct: 360 SHQNLSISETEKILKPNATKIEIEKTKVISEKKP 393 >UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMU3_THEM4 Length = 460 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 198/385 (51%), Gaps = 25/385 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F ++VGQ HV N L I HAY+F+G RG GKT++AR+LAK LN Sbjct: 2 ETLYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC +C+ C I++G F+D++E+DAAS +++ R + + V Y A+G++KVY Sbjct: 62 CENPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K + + I Sbjct: 122 IIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +LE + E I A+ +++ A G LRDAL++ +Q I S + + V LG Sbjct: 182 IKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRETLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + D L+E + + + + LI+E G E L Q + Sbjct: 242 IPDTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFL------------YQTIEKLIS 289 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + + + K++ Y+ ++ V++ + A P Sbjct: 290 LVEENNHNYI-------------HFLKPISEILKDIKYSEEKITLVKLGFISLFATQPIY 336 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQ 388 P+ + Q+ + A + Sbjct: 337 IQPKNKEISQNDSKNAERKAEKIEE 361 >UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax=Tropheryma whipplei RepID=Q83FL2_TROWT Length = 522 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 120/359 (33%), Positives = 191/359 (53%), Gaps = 5/359 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L R++RP+ F+++VGQ+ V L++ L R+ HAYLFSG RG GKT+ AR+ A+ Sbjct: 4 SEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARC 63 Query: 62 LNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC G T++PCG C +C ++ +D+IEIDAAS V+D R L + +APA+ R Sbjct: 64 LNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRERAIFAPAQSR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 F+++++DE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + Sbjct: 124 FRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRTFSYPFALVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + I N+E I E L L+ RA GS+RD LS+ DQ + ++ ++ Sbjct: 184 ASVMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSILDQLMV--GKCITYESTVG 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM-VQLS 298 +L D L A+ E +G A I + G E + +++ + + + V + Sbjct: 242 LLRLAPDILLYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCNA 301 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + R+ L++ D+ + L L R+ +E+ L L Sbjct: 302 EGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRLLLEIMLASLL 360 >UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NU34_9BACE Length = 596 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 172/599 (28%), Positives = 255/599 (42%), Gaps = 50/599 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP++F DVVGQ H+ L ++ GR+ HAYLF+GTRG GKT+ A++LA+ + Sbjct: 2 YQALYRKWRPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C IE G +D++E+DAAS V+ R L D Y PA R +V Sbjct: 62 NCEHPVDGNPCNQCPSCLGIENGSILDVLELDAASNNGVDQVRALRDEAVYTPAAVRKRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS +FNALLK LEEPPEH+ F+LATT+ K+P TI SRC QF K + Sbjct: 122 YIVDEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILPGD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++ +E I LLAR A+G LRDALSL DQ + + G + V + LG Sbjct: 182 IARRLSYVAEQEGIGLTSEGAALLARLADGGLRDALSLLDQCV-NPSGTIGEAEVLSALG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-- 300 + + +L+E + + + + G + +LL E+ L + + + +P Sbjct: 241 LAGNLETAALMEQIAKRETAGALETLARLYGAGKDVGSLLNELSSLARDLLIRKTAPQSG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A E +R L R + P + L +L + +RR E+ L+R Sbjct: 301 AALLTGGYDETTLRRLDRLLAPARLAQILSQLQATSADLSRSGNRRTDAELCLIRLC--- 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 E P + T + P + AP +Q + Sbjct: 358 -----DETLDPSPAGLNARLTRLEEQLAGGGIPTQPVRGAPVQQTAAPAAQQQPKQAAPA 412 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R + ++ P N E A+ R + AP + Sbjct: 413 RSEDRPPWEEERPPLPEEPGERINQVAEEEAARPAVQPQRTAEPVRQGAPQQ-------- 464 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS--LPKLVEQ 538 PV A P D W V+ L +P Sbjct: 465 QAPVQNAPAAQAFPAG------------------------DFWPELVASLKGRIPMGEYT 500 Query: 539 VALNAWKEE---SDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 N + + + L+ S +N G +A+A S G + +T+ Sbjct: 501 FLANPAMVQGRAENGMLTLYTDSDFTRTMINKPGILSVVAQAASARLGGQMRVTVTVGQ 559 >UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHM0_KOSOT Length = 503 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 130/405 (32%), Positives = 210/405 (51%), Gaps = 33/405 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ +VL RK+RP+ F ++VGQ+ V L + I HAY+F G RG GKT+ AR+LAK Sbjct: 4 MA-EVLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C++C ++ +D+IEIDAAS +++ R + D Y P G + Sbjct: 63 ALNCLSH-DDKPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DE HML+R +FNALLKTLEEPPEH+ F+LATT+ +K+P TILSRC F K L Sbjct: 122 KVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSE 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L+ IL EE + AL+++A+AA+G +RDA++L ++A+ G ++ V + Sbjct: 182 GQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFG-EKIEEDNVKNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L ++ S + A++ + + ++AL G ++++ + + L + + Sbjct: 241 LGILPEEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQSIELTKD-MISR---- 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R + + L +E+ Y+ ++++ E+ Sbjct: 296 -----------------RELEFERGVKLIEKLWEVNREMRYSENKKLTFEVL-------- 330 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 L VP S P + +V + + T + Sbjct: 331 SLTTLAAMNVPSVSVEPAKAVNAVVKEEVKKSNEEKEVEPITTDI 375 >UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NVX1_9BIFI Length = 935 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 161/651 (24%), Positives = 266/651 (40%), Gaps = 40/651 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF VVGQ+ V L L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 5 MA-LALYRRYRPDTFEGVVGQDQVTVPLMRALDANKLTHAYLFSGPRGCGKTSSARILAR 63 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS VED R+L D +APAR Sbjct: 64 CINCAQGPTSHPCGECESCKDLANGGPGSIDVVEIDAASHNGVEDARELRDRAGFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P+++ TI SR + + + Sbjct: 124 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPERVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 E + LE I +EHI EP L+L RA GS+RD LS+ DQ + + DG+++ + Sbjct: 184 PQEIMGPYLEQICEQEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVDGEMTYDSA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D V+A++ +G + +I + G + + ++L + ++ L Sbjct: 244 VALLGFTPDVLISEAVDAVINRDGAALYGVIQKVIVGGFDARRFVEDLLAYARDLLVLTL 303 Query: 298 SPAALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + ++ + A+ + I +T+ ++ A RM Sbjct: 304 AGDKAESVLSDDAAENREDLHRQAQALGLPAITAMAETINQALVQMVGAVSPRMR----- 358 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L + EP + A A + P P A + + Sbjct: 359 -LELLAARLLATREPGALQSGAAMREGDADVETHHKAPAPHGGFIGAGRKEMQPAATTAQ 417 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE-----K 468 A Q + PAA ++ + AA A + A +A Sbjct: 418 TASATTQSASAPAQTPSGSPAATSQRQASQAAAAPADAYASAATHAAAADAAATDAWGVA 477 Query: 469 APAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS 528 P + + + + + + A + W A V+ Sbjct: 478 MPVMPATSAAASPSSPSSPAASADGSASAHASGTAADASQASTSAAMSGTPDERWDALVA 537 Query: 529 QLS----------------LPKLVEQVALNAWKEESD--NAVCLHLRSSQRHLNNRGAQQ 570 L L A W + + + + Q Sbjct: 538 SLPEQIRMYVDRTHVPRINLAADPRTGAQRLWIKFDTPLSKYAFAFAVANESIGGSNRVQ 597 Query: 571 KLAEA-LSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + A + + G V L + P + +E+ + I+ Sbjct: 598 DIVRAKVHEVFGDQVSLAPTQKMANGEVAPPVS--RLTDEQRKTIKAQIMQ 646 >UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VPV6_9PROT Length = 607 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 183/650 (28%), Positives = 283/650 (43%), Gaps = 76/650 (11%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ+F D++G E ++ L N + RI HA++ +G RGVGKT+ AR++A+ L Sbjct: 14 YRVLARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARAL 73 Query: 63 NCETGITATPCG----VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N ET P +CR I + R D+ E+DAASRT V D R+L++ V+YAP G Sbjct: 74 NYETETIDRPTVDMPVEGRHCRAIAESRHPDVYEMDAASRTGVGDIRELIEGVRYAPIEG 133 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 134 RYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRF 193 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 D+ + L I +E A AL ++A+AAEGS+RDALSL DQA+ G+ + + Sbjct: 194 DITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQALVQKAGEAIGAADI 253 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI---AM 294 MLG +D Q L+ A + + + + L E G + ++ ++L L H + + Sbjct: 254 RDMLGLVDRTQTWDLLGAAMAGDAKTALRLFREQYDGGADAGQVMRDLLSLTHLLTRTLV 313 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 AA G A R + +A +P + + L+ +E+ APD E+ L+ Sbjct: 314 AGDEAAAHGQAGEADTERAQAMAHGVPLPALTRSWSLLMKALEEVQNAPDAAAAAEIGLI 373 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R +A+ P PE + A A Sbjct: 374 R-VAYAAGQPTPEEALKALGQAAPQAAAQAA----------------------------P 404 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 Q A +A S A T A + + AP + Sbjct: 405 QAAPQAAPQAAPQAAPSAERAPTGAATGPQGSWSPTGGQVAVAVNAAPDAGPHTAPDPAQ 464 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P++ +P +T + A LA + + L Sbjct: 465 PSPERPARPMLTAPSPAPSPT--------IETLDDIAALAGVKRDARLREEIETCLIP-- 514 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + + +L +AL G ++I D Sbjct: 515 ----------VHLETGRLDVAVTEAAPKDLTG----RLGQALKAWTGRPWIVSI-VADPG 559 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRPI 643 V T + ++I A+ + F A + ++RP+ Sbjct: 560 EVPT-----------IRGRRNQAIKANPVVNAALSAFPKARI--AAVRPL 596 >UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQQ3_9BACT Length = 554 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 142/549 (25%), Positives = 235/549 (42%), Gaps = 24/549 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQTF DV GQ + + +S G + HAYLFSG RG GKT++ARL AK + Sbjct: 2 YLSLYRRYRPQTFQDVTGQNTAVEVVRRAVSRGNVGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G PC VCD+CR I +G +D++EID AS +V++ RDL +V A +K Sbjct: 62 NCSDRGKGGEPCNVCDSCRSISEGNSLDVVEIDGASNNRVDEIRDLKTHVGLASFSSPYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY++DEVHMLS +FNALLKTLEEPPE V F+LATT+P K+PVTI SRC ++ +E Sbjct: 122 VYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSRCQHIPFHSIGLE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +L ++ E + + +L +AR A+G LRD LSL +QA+A D V V ++ Sbjct: 182 DMVSRLRYVTELEKVKCDDDSLWEIARQADGGLRDGLSLLEQAMAVQDDGVDLSVVERLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + ++ E + + RG E +L + + + + Sbjct: 242 GGGSHGELCRWLDGFHERGEMGTLKDLEGMFLRGASVERVLDGLYVIFRNLWIASRWGEK 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + + + + + + + R Sbjct: 302 GIDALGLSPWESRFLTRTVGRWNEPFLRDMMELTSSLMPQGRRGLRQDVLIGILMTRL-- 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT-SQVLAARQ 417 VP ++ + + V P + P + AP P + Sbjct: 360 -----------VPSETPSSIKSPTVEPPNEEPVSAKPAPVSVPASDGEDPPLWSRFGDIP 408 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR--VQARPVPSALEKAP----A 471 + +S+ P E L+ + +Q+ E Sbjct: 409 HIVSALAFCAISRSDDEMEVVVSPERVFCFELLSGERNAYIMQSVLNEDGWEGRVVFRCG 468 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 +E + P Q+ + + ++ ++ K+ +++ E + D + Q+ Sbjct: 469 DRERVYEPLSAPSSQELPLEVDREDQRETVKEVKSTDVSKTEDIEVPDGDDGLLRALQVV 528 Query: 532 LPKLVEQVA 540 + +V Sbjct: 529 RSQTSGEVL 537 >UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 Tax=Treponema pallidum RepID=B2S4P2_TREPS Length = 572 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 130/404 (32%), Positives = 202/404 (50%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQV A ++RPQ F V+GQ+ V+ L L ++ AYLFSG G GKTS AR+LAK Sbjct: 1 MAYQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C +CREI G +++IEID AS T V D R + + + + P R+ Sbjct: 61 ALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ ++P T+ SRC QFH + +D Sbjct: 121 KVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L + IA E L +AR + GS+RDA +L DQ + S G V+ + + Sbjct: 181 QTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + DD +L + + L++ + G+ E +++ + + + Sbjct: 241 LGLMTDDSLAALFSHCCRKDARAALELVDALVSSGVSVEQCVIDCVRYARALLLFTQGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + T + I+ LL +++ ++ D R +E+ + R Sbjct: 301 NESLVGIAANQVPEYVRTTWNASQIERALGLLLQLFRDIRFSVDPRYELELAISRLAWLS 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 + + E V S + T + + P Sbjct: 361 EYVSIQEVRVALDSVQQILDTHAVPGVCSASVGSDDGETGVVSP 404 >UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=Wolbachia RepID=C0R4F2_WOLWR Length = 533 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 135/421 (32%), Positives = 225/421 (53%), Gaps = 6/421 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 +A K RP +F D+VGQ+ ++ L N L +I + L SG+ GVGKT+ AR++A LNC Sbjct: 3 IALKHRPSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCS 62 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 G PCG C+NC I+ D+IEIDAAS T ++D + +L ++ Y+P +FKVY+I Sbjct: 63 LGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKVYII 122 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS +FNALLKTLEEPP VKF+LATT+ +K+P+TI++RC +F L + V +I Sbjct: 123 DEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQRFDLHNIPVAKIVE 182 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLGTL 244 +L + +E + E AL+L+AR + S+R+AL L +QA+ DG +ST+ V+ +LG + Sbjct: 183 RLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYSKDGAISTKNVTDILGLV 242 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D D L+ A++E + ++ +++ ++A ++ +L + + ++ Sbjct: 243 DKDIIFDLLGAILEGDLQKALSVFDKAVKT-ANPLSIFEGLLQTIQLVCRFLITKEIDNA 301 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + R+++L+ ++ LL G +++ + + EM L+ +P Sbjct: 302 VTEHEKNRIKDLSIKRSLIFFSRLWKMLLKGIQDIKTSTCNDVAAEMMLISLCYL-SDLP 360 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 PE + + V P P + Q P+ + + V+ Sbjct: 361 SPEQVIKKVLSQNVEQGNRQ---GRPVAPSPSVIQVADYSDPKKYVESKQQPHSVIPVRD 417 Query: 425 A 425 Sbjct: 418 T 418 >UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bifidobacterium RepID=B3DUB5_BIFLD Length = 960 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 158/632 (25%), Positives = 265/632 (41%), Gaps = 38/632 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A+++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L + + +PP S+ + Sbjct: 355 --------RLELLAARLLAGSESGFATAAPAPASSGMPPAAASSTSTTSAASGTGASGFA 406 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A+R + + A + + A A A Sbjct: 407 GASRGGFAGASHGGFSGAARNQQAAAPQSTASHESVGGNGPVSDRPADSPSVQPAVATAA 466 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 A + VA+P A EK A L E I +V + Sbjct: 467 AGAGWGAPAASPAVPAQPVASPAASDNRSIDEKWDAAVAALP-ETIREYVSRDKVPTVKF 525 Query: 533 PKLVEQVALNAW---KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------S 582 + + + K S +A L + +S + A + +A+ G S Sbjct: 526 GPNRKGLPCLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPS 580 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 V ++ +P + + + +A+A Sbjct: 581 AVAANGERVESVKRMSPEQLAKVKQQIAMAKA 612 >UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QBX8_SULNB Length = 666 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 158/548 (28%), Positives = 258/548 (47%), Gaps = 36/548 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP TF D++GQ+ V L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MS-LALARKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T+ PCG C +C + R +D+IE+DAAS ++D +DL+++ +Y P+ R+ Sbjct: 60 ALLCEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIEHTKYKPSSARY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP+ VKF+LATTDP KLP TILSR F K + Sbjct: 120 KIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIPQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LEHI+N E I +E AL+++AR+ GSLRD+L+L DQAI V V+ M Sbjct: 180 NLVLSHLEHIMNLEKIEYEKEALEIIARSGAGSLRDSLTLLDQAIVYSKNFVDVGTVTGM 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ +L+ +V+ + +++ I A E E +L Sbjct: 240 LGIIEPSLLEALLGNIVKKDTTKILEFIK--LASDYEAEMILD----------------- 280 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + + + P I+ +++ + + L D + + L + + Sbjct: 281 ---ELTLYLKELLLTGSGKLNPMIIERFFRVIAESKSLLALGSDGEFVLSLALFKMMEAL 337 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + ++ S + VP T S+V+ ++ Sbjct: 338 EIKDIDTMIRGLEK-------------ELKGVEVSEIMVSTPVPDLSTPSEVITITEEDI 384 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T++ + +A + + T + Q RP + AP + Sbjct: 385 LTPSQTESVQRSAFSAEKEEETTEPLPKTSPENTIKEQNRPEETVGRGAPTPTMKPDKQT 444 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + ++E + + +A + ++ ++ A + A + +L Sbjct: 445 VSEETTEQEQKSPETPVTEAPKAKEETQITAAPSLNAQRSTLNTDKFKELVSKIYDRNYE 504 Query: 541 LNAWKEES 548 L + E + Sbjct: 505 LGSCFERN 512 >UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y4_9BACT Length = 640 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 168/630 (26%), Positives = 263/630 (41%), Gaps = 53/630 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQ F+DVVGQ + + + G I HAYLFSG RG GKT++ARL AK + Sbjct: 2 YISLYRRYRPQKFSDVVGQSAAIGVITRAIESGAIGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + A PC C+ CR I +G +D+IEID AS V++ R+L ++V A +KV Sbjct: 62 NCPSKTGAEPCNECETCRAIREGSCLDVIEIDGASNNSVDEIRNLKEHVALASFTCPYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT P K+PVTI SRC + +EQ Sbjct: 122 YIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQHIPFHGMTLEQ 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++L+ + E I AL +AR +EG +RDALSL +QAIA G G V+ + V +LG Sbjct: 182 IVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQAIALGAGSVTRETVDKLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + E + ++ G E E L + + + + + + Sbjct: 242 GGSSSSIRQWLSGSHAT-PENSLPILEGLFRSGAEPERFLSVLFACVRNLWLQKRWGEKI 300 Query: 303 GNDMAAIELRMRELART---IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL---LRA 356 +A E + LA+ + ++ + ++ + + + L++ Sbjct: 301 LRALALSEEERQWLAQEKDFLSLPHLEELMARIASLLPQVRRGLSIDVLCGLLVSWTLKS 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-LPETTSQVLAA 415 +P E + V+P + + AP AP LPE+ Sbjct: 361 AVSEVSLPDVETAASATN---VSPEGRAARIRSGARDTGAPASAPVRSRLPESAPSAAQK 417 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + + + + + + E + S+ Sbjct: 418 AQTAPETEMPPREQAARAESGASPSAAEVPSAETVGSLAPLHSDVK-------------- 463 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 A + ++ VA P L + + EL L + ++ ++ + K Sbjct: 464 ---DALLSALGKQPNVAVPLCLADIVYDRERQELGILLNEDDVQA---YETLNSERMAKA 517 Query: 536 VEQVALNAWKEESDNAVCLHLRS---SQRHLNNRGAQQK--LAEALSMLKGSTVELTIVE 590 + V + ++ L S HL+ A + L AL+ Sbjct: 518 AQSVLH--LNDLEIQSIKLQCGSRVERFDHLDAERAPENTPLQLALAE------------ 563 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 D P +P E A E + Sbjct: 564 -DQPGKDSPYAGFLRRDAEA--AAPERLEK 590 >UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7N2_MYCHP Length = 667 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 142/543 (26%), Positives = 256/543 (47%), Gaps = 24/543 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP+ F D+ GQ+H++ L N + ++ HAYLF G G GKTS A++ A + Sbjct: 7 YLALYRKYRPKIFDDIKGQDHIVITLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTI 66 Query: 63 NCETGITA--TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + PC C + ++ R +D+IEIDAAS T ++D R+L + +++ P + ++ Sbjct: 67 NCLHNQSDILKPCEECI--KNVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNALLKT+E+PP H+ F+LATTDPQK+P TILSR +F+ K + + Sbjct: 123 KIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 E + QL+ I N+E+I +E A+ ++A+ GSLRD+LS+ D + + + V Sbjct: 183 ETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G ++ D + L+ M + + + L E ++GI+ L+ +++ +L + + Sbjct: 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTR 302 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++ ++ I Y +TL+ + + E+ LL+ F Sbjct: 303 DQSL-VSTDFKILLQI---KIDDVKAHYYIETLIDQLHSIAISDSPEDYFEILLLKLCNF 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ ++ A + + Q + A + + +S Sbjct: 359 LS------PKEEYKNSAVMPKISNEEFNNFNSQEKQAINKNNIYKSLDLSSIANGFNANN 412 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 +Q ++ +E A N+ ++ L T + + S E A + Sbjct: 413 STIQNSSDNNSTEDLAN------NSKKIDDLLEKTAEIYSLDQTSEFEVADISNQIISNN 466 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + T + + + +L +K +E P + L + + ++ Sbjct: 467 QISIDSNVDNQETTDLQISENWKDLVNEDLISKENSENKHV-PLETIIDCLLIKQYLKNN 525 Query: 540 ALN 542 LN Sbjct: 526 MLN 528 >UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonproteobacteria RepID=Q30Q97_SULDN Length = 543 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 144/412 (34%), Positives = 213/412 (51%), Gaps = 25/412 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQE + L+ L R+ HAYLFSG RG GKTS AR+ +K Sbjct: 4 SSEVLARKYRPINFDELIGQESISQTLSLALDANRLSHAYLFSGLRGSGKTSTARIFSKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE GI+ PCGVC NC + R +D++E+D AS K++D RDL++ +Y PA RFK Sbjct: 64 LICEKGISHKPCGVCQNCILALENRHIDIVEMDGASSRKIDDIRDLIEQTKYKPATARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKSIATN 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL ++AR+ GSLRD L+L DQAI V + V+ ML Sbjct: 184 KIADHLSHILNLEGIKYESEALDIIARSGSGSLRDTLTLLDQAIIYSKNYVDVRTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D L A+ + +++ + E + +L E++ L Sbjct: 244 GLVDPKFLQELFNAVFAKDYAKLIQHVKSLED--YEAQMVLDELIAFLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYASDALYSTLVLDRFFRILSDAKYLFSINADGSFVLSLIFFKMVE--- 338 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + E + +S ++ + P + Q +P + V Sbjct: 339 ALRIKEVDQMIESLQKEIYRPAISCSPTENLPLNTTVQNIVKSVPNLSQSVE 390 >UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3S6_9BACT Length = 615 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 171/644 (26%), Positives = 277/644 (43%), Gaps = 39/644 (6%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARKWRPQ F DVVGQ+HV+ L N + R HAYLF G RGVGKT++AR+ A Sbjct: 1 MSEYQVIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAYLFVGPRGVGKTTLARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NC PC C++CR I + R +D++E+DAASR D R+L ++V P GR Sbjct: 61 KAMNCLDPQDGEPCCRCESCRAIAEERSLDVMEVDAASRNTTGDMRELAEDVLTQPVGGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ ++N LLKT+EEPP HVKF+ ATT+ ++ TI+SRC +F L + Sbjct: 121 YKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISRCQRFDLLPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQ 235 I +L I + E + A+ +ARAAEG +RDA SL DQ IA D ++ + Sbjct: 181 TRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFSQGDDTPITGE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V ++ G D +L+ AM+ V+++++ A +G E L ++L + + + Sbjct: 241 QVLSLFGLTDRTDLDALMVAMLRNAPGEVVSIVSRLARKGKNLETLFDDLLEAMRAVQLC 300 Query: 296 QLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P L ++ R R+LA P IQ+ + + + L A ++++ +E L Sbjct: 301 AILPDPSDLIDEGEEAVARYRKLAALAKPDTIQILLEIIAPVGRVLHDALNKQVYLETIL 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L+++ + + + + + A + P P PE + Sbjct: 361 LKSMREAHAVRIDDLLARLNQLRTAGELKFIDQLPPVVKRTEAAEIEPLKPQPEAPAPAP 420 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + + A P A + + A+V P A E A Sbjct: 421 APAARATPPPAPQEPAPEPAATEVAPPPAAPAPMPQPAAVESAPAPVPPEPAPEPQAAPM 480 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P + ++ A + + + E V + +P Sbjct: 481 PVTAEPVPAPQLPEQAPAAPEPESEPVEPIRPLSAPSPEPPEEEPASPA-PPAVERQPVP 539 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + E+ + + LA + Sbjct: 540 EPAEEPEAEPEPAPPNQ-----------------MPEVLAA--------------QVTEE 568 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P ++ +A E + D I + F + + Sbjct: 569 SDLDAPGRKKRHSIANDNPKALEEAVNDPFIHEVVDLFGGSVVD 612 >UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKU4_9PROT Length = 585 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 216/431 (50%), Gaps = 22/431 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQ+ + L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 4 SSEVLARKYRPSNFDELIGQDTIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE G++ PCGVC NC+ + R +D++E+DAAS K++D RDL++ +Y PA RFK Sbjct: 64 LICEQGMSHEPCGVCQNCKLAVENRHMDIVEMDAASSRKIDDIRDLIEQTKYRPASARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ + Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILSRTQHFRFKSIATK 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL++LAR+ GSLRD L+L DQAI V V+ ML Sbjct: 184 KIIDHLAHILNLEEIKYETDALEILARSGNGSLRDTLTLLDQAIIYSKNHVDVNTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D + L A+ + ++ E E ++ E++ L Sbjct: 244 GLVDPKFIMDLFSAVFAKDYASLVQYTKILED--YEAEMVVDELIAYLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYNQDALFSTLVLDRFFRILSDSKSLFSINADGSFVLSLIFFKMVEALR 341 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + Q + + + A + V E+ + ++ Sbjct: 342 IKEVDQMIESLQKEIKRPEISSINIEPLKRVQVEAVEPQDQVASTESIQEYYQEEDEMLH 401 Query: 422 VQGATKAKKSE 432 + + E Sbjct: 402 QETHIPEPQPE 412 >UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L148_THERP Length = 562 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 152/420 (36%), Positives = 212/420 (50%), Gaps = 12/420 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M L RK+RPQTF ++VGQE + L N ++L R+ HAYLF G RG GKTS ARLLAK Sbjct: 1 MQSGSLYRKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAK 60 Query: 61 GLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C CR I G VD+IEIDAAS V+D RDL + V+YAP R Sbjct: 61 AVNCRDADPWRRPCNQCGACRSIATGTAVDIIEIDAASNRGVDDIRDLREKVKYAPVELR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K Y+IDE H L+R +FNA LKTLEEPP HV F+LATT+P KLP T+ SRC +F + L Sbjct: 121 TKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQRFDFRRLP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-----VST 234 V+++ +L + E I L L+AR A GSLRDAL L ++ ++ Sbjct: 181 VDRMVERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLAVFASDGENEPVITL 240 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +LG DD+ L LV A+ + + R + L+ EAA G + L E++ + Sbjct: 241 ELARQVLGGSRDDRLLDLVTAIADRDAGRALRLVAEAADAGDDLHQLGRELVRFTRTLLY 300 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA-PDRRMGVEMTL 353 V+ + A LA+ ++ L + L LP + D ++ +E+ L Sbjct: 301 VRAGGSDPLLPPEAS-----ALAQRFSLEELALVLRRLTGLDAPLPRSGIDPQLLLELGL 355 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + ++ P + A A TA + P A + P T+ Sbjct: 356 VESILLLDGSQRERTLAPSGATAVPAMTATPPRVVPAAPRPAPPPAASSQPAVSPTTSPA 415 >UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQ39_HIRBI Length = 619 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 165/465 (35%), Positives = 231/465 (49%), Gaps = 10/465 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP TF D+VGQE ++ L N GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 36 AYQVLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRIAHAFMLTGVRGVGKTTTARLLARA 95 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN P +C+ I + R D++E+DAASRT V D R+LLD V+Y+P Sbjct: 96 LNYSRDGVEEPSVQLSPVGRHCQAIMESRHPDVLELDAASRTGVADMRELLDGVRYSPVN 155 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F+L Sbjct: 156 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFNLAR 215 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQA 236 L + + L I +E L L++RAAEGS RDALS+ DQAI G +VS A Sbjct: 216 LTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVLDQAIVQSTGDEVSVDA 275 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L++A + + + N G E + L+ ++L + IA Q Sbjct: 276 VRDMLGLADRARVFDLLDAAIAGEHKVALEETNAQLQEGAEAQILMKDLLDAMAEIARAQ 335 Query: 297 LSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R ++LA +I Y++ LL G ++ APD + EM + Sbjct: 336 AMGESYVFAGPVEWTQRTKKLASSISNAQSARYWKLLLQGYEDCARAPDPNVAAEMA-VL 394 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LA +P PE P + P + Sbjct: 395 RLAAAAALPSPEDAARMLQNGPSGNNPNGGGPSGG---GAYSNGDPGPGAQSYQANGGGG 451 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQAR 460 + Q + A PV + + A++ Q Sbjct: 452 ARAQSGAQSVVARAVPDKYAEAAPGPVLGSLNQICAALQGDKQIH 496 >UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 Tax=Rickettsiales RepID=Q2GI84_EHRCR Length = 505 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 209/386 (54%), Gaps = 3/386 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S A K+RP F D++GQE ++ L N L +I + L +G GVGKT+ AR+++ Sbjct: 12 STMSFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMC 71 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC +G T+ PC C NC I+ D+IEIDAAS T +ED + +L+N +Y P +FK Sbjct: 72 LNCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFK 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLK LEEP +VKF+LATT+ +K+PVTI+SRC +F + + + Sbjct: 132 VYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTD 191 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++ L+ + +E+++ + +++L+A A+GS+R+ALSL +QA + +S ML Sbjct: 192 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEML 251 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + L ++E ++ N + EA +L ML +++ I ++ Sbjct: 252 GYVSRHTLLEIIEPLIIGNATEALNKFEEACNS-YNSVIILDNMLQIIYEICYFSITKKD 310 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +I ++ + + PT + +Q L G +E+ + + M ++R Sbjct: 311 NSTSDNSIITYIKNE-KILSPTFLSRLWQMLFKGIQEVKSSSCIKQAANMLIIRLCYL-S 368 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPT 387 +P P+ + + + + Sbjct: 369 SLPSPKQIIDKIQGKINNTSDINRKA 394 >UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D230_WIGBR Length = 365 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 153/363 (42%), Positives = 236/363 (65%), Gaps = 1/363 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L KWRP+ F D++GQ+HVL L N +I+++YL SG RG+GKT++ARL+AK Sbjct: 1 MNYKPLNIKWRPKIFNDIIGQDHVLRFLKNSFLDKKIYYSYLISGIRGIGKTTLARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC I PC +C NC E E+ FVDLIEIDAAS TK+E+ +++LDN++Y P++GR+ Sbjct: 61 SLNCFYDINFNPCRICKNCEESEKNCFVDLIEIDAASHTKIENIKEVLDNIKYLPSKGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS++SFNALLK LEEPP HVKF+LATT+ K+P TILSRCL LK + Sbjct: 121 KIYIIDEVHMLSKYSFNALLKILEEPPNHVKFILATTELNKIPETILSRCLHLQLKEISE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I + L+ IL E I +E AL++++++++ S+RDAL+L ++A G+ + VS M Sbjct: 181 TDILYNLKKILKLEKIYYEEEALKIISKSSQHSMRDALTLAEKASILGENNILYNVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E + E+++ + + I W+ L+ M+ ++H++ + + Sbjct: 241 LGCISFMELIDLFEIISLNKKEKLIFFFKKIENKSINWDDFLINMILIVHKVLFFKFNDT 300 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + +L++ I D+ YY L GRKEL Y+ ++++ VE+T+LRA F Sbjct: 301 YKDPKKINTKKTKFYKLSKLISTNDLYKYYDIFLQGRKELSYSTEQKITVEITILRAFYF 360 Query: 360 HPR 362 Sbjct: 361 INE 363 >UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUB2_GARVA Length = 771 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 140/485 (28%), Positives = 236/485 (48%), Gaps = 17/485 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ V L L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC+ G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCKEGPTSKPCGKCQSCKDLATGGSGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 237 E + L+ I +E I + L+L RA GS+RD LS+ DQ I S DG +S + Sbjct: 180 PPEVMGPYLQDICKKEGIQAQKGVLRLAMRAGGGSMRDTLSVLDQLMIGSDDGVISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 A+LG + +++A++E +G ++ ++ + G + + ++LG L + ++ Sbjct: 240 VALLGFTPSNLIADVIDALIEKDGAKLYEVVQKVVVGGFDTRKFVEDLLGRLRDLLLLVS 299 Query: 296 ---QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + LG+ ++ + + + + + + A RM +E+ Sbjct: 300 AGPNCAKNLLGDLSPEDMQDLQRQSSQLTLRSLSKMAEIVNNAFAGMANAVSPRMNLEIL 359 Query: 353 LLRALAF--------HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 + R LA P + + S P + + + V Sbjct: 360 MARLLADMQSGTTAQEPFSKATNQSLAKSSSHPASSARHFIGSNSAVNSVNPVNPVNPVK 419 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + E S +L + ++ A + + T+ V+ + ++ D V+ Sbjct: 420 IAEAPSVILDDKSEINNNTQANWSTATVEKQTTQELDVDETWDNLVKNLPDDVREYVERD 479 Query: 465 ALEKA 469 + K Sbjct: 480 RVPKV 484 >UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R066_PHYMT Length = 580 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 198/360 (55%), Gaps = 11/360 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY RK+RP+ F +VVGQ+ ++ L N + ++ H YLFSG +G GKT++A++ +K Sbjct: 1 MSYIAFYRKYRPKFFKNVVGQKIIIQTLRNAIIYKKLSHCYLFSGNKGTGKTTLAKIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC CG C+ C I++ D+IEID AS VE+ RDL + + Y ++ Sbjct: 61 TINCLNNKDGDCCGYCEACNIIDKQNS-DIIEIDGASYNGVEEIRDLKNKINYKTNFLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVH+L+ ++FNALLKTLEEPP+HV F+ ATT+ K+P TILSR FHL + Sbjct: 120 KIYIIDEVHVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETILSRTQHFHLLNIQK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L I++ E I+ + AL+ +A ++GSLRDAL+L DQ + ++ V + Sbjct: 180 QHIIEKLTEIVDLEKISIDKEALEKIAFYSQGSLRDALNLLDQISSYETDLITVTCVQEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +++ + L++ + +++L+++ G L +++ +L + Sbjct: 240 KGAVEESNLIKLLQYTFNKDLNSIISLLDKINNEGKNILILFNDLIIILKNCLL------ 293 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ +TL+ ++ L + + +E+ ++ L+ Sbjct: 294 --EELLSPHDKKIK--LENFSLELANYVLKTLIDYQQNLKNSDLKESFLEIIFIQMLSSK 349 >UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C591_HYPNA Length = 578 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 168/410 (40%), Positives = 228/410 (55%), Gaps = 20/410 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP+ F D++GQE ++ L+N GRI H ++ +G RGVGKT+ ARLLA+G Sbjct: 28 TYEVLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARG 87 Query: 62 LNCET--------------GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 107 LN E I P G ++C I R D++E+DAASRT V D RDL Sbjct: 88 LNYEPKADAKGKKGKAAGPSIHLDPPG--EHCDAIMASRHPDVLELDAASRTGVADMRDL 145 Query: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 LD+ +Y P R+KVY+IDEVHMLS SFNALLKTLEEPP H+KF+ ATT+ +K+PVT+L Sbjct: 146 LDSARYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVL 205 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-- 225 SRC +F LK LD ++ L ++ E AL L+ARAAEGS+RD LSL DQ I Sbjct: 206 SRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQ 265 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + +VS AV AMLG D + L VE V + + +A + E A G + +L ++ Sbjct: 266 TTDGEEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDI 325 Query: 286 LGLLHRIAMVQLSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 L + I++ Q + R R LA+ + P +Q LL G +L APD Sbjct: 326 LDIAADISVAQATGDDWTQAGPADWANRTRALAQRLTPAQAARNWQLLLSGYGDLQVAPD 385 Query: 345 RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 + M +LR A +P PE + P P + PPQ Sbjct: 386 PATALNMVILRLAA-ASTLPSPEEAARMIAEGSRPPGKDNPPLKAPPQAP 434 >UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 Tax=Fusobacteriaceae RepID=D1AJH2_SEBTE Length = 496 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 203/402 (50%), Gaps = 24/402 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQ H++ A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFEEIAGQGHIVKAIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAK 59 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G+NC GI+ PCG CDNCREI G +D++EIDAAS +++ R+L + + Y P G Sbjct: 60 GVNCLTNGISDHPCGTCDNCREIAAGISMDMVEIDAASNRGIDEIRELKEKINYQPVNGN 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ L+ Sbjct: 120 KKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEVDKIPDTVISRCQRYDFLPLN 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVS 238 + I L+ + +E+I + +L+L+ R +EGS RD+ S+ +Q + ++ + Sbjct: 180 MNDIIEMLKMVAEKENIKIDEESLKLIYRKSEGSARDSFSIFEQVASNFSGEEIDIEKTQ 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LG + D + + + + +++ GI E L + L Sbjct: 240 TALGVIPDKLLNEFLTVVSNGDKIGGIDFVDKLWEDGILIENFLKDFSYFLKENL----- 294 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + +I + E Y D+R+ + + Sbjct: 295 ----------------KREDSIGIDRTLSLISVIYFVLGEFRYEEDKRLLGYVLINEIFK 338 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + E ++ + P ++AP + Sbjct: 339 QEAPVVITEVRQEYKAAESAPKSTQEIPAGNTQIQETAPSPS 380 >UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=Rickettsieae RepID=A5CF91_ORITB Length = 559 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 131/412 (31%), Positives = 217/412 (52%), Gaps = 14/412 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP+T +++GQE + L + G + AYL SG RGVGKT+ AR++A Sbjct: 7 NYVVWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAARIIATT 66 Query: 62 LNCETGI----TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +NC + T C C++C +E D+ EIDAASRT V+D R ++D+ +Y P Sbjct: 67 INCLQPVVTSKTIFACTKCNSCIAMENNSHPDINEIDAASRTGVDDVRTIIDDSEYKPLI 126 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++K+++IDEVHMLS+ +FNALLK LEEPP H F+ ATT+ K+P+T++SRC +F L+ Sbjct: 127 SKYKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQKFDLRR 186 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG------- 230 LD+ I L +I+ +E+++ L+ +A A+GS RDA+SL +QA A Sbjct: 187 LDINNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAVSLLEQARALAQNIADTASS 246 Query: 231 ---QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +S V M G L + L+ A+ E N E+ + ++ + G ++ +L Sbjct: 247 DVVVISLNTVEQMCGVLCLGKLTDLLSAIAEQNAEKGINIVTDLYISGTDFIVCSQNILD 306 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 L+ + V+ + A+ + L+ + + + + +Q +EL + + R+ Sbjct: 307 LIGYLIKVKTIDGYTESIYASHNNILNSLSMKLSLSRLTVLWQIFSKSIQELKISHNTRL 366 Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 E+ +++A+ + Q+ A T V P P+S P Sbjct: 367 CFEVVVIKAIYSFSLPTPIDALRQLQNELTDAKTNVDNAANSPAVPESLPAS 418 >UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERI6_ARCB4 Length = 643 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 158/603 (26%), Positives = 264/603 (43%), Gaps = 48/603 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VLA K+RP+ F D++GQ + L+ L R+ HAYLFSG RG GKTS AR++AK L Sbjct: 9 RVLALKYRPKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALL 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T+ PC +CDNC+ + +D+IE+DAAS ++D +DL+++ +Y P+ RFKV+ Sbjct: 69 CSQGPTSKPCDICDNCKSANASKHLDIIEMDAASNRGIDDIKDLIEHTKYKPSSARFKVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLKTLEEPP VKF+LATTDP KLP TILSR F + + Sbjct: 129 IIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRFNKIAQSDV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 H L +ILN+E+I E AL++LAR+ +GSLRD L+L DQAI G+V+T +V MLG Sbjct: 189 VHHLSYILNKENIDFEQNALEILARSGQGSLRDTLTLLDQAIIFSKGKVNTTSVVDMLGL 248 Query: 244 LDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D ++ ++ + +++ + E + EM L + + + L Sbjct: 249 IDPKMMDNIFSMILNKEDITKLVKELE-----VYEVSQICDEMTIYLKDKMLSRDNKFDL 303 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +++ L ++ L D + +T ++ + Sbjct: 304 LLFD--------------------RFFRILSDAKQLLAINSDGTFVLILTFMKMIEATNL 343 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + P ++ + + ++ V PE + + +++ + Sbjct: 344 RTIDDIINQVEKIEPKK--------ELISEKTTPIIESSLVKNPEIPQKEVIK-EKVNTL 394 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + K E A N ++ + + P E Sbjct: 395 IVEEETKIEEVTALDEVLIQTNNIIDLGITNSIETINYSTPFDELPITKPIE-----NQK 449 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 ++ + + E P ++ E D + +QL+ +L Sbjct: 450 EEKIEEIKELEIEHISFESEVSFNPTQEVEIIPLEDESDKFLDLYNQLTAKVYDRDYSLG 509 Query: 543 AWKEE--------SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 E+ D + + + + GS VEL +++ Sbjct: 510 ECFEKNFIFNGFSDDKLHIISYAQDEDRKLLFKYFGLIKAFAQDIFGSNVELDFKKEEAT 569 Query: 595 AVR 597 + Sbjct: 570 ILE 572 >UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMQ4_CYAP7 Length = 452 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 213/386 (55%), Gaps = 6/386 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ K+RPQT D++GQ + T L N ++L +I AYLF+G+RG GKTS R+LAK Sbjct: 1 MNYQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG C++C+ I G +D+IE+DAAS E RD++ + Q+AP Sbjct: 61 SLNCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGR 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE H LS + LLKTLEEPP +V F+L TTDP KL TI+SRC +F+ K Sbjct: 121 RYKIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRF 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + I +QLE I E I AL L+A+ ++G +RDA L +Q D V+ V Sbjct: 181 NNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDN-VTPVEVH 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LGT+ +D L+ A+ + E ++ +I + A G + +L ++L + + Sbjct: 240 QLLGTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQLLEFYTNALITLEN 299 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + N + + R++ELA + + + Q L ++ ++ R+ +E+ +L L Sbjct: 300 PKSPLNTLTSTTTQRIKELA--LNSNTVLNHQQHLRSCETQIKFSRLPRVMLEVAILGLL 357 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAV 383 + +P +S + Sbjct: 358 VQPTEVKIPLSSNGTKSSPKTTVNSE 383 >UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Candidatus Phytoplasma asteris RepID=Q2NK09_AYWBP Length = 653 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 236/484 (48%), Gaps = 11/484 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK+RPQTFADVVGQE ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 1 MSYLVLYRKYRPQTFADVVGQEIIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + I C C+ + D+ EID AS V++ R+L D QY G++ Sbjct: 61 AINCLSPIQGEAFCSCHFCQNFAKAN-TDITEIDGASYNGVDEIRELQDKAQYKAHAGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+L+ ++FNALLK LEEPPEHV F+L TT+ K+P TI SR F + L++ Sbjct: 120 KVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIFSRSQSFAFENLNL 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL I E++ A++ +A +EG +R+ALSL DQ A + ++++ V+ + Sbjct: 180 KNITAQLTKIAALENMFITEDAIKSIAYHSEGGMRNALSLLDQVSAYQNNLITSEDVANI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + +++ + + L++++ G + L+++++ + + Sbjct: 240 KGTVSASVIKKLFQNLLKKEATKTLQLLHKSIDSGKNIDILILDLIDAIKDYLICNAKNK 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL--- 357 + + L I + +TL+ +++L + ++ VE+ L+ Sbjct: 300 KYSKTSQLSQAQKILLLEE--TNHIDHFLRTLIKLQQDLKKSDQKKSLVEIAFLQICSLH 357 Query: 358 --AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 F + + V ++ A++ + + P + L Sbjct: 358 SFQFQADLQEFQQFVTNKTKISNNNQALLELDETNAEEHYEPTKPIQKKLENPPFYKTEE 417 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL---EKAPAK 472 + +Q A K + + + +++++ Q +PS K+P K Sbjct: 418 IKSIQFTPIANKKTPKIEKIEYLHSTLKDLQPQNNSTISELTQQNNLPSQNSLGTKSPTK 477 Query: 473 KEAY 476 Y Sbjct: 478 THPY 481 >UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 Tax=Ureaplasma RepID=B5ZAS2_UREU1 Length = 603 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 214/452 (47%), Gaps = 12/452 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP F DV+GQ + AL N + HAY+FSG RG+GKTSIAR+ A Sbjct: 1 MSELTLYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAA 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C C+ I + VDLIE+DAAS V+ R++ DN+ Y P ++ Sbjct: 61 SINCLKPNNGDCCEECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS ++NALLKT+EEPP+HV F+ ATT+ QK+P+TI+SRC ++ L+ Sbjct: 121 KVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ ++ + +E I A+ L + A+G+ RD LS+ DQ + + ++ Sbjct: 181 SELQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVT-NQKVIDIDLINKT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D+ + ++L+E + + + + I E GI EA +++ +L + Q + Sbjct: 240 FGLVDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTND 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +I+ + L+ + + L + ++ E+ L + + + Sbjct: 300 ETNLKKISIDELKKILSINFNANHL---LNNFISLYSHLKNSVNQVFEFEIYLYKIVNVN 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV-LAARQQL 419 + + P+ T +PP P A + + + + + L Sbjct: 357 NDK------LETKKTIPLIAIEKDKNT-LPPSPPIAKTTSISKEVNKVNENKDVINFNNL 409 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLA 451 + Q K S+ ++ Sbjct: 410 YQTQIFHHKKNSDNNEQETNIKYEEKLIDEPT 441 >UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S640_9ACTO Length = 765 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 158/502 (31%), Positives = 229/502 (45%), Gaps = 13/502 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP TFA+VVGQEHV L N + GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPATFAEVVGQEHVTAPLVNAVDGGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T+TPCG C +C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEQGPTSTPCGTCGSCVALAPDGPGSLDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPPE + F+ ATT+P K+ TI SR + + + Sbjct: 120 RFKVYIIDEAHMVTTQGFNALLKVVEEPPEFLVFVFATTEPDKVLSTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R LE E + EP L+ RA GS+RD+LS+ DQ +A + V+ ++ Sbjct: 180 PPTTLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEGVTYKSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG DD ++A+ + V ++ G + ++L L + ++ Sbjct: 240 VGLLGVTDDALLDETIDALAAHDAPGVFRAVDRVVEAGHDPRRFATDLLDRLRDLILLDA 299 Query: 298 SPAALGNDM------AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 P A GN M A + + T+ G E+ R+ +E+ Sbjct: 300 VPDAGGNGNGLLDCPPDRLDLMSSQASALGSATLSRMADTVHAGLTEMRGTTGPRLLLEL 359 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT-VPLPETTS 410 R L P ++ ++ P + A AP PE + Sbjct: 360 VCARML--LPGTDGSAAATLQRLERLERRMSIAGEHAGRPVAEPAVLGAPVRESRPEPAA 417 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A Q + V+ + + A + A RP P E A Sbjct: 418 APPPADQPGRPVREFVRRSQVAAQAPSVPAAPAQPAPRPAPEPPRAAPERPEPPRPEPAR 477 Query: 471 AKKEAYRWKATTPVMQQKEVVA 492 A+ A R A + + Sbjct: 478 AEPVAARPPADDGWPETTPPGS 499 >UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977980 Length = 562 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 145/455 (31%), Positives = 223/455 (49%), Gaps = 22/455 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LA K+RP +F+D+VGQ + L+ L I HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MSSIALALKYRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE+G +TPCG C +C + R +D+IE+DAAS ++D + L++ +Y P+ GR+ Sbjct: 61 ALECESGPISTPCGSCASCVAALENRHIDIIEMDAASSRGIDDIKKLIEQTKYRPSFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ +FNALLKTLEEPPE VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQIPH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + +ILN+E +++E AL+++AR+ GSLRD L+L DQAI + +VS M Sbjct: 181 RLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCKNHIEVASVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + ++ ++V ++ E E +L EM+ L Sbjct: 241 LGIVDPQVLKEYFQGILHHQHDKVSGILQVLYE--YECEMILDEMMLFLK---------- 288 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + PP + + + L + L D + + ++ Sbjct: 289 ----------EKLLQRDSDFPPLLLDRFARILTESKSLLNLNTDGAFVLLLCAMKMQEAI 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + ++ A + + + Q P P SQ A + Q Sbjct: 339 KVKDIETMIEELENEIFGANQNKVLNSTSALSSLPSSPQNPQAPQTPADSQNPQAFESPQ 398 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 + A + + +R A + + Sbjct: 399 APAQTPSLDSQKTLGALHFQTLIQKITDRNAELGE 433 >UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and tau subunit n=3 Tax=Corynebacterium RepID=C0WHV4_9CORY Length = 904 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 150/559 (26%), Positives = 236/559 (42%), Gaps = 7/559 (1%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 GQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNCE G T+TPCG CD+C Sbjct: 2 GQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHGPTSTPCGKCDSC 61 Query: 80 REIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G +D+ E+DAAS VED R+L D YAPA R+++++IDE HM+S N Sbjct: 62 VSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAHMISPSGAN 121 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L ++ L+ + E + Sbjct: 122 ALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPAMKGLLQRTVASEGVQ 181 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 E ++ A GS RD LSL DQ +A +G ++ +LG D + + Sbjct: 182 VEDAVYPMVIEAGGGSPRDTLSLLDQLLAGAGPDGLTYDLARPLLGVTDVTLLDDTIATL 241 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM----AAIELR 312 E + + A I+ G + V++L L + ++Q P A+ + Sbjct: 242 AENDKAGLFAQIDNVIEAGHDPRRFAVDLLDRLRDLMILQAVPGAIDAGLVSAPTDRAEV 301 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPR 372 + A+ + T+ +L A R+ +E+ L P + Sbjct: 302 LTAQAQRFSGPQLTYLASTVNDRISDLTGATSPRLLLEIMCAHLLIGTSSGAAPGAALGA 361 Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 S P A S P QA +Q Q Q A Sbjct: 362 ASQPGQLPQAAQPSGAPQSAQASQPNQAGQGAQSAQAAQSGQPGQSGQAAPSAGNGPAFS 421 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 A ++ A R S + Q P +A + ++ T + ++ Sbjct: 422 GAQDPQSAAAAIIARRRAKSQAQQNQPAPGSTAPAEPQQRQNQAATGPTGSEVPAQQSNQ 481 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAV 552 + +P +++ A A + +Q + EQ A A + + Sbjct: 482 AAAGTEAQSGQATSPSPSSQPEATAQQSRGEHEGPAQSAQATPAEQSAQPAPAAQHEQPA 541 Query: 553 CLHLRSSQRHLNNRGAQQK 571 ++ + +Q++ Sbjct: 542 QTESTGAENQGRSELSQEQ 560 >UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylobacter RepID=A7ZDZ3_CAMC1 Length = 554 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 150/404 (37%), Positives = 223/404 (55%), Gaps = 25/404 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+ F +++GQE V +L + L R+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALV 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G T+ PC VC C + R +D+IE+DAAS K++D R+L++ +YAP R+K++ Sbjct: 62 CEKGPTSRPCEVCAQCVMANESRHMDIIEMDAASHRKIDDIRELIEQTKYAPTAARYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + +I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHFRFKQISRYEI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL++E +++E AL++LAR+ GSLRD L+L DQAI G G ++ +V+AMLG Sbjct: 182 VKHLEFILSKEGVSYEREALEILARSGGGSLRDTLTLLDQAIIYGAGNITKSSVAAMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++E + A+ + L+ E E E ++ E+L L + Sbjct: 242 LDPSRIEQIIEHVANADKNAIRVLVTELET--YEPEMIIDEILANLKQ------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R + + +++ L + L + D + + L + Sbjct: 288 --------RFLDNDPKFSLLIYERFFRILAQAKSMLSVSSDNGFVLMLMLFMMIEALNLQ 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + E + VA V+ P + A ++AP P + Sbjct: 340 DIDEAIKLAKIEPSVA---VIEPKAGMSEQILAVKEAPKTPYEQ 380 >UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Tax=Nostocaceae RepID=Q8ZSE1_ANASP Length = 429 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 199/359 (55%), Gaps = 5/359 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQ ++V+GQEH++ L N ++ +I AYLFSG +G GKTS AR++AK L Sbjct: 2 YRPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSL 61 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC+ T PCG C++C+ I VD+ E+DAAS + VE R+L+ Q+AP RF Sbjct: 62 NCQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRF 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDE H LS S+ ALLKT+E PP HV F+ TT+ K+P TI+SRC +F K + V Sbjct: 122 KIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPV 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I ++E I P A+ +A+A +G LRD+L L DQ G+ +++ V + Sbjct: 182 SLVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWEL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ + L++ E +++ + ++ + G + A+ ++ L + + + +P Sbjct: 242 SGTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTNPN 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + +++ I+ L+ R+ L D + +E TL+ + Sbjct: 302 GRHLTQLEQDTWEELVSISQLWNIDQIRNAIAILM-ARQSLMRDEDAHLWLEATLIEIV 359 >UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Tax=Helicobacter RepID=C5ZV42_9HELI Length = 586 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 218/417 (52%), Gaps = 30/417 (7%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + + LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A Sbjct: 1 MEHNEALALKYRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + L CE G A PCGVC NC R +D+IE+D AS K++D RDL++ +Y P Sbjct: 61 RALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNM 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+++IDEVHML++ +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K Sbjct: 121 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I L++IL++E+I ++ AL +L R+ GSLRD L+L DQ I + ++ + Sbjct: 181 ISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITADSC 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + MLG ++ L E + + + E ++ I + E E LL EM L + Sbjct: 241 ANMLGLINPQSLNMLFEEIFKKDKESLLKHIEGFSE--YECEMLLDEMAIFLKEKLL--- 295 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 R T I +++ + ++ L D + +++ + L Sbjct: 296 ----------------RGEDTRYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKML 339 Query: 358 ------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + E + S + T P P + ++ P PL ET Sbjct: 340 EALKIQEIDKAIETLEKGLTLPSKENQTKESKQTFENTPTNPTNTIKENPIKPLEET 396 >UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 Tax=Clostridium botulinum RepID=C3KSA4_CLOB6 Length = 472 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 115/382 (30%), Positives = 208/382 (54%), Gaps = 5/382 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP+ F DVVGQ L N + G I HAYLF G RG GKT+ AR+ AK +N + Sbjct: 2 LYLKYRPRFFKDVVGQGENTKILLNQIRTGHIGHAYLFCGNRGSGKTTTARIFAKAVN-Q 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 P + ++I+ G +D++E+DAAS +ED R++++ QYAP+ +++V++I Sbjct: 61 HNKNGEPLDNELS-KKIDAGNCIDIVELDAASHNGIEDIRNIIEQAQYAPSECKYRVFII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS + NA LK LEEPP++V F+LATTDPQKLP+T+LSRC +F K +DV I + Sbjct: 120 DEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQRFDFKRIDVTDIFN 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L++I E I + ++L+L++ A+G++RDA+S+ DQ +++ V+ +LG + Sbjct: 180 RLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTM--EEITYSNVTTLLGIMI 237 Query: 246 DDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 ++ ++ ++++ + + LIN+ + L+ ++ + ++ ++P Sbjct: 238 EEDIRNIAFSIIKKDTISALQLINKAVMQNKKDANQLMKDLQKYFRNVLVLAINPKTEIA 297 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + + M L + + ++ Y + L + Y + +E+ ++ + + Sbjct: 298 TIEEEKQVMINLGKQVHKENLIKYIELLQEKINDSKYTYNNLTLLEVAVIELVGYKTEEE 357 Query: 365 LPEPEVPRQSFAPVAPTAVMTP 386 + + + V Sbjct: 358 KISDIIKKVLKSTNTNPVVANN 379 >UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR32_9RICK Length = 553 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 131/422 (31%), Positives = 233/422 (55%), Gaps = 13/422 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + LA ++RPQ F +++GQ+ ++ ++ N + L RI +AYL +G RG GKT+ AR++AK +N Sbjct: 6 KPLALRYRPQKFQELIGQDSMVISIQNAIKLKRIPNAYLLTGIRGTGKTTTARIIAKAIN 65 Query: 64 CETGITATPCGVCD-----NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 C+ + C +C I +D++E+DAAS+T ++D R++L+ +Y P+ Sbjct: 66 CKVDFASD--QKCSEGDFCHCESITNSNHIDILEMDAASKTGIDDIREILEASKYHPSTA 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KV++IDEVHMLS+ +FNALLKTLEEPP H+KF+LATT+ +K+PVTILSRC +F L+ + Sbjct: 124 EYKVFIIDEVHMLSKQAFNALLKTLEEPPPHLKFILATTEVKKIPVTILSRCQRFDLRRI 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA---SGDGQVSTQ 235 VE+++ L I ++E + +L L+++++EGS+RDALS+ DQAI +V+ Sbjct: 184 KVEEMKSFLRKICDKEEADVDENSLTLMSKSSEGSVRDALSILDQAIITYNLMGEKVTED 243 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG DD + + L+ +VE N E+ + + E G + + +L +L + + + Sbjct: 244 KVRTMLGLADDTKIVDLMSYIVEGNIEKSINAVEEIFDIGADPKLVLHSLLDVCYLMTRT 303 Query: 296 QLSP--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + R+ + + + T + + + L+ G ++L P+ + +M L Sbjct: 304 KTLGKISKDLSVSESDAERLNVMVKDLDMTYLTMLWHFLIKGLEDLNLYPNLSIAFQMLL 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R MP P+ + + + T Q + + + + + Sbjct: 364 TRLCHLKN-MPDPQSVYESKEESKINTEHNKTSNQKINLQSTTQIKNVSQEIESPKQNLN 422 Query: 414 AA 415 Sbjct: 423 QN 424 >UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601S8_MYCH2 Length = 726 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 115/403 (28%), Positives = 213/403 (52%), Gaps = 8/403 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y RK+RP+ F+D+VGQ+ +L +L N + G HAYLFSG G GKT++A++ A + Sbjct: 12 YIAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI 71 Query: 63 NCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C +D+IE+DAAS V++ R++++N P +K Sbjct: 72 NCTHKTDLIEPCQNCIK----NFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS +FNA LKTLEEPP+H+ F+LATT+ K+P+TILSR +++ AL + Sbjct: 128 IYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALKED 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I H+LE IL +E I +E AL+ + ++GSLRDA+S+ +Q G G V+ + ++ + Sbjct: 188 EICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATFGSGYVNQKNINELF 247 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G ++ + ++ V A+ A+ + ++ + + + ++ L ++ L+ + + + Sbjct: 248 GLVNKEILVNFVNALFLADSKISYEILEQISFQSKNFQLFLESLINLVKEWIIWKSTKTN 307 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L I + + K++ +A + + +E+ ++R L+ Sbjct: 308 ELLEFYS-NFDLENL--KISQDFAFKFLEIAFSSLKDINFADFQNLTLEIFIMRILSLSN 364 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 + + + + P ++ + + + P Sbjct: 365 LEISDQNNIKFKKIEENKVDKIDIPEKITEKVSEKVSEIKSTP 407 >UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8I9_9BACT Length = 648 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 152/479 (31%), Positives = 227/479 (47%), Gaps = 16/479 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RPQ+F+DVVGQ + + LS GRI HAYLFSG RG GKT++ARLLAK + Sbjct: 2 YQSLYRRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC A PCG C +C I GR +D++EID AS V++ R+L NV A G +KV Sbjct: 62 NCTARNGAEPCGQCQSCLAIRDGRSLDVVEIDGASNNTVDEVRELKANVGLASFGGNWKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT+P K+P TI SRC L V Sbjct: 122 YIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQHIPFHGLSVPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I QL+ + E ++ E AL +AR+++G +RD LSL +Q IA G G V+ AVS + G Sbjct: 182 IVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIALGGGSVTKAAVSQLTG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV------Q 296 ++ S + ++ + R ++++++ G E L+ + + + ++ Sbjct: 242 GGSTEEIQSWL-SLCRTDPARSVSVLSDMFLSGALPERLVSNVFSSVRNLWLLVRWGQAG 300 Query: 297 LSPAALGNDMAAIELRMRELARTIP---PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 L+ A D LR E AR + + R+ + + L Sbjct: 301 LAGTAFSEDEEGWLLREGEAARGHSGSLESFLVRLAALTPQIRRGMGSSVVA------GL 354 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + A P P + + P P + E ++ Sbjct: 355 VSMWAVDALSGKEPAVAEPPVMKPSIPANRVFSSPAPAAPAQDGGKTGVSSEREPSASRA 414 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + + + A + A++E + + V P + +A + Sbjct: 415 PEPALTVDLPPRETENEPQNAQPFQEEAEQPASVEEKVNASSPVSLEEDPGRMAEAVDE 473 >UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinobacteria (class) RepID=B0RIG8_CLAMS Length = 837 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 157/612 (25%), Positives = 248/612 (40%), Gaps = 51/612 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+ FA+++GQ V L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 11 ALYRRYRPENFAELIGQTQVTDPLRTALRTNRVNHAYLFSGPRGCGKTTSARILARCLNC 70 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ + +D++EIDAAS V+D RD+ + +APAR R+K+ Sbjct: 71 AEGPTDTPCGVCPSCVELSRDGSGSLDVVEIDAASHNGVDDARDIRERAVFAPARDRYKI 130 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + Q Sbjct: 131 FILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSRTHHYPFRLVPPAQ 190 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + +EH+ EE + P L L+ RA GS+RD LSL DQ IA + + V + A+L Sbjct: 191 MLDYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQLIAGSEDESVEYERAVALL 250 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--- 298 G +++A+ + A ++ G + + ++L L + +V + Sbjct: 251 GYTHAALLDEVIDAIARHDAAAAFAGVDRVIQTGQDPRRFVEDLLERLRDLIIVGATSVE 310 Query: 299 --PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L RMR A ++ + E+ A R+ +E+ + R Sbjct: 311 GAAAVLRGTPEDELERMRAQAVAFGAVELSRAADVVNAALTEMTGATSPRLHLELLVARV 370 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + + + A Sbjct: 371 LVPASDDTHRGALARVERLE---------------RRVGVADAGADPAPATPVAAAAPAA 415 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 A A + AA A + A + Q + E +P+ Sbjct: 416 APAPASAPAPAATSAPVAAPDPAPTPDPAPAAKSTETGATTQTPAASAPDESSPSSSGTG 475 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 A P P ++ RD W + V + K Sbjct: 476 APAAEAPSAPAPTAPVGPVTFEQ-------------------LRDSWPSVVEAVEKAKRS 516 Query: 537 EQVALNAW--KEESDNAVCLHL--RSSQRHLNNRGAQ-----QKLAEALSMLKGSTVELT 587 + + +D+ + L + RGA L A+ + G V+ Sbjct: 517 AWLVAVTATPRALTDDVLTLSFVSANDAERFKERGAPGQGVSDILRTAILDVLGIRVKFI 576 Query: 588 IVEDDNPAVRTP 599 + + P Sbjct: 577 ARVEPHGGSAAP 588 >UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 Tax=Rickettsia RepID=A8F087_RICCK Length = 544 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 128/425 (30%), Positives = 217/425 (51%), Gaps = 42/425 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y ARK+RP FA++ GQE ++ L+ + R+ YL +G RGVGKT+ AR++AK + Sbjct: 10 YIPFARKYRPGNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKTV 69 Query: 63 NCE----------------TGITATP-----------------------CGVCDNCREIE 83 NC A P C C NC Sbjct: 70 NCSALITEDTVGNSVKLKYNEQGAKPIGNRRVTSNNVGKFKSIDYTIRTCEECTNCISFN 129 Query: 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D+IEIDAAS+T V+D R ++++ +Y P +G+ K+++IDEVHMLS+ +FNALLKTL Sbjct: 130 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL 189 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP H+ F+ ATT+ QK+P TI+SRC ++ L+ L E+I LE+I +E++ + AL Sbjct: 190 EEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKADIEAL 249 Query: 204 QLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 ++++ +EGS RDA+S+ DQA + D +S+Q ++ MLG +D + E ++ Sbjct: 250 RIISFKSEGSARDAVSILDQAASMSAKSDNIISSQVINQMLGLVDTSVIIEFFEYIIRRE 309 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 E+ + LIN+ + + E + + + + V++ P + R++ + I Sbjct: 310 TEKAINLINKLYSFSVNLEIFIESVADFIAYLNKVKMLPNYRLPIYESFNDRIKNILSEI 369 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP 380 + + +Q G E+ + ++ EM +++++ L + +V Q+ Sbjct: 370 SLPYLSILWQIYNKGVVEIKISYNQLTETEMLVIKSIYSRSLPLLTDFDVNNQNLNQSIN 429 Query: 381 TAVMT 385 + Sbjct: 430 PEIKK 434 >UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK0_9BACL Length = 569 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 207/391 (52%), Gaps = 18/391 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L RK+RPQTF D+VGQ H+++ L N + +I HAYLF G+RG GKTSIA++ A + Sbjct: 2 FQALYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 N G EI Q VD+IEIDAAS V++ RD+ + +++ P G++KV Sbjct: 62 N----------GN-----EIYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKV 106 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TILSRC +F K L EQ Sbjct: 107 YIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFEFKNLSQEQ 166 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +L++I EE++ E A++ +A A+G LRDA+S+ DQ +++ + + Sbjct: 167 LIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYA-EEITLNHILEVTS 225 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ +D L +++ + + + NE A+ + + LL +++ + I + + Sbjct: 226 SISEDDILEFYRGLLQGDVTKSLLKYNEFVAQAKDTKLLLNDLINVTRDIVVYKNLKDT- 284 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 A ++ ++ + L + + ++ + +++ +++ + Sbjct: 285 -KHTAYNVEKIVTEIDSVSFDYFYKIIEYLSQTEQHIRFSTEYMSYMQICIVKICSKEEG 343 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP 393 + + + + + ++ Sbjct: 344 INQNNSTIGSGQNSMTSSRNIELENRIKVLE 374 >UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 Tax=Alphaproteobacteria RepID=B1M6N3_METRJ Length = 637 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 149/402 (37%), Positives = 225/402 (55%), Gaps = 9/402 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP F D++GQ+ ++ LANG + RI A++ +G RGVGKT+ AR+LA+GL Sbjct: 27 YRVLARKYRPTNFGDLIGQDAMVRTLANGFAANRIPQAWMLTGVRGVGKTTTARILARGL 86 Query: 63 NC------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 N +TG T + + +C I + R +D++E+DAAS T ++D R ++D ++Y P Sbjct: 87 NYARAGQPDTGPTVSMPELGLHCAAIMESRHMDVLEMDAASHTGIDDVRAIIDGIRYGPV 146 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY++DEVHMLS +FNA LKTLEEPP H KF+ ATT+ +K+PVTILSRC +F L+ Sbjct: 147 SARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSRCQRFDLR 206 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ + L + E + E AL + RAAEGS+RDALSL DQAIA G G ++ Q+ Sbjct: 207 RVEAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGSVRDALSLLDQAIAHGAGTITAQS 266 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L L EA++ + A + G + +L ++ H + ++ Sbjct: 267 VRDMLGLADRARILDLFEAVMRGSVPAAFAELRAQYDSGADPSVVLSDLAAFTHLVTRLK 326 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + P A + + R+R A + + +Q LL E+ AP EM ++ Sbjct: 327 VVPEAAADPTLSETERVRGAAFADKLSIRALSRAWQILLKAIPEVQAAPRPLAAAEMAIV 386 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 R A+ +P P+ + + A A P P Sbjct: 387 RL-AYAADLPTPDEALRQLRAEAAAAPADEAPAVSARPPLPP 427 >UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DD60_9PROT Length = 487 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 127/391 (32%), Positives = 216/391 (55%), Gaps = 24/391 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L+ RI +AYLFSG RG GKT+ AR+ +K L C Sbjct: 2 VLALKYRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E GI+++PC C++C+ + R +D+IE+DAAS K+ED R+L+++ +Y P+ RFK+++ Sbjct: 62 EKGISSSPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIEHTKYKPSISRFKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + ++I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L+ +L +E++ E AL+L+ ++A+GS+RD+L+L DQAIA + ++ V MLG + Sbjct: 182 SFLQKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLLDQAIAYSNYNITLDKVVEMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + + + + + + ++ +I + IE + + L Sbjct: 242 NPEIISKIFKLIFDGDKKEIIEIIKQIKDYDIESIIDEIIL--YLKEAMFY--------- 290 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 +P +Q ++ + ++ + Y D + + R + Sbjct: 291 -------------GNLPLITMQRFFNIISDTKELIKYQNDNEFILSLMFFRMIEATKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + + + + + P P+ Sbjct: 338 IDDLIKSFEQSININSYQIKKVDIQKPNPEE 368 >UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 Tax=Campylobacter RepID=B9KFI3_CAMLR Length = 510 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 139/384 (36%), Positives = 205/384 (53%), Gaps = 22/384 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+TF ++VGQ V +L L R+ HAYLFSG RG GKTS AR+ ++ L Sbjct: 3 QALAIKYRPKTFDELVGQSTVSISLKYALENNRLAHAYLFSGLRGSGKTSSARIFSRALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PCG C C G +D+IE+DAAS +ED ++L++ V+YAP+ RFK++ Sbjct: 63 CENGPNANPCGKCSQCVSSLNGSNIDIIEMDAASHRSLEDIQELIEQVKYAPSMARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ + NALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + ++I Sbjct: 123 IIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQISQQEI 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL +E I++E AL+L+AR+ GSLRD L+L DQAI + TQ ++AMLG Sbjct: 183 LKHLEWILEQEKISYEKEALKLIARSGNGSLRDTLTLLDQAIVYCQNHIQTQKITAMLGF 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +A++ ++V + E E ++ EM+ L + + Sbjct: 243 LDPAKIEEFYQAILANEKDKVFEFLKEFED--YEASNVIDEMIFFLKEAFFAKNN----- 295 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + +++ L + L + D + + + Sbjct: 296 ---------------LFSMLIYERFFRILSRAKTMLNSSDDDSFVLCVMAFMLIEATYLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPT 387 + E + + +P P+ Sbjct: 341 SIDEAIKGSKQDSTPSPKQQEIPS 364 >UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX3_9PROT Length = 561 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 162/437 (37%), Positives = 238/437 (54%), Gaps = 5/437 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR+WRPQ F+D+VGQ+ V+ L N L+ G + HAYL G RGVGKT+IARL+A Sbjct: 1 MSYLVLARRWRPQQFSDLVGQDVVVRTLKNALASGNLAHAYLLCGIRGVGKTTIARLMAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NCE PCG C CR I G +D+ E+DAAS T V+D R++LD V+Y P+ + Sbjct: 61 AANCEQPEDGEPCGRCKACRGIADGSNLDVQEMDAASHTGVDDVREILDGVRYPPSSLKT 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDE HMLS+ +FNALLKTLEEPP HV F+LATT+ +KLPVT+ SRC +F L+ L + Sbjct: 121 RVYIIDEAHMLSKSAFNALLKTLEEPPAHVLFILATTESEKLPVTVRSRCQRFDLRRLGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I L H+ +E I+ + A +ARAA+GS+RDALSL+++ +A +++ V A Sbjct: 181 SEIAAYLTHVFEQESISADSDAAAAIARAADGSVRDALSLSERVLAYSGKKLALADVDAA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + SL A+ + V+ + AA G LL E+ L H+++ + + + Sbjct: 241 LGQIGVARIRSLSHAIFAGDALAVVEQMRAAAGTGHGARTLLQELARLWHQLSCLLVDES 300 Query: 301 ALGNDMAAIELRMRELAR-TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 LG ++ + + E R + + L YQ L+ G ++L D RMG EM L+R Sbjct: 301 LLGEEVDLEQRQWLEQYRDKLSGPALDLRYQVLISGMRDLSL-VDERMGAEMILMRLCGL 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + AP+ A T + + S + Sbjct: 360 NA---ISAVGALPAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKD 416 Query: 420 QRVQGATKAKKSEPAAA 436 + ++PA Sbjct: 417 AAGANSAAEMSNQPAGQ 433 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 9/187 (4%) Query: 454 TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 P+P+A + A + + + A L+ AA++ Sbjct: 367 ALPAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKDAAGANSAAEM 426 Query: 514 AAEAIERD--PWAAQVSQL-SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 + + + W V+ L + + + E V L L Q+ + N ++ Sbjct: 427 SNQPAGQRCKDWPQVVAVLHEFKPGLAAMLEHVQCLEFSAKVRLALDKHQQAMINASDRR 486 Query: 571 KLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 A + G V + + R+ + + A+ R+ AD ++Q L + Sbjct: 487 ----AFAEWLGREVFWE--SRQAGEGESISQERERLARAEKARMRQHAEADPHLQALMQE 540 Query: 631 FDAELDE 637 DA+L Sbjct: 541 MDAQLVN 547 >UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax=Mycoplasma pulmonis RepID=Q98RG0_MYCPU Length = 836 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 126/481 (26%), Positives = 223/481 (46%), Gaps = 17/481 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RP TF +V GQ+H++ L N + +I H YLF+G RG GKTS+A++ A Sbjct: 22 MNYKALYRVYRPTTFDEVNGQDHIVATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFAT 81 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC PC +C + +D+IE+DAAS V+D R L + ++ P +G Sbjct: 82 ALNCIHKNDDFNPCQICIE----NSNKNIDIIEMDAASNNSVDDVRRLNEELKSLPLKGE 137 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++Y+IDEVHM ++ +FNALLK+LEEPP+HV F+ ATT+ K+P TILSR +F+ + + Sbjct: 138 YRIYIIDEVHMFTKSAFNALLKSLEEPPKHVIFIFATTESHKIPNTILSRVQRFNFRRIS 197 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I +EP++L +A A GS RDALS+ DQA G G+++ + + Sbjct: 198 NDVIIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSIADQASIYGQGKITLKNLIT 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 G ++ ++L+ V N + ++E G + E LL+ ++ ++ + + + Sbjct: 258 SFGISSNESVINLINNTV-FNLYEAINNLDEFKKNGADPEYLLISLINIIKDFIVFKKTN 316 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L ++ I + + + L + +E+ +++ Sbjct: 317 NLSFLALLSFDEIDLIK-----IDLQKSYFIIEEAMKTLEFLRISEMPFDAIEILIIKVH 371 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ----VPPQPQSAPQQAPTVPLPETTSQVL 413 + E E + + + S + ET+ Sbjct: 372 KKIGQEEEKENENEKLKIIQNSIDNEKIKDELLNYASASKGSIGTNTIETSILETSEDEE 431 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A G K E + + N+ ++ + + E + ++ Sbjct: 432 AQSLTQILNSGEMDLKLKEKTNNSWDKTQNHKQQSNTDLISKTNEIITNLNENEASISEL 491 Query: 474 E 474 + Sbjct: 492 D 492 >UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Leuconostoc citreum KM20 RepID=B1MVT7_LEUCK Length = 604 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 159/542 (29%), Positives = 255/542 (47%), Gaps = 21/542 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RP+TF D++GQE + L N + + HAYLFSG RG GKTS A++ A+ Sbjct: 1 MAYQALYRVYRPRTFEDMIGQEVITQTLKNAIETHQTGHAYLFSGPRGTGKTSAAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N T + D++E DAAS ++VED RD+L NV YAP F Sbjct: 61 EVNGIAPETDD-------------SQISDIVEFDAASNSRVEDMRDILSNVDYAPIEAEF 107 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+PVTILSR +F K +D Sbjct: 108 KVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRFEFKRIDG 167 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L +L ++HI + AL+++A AEG +RDALS+ DQ IA G V+ + Sbjct: 168 QAIAAHLADVLKQQHIDFDQDALRIIANVAEGGMRDALSILDQVIAFGTDTVTVDNALQV 227 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+ Q + + A+ + + L+++ G + + + +++GLL I + ++P Sbjct: 228 TGSTTTTQLMQYLTAVTNSQTPEALKLLHDILVAGKDAQRFVSDIIGLLRDIMLANIAPE 287 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR---AL 357 + + +R LA+ + IQ L +K+L + +E+ ++ + Sbjct: 288 LIKSTAP--LNDLRTLAQQLNSQQIQAMMGELDDIQKQLLQTMQSDVYLELLTVKLGMMI 345 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV-LAAR 416 R + + +P ++ PT S Q T + E T ++A+ Sbjct: 346 QGDQSHTESTQHATRNTSSFASPESLNDPTVTTQPVSSDTQPDTTTVIAEPTQNEGVSAQ 405 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + L+ K +N +L R + + A Sbjct: 406 ENLEATHDTVKPIAQSSQYDESEAVSHNNSLARTGQLAVFAILQAAKRDTLSRSKSTWAT 465 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEK--TPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Q +A+P A + P L + + + ++ A + + +LP Sbjct: 466 LISTFNVAHQALLTIASPVAASQEGLVVAFDYPALLDQALKDVVLQEKLIAALREQNLPT 525 Query: 535 LV 536 + Sbjct: 526 AL 527 >UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5VA21_9CORY Length = 977 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 217/480 (45%), Gaps = 15/480 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +F ++VGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPGSFNELVGQEQVTVPLSAALDNGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+ PCG C++C + +D+ E+DAAS V+D R+L D +APA R+++ Sbjct: 62 VNGPTSKPCGKCNSCVSLAANGPGNLDVTELDAASHNGVDDMRELRDRAMFAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + E E L+ RA GS RD LS+ DQ +A +G ++ Q +L Sbjct: 182 MRGLLERTVAAEGAIIEESVYPLVIRAGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + + A+ + + +++ G+ ++L L + ++Q P A Sbjct: 242 GVTDDTLIDATIAALATNDRASLFTTVDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDA 301 Query: 302 LGNDMAAIELR----MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + A+ I L G L A R+ +E+ + L Sbjct: 302 VNLGLVDAPTDRGEILLQQAQEFDSQRIPRIAGILNDGLSSLKGATSPRLLLEILCAKML 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 EP ++ + P S+ + P+ + + Sbjct: 362 --------IEPGGQAAPAPALSAPSARPTPAAPASTPSSKYERPSQRRAREAQEARNVAE 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + V+ +AK E + R + + +K A Sbjct: 414 KPEVVEAPVEAKPRESEESPETRSTPPQPASTSVHAQPIDAIKNAWDKIRSTVSKTNAVA 473 >UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=B7KLR0_CYAP7 Length = 462 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 117/387 (30%), Positives = 195/387 (50%), Gaps = 4/387 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L K+RPQ F D++GQE + AL N ++ +I ++YLF+G RG GKTS AR+LAK Sbjct: 6 NYQPLHLKYRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTARILAKA 65 Query: 62 LNCETGITAT--PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC++ +T PCG C +C+ IE+G +++ EIDAAS V+D R L++ +AP GR Sbjct: 66 LNCKSTPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQSHFAPIDGR 125 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++V+++DE HML+ S NALLKT+EE P F+L TT+P KL TI SRC F+ K Sbjct: 126 YRVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFNFKNTS 185 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + L I +E+I P ++ +A A G LRD ++ ++++ V Sbjct: 186 LKTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLRD-GLQLLSGLSLLSCEITSDLVIK 244 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LV+ ++ ++ E G +++L + + +++ Sbjct: 245 ATNGLSPQTISQLVQKILTGQTLDLLIAGRELIEEGKTPQSILKSLTETYRDLLLLKSDF 304 Query: 300 AALGND-MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ +++LA + + Q L+ +L + + +E+ LL+ + Sbjct: 305 KCHTLISNSSNLTHLKQLADSTELEILDQGLQQLIQSEAQLKTNLNATVWLEICLLKLIP 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMT 385 P P Q + V Sbjct: 365 ATPIFLPPISNHNGQRKREQQQSEVSP 391 >UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYP8_9ACTO Length = 768 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 154/579 (26%), Positives = 244/579 (42%), Gaps = 28/579 (4%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + L L R+ HAYLFSG RG GKT+ AR+LA+ LNC G T TPCG C +C E+ Sbjct: 1 MSEPLKAALKANRVTHAYLFSGPRGCGKTTSARILARCLNCVEGPTDTPCGKCASCIELA 60 Query: 84 QGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 G +D++EIDAAS V+D R+L + +APAR R+KV+++DE HM++ FNALLK Sbjct: 61 TGGPGSLDVVEIDAASHNGVDDARELRERAAFAPARDRYKVFILDEAHMVTPQGFNALLK 120 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 +EEPPEHVKF+ ATT+P+++ TI SR + + + + + L + E I+ Sbjct: 121 LVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPGDVLMPYLSSLCAAERISVAEG 180 Query: 202 ALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 L L+ RA GS+RD+LS+ DQ +A + +G +S + A+LG D +V + + Sbjct: 181 VLPLVVRAGGGSVRDSLSVLDQLMAGAENGVISYERAIALLGYTDGTLLDGIVTNLHAGD 240 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA----AIELRMREL 316 G V + G + + + L L + ++ L+P + RM + Sbjct: 241 GSAVFDALERMVDSGHDPRRFIEDFLQRLRDLLVISLAPEGARTLLQGIPVEQSERMYQQ 300 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFA 376 A+ T + + + A ++ VE+ + R L A Sbjct: 301 AQQWGATKLSKAADLTDEALRSMVGATSPKLQVELLIGRIL-------------VEIQGA 347 Query: 377 PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAA 436 A Q +A AP V P S AR++ +R++ +AK E + Sbjct: 348 AKASVERAITDQGGDSAGNASSDAPVV-YPSGLSGAALAREEARRLREMQEAKAREAQSV 406 Query: 437 TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT-PVMQQKEVVATPK 495 + + A + L + V A PV A PV VV+T + Sbjct: 407 PVSPVHSAPAAQPLQPIAPTVSAPPVSVEPTPTEEATVPITPTAEQAPVTTAIPVVSTVE 466 Query: 496 ALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-----QLSLPKLVEQVALNAWKEESDN 550 + + +A AE + W +V + ++ E Sbjct: 467 PVYEVPPITPLATVAEPAVAEVKLIEKWDVFTQIFLSEHAGWKNVVAALKVHQENEVEV- 525 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 L L+ +A + G + V Sbjct: 526 IFQLPTVEQAEKLSGEKGTTIVAGVVEKTLGVVKRVKFV 564 >UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Leuconostoc mesenteroides RepID=Q03ZG9_LEUMM Length = 575 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 153/590 (25%), Positives = 264/590 (44%), Gaps = 30/590 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L R +RP++F D+VGQ+ + L N ++ + HAYLFSG RG GKTS A++ A+ Sbjct: 4 AYQALYRVYRPRSFDDMVGQKIITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFARE 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +N T + D+IEIDAAS V++ R++ D YAP +K Sbjct: 64 VNGIAPETDD-------------SQIPDIIEIDAASNNGVDEIRNIRDGANYAPIESEYK 110 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+P TILSR +F K +D + Sbjct: 111 IYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRIDND 170 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ IL +E I+ + AL ++A AEG +RDALS+ DQ +A G V+ + + Sbjct: 171 TIQARMAEILQKEGISFDDDALHIIANVAEGGMRDALSILDQVLAFGADHVTLENALQVT 230 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G+ Q ++ ++ + + E + +++ G + + ++LG+L + + +++P Sbjct: 231 GSTTASQLVTYLQQVSNYDTESALQTLHDILLEGKDAVRFVADLLGVLRDVMLAEVAPN- 289 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 A ++ L + + IQ TL +K+L + +E+ ++ Sbjct: 290 -LIKTTAPLADLKALTIKLGTSRIQQMMVTLDDIQKQLLQTMQSDVYLELLTVKL----- 343 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQV--PPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 MP PE VP + + V + + ++ P E T + A + Sbjct: 344 SMPEPEQTVPAKQSSNVIKEKPQNIDDIVKASKNTEVHEEQVVEPAIEKTPVEVPAVENA 403 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + ++ A A + A + A Q A+ A Sbjct: 404 EYEDLLVRTGQNAVFAVLIAAKRDALARVKNAWSDLLRQFNVTQQAMLTIAEPVAASEQA 463 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA-IERDPW----AAQVSQLSLPK 534 + + + + I +D W A+ V++L + Sbjct: 464 VVLAFDYPVLLEQALHDATLQNHLVQQLQSQNLPSELVFISQDEWTSDRASYVNKLKTGE 523 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + + + ++ N + ++ Q N K+ L G + Sbjct: 524 TPQIQLEDVPRVKAANLSAIPTKTPQESSNKE---LKIVSEAKELFGEDL 570 >UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRC3_CLOPE Length = 531 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 128/478 (26%), Positives = 239/478 (50%), Gaps = 9/478 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP TF V+GQ L ++ +I H+YL G RG GKT+ AR+LAK +NC Sbjct: 2 LYEKYRPNTFESVIGQGENAEILKKQVASKKIAHSYLLYGERGSGKTTTARILAKAINCL 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + I PCG C NC IE+ + +D++EIDAAS V++ R+++D+++YAP ++KVY+I Sbjct: 62 SPINGEPCGKCANCIAIEEKKAIDVVEIDAASNNGVDNIRNIIDDMKYAPTSMKYKVYII 121 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HMLS+ + NA LKTLEEPPE+ F+L TT+ LP+TILSRC ++ K +DV+ I + Sbjct: 122 DEAHMLSKAASNAFLKTLEEPPEYGVFILCTTEQTALPITILSRCQRYTFKHIDVKDIFN 181 Query: 186 QLEHILNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAMLG 242 ++ I +E + L L+++ A+G++RDA+ + +Q I +G ++ V +LG Sbjct: 182 RINFIATQEGYNPSDKEKILYLISKMADGAVRDAICILEQVI---NGNITDYNEVVKLLG 238 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + ++N +R + LI +A + + E L+ ++ L+ I +++ + + Sbjct: 239 VVSNRTLFELLATLKKSNSKRAIDLIYKALEQ-TDAEKLITNIIALVRAILLIKSNASID 297 Query: 303 GNDMAAIELRMRELART-IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 M+ ++ + + A +++ + ++ + + + +EMT+L+ + Sbjct: 298 LIKMSDEDINIAKSAAQCFETSELFNIIEAFNKVYFDVKNSNFKGVLIEMTVLKLIEDLS 357 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAARQQLQ 420 P + + + Q + + E Q AA Q++ Sbjct: 358 ISVKPINNIDINGLRAEIESELKAKYSNQAQNTDKLKATLEKEIEEKYKRQFQAAIPQIE 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + K+ E + L++ ++ + + + P+ + Sbjct: 418 KNIREKIQKEVEETQNSNFERAEKVKLQKAIDLSKQKLIEECNNLAKNNPSFSSLAQA 475 >UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Tax=Bulleidia extructa W1219 RepID=D2MMY2_9FIRM Length = 547 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 140/485 (28%), Positives = 235/485 (48%), Gaps = 15/485 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q L +K+R + F +V+GQ++++ A+ N ++ ++ HAYLF G RG GKT++ARLLAK Sbjct: 1 MEKQALYQKYRSKKFTEVIGQDYIVQAIQNTVNQNKVGHAYLFCGPRGTGKTTMARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C +G D+IEI+AA+ T V+ RDL+D AP +G + Sbjct: 61 AINCEDSKE-KPCNHCVSCELANKGIHPDIIEINAANETSVDHIRDLIDKAYLAPMQGIY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVH LS + +ALLK LEEPPE+V F+LATTDPQK+ TI+SRC +F + Sbjct: 120 KVYIMDEVHQLSSAASSALLKILEEPPENVIFILATTDPQKMLPTIISRCQRFDFHRVPS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ L H+ N E I E A + LAR A+G +RDALSL DQ A G + + + Sbjct: 180 KQIQDHLLHVSNLEGIQLEEEAAKNLARLADGGMRDALSLLDQCSAYTSGDIKESDIRRI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ ++L+ + N ++ + +GI E L E + ++ I + + + Sbjct: 240 YGLTSVEEKMTLLNLIQTKNYFSIINHSKQYQEQGINLEKFLEEWIEVVKEIVLYVNTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ + L+ R++ ++ E+ ++ Sbjct: 300 REILEI-LTDEEASQISLLFSKQNWMKILDLLIEFREKFKQNKNQTAYFEVLCIQLSQIS 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E+ + P + + A T + TT +V+ Sbjct: 359 PAKEEEKTELV--------ESQEPDPVLLVEEKDQPVLTATTKEIRLTTEEVVG-----L 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +Q + K + A+ +R+ S ++VQ V ++ E R + Sbjct: 406 LIQCNKQDKAKDSETLKTAKIRGTVEDDRITSALEQVQVMAVGEDCVLLVSEGEQLRTRM 465 Query: 481 TTPVM 485 Sbjct: 466 MESDF 470 >UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGK3_9HELI Length = 939 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 159/546 (29%), Positives = 253/546 (46%), Gaps = 34/546 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 LA K+RP+TFA++VGQE V L L +I +AYLFSG RG GKTS AR+LA+ L Sbjct: 43 IALALKYRPKTFAELVGQESVARTLCLALDSKKIANAYLFSGLRGSGKTSSARILARSLQ 102 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE GIT++PCG C NC +G +D+ E+D AS K++D RDL++ +Y P GRFK++ Sbjct: 103 CERGITSSPCGTCANCIAALKGAHLDITELDGASNRKIDDMRDLIEQTKYKPTMGRFKIF 162 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FN+LLKTLEEPP +VKF+LATTDP K+P TILSR F K + + Sbjct: 163 IIDEVHMLTKEAFNSLLKTLEEPPNYVKFILATTDPLKVPATILSRTQHFRFKKIPTTAL 222 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++ L HIL +E+++ + +L +L R GSLRD L+L DQAI ++TQ ++ MLG Sbjct: 223 KNHLAHILQKENVSSDEASLDMLIRNGHGSLRDTLTLLDQAIVFCQNSLNTQKLADMLGA 282 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD +L +A++ + + + G E E +L E+ + + Sbjct: 283 LDPSAFDTLFQALLRKDMQECIKFAKSL--EGYEIEMILDELSLYIKNKML--------- 331 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 E IPP Y + + L D + +T+L+ L Sbjct: 332 -----------EEIPQIPPVLGMRYANIINDSKAMLQLDCDSDFCLLLTILKMLEAQKIR 380 Query: 364 PLP---EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL--PETTSQVLAARQQ 418 + + Q+ A A ++ + Q + A V P ++ + + Sbjct: 381 EIANALKQLESMQTPAQNAQITQLSNDYIATQNSMESKNAMQVDSINPMQSNTSVDSINP 440 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 ++ T K S + +++T + + + A ++ Sbjct: 441 IKDSINPTNTKDS-----INKDSLPQTQTSVNSNLTIESSNKDSITHINTAQDSINPMQY 495 Query: 479 KATTPVMQQKEVVATPKALKKALEH--EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + P K ++ H +P + + + IE ++ Sbjct: 496 NDSVKNSIDSINATIPTNSKDSISHVNSNSPNSTSLDSIQPIEARESKDSITYSITKNTT 555 Query: 537 EQVALN 542 + N Sbjct: 556 QTEISN 561 >UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 Tax=Leptotrichia RepID=C7ND36_LEPBD Length = 524 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 129/355 (36%), Positives = 202/355 (56%), Gaps = 11/355 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQE VL A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFDEIAGQEFVLRAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAK 59 Query: 61 GLNCETGI--TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 G+NC T PCG C+NCREI QG +D+IEIDAAS +++ R+L + + Y P +G Sbjct: 60 GVNCLNSENVTDNPCGECENCREISQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKG 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R K+Y+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ + Sbjct: 120 RKKIYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVISRCQRYDFLPI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 D + I+ L+++ +E I + +L L+ R +EGS RD+ S+ +Q ++ + ++ Sbjct: 180 DKKDIKKLLKNVAEKEKITIDEASLDLIYRKSEGSARDSFSIFEQVVSNFNNEEIDITKT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH------- 290 LG + D + + + N E+++ I++ G+ E L + L Sbjct: 240 QNALGVVPDVILEEFLNLIKDGNKEKLVDFIDKIWEEGLIIETFLKDFSYYLKEQFKKKT 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 +++ L E + E R + I Y+T ++ + + Sbjct: 300 DLSVNFLLDTISAIFFTLNEFKYEEDKRLLGYVLIHELYKTQRKNLRQNNISEEP 354 >UniRef50_B3TCV4 Putative ATPase family associated with various cellular activities (AAA) n=2 Tax=root RepID=B3TCV4_9BACT Length = 555 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 124/422 (29%), Positives = 222/422 (52%), Gaps = 11/422 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y++LA K+RP+ F +++GQ+ ++ L N + RI A++ +G RG GKTS AR+++K Sbjct: 5 TYKILALKYRPKNFKELIGQDIMVETLVNSIKSNRIAQAFMLTGERGTGKTSTARIISKS 64 Query: 62 LNC----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 L C G+ +C +C EI + +D+ E DAASRT V+D R ++D +Y P Sbjct: 65 LTCTGNFLEGVKCKTGEIC-HCEEITNDKHLDVTECDAASRTGVDDVRQIIDAARYKPTT 123 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++K+Y+IDE HMLSR ++NALLKTLEEPP +KF+ TT+P+K+P+TI SRC FHL Sbjct: 124 AKYKIYIIDECHMLSRSAWNALLKTLEEPPNQLKFIFCTTEPKKIPLTIASRCQTFHLHR 183 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---GDGQVST 234 ++ + L+ I E A++L+A+A+ GS+RDA+SL D+A+ + + +V Sbjct: 184 ASIKVLFDHLKKISKIEEGKISDSAIKLIAKASTGSVRDAISLLDRALINQHVSEKEVDE 243 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + MLG D + L L++ + + + ++ + + + G++ +L ++L LL+ I Sbjct: 244 ATMRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMIDEGLDAASLKNDILELLYFILQ 303 Query: 295 VQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + + +++ + + L++Q L E + +G+EM Sbjct: 304 KKNLGDFESDLTISESELEMIDVISKDVRTETLILFWQFTLKALDEDKILTNPLLGLEML 363 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 ++R L MP E + + + + + + + + T Q Sbjct: 364 VIRLLHLKG-MPTYEDLINKSISSQTDEISTQEQVIKKILNEESEITQISKNQIKNTMQT 422 Query: 413 LA 414 Sbjct: 423 KP 424 >UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=Anaplasma RepID=B9KH82_ANAMF Length = 514 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 134/430 (31%), Positives = 218/430 (50%), Gaps = 11/430 (2%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA K+RP++F D+VGQ+ ++ L N ++G + L G GVGKT+ AR+++ LNC Sbjct: 43 LALKYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCV 102 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 G T PCG C C I+ D+IE+DAAS T V+D R LL+N Y P R+KVY+I Sbjct: 103 NGPTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLENSSYLPTSSRYKVYII 162 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS +FNALLKTLE+P EHV+F++ATT+ +K+PVT+ SRC + L L +Q+ Sbjct: 163 DEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFA 222 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I +E I H+ L+L+A A GS+R+AL L +Q+ ++ V A+LG +D Sbjct: 223 HLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIYTKNKIHVSEVRALLGCVD 282 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 +LV+ ++ A+ + + E ++ + +L + +++ + + +S + Sbjct: 283 KHLTENLVKCILLADASSALEVFRELCSQSL-PVPILEGVQLIVYELCVTSVSKGHKFDL 341 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + +R + + +QTL G +E+ A D + EM ++R +P Sbjct: 342 GRELLSTVR----SGSTPFLSRVWQTLTHGLQEVKNADDVQRAGEMMVIRLCYL-SDLPS 396 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 P+ + + + + + PE S+ + Sbjct: 397 PQKIAGL-----LLSKSREGAPMHTVKKKVEGATTYSYGTPELESRTMGGTSGESAGPSQ 451 Query: 426 TKAKKSEPAA 435 A +S P Sbjct: 452 VAASESAPTQ 461 >UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter showae RM3277 RepID=C6RIQ9_9PROT Length = 831 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 151/445 (33%), Positives = 221/445 (49%), Gaps = 25/445 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDENRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSQPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ AV+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSAVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A I + + E ++ E Sbjct: 243 LDPQRIEEILALVMSGDKPAVSAAIAQL--ESYDAEMVIDE------------------- 281 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 282 -ITANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E A T T ++A + + Q L Sbjct: 341 SIDEMIAV---DAREKFTDSQARTADFGGSRAASNAVKSAVQNGAAQGRNLSAQTLAGSA 397 Query: 424 GATKAKKSEPAAATRARPVNNAALE 448 EP T A N A E Sbjct: 398 NLNAKTPQEPGDQTSAAKTPNPAYE 422 >UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa Japonica Group RepID=Q53M12_ORYSJ Length = 1121 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 196/394 (49%), Gaps = 4/394 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP++F ++VGQ V+ +L N + RI AYLF G RG GKTS AR+ + L+ Sbjct: 335 RSLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALS 394 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PCG C C + G ++LIE+DA++R + R L++N+ + R+KV+ Sbjct: 395 CVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKVF 454 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM+S ++A +K L+EP V F+ T DP+ LP ++SRC ++ + I Sbjct: 455 VVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDI 514 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ ++ +++ V+ ++G Sbjct: 515 VCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQ-LSLLGKKITPSLVNDLVGV 573 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + +++ L L+E + A+ + E G++ AL+ ++ GL+ I A Sbjct: 574 VSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPT 633 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 I R A +Q + L K++ + +R LL+ + H Sbjct: 634 CGGEGIGGRNITDAE---LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSE 690 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 + +QS + + + +A Sbjct: 691 MIQSRSSSKQSAKATSEIVMDAVRESSASRTTAH 724 >UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=Mycoplasma penetrans RepID=Q8EUW0_MYCPE Length = 804 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 120/481 (24%), Positives = 235/481 (48%), Gaps = 11/481 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 RK+RP +F +++GQ+ ++ L+N + + HAY+FSG +GVGKTSIA++ +K LN Sbjct: 5 IAFYRKYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFSKVLN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C C+NC I Q + VD++E+DAAS V + R+++D + Y P+ ++KVY Sbjct: 65 CLNLKDGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVLKYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HMLS ++N LK +E+PP+++ F+ ATT+ K P TI+SRC +++ L+ ++ Sbjct: 125 IIDEAHMLSNAAWNTFLKLIEDPPKYLVFIFATTESYKFPPTIISRCQRYNFLKLNNSEL 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 + L+ I +E I E AL +A A+GSLRDA SL DQ + + + + + + G Sbjct: 185 KECLKSIAKKEKIKVEDNALNKIAELADGSLRDACSLIDQLDSYTNSDIKIEDIYNVFGI 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-AL 302 LD ++ ++L++++ +N E+++ INE +GI++ L ++++ LL+ + + + +L Sbjct: 245 LDVNEKINLLKSVWNSNVEQIINKINEYEVKGIDFYQLSIDLINLLYDKLVYERTKNVSL 304 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL---RALAF 359 + + + EL P I + ++ + + + +++ + F Sbjct: 305 LKYLPSEQTNFLEL----QPKFIIKCLEVWQDNLNKIKTSSNPKFYFQLSCFESCKLFEF 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP---LPETTSQVLAAR 416 L ++ + + P E ++ + + Sbjct: 361 EFDTNLTANSYVVKNETELKEQLEQKVKPTKKETVKVELTEKNKPDKLKEEIKAEEIKVK 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + K + E + P+ + + + +++ ++ + E E Sbjct: 421 PSKKEEIVEEKVIEQEKENNSAQEPILDTSNFKQVKLSESMKVVQIKGKPEGKKEVIEPQ 480 Query: 477 R 477 Sbjct: 481 N 481 >UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7E4_GEMAT Length = 598 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 168/654 (25%), Positives = 263/654 (40%), Gaps = 73/654 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP+ FA V Q HV L ++ GR+ H YL G RG GKT++AR+LA Sbjct: 1 MS-LALARKYRPRNFATVAVQNHVANTLKGAIARGRVAHGYLLCGPRGTGKTTLARVLAM 59 Query: 61 GLNCETGIT----ATPCGVCDNCREIEQGR-FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNCE PCG C +C+ I G +D++EIDAAS V+D R+L + YAP Sbjct: 60 ALNCERRGEPELQGEPCGHCGSCQRIWSGSASLDVVEIDAASNRGVDDARELRERAMYAP 119 Query: 116 A-RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV---TILSRCL 171 + R+KVY++DE HML+R ++NALLK LEEPP V F+ ATT+PQK+ ILSR Sbjct: 120 SGDDRYKVYIVDEAHMLTREAWNALLKILEEPPPRVVFVFATTEPQKIAQQAAPILSRLQ 179 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG- 230 +F LK + +IR +L +L EE +A E AL ++ARAA+G LRDALSLTDQ ++ G+ Sbjct: 180 RFDLKRIGPAEIRERLAAVLTEEQVAFEADALGMIARAADGGLRDALSLTDQVLSLGESA 239 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 V+ V LG + DD+ L+L++ + E V A + A G+++ +L + LL Sbjct: 240 AVTADRVQTALGLIPDDEYLALLDMVAERRAVDVFATVQRLADAGVDFVLVLSGLGDLLR 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + + + E + + D+ LL + ++ +E Sbjct: 300 AQLAI-ALGGVPPELPERMRAALDERKQRLAANDLLRMLHALLELEPMYRRSGQPQLLLE 358 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 L+R + L E S P + A Sbjct: 359 TLLVRFALLDRTIELQEVLQGFGSGGREDPPLRRAAHESRVASAHA-----------LPP 407 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A V A + A RP + A+ + Sbjct: 408 APPAVMAPAPAVSSTQAAAQVLAQAVPTPRPATQQVADAAAAAQRADRQAAPRVPTTPPT 467 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 ++ +W+A ++ K +A+++ + TP Sbjct: 468 VEQVLNQWRAVADAIRAKGRGMLAQAVERLVPITITP----------------------- 504 Query: 531 SLPKLVEQVALNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 + + L ++ + A+ + G + Sbjct: 505 ------------------NGGLTLGYDPLDDTFAQAAENSRADVLAAVQGILGGVSAVAF 546 Query: 589 -----VEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 D PA T R ++ + + + + + D EL + Sbjct: 547 KPYTPTISDKPARDT--TVRMTAHDVQRQRTEQIASRSPLLDAAVKALDLELLD 598 >UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XKJ2_9HELI Length = 587 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 133/322 (41%), Positives = 188/322 (58%), Gaps = 5/322 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MEQQALALKYRPMDFDELVGQEAVSRTLSLALDSKRLSHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 L CE+G + PCG C NC +D++E+D AS K++D RDL++ +Y P G Sbjct: 61 ALQCESGPRSKPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIRDLIEQTKYHPNIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+++IDEVHML+R +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K + Sbjct: 121 RFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I L+ IL E I ++ AL +L R+ GSLRD L+L DQAI V+++ + Sbjct: 181 SDRSIFEHLKKILQNEQIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYSSYNVTSEVCA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG ++ + +L E + + + ++ ++ E LL EM L + + + Sbjct: 241 NMLGLINAESLNALFECIFTQDRDSLLKMLEGFFE--YECGMLLDEMSIFLKEKLL-KGN 297 Query: 299 PAALGNDMAAIELRMRELARTI 320 + + R+ A+ + Sbjct: 298 DTRYSSLLIDRFFRIITQAKEL 319 >UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5C50 Length = 468 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 114/291 (39%), Positives = 188/291 (64%), Gaps = 2/291 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP +F +V G++ ++ AL N L ++ AYLF+G RGVGKT+IARL+AK + Sbjct: 2 YITLYRKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSV 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC CGVC+NC ++G F+DL+EIDAAS +++ R L + + Y P++G+ K Sbjct: 62 NCLEPKEDGEACGVCENCTSFQEGSFLDLVEIDAASNRGIDEIRLLKEKINYQPSQGKKK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC ++ K L ++ Sbjct: 122 VYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEPDKILPTIISRCQRYDFKTLSLQ 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + +QL++IL+ E++ E +L+ A+ GS+RDA+S+ ++ I +S + ++S + + Sbjct: 182 DMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLERLIVSSSERKISLEESEKI 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 LG + + +++ + ++ ++E + ++ EA L + + Sbjct: 242 LGMTPIQKMEQFLHCLLQEEKKTILRELDELWFQSVDMEAFLKDFAKFIKN 292 >UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, scaffold_35.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I8B7_VITVI Length = 1078 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 204/442 (46%), Gaps = 22/442 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP F +++GQ V+ +L N +S GRI YLF G RG GKTS AR+ LN Sbjct: 319 RSLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALN 378 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--APARGRFK 121 C PCG+C C + G+ EID ++ ++ R LL + + +K Sbjct: 379 CLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYK 438 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ A LK LEEPP V F+ T D + +P T+LSRC ++ + Sbjct: 439 VFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEG 498 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I ++E++ E AL+L+A A+GSLRDA ++ DQ ++ +++T V+ ++ Sbjct: 499 DIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQ-LSLLGKRITTSLVNDLV 557 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+E + ++ + E G++ L+ ++ L+ I Sbjct: 558 GVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVD 617 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + R A ++ + L K+L + +R TLL+ Sbjct: 618 AQQSDSFFGGRSLTEAE---MDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQL----- 669 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP-----------TVPLPETTS 410 P P+P + S + T P+ +Q P + +P++ Sbjct: 670 GSPSPDPTLSGSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAE 729 Query: 411 QVLAARQQLQRVQGATKAKKSE 432 + + L + + + + S Sbjct: 730 KNSTHQGDLFQFRNSGASASSH 751 >UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter rectus RM3267 RepID=B9D4Q0_WOLRE Length = 906 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 236/481 (49%), Gaps = 29/481 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDESRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSRPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ V+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSVVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A + + + E ++ E Sbjct: 243 LDPQRIEEILALVMSGDKSAVSAAVAQL--ESYDAEMVIDE------------------- 281 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 282 -ITANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPE---PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + E + + A A + ++ +A P T Q+ A+ Sbjct: 341 SIDEMIAVDAREKFADSQARAADFSASRAASNFTGGRSEAARFRAPAQTGQISASADGSN 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 S+ AA N + + L + P + + AK + ++A Sbjct: 401 LTGVNAAKLASQNGAALEQ----NLSAQTLTGSANLSAQTPQEPGGQTSAAKTQNPAYEA 456 Query: 481 T 481 Sbjct: 457 F 457 >UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and tau n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3190A Length = 724 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 135/383 (35%), Positives = 197/383 (51%), Gaps = 10/383 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R+ RP+TF+DVVGQ HV+ L N + ++HHAYLF G+RG GKTS+A++LA LNC Sbjct: 6 SLYRRHRPRTFSDVVGQTHVVRTLRNAVERDKVHHAYLFVGSRGTGKTSMAKILAACLNC 65 Query: 65 ETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 E G T PCGVC +C I +D+IE+DAAS V+D R+L D V YAP GR+KVY Sbjct: 66 ERGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSGRYKVY 125 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HMLS ++NA LKTLEEPP H F+LATT+ K+ T++ RC +F +VE+I Sbjct: 126 ILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCHRFDFTRPNVEEI 185 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-------QVSTQA 236 L + ++E IA +A+ L+AR A GS RDAL +Q G ++S + Sbjct: 186 AGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAEISVED 245 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V A+LG D + ++A+ + + + G + L+ E+ + VQ Sbjct: 246 VLAVLGVADAEALFGALDAVSAHDARAALLAVARLVDAGRDAGGLVRELEAHARELLAVQ 305 Query: 297 LSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + A + R+ A + D+ L L R+ +E+ L+ Sbjct: 306 VLGEVPAELRLTPERDARLAAQAAQLGRQDVVRLLDLLSDALDALANGAQARIQLELALV 365 Query: 355 RALAFHPRMPLPEPEVPRQSFAP 377 +A A Sbjct: 366 KAAAPEVDPSTRALLARIDRLEQ 388 >UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicobacter pylori RepID=B9Y2E6_HELPY Length = 558 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 137/420 (32%), Positives = 210/420 (50%), Gaps = 26/420 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITEGKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ A E E++L EM+ L + SP Sbjct: 242 IDRSVLEDFFQSLINQDEVRLKE--RYAILENYETESVLEEMMLFLKAKLL---SPD--- 293 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + LL+ F + Sbjct: 294 ---------------SYSILLIERFFKIIMSSLSLLKEGANASFVL--LLLKM-KFKEAL 335 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 L + A Q P+ P+ A + E + + + Sbjct: 336 KLKALDDAILELEQSKENAFQPLNQNANAPKQEPKSAEKIEKLEKIESAETPQTPMLSAK 395 >UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Tax=Mesoplasma florum RepID=Q6F0D9_MESFL Length = 631 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 111/396 (28%), Positives = 199/396 (50%), Gaps = 5/396 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP F D+ G ++V+ L N L +I H++LF+G RG GKTSIAR+LAK +N Sbjct: 5 KALYRKYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C VC++C + R D+IE+DAAS V++ R++ +N+ P G++K+Y Sbjct: 65 CLNIKDGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNNINSLPFIGKYKIY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP H F+LATT+ K+P TILSRC F+ K +D + Sbjct: 125 IIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISL 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++L I E + L+ +A +EGSLRDA ++ +Q + ++ + + ++ Sbjct: 185 MNRLSFICENEGYKIDKAVLEEIAIISEGSLRDASNVIEQLMTVTSDHITVEDLKSVFYV 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + ++ ++ + ++ +A +G++++ + ++ ++ I + + Sbjct: 245 ATKNEKMKILTNILNNDPATIINYFEKANNQGMDFDVFTLSLIEIVKEIIEFKFTNDENV 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 ++ + E A+ + + L + + L+ L Sbjct: 305 LNILDKSD-LNEFAQ-VNVKSLFEVADNLSEAYAKTKGTN---INFNYLLISLLKTLKEP 359 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + ++ V P Q +Q Sbjct: 360 TEHKIKIEESVLTIQENIIVKEVIAEPVHIQEPEKQ 395 >UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fusobacterium RepID=Q7P6U1_FUSNV Length = 490 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 176/296 (59%), Gaps = 2/296 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP +F++V G+ ++ +L L + HAYLFSG RGVGKT+IARL+AKG+ Sbjct: 8 HITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV 67 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C NC+ I +GRF DLIEIDAAS +++ R L + + Y P G K Sbjct: 68 NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLKK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HML++ +FNALLKTLEEPP HV F+LATT+ +K+ TI+SRC ++ K LD++ Sbjct: 128 VYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDFKPLDLK 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 240 +++ LEHIL EE+++ ++ + GS+RD++S+ ++ I + +G ++ + Sbjct: 188 EMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAEDT 247 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 LG + + ++ N ++ + A + E ++ + + Sbjct: 248 LGITPSSRIKIFLNKILNENEYDIINELENLANESFDIELFFKDLAKYCKNAIVKK 303 >UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=Q2QW40_ORYSJ Length = 1174 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 103/361 (28%), Positives = 189/361 (52%), Gaps = 8/361 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F+++VGQ V +L+N ++ +I AYLF G RG GKTS AR+ + GL+ Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PCG+C C + G +LIE+DA++R + ++LL+N+ + R+K++ Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM+S ++A +K L+EP V F+ T DP LP ++SRC ++ + I Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ ++ +++ V+ ++G Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQ-LSLLGKKITPSLVNDLVGV 638 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM--VQLSPAA 301 + +++ L L+E + ++ + E GI+ AL+ ++ GL+ I +L+ + Sbjct: 639 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADST 698 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + +Q + L K++ + +R LL+ H Sbjct: 699 ANDMAVGGRSLTDG-----ELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHS 753 Query: 362 R 362 Sbjct: 754 S 754 >UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9W0_THEAS Length = 580 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 153/449 (34%), Positives = 218/449 (48%), Gaps = 24/449 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP F+++ GQ V+ AL L GRI HA+LFSG RG GKTS ARLLAK L Sbjct: 2 YLSLYRKYRPSRFSEISGQRGVVEALVGSLRSGRIPHAFLFSGPRGCGKTSAARLLAKRL 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC + CG C NC I++G +D++EID AS +E+ R L D V AP + K Sbjct: 62 NCASPAEDGESCGTCVNCEAIQRGGHLDVVEIDGASNRGIEEIRSLKDQVALAPFQAPNK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML+ +FNALLKTLEEPP V F+LATT+PQK+PVTI SRC+ F + + E Sbjct: 122 VYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRSRCVHFPFQRISTE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ H++ E I E +AL LAR+A+G+LRDALSL +QAI+ G G V+T A+ +L Sbjct: 182 DIKDRISHVVQMEGIEAEDQALWELARSADGALRDALSLLEQAISVGGGMVTTAAMEGIL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + V + E + + + G E + + L + V Sbjct: 242 GGFSRESLQRWVRQLRE-DPPGAFQGLAQIVRGGSNLERISEGLFLLFRDLLFVGRWGEG 300 Query: 302 LGN---DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + ++ + A + + L EL P R G +R+ Sbjct: 301 VLSALGISSSEGAFLLSEAPNWDLGVL----EVLCATLSELM--PRTRQG-----MRSDV 349 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F + ++ + ++ P A + A T P +Q Q Sbjct: 350 FVGLLQCGIDGALGRAG------SSPPASRAPKAGHEAHRSAMTAPQTVVVAQTEGKPGQ 403 Query: 419 LQRVQGATKAK--KSEPAAATRARPVNNA 445 + SEP+ A P Sbjct: 404 IDPSIAVEDKPDTPSEPSLAGSETPKGRP 432 >UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 Tax=Helicobacter RepID=Q9ZLC5_HELPJ Length = 582 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 140/429 (32%), Positives = 215/429 (50%), Gaps = 32/429 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+TG A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CKTGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ A E E +L EM+ L + SP Sbjct: 242 IDRSVLEDFFQSLINQDEARLQE--RYAILENYETEGVLEEMMLFLKAKLL---SPD--- 293 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + LL+ Sbjct: 294 ---------------SYSILLIERFFKIIMSSLSLLKEGANASFVL--LLLKM------- 329 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 E + + Q P +AP+Q P + L R++++ Q Sbjct: 330 KFKEALKLKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGREKLEKRERIETPQ 389 Query: 424 GATKAKKSE 432 + K Sbjct: 390 TPMLSAKDR 398 >UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oenococcus oeni RepID=Q04E50_OENOB Length = 594 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 144/515 (27%), Positives = 253/515 (49%), Gaps = 20/515 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L R++RP+TF+D+VGQ + L N L ++ HAYLF+G RG GKTS+A++ A+ + Sbjct: 2 YKALYRQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 P + ++ F D+IEIDAAS V++ R+L D YAP +FK+ Sbjct: 62 ------EGIP-------EDTDRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKI 108 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP VKF+LATT+PQK+P TILSR +F +DV+Q Sbjct: 109 YIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQ 168 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 I +LE +L+++ IA++P AL+++A A++G LRDALS+ DQA+A + G+V V + Sbjct: 169 IVKRLEFVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAVAITKTGRVELDDVFKIT 228 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DQ + ++ +E + I++ G + ++L LL + +++++P Sbjct: 229 GTSPIDQQIGFLQHALEKQTAKAFKDIHKLLLDGKDPIRFAEDLLVLLKNLMLIKIAPE- 287 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ L++ + + + ++ + +E+ ++ + Sbjct: 288 --LVSENAFNQIENLSKEFSNSVFEQAIDDVSDNLMKMKQTTRPELYLEILAVKIAS--R 343 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV-PLPETTSQVLAARQQLQ 420 + + + Q+ +P + V SA A P+ + ++ Sbjct: 344 LKKVDQKAIQAQTPSPAKTEMSSSAVLVNSNASSAESMASDFDNHPQAQVDIAEKNEKSN 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ +T+ S+ + + + V + + + + P + Sbjct: 404 QMPESTEKPASQNEEPLESPSLAKTDDDSAWQVMEAAVKSELQAVKDAWPDIVADFDESV 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 + V A+ K L + H + E AA+ Sbjct: 464 AMLAENSEPVAASQKGLIISFNHPELAEAAARTPH 498 >UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR Length = 1241 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 10/392 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K++P F++++GQ V+ +L N +S GRI YLF G RG GKTS AR+ A LN Sbjct: 468 RSLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASALN 527 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA--RGRFK 121 C + PCG C C + G+ DL E+D + ++ R LL + P R+K Sbjct: 528 CMSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPLGSSRYK 587 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V+LIDE H+L + A LK LEEPP+ V F+ TTDP +P T+ SRC ++ + Sbjct: 588 VFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFSKIKDR 647 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I NEE++ E AL L+A A+GSLRDA ++ DQ ++ +++T V+ ++ Sbjct: 648 DIVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQ-LSLLGKKITTSLVNELV 706 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+E + + + + GI+ L+ ++ L+ I + Sbjct: 707 GDVSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGTYNVVY 766 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + I + A ++ + L K+L + DR TLL+ Sbjct: 767 AKHGDSLIGTQNLTEAE---LERLKHALRLLSEAEKQLRISSDRSTWFTATLLQL----G 819 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP 393 P + + S + T P+ V + Sbjct: 820 STPSMDLTLSSSSRRQSSRTTEEDPSSVSKES 851 >UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Y2_THELT Length = 465 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 182/350 (52%), Gaps = 18/350 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F ++ Q L N L +I HAY+FSG RG GKTS+AR+LAK LN Sbjct: 2 EALYRKYRPKNFDQIIDQLQAKLVLQNALLKNKISHAYIFSGPRGTGKTSVARILAKALN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C++C I++G D+IE+DAAS +++ R + D V + P K+Y Sbjct: 62 CSNRKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+R +FNALLKTLEEPPE V F+LATT+ +++P TI+SRC + + I Sbjct: 122 IIDEFHMLTREAFNALLKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIEFRNFSEDAI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLG 242 + + + E I A +++AR A G +RDALS +Q DGQ ++ Q V LG Sbjct: 182 LENIRKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANYADGQVITPQVVEKALG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL----------------VEML 286 + D+ ++A+ + V L++E G++ + LL +++ Sbjct: 242 LVPDEIVQRYIKAIRNGLVKEVGELVDEVHRSGLDVDQLLQSSIEIIEEEISRNPSRDLI 301 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIG 335 + + ++ N A +L LA P I+ Y+ Sbjct: 302 SIGENLVLILRELKYSENRKAICKLLSMNLASKFESPEKIEHDYEIKNKS 351 >UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4_PHYPA Length = 1473 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 135/596 (22%), Positives = 260/596 (43%), Gaps = 18/596 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 +++ +++K+RP++F D+VGQ V+ +L ++ G++ YLF+G RG GKT+ AR+ A Sbjct: 686 FTHRSMSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAA 745 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 L C PCG+C C + R D+ EID ++ ++ R LL + GR Sbjct: 746 ALVCLNTEPHRRPCGLCRECATMTLNRSRDVKEIDVSTCPDLDHMRLLL---NLPSSNGR 802 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +V++++ L+ + A LK L++PP +V F+L TT+ ++LP++ SRC ++H L Sbjct: 803 QQVFILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLK 862 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +I +L+ + +EH+ + AL L+A AEGSLRDA + DQ ++ D ++ V Sbjct: 863 ESEIMTRLQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQ-LSLLDQTITLAMVQE 921 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G + +++ ++L++ + A+ + + E G++ +L+ ++ L+ I Sbjct: 922 LSGLIPEEKLINLLDMALAADTVNTVKGMRELLDAGVDALSLVAQLASLIANIL---AGA 978 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + R + R ++ + L K+L + DR + LL+ Sbjct: 979 IDLRRETRKKGFFYRNMPRREEQQRLRQALKVLAECEKQLRASNDRPTWLTAALLQFAPD 1038 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +P + +P A T +VPP P+ +P P+ S+ ++R+ Sbjct: 1039 RSYLPSSVD-----TSMAPSPIAFDTFERVPPGEPCTPR----LPPPQPASESRSSRKHS 1089 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q+V + S+P R + + + S + A + + Sbjct: 1090 QQVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQAD 1149 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 T+ V+ P + + + + + + QL L + Sbjct: 1150 DTSLRSASSLVLFDPSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQL-LSSQGTLM 1208 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 AL+ ++E+ + RS + A M G VEL + + P+ Sbjct: 1209 ALSVARDETFAVAHVEFRSPGHKARAERLRSSTCHAFQMALGCPVELKLSLECPPS 1264 >UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VVC8_9CYAN Length = 379 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 117/369 (31%), Positives = 194/369 (52%), Gaps = 13/369 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQ K+RPQ +++VGQ ++ L N L G + + +LF G RG GKTS AR+ AK Sbjct: 6 SYQPWHLKYRPQNLSELVGQPLIVRTLTNELKTGNLPNVFLFDGPRGTGKTSTARIFAKS 65 Query: 62 LNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + T TPCG C +CR I G +D+ E+DAAS V+D R+L++ + + R Sbjct: 66 LNCLSSSQPTLTPCGTCLSCRSICSGSNLDVRELDAASNNGVDDIRELINYSKLS-TTNR 124 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++ +DE MLSR + NA LK E+ + F+LATT+ +KL TI+SRC F + L Sbjct: 125 YRIIYLDECQMLSRSAQNAALKLFEDRLPNTIFILATTESEKLLDTIISRCQHFQFRRLS 184 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I +L I E I+ P AL+L+A+ ++G +RD++ L +Q S +G++ V Sbjct: 185 TQDITERLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMSTNGKIEPHHVRD 244 Query: 240 MLGTLDDDQALSLVEAMVE---ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++G++ D + L ++ + +MAL N+ G+E L+ E+L + + + Q Sbjct: 245 VIGSIPADSLVDLCVSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLVFQ 304 Query: 297 LSPAALGNDMAAIELR-------MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 LS + + L++ + +I TL + + + +G+ Sbjct: 305 LSQDTNSLKQGKVPFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQSSNPLIGL 364 Query: 350 EMTLLRALA 358 E+ LL+ Sbjct: 365 EICLLQLAY 373 >UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanothece RepID=B1X2D0_CYAA5 Length = 381 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 110/361 (30%), Positives = 187/361 (51%), Gaps = 4/361 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++Q K+RPQ+ D+ GQ+ V L ++ + A L SG +G GKTS AR++A Sbjct: 18 AFQPWHLKYRPQSINDLTGQDSVQKVLTRLITEDSVPQALLLSGPKGTGKTSTARIIAMS 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G+T TPCG C NC+ I+ G +D++E+DAAS V+D R L+ + YAP R + Sbjct: 78 LNCEKGVTTTPCGECKNCKAIQNGNSLDVVELDAASHNGVDDIRKLVADAGYAPFSARTR 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H LS + NA LKTLEEP H KFLLATT+P K+ T+ SRCL + + Sbjct: 138 VFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQS 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSA 239 ++ +LE I +E ++ + L+ +AR+++G +RD++ L + GD V V Sbjct: 198 EVAQRLEDIAKKEGVSIDDSCLEAIARSSKGGMRDSIQLLFEVFCHKEGDEPVKVDKVYE 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQL 297 + L+ Q L+ A+ + + ++ N ++ + +L + ++ Sbjct: 258 VTKELNPTQVEFLLSAVAQGDSYNLVRCCNAIEESALDINKVFDALLTAWTDVMAVVLGA 317 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +P + + L++ + T + + + L + + + + + TLL + Sbjct: 318 NPKQIAKTSILGTENLETLSQKLDLTMLTVGLEKLDQAERRIATSSNSSRWLLATLLSLV 377 Query: 358 A 358 Sbjct: 378 N 378 >UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 Tax=Neorickettsia RepID=C6V4Y0_NEORI Length = 403 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 119/398 (29%), Positives = 197/398 (49%), Gaps = 23/398 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LA K+RP+ ++VGQ+ ++ L+ ++ + A L SG G GKT+ AR + Sbjct: 8 MGYIGLANKYRPRLLNEIVGQDFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTL 67 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C + PC CD+C + G D++EIDAAS T VED R L++ Y P ++ Sbjct: 68 SLLCSNRMDVLPCLKCDSCLSVLNGSHPDVLEIDAASNTGVEDVRMLIEGALYKPLLSKY 127 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDEVHMLS+ +FNALLK LEEPP+HVKF LATT+ QK+P TI+SRC + L L Sbjct: 128 KSYIIDEVHMLSQSAFNALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 187 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 I +L + E I A++ +A A+GSLRDALSL +Q +G+++ + Sbjct: 188 FVITERLTQVAEREQIEIAQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVDVLRN 247 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +G D + L+++++ + + + +N+ ++G E + +E++ L+ Sbjct: 248 KMGLADLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGHEMLTIFMELVALI---------- 297 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I+ ++ + Q +L +E+ E+ ++R ++ Sbjct: 298 ------NEKIQDKLTARDDSKS-GFFCRLAQCMLSSIEEIKSFNCDHNVAELAVIRM-SY 349 Query: 360 HPRMPLPEPEVPRQSFA----PVAPTAVMTPTQVPPQP 393 +P P + S P + + + Sbjct: 350 IADLPSPGEIIKIFSNEVCTTPPSNSEISKNNSTNSAE 387 >UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=Mycoplasma mycoides group RepID=Q2STA6_MYCCT Length = 669 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 194/352 (55%), Gaps = 2/352 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L R +RP+ F V G + L + RI+HA LFSG RG GKTS+AR+ AK +N Sbjct: 6 QSLYRAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTVN 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C + C C+NC+ + + +D+IEIDAAS V++ R++ ++V P ++KVY Sbjct: 66 CLNLTGSKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIREIKNSVSTLPINSKYKVY 125 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP + F+LATT+ K+P TILSRC F+ +D + Sbjct: 126 IIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFTKIDKNSL 185 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +++L++I+N+E+ E L + +EGSLRDA+++ +Q + + D ++ + + ++ Sbjct: 186 KNRLQYIVNQENYQIEKEVLDEIFYLSEGSLRDAINILEQLMLATDDLITIKNLKSIFLI 245 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + L ++ + N +++ +A +G+ W+ + ++ +L I +L+ Sbjct: 246 ATKQEQLQVIHQSLNNNTNFIISYFQKANDQGMNWDVFALGLIEILKEIIEYKLTNNIEF 305 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ + + I + L L + A + ++LL+ Sbjct: 306 LNILEEDEA--KQFINIDVNHLFLLSDNLAEAYFKTKAANISFNYLLLSLLK 355 >UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomonadales RepID=Q2NBW3_ERYLH Length = 521 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 150/395 (37%), Positives = 217/395 (54%), Gaps = 10/395 (2%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGVCDN 78 ++ LAN + R+ HA+L +G RGVGKTS ARL+AK LNC + G T PCG C+ Sbjct: 1 MVRTLANAIERDRLAHAFLMTGVRGVGKTSTARLIAKSLNCIGPDGQGGPTIDPCGQCEP 60 Query: 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 C I +GR +D+IE+DAAS T V+D R++++ V+YA RFK+Y+IDEVHMLSR++FNA Sbjct: 61 CTAIAEGRHIDVIEMDAASHTGVDDVREIIEAVRYAAVSARFKIYIIDEVHMLSRNAFNA 120 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP HVKFL ATT+ KLPVT+LSR +F L+ + + ++ + +E + Sbjct: 121 LLKTLEEPPAHVKFLFATTEVDKLPVTVLSRTQRFDLRRIPADLLQKHFGWVCEQEQVEA 180 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLGTLDDDQALSLVE 254 E AL ++A AAEGS+RD LS+ DQAIA DG+V+ V MLG D + Sbjct: 181 EDEALAMIAAAAEGSVRDGLSILDQAIAHADLDADGKVTATRVRDMLGLADKGAQRRMFG 240 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++E + + ++A I + + G+E AL+ + L HRI + QL + G + + Sbjct: 241 TILEGDAKALLAAIEDQYSLGVEPLALVRSQMELAHRITLAQLGGSLPGAVSEEEQAALT 300 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQS 374 + + +Q LL +E+ APD + +M LLR L +P P V Sbjct: 301 AWGEQLSQGQLHRLWQLLLKAYEEVKTAPDPLVSAQMGLLRLLH-ASELPDPGKLVKTLE 359 Query: 375 FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 P P + P +P + Sbjct: 360 ILTANPPVQSPAPPPSDDPAATPTGEAGAEVPAPS 394 >UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana RepID=Q9M9R7_ARATH Length = 1071 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 12/391 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L++K++P F +++GQ V+ +L N + GR+ H YLF G RG GKTS AR+L+ Sbjct: 420 SIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAA 479 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARG- 118 LNC+ PCG C C + G+ DL+E+DA + E R LL + AP Sbjct: 480 LNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQ 539 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV++IDE H+L ++ +LLK LE P + F+ TTD +P TI SRC ++ + Sbjct: 540 RYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKV 599 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I +L I ++E++ E +AL L+A A+GSLRDA ++ +Q ++ +++ V+ Sbjct: 600 RDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQ-LSLMGKRITVDLVN 658 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQ 296 ++G + DD+ L L+E + ++ + E G + ++ ++ L+ I + Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYK 718 Query: 297 LSPAALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ ++ + L K+L + DR TLL Sbjct: 719 ALDEKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL 778 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 + MP P S + + Sbjct: 779 QL----GSMPSPGTTHTGSSRRQSSRATEES 805 >UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X phytoplasma RepID=Q83VB4_9MOLU Length = 579 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK RP+ F +VGQE V+ L N + L +IHH YL SG +GVGKT++A++LAK Sbjct: 1 MSYLVLYRKHRPKNFDGMVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C+ C + Q +D+IEID AS V++ R+L D VQY P ++ Sbjct: 61 AINCQNPQGQDCCNECEFCLVVHQKANLDVIEIDGASYNGVDEIRELKDTVQYKPHLLKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+LS ++FNALLK LEEPP +V F+L T++ K+P TILSR FHL L Sbjct: 121 KVYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I+ +L I+ EE I AL +A ++GS+RDAL+L D+ + + + + M Sbjct: 181 EEIKTKLNPIVEEEKILITDEALTTIAAYSDGSMRDALNLLDKISSYKINLIEKKDIEKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E +V+ + +++A + ++ L +++ ++ + ++ Sbjct: 241 LGVISESKINQLAEYLVQPDINQMIAFLELILKPNVQISPFLDDLIDFFQKLLLEHVT-- 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L R + + +++ LLI ++ + + P ++ + + ++ Sbjct: 299 --------NPQENTNLFRLLTNSKRNEFFEILLILKQNIIHFPTKKNSLILNFIKIHNL 349 >UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and tau n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYE9_DEIDV Length = 762 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 145/515 (28%), Positives = 222/515 (43%), Gaps = 40/515 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + ++ RP + +VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MS--AIYQRARPIRWDEVVGQEHVKDVLRAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC +G PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-SGPLPKPCGECESCLSVRAGSHPDVLEIDAASNNSVDDVRDLREKVSLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSRCQHYRFRRLTA 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + +E + EP ALQL+ R A+G++RD SL ++ +A+G V+ AV Sbjct: 178 EEIAGKLSGLAAKEGVRAEPDALQLIGRLADGAMRDGESLLERMLAAGT-AVTRVAVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V + + + G ++ ++ L Sbjct: 237 LGLPPGERVRGIAGALVLGDAGSALQGAAQLYRDGFAARTVVEGLVSAL---------GT 287 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL ++ R+ + L + D++ Sbjct: 288 ALHAELGLSGERL----EGADVPRLLKLQAALDEQEARFARSADQQ-------------- 329 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A P SAP L + +++ + L+ Sbjct: 330 ---------SLELALTHALLAADSGGAGSERAPASAPAAGIPADLVQRLNRLEKELRSLR 380 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + P A A R + Q P + + + R + Sbjct: 381 AAGVTIPSAPTAPVADFDPVARRGPAPVREVAAQALGQVAPAAAPAAVQGSWADVVRQAS 440 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 K + +L ++ AK A Sbjct: 441 MQLKAFLKPARMHAQPGYVSLSYDDKNAFHAKQIA 475 >UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN5_MYCGA Length = 624 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 214/451 (47%), Gaps = 9/451 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +K+RP + ++GQ H+ L + ++ AY+F G+RG+GKTSI+++LAK N Sbjct: 25 INFYQKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYN 84 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C C C I + + D+ E+DAA+ V++ R ++D + YAP KVY Sbjct: 85 CLNKKDGDVCNQCSACELINENKSQDIYELDAATNNGVDEIRKIIDAINYAPMNLSKKVY 144 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HMLS ++NALLKTLEEPP+HV F+ ATT+ K+P+T++SRC F+ K LD + + Sbjct: 145 ILDEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKLDKDDL 204 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L++++ +E I E A+ +A A GS RD LS+ Q + +++ + ++ G Sbjct: 205 VDVLKNVVKQEKIKIEDSAIDKIADFASGSARDGLSILQQLAYDKNKKITVEKINETFGL 264 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + L +E + + + E+ + L+NE A+G + + ++L +L + + Q ++ Sbjct: 265 INLEIKLEFLELINQHDLEKFVKLLNEIEAKGTNFVLFIQDLLAILIDLLVYQKVKSSSL 324 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + E + I + LL R + E LL + + Sbjct: 325 LKVLDEEQVKAINLKNIKLLSLSEKINGLLSTR------VSQTNIKESLLLAVFDYLEQN 378 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 P P V + V T Q+ + ++ PQ + + + + Sbjct: 379 PQP---VVGNNVEVVIKPKTKTTEQIQEKEEAKPQVEIKQKNENEKVVKVEQPNEQLKAK 435 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVT 454 E ++T++ + L + Sbjct: 436 KVRSLPSEETESSTKSTTNDQLDLSLDPTKA 466 >UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR Length = 1190 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 114/588 (19%), Positives = 225/588 (38%), Gaps = 50/588 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +++ P+TF D+VGQ AL+N ++ Y+F G G GKTS AR+ ++ L Sbjct: 451 HQNLTQRYMPRTFRDLVGQNLAAQALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRAL 510 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC++ PCG C++C + G+ ++ E+ S + DLLDN+ + +++V Sbjct: 511 NCQSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRV 570 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L+ ++A+ K ++ P V F+L + LP I+SRC +F L Sbjct: 571 FIFDDCDTLAPDCWSAISKVIDRAPRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDAD 630 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G Sbjct: 631 IIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-KISVPLVQELVG 689 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 690 LISDEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYDF 746 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + R ++ +TL K+L + D+ + LL+ Sbjct: 747 TKERPRRKFFRRNPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL------ 800 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 P Q P + + + + Sbjct: 801 --------------------------APDQQYLLPSSSTETSFNHSPLALNNMGGRDIAR 834 Query: 423 QGATKAKKSEPAAATR-ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 +G + + + N A+ + + ++ A A +W + Sbjct: 835 KGGERVEMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTSV 894 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 + + E E+ K+ ++ L ++ L Sbjct: 895 QTSDAVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREF-------------LYQEGKL 941 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + + V L S L + + +A + GS V + I Sbjct: 942 ISVSFGAAPTVQLIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIR 989 >UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma pneumoniae RepID=DPO3X_MYCPN Length = 681 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 135/508 (26%), Positives = 225/508 (44%), Gaps = 11/508 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL +K+RP F+D VGQ+ + + N ++ ++ H Y+F+G RG GKT+ A+++AK +N Sbjct: 3 KVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAIN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C C+ C+ I +D+ EIDAAS+ + D R+L +NV P + + KVY Sbjct: 63 CLN-WNGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HML+ S++ LLKTLEE P++V F+ ATT+ K+P+TILSRC F K + + I Sbjct: 122 ILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLG 242 + +L + +E I AL LA A+GSLRD LSL DQ + + +S V Sbjct: 182 QQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFN 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD +Q +EA++ + ++ LI+ ++GI + L E+ L + + Sbjct: 242 LLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDLYGYVKTGQIA 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLI----GRKELPYAPDRRMGVEMTLLRALA 358 + + + P L Q + G +L + + V + A++ Sbjct: 302 VVKPSDQTMAAKL---RFHPKQYALLVQAIEANTGYGPSQLSLSDQIKAIV-IHYNNAVS 357 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P +P P V QS A + P P P + P+ +S V Sbjct: 358 KEPHIPAYTPVVQTQSPAKEHVPSKTVEEAKPQLPAKEPVLYKVIEEPKVSSFVKDPVAS 417 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP-AKKEAYR 477 Q T + T + + V + P + + Sbjct: 418 KLIEQPQTIVQPEAQQEITEVEQPTETSPAPATDLFGLAIKPEVVRKRGRRPLSVENTDF 477 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEK 505 ++ + Q P L + ++ Sbjct: 478 FQPAVKKLIQPVSKPAPIKLIEPSDNNP 505 >UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1M4_ACIFD Length = 635 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 162/618 (26%), Positives = 251/618 (40%), Gaps = 54/618 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RP+ F +V GQE V L ++ G + HAYLFSG RG GKTS AR+LA L Sbjct: 5 YQSLYRRFRPRRFGEVRGQERVTETLRRAVAEGHVSHAYLFSGPRGTGKTSTARILAMAL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C + +G D+ E+DAAS + V+ R + V AP GR++V Sbjct: 65 NCEAPVDGEPCLACASCEAVVRGSSADVEELDAASNSGVDSIRWITQTVAAAPV-GRWRV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS+ + NALLKTLEEPP HV F+LATT+P K+ T+ SR F + LD Sbjct: 124 YIVDEVHMLSQAASNALLKTLEEPPAHVVFILATTNPAKVLATVRSRTQHFAFRLLDDAS 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + + +L + AL + R GS RD LS+ +Q +A G G Sbjct: 184 VDALVAEVLEALGASLSDEALAYVRRRGGGSARDTLSVLEQVLALG-------------G 230 Query: 243 TLDDDQ--ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 ++D A++L +A+ + + + + ++A GI+ L+ + Sbjct: 231 VVNDAADGAVALAQAIADGDLASAVRIASDAFEGGIDPTELVAD---------------- 274 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +G+ AR + +TL L A D ++ V L ALA Sbjct: 275 TVGDLGRRFVAEALAGARGAELARLSRPLETLGRLGAGLRDALDPQVVVLAGLAEALAPD 334 Query: 361 PRMPLPEPEVPRQS---------FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 R+ E V P PT P + + +P V PET+ Sbjct: 335 ARLSALEARVAALEADLAGAGHMPRPKPPTGEPLPARTTSPEPAGHSASPNVAEPETSQP 394 Query: 412 ---VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 A+R + +Q A + P A+T RP + + A+ Q V Sbjct: 395 ETRERASRAPARGLQDARRGGDEHPGASTEQRPSSLDRVR--AAFARNQQRADVDRGEPS 452 Query: 469 APAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS 528 P + +P A E + A+ A + W V Sbjct: 453 EPVATTPAPHGDDDQPAAAPDAHGSPVPSGLADEATRAAGPASLEARRQRLQARWFDDVM 512 Query: 529 QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS----MLKGSTV 584 P+++ + +A D + + + + LAE ++ Sbjct: 513 A-KAPRVLRPLLAHARLAIRDERIVVAVDN---RTVAERLVPHLAEIVALVGPDEFAEPP 568 Query: 585 ELTIVEDDNPAVRTPLEW 602 E+ + + Sbjct: 569 EIVVDPGSSQTSSRAPAA 586 >UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 Tax=Deinococcus RepID=Q1IWF5_DEIGD Length = 737 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 152/560 (27%), Positives = 232/560 (41%), Gaps = 40/560 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++ RP + VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MS--ALYQRARPINWDQVVGQEHVKDVLKAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TG + PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-TGPSPKPCGECESCLAVRNGSHPDVLEIDAASNNSVDDVRDLREKVGLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRCQHYRFRRLTP 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + E + EP AL L+ R A+G++RD SL ++ +A+G V+ +V Sbjct: 178 EEIAGKLADLAEREGVRAEPEALNLIGRLADGAMRDGESLLERMLAAGT-AVTRVSVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V+ + + E G ++ ++ +L Sbjct: 237 LGLPPSERVRGIAAALVQGDAGMALTGAAELYRAGFAARTIVEGLVAACAEALHAELGLE 296 Query: 301 ALGNDMAAIELRMRELARTIPPT-DIQLYYQTLLIGR----------------------- 336 G + A + +R A L + Sbjct: 297 GAGLEGADVPRLLRLQAALDEQEARFARSADLLSLELALTHALLAADAGGGGGMVGAAAP 356 Query: 337 ----KELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 ++ + R+ E+ LR P P + P Sbjct: 357 ASLPADVAQRLN-RLEKEVASLRMSGTRPAPANEVPAFEPGKRRGGPAGEAPARAETPAP 415 Query: 393 PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS 452 +A Q + + + Q+ A + Q+ R + +++ Sbjct: 416 MPAAVQGSWDDVVKAASMQLKAFIKTAQKHSEPGYVSL---TYEARWKFHARQVMDKWDE 472 Query: 453 VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPK----ALKKALEHEKTPE 508 ++ V P LE P + + + + P + TPE Sbjct: 473 LSAHVLKVFGPVTLEVIPPEGQGRKAQLGGRGPDGGGGGPAPAVPFGTAAPLAQSRPTPE 532 Query: 509 LAAKLAAEAIERDPWAAQVS 528 + A A A Sbjct: 533 IPAFEPAARSRASRGPAFAP 552 >UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057E1_BUCCC Length = 368 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 229/363 (63%), Gaps = 4/363 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y++L+ KWRPQ F ++G ++ + + N L+ +IH ++L SG GVGKT+IAR+LAK Sbjct: 1 MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GIT+ PC C NC +E+G+F+D IE+DAAS+TKV+D + +LD +YAP GRF Sbjct: 61 CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLK LEEPP++++ +ATT+ K+P TI+SRCL L + + Sbjct: 121 KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQAVS 238 I + L+ I +E+I + AL++++ ++GS+R+AL+ + +S ++ + + Sbjct: 181 HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM--VQ 296 +LG LD L L ++ + ++ ++N A GI++ ++ ++ H+I++ + Sbjct: 241 KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN 300 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N ++ + ++ L++ I D+Q Y + LL G+ L +P ++G E+ L + Sbjct: 301 QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI 360 Query: 357 LAF 359 + Sbjct: 361 FQY 363 >UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma genitalium RepID=DPO3X_MYCGE Length = 597 Score = 364 bits (934), Expect = 7e-99, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 174/332 (52%), Gaps = 10/332 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +QV +K+RP F +GQE + L N ++ ++ + Y+FSG RG GKT+ A+++AK + Sbjct: 2 HQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC C CD C+ I +D++EIDAAS+ + D R+L++NV P + KV Sbjct: 62 NCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HML+ S+ LLKTLEE P +V F+ TT+ K+P+TILSRC F K + + Sbjct: 122 YILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 I +L I +E I E AL +A ++GSLRD LSL DQ D ++S V Sbjct: 182 ILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTF 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL---------LHRI 292 +D + + ++A++ + + L+++ + G+ + L E+ L L I Sbjct: 242 NIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNI 301 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 ++ + + + + L + I Sbjct: 302 NVLDSTEKTMIETLNFEKQHYAFLIKAIEENT 333 >UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I3J8_POPTR Length = 965 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 95/359 (26%), Positives = 173/359 (48%), Gaps = 6/359 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP++F ++VGQ V+ +L +S GRI YLF G RG GKTS +R+ A LN Sbjct: 292 RSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAAALN 351 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C + PCGVC C GR D+ E+D+ + + R L+ N P RFKV+ Sbjct: 352 CLSRE-YKPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKNASMPPISSRFKVF 410 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE H+L ++ +L +LE ++V F++ T + LP + +SR ++H + I Sbjct: 411 IVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDADI 470 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L +I EE + + AL +A + GSLRDA + DQ ++ +++ ++G Sbjct: 471 AGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQ-LSLLGKRITMSLAHELIGV 529 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + DD+ L++ + ++ + E I+ L+ ++ L+ + + Sbjct: 530 VSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVL----AGKCQD 585 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 N R+ A + + L K+L + ++ + + LL+ + Sbjct: 586 NSSEVRRKFSRKHASEGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEAS 644 >UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IBG9_VITVI Length = 919 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 103/420 (24%), Positives = 191/420 (45%), Gaps = 7/420 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF +VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L Sbjct: 267 HQNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARAL 326 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C + G+ ++ E+ S E +LLDNV + +++V Sbjct: 327 NCPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRV 386 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ LS ++A+ K ++ P + F+L ++ LP I+SRC +F L Sbjct: 387 FIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDAD 446 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I +E + + AL+L+A ++GSLRDA +Q G +S V ++G Sbjct: 447 IIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 505 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + E G+E AL+ ++ ++ I + + Sbjct: 506 LISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDIL----AGSYD 561 Query: 303 GNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 R A ++ +TL K+L + D+ + LL+ Sbjct: 562 FTKERLRRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 621 Query: 362 -RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P + R+ A + + + +Q P E L +++Q Sbjct: 622 YMLPSSSADTNRKKHAGSGMARQQSSAHSADTNRLSGKQIPGKVRKEIEEIWLEVLEKIQ 681 >UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=Q75K66_ORYSJ Length = 1023 Score = 357 bits (916), Expect = 8e-97, Method: Composition-based stats. Identities = 114/554 (20%), Positives = 208/554 (37%), Gaps = 21/554 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF D++GQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 353 HQSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKAL 412 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ L+EI ++ D+LDNV +P + +V Sbjct: 413 NCHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRV 472 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++D+ + L +++ + K +E P V F+L + + LP I+SRC +F L Sbjct: 473 FIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECD 531 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 532 IVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISMSLVQELVG 590 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G+E AL+ ++ ++ I A Sbjct: 591 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDIL---AGTYAF 647 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++ +TL K+L + D+ + LL+ Sbjct: 648 TQERVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLA----- 702 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA-ARQQLQR 421 P + +P S + ++T + +A P + Sbjct: 703 -PDKQYVLPSSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLPRNANLGVDSDNN 761 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + G + K P N + + A + Sbjct: 762 MAGTRRGKGPAPTVQLMFSSRVNKSKAERSREQVLHAFES---------VLASAITLEIR 812 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 P + L + + +L +V Sbjct: 813 YEPKDDARAGHVPAISPYPEDSTSNVALRRSFTRHSSASSRGENLIRRLQKDNVVHGANS 872 Query: 542 NAWKEESDNAVCLH 555 N + + L Sbjct: 873 NQTRWVQSDPHILT 886 >UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 Tax=Arabidopsis thaliana RepID=Q9SN33_ARATH Length = 1057 Score = 357 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 101/425 (23%), Positives = 180/425 (42%), Gaps = 24/425 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+ P+TF D++GQ V+ AL+N ++ ++ Y+F G G GKTS AR+ A+ L Sbjct: 430 HQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARAL 489 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C +C + G+ ++ E+ E DLLD ++ +V Sbjct: 490 NCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP-RV 548 Query: 123 YLIDEVHMLSRHSFNALLKTLEE-PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 ++ D+ LS +NAL K ++ P HV F+L + LP I+SRC +F L Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM- 240 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V + Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELV 667 Query: 241 -------------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +G + D++ + L++ + A+ + + +E AL+ ++ Sbjct: 668 SIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLAT 727 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 ++ I D + R+ ++ +TL K+L + D+ Sbjct: 728 VITDIL---AGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLT 784 Query: 348 GVEMTLLRAL----AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 + LL+ R + S + P++ + + Sbjct: 785 WLTAALLQLAPDQNYLLQRSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNR 844 Query: 404 PLPET 408 P E Sbjct: 845 PAVEE 849 >UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Tax=Thermaceae RepID=Q72HA7_THET2 Length = 529 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 187/373 (50%), Gaps = 20/373 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF +VVGQEHV L + GR+ AYLFSG RGVGKT+ ARLLA Sbjct: 1 MS--ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C+ PCGVC +C+ +++G D++EIDAAS VED R+L + + AP Sbjct: 59 AVGCQ--GEDPPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HMLS+ +FNALLKTLEEPP HV F+ ATT+P+++P TILSR F + L Sbjct: 117 KVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTE 176 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L IL E AL LLAR A+G+LRDA SL ++ + +G ++ + V Sbjct: 177 EEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLERFLLL-EGPLTRKEVERA 235 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + ++ + L G +L+ +L + A Sbjct: 236 LGLPPREALAEIAASLARGKTAEALGLARRLYGEGYAPRSLVSGLLEVFREGLYAAFGLA 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 P + L + L D + +E+ LL A Sbjct: 296 GTPLPAP--------------PQALIAAMTALDEAMERLARRSDA-LSLEVALLEAGRAL 340 Query: 361 PRMPLPEPEVPRQ 373 LP+P Sbjct: 341 AAEALPQPTGAPP 353 >UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSU9_9BACT Length = 454 Score = 354 bits (908), Expect = 7e-96, Method: Composition-based stats. Identities = 119/291 (40%), Positives = 165/291 (56%), Gaps = 16/291 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R +T +VVGQ+H+ L L RI HA+LF+G RG GKTSIAR+LA Sbjct: 1 MS-QALYRKYRSRTLDEVVGQKHITDVLLKALQHKRIGHAFLFTGPRGTGKTSIARILAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N P +D++EIDAAS +++D RDL + V AP F Sbjct: 60 AIN------DLPYE--------NDSLHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAPF 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ SFNALLKTLEEPP HV F+LATT+ KLP TI+SR +FH + + Sbjct: 106 KVYIIDEVHMLTGESFNALLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVSA 239 ++ L HI +E+I + AL+L+A EGS RD++SL DQ +GD V+ + + + Sbjct: 166 AEVAKHLSHIAEQENIKIDEDALELIAEHGEGSFRDSISLLDQLGSVAGDEHVTAKMIES 225 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 LG + L+E + L++ G L+ ++L L Sbjct: 226 TLGLAPRARVEKLIELTEAHDIGGATKLLDNLEKVGTSPTVLVNQLLKALR 276 >UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabidopsis thaliana RepID=Q9FK71_ARATH Length = 900 Score = 354 bits (908), Expect = 8e-96, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 175/394 (44%), Gaps = 13/394 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q +K+ P+TF D++GQ V+ AL+N ++ R+ Y+F G G GKTS AR+ A+ L Sbjct: 342 HQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARAL 401 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCGVC +C + G+ + E+ E +LLD + + V Sbjct: 402 NCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFE---NLLDKTNIRQQQKQQLV 458 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + D+ +S +N L K ++ P V F+L + LP I+SRC +F L Sbjct: 459 LIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVD 518 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V M+G Sbjct: 519 IIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTR-ISVPLVQEMVG 577 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDIL---AGSYDF 634 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 D + R+ ++ +TL K+L + D+ + LL+ Sbjct: 635 TKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLA----- 689 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P + +P S A + P A Sbjct: 690 -PDKQYLLPHSSSADASFNHTPLTDSDPSNHVVA 722 >UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau subunits n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A1 Length = 489 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 130/442 (29%), Positives = 212/442 (47%), Gaps = 56/442 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R ++ +++VGQ+HV + L L ++ HAYL +G RG GKTS+AR+LA Sbjct: 1 MS-QALYRKYRSKSLSEIVGQDHVTSLLDRALESNKVAHAYLLTGPRGTGKTSVARILA- 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 IT P + + +D+IEIDAAS V++ RDL + AP + + Sbjct: 59 -----HKITGLPYDI--------EDNNLDIIEIDAASNNGVDNVRDLREKALVAPIKSQK 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLK +EEPPEHV F+LATTD K+P TI+SR +++ + +D Sbjct: 106 KVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQRYNFRLIDE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQAVS 238 + L I EE I + AL L+A GSLRD++SL DQ S +G+++ V Sbjct: 166 STVADHLAFIAKEESIKIDTDALNLIAERGGGSLRDSISLLDQIQHTESKNGEITRSDVE 225 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 A LG D+ ++ EA++ + +++ + + RGI ++ ++ + R Sbjct: 226 ASLGLATKDEINAIGEAILSGDALKIITAVRQPELRGIGAVSVADQLYNWIQRNL----- 280 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + Y++ L+ +K + + + + +L+ Sbjct: 281 ---------------------ESYPYLVTYFEDLIKVQK----SHRPDVAILVAVLK--- 312 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F +MP P Q + P + + + T PE T+++L + Sbjct: 313 FTVKMPEP------QIIQHPSTQERHKPDSLSMSSKITEEPIATAKPPEKTTKILDTESK 366 Query: 419 LQRVQGATKAKKSEPAAATRAR 440 ++K + Sbjct: 367 QNEDNSDVASQKDVQQKDQNKK 388 >UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=4 Tax=rosids RepID=D1H1L3_VITVI Length = 875 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 5/361 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L++K+RP+ F ++VGQ V +L +S GRI YLF G RG GKTS +R+ A Sbjct: 151 SPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAA 210 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG+C C GR D EID + R L+ + P RFK Sbjct: 211 LNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFK 270 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ +L +L++ P+HV F++ T KLP + +SR ++H + Sbjct: 271 VFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDA 330 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I EE + + AL +A + GSLRDA + DQ ++ +++ ++ Sbjct: 331 DIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQ-LSLLGKRITMSMTYELI 389 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + DD+ L L++ + ++ + E I+ L+ ++ L+ I + Sbjct: 390 GIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQEGT 449 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L K+L + ++ + + LL+ + Sbjct: 450 ----SEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQLSSVES 505 Query: 362 R 362 Sbjct: 506 S 506 >UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidopsis thaliana RepID=Q9SB72_ARATH Length = 815 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 101/402 (25%), Positives = 188/402 (46%), Gaps = 10/402 (2%) Query: 2 SYQVLAR----KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 S++VL+R K+RP++F ++VGQE V+ L + + GRI YLF G RG GKTS +++ Sbjct: 233 SHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKI 292 Query: 58 LAKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A LNC + + PCG+C C+ GR D++E D+ + R L+ + P Sbjct: 293 FAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPV 352 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 RFKV++IDE +L + ++ LL +L+ +H F+L T++ +KLP +LSR ++H Sbjct: 353 SSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFS 412 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + I +L I EE I + A+ +A ++GSLRDA + DQ ++ +++T Sbjct: 413 KVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQ-LSLLGKRITTSL 471 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++G + DD+ L L++ + ++ + E I+ L+ ++ ++ I Sbjct: 472 AYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII--- 528 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + A + ++ + L K L + ++ + + LL+ Sbjct: 529 -AGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQL 587 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 + Q V ++ + A + Sbjct: 588 SNTDSSSFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEK 629 >UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J8L4_BLASP Length = 574 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 106/528 (20%), Positives = 209/528 (39%), Gaps = 37/528 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 SY V + K+RP + DV+GQ V T L N + R+ LF G RGVGK + AR+LA Sbjct: 5 FSYIVWSLKYRPVRWEDVIGQMDVTTILRNSIEKNRLSQILLFLGPRGVGKNTCARILAS 64 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L F ++ EI VE + + +++ P G++ Sbjct: 65 EL----------------------DSFSNVFEISGFLNHSVESICETIRKIRFYPKEGKY 102 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +I++ + S+ SFN +LKTLEEPP HV F+ T+ K+ +I+SRC + + + + Sbjct: 103 KILIINDFNFFSQDSFNIILKTLEEPPTHVLFIFCATEKNKI-NSIISRCQVYEFRFISL 161 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L+ I +E I + AL L+++ GSL +AL+ ++ ++S + V Sbjct: 162 RDIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFYDQRKISRELVMEK 221 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD +++ +++ +++ L+++ G+ + + + + + +P Sbjct: 222 LGILDTSYYFKIIDYLLDQKISQILILLDKIFQFGVSSINFISGLTKHFRDLLLSK-NPE 280 Query: 301 ALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA-- 356 L + + +R I + + + KE + R+ +E+ L++ Sbjct: 281 TLFLLKLKKKTIQFYIQQSRKIRSSFLINALRICRQMEKESLTYKNSRLTIEIYLIQLAN 340 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 F + PE ++ P ++ Q + + + PE S Sbjct: 341 CLFSIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDP 400 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 +++ + + K E + + P + ++ EK + Sbjct: 401 EEI-----SIQKKDPEEISIQKKDPEEISIQKKDPEEIS----IQKKDPEEKKKIQYLQE 451 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 W +K +LK + + +E ++ Sbjct: 452 NWIKFIQKFSEKIHPTYLNSLKHEIRFHIYKNKILLVVPPQLENRNFS 499 >UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae RepID=B9F6D9_ORYSJ Length = 1050 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 170/355 (47%), Gaps = 5/355 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L +K+ P+TF DVVGQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 349 HRSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKAL 408 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ ++EI ++ D+LDNV +PA ++V Sbjct: 409 NCHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRV 468 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L +++ + K ++ P V F+L + + LP ILSRC +F L Sbjct: 469 FIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECD 527 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 528 IVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISLSLVQELVG 586 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G++ AL+ ++ ++ I + Sbjct: 587 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRE 646 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + R ++ +TL K+L + D+ + LL+ Sbjct: 647 RLRRKFFK---RPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLA 698 >UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_ANIW141I9 RepID=B3T5E1_9ZZZZ Length = 480 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 175/350 (50%), Gaps = 2/350 (0%) Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 NCREI + R +D++EID AS +++ R+L +N++++P FKVY+IDEVHML+ +FN Sbjct: 6 NCREITESRSMDVLEIDGASNRGIDEIRNLRENIKFSPMNANFKVYIIDEVHMLTTQAFN 65 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALL+TLEEPP H KF++ TTD K+P TI+SRC +F + I ++++IL+EE I Sbjct: 66 ALLRTLEEPPPHGKFIMCTTDIHKMPATIISRCQRFDFNRISSTIISDRMKYILDEEKIK 125 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ +L ++R A+GS+RDALS+ DQ I+ ++ + +S++LG + D +L A+ Sbjct: 126 YDSESLAAISRKADGSMRDALSILDQVISFAGEKIEFEQISSILGLIPYDLYFNLTTAIK 185 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-AALGNDMAAIELRMREL 316 E N E ++ ++ + G E ++ + L + + + + ++ R Sbjct: 186 EKNAESLVQVLKHIRSLGTPLEDVVNGLNQHLRNLLIGTVQGAESSLEVNPDLQERYTAE 245 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFA 376 A+ D+ + Q L A ++ +EM LL+ L + + R Sbjct: 246 AKNWERRDLIRFSQVFSKLEPTLRRAAQPQILLEMNLLKMLEMDQCVSIENMLNNRTQNI 305 Query: 377 PVA-PTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 P + P P + P S Q ++ + Sbjct: 306 PASKPVQYEIPEVIEKMPTSVSSQNIIDDKKVENKSAPIKKEAANPEKKN 355 >UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1 Tax=Sorghum bicolor RepID=C5YTM4_SORBI Length = 1074 Score = 334 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 100/425 (23%), Positives = 180/425 (42%), Gaps = 47/425 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F ++VGQ +L+N ++ RI AYLF G RG GKTS AR+ + LN Sbjct: 409 RSLSQKYRPRAFPEIVGQNIAAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALN 468 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C T PCGVC+ C + G+ +L E+DA++R + + LL+N+ + R+KV+ Sbjct: 469 CLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISIIKHLLENLPPSAPLSRYKVF 528 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM ++A +K L+EP V F+ T DP LP ++SRC ++ + Sbjct: 529 VVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKDIDT 588 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ ++ +++ V+ +L Sbjct: 589 VCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQ-LSLLGKKITPSLVNDLLA- 646 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 L+ ++ +L+ A Sbjct: 647 -------GLIMDIIAG----------------------------------TYKLADVACC 665 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 N A + E +Q + L K++ + +R LL+ H Sbjct: 666 NGSAVGGRSLTE----AELERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSSD 721 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + ++ + + S A + ++ ++ Q + Sbjct: 722 MNQQKCSTQEHHKLTNDAMSEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIA 781 Query: 424 GATKA 428 + Sbjct: 782 SHSSQ 786 >UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF5_ORYSJ Length = 799 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 168/354 (47%), Gaps = 5/354 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L +K+RP+ F+++ GQ V +L++ + G++ YLF G G+GKTS AR+ A Sbjct: 147 SARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAAS 206 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG C+ C I G +IEIDA+ LL N PA FK Sbjct: 207 LNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFK 266 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++D+ + + + ++ +LE P+ F++ T+D KLP + C + +D Sbjct: 267 VLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEA 326 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I E + E AL+L+AR A GS+RDA+ + DQ G ++S ++ Sbjct: 327 EIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLG-KRISKSVTYDLI 385 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+ ++ ++ E + ++ LL ++ L+ I + Sbjct: 386 GDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDIL----AGRH 441 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + ++ + + I ++ + L K+L ++ + LL+ Sbjct: 442 QSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQ 495 >UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MVQ4_RHDSA Length = 370 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 161/282 (57%), Gaps = 2/282 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ K+RPQ F +++GQ L ++ +I AYLF G G GKT++AR++AK Sbjct: 4 NHNPFHLKYRPQNFTNIIGQNSATNYLQLAIAAKKITFAYLFVGQHGSGKTTLARVMAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + TPC VC+NC I GR D EIDAA T +E+ R++++ VQY+P ++K Sbjct: 64 INCTSSKN-TPCNVCENCVNIHLGRSFDFYEIDAAKNTGIENIREIIEKVQYSPIMSKYK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +IDE HMLS ++FN+LLKTLE PP + F+L+TT K+P TI+SRC + + + + Sbjct: 123 VCIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDH 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + + ++ E + + ++ L + +GS RDAL++ + + G+ +++ +++S Sbjct: 183 DLIIGITKVVYNEKLRITNKGIENLIKITKGSFRDALNIVE-LFSVGEKKITAKSLSDKY 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + L+E ++ N V+ +I+ E ++ Sbjct: 242 LIIPIAITNLLIEKVLSLNILEVLTIIDYIQFNNWNEEDVID 283 >UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MFK9_9FIRM Length = 335 Score = 317 bits (812), Expect = 9e-85, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 143/346 (41%), Gaps = 26/346 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++F +VVG + ++ + G+I HAYL +G G GK ++A+ AK L CE Sbjct: 7 KSFDNVVGHKKIIQHFEEAIQTGQISHAYLLNGEDGSGKMTLAKAFAKALLCEK---HEG 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR+ + G DLI I +V++ R + + + P +K+Y++D+ Sbjct: 64 CGQCTPCRQADTGNHPDLIYITHEKYEIRVDEIRQGINETIDIKPYSSNYKIYIVDDADR 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + NALLKTLEEPPE+ LL T + +L TILSRC+ L + +QIR L Sbjct: 124 MNVGAQNALLKTLEEPPEYAVILLLTNNKDRLLETILSRCVCMSLGTVPEDQIRDYL--- 180 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 +EH + + + G+L A+ + + MLG + + Sbjct: 181 --KEHTQADEDMIDFAVSFSLGNLGKAVHVAETKEFHE----MLNEALGMLGYIHHIELH 234 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + + L M + +++ + + Sbjct: 235 EMISYL------------KTLTKYKEQIYDFLDIMTDWYRDMLILKTTGSVNLLIFKDKY 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +++E I + + R L + + +EM LL Sbjct: 283 RQLKEQEIYITFEGLTHIMDEIQKARVRLNANVNFEVTMEMLLLTM 328 >UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CSD7_9FIRM Length = 336 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 25/343 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++G E V+ L N + G++ H+Y+F G +G GK +A A L CE PC Sbjct: 11 FDSIIGHEDVVEHLKNAIETGKVSHSYIFYGDKGAGKKLMASTFAMALQCEKD-GFEPCQ 69 Query: 75 VCDNCREIEQGRFVDLIEI--DAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHML 131 CD+C++ D+I++ + + +++ R L+ +V P +K+Y+I E + Sbjct: 70 TCDSCKKALGKNHPDIIQVTHEKPNSISIDEIRQQLILDVDIKPYNSEYKIYIIPEADKM 129 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKT+EEPP + +L T + L TI SRC++ +K +D ++ L Sbjct: 130 TPQAQNALLKTIEEPPSYAVIILLTENVDGLLPTIQSRCIRLDMKVVDDALVKDYLM--- 186 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 EH+ ++ A A+GS+ A +A S D T+ V +L ++ + Sbjct: 187 --EHLQVPDYQAEVDASYAQGSIGKA----KEAATSEDFAKMTENVLHILKNVNRMEVFE 240 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 LV+A+ E + L M+ + M + + Sbjct: 241 LVDAI------------KEISQDKQNVNDYLDMMMFWFRDVLMFKATREIDNLVFKQEIN 288 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +RE A ++ + L + L + + +E+ L Sbjct: 289 YIREQASERSYEGLEKILEALEKTKTRLRANVNFDLAMELLFL 331 >UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=Clostridium thermocellum RepID=A3DH83_CLOTH Length = 329 Score = 314 bits (804), Expect = 9e-84, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 24/346 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++GQ+ V+ +L + RI HAY+FSG G+GK+++A++ A L C+ Sbjct: 1 MDFNSIIGQKSVVESLKRFIDNNRIGHAYIFSGPEGIGKSTVAKIFASILMCDDAAVDKS 60 Query: 73 CGVCDNCREIEQGRFVD--LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR E D ++E S V++ R+L ++ P + KVYLI E Sbjct: 61 CGNCRSCRLFENRTNPDFGVLETRGLS-IGVDEIRNLQQDICIRPLYSKRKVYLIREAEK 119 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N LLKTLEEPPE+ +LAT++ + L TI SR ++ + ++++ I Sbjct: 120 MTVQAQNCLLKTLEEPPEYAVIILATSNYESLLETIRSRSVRINFAKNTFDEVK---RFI 176 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 ++ E +A A+G + A+ L + + + A + G Sbjct: 177 VSRAGGDFEQ--ADFIAAYADGVIGRAVELMESERFKELREKAIDAAVRLSG-------- 226 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ E ++ + + +++L +L + M + + Sbjct: 227 --------SDFEDMLNISRMFDENKEDVDSILDVILLFYRDLLMAGKFGNEKLLINSDKK 278 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + A + + + R+ + + ++ VE+ L++ Sbjct: 279 DIILKYAGRFSAGKLLNNIEIIEETRRNIKQNANYQLAVEVMLMKL 324 >UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC30A0 Length = 329 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 83/344 (24%), Positives = 150/344 (43%), Gaps = 25/344 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + ++G E++++ L + +S+ +I+HAY+F+G G GK +A+ A+ L CE CG Sbjct: 5 SKIIGHENIISQLISAVSMSKINHAYIFNGPDGSGKNMLAKAFAQALLCEK-QGPEGCGE 63 Query: 76 CDNCREIEQGRFVDLIEIDAASR--TKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLS 132 C C++ E G DLI I + V+D R+ L+ ++Q P G +KVY+IDE L+ Sbjct: 64 CHFCKQTESGSNPDLIYIRHSKENIISVDDIRESLVQDIQIKPYNGLYKVYIIDEAEKLT 123 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKT+EEPPE+ + T + TILSRC+ F+LK L + I L Sbjct: 124 VQAQNALLKTIEEPPEYSVIIFLTNNADIFLQTILSRCIVFNLKPLRDDVITDYLIKT-- 181 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 ++ + A+G L A+ L + +G V AV L Sbjct: 182 ---YKIADYEAKVCSSFAQGILGKAIRLFESEDFNG---VKEAAVR-------------L 222 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 V+ + ++ + + + + + + + +++ Sbjct: 223 VKNIYSYEIYDLIEEVKMISQNKVNINDFIDILEMWYRDVILFKVTKDPNNLIFKDEINY 282 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +R+ A ++ I + + + + +E+ LL Sbjct: 283 IRKSASKSSYEGLENIINGCEIAKSRIKANVNFDLAIELMLLNI 326 >UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZS9_HALOH Length = 326 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 141/345 (40%), Gaps = 25/345 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F +++GQ + L L RI+HAYLF+G GVGK +A A+ +NC + + Sbjct: 1 MGFNEIIGQNGAIKILKEELRDNRINHAYLFNGRDGVGKKLLAFQFARAINCHNKVDDS- 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C C++I+ DL I+ + K++ R+ + Y P + K+Y+ID + Sbjct: 60 CGQCMACKKIDHFNHPDLKLIEPVNNSIKIDQIRNFQKEIVYKPYESKKKIYIIDGADTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLKTLEEPP + +L D KLP TI+SRC Q L + E I+ L Sbjct: 120 TLEAANSLLKTLEEPPHYAVIILLVEDLNKLPSTIISRCQQIQLSNIAREIIKEYLI--- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + L+A A GS+ DAL L + + + + ++ Sbjct: 177 ---NKGIGDKKAHLIATLARGSIGDALKLVE-----------KEDILLI-----REELFD 217 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + + + L + G I Sbjct: 218 FLCNLTHLRAVDIFNKSQQMVDWFQQDLPLFDLISGWFKDIIFYNQGIKDNI-VNYDFID 276 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ AR ++ + + RK + + + +++ LL+ Sbjct: 277 KIEVQARNYRTEELISIIELIGETRKYIKANVRKDLALQVMLLKI 321 >UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=Alkaliphilus RepID=A6TJF9_ALKMQ Length = 329 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 139/344 (40%), Gaps = 22/344 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ HV+ L + + H Y+F G G+GK +A LAK L C TG P Sbjct: 1 MAFENIVGQAHVIKLLKQSIKQNTVGHGYIFEGIEGLGKHLVAFELAKALCC-TGTGDQP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 C C++C+++ D+I I K+ RDL + Q P R KVY+I++ ++ Sbjct: 60 CNQCNSCKKLSHQNHPDVIWITGEGSIKINTIRDLQKDTQQKPYESRKKVYIIEKAEKMT 119 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKTLEEPP +V +L T + L TI SRC + + ++ I+ L L Sbjct: 120 VQAQNALLKTLEEPPSYVTLILLTANSHSLLPTITSRCQIIKFQPVPLDVIQAFLM--LE 177 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + + +L+A + G + AL L + + + + Sbjct: 178 K---NVDLEKAKLMATLSNGVVGKALKLLEDPSFQNQ----------------REGLIQI 218 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + + + + + E +L L + + + + + Sbjct: 219 SKDLFKKDKVAALQKFSFFEDHKESIEEILELYLVWYRDLLVYRDTQNKVLMFNIDQVEE 278 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + I I + ++ + ++ +E+ LL Sbjct: 279 IISQSNRIDLKKISNIISIIENTKENVRRNVQFQLNIEVMLLNI 322 >UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 Tax=Corynebacterium RepID=C8NR93_COREF Length = 704 Score = 308 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 111/517 (21%), Positives = 190/517 (36%), Gaps = 57/517 (11%) Query: 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 +D+ E+DAAS V+D R+L + YAPA R++V++IDE HM++ FNA+LK +EEP Sbjct: 10 NLDVTELDAASHNGVDDMRELREKAHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEP 69 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PEH+ F+ ATT+P K+ TI SR + + L +R LE E + + L+ Sbjct: 70 PEHLIFIFATTEPDKVIGTIRSRTHHYPFRLLTPGAMRGLLERTCRAEGVHVDDAVYPLV 129 Query: 207 ARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 RA GS RD+LS+ DQ +A +G +S ++ +LG D + + A+ + + Sbjct: 130 IRAGGGSPRDSLSILDQLLAGAGPDGLSYESALPLLGVTDFTLIDAAITALATDDKAGMF 189 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR----MRELARTIP 321 A I+ G + ++L L + ++Q P A + + + A Sbjct: 190 ATIDRVIEAGHDPRRFATDLLDRLRDLMILQTVPEAFDLGLVDAPTDRAQVLTDQAAMFS 249 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 ++ + G +L A R+ +E+ +R L + Sbjct: 250 GNELATLASMVNTGLADLRGATSPRLLLEILCVRLL-----------------LSRGQVA 292 Query: 382 AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 V+ P QP +A APT P + A+ + + +P P Sbjct: 293 QVIAPAVGATQPAAAG-TAPTFSGPGGAAAAARAKALAASQSYGQRPEPKKPEPEPVKEP 351 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 A E + PVP + A P ++ K K+ + Sbjct: 352 EPAPAPEPAPEPVKAPEPAPVPEPAPEPEPATPAVPTADLLPTIRSKWAQLRTLVGKENI 411 Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS-- 559 E + + + L + Sbjct: 412 RTEI--------------------------------MLTEAKVLGIRQDTLVLGHSTGAL 439 Query: 560 QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 LN + L L G+ + + V +P+ Sbjct: 440 ANRLNAPEHNEVLVTVLERELGTRLAVECVVGTDPSA 476 >UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J0K7_DESRM Length = 335 Score = 305 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 146/346 (42%), Gaps = 26/346 (7%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++++G + ++ L N + R+ HAYLF G G+GK ++AR A+ L CE C Sbjct: 3 RLSNIIGHQQIIQTLKNAVQKSRVAHAYLFMGPPGIGKQTVARSFAQVLLCEAPQGGDAC 62 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C +CR+ + G DL + + K+E R+L VQY P +G V+++++ ++ Sbjct: 63 GNCKSCRQTDGGNHPDLHLLRPSGVTIKIEQIRELQRQVQYKPYQGIRHVFILEKSETMT 122 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + + N LKTLEEP F+L + P L TILSRC Q ++L +++ L + Sbjct: 123 QEAANCFLKTLEEPGSATVFILLSDQPYGLLPTILSRCQQLQFRSLSNQEVSEGLRVLCQ 182 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLT--DQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + LA A GS+ A+ L + ++AL Sbjct: 183 -----VARDRAEELAPLASGSIGRAIQLAGGEDQWPL------------------REKAL 219 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 LV+ + + + + E + L ML + + + Sbjct: 220 WLVQRFPQMSQYQALQAAEELSNDRSAAVEALEIMLLWFRDLLVYHYTRQKEILINQDKI 279 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + E P+ + + + + ++ L + RM +E+ +L+ Sbjct: 280 DTLLEQENWYAPSKVVEIIEEIKLAKERLMANANTRMALEVMMLKI 325 >UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD26_9BACT Length = 297 Score = 305 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 151/302 (50%), Gaps = 10/302 (3%) Query: 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 G +D++EID AS VE R L ++ QYAP++G++KVY+IDEVHMLS +FNALLK L Sbjct: 2 NGTCMDVLEIDGASNNGVEQVRALREDAQYAPSQGKYKVYIIDEVHMLSTGAFNALLKIL 61 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPPEHVKF+ ATT+ K+ TI+SRC +F LK + + IR +L+ I E I + AL Sbjct: 62 EEPPEHVKFVFATTEAHKVLPTIVSRCQRFDLKPIPEDLIRERLDLICKTEGIEADEAAL 121 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 + +AR A+G +RD+ S+ DQ IA +++ V + G + + L A+ + Sbjct: 122 KAVARLADGGMRDSQSILDQMIAFCGTKITEPDVLQVYGLVSGEHIDELARAIATGDHPH 181 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 ++ L ++ A G ++ LV++ + + + + + + L + Sbjct: 182 LLELSDQFDASGQDFYRALVDLQSRVRQALLEAVRGGG----------KTKSLGEELSTE 231 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAV 383 + +L L + ++ E+ LL+A + + A P Sbjct: 232 SLTRLLDSLRQSESGLKFGLSEKVNFEVALLKASEECRARAIDGLIRELSTIAENLPETA 291 Query: 384 MT 385 Sbjct: 292 DE 293 >UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 Length = 331 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 24/344 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F+D+ G E + L + +S+G++ HAY+ SG G GK IA A+ L CE G PC Sbjct: 3 NFSDIYGYETIKEHLQSAISMGKVSHAYVISGGLGSGKKLIASTFAQTLQCEAG-GVEPC 61 Query: 74 GVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHM 130 GVC +C + D+I + + V+D RD L+ ++Q P +K+Y+IDE Sbjct: 62 GVCHSCVQAAGRNQPDIIWVGHEKPGSIGVDDIRDQLVSDMQIKPYSSPYKIYIIDEADK 121 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LKT+EEPP + +L +P TILSRC+ LK L + + L+ Sbjct: 122 LTVAAQNAMLKTIEEPPAYGIVILLANNPDVFLQTILSRCVVLDLKPLKDDIVIKYLKDH 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + + AR A G + A+++ + + + + Sbjct: 182 YDN----ISDYECKFAARFAAGRIGRAMTMVESTEFAELRR----------------DVM 221 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 +++ + + +M + + + L ML + M + + Sbjct: 222 DVIKNAKDMDSTDIMTSVKRVTNYKLTIDDYLDLMLMWYRDVLMFKSTNDTNLLIFNDQM 281 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ A+T+ +Q ++ + L + + +E+ ++ Sbjct: 282 TLIKSQAQTMSYEGLQDIINSIDRVKVRLQANVNFDLVIELLIM 325 >UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2Q8_DESAS Length = 358 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 149/354 (42%), Gaps = 24/354 (6%) Query: 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 R + F+ ++G + ++ L ++ GR+ HAYLFSG GVGK + A L+ L C+ Sbjct: 22 RSFSMHMFSQIIGHKSLIRGLEQAVATGRVAHAYLFSGQHGVGKKTTALALSASLLCDFN 81 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + CG C +CR++ G DL I D AS K+E RDL +Y + + ++++I Sbjct: 82 RSGDACGKCTSCRQLVNGNHPDLHIISPDGAS-IKIEQIRDLQQKARYKSYQNKHQIFII 140 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D+ ++R + N LK LEEPPE F+L + +P+ L T++SRC K L +E+I Sbjct: 141 DQAEGMTREAANCFLKILEEPPEQTVFILISAEPELLLPTVISRCQPMSFKDLGLEEISS 200 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + L A+ A GS+ ALS + ++ Sbjct: 201 LLIQLS-----GVNQEKAGLAAQMARGSIGRALSYFNDDQQYKLREL------------- 242 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + L ++ + ++ + E + + +L + + + + S Sbjct: 243 ---VIRLSQSTRRSAISLLLQEVEELLGKKVNIFEMLEMLSLWYRDLLIWKSSHNEKLVF 299 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A + + + + +L +RR +++ LL Sbjct: 300 NRDKLDVIDTEAEHYTLEKLVNALEMSEMTKYKLMRNANRRAALDVLLLSLTRL 353 >UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KMD2_9FIRM Length = 331 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 142/334 (42%), Gaps = 25/334 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPC 73 F DVVG ++++ + N ++ + HAY+ +G RG GK +A L A L CE C Sbjct: 4 FKDVVGHKNIIKYIQNAVTADAVSHAYILNGERGSGKKLLANLFAMSLQCENRDEDGDAC 63 Query: 74 GVCDNCREIEQGRFVDLIEI--DAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHM 130 G C +CR+ G D+I I + + V D R + D++ P ++K+Y+I + M Sbjct: 64 GKCRSCRQAAGGNQPDIIRIMHEKPNTIGVGDIRTQVNDDIMIRPYSSKYKIYIIADADM 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLKT+EEPPE+ +L T + + L TI SRC+ L+ + + ++ L Sbjct: 124 MSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMMKLRNIKDQLVKKYLM-- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + + A+G++ A+ L + ++ + V Sbjct: 182 ---EQLEVPDYKADVCVAFAQGNMGKAIMLANSEYF---NEIKEEVVH------------ 223 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + E +M + +E L + + + + + + + Sbjct: 224 -LLRNIDEMTVPDLMEAVKRCMIYKMEISDYLDMIAIWYRDVLIYKATRSVDRVVFSDQM 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 +RE A+ I+ +L + + + Sbjct: 283 KYIRERAKKSSYEGIENILDSLEKAKARMKANVN 316 >UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBQ2_BLASB Length = 501 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/358 (24%), Positives = 171/358 (47%), Gaps = 17/358 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 VLA K++P + +++GQE++ L + R+ F G +GVGK + A +LA LN Sbjct: 9 IVLADKYKPLKWDELIGQENISITLKKAIQENRLSQVLFFFGPKGVGKNTCAHILANELN 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 + ++I ++ EI+ ++ ++D +Y+P RG++ ++ Sbjct: 69 SFSEF-----------KDI----SLNTFEINGFFHNSLKCIHRIIDTSRYSPKRGKYNIF 113 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +I E+H S+ F+ LK +EE H+ F+ T+ + +P ILSRC + ++L V++I Sbjct: 114 IIKEIHKFSKDVFDFFLKFIEEKHPHILFIFCGTEEKIVPEFILSRCQVYEFQSLSVKKI 173 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ I +E+I E AL LL++ EGSL A+ L D+ I+ ++S + LG Sbjct: 174 FFHLKMIAEKENIEIENEALLLLSKHVEGSLSKAIHLFDRFISCDGQKISKYFIMNKLGI 233 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-AL 302 D +V+ +++ N +++ L+++ + I+ L+V + + + S ++ Sbjct: 234 FDVKYYFEIVDYLLDENVNKILILLDKILQKKIDSYNLVVGFTKHFRNLFLSKNSETISI 293 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRALAF 359 I E ++ I + L KE + R+ VE+ L++ F Sbjct: 294 LKFKKEIIQSYIEQSKKISFFFLIHALSIFLRLEKEYRLNNQNLRLTVEIHLIQLAHF 351 >UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D691_PELTS Length = 335 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 23/341 (6%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 ++VG + AL N ++ GR+ HAYLF+G GVGK + A A+ L C CG C Sbjct: 6 EIVGHRQITGALMNAVACGRVAHAYLFAGPAGVGKKTTALAFARALLCPVPEGGDACGTC 65 Query: 77 DNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 CR++E DL ++ + K+E R+L Y P +G K++LI ++ + Sbjct: 66 RQCRQVEHRNHPDLYIVNPSGATIKIEQIRELQHRAPYRPYQGGRKLFLICRAETMTAEA 125 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N LLKTLEEPP +L + PQ L T+LSRC Q K++ + ++ L Sbjct: 126 ANCLLKTLEEPPHDTVLILVSDQPQSLLPTVLSRCQQCFFKSIPLSELSGSLTA-----R 180 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 L A + GS+ AL+ ++A A + Sbjct: 181 HGLAQEEALLAAAMSGGSMGKALAYASGSLAERRNAAGALAGALKTAG------------ 228 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + + E +L ++ + + + + A A +++ Sbjct: 229 -----PLEALEMAGKISEDREEALLILEMLICWFRDLLVYRETEDAALLFNADRAGLVKK 283 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A++ P + + + R ++ R+ +E LR Sbjct: 284 EAQSFQPGRLVEIIEDIEATRNKIEANASTRLALEALFLRL 324 >UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVI5_9BACT Length = 354 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 16/353 (4%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +FA ++GQE VL+ N L R+ HAY+F+G G+GK AR LAK + C++G Sbjct: 8 MSFAKIIGQEQVLSLFKNALKNERLAHAYIFAGQEGIGKMLFARELAKKIFCQSGKIDGA 67 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 C C+ C+ I+ G F D+ + K+E + L + + P + K+ +I++ Sbjct: 68 CDNCNICKRIDAGNFTDIFFLLPEKNHRVIKLEQLKYLQEILFVKPLESKHKIVIIEDAD 127 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLKTLEEPP + LL T + + TI SRC L ++ + + L Sbjct: 128 KMNEEASNCLLKTLEEPPLYAIILLIVTSLESVSETIKSRCQVVRFSPLSLKAMENILTD 187 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + + LA + GSL+ A ++ +A A + + + Sbjct: 188 -----RFQLDKQLAGQLALISGGSLKRA-AMFMEANALEKKHWLAEKLFE----VSLKDN 237 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L+ + ++ + M ++ E + E L L I + + Sbjct: 238 LTFSKELLNEWNIQDMEVLEEKRSHVKELFLLF---LMYYRDILICKAGGEHFLLYYDDW 294 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++++ + + + K L Y + + +E + L Sbjct: 295 KDALIAKSKSMSEKTLFKILERIKTSLKYLDYNANINLLIENMITEILYLQSD 347 >UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G973_9FIRM Length = 349 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 151/362 (41%), Gaps = 43/362 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--------- 65 F D+VG E ++ L N +++ ++ HAY+ +G GK IA A+ L CE Sbjct: 4 FKDIVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFAQTLQCEAVNKKLEEL 63 Query: 66 ----------TGITATPCGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTR-DLLDNVQ 112 TA PC C +C++ D+I + + + V+D R L +++ Sbjct: 64 AGETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHEKPNTISVDDIRTQLNNDIV 123 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 P + K+Y++DE +++ + NALLKT+EEPP + LL TT+ + TILSRC+ Sbjct: 124 IKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTTNAESFLPTILSRCVT 183 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 +LKA+ E+I+ L H + A+G++ A+ L A + ++ Sbjct: 184 LNLKAVPDEKIKKFLMA-----HYQIPDYQADVCVAFAQGNVGKAIQL---AASDDFNEL 235 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 A L L++ + + + + + + + ++ M+ + Sbjct: 236 KASA-------------LQLIKRLHDIDLYEMTEAVKQISEYKLQINDYFDLMMIWYRDV 282 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + G ++ A I+ Q L + L + + +E+ Sbjct: 283 LYYKATKDVNGLIFKDEVYDIKRQAEQSSYNGIEEILQALSKAQVRLNANVNFDLVIELL 342 Query: 353 LL 354 LL Sbjct: 343 LL 344 >UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax=Thermoanaerobacteraceae RepID=B0K122_THEPX Length = 324 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 140/349 (40%), Gaps = 30/349 (8%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 +R + G E VL N +S +I +AYLF G G+GK +A A +NC G T Sbjct: 2 YR------IYGHETVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINC-KGET 54 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 A PC C +C ++ D+ I KV+ R + + + P K+++ID+ Sbjct: 55 AKPCFKCSSCLKVMDKNHPDVFFIKPEENSIKVDTIRYITNEINIRPYEANKKIFIIDQA 114 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + NA LKTLEEPP + F+L + Q+L TI+SRC + I++ L Sbjct: 115 DKMTAAAQNAFLKTLEEPPLYGLFILIASQQQELLPTIVSRCNIVRFNKENRNTIKNYLM 174 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 EH E A ++LA A+G+ A LT+ + + + Q + +L + Sbjct: 175 F----EHDISEKEA-EVLAHIADGNFAQANKLTNNEYLNFRRE-TIQEIEKILTIKGFEV 228 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + E +L +L + + + + + A Sbjct: 229 IEEFEFFDKNKD----------------NIEEILKILLSYMRDLLVFKATKDASFIKNID 272 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 R++E+ + + + ++ + ++ VE L Sbjct: 273 FLNRIQEMESRLTINKLNNIINRIEQFNSQINSNINYQLAVENLFLDMA 321 >UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=Q3A3X2_PELCD Length = 321 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 146/345 (42%), Gaps = 26/345 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ V+G + L +S R+ HAYLF G G+GK +A L K L C G + CG Sbjct: 2 FSRVLGHQRQKDLLEKAVSSKRLPHAYLFEGPEGIGKRLVALALTKILFCANGNS---CG 58 Query: 75 VCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C +++ DL ++ S K+E R L + Y P +KV +ID ++ Sbjct: 59 DCPACHKVDHHNHPDLHQLGPDGSSIKIEQIRALQKELSYRPLEAPYKVSIIDGAEKMNP 118 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEP +L T P + TI SRC + + E +L+ +L Sbjct: 119 AAANALLKTLEEPRSQTLLILLTPAPDAVLPTIRSRCQRLPFSRIPRE----RLQEVLV- 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E + E +LA +EGS + AL D ++ Q +L + Sbjct: 174 EQLNIEDAQAHILATLSEGSFKKAL--------GKDRELYLQRRKELL---------KNL 216 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 A+ + ++ L + A +L + + ++Q + + Sbjct: 217 TALSSGSIIPLLNLAQKFAEEKDLLFDILEIIQAFYRDLLLLQHGRPMDDLVNVDMLETL 276 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++R + + L+ R+ L +R++ +E+ LLR +A Sbjct: 277 QSVSRRENVSSLLGKLDALMTSRRHLERNVNRQLAMEVLLLRLVA 321 >UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YD97_DICT6 Length = 326 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 28/335 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ+ + L ++ ++ YLF G GVGK A + LNC+ Sbjct: 1 MAFKEIVGQKQAIEVLRRAINENKLSQTYLFVGPEGVGKRLTAISFVQALNCKVEP-LEG 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG CD C+ IE+ + DL + + K++ RD+ P +KV+++D+ H L Sbjct: 60 CGECDICKSIEKLSYPDLFYLKPEGQWYKIQQIRDIRKEAYVKPYISNWKVFILDDAHQL 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 NALLK LEEPPEH F+L P+ L TI+SR L +++ ++ Sbjct: 120 RAEGANALLKILEEPPEHTLFILIAYRPELLLPTIISRSQIISFSYLSYDEVWQIIKD-- 177 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L++L ++GS+ AL ++ + + Sbjct: 178 -----KVSEDKLEILVNLSQGSVGKALFWGEENNWTKRIE-----------------LFK 215 Query: 252 LVEAMVEANGERVMALINEAAARGIE--WEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 + + + L++ + LL +L + + +L+ Sbjct: 216 YLTLLKKDRPYSPFELVDFLVEEKDDEKIINLLELVLFWWRDLLLWKLTEDEKYIMQKDF 275 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + A+ +D++ +++ + + + Sbjct: 276 LPEIARKAQEYSVSDLRNFFRLTQDAIRGIRNNAN 310 >UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS16_9FIRM Length = 330 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 75/345 (21%), Positives = 153/345 (44%), Gaps = 25/345 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F +++G E ++ + + LG+I Y+ +G G GK ++ R L K L CE G T PC Sbjct: 4 FTEIIGHEDIIRHFKSSIELGKISQGYIINGETGSGKKTLTRALVKTLQCEEGGT-EPCN 62 Query: 75 VCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLD-NVQYAPARGRFKVYLIDEVHML 131 C +C + E G D+I + D + VE+ RD ++ ++ P R+K+Y+I++ +L Sbjct: 63 HCKSCLQCETGNQPDIIWVTHDKPNVISVEEIRDQVNSDIDIKPYSSRYKIYVIEDAQLL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ NALLKT+EE P + +L T + K+ TI SRC+ ++K + I L + Sbjct: 123 NVNAQNALLKTIEEAPSYAIIILLTNNIDKMLQTIQSRCIVLNVKPVREHDILDYLMN-- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + + A+G+L A+ L ++ + + + Sbjct: 181 ---ELKLDKQKADFCMDFAQGNLGKAIRLA-----------TSDEYREI-----KENVVK 221 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + E + + ++ I ++ + M+ + M+++S Sbjct: 222 IMRHLREMSVDDMLFAIKNMELYKLKISDYIDLMMMWYRDVLMLKVSNNPGRLMFKEYYS 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +R+ + I I+ +++ + L + +E+ LL Sbjct: 282 DIRKQSSHISYEGIEKVLKSMDKAKVRLEANVSFDIAMELMLLTM 326 >UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC81_9FIRM Length = 330 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 146/347 (42%), Gaps = 25/347 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD++GQE + L N L ++ HAY+ SG G GK +A A+ L CE A Sbjct: 1 MRFADIIGQEELKGHLQNALQNQKVSHAYIISGEEGSGKRMLAEAFAQTLLCEEK-GADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR+ D+I + + + V+D R + ++ P +KVY++DE Sbjct: 60 CGHCHHCRQTMSHNQPDIIYLTHEKPATISVDDIRSQINSDIVIRPYNSDYKVYIVDEAE 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + NALLKT+EEPP + LL TT+ Q TI SRC+ K + +R +L Sbjct: 120 KMNEQAQNALLKTIEEPPSYAVILLLTTNAQAFLPTIRSRCILLETKPVPDALVRGELMK 179 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + A+G++ A++L + + Sbjct: 180 -----RYEIPDYQADMSVAFAQGNMGKAIALAQSQEFADRK----------------EMV 218 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E +A I E A+ L ++ + + + + A A Sbjct: 219 LSLIRHISEMTYADRIAWIREMEAKKEPLTDYLDLLMVFYRDVLLYKATGQADRLIFADQ 278 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +++ LA + ++ ++ + R++ + + ++ + R Sbjct: 279 VYQVKRLADGLSYRHLEEIFEGVESCRRKDAANVNTDLILQQLMERM 325 >UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3R5_9FIRM Length = 346 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 147/357 (41%), Gaps = 37/357 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-------- 67 ++GQ H+L N + +G+I HAY+ +G G GK ++A AK L CE Sbjct: 4 ERILGQNHILRHFENAIRMGKISHAYIINGEEGSGKMNLAIHFAKALQCERNNSNKAINE 63 Query: 68 ------ITATPCGVCDNCREIEQGRFVDLIEID-AASRTKVEDTRD-LLDNVQYAPARGR 119 + T CG C +C++ + D+ I S V++ R+ + D++ P Sbjct: 64 DGERITVPGTACGQCKSCKQTDSKNQPDIKYITYEKSGIGVDEIREQINDDIDIKPYSSP 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y++ E ++ + NALLKT+EEPPE+ +L TT+ TILSRC+ +++ + Sbjct: 124 YKIYIVPESEKMTVQAQNALLKTIEEPPEYAIIILLTTNADTFLQTILSRCVMLNIRPVK 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I++QL ++ A + G+ A+ L +++ Sbjct: 184 EDIIKNQLTS-----QYGVGDYEARVAATFSNGNPGKAIKLA-----------TSEEFKE 227 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + + + ++ + + + I + + + M I + + + Sbjct: 228 L-----KQYVVGMFMSLEKGGMDIIGEAIKKTGTFKKQIDEYFSLMRIWFRDILVYKATK 282 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + ++++T DI + + + + + +E+ LL Sbjct: 283 EEDQIIFQDEYMTIEKMSQTYSFDDINDILKAIDLAESRIKSNVNFDSTIEILLLSI 339 >UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=Geobacter RepID=A5G697_GEOUR Length = 320 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 144/347 (41%), Gaps = 31/347 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ ++ L L+ GR+ HAYLF GT GVGK + A L + + C Sbjct: 1 MPFSHILGQNSAISILQRSLATGRLAHAYLFEGTEGVGKKATALALIEAVFC---GKEEG 57 Query: 73 CGVCDNCREIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR+I + DL E D A K++ RDL ++ Y P K +ID Sbjct: 58 CGACPSCRKIAALQHPDLHLVEPDGAF-IKIDQIRDLQKDLAYRPFEAPKKACIIDGAER 116 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + NALLKTLEEPP + +L T + TILSRC + H + L E I L Sbjct: 117 FNQAAGNALLKTLEEPPGNALIILVTAQSSGVLPTILSRCQRLHFQTLPEETIAAYLGRN 176 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + A ++ A A GS++ AL ++ + D Q L Sbjct: 177 ------GIDGEAARIAASLAGGSMKKALEISKE-----------------TTLSDRKQFL 213 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 + + + + E AA + LL + L I +++ G A + Sbjct: 214 ERLIGLSLREITPLFSAAEELAADKDKVMELLELLTSFLRDILLLKGGGE--GIVNADLL 271 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + T I + R L + R+ +E+ +R Sbjct: 272 PILEREAGRLSQTGIMERIGHVAAARHALLRNVNARLTLEVLFMRLA 318 >UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67JB2_SYMTH Length = 332 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 134/337 (39%), Gaps = 24/337 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T++ + GQ + L ++ GR+ HAYLF+G GVGK +A LA+ LNC Sbjct: 1 MTWSAIRGQRMAVDLLRRAVAGGRVAHAYLFAGPAGVGKRLVALELARSLNCLEPRAGEA 60 Query: 73 CGVCDNCREIEQGR--FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C ++ D+ ++ R + E R + + V P GR+KV +ID Sbjct: 61 CGACRSCLKLSAEPPVHPDVTVVEPEGRMIRTEQMRQVQNEVYARPTEGRYKVVIIDGAE 120 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ S N LLK LEEPP + F+L TT+ + TI+SRC H L E I L Sbjct: 121 RMNAESGNRLLKVLEEPPPYACFVLLTTNAAGVLPTIVSRCQIVHFSPLPAEAIAAVL-- 178 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E P +L A + GS+ AL++ D+A Sbjct: 179 ---QEKAGIGPGEARLFASLSGGSVGAALAMAANPEVGRR----------------RDEA 219 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E + ++ E L L +V A Sbjct: 220 LSLLLRLGEMDDADLLEQAAAWEKEKDHLEERLEMAAFWLRDALLVAREAPERLVVNADR 279 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 +R LA + ++L R L + R Sbjct: 280 LPEVRTLAGRYGGEGLVAALESLSRARDALLRNGNAR 316 >UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUA9_SYNAS Length = 329 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 148/346 (42%), Gaps = 24/346 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D++G + L N + R+ HAYLF G GVGK ++A AK LNC G + Sbjct: 6 MSFKDILGHAKPIGILQNAIQHNRMAHAYLFHGMAGVGKLTLALNFAKALNCLQG-ASDA 64 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +C + + D+ I+A + +++ +DL + +++ P G+ +V ++ + L Sbjct: 65 CDCCISCIKTDHRNHPDIEMIEAEGQYIRIDAVKDLQERMKFKPMEGKKRVAILVDADRL 124 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP +L T P +LP+TILSRC Q L E + L Sbjct: 125 NNAAANALLKTLEEPSPANILILVTDRPYQLPITILSRCQQIRFNPLAQEIVTTLL---- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + E LLA A+ GS+ AL L +A + +V ++ + G D Sbjct: 181 -HERFSVENTQAGLLAAASGGSIGKALDLNREAYLTLKNEV----LNFIAGISADSSLHR 235 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L + + + L + + +++ + A G Sbjct: 236 L-------------TFLRFLSDDKRDIMDKLDILRTFFRDVLILRETGRAEGLMHQDRVD 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ A DI + + + L ++ + +E+ + + Sbjct: 283 QITAFAGKRTTGDILTAIRAIDSAERRLIQNTNKSLTLEVMMFKLA 328 >UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PER6_CLOTS Length = 320 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 144/341 (42%), Gaps = 26/341 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G +++L +S +I +AYLF G G GK +A+ A +NC+ G + PC C Sbjct: 4 IYGHKNILALFNKIVSSQKIANAYLFIGESGFGKEFMAKYFAMMINCKNG--SKPCLSCP 61 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +C ++ G D+ I+ KVE R++ ++N P K+++I E ++ + Sbjct: 62 SCIQMISGNHPDIFFIEPDGISIKVETLRNVVINNAYVKPYNSYKKIFIIKEAEKMTEQA 121 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N++LKTLEEPPE+ F+L ++ + L TI+SRC E I L E Sbjct: 122 QNSILKTLEEPPEYGLFILTSSKMEGLLPTIVSRCEIIRFTRESDEVIEDYL----INEK 177 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + + +A A G+ A L D+ + ++ ++ + ++ D+AL L Sbjct: 178 -KIDRSKAKKIASIANGNYGKANLLIDEGYS----RIRSELGDILYNVINQDKALRL--- 229 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 +E + ++ M L + +++L + + ++++ Sbjct: 230 -------ESFKFFDENREM---IDDIIDIMFSYLRDLMILKLLGSEEYIINKDMVDKLKD 279 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + + L + ++ +E LL Sbjct: 280 FSDNLTGFKLNNIINEIGELAFNLKSNVNYQLAIEKFLLNI 320 >UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK6_SYNFM Length = 335 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 140/345 (40%), Gaps = 25/345 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D+ GQE L G + HA LFSG GVGK +AR LAK +NC Sbjct: 1 MSFKDIPGQERTKRLLKRMARAGTLPHAVLFSGMAGVGKLRVARELAKLVNCLEPRDDES 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+I++G DL I + K++ R+L + V++ P GRF+V +I+ L Sbjct: 61 CDRCISCRKIDEGHHPDLFVIRSEGTFIKLDRIRELRERVRFRPFEGRFRVVIIENAQHL 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 S NALLK LEEPP FLL +PQ L TI+SRC L+ L+ E I +L Sbjct: 121 HDESGNALLKVLEEPPRANLFLLTAIEPQMLLPTIVSRCSHLRLQPLEDEVIAGELAA-- 178 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + L R + GSL A L + S ++ Sbjct: 179 ---SLKIPEAQARELTRLSGGSLDRAQWLAREEHLSHWKEIVEN---------------- 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + V+A+ A + + E L + + + + ++ Sbjct: 220 -LRKSERSGTADVLAMAGRWAQQKEDLEQDLECVKLWVRDLLLSRVIDGYRQAFEPDDPC 278 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + P + Y + L ++++ +E L Sbjct: 279 AVCG--GEVSPDSLLTLYDRVEESIGRLRGNANKQLVMESICLNI 321 >UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Tax=Arthrospira RepID=Q84FP3_SPIPL Length = 768 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 152/347 (43%), Gaps = 15/347 (4%) Query: 92 EIDAASRT---KVEDTRDL-LDNVQYAPARGRFKVY----LIDEVHMLSRHSFNALLKTL 143 EIDAA +T VE L +++V L+ HMLS +FNALLKTL Sbjct: 222 EIDAAVKTALQDVESIEKLGVNHVYDIEVEHNHNFVANGLLVHNCHMLSTAAFNALLKTL 281 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP+ V F+LATTDPQ++ TI+SRC +F + + ++ + LE I +E+IA P A+ Sbjct: 282 EEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAMATHLETIAAKENIAITPEAV 341 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 ++A+ A+G LRDA ++ G+++ + V ++G + + ++L+EA+ E Sbjct: 342 MMVAQIAQGGLRDA-ESLLDQLSLLSGEITVERVWDLVGAVPERDLMTLLEAIAEGKATA 400 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AALGNDMAAIELRMRELARTIP 321 ++ E RG + +L + + + + +P L + ++ Sbjct: 401 ILDQTRELLNRGRDPLIVLQNLGEFYRDLLIAKTAPNRQDLVKLTQPTWESLCAFSQRWE 460 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL--AFHPRMPLPEPEVPRQSFAPVA 379 I + L ++ R+ +E+TLL L A P+ + Sbjct: 461 HEIILAGQKHLRDSEVQIKNTTQPRLWLEVTLLGLLPEALRPQTVSTGVVNVQPQPISNQ 520 Query: 380 PTA--VMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 PT+ P PP P QA +VP + + Sbjct: 521 PTSKMRSQPVYKPPAPAQPVSQAVSVPDAPPPPPPPPQPTTANQEEA 567 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 4/137 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQE + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG+C+ CR I G +D +EIDAAS T V+ RDL++ Q++P + Sbjct: 61 SLNCLQTSNPTETPCGICEVCRGITTGATLDFVEIDAASNTGVDHIRDLIERTQFSPVQC 120 Query: 119 RFKVYLIDEVHMLSRHS 135 R+KVY+IDE L+ + Sbjct: 121 RYKVYVIDEC--LTGDA 135 >UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=Clostridium RepID=B8I4J3_CLOCE Length = 322 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 135/340 (39%), Gaps = 25/340 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G + +++AL + + HAY+F G GVGK + A A L C PCG C Sbjct: 1 MLGHQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASMLMC--REDQFPCGECK 58 Query: 78 NCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +C+ + D EI VE+ R++L + P +KV +I++ ++ + Sbjct: 59 SCQLYREASNPDFQEIIQKDKSISVEEIRNILKGLVIRPLYSDYKVIIINDADTMTIQAQ 118 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK+LEEPP +V F+L + TI SRC + L E I +E Sbjct: 119 NALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRILFNRLSHEDIMEIMES-----KY 173 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + A+G AL L + + ++ + + + D Sbjct: 174 GPRQSDWEFIVSYADGVAGTALELAESPHSL---ELREEVLEFTSRLVSDR--------- 221 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 +A+ + + R + +L +L + + + + + + + Sbjct: 222 -DADPFKFYETFEKNNDR---VDYILHVILLYFRDLLIYKETGDTSLLINSDKKDMIIRN 277 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + I Q + R+ L + ++ +E+ L++ Sbjct: 278 VE-LSFSHIIKCIQAVWDARRGLGNNANFQLAIEVMLMKI 316 >UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales RepID=P73507_SYNY3 Length = 1116 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 158/356 (44%), Gaps = 9/356 (2%) Query: 87 FVDLIEIDAASRTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + E+++ ++ +VE DL +++ A G L+ HMLS +FNALLKTLEE Sbjct: 522 HTNFEEVESVTKGQVEKVYDLEVEDNHNFVANG----LLVHNCHMLSTAAFNALLKTLEE 577 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PPE V F+LATTDPQ++ TI+SRC +F + + ++ + L +I E+I + AL L Sbjct: 578 PPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPLQAMVDHLRYIAGRENINIDQPALTL 637 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 +A+ A G LRDA SL DQ ++ ++ V ++G + + L+L+EA+ + E ++ Sbjct: 638 VAQIANGGLRDAESLLDQ-LSLLPDLITPDKVWDLVGAVPEQDLLALLEAIASDDAETLL 696 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA--ALGNDMAAIELRMRELARTIPPT 323 A + RG E +L + + + Q +P L A + + A Sbjct: 697 ATCRQILNRGREPLVVLQNLASFYLNLLIAQTAPQRSDLVAVTAETWQALCDTAPQWQRG 756 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAV 383 I Q L ++ R+ +E+TLL L + P Sbjct: 757 VILQGQQKLKESEIQIRNTTQPRLWLEVTLLGLLPSACGLDTGAVSQTAVRTPVAQPITP 816 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRA 439 P+ V P + V P T V ++++ + EP+ A Sbjct: 817 PKPSNVVTFPGGSHNHLTVVDSP-TMIPVSEPIVLEEKLEADVEPSSFEPSNAHWD 871 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 4/138 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ + L+N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQTAIAATLSNAIEQERIVPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G TATPCG C CR I G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCIAGDRPTATPCGQCATCRAITNGSALDVIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSF 136 R+KVY+IDE L+ S Sbjct: 121 RYKVYVIDEC--LTGDSQ 136 Score = 51.9 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 97/337 (28%), Gaps = 21/337 (6%) Query: 264 VMALINEAAARGI-EWEALLVEMLGLLHRIAM-VQLSPAALGNDMAAIELRMRELARTIP 321 + L+ + A G+ + E+LL ++ LL + ++ + + +A Sbjct: 634 ALTLVAQIANGGLRDAESLLDQL-SLLPDLITPDKVWDLVGAVPEQDLLALLEAIASDDA 692 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 T + Q L GR+ L + L +F+ + + + R V Sbjct: 693 ETLLATCRQILNRGREPL-----------VVLQNLASFYLNLLIAQTAPQRSDLVAVTAE 741 Query: 382 AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 PQ Q L E+ Q+ Q ++ Sbjct: 742 TWQALCDTAPQWQRGVILQGQQKLKESEIQIRNTTQPRLWLEVTLLGLLPSACGLDTGAV 801 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 A +A + V + + PV + P L++ L Sbjct: 802 SQTAVRTPVAQPITPPKPSNVVTFPGGSHNHLTVVDSPTMIPV-------SEPIVLEEKL 854 Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQR 561 E + P A W+ ++ L + + N + + + Q Sbjct: 855 EADVEPSSFEPSNAHWDLTQLWSETLNNLGALSQSLFKSFGSLINLVGNNATVSVTTQQL 914 Query: 562 HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 G + +L AL G +V++ +V T Sbjct: 915 LKIAAGKKDELEAALGQACGQSVKVNLVVGKPSTPET 951 >UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=Dehalococcoides RepID=A5FRS4_DEHSB Length = 343 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 147/350 (42%), Gaps = 32/350 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++GQ+ V++ L+N LS ++ HAY+F G GVGK +A A+ LNC+ PC C Sbjct: 4 IIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQALNCQASPP--PCQECS 61 Query: 78 NCREIEQGRFVDLIEID-----------AASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 C I D+I ++ A + V+ D+ P G++KV++I Sbjct: 62 VCGRILSRNHPDIIHLELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYKVFIIH 121 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + LS S N LLKTLEE F+L T D L T++SRC L+ +++ IR Sbjct: 122 QAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVEINLIREA 181 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L + +LL+ + G + A+ + + + + + + +LG D+ Sbjct: 182 LLK------QGLDAEKAELLSHLSHGRVGWAMEVASSPEILEERKANIEKIIWILGQ-DE 234 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ ++ + AA A+L L + + +++ Sbjct: 235 EERFDYA-----SDLSNLFGQNRTAAE------AILDMWLDVFRDMLLLKADANQNM-TN 282 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + + TDI++ +L L + R+ +E+ +L Sbjct: 283 IDYKDILYMASDKLGLTDIRIAIDNILKTEDRLRANANPRLCLEVLMLSL 332 >UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0DZN9_9CORY Length = 925 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 164/399 (41%), Gaps = 19/399 (4%) Query: 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 +D+ E+DAAS V+D R+L D +APA R+++++IDE HM++ NALLK +EEP Sbjct: 10 NLDVTELDAASHNGVDDMRELRDRAMFAPAESRYRIFIIDEAHMITNQGSNALLKIVEEP 69 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P H+ F+ ATT+P+K+ TI SR + + L + +R LEH + E E L+ Sbjct: 70 PAHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQAMRGLLEHTVAAEDAIIEESVYPLV 129 Query: 207 ARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 RA GS RD LS+ DQ +A +G ++ Q +LG DD + + A+ + + Sbjct: 130 IRAGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLLGVTDDTLIDATIAALATNDRASLF 189 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR----MRELARTIP 321 +++ G+ ++L L + ++Q P A+ + + + + Sbjct: 190 TTVDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDAVNLGLVDAPTDRGEILLQQTQEFD 249 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 I L G L A R+ +E+ + L P APV Sbjct: 250 SQRIPRIAGILNDGLSSLKGATSPRLLLEILCAKML-----------IEPGGQAAPVPAL 298 Query: 382 AVMTPTQVPPQPQSAPQQA---PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 + + P P S P P+ + ++ + V+ + K EP + Sbjct: 299 SAPSARPTPAAPASTPSSKYERPSQRRAREAQEARNVVEKPEVVEAPVETKPQEPEESPE 358 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 R V + + +K A Sbjct: 359 TRSTPPQPASTSVHVQPIDAIKNAWDKIRSTVSKTNAVA 397 >UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ACX9_9CLOT Length = 311 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 132/345 (38%), Gaps = 40/345 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F + GQ L+N + I HAY+F G GVGK ++AR LA L Sbjct: 1 MYFEKIRGQRFAKKYLSNSIKSNMISHAYMFEGPSGVGKNTMARDLATTLLEME------ 54 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D IEI K+ R L ++ P + +K+Y+IDE + Sbjct: 55 ----------NLFNSPDYIEITPDGNSIKIAQIRKLQSDILVKPYKS-YKIYVIDEAQKM 103 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEPP++ +L T + + L TI SRC + + ++ L Sbjct: 104 TVEAQNALLKTLEEPPKYAIIILITNNKESLLDTIKSRCEIIKFTPIPLVEVADYLTQ-- 161 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + LLA + GS++ A+ L++ S D + V Sbjct: 162 ----TGVDKNRASLLANFSRGSMQKAIELSE----SEDFHIMRDEVQ------------K 201 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 VE + + +M + + +L ++ I MV+ + + + Sbjct: 202 YVETFLTGSMLDIMDIQSSIEKYKDNITNVLDLLVNYFRDIMMVKENVDSSMIINLDRLV 261 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ ++ I + + + + +L + + +++ L Sbjct: 262 FIKNMSTKITYSQLSKIIDIIEETKNKLRSNCNFNISIQVMTLNI 306 >UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=A8W216_9BACI Length = 330 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 147/340 (43%), Gaps = 28/340 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L + R+ HAYLF G+RG GK IA+L+AK C+ +A PCG C +CR Sbjct: 12 QPVAAGILKRTIEKNRLAHAYLFEGSRGTGKQEIAKLVAKAFLCQVRESADPCGDCGDCR 71 Query: 81 EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++ G D+ I+ + KVE R L KVYL+ + +++ + N+L Sbjct: 72 RVDSGNHPDVHLIEPDGTTIKVEQIRGLKKEFSMRGMESGRKVYLVQDADLMTASAGNSL 131 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L TT PQ++ TILSR L ++ L + +E Sbjct: 132 LKFLEEPDGEALAILMTTRPQRILKTILSRVQVLSFHPLAPDEFVKTLVNHDVKE----- 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL LL+R +L +ALS+T++ + ++ + L++ +V Sbjct: 187 RDAL-LLSRMTS-NLDEALSMTEEDWIAEA----------------RNKVIQLIDDLVTR 228 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 G +++L ++ + + + M + + E R+++ Sbjct: 229 PGYSLISLQDDWIPFFKEKTDVQLGIDLMTLWYRDVLRTK-VDQMEQIVYVDQEDRLQKQ 287 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A ++ + + + ++ ++ + ++ +E L+R Sbjct: 288 AFSLSEERLARHLEAIVDTKRRIDANTTPQLAMEQMLIRL 327 >UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBV2_THET1 Length = 345 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 146/358 (40%), Gaps = 39/358 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ VG + L L+ + R ++LF+G VGK+++AR A L C + PCG Sbjct: 7 SEFVGNKQALRLLSAAKAKNRASGSWLFTGPPSVGKSTLARWFAALLLCSDETSDYPCGQ 66 Query: 76 CDNCREIEQGRFVDLIEI----------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 C +CR+I G D+ I + ++ R++++ + P KVYLI Sbjct: 67 CIHCRKIYHGSHPDVETISLALQAEQSGKPSREIGIDSIRNIIERIYLRPFEANRKVYLI 126 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ ++ + NA LKTLEEPP+ V +L D LP TI SRC + +L+ + +I Sbjct: 127 EDASTMTEEAANAFLKTLEEPPDFVTIVLIAIDDYSLPETIRSRCYRVNLQPVPHSEITR 186 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + E ++A + G A + A++ ++ Sbjct: 187 YLVN-----SLGFEQEEANMIATLSNGRPGWA--------------IRATHDRALVAQVN 227 Query: 246 DDQALSLVEAMVEANGERVMALINEAA-------ARGIEWEALLVEMLGLLHRIAMVQLS 298 DD + ++++N + E + + +LL +G++ +A ++ Sbjct: 228 DD--WKYLNKILQSNDIERLKSAEEISKDWSNKPNNRDDLYSLLFNWIGIIR-LATIKSF 284 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + ++ P Q +L L + R+ +E L+ Sbjct: 285 QENGSKAYLSENVDLIRFLSSLGPQHGYELIQQILKAIYMLDSNANVRLVLENLFLKL 342 >UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I166_DESAP Length = 338 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 135/348 (38%), Gaps = 25/348 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++GQE + G + HAYLF G GVGK S+AR LA+ L C T + CG+ Sbjct: 3 DGIIGQELAKRYFQRAVEGGCLAHAYLFHGPAGVGKKSLARALAQALVCNTAENNS-CGL 61 Query: 76 CDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C CR G DL +D A + R+L + Y P R + L+ E L+ Sbjct: 62 CPACRMFLAGSHPDLRVLDGAEKSIGIAQVRELQQALVYRPYGARH-LCLVQEAEGLTAE 120 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLKTLEEPP V F+L + P++LP T++SRCL+ + L ++I L E Sbjct: 121 AANALLKTLEEPPGPVLFILTSARPERLPPTVVSRCLKIPFRPLTRDEITSGL------E 174 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + + + L AR A GSL A L + + L + + + Sbjct: 175 TMGFKGDMVPLAARLAGGSLGRAAELAAGGDGLDWREKAANMAEEFLSGIGTAELFARAR 234 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + ++ + + + A ++R Sbjct: 235 EL--GERAEMLVRTEYLLLWYRDLLL--------------WRETGFEGLLINADRLEQVR 278 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 AR + T+ RK+L + R+ E LR Sbjct: 279 VQARLADGPALARSIATIEDTRKKLLANVNVRLAAEGLCLRLAGLAEE 326 >UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TB70_HELMI Length = 340 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 141/360 (39%), Gaps = 27/360 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + GQE + L+ GL R+ HAYLFSG +GVGK + AR A+ + C C C Sbjct: 7 QITGQERAIRQLSRGLLANRVAHAYLFSGPQGVGKKTAARAFAQSVLCLERAGGDACASC 66 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 CR+ + G DL + T K+E R+L ++Y P +V LI++ + S Sbjct: 67 PACRQFQGGSHPDLFSLSPEGTTLKIEQIRNLQKRIRYRPYLSSHQVVLIEQAETMQGPS 126 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLK LEEPP F+L T + TI SRCL + + + +I L +E Sbjct: 127 ANALLKILEEPPGPTVFILITDRGHGILPTIRSRCLPVYFQPVPSGEIARFL-----KEK 181 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + LL A+G A L + + +G + V L D + L E Sbjct: 182 -GVSAGHVSLLTLLADGRWDRAARLAAEGLPAGRE--RARQVLDGLALTGDSRIFQLAEE 238 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + E + + + + A G ++ I + Sbjct: 239 -WDKDKEGIAEFFDYLTLLLRDRLLIA-----------------GAGGAEVPVINGDITG 280 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSF 375 A P + T++ R+ L R+ VE TLL+ PL + + Sbjct: 281 GADRWPLPVLLTALDTVMAARRLLDTNASARLLVEDTLLKLRDLARGEPLTPLTAAKVNL 340 >UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ60_DESPS Length = 338 Score = 264 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 136/346 (39%), Gaps = 24/346 (6%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 R ++ V+GQ+ +A + R+ HAYLF G GVGK AR +A LNC A Sbjct: 7 RFLCYSQVLGQQRAKQIVARAIEADRVPHAYLFKGPDGVGKKLFARGVAAALNCRERQGA 66 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR++ G D + K++ R L ++ + P +V ++++VH Sbjct: 67 FACGHCVSCRKLLSGNHPDYTVVQPDKGAIKIDQVRSLCRDLSFPPYESPVRVVVLEDVH 126 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + R + N+LLKTLEEPP++ +L ++ TI SRC L ++ L+ Sbjct: 127 TMRREAANSLLKTLEEPPQNNVLILTAESSCEILTTISSRCQVVSFYPLTENEVSTALQ- 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E LLAR AEGS L L + +A+L Q Sbjct: 186 --GKELPPLAENEQGLLARLAEGSPGKMLLL---------------STTAVLPVWKKAQK 228 Query: 250 LSLVEAMVEANGE--RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L ++ ++ + E + E A + + ++ + + Sbjct: 229 L-FIDPALQGDAEIGAWLQCAEEIALLKEDMTYFFAILRLMIRDHLLNLSGVQESLCSLT 287 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +L + + K++ Y + + E+ L Sbjct: 288 DWGFSENKL--RWSRPALLQALHYIDTAEKKMVYNCNNTLVCEVLL 331 >UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=B3E2K6_GEOLS Length = 331 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 32/348 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-T 71 + + + GQ+ VL AL ++ R+ HAYLF G G G+ + A L + L C+ + Sbjct: 1 MSLSVIKGQDRVLDALKRSIAANRVAHAYLFEGPDGCGRRTTALALMQALFCKEPLDGGD 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C +CR++ G DL + +E R+L + P + K LI+ Sbjct: 61 ACGNCSSCRKLASGNHPDLHLLSPLPDKRDISIEQIRELQQQLSLRPFEAKRKACLIEPA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ S NALLKTLEEPP H +L +T L TI SRC LD + L Sbjct: 121 ERMNEKSANALLKTLEEPPGHAIIVLLSTQADLLLSTIRSRCQHLRFSPLDDGVVADLL- 179 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 ++ + +P + LA AEGS+ A +L +++ A V Q + +L Q Sbjct: 180 ---IQQGM--DPDKARELAPLAEGSMERASTLEEESDA-----VRRQELLTVLSKASSRQ 229 Query: 249 ALSLVEAM--VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ +A V E ++ N + + + S +G Sbjct: 230 VATIFDAAESVAGGREETLSTFNLLLSLLRDLLLI---------------RSCGQIGIAN 274 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + A P + + L R+ + + ++ +E LL Sbjct: 275 GFLNNELTVEASRFTPAGMMEALERCLETRRAIQGNANPKLALERFLL 322 >UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PXY3_VIBCH Length = 479 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 244/482 (50%), Gaps = 55/482 (11%) Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 +RDALSLTDQAIA G+G V + V+ MLGTLD D AL L++A+ + VM I A Sbjct: 1 MRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQ 60 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G+EW+ LL ++ LHRIAM Q PA L + R+ LA+T+ P D+QLYYQ L Sbjct: 61 NGVEWDGLLQQLSTQLHRIAMYQALPATLDKSLPEAS-RIESLAKTLAPQDVQLYYQIAL 119 Query: 334 IGRKELPYAPDRRMGVEMTLLRALAFHPR---------------------MPLPEPEVPR 372 GR++LP +P R+G+EM +LR +AF P P + V Sbjct: 120 KGRQDLPLSPTARIGIEMLMLRMMAFRPSHVSLASVIVPPNTAVTTPTIATPTSQMAVSA 179 Query: 373 QSFAPVAPTAVMTPTQ-------VPPQPQSAPQQAPTVPLPE-TTSQVLAARQQLQRVQG 424 PVA + V P PP + P VP+ + S + A + Sbjct: 180 PQPQPVAQSNVSQPASQAMPYSVAPPMMAAQPVVESAVPVTQREASHSINAPEVSVVTNT 239 Query: 425 ATKAKKSEPAAA-----------------------TRARPVNNAALERLASVTDRVQARP 461 T+++ S PA A +ALER+A +VQ P Sbjct: 240 DTQSQASMPALAGLRHQLRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSP 299 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + ++ ++E Y+W+ P+ + TP LKKALEHEKTPE+ AKL EA+ +D Sbjct: 300 ERNDEDELEPEEEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMVAKLIEEAVAQD 359 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG 581 W+A V +L K+VEQ+ALN+ + + L LR S HL+N AQQ+L +AL+ + G Sbjct: 360 AWSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLG 419 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 L I TPLE R+ +Y++KL A S+ D N+Q + R F+A+LD +S+R Sbjct: 420 EACSLNITVGQEG--ETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVR 477 Query: 642 PI 643 PI Sbjct: 478 PI 479 >UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHB4_BREBN Length = 326 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 138/348 (39%), Gaps = 31/348 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ Q L++ L R+ HAYL +G +G GK +A LAK L C A Sbjct: 1 MTWTRFSQQPRAQELLSHSLRNERLAHAYLLAGPKGSGKKQMALHLAKSLFCSERE-ADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR I+ G D++ I D AS K++ R L + KVY+I+ V Sbjct: 60 CGACVTCRRIDGGNHPDVLFITPDGAS-IKIDQIRSLQKEMAMRAVESSRKVYIIEHVDK 118 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLK LEEPP V LL T + TILSRC L E I +L Sbjct: 119 MTTQAANSLLKFLEEPPAGVLALLLTEHSHAILPTILSRCQIVQFSPLSAESIAEKLRA- 177 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 L +A+ A + ++A+ + Q + + Sbjct: 178 ---------EGVLAGMAQVAS----HITTNVEEAMTLSQSESFAQL---------RNLVI 215 Query: 251 SLVEAMVEANGERVMAL---INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 LV+ + N ++ + + ++ E L ++ L I +Q+ A + Sbjct: 216 QLVQECKQRNSSALLTIHDMLQKSDKSKEELPLFLDLLILWLRDILYLQVGRHAHL-INS 274 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + ++ A ++ ++ + + + ++ +E +L+ Sbjct: 275 DQQDVLQGQALVWTKAELLRGIDLVMETKNRIERNANAQLALERLVLQ 322 >UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A090_DESOH Length = 332 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 135/352 (38%), Gaps = 38/352 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-------- 72 QE L LA L+ G I HA+LF+G G+GK S A A NC + P Sbjct: 3 QEKPLRTLAGILARGDIPHAFLFTGIDGIGKRSAAMGFAMACNCLAAVQEKPLPVPVPGD 62 Query: 73 -----CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C CR I G D+I I K+ R+L++ V + P + + +I Sbjct: 63 SGLPFCGTCRICRAIAAGTHPDVITIAPEGNAIKIGRIRELIEKVAFRPHEAKMRAVIIS 122 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + ++ + NALLK+LEEPP F L L T++SRC + ++I Sbjct: 123 DAWAMNPEAANALLKSLEEPPPQTLFFLTAEHASDLLPTVVSRCRHIRFAPVSADRIAAF 182 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L ++H + +A + A + GS+ AL+LTD + + ++ + Sbjct: 183 L-----QQHHGVDEKAARSAALMSGGSVARALALTDVPLGAWRQWLAAE----------- 226 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 + A+ V+A + + L + L+ + + P + N Sbjct: 227 ------LAALPSRPVPLVLAFAEKLQKNKDQIGQWLGMIQTCLYDAVVWKYQPGRIMNI- 279 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + L+ + ++ K L + R+ E L Sbjct: 280 -DMTDAVAALSEQESIASLGRKIDAVVAMEKALNRNLNPRLATEKLALELAN 330 >UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0463 Length = 323 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 142/340 (41%), Gaps = 27/340 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 D++G + + + + +I H+Y+F G +GVGK S+A +AK L CE I CG C Sbjct: 2 DIIGHQKIKDYFKKVIKINKISHSYIFEGNKGVGKKSLAAEIAKILLCEDAIDEIACGKC 61 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ ++ D I+I+ ++ K+E ++ LL V P +G++K+++I E L Sbjct: 62 SACKMMDAKVHPDFIQIEKDTKITKIETIKEKLLKEVSIKPYKGKYKIFVIAEAETLRSV 121 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 NA+LKT+EEPP + L TT+ + L TI SRC+ L +++ + Sbjct: 122 GQNAILKTIEEPPTYALIFLVTTNIEMLLPTIRSRCIHISFSGLSETELKDYCKKYSINN 181 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + + L + AEGS+ L D + +A+ +L + Sbjct: 182 KL------IHL--KFAEGSIGK---LKDNIYDEKFLDLRAEAMDYILSICSCNVL----- 225 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + +++ +L + + + A + ++ Sbjct: 226 --------SLYKVVSVLRENKEFVLKILEFWKLFFRDMLLYKRI-QATDLYFSDYINDIK 276 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 LA + ++I + + + ++ + + +E LL Sbjct: 277 RLAAIMQYSEISENIKNIDVASNDIQNNINAVLVIENLLL 316 >UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A325_NATTJ Length = 320 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 144/345 (41%), Gaps = 44/345 (12%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP 72 +F +GQE ++ L L+ G HAY+F G G GK S+AR+ A GL CE+ + P Sbjct: 14 SFDKFIGQEKIVKNLLRQLTSGNTGHAYMFVGPEGQGKGSLARIFAAGLLCESVDENSGP 73 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C ++++ DL+ I + S+ K+E+ R + + Y P + K+YLI+ + Sbjct: 74 CGICYSCSKLKKSIHPDLVTIGSESKSIKIEEVRKVKQYINYRPTDSKKKIYLIESAENM 133 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +R N++LK LEEPPE+V FLL + +++ T++SRC L EQ+ L + Sbjct: 134 TREGANSILKMLEEPPEYVVFLLTVNELERMLPTVISRCQIHQFLPLTEEQLYKALSN-- 191 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L+L + G + L++ + + V ++ Sbjct: 192 ---RTHASQEQLELAVSLSGGMIGRGLAILQDESYYDMIKKAHSFV---------EKFEK 239 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L ++ + + E L LL I Q +D Sbjct: 240 LT-------LPELLDWAEKI-----DSMDNCEEFLELL-NIVFKQKLSENQTSD------ 280 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + +L + +L +R + +E +++ Sbjct: 281 ---------SINKLARIMEIILETKGQLLTNVNRLLALEAMMVKI 316 >UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=Rhodothermaceae RepID=D0MDY9_RHOM4 Length = 391 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 148/384 (38%), Gaps = 66/384 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++GQ+ V+ AL L+ R+ HAYLF G G GK + A + A+ L CE G + P Sbjct: 1 MTWDRIIGQKRVVEALRRALAQQRVAHAYLFYGPDGTGKRAAALMFAQALQCEQG-GSDP 59 Query: 73 CGVCDNCREIEQGRFVDLIEI-------------------DAASRTKVEDTRD------- 106 CG C C ++++ D+ + A V+ R Sbjct: 60 CGQCVPCTKVQRLIHPDVQVMLPHPSDADPDDLYERLQRLAAEPYATVDYIRRPVLDDPT 119 Query: 107 -----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 L +V + P GR+KV ++ + + + NA LK LEEP Sbjct: 120 RASNKQAFYSVARINESLRRSVSFKPLEGRYKVAILIDADRMRVEAANAFLKLLEEPGPQ 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 F+L T+ P L T+ SRC L E I L E + +LAR Sbjct: 180 TVFILTTSRPDHLLPTVRSRCQHLRFDPLPAEAIAQALV-----EREGVDEARAMVLARM 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A+GS AL L + + D +QAL+ + + E ++ L+ Sbjct: 235 ADGSYSRALDLLENEVL----------------QADREQALAFLRQAYRFHSEALVDLVE 278 Query: 270 EAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + +A G E + LL MLG + + + + + +R + +P D++ Sbjct: 279 QLSALGRERLKGLLQLMLGWVRDLVLFRTLGDGAELVNLDQQEAIRRFCQNLPEADLEGM 338 Query: 329 YQTLLIGRKELPYAPDRRMGVEMT 352 + L + + + + + Sbjct: 339 ARLLEEALELIERNVQPFLVLSVL 362 >UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET70_9FIRM Length = 340 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 67/353 (18%), Positives = 137/353 (38%), Gaps = 33/353 (9%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TP 72 +++G E + + +I HAY+ G +G GK +A +K L CE T Sbjct: 5 NEILGNERIKEHFITAVHHKKISHAYIMEGDKGSGKKMLAEAFSKILQCEGRETTGLVES 64 Query: 73 CGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVH 129 CG C++C ++E D+I + + + V + R+ +++ V+ P +G +K+Y++DE Sbjct: 65 CGKCESCIQMEYHDHPDVIWVSHEKPNVISVGEIREQIVNTVEIMPYKGPYKIYIVDEAE 124 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + NA+LKT+EEPPE+ L TT+ TILSRC+ + + + L Sbjct: 125 KMNAAAQNAILKTIEEPPEYAVIFLLTTNRGAFLDTILSRCILLATRPVPGTAVEKYLV- 183 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E + + A + G++ A ++ +++ Sbjct: 184 ----EKCSVSKEEAEFAAGFSLGNIGKAEAIISSEEFQDLKELT---------------- 223 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN----- 304 LS++ + E + + E E L I +++ + Sbjct: 224 LSILRYIHEIESYEIADKVKEYKKYKNRIEDFFDIFLMWFRDIMLLKADNSVNAEAAKKK 283 Query: 305 -DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +++ + I + R + + +E+ ++ A Sbjct: 284 IIFKNEYAYLKKQVDKLDLEAIDYVIGKIHRARVRIKSNVNFDATLELLIVEA 336 >UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bacillus thuringiensis RepID=Q3F084_BACTI Length = 431 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 161/336 (47%), Gaps = 12/336 (3%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 + R++RP++ + G E + A+ + L+ A L GT G GKTS+AR++AK CE Sbjct: 14 ITRRYRPKSMDEYKGNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYLCE 73 Query: 66 TGITAT-PCGVCDNCRE----IEQGRF---VDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 CG C +C+ IE G + L EI+A+ + + LL+ QY Sbjct: 74 DRDEEKGACGECYSCKMMDDYIETGNTDGLMGLREINASKDSGLTAINSLLEEAQYPNPD 133 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLK 176 G +K+Y++DE H +S + N+LLK +EEPPE+V F+ TTDP K+ T+L+RC ++ +K Sbjct: 134 GSWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTTDPDKMLDTLLNRCNIKLDVK 193 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 EQ+ L I +E I+++ + L L+ +E +R AL + I + + Sbjct: 194 KPSEEQLTQILLDICVKEGISYDRKGLSLIVDRSELVIRQALMDLENVIVQTESA-EHRF 252 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 VS + + A+++ + + +++I++ + + + + R + Sbjct: 253 VSKIFDKHPNSLYFDFYRALLKHDTHQFVSIIHKV-KTKMTVQEFVKNLTNFTKR-GIYI 310 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + L M+EL + ++ + + L Sbjct: 311 WNGVNLEGITENELKNMKELFKQFKLEELAMMIEFL 346 >UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 Tax=Clostridium RepID=C9XSF1_CLODC Length = 311 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 68/346 (19%), Positives = 139/346 (40%), Gaps = 42/346 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITAT 71 F +++GQ+ L N + ++++AY+F G G+GK A L+K L E Sbjct: 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLE--- 57 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 D + I K+ R+L ++ P + +K+Y+I+ Sbjct: 58 --------------NSPDYVLIKPDGNSIKIAQIRNLQSDIVIRPHK-DYKIYIINNAEK 102 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + NALLKTLEEPP + +L T + + L TI SRC + +E ++ L Sbjct: 103 MTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLI-- 160 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + E QLLA + GS+ +AL+L+ + S + + Sbjct: 161 ----NTGIEEERAQLLAIFSRGSIENALNLSQSSEFS----------------MMREDIQ 200 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ M++ N ++ + N + ALL M+ I +++ + Sbjct: 201 QYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDKL 260 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ ++ I + + + + ++ + + +++ L Sbjct: 261 VFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVMSLNI 306 >UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanobacillus iheyensis RepID=Q8EU50_OCEIH Length = 329 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 141/345 (40%), Gaps = 22/345 (6%) Query: 14 TFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++ Q + N ++ GR+ HAYL G RG GK IA LLAK L C A P Sbjct: 3 TWEEITDLQPIASRTIINSINKGRVSHAYLLQGERGTGKRDIALLLAKYLFCLHREGANP 62 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C+NC+ I+ G DL I+ + K+E R+L Y+ KVY+I + L Sbjct: 63 CHTCNNCKRIDSGNHPDLHWIEPDGQSIKIEQVRNLQKEFTYSGMESNQKVYVIQDADTL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ N LLK LEEP + ++ T + + TI SRC L+ L + + +L+ Sbjct: 123 TVNAANRLLKFLEEPSKQTTAIMLTENGHSILSTIRSRCQIIELQPLPPDVMNQRLQD-- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + H LL+ + ++ALSL +G ++ Q + M +D L Sbjct: 181 --EGVHHLE--ANLLSALTN-NTKEALSLHQDEWFAGARKIVVQLI-EMYVQKPEDVYL- 233 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + G++ +L I + + + Sbjct: 234 ---FIHQQWIPHFKERTEQ--QMGLDL------LLLGFQDILHQHIKEDTTTVLLPKEDA 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +M + + Q +L +++L + +E L+ Sbjct: 283 KMERAMMSFSKEQLLFILQLILTAKRKLKQNVQPTLVMEQLALQI 327 >UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKB9_DESAA Length = 330 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 36/348 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--------P 72 Q+ L L+ L+ + HA +F+G G+GK A A NCE P Sbjct: 7 QKRALGFLSGILAKNNVAHALVFTGDAGLGKRQAAVHFAMARNCEGTPDPESAMFGSQGP 66 Query: 73 CGVCDNCREIEQGRFVDLIEID--AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CGVC +CR+I G D++ ++ AS K+E RDLL + P+ G+ +V LI Sbjct: 67 CGVCGSCRKILSGNHPDVLFVEKRGAS-IKIEQIRDLLSVLAMRPSEGKTRVVLISGAGD 125 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ S NALLK LEEP + F+L +L T++SRC + L V + L Sbjct: 126 MTASSSNALLKALEEPSDTTCFVLLAGQKSELLPTVVSRCQEIRFSPLPVSFLIESL--- 182 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E+ +P A A GSL A +L G + + Sbjct: 183 ---ENDGVDPDLAHACAFIASGSLDKARALASDQ-----------------GLARRNWLV 222 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 + + A+ + + + L A + L + L + + + +P + + Sbjct: 223 NQLCALEDQGMGQALLLAEFLAKDKNAAQEDLNWIRTWLRDLLVSRYAPQRV--INRDLM 280 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + P + Q + +L + R+ +E +R + Sbjct: 281 GLVNSRSAKTAPEVLLEKLQAVADCENDLTRNVNTRLSMENLCMRLSS 328 >UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNC0_9FIRM Length = 334 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 32/350 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + + G E AL L GR+ HA LF+G G+GK + R+LA + C+ PC Sbjct: 4 RWDTISGHEKQKEALRTMLREGRLPHALLFTGPDGIGKRMVGRVLAAAILCDA--EDGPC 61 Query: 74 GVCDNCREIEQGRFVDLIEIDA------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 G C++CR ++ G D +E+ A++ ++E R + V P + + LID+ Sbjct: 62 GHCESCRAMQLGSHPDYLEVVPEQNGKSAAQIRIEAIRSMQTQVSRYPVLAKRRTVLIDD 121 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V F+L T+ L TILSRC+ L +++R L Sbjct: 122 ADRMNEAAQNSLLKTLEEPEGPVTFILVTSARSALLDTILSRCMPVAFGMLSPQEMRSVL 181 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 LA ++GSL AL L + G D Sbjct: 182 LQ------HDVPEAEAAELAALSDGSLGRALLLHEHE-----------------GLHLRD 218 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDM 306 +AL + + + ERV +L + AR E + + LL + ++ + Sbjct: 219 EALDFLAQLPSFDMERVWSLAADMGARDRESLREYFLYLNMLLRDLLVLAEDGGSPLLYH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 I ++ L T P + + ++ L + R+ +E L+RA Sbjct: 279 GDIRAKLLALLPTYPEGRVFALLAEVREVQRRLQANVNLRLLMEGFLIRA 328 >UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bacteria RepID=B8HT26_CYAP4 Length = 1232 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 129/352 (36%), Gaps = 9/352 (2%) Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + + + Sbjct: 704 HNCHMLSGSAFNALLKTLEEPPKRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLTDMVQ 763 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I +E I AL L+A+ A+G LRDA ++ DGQ++ + V + G + Sbjct: 764 HLSTIAEKEGIDIATDALTLVAQIAQGGLRDA-ESLLDQLSLLDGQITIERVWDLAGAVP 822 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA--ALG 303 + L L++A+ + E + RG E +L + + + + +P L Sbjct: 823 EQDLLKLLQAIATDSAEATLDQARYLMERGREPLVVLQNLASFYRDLLIAKTAPQRHDLV 882 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + A+ T I Q L ++ R+ +E+ LL L Sbjct: 883 AITLSTWEELCTFAQNWETTAILAGQQHLRTCEAQVKNTTQPRLWLEVALLGLL------ 936 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 P V + Q + Q P P + Sbjct: 937 PTYLTAVRANVDQGTSAIGPPPTRQTVARSPQPTVQPVPTPPPPQPEPLTPTPPVPPPSP 996 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + L+ V+ + + Sbjct: 997 RPVSPPPAAEPSPAPPVQTEKTELQPSVPVSPHGDLDSLWQKVINQVQPTST 1048 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 68/130 (52%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQ + T L N ++ +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQKFADLVGQAAIATTLTNAINQEKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I QG +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLQSEKPTPYPCGKCEACRTIAQGVALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEV 128 R+KVY+IDE Sbjct: 121 RYKVYVIDEC 130 >UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 Tax=cellular organisms RepID=B4AZI0_9CHRO Length = 843 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 109/523 (20%), Positives = 194/523 (37%), Gaps = 23/523 (4%) Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + + Sbjct: 284 VHNCHMLSVAAFNALLKTLEEPPNRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLLDMV 343 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 + L++I N+E+I + +A+ L+A+ A G LRDA ++ G V+ + V ++G + Sbjct: 344 NHLKYIANQENINIDDQAITLVAQIANGGLRDA-ESLLDQLSLLSGTVTPERVWELVGAI 402 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA--AL 302 + L L++A+ N + ++ L RG E +L + G + + + +P+ L Sbjct: 403 PEIDLLDLIKAIRTQNPDTILDLCRGLMNRGKEPLTVLQNLAGFYLNLVIAKTAPSRADL 462 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 A+ + E A+ +I Q L +L R+ +E+TLL L+ Sbjct: 463 VAVTASTWNALCEEAQQWRLEEILQGQQHLKDSEVQLKNTTQPRLWLEVTLLGLLSVGVT 522 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + Q P P S P PE + + Sbjct: 523 VAPSVEQKSVNGSNGNNGKGNYQEIQTPSIPPSRVTPPPPQTKPEVKPEPIQESPPPAPP 582 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + + + L L V L R + Sbjct: 583 REEPFTPEHNLQPLEDLEEIWKMVLTYL-KVPSTYALFSQQGHLSSFDGSVAIVRISSPN 641 Query: 483 PVMQQKEVVATPKAL-KKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSLPKLVEQVA 540 ++ K A + K+ + ++ ++ E+ + L K +E + Sbjct: 642 LLILFKGKTAEIEDAFKEIYQKPIKVKIEVNTIDKSPEQPARFQTPPKPLESVKELEPLN 701 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 +++EE + A + + +DN +P Sbjct: 702 PTSFQEEKPAVNTNGKHPPIEPSSTPEAAPQ-----------PPSVE---NDNTGGESPA 747 Query: 601 EW-RQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A E+ Q ++ L + FD EL + I P Sbjct: 748 ISNFSAASSEETQQVYSDKEIQKAVEQLIKAFDGELVD--IVP 788 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 68/130 (52%), Positives = 91/130 (70%), Gaps = 2/130 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQ+ + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFKDLVGQDAISVTLINAINTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T TPCG CD C+ I +G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLETDKPTPTPCGKCDVCKAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQC 120 Query: 119 RFKVYLIDEV 128 R+KVY+IDE Sbjct: 121 RYKVYVIDEC 130 >UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=Clostridia RepID=A4XHH7_CALS8 Length = 320 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 143/347 (41%), Gaps = 33/347 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 VGQ+ ++ AL L HAY+F G +G GK +AR+ +K + CE + Sbjct: 1 MNLDTFVGQKEIVFALKKALKN--PFHAYIFEGEKGFGKKLLARVFSKHILCENKSS--- 55 Query: 73 CGVCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CGVC +CR E D I + VE R+++ ++ P KV++I+E Sbjct: 56 CGVCKSCRLFEASSHPDFHIIKRQEDKKEISVESIREIIKDLSRGPIFSDKKVFIIEEGE 115 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 LS + NALLKTLEEPP + F++ + ++L T+LSR + K +I Sbjct: 116 ELSISAQNALLKTLEEPPTYALFIITCNNIERLLPTVLSRSIVLSFKRYSASEIA----K 171 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 IL + + + + + +G+ + AL ++ + + + + + D + Sbjct: 172 ILEQNGLEPKD----YIVKLCKGNPKIALDFYNKEVQNKRDYIFDKLLCY------DGAS 221 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L++ E++ E++ ++E L ++ L + + + Sbjct: 222 FDLIKEF-ESDFEKL----------KNDFEFLFKNIIYFLRDALFYKKTKSIELITNTDK 270 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ E + + I Q +I K ++M L+ Sbjct: 271 LEKIIEFSNKHTISHIYKLLQDFMILEKYPDANVISDNVLDMIFLKL 317 >UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cystobacterineae RepID=Q1D8K6_MYXXD Length = 344 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 86/363 (23%), Positives = 138/363 (38%), Gaps = 44/363 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T A V+GQ + AL L G +HHAYLF+G GVGK A LA+ L C Sbjct: 1 MTLATVLGQPRAVDALQAALRSGAVHHAYLFAGPEGVGKELAAVGLAQALTCPEQPDVG- 59 Query: 73 CGVCDNCREIEQGRFVDLIEI-------------------DAASRTKVEDTRDLLDNVQY 113 CG C +C+ +E+G D+ + + +VE R L + + Sbjct: 60 CGACASCQRVERGLHPDVTWVMPDDERVSRGLAGRSDFTGTPSRELRVEQVRQLQERIAL 119 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 R KV LI ++ + NA LKTLEEPP +L + +L TI SRC + Sbjct: 120 RGLESRRKVALIVSAQTMNVQAQNAFLKTLEEPPSDTTIILVASAIDRLLPTIRSRCGKV 179 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 H L V+ + ++ E + L A A GSL A++L A++ ++ Sbjct: 180 HFGPLPVDMVAQRVA-----EARKLDAETAMLAAVMAGGSLGRAMALDVDALSRRKDTLT 234 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 EA+ + ++ E E+ L + +A Sbjct: 235 A------------------FEALRGEDAVGLLRFAEAHGGSREEAESTLELLALWTRDVA 276 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +V+ + G + R++A + + L R + R+ +E L Sbjct: 277 LVKSGLES-GLANRDMVDLARQVAARTSDILLHRRHSLLDAARAAIARNGAPRLQLERML 335 Query: 354 LRA 356 + Sbjct: 336 IDL 338 >UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=Paenibacillus RepID=C6CRH9_PAESJ Length = 325 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 34/350 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + V GQ L + L G++ HAYLF G G G+ ++AR AK L C +G Sbjct: 1 MSMEQVAGQWKAKRILKHALQSGKVSHAYLFYGPSGTGRKAMARAFAKALFCTSGGD-DA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C CR+ E G DL+ I + K++ R+L + Y + KVY+++ + Sbjct: 60 CDHCLECRKFENGNQPDLLTITPDGQSIKIDQIRELQRELAYRGSGASRKVYIVERAETM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEP + +L T + Q + TI SR ++ L Sbjct: 120 TLQAANSLLKFLEEPLSPIVAILITDNGQAVLPTIRSRAQWVPFLPFSASEMLQSL---- 175 Query: 192 NEEHIAHEPRALQLLARAA---EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + A LARAA L A + Q + V Q L Sbjct: 176 ------VDEGASPTLARAAVQLSSGLDGAREIIQQNQFAEIRNVVIQLGKESLTRF---- 225 Query: 249 ALSLVEAMVEANGERVMALINEAAARGI--EWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ + + E + +L ++ + Q Sbjct: 226 ------------TAGMLTAQQQFFKTDLAGEAQLMLSLLVLWFKDMIQFQAGRQE-SIVY 272 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + A P + L K++ ++ VE L+ Sbjct: 273 IDQLDWISKHAFNRPIESWIACIEHTLEAGKKIRSNVSPQLAVEQLLVNL 322 >UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9RA67_AMMDK Length = 320 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 87/352 (24%), Positives = 137/352 (38%), Gaps = 34/352 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F V+GQE L L L GRI HAYLFSG GVGK + A A + C P Sbjct: 1 MVFGVVLGQERALRLLRRDLETGRIAHAYLFSGPEGVGKRTTAEFFACSILCLA-PRERP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR G + + + ++LL V Y A G ++V +ID+ Sbjct: 60 CGECRSCRLFRMGNHPNYYFLAPEQGGSLGIALVKELLSKV-YRSASG-YRVAVIDQAES 117 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LK LEEPP V FLL T+ + L T++SRC + L + L+ Sbjct: 118 LTLEAQNAMLKLLEEPPRLVCFLLVTSQKEALLPTVVSRCREVKFGRLPRSVVAACLK-- 175 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E E A LA + GSL AL+L+++ + ++ + +L L Sbjct: 176 --ERGFPPEEAAC--LASLSGGSLGKALTLSEERV-----KIWRERALELLVAPRLRTLL 226 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 S E + + + +L + + QL+ E Sbjct: 227 SW-EEVKDKDLA----------------LTVLDFFTLWVRDFLVFQLTREPKLLLNGDRE 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + E +P + + R+ L + + +E ++ Sbjct: 270 EKFWEE-TDLPLDYLLVAGDLADKARQWLRFNVRPAVCLEGLVVGLARKRGE 320 >UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QU04_CHLT3 Length = 389 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 162/399 (40%), Gaps = 65/399 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---T 69 + + GQE ++ L + R+ +A+LF+G GVGK ++A LAK LNC++ T Sbjct: 1 MAWERINGQERQISVLRRAIKTNRLPNAFLFTGPEGVGKEAVAIELAKVLNCDSPNALLT 60 Query: 70 ATPCGVCDNCREIEQGRFVDLIEI------------------------------------ 93 A C C++C++I + +L I Sbjct: 61 AEACEKCESCKKISALKHPNLEFIFPVEKILLEKTSETGADRAKQEDALERMKALLEEKR 120 Query: 94 ---------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D A + L + Y P G+ +V+++ + ++ S N LLK LE Sbjct: 121 RNPYHSLRMDKAMGILKDQILLLQEKAAYKPLAGKKRVFILSQAESMNEASANKLLKLLE 180 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP +V F+L ++ P+ L TI+SRC L E+IR LE + + E A + Sbjct: 181 EPPPYVLFILVSSQPEMLLPTIVSRCQPLRFSKLRPEEIREFLER----QSFSLEADAER 236 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN-GER 263 +A + G+L + + Q++ + + + D+AL L+ ++ + G Sbjct: 237 FIASFSRGNLNHVVQMAFQSVENREKPELQRT---------RDEALQLLRMLLSRDRGHE 287 Query: 264 VMALINEAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 V+ + + + R E +L+ ML + + Q +P G A IE + + A+ Sbjct: 288 VIRQVEQFSKRDKTRDEQRQILLAMLRIFQDVVRKQNAPNETGLVNADIETAISKFAQNF 347 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 P D + + ++ + + ++ F Sbjct: 348 PDADFESAVKETESAIYKIGRNANPFLTFSALCIKLKTF 386 >UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=Bacillus RepID=Q5WLY0_BACSK Length = 332 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 126/334 (37%), Gaps = 22/334 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L + R+ HAYLF G G GK +A L+AK C+ A PC C +C Sbjct: 14 QPQVVPMLVASIQKNRLAHAYLFEGEAGSGKHEVALLMAKRFFCKEHNGAEPCHACSDCL 73 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G D+ ++ + K E L Y KVY++ V ++ + N+L Sbjct: 74 RIEHGNHPDVHQVAPDGQSIKKEQIEYLQKEFTYRGMESAAKVYIVSHVDKMTASAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L T + + TI SR Q QI +L E I E Sbjct: 134 LKFLEEPQGQTLAILLTENGASILPTIRSRAQQMRFLPPSQTQIASKL----VAEGIE-E 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 +AL L A G+ A +L + + V Q + + D + + Sbjct: 189 NQALFLAAL--TGNKAYAKALAEGDWSFQARTVVLQLMHELFTRPDLAAI-----TLADK 241 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + + + G L ML L + +Q A + + ELA + Sbjct: 242 WIPLMKERLQQ--EMG------LEMMLLWLRDLLYIQAGKQDKL-VYADNKSKFDELALS 292 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 I+ +L ++ L ++ +E L Sbjct: 293 TSQHTIRAAMSHVLEAKRHLSANVSIQLVMERLL 326 >UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYD5_9DELT Length = 352 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 143/364 (39%), Gaps = 35/364 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITAT 71 TF+ ++ Q+ L + G++ HAYLF G GVGK + AR LA LNC+ Sbjct: 4 TFSQIIEQQQAKEILRRAVGGGKLAHAYLFRGPAGVGKKTAARALAAALNCQGDRPEPLE 63 Query: 72 PCGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR+ D +EI + A K++ R+L +Q+ P +V ++ EVH Sbjct: 64 ACGRCPSCRKFASANHPDFLEIMPEGAG-IKIQQVRELKKALQFPPLEAGRRVVVLGEVH 122 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + R + N+LLKTLEEPP LL + + TILSRC L VE + L Sbjct: 123 TMRREAANSLLKTLEEPPADTILLLTGDEAGGILPTILSRCQIIPFYPLPVETLARTLYQ 182 Query: 190 ILNEEHIAHEPRA----------LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + E LA AEGSL A L +Q + + Q + + Sbjct: 183 EATDHRQELEMATDWSSDPVFQNCLTLATVAEGSLGRARQLQEQELL----PLRRQVLES 238 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-S 298 +L + A V+ A E L + H +A++Q S Sbjct: 239 LLNLQPEAPAA----------PAVVLYWAERCAQLKEELPDFLDLLTSCYHDLALLQTLS 288 Query: 299 PAALGN-----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P N + + A P ++ Q L + L +R + E+ Sbjct: 289 PQDPANRHNPIINRDLLPLLSAAAAHRGPATLESCRQHLRRAQGRLRRNCNRTLVCEVLF 348 Query: 354 LRAL 357 L Sbjct: 349 FDLL 352 >UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax=Bacillus RepID=Q73FH7_BACC1 Length = 327 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 79/351 (22%), Positives = 132/351 (37%), Gaps = 36/351 (10%) Query: 13 QTFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 +T+ + Q + L N ++ RI HAYL G +G GK + A +AK C Sbjct: 3 KTWEQLSAIQPIGVKMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVE 62 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC VC NC+ I+ G +L + K + DL + KVY+I+ Sbjct: 63 PCHVCTNCKRIDSGNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ ++ N LLK LEEP +L T ++ TILSRC + L E + +L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQD- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + +L LA S +AL+L + + + Sbjct: 182 ---EGVT---TSLSTLAAQLTNSFDEALALCSDEWFAQARAL----------------VI 219 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEAL---LVEMLGLLHRIAMVQLSPAALGNDMA 307 L EA+ E + + + + E E L L +L + + VQL Sbjct: 220 KLCEAL-EKDKASIFFVQEKWGKHFGEKEQLQQGLDMLLLIYKDLLYVQLGEEDRLVFHE 278 Query: 308 AIELRMRELARTIPPTD--IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +E+ + I +L + + + ++ E +LR Sbjct: 279 Q-----KEMFESFSYAQKRIVSALFNILEAKNRINANVNAQLVFEQLVLRL 324 >UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Tax=Thermomicrobia (class) RepID=B9L1A1_THERP Length = 350 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 85/345 (24%), Positives = 136/345 (39%), Gaps = 29/345 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + LA + G++HHAYL +G G+G+T++A + A+ L CE PCG C Sbjct: 18 IIGHEGAVRTLARAIESGQVHHAYLLAGPAGIGRTTLAFVFAQALLCEGAAEQRPCGTCR 77 Query: 78 NCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +C+ I + D+ I + A + ++ R+L ++ P G ++V ++D+ L Sbjct: 78 SCQRIARRVHPDVTRIGLDTGAEEAKQVSIDQVRELRASLSLRPLEGAWRVAIVDDAERL 137 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 SR + +ALLKTLEEPP + +L D Q LP TI SRC L+ L + + L Sbjct: 138 SREAADALLKTLEEPPPYAVLVLVAEDAQALPETIRSRCQTIVLQPLPISVVARAL---- 193 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML--GTLDDDQA 249 E P LAR G + A L A + V A + A Sbjct: 194 --EVRGAAPELANRLARETRGRIALAFRLVSDEAARVQREKRVAEVIAAMTEPLAAIGFA 251 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L E V++ + A L L + P+A Sbjct: 252 RRLAEQYRRGRRAEVLSSLQLA--------------LELWRDALWLAADPSAPI-VHEDA 296 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + AR L +L R+ ++ ++ Sbjct: 297 RTTLERFARRCGIAGACAGLSATLQALADLEANVQARLALDAAMV 341 >UniRef50_B3T4L9 Putative ATPase family associated with various cellular activities (AAA) n=1 Tax=uncultured marine microorganism HF4000_ANIW137I15 RepID=B3T4L9_9ZZZZ Length = 347 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 40/360 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----I 68 A++ GQ+ ++ L S GR+ +YLF G GVGKT+ A A L C+ G Sbjct: 1 MRLAEIKGQDRAVSGLRRDFSTGRMVPSYLFVGPEGVGKTTTAIAFAGLLLCKKGARGYE 60 Query: 69 TATPCGVCDNCREIEQGRFVDLIEI--DAA-----------SRTKVEDTRDLLDNVQYAP 115 CGVCD CR++ DL+ + D R + R L+ Q P Sbjct: 61 AEDACGVCDACRKVRAESHPDLMIVRRDGQFIKVGKFEKDRKRGEPPQIRQLIAAAQRKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G KV ++DE H + + NALLKTLEEPP +L LP T++SRC Sbjct: 121 YEGPVKVLVVDEAHRMKNEAANALLKTLEEPPPGTVIILTAAMLGALPQTVVSRCRVIRF 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L+ + ++E + +L+A A+G + AL + +V + Sbjct: 181 RKLERSWLASEVERLRGR-----SAEEARLVASFADGRMDRALE-------ADPEEVFAR 228 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 A+ L++A +E + ++ G E EALL L L+ + V Sbjct: 229 RTKAL----------ELLDAALEGRTAAALKNVSGVGRPGEEAEALLDVFLSLVRDVRAV 278 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMTLL 354 + + + +++ ++ R ++ + ++G E LL Sbjct: 279 RGGARPGFLVHEDLANELARRGSACTNKNLEDLFERARSLRADIRLKNANPQLGWESLLL 338 >UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCP0_9FIRM Length = 326 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 135/356 (37%), Gaps = 39/356 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L R A LF G G+GK +A A+ C T C Sbjct: 2 WDTILGHEANKIFLGNMLQGERKTPALLFYGPDGIGKKKLAYEFARSFLCLDDPTHDDC- 60 Query: 75 VCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +CR D I ++ +E +++ ++P +KV LID + Sbjct: 61 KCRSCRAFCGESHPDFIYVEGQGARHDILIEQIKEVEKKAVFSPVLSPYKVCLIDGADRM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP + F+L ++ ++ TI SR + + L E+ +E + Sbjct: 121 REEASNSLLKLLEEPPTYWLFILVASEISRILPTIRSRLMAIRFEPLHREKAVRVMEELS 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + LAR ++GS AL L + +A+ M G D S Sbjct: 181 VPQG--------ETLARLSDGSPGKALHLAEAEALM----WRERALFIMEGIEDPYLMAS 228 Query: 252 L--VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L +E + + + ++ + L +L +L M+Q + L Sbjct: 229 LARLEWLGDMDVDQT--------------QTFLEMLLLILRDAMMIQE-GSGLLLYNEDE 273 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRK---ELPYAPDRRMGVEMTLLRALAFHPR 362 R+ + + + ++LL + L + RM +E L F Sbjct: 274 RERIASIFASFT---LSALKKSLLETERFYLGLNKGVNTRMILEALFLEIHTFLKE 326 >UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD908 Length = 350 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 136/351 (38%), Gaps = 32/351 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ ++D+ G ++ L + R+ HA LF+G GVGK A +LA+ L C G A Sbjct: 21 PKDWSDIRGHAEIIRRLRFLAAAERLPHALLFTGAEGVGKRRTAHVLARTLLCAKGGDA- 79 Query: 72 PCGVCDNCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR +E G D E A+ + + R++L AP R ++ LI Sbjct: 80 PCGHCDSCRTMEAGVHPDYFEAVPEARGKGAAAIRTDAVREILVAASGAPISARRRIILI 139 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D+ ++ + N LLKTLEEP V F+L T+ + + TI SR ++ AL ++ Sbjct: 140 DDADRMNETAANRLLKTLEEPSGEVIFILVTSACEAILPTIRSRAVRIAFGALPRTELET 199 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + +A A+GSL A +L + ++ D + V A L L Sbjct: 200 ALAERGTDNG--------ETIAALADGSLGRAYALAAEGLSLRDDALR---VLAELPALS 248 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + E + A G + + ++ A Sbjct: 249 MEDIWRYAEKI------GAYTHEERRAWLGY--------FQTAMRDLLLLLEDGTASQLF 294 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + L + I + + + E L+RA Sbjct: 295 HPDRRADLGVLLAHMLRPQIFALLDESRKLLRRFDANVNPALQAEAFLIRA 345 >UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH Length = 634 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 2/168 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++K+RP F +++GQ V+ +L N + RI YLF G RG GKTS AR+ + LN Sbjct: 449 RSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALN 508 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ--YAPARGRFK 121 C PCG C C + G+ D E+D A++ + R LL N+ +K Sbjct: 509 CVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYK 568 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 V++IDE H+L ++ + LK LE P + V F+ TTD + +P TI SR Sbjct: 569 VFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSR 616 >UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacillaceae RepID=B1HS71_LYSSC Length = 334 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 131/340 (38%), Gaps = 28/340 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L R+ HAY+F G +G GK I K + CE PC C NCR Sbjct: 12 QPVVMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEHPNENVPCETCRNCR 71 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++ G ++ +I + K++ R+L+ ++ K+Y++ L+ S N + Sbjct: 72 RVDSGNHPNIHQIYPEGQFIKIDQMRELIGEMKMMGVEEGRKIYVLHHADRLNTASANMI 131 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP V +L T Q + TI SRC + + + L+ +I+H Sbjct: 132 LKFLEEPDGEVTAILITEQMQSILPTIRSRCQHIKFQKMPRHVLLQHLQG----NNISH- 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 S+ +S+ + S + L L LVEA+ + Sbjct: 187 -------------SMASTVSMMTNELEMAISLASDEQF-----ALARKTVLKLVEAIRQN 228 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 E ++ + E E E L +L I ++ +P A + +E+ Sbjct: 229 VHEAMLIVHEEWLPHFKEKSEMEQALDLLLFAYRDIVSIKANPEAAC-TYPDMLPLFKEI 287 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A + +++L R L +R + +E +L Sbjct: 288 ALYSTYEQLSKQMESILQARASLQRNMNRTLLMEQLMLNL 327 >UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPS4_9FIRM Length = 338 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 26/355 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + ++VG + + L L GR+ HA LF+G GVGKT +A+ A L C+ A P Sbjct: 1 MFWDEIVGHDETIKMLQGMLRRGRLPHALLFAGPEGVGKTLVAKAFAAALLCQ--EAAAP 58 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR+ + L I A K++ R L A +++ +I++V + Sbjct: 59 CGRCLICRQAAEFAHPALQVIVPAGNTIKIDQIRQLQHEAALAG-GDEWRLCIIEQVERM 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP + F+L T P + TI SRC L E + L Sbjct: 118 TAQAANSLLKLLEEPPPRLIFILLTALPHAVLSTIRSRCQVLRFAPLPPEVLAAALSR-- 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + A ++ AR + G + AL+L + Q A+ A L + + S Sbjct: 176 ----RGYGEEAARVAARLSGGRMGTALALLTPGGMALRDQ--AAAILANLPAANMETVWS 229 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 LV A++++ A ++ A L + LL + ++ + Sbjct: 230 LV------------AMLDKLAP--ADFTAFLHYLTCLLRDLLLLADGHRPDLLFNLDLTH 275 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + L + P+ + + + + R+ E + + Sbjct: 276 ELAGLVQAWTPSALFAALAAVRDAGRAVQGNASIRLTCEALFIHLVDLAKEGSDA 330 >UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V4M8_9FIRM Length = 346 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 146/352 (41%), Gaps = 35/352 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P ++D+ G ++ L + G + HA +F+G G+GK AR+LA+ L C A Sbjct: 18 PHDWSDIRGHAEIIRCLRRLAADGHLPHALIFTGAAGIGKRRTARVLARTLLCAAEGNA- 76 Query: 72 PCGVCDNCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR G D E+ A+ + + RD+L +P R ++ LI Sbjct: 77 PCGRCDDCRMTAAGVHPDYFEVIPEARGKGAAMIRADAVRDILIAASESPQRAGRRIILI 136 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D VH ++ + N LLKTLEEPP V FLL T + TI SR ++ L +I Sbjct: 137 DGVHSMNEVAANRLLKTLEEPPATVLFLLVTDAWDAVLPTIRSRAVRIAFGPLPRAEIAA 196 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L+ IAH + +A A+GSL A +L + ++ D +S + L Sbjct: 197 ELQR----RGIAH----AETIAALADGSLGRAETLAAEGLSLRDDALSFLTILETLRI-- 246 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGN 304 E + + R + A L + L + +++ + AA Sbjct: 247 ----------------EDIWKHAEQLGGRSYDERAAWLGYLQMALRDLLVLREN-AAAEL 289 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + EL +P + L + + + + + E LRA Sbjct: 290 YHVDRRAELTELLPAMPRQRVLLLMEEAGVLLRRFGANVNPALQAEAFFLRA 341 >UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UL15_METS4 Length = 699 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 4/265 (1%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ F D+VGQ+ + + ++ L G G GKT+IAR+L LNC + Sbjct: 13 KYRPRVFGDLVGQDGAVAWCKERVRERQVK-TLLLHGPSGCGKTTIARVLGNALNCRAPV 71 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 +PC CD CRE + E AS+ +ED R L+ + +R K++ +DE Sbjct: 72 DGSPCLSCDICREFKPKNDTYYREHLCASQGGLEDARMLVRASSASGSRKYRKIFALDEA 131 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 H ++ +F+ALL LEEP F+L TTD + +P +L+R L+ ++ + E L Sbjct: 132 HRMTGAAFDALLSRLEEPNSTTVFMLLTTDLEAIPEAVLTRSLRIEIRPISDEDALTYLN 191 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 I E + E ALQLL GS R + ++ G ++ V L D Sbjct: 192 KICRHEGLEPEAAALQLLVETGRGSPRRLIRDLERVKDFGS--LTYDGVRRALDLDHADV 249 Query: 249 ALSLVE-AMVEANGERVMALINEAA 272 + ++ A+ E+ + L+ Sbjct: 250 VPAYLKVALTGGPLEQQLRLLEGWV 274 >UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ECG6_9LACO Length = 330 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 140/351 (39%), Gaps = 32/351 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 QT ++ Q + + G++ HAYLF+G G GK+ +A +A+ + C P Sbjct: 3 QTITEL--QPRLTEHFMKLIEAGKLSHAYLFAGPAGTGKSELALFVAQIVFCTDKQAGMP 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR I F D++E+ D AS KV+ R L + G K+++I + Sbjct: 61 CGRCSECRRIADHGFPDVVEVAPDGAS-IKVDQIRFLKAEFSKSGVEGTKKIFIISDAEK 119 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLK LEEP V L T + + TI+SRC +F L+AL +++ +L+ Sbjct: 120 MTASAANSLLKFLEEPSGDVCAFLLTENANLILPTIISRCQEFELQALGFDELSEKLQQA 179 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 I+ + +L L L D+L + + T V Sbjct: 180 ----GISKDKASLLL-------GLTDSLEIAIELSKDDGFAAMTADVWE----------- 217 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQLSPAALGNDMA 307 + ++ + + + + LL ++ L+ + +++ A Sbjct: 218 -WFKLIMTNDLRAFVNVTTHLKQYFSDRSRQDMLLDLIVLLVRDVMLLKF-EEHGRTSFA 275 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +R + I + +L RK + +E L+ ++ Sbjct: 276 MHHDELRAFSEKISTQRACQATELVLDSRKLQAINVSFQNILETLTLKLVS 326 >UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5H0_9BACL Length = 326 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 122/348 (35%), Gaps = 34/348 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F +++GQE L + L I HAY+FSG G G+ +A + L C G Sbjct: 1 MSFQEIIGQETAKQLLQSSLRRREISHAYIFSGPPGSGQMEMAMAFVQALFCTRGGD-DA 59 Query: 73 CGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR++ G DL I D A+ K+E RDL Y G K Y+IDE Sbjct: 60 CGECLECRKVLHGNHPDLFTIKPDGAT-IKIEQIRDLQRIFSYRSESGNPKAYIIDEAEK 118 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLK LEEPP +L + + + L TI SR ++ E + I Sbjct: 119 MTVQAANSLLKFLEEPPSPAVAILLSDNGRALLPTIQSRAQWVPFSPVNPETMLQ----I 174 Query: 191 LNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 L E + A+ L A L L Q + V Sbjct: 175 LANEGFSTTLARSAVHLAA-----GLGPCRDLIQQNWFAEVRNV---------------- 213 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIE--WEALLVEMLGLLHRIAMVQLSPAALGNDM 306 L L + + G ++ G+ + L + L Sbjct: 214 VLQLGKEIAGRGGSPIITAQQMLFKSGLTDHLDMLFSLFHLWFKD-MIHALYHKHDQIVF 272 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + +K+L + + VE L+ Sbjct: 273 IDELQFINQHCSSRSAEQWIEAMALAAESKKKLRQHMNANLCVEQFLI 320 >UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZK45_PLALI Length = 365 Score = 241 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 71/359 (19%), Positives = 137/359 (38%), Gaps = 33/359 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATP 72 +++V GQ + L + GR+ H YLF G +GVGK +A+ A+ + C+ Sbjct: 4 WSEVRGQSMAIEQLRKAVERGRLAHGYLFVGPQGVGKRLVAQKFAQAILCKERKPHELEA 63 Query: 73 CGVCDNCREIEQGRFVDLIEID---AASRTKVEDTRD---------LLDNVQYAPARGRF 120 CG C +CR G D ++ ++ L + P G Sbjct: 64 CGTCTSCRPFLAGNHPDFQVVECPEGKREIPIDLLVGSKENRGQEGLCHGLSLKPLSGSR 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +ID+ H+L+ NA+LKTLEEPPE +L + + + TI SRC + L Sbjct: 124 KIAIIDDAHLLNDAGANAILKTLEEPPELAVLILVASTLETVLPTIRSRCHLVRFQQLGY 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV-SA 239 E I L E + E ++ +++ +GSL A + D A+ + Sbjct: 184 EDIEALLS----AEG-SIETGMVKEVSQMCDGSLSMAKEMLDPALWELRKTLRKTLCERR 238 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G S +E+ + I +++ L + ++ + Sbjct: 239 IPGQKTAQMIFSYLES-HSSETSAQRESIQHIF-------RFVIDDLRRVIQVVCGAETR 290 Query: 300 AALGNDMAAIELRMRELARTIP--PTDIQ---LYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + ++A+++ P I+ ++ ++ + + +E Sbjct: 291 EQNHSLVRDSHNEIVQMAKSLSPDPETIECFAKMCDRVMEASGQVLQNVNLSLCLEACF 349 >UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZZ9_UNCTG Length = 319 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 140/332 (42%), Gaps = 40/332 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----ITA 70 F ++GQ+ + ++N + G+I HAY+F G GVGK A AK LNC A Sbjct: 2 FESILGQKKIKKIISNQVKSGKIAHAYIFVGQDGVGKRLTAVEFAKILNCNVDDFIKTDA 61 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASR-------------TKVEDTRDLLDNVQYAPAR 117 CG C +C++IE+ DL ID A + K+E R + V Sbjct: 62 GTCGKCISCKKIEKNIHPDLHFIDFARQAELEEECLEKQRTLKIETIRYMQKEVATKIHE 121 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++K+++I+ ++ + N+LLKTLEEPPE+ +L + +P TILSR + Sbjct: 122 GKWKIFIIEPAERMNAAAANSLLKTLEEPPENTIIILIAKHKETIPQTILSRVQTLFFQP 181 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L +I L + + + +A +EGSL +A L G + ++ Sbjct: 182 LGQNEISSWLMLNC-----SVDAAKARDIAELSEGSLENAKKLV------GKNEKEEFSL 230 Query: 238 SAMLGTLD--DDQALSLVEAMVEANGERVMALINE-AAARGIEWEAL------LVEMLGL 288 T + L L + + + ++ A ++ +++L Sbjct: 231 WLKFKTRNFYISDILELSKNIAA---AGALECVDAMIAEAKKDFRMYPQRTAPALDLLSA 287 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + ++ + +++ +++++ + Sbjct: 288 SRVLLLKNVNAMTVLDNLFFDLSDLKKMSGLL 319 >UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnobacterium sp. AT7 RepID=A8U6Y2_9LACT Length = 328 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 136/342 (39%), Gaps = 30/342 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + ++ HAYLF G G GK ++ LA L C+ G PC C NCR Sbjct: 11 QPVLVKQFTKTVQQKQLAHAYLFEGISGTGKKEMSLWLAASLLCQDGEANLPCEKCQNCR 70 Query: 81 EIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + + D+IEI D S KVE R+L + K+++I++V ++ + N+ Sbjct: 71 RVFEHQHPDVIEIIPDGLS-IKVEQVRNLKAEFSKSGVESHQKIFIIEDVEKMTTGAANS 129 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP L TT Q++ TILSRC H +AL +++ +LE + ++ Sbjct: 130 LLKFLEEPEGSAVAFLLTTAKQRILPTILSRCQLVHFQALTKKKLMAELET----KGLSI 185 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 LL + S+ +AL + +++ + Sbjct: 186 NQ--ASLLVQLTN-SVEEALEMNGDEWFQEAKKIT----------------WKWFTLITS 226 Query: 259 ANGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + + + LL +L + M+ A + + Sbjct: 227 KDSQSFIYVQTTIMPHFKDRDAHRRLLDLILLAYRDVLMIHY-HTLDVLAYARYQKELDH 285 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + I + +L+ RK+L + + E +L+ + Sbjct: 286 IKTEYTGKAIIQAIEDVLLSRKKLESNVNAQGVFEQLVLQLM 327 >UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZV3_ABIDE Length = 330 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 70/343 (20%), Positives = 138/343 (40%), Gaps = 29/343 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITATPCGVC 76 ++G+E ++ + S HAY+F G +G+GK IA+ AK + C Sbjct: 10 ILGRESLVEYMKTAASKEEFSHAYIFEGEKGMGKLFIAKEFAKMILSCGKETDEE---RQ 66 Query: 77 DNCREIEQGRFVDLIEIDA--ASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSR 133 ++++ G D+I I+ + VE+ R L+ P G++KVY++ E ++ Sbjct: 67 IVYKQVDNGNSPDIIYIEPDKPTTISVEEIRTKLVGTSDIFPY-GKYKVYIVKEAEKMNE 125 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKT+EEPPE+V +L + + +L TI SRC+ +K + I+ L Sbjct: 126 QAQNALLKTIEEPPEYVIIILLSANKNRLLPTIRSRCVTLDIKPIAANIIKEYLI----- 180 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E+ + A+ + G++ A+ V V +L LD + + Sbjct: 181 ENYGVVDYVADMAAKFSAGNVGRAVRYACDEDFLEMKNV----VVKILRNLDKETITEEI 236 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 +++ E + + M+ + +++ + A + Sbjct: 237 ASIIN------------LEGYKKEIKDCIELMILWFRDLLVLKTTGDANKILFREEYRYL 284 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 E + I+ +++ +K L +E+ L+ Sbjct: 285 NEQIAKRNYSSIERALESMEKTKKRLDANVKFDTAIEIMLMYM 327 >UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=Chloroflexi (class) RepID=A7NRV6_ROSCS Length = 354 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 79/354 (22%), Positives = 135/354 (38%), Gaps = 46/354 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + L ++ R+ HAYL G GVGK +A LA+ LNCE PC C Sbjct: 10 MIGHEWAVEFLRRSIAGKRLAHAYLIGGPEGVGKALLALRLAQALNCERS-ALDPCLRCR 68 Query: 78 NCREIEQGRFVDLIEI------------DAASRT--KVEDTRDLLDNVQYAPARGRFKVY 123 C+ IE+G D+ DAA + K++ R+ ++ P GR +V+ Sbjct: 69 ACQRIERGNHPDVRIAGMATQAAGAKSDDAARQKELKIDTVREWQRDMMLKPYEGRRRVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++ + L+ + NA+LKTLEEPP + +L L TI+SRC L+ L Q+ Sbjct: 129 ILHDAEKLNESASNAMLKTLEEPPPYATIVLVAHTVGSLLPTIVSRCQLLRLRPLPRAQV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L E +LLA + G + AL + D + ++ +L Sbjct: 189 AAALR-----EKRNLAAGDAELLAAWSGGRIGWALRMVDTPDELAARR---DQLAELLAL 240 Query: 244 LDDDQALSL------VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 D A L +A + V ++ + + Sbjct: 241 ADQPLATRLRWAEEQAKAYRAGDQTAVFETLDLWQ--------------SWWRDVLLTAA 286 Query: 298 S-PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 P A+ + + A D+ + + + + L + ++ +E Sbjct: 287 GCPQAVVHI--DRRDELVAAAAQHTVPDLHAFVSGIALAAQRLRDNVNPQLALE 338 >UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIX9_ACIFE Length = 356 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 79/365 (21%), Positives = 134/365 (36%), Gaps = 42/365 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L+ R + LF G G+GK +AR A+ C PC Sbjct: 13 WESIIGHETNKIFLKNMLTGERQTPSLLFCGPEGIGKKKMARAFARSFLCLEDP-LVPC- 70 Query: 75 VCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +C+ ++ G D I+++ + V+ L + P FKV LIDE H + Sbjct: 71 HCRSCQAMDNGSHQDFIQVEPGGKSRTIGVDAIHQLAASAALGPVLSPFKVCLIDEAHTM 130 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP++ F+L D +KL TI SR ++ L +E LE I Sbjct: 131 REEAQNSLLKLLEEPPDYWLFILVADDREKLLPTIRSRVMELRFDPLSMEDTERVLETIR 190 Query: 192 NEEHIAHE--------------PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +E+ E L +LAR A GS AL D + + Sbjct: 191 LQENDRPESLKDAELSQAEARWREQLPILARLAGGSAGKALE-----WFRLDALTLREEI 245 Query: 238 SAMLGTLDDDQALSLVEAM---VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 ++ + L + + ++ + + + L+ + Sbjct: 246 LDLVEQAGREDILVYADGLPWMLKNDRQESLVLMELLLLL--------------FRDGLI 291 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + + R+ ++ + R+ + RRM VE L Sbjct: 292 L-ETGLSQPLYNEDLRQRLAMCFAGWTEGMLRKGLELEEKCRRAIASFVTRRMAVEALAL 350 Query: 355 RALAF 359 Sbjct: 351 EIHQM 355 >UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8T4_MAGSM Length = 343 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 138/363 (38%), Gaps = 45/363 (12%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--- 70 F ++GQ+ + AL + GR+ H LF G GVGK AR L + C+ Sbjct: 3 RFEQIMGQQEAMDALTGAVRTGRLAHGLLFYGPAGVGKRLTARALVRRTLCQQVAEGALN 62 Query: 71 -------TPCGVCDNCREIEQGRFVDLIEID---AASRTKVEDTRDLLDNVQYAPARGRF 120 CGVC +C+ +E G DL+ ++ +R +V+ R+L V P + Sbjct: 63 AAGDRLLDGCGVCASCKRVEGGGHPDLLWMEKEQGRTRLRVDQIRELAQFVALTPLLSPY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDEV +++ + NALLKTLEEPP H +L T P L TI SRC LD Sbjct: 123 KVAVIDEVSLMNASAANALLKTLEEPPPHSLLILTTCTPGALLPTIRSRCQAVRFVPLDE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L H + EP ++ A GS+ AL L D + + Q + Sbjct: 183 QTLGQLLRQ-----HTSLEPGMVESAMEMAGGSIGRALELCDGTLLNQR-----QELWQG 232 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL-LHRIAMVQLSP 299 L L L V M G + E + L P Sbjct: 233 LVLLQRGAGLDTVCEMAAQWGSA-----ERFENTVMLLEFWFQNHIRASLRD-----YDP 282 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ A LA+ + R + +R + +E +R Sbjct: 283 SVNQQELQASNRAWLSLAQQFAC--------MVDEARI---FNLNRPLMLEHLFIRISRL 331 Query: 360 HPR 362 + Sbjct: 332 ATQ 334 >UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bacteria RepID=Q1J621_STRPF Length = 135 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 64/125 (51%), Positives = 82/125 (65%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDE 127 Y+IDE Sbjct: 122 YIIDE 126 >UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=Anaeromyxobacter RepID=Q2IQK6_ANADE Length = 370 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 156/370 (42%), Gaps = 40/370 (10%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P F++++ QE + +L + L G +HHAYLF G G GK A LLA+ NCE G Sbjct: 7 PMPFSELIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAALLLAQAANCEGGQAGP 66 Query: 71 -----TPCGVCDNCREIEQGRFVDLIEID------------------AASRTKVEDTRDL 107 PCG C CR+IE+G D++ + + V+ RDL Sbjct: 67 GGLREDPCGACGPCRKIERGLHPDVVVLAEERTMAKAGRWEPKSGRAPSKDIVVDQVRDL 126 Query: 108 LD-NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 +D + GR + +ID ++ + NALLKTLEEPPE +L + P L TI Sbjct: 127 VDHRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDALLPTI 186 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRCL+ + L + + +L+ EE + E ++ A + GSL A +A A Sbjct: 187 RSRCLRVSFRPLPADAVAARLQ----EEGVPAEE--ARVAAALSGGSLGRA-----RAHA 235 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWE-ALLVE 284 + +AV+ DD L A + + + A E + Sbjct: 236 GDAARRPLRAVAQAAALRPDDAGAWLAWAADPGADPAQARGKDRDRKAEVKELAPEICEL 295 Query: 285 MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 ML L + VQ L +A +E R A +PP ++ +L + L Sbjct: 296 MLVWLRDVLAVQAGAGRLA--VADLEPVTRRAAAALPPGEVVRRRGEVLRTLRALRQNAT 353 Query: 345 RRMGVEMTLL 354 ++ +E ++ Sbjct: 354 SQLALERLMI 363 >UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4ECY2_9ACTN Length = 375 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 141/365 (38%), Gaps = 40/365 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE V L N ++ GR HAYLF G G GK A LA+ CE CG CD+C Sbjct: 15 QERVRDFLTNAVASGRASHAYLFLGAPGAGKLDAAWALAQAFLCEQ----DGCGACDSCV 70 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LLD+V AP R + KVY+ID L ++ NA Sbjct: 71 RVARHTHPDVHYYTPESATGYLIAQTRELLDDVPLAPIRAKAKVYIIDRAEQLRANTANA 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----- 193 LLKTLEEPPE V F+L T + TI+SRC + + + + Sbjct: 131 LLKTLEEPPEGVMFILLGTSADVMLPTIVSRCQCVPFRLVSPTVAARAVSRATGQDLARC 190 Query: 194 -----------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I A + AR R + D IA+ + V ++A S ++ Sbjct: 191 RMAVAVAGSPTRGIEFLKSAERQDAR------RQMVRAIDSLIAADEADVLSRAKSLIVA 244 Query: 243 T-LDDDQALSLVEAMVEANGE----RVMALINEAAARGIEWEA---LLVEMLG---LLHR 291 + S E ++E N + + + + R + ++ + L+ Sbjct: 245 VKAPLAEVKSTQEKVLEQNADYLSRGALKQLEDRNKRELNARERSGIMEALASARTLMRD 304 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 + + L A + + LA + + + + ++ +E+ Sbjct: 305 VLLT-LQDEAADVVNEDVRDTIGRLAAATNVAGATRALEAVATAERNIARNVTPQLAIEV 363 Query: 352 TLLRA 356 L Sbjct: 364 MLFDI 368 >UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacillus cereus group RepID=B7IZB6_BACC2 Length = 326 Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 123/340 (36%), Gaps = 30/340 (8%) Query: 13 QTFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 T+ ++ Q V L N + + HAY++ G +G+GK +A L AK L C G + Sbjct: 1 MTWNELQDVQPKVARILQNSIRKEMVAHAYIYEGNKGIGKYQVALLYAKTLLCNNGSNSE 60 Query: 72 PCGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 PC C NC I+ G D+I I D AS K E +L YA K+Y+I+ Sbjct: 61 PCHACKNCTRIDTGNHPDIIYIKPDGAS-IKKEQIEELQKEFSYASFESGKKIYIIENAE 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ ++ N+LLK LEEP +L T L TI+SRC + ++++ L Sbjct: 120 KMTTNAANSLLKFLEEPESDCIAILLTERSNALLSTIISRCQLIRFAPISPKKVQEALT- 178 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E + A ++L++ L A ++++ + + + Sbjct: 179 ----EQLIFGEEA-KILSKLTN-DLEQARKISEELTLGPKLDLIQEFIQKCNTLKVYALK 232 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L EA G + I ++ L+ ND+ Sbjct: 233 KELSEAFAGKEGTLIFYHI----------------VMLWFEDFLNYHLN---RRNDLVFN 273 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 E + + I + + + Sbjct: 274 EEILDTEVKKYKLNQILHLIKCAQKYQGRVHNNLTFTTLF 313 >UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XBX7_9BACT Length = 344 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 24/355 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D Q+ +T L L GR+ H YLFSG ++AR LAK LNC+ + P Sbjct: 1 MSFKDFPEQKQPVTLLQRSLERGRLAHGYLFSGHSLGELEALARTLAKTLNCQEPVRLVP 60 Query: 73 -------CGVCDNCREIEQGRFVDLIEIDAASRTKV---EDTRDLLDNVQYAPARGRFKV 122 C C NCR+I+ D+ + S+++V + RDL+ + P +KV Sbjct: 61 GGPAVDCCDKCVNCRKIDAENHADVHWVRPESKSRVVTIDQMRDLMQEINLKPNEAEYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +I L+ + NA LKTLEEPP +L TT+PQK+ TILSRCL+ + + Sbjct: 121 AVIVAADRLNVQAANAFLKTLEEPPAKSILVLLTTEPQKILETILSRCLRLNFAGEGNKA 180 Query: 183 I-RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + Q+E + +A E + L G R L G++ + A+ Sbjct: 181 LAAAQMEWLRAFSELAAEEQKSLL------GRYRLLGVLLKTL-----GELKEEIEKALT 229 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 ++ L + + E + A I A ++ +L + L + + + Sbjct: 230 ARSPLERYDDLDPKLRDRWEEELSAAIE--AEYRLQRADVLGLLQWWLRDVWLRTMPLEG 287 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++A+ I Q L ++ L + +E+ LL Sbjct: 288 AELLSFPELPTAAQVAKRISSEQAIKNLQVLERMQRLLGSNVQEALALEVGLLEL 342 >UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=Coriobacteriaceae RepID=C8WG75_EGGLE Length = 383 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 126/375 (33%), Gaps = 40/375 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE---TGITAT 71 F +++GQ V L ++ G++ HAYLF+G G KT A A+ + C +G Sbjct: 5 FENILGQPQVREFLRATVAQGKVSHAYLFTGPAGSNKTMAAYAFAQAVLCPKGASGPRGG 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG CD CR I + + D+ VE RD++ + AP + KVY++D V Sbjct: 65 NCGACDACRRIMRKKHPDVRYFAPEGAGGYLVEQIRDIVADTSMAPIQAHKKVYILDRVD 124 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L + NA LKTLEEPP V +L + + TILSRC + + + + Sbjct: 125 LLGVQAANAFLKTLEEPPSDVVLILLARTRESVLPTILSRCQVVPFRTIPASEAAGIIVQ 184 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--------VSTQAVSAML 241 + ++ A +GS+ A+ + + Sbjct: 185 -----NTGASREQARMAVEACDGSITRAVEFLKSNERLAFRTRVLEVLGCLRKADDWDAV 239 Query: 242 GTLDDDQA-----LSLVEAMVEANGER-----VMALINEAAARGI---------EWEALL 282 G + L + A E + I + AR L Sbjct: 240 GFASELVVLVKAPLDVARAEQEQELAENADFLAKSAIRQIEARNKRQLTAKTFESLRQLT 299 Query: 283 VEMLGLLHRIA-MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 + L + + +P + E A + + + Y Sbjct: 300 AIVRSWLRDVMAVCAETPE--LVINVDARASVMEAAEATDEARAAAALAAVRRCDEAISY 357 Query: 342 APDRRMGVEMTLLRA 356 ++ L Sbjct: 358 NVSPETCIDAMLFEI 372 >UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium RepID=C8W7S8_ATOPD Length = 389 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 142/388 (36%), Gaps = 48/388 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 PQ + Q V LA L ++ HAYLF G G GK A+ LA+ + C G A Sbjct: 16 PQALTRLQDQPQVQNLLARALHEHKLGHAYLFVGAPGSGKGLAAKALAQCVLCAQGGDA- 74 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CD+C I +G D+ + AS +E R L +V AP R K+Y+ID Sbjct: 75 ---ACDDCIRISRGTHPDVHVLTPASANGYLIEQIRQLTADVSLAPMRSTHKIYVIDRAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L +S NALLKT+EEPP F+L+ + TI+SRC + L Sbjct: 132 LLRENSANALLKTIEEPPADTIFILSARSSSAVLPTIVSRCQVVAFRTLTDAV-----AK 186 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 I+ + + +A AA G+ A+ +S + Q + + G L + + Sbjct: 187 AAIMREISATEQEAR-IALAATGTPSRAVEFLQ---SSTRKNIRRQLI-DVFGNLLRNDS 241 Query: 250 LSLV----------------------EAMVEAN---GERVMALINEAAARGIEWE----- 279 ++ EA+ ++ + + A R + Sbjct: 242 WDVLISAKELIEAAKIPLGDVKRAQEEALAQSEDFLTSAALKQVEAANKRELTARERSGI 301 Query: 280 -ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 +L + LL + + + + +A + + + Sbjct: 302 IEMLAILESLLRDVLLCCEAIDE-EIVNTDAAGIIDRVASQTHTQGVLGALAAVQEAQNN 360 Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLP 366 L + ++ +E+ LL PL Sbjct: 361 LDRSVSPQLTLEVMLLHIKEALTCPPLS 388 >UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacillaceae RepID=HOLB_BACSU Length = 329 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 130/340 (38%), Gaps = 29/340 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L N + R+ HAYLF G +G GK A LLAK C G A PC C NC+ Sbjct: 12 QPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLDAALLLAKSFFCLEG-GAEPCESCRNCK 70 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G DL + K + L + K+Y+I ++ ++ N+L Sbjct: 71 RIESGNHPDLHLVQPDGLSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAANSL 130 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP + +L T PQ+L TI+SRC + L + I +L Sbjct: 131 LKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQPKAIEDRLIE------QDVS 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P +LLA ++ +A+ L+ + + + L E + + Sbjct: 185 PHMARLLANMTN-NVAEAVELSRNDEFAE----------------SRAKVIKLYEVLHQR 227 Query: 260 NGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 G + ++ E E L +L + + +Q+ + +++ Sbjct: 228 KGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKL-IYQDLFQSIKQH 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A + +L +K L + + +E +L Sbjct: 287 ALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLML 326 >UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNL7_9BACT Length = 290 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 17/278 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G N L+ ++HHAY+FSG G GK AR LA+ + C + PC C Sbjct: 2 IIGHGKEKDIFRNILTGDKLHHAYIFSGREGSGKKMFARELARAVICAEQVFMEPC-QCR 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +C+ D+ ++ S K+E R + + +P R KVY+ID H ++ + N Sbjct: 61 HCKVAAASDHPDIHVLE-ESPVKIEVARRIAGDAFMSPLSARKKVYIIDNAHTFTKEAAN 119 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A+LKTLEEPP F L T +++ TI SRC+ L E++ E +L + + Sbjct: 120 AILKTLEEPPADTHFFLITDKYEQVLPTIRSRCINMRFSNLTNEEV----EKVLLSQGVM 175 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ---AVSAMLGTLDDDQALSLVE 254 L +A A GS+ A+ L D A +G + + G ++ + Sbjct: 176 --NDMLPEIAAQASGSVSYAMFLLDNAEETGRFAPDRDKNSLFAEIHGLDTKEKIRAYCA 233 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 +M L+ + +L +L R+ Sbjct: 234 SMY------AYMLVKYKESEDETLLDFSNYLLEILRRL 265 >UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiaceae RepID=A4SFZ4_PROVI Length = 391 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 63/381 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-- 70 ++ V+GQ+ + L + L GR+ HAYLF+G G GK +A LAK L+C + T+ Sbjct: 1 MSWNTVIGQQQQVRVLRSALLGGRLAHAYLFTGPDGAGKEMVAFELAKALSCTSSGTSPE 60 Query: 71 TPCGVCDNCREIEQGRFVDLIE-------------------------------------- 92 CG+C +CRE+E ++ Sbjct: 61 GACGLCADCREMEALLHPNVEYLFPVESALLEGSDSPKKDNRKFTEAKERYDTLLEQKKA 120 Query: 93 -------IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 +D + E L + P G KV++I + L + N LLK LEE Sbjct: 121 NPYFTPCMDRSMGILTEQVIQLQQKASFMPREGSRKVFIISQADRLHPSAANKLLKLLEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP H+ F+L ++ P+ L TI SRC + + + ++R + E+ P + Sbjct: 181 PPPHILFILVSSRPESLLPTIRSRCQEIIFQRIPERELRSWM----EEQRTDIAPDERES 236 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV-EANGERV 264 + +A+ GSLR A L + G +AL + +++ + + Sbjct: 237 IVKASRGSLRRAWELMLNRMEPGFEPAEKAI---------RTKALDYLRSILMAGHFHKA 287 Query: 265 MALINEAAA--RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + E E + +L L ++PA + I + AR P Sbjct: 288 ILSAEEQTKNLSRQELILFISSILLFLQDAMHRSINPAFANLNNPDIADAVDRFARNFPN 347 Query: 323 TDIQLYYQTLLIGRKELPYAP 343 D+ + L Sbjct: 348 PDLMAISTLAEESIRSLERNA 368 >UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ16_THEYD Length = 319 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 126/339 (37%), Gaps = 45/339 (13%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ QE + L L +I +A LF G +GKTS A AK LNC Sbjct: 1 MGFNKIISQEKAIKLLKGTLRTKKIPNALLFLGDAYIGKTSTAIAYAKALNCLNSENEDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C CD+C++IEQ D+ I V R++ + V P G++KV +I E H + Sbjct: 61 CDSCDSCKKIEQRLHPDIKIIAPEKDVITVNTIREVEEFVSLKPLEGKYKVVIIKEAHKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA LKT+EEPP +L + LP ++SRC + + L ++ I+ + + Sbjct: 121 NNAAANAFLKTVEEPPFMTTIILICENIHNLPEPLISRCFKVYFTPLSIDAIKKIIPD-M 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 +E + I G ++ + D + Sbjct: 180 QQES-------------------------FFRIIMGKPGLFMSRDILK-----DIQWFSA 209 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQLSPAALGNDMAAI 309 ++ + E N + + E + + L ++ + + Sbjct: 210 TLKNIKENNKKAIWKDNEEIKW-------WIDFLCIFLRDSLIKLINKVSSDCCLILPLD 262 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 +L I +I Y+ + ++ + ++ + Sbjct: 263 F----KLKENISVQEIFNLYEEVQNIKRNIDLNLNKSIL 297 >UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WSU8_LACS1 Length = 330 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 137/341 (40%), Gaps = 30/341 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + A + ++ HAYL SG G GK +A+ +AKG+ C PC C C Sbjct: 9 QPFLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECN 68 Query: 81 EIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 IE D++ I D S KVE R L + KV++I + +S + N+ Sbjct: 69 RIENNNHPDVVTIMPDGLS-IKVEQIRYLKSEFNKSGVESDRKVFIIQDAQKMSIGAANS 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP ++ L T++PQKL TI+SRC + ++ L QLE L E I+ Sbjct: 128 LLKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLT----SGQLEQELISEGIS- 182 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + +LA A+ S+ +A + D + + +L T++ + ++ Sbjct: 183 -EKNSHILANLAQ-SVVEAKKINDN-----------ENFNKILATVN-----NWYRKLLR 224 Query: 259 ANGERVMALINEA---AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + ++ + +L ++ + + + +++ Sbjct: 225 KDLLSFVMIQSKIIGLIQNKEDQNLVLQVIILTVRDTVLERF-GLTEEIVFKENIDFIQQ 283 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 I + + ++ ++L + +E L Sbjct: 284 NTAQIANSKLVNGLNLVVESNRKLASNISMQNMLETLTLNL 324 >UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C36A8 Length = 338 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 130/342 (38%), Gaps = 20/342 (5%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT 71 ++ + GQ A L GR+ H+YL G GVGK AR LAK CE T Sbjct: 1 MSWDRIRGQHAPRNTFAAALEAGRLAHSYLLVGPDGVGKRQFARELAKAFLCEHPPAKLT 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRT---KVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 C C C ++ G DL+ + V++ R + P RG K+ ++++ Sbjct: 61 ACDRCPACAQVNVGTHPDLLFLRTPEDKHELPVDEMRAFCAQIALKPTRGPRKIGIVEDA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N+ LKTLEEPP+ LL T + TILSRC L L+ Sbjct: 121 DDFNASSANSFLKTLEEPPQGALLLLIGTSIDRQLSTILSRCQIVRFAPLSPAD----LK 176 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +L E+ I +P LA+ GS+ AL+L D +I ++ +S Sbjct: 177 AVLAEQGID-DPVKRDRLAKLGAGSVTRALALDDDSIWQVRQKLLEGLMS------PRPP 229 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L + N E + + +L ++ + + L AA+ AA Sbjct: 230 FQQLADVWARFNEEAGKETAPQRLRTSL----VLQFLIEAVQNALKLSL-GAAVPELDAA 284 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 +R A I + L+ + + VE Sbjct: 285 EAPLLRAFADRIGAAGLMELLDALVEADFHVERRVQLILIVE 326 >UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LSD1_9FIRM Length = 336 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 135/350 (38%), Gaps = 34/350 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ DV+G E + L L GR+ HA LFSG GVGK +ARLLA L C G PC Sbjct: 6 SWKDVLGHEGNIHRLRTMLRDGRLPHALLFSGISGVGKKKVARLLAAALLC--GREDAPC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTK------VEDTRDLLDNVQYAPARGRFKVYLIDE 127 GVC +CR G D +E SR K ++ R++ P V L+D+ Sbjct: 64 GVCPSCRAFLAGTHSDYVEAAPESRGKGVRVLRIDAVREIEKKAARKPLLSGRFVVLVDD 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V FLL T L TILSR H AL E I L Sbjct: 124 ADAMNEAAANSLLKTLEEPQGAVFFLLVTAKRTALLPTILSRVRDMHFGALSPEGIEEAL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 E R LA AA+GSL AL L + G Q+ A + Sbjct: 184 LA------RGVESRKAHSLAMAADGSLGHALLLFE----GGGLQLMEDAAQTLF------ 227 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ N + A E + E L+ + LL + + L Sbjct: 228 -------SLSALNMFSLWAKAEELGKLPRDRAEEWLLALSRLLRDMLALLSGRGRL--YH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + P T I + L ++ E L+R Sbjct: 279 EEKRGDLAHALADFPETHIFACLALVRETLGRLRSNASVQLLFEGLLMRL 328 >UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CMJ4_METED Length = 806 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 97/423 (22%), Positives = 174/423 (41%), Gaps = 18/423 (4%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 A +RP TF V GQ+ V+ L+ ++ GRI + L G G GKT++AR+ A+ LNCE Sbjct: 100 FADAYRPHTFKKVFGQDSVVACLSGLIARGRIGRSILLHGAVGSGKTTLARIYARALNCE 159 Query: 66 TG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-RFKVY 123 A+PC C+ C + + + E + + R + + + P G ++++ Sbjct: 160 APDPRASPCYACEACGRLGEKPIKEFEEYNVSRRGGGREDVERFLSTHDRPVHGAKYRIL 219 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 DE H L+R + + LL +E P ++F+ ATT+ ++L + SR L ++ L V++ Sbjct: 220 FFDEAHALTREACDLLLLPVESPQHAIRFIFATTEAERLRRALRSRLLDLLIRPLPVDRA 279 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + IAHEP AL LLA EG RD L ++ +++ V A Sbjct: 280 IEFLRQAAEKIGIAHEPGALALLAGLREGYPRDLLLGLERVWERNTPRLTVAQVRAAFDV 339 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-------HRIAMVQ 296 + ++ A+ + + ++ ++ + + + L + R+ + Sbjct: 340 DQTEVLVAYFTALADGDPDQQAEIVFGWQEQATDKIRWIQAFLLHVYHNEILARRLVVDG 399 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV-EMTL-L 354 + A N A I D+ ++ R+ + + P E L L Sbjct: 400 VIEAVPENLRAGIVRGFCARLGLADARDLAPFW------RQMMAFWPVPETATDETALGL 453 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R FH ++ E + PT A + PLP ++V+A Sbjct: 454 RLTLFH-QLVNAGVEGEAVAAERARPTDAAAAIAQASTIAEASRGFGPPPLPRPGARVVA 512 Query: 415 ARQ 417 + Sbjct: 513 DKA 515 >UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZZ4_9PLAN Length = 353 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 18/233 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PC 73 + G +L L LS R+ HA LFSG G+GK +A LA+ L C C Sbjct: 6 DSIRGHHPILEMLDRALSRSRLPHALLFSGAAGIGKKRVALHLAQCLFCLQTPADELSCC 65 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKV--------EDTRDLLDNVQY----APARGRFK 121 CD+C+++ G DLI I+ + +D + V Y P G + Sbjct: 66 RTCDSCKQMAAGTHPDLISIECPPDKNILPLSLIIGDDDHRGREGVCYEMSLRPMVGDRR 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +ID+ ++ S NALLKTLEEP + +L ++ + TI SRC L E Sbjct: 126 IAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLIRFNRLTQE 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + L ++++ + E +A++ +AR + GSL A L D+ + S G ++ Sbjct: 186 DVAALL---IDQQLVESEDQAIE-IARLSAGSLNIARQLLDENLQSLRGNITR 234 >UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9REP7_PHYPA Length = 366 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 4/274 (1%) Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P R+KV +++ +L+ +NA L LEEPP+ V F+L TTD +++P T SRC Sbjct: 3 SLKPH-ARYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQ 61 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 +FH + I +LE++ +E + E AL L+A ++GSLRDA+ L DQ D Sbjct: 62 KFHFSKVSEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQV-CLLDKN 120 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 VS V + G ++ L L++ + A+ + + E A +E L+ ++ GL+ Sbjct: 121 VSVDLVREVGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITD 180 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 I L R + + ++ + L +L A D+ + Sbjct: 181 ILAGSLEVDRGS--RKDGSFFNRNFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTA 238 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 LL+ +P + A + Sbjct: 239 ALLQFAPDRSFLPSEASTDVALTSARPSTKTSEP 272 >UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBK8_9ACTN Length = 381 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 142/366 (38%), Gaps = 38/366 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V LA ++ GR HAYLF G+ G GK A LA+ L C + C CD+C Sbjct: 17 QPRVRDFLARAVTSGRASHAYLFLGSPGSGKLDAAWALAQALLCGEDGVSGACASCDDCG 76 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LL++V AP R + KVY++D L ++ NA Sbjct: 77 RVARRTHPDVHYFAPESATGYLIAQTRELLEDVALAPIRAKAKVYIVDRAEQLRANTANA 136 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP V F+L + + TI+SRC + L +E +EH Sbjct: 137 LLKTLEEPPAGVTFILLGSSADAMLPTIVSRCQCVPFRPLSLEDAATAVEHAT-----GL 191 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV----- 253 ++ A GS A+ + +AV +L D+ L+ Sbjct: 192 PAGKCRMAVAVA-GSPARAVEFLKSGDRQTARRAMVRAV-DLLAHADEADILAAAKDLMG 249 Query: 254 -------------EAMVEANGE----RVMALINEAAARGIEWEA---LLVEML---GLLH 290 +A++E N + + + + R + ++ + LL Sbjct: 250 AIKAPLAEVKSTQQAVLEQNQDYLSRGALKQLEDRNKRELNARERSGIMEALASVRSLLR 309 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + +L+ + + + +A + T + + + ++ +E Sbjct: 310 DALV-RLASESEPVVNEDVSDVVERIAARVTVTGVTRALDAVSSAEARIARNVTPQLAIE 368 Query: 351 MTLLRA 356 + L Sbjct: 369 VMLFDI 374 >UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=Enterococcus RepID=C7D0N7_ENTFA Length = 324 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 119/340 (35%), Gaps = 43/340 (12%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L GR+ HAYLF G G GK +AK + C + PC C NC I + Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQQPCNECHNCVRINEN 83 Query: 86 RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D++ I + KV R+L + KV+LI E +S + N+LLK LE Sbjct: 84 EHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEADKMSTGAANSLLKFLE 143 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP + +L TT ++ TI SRC H + L + + +L ++ I + Sbjct: 144 EPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRL----IKQGIG--EKTAI 197 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 LLA S A+ ++ + ++ L + + + Sbjct: 198 LLAELTN-SFEKAVEISQDEWFNEAREI----------------ILQWFNYLKSNDLQAF 240 Query: 265 MALINEAAARGIEWEA---LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + + E E ++ ++ E + A+ + Sbjct: 241 IYVQKKMVKVFKEKEQQALSFDLLMVYYRQLL---------------EESVATQQAKKVT 285 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + +L R++ + E +++ + Sbjct: 286 EEQAER-LALILKARQKWTANVSWQNVCEQLVIQMIHPKS 324 >UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI37_DESAH Length = 345 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 124/339 (36%), Gaps = 19/339 (5%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC--ETGITATPCGVCDNCREIEQG 85 L L+ +I +A LF G +GK A A+ LNC E C C +C++I Sbjct: 23 LVALLATLKIPNALLFVGNPDLGKVETALAFARALNCQGEKRNDGLACDQCRSCKKILSS 82 Query: 86 RFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D+I + R K+ R++ ++ P +F++ LI ++ + NALLK LE Sbjct: 83 MHPDIICVAPVKERIKISQIREIYGQIKAKPHEAKFRMVLIQGAEAMNPEASNALLKILE 142 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPPE F+L T L TILSRC Q +D +I L + Sbjct: 143 EPPERTFFILTTERTDGLLPTILSRCRQVTFSPMDQGKIEQILVR-----DHGIDTTTAG 197 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 + A ++GSL+ AL T + + ++ + AN Sbjct: 198 IAASWSQGSLQKALKFTGIVKSDDTTDWPERRRW---------MITAISTLIRGANPGVA 248 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + L + L + + + + + + + + + E I Sbjct: 249 LLLAEKINQNPELLGGTLAILESFFRDMVVFKYNTEKI--INSDFQTLLTETDSGISTQR 306 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + L K++ R+ +E L + + Sbjct: 307 VLSWITELHHVEKKIKANAGIRLTLEAFLFKLIPARQLA 345 >UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03SS1_LACBA Length = 337 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 125/346 (36%), Gaps = 28/346 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++T L + R+ HAYLF+G G G+ +A+ +A L C+ PCG C CR Sbjct: 14 QPQLVTHLMTLIKTKRLAHAYLFNGADGTGRQQVAQTVAMRLFCQNVTDNLPCGQCSECR 73 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D++ + R KV+ R L + G K++++D+V ++ + N+L Sbjct: 74 RILAGDHPDVVSVVPDGQRIKVDQVRYLKAEFTKSAVEGNQKIFIVDQVERMTTGAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP + LL T + + TILSR + + + L I Sbjct: 134 LKFIEEPVGNTVALLLTANKNLILPTILSRTQIVDFLRVAPQALLTALADA----GITP- 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 S R L+ +++ + V + A Sbjct: 189 -------------SQRYLLTTLTESVTAAQDLVVDDWLKDA-----QQAVGQWFSACCTG 230 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRE 315 + + + E + + LL ++ H Q + A + ++ Sbjct: 231 DERAFVRVQTELVPLALNRDRQGVLLDMVVQAWHDALRQQNATLEAASLAFPKVAQASQQ 290 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +A+ + + L R +L + + +E L L Sbjct: 291 VAQRLSIDQLVRVMTLTLATRGQLAGNLNFQAILEALTLEILTITA 336 >UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, holB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCA3_PARUW Length = 369 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 74/378 (19%), Positives = 140/378 (37%), Gaps = 47/378 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P +F+ +VG + + L L I ++ LF+G GVGK A LA L CE Sbjct: 5 PSSFSFLVGNDPIKIYLQRMLIKKAIGNSLLFAGPNGVGKGLFAYALASQLICEQEEKNK 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 +IE G D+ + ++ R+L + V P +K+++I + Sbjct: 65 --------YKIENGLHPDIHIYRPEGKLGLHGIQSLRELSEEVHLPPYEASWKIFIIHDA 116 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N LLKT EEPP +L + L TI+SRC H + + +I L Sbjct: 117 ERMLSVSANTLLKTFEEPPPKTVIILLSQSQAALLPTIVSRCRTLHFQPIHASEIEKVLV 176 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E + E Q +A ++GSL A+ L + + ++ + L + Sbjct: 177 -----ERMYLETEFAQNIASLSQGSLGRAVQLIQK--KGDESRIFLLNTLSQLPLTSYKE 229 Query: 249 ALSLVEAMV-----------EANGERVMALINEAAARGI------------------EWE 279 +V +V E E + L +E + + E Sbjct: 230 FTQIVGELVAQIELSKKLFEEKAKEEFLKLFSEQLSTAHQQHLEKEIEGRCTQIFLQDVE 289 Query: 280 ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 +L ++ + ++QL+ + + ++ + +++ +++ R L Sbjct: 290 SLFDQLFAWYRDLHLLQLTQNKSLLIHSDYAESIEQILQRGNLLPLEIVQKSIEEARLSL 349 Query: 340 PYAPDRRMGVEMTLLRAL 357 + + +E L+ Sbjct: 350 QRSTSLNICLENLFLKLA 367 >UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNT7_CLOCL Length = 312 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/349 (17%), Positives = 124/349 (35%), Gaps = 47/349 (13%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR-----LLAKGLNCETG 67 F++++G E V L HA++ +G G GK+ +A+ +L+K + Sbjct: 1 MEFSNIIGNEEVKKQFVKNLEAKTFAHAHIIAGEDGSGKSLMAKSAAIKILSKSI----- 55 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 + D+IE + V+D R L++ P G KV +I Sbjct: 56 ----------------YQNYADIIEFKTSKASIGVDDIRVLIEETNKKPFEGDKKVIIIY 99 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 ++ NA LKT+EEPP+ V L + +K+ TI SRC L+ L E+++ Sbjct: 100 NAEKITVQGQNAFLKTIEEPPKGVFIFLLCENLEKILDTIKSRCQIHRLRRLSYEEMKLF 159 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L N ++I E L+A ++G ++ + + ++ G Sbjct: 160 LSK--NYKNIKAE-EMKPLIA-FSDGIPGRVEKYFTDDAFRNIRNITMEILISITG---- 211 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ + W+ +L + + + + + Sbjct: 212 ------------KEVYELLKYEEQLMKYKNYWQDVLSSFISYVRDALIYKETGDEQYIIN 259 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ + + + T+ + + + + +M LL+ Sbjct: 260 IDKIDEIKIITDSFSYNKLNKIIDTISYVKDNMQSNVNPSVTFDMMLLK 308 >UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJK0_9BACT Length = 409 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 142/390 (36%), Gaps = 63/390 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT 71 + DV+GQ + L + GR+ HA LF G GVGK +A LA L C Sbjct: 37 MKYDDVIGQAAIKARLRRQVVEGRVPHAQLFCGPTGVGKLPMALALASSLLCTNRTPEGD 96 Query: 72 PCGVCDNCREIEQGRFVDLIEI--------DAASRTKVEDTRD----------------- 106 PCG C C+ + + DL I ++S T +E R+ Sbjct: 97 PCGCCAGCKMVARYAHPDLHFIFPTIRKGSTSSSDTYLEAWRERLLTSPYFDNQDWLAAL 156 Query: 107 ----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 +++ + +G +KV ++ + +S N LLK LEEPP+ Sbjct: 157 QVENQQPTFYVADSNAVIEKLSLVANQGGYKVMIVWQADKMSVEVQNKLLKILEEPPQLT 216 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L T P++L TI SR + L ++ +L +P A + +A + Sbjct: 217 VFILLTDAPERLLPTIASRVQRIDFPLLPERLLQEELST-----RNHIDPTAARDIAHIS 271 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 GS AL + ML + +L+ + + + Sbjct: 272 NGSYVQAL-----------RHIGVDEEGEML----LENFKTLMRLCYMRKVKDLRDWSDV 316 Query: 271 AAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 AA G E + L L L+ + A+L + AA AR I +I+ Sbjct: 317 AAGWGRERQKRFLDYALKLVRENFIYNFRQASLNYETAAEAEFSVNFARFINERNIEDML 376 Query: 330 QTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 R+++ + RM T LR + Sbjct: 377 TLFTEARRDIAANVNARMVFFDTALRLIVL 406 >UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=Pediococcus RepID=Q03E62_PEDPA Length = 338 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 127/342 (37%), Gaps = 29/342 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + + HAYL +G G+GK +A+ +A L C + PCG C+ C Sbjct: 15 QPEIVKRFNEMIDSQHLSHAYLLTGAGGIGKKDVAQWVAMRLFCIDLQGSMPCGECEECT 74 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G+ D++EI + KVE R L + G KV++I++ + ++ + N+L Sbjct: 75 RIMSGQHPDVVEIAPDGQSIKVEQVRFLKSEFSKSGVEGARKVFIIEQANKMTTSAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP V L + + TI+SR LK L +++ +L E E Sbjct: 135 LKFIEEPSGEVTAFLLAENRSLMLPTIVSRTEIIELKPLPKDRLIKELT-----EQNIAE 189 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 A ++L R + + +L D Sbjct: 190 TDA-RILTRLTN-DMSEIQTLVDNNWILDA----------------HKALEKWFITATTG 231 Query: 260 NGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + + + A + E +L M+ + ++ + A +++EL Sbjct: 232 DITAFVDVQTRVMALAKDRFYQEKILDLMMLYAMDLLELKFDQETIT--YEANRRQLQEL 289 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + LL + +L + + VE ++ Sbjct: 290 ADQTNVRQLLAVADVLLPLKHQLSQNLNFQSVVEKATIKICN 331 >UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax=Actinomycetales RepID=C7MQK6_SACVD Length = 406 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 140/401 (34%), Gaps = 73/401 (18%) Query: 13 QTFADVVGQEHVLTALANG------LSLGR------IHHAYLFSGTRGVGKTSIARLLAK 60 + ++ +VGQE + L+ L GR + HA+LF+G G G++ AR A Sbjct: 13 RVWSQLVGQEPAVETLSAAAESAAALVSGRTTDPGSMTHAWLFTGPPGSGRSVAARTFAA 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 119 L C CG C C G D+ + V + R L+ P GR Sbjct: 73 ALQCTVDAG---CGRCQGCHTTLAGTHADVKLVVPEGLSISVSEMRALVQAAARRPTTGR 129 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 +++ +I++ L+ + NALLK +EEPPE FLL P + +TI SRC +L+ Sbjct: 130 WQIVIIEDADRLTEGASNALLKAVEEPPERTVFLLCAPSDHPDDISITIRSRCRTVNLRT 189 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 E I L E +P + A G + A L + + AV Sbjct: 190 PSPEAIATVLV-----ERDGIDPERARWAASVCGGHVGRARRLATD----ENARARRAAV 240 Query: 238 SAM-LGTLDDDQALSLVEAM---VEANGERVMALINEAAARGI----------------- 276 + LG + + + EA+ V +EA + Sbjct: 241 LRIPLGLRRAEDVFRCADELISTAEADATEVSKARDEAEQDALRTAMGSGGTGKGVAAAK 300 Query: 277 ------------------------EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + L+++ G + ++ A N + + Sbjct: 301 RAADAAVRALEKKQKSRATRTQRDTLDLALMDLAGFYRDVLVLSSGSDAALN-HPDVAEQ 359 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 E AR P + +L R + + R+ VE L Sbjct: 360 AAEAAREWTPVSTLRRLEAVLACRDAIAWNVKPRVAVEAML 400 >UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZYH4_9PLAN Length = 357 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 123/346 (35%), Gaps = 28/346 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 ++ ++ G + V ++ GR+ +LF G VGK A LA+ L CE A Sbjct: 1 MSWDEIQGHDAVQAKFRTAVARGRLASTFLFVGPPAVGKRKFALKLAEALLCEVNPPADL 60 Query: 72 -PCGVCDNCREIEQGRFVDLIEI-DAASRTKV----------EDTRD-LLDNVQYAPARG 118 PCG C++C ++ DLI + A+RT++ R L ++ P RG Sbjct: 61 NPCGKCESCVQVRAHSHPDLILVSRPANRTRIPVDLLIGDGQNRMRAGLCHDITLRPYRG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 KV +ID+ L+ N LLKTLEEPP +L +T Q+ TI SR L Sbjct: 121 GRKVAIIDDADYLNVEGANCLLKTLEEPPPKSVMILLSTSLQRQLPTIRSRSQIIRFDPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L E+ + E ++LA GSL A+ + D + + + + Sbjct: 181 SNEVIAALL----VEQGVVAELEEARVLAELGHGSLERAMQVADPELREFRAVLLPRLGT 236 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++ + E + A E E L R + Sbjct: 237 PDFPSVPLAK--ETAEFVDRAGKEAPPRRARLIL-----VMQFAAEFYEQLMRALCGRAV 289 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 R A P + +E+ + Sbjct: 290 AGDDLLRKQVERAVPRFTA---GPDAAAACLARCIEAEQEVEANAN 332 >UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus plantarum RepID=C6VLN8_LACPJ Length = 339 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 123/340 (36%), Gaps = 27/340 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q +L A + ++ + HAYLF+G G G+ +A +A+ L C P G C+ C Sbjct: 15 QPRLLAAFKHIIAQNHLAHAYLFAGMEGAGQPELAHWIAQRLFCLHINDGEPDGTCEECV 74 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D++ + R V+ R L + G K+++I++ ++ + N+L Sbjct: 75 RIANGSHPDIVTVAPEGQRIHVDQVRYLKAEFSKSAVEGNRKLFIINDAEKMTASAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V LL TT+ Q + TI+SR L+ + ++ E Sbjct: 135 LKFIEEPSGNVTALLLTTNKQLMLPTIISRTQVIEFPPLNAQALQQ------TFEQAGIA 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P Q+L S+ A +L + V+ Sbjct: 189 PNQAQMLRGLTN-SVTQAQALLADDWLPQAA----------------QALWRWFDQAVKG 231 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + +A+ + + +L + L + + A + + L Sbjct: 232 DPRSFVAVQVNLVGLAKDADHQLVMLDLIAALFQDLLQLHFEVATTALTFGQYQKELAGL 291 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + L +++L + +E L+ Sbjct: 292 TAEVSDEQLIAATELALTAKRQLASNISFQNVLEGLTLKL 331 >UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostridium acetobutylicum RepID=Q97M98_CLOAB Length = 314 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 129/346 (37%), Gaps = 42/346 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGLNCETGITAT 71 F ++ G E V + R HA + G G+GK+ +A+ + AK LN Sbjct: 1 MKFENIFGHEAVRKQFDELVKNKRFPHAIMLCGEDGIGKSIVAKEIAAKLLN-------- 52 Query: 72 PCGVCDNCREIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 + E + DLIE ++ V+ R +++ V P G K+ ++ ++ Sbjct: 53 ---------KTEIKEYADLIEWKILNDKKSISVDQVRKIIEEVNKKPYEGNNKLIVVHDM 103 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ NA LKT+EEPP V +L ++ T+ SRC + L LD ++R + Sbjct: 104 DYMTIQGQNAFLKTIEEPPLGVYIILLCQSQGRVLDTVRSRCQIYKLNRLDEHEMR---K 160 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 I ++ +E LLA ++G + ++ ++A+L Sbjct: 161 FISGTYNVTNEDEMRTLLA-FSDGIPGKVDDFLNDKSL---KEIRNMVINAIL------- 209 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + + N + ++ N+ + W + + + + + + Sbjct: 210 ------NIKKLNPKDIVDAANQLSEYKKLWREICNYFVLYIRDALVYKETGNKELLINLD 263 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD-RRMGVEMTL 353 ++++A + + + G+ L + VEM Sbjct: 264 KIEDIKKIASQFSMKQLNRMVEAVNYGQSNLETNVNMPLTYVEMLF 309 >UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit (HolB-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH60_9BACT Length = 370 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 134/383 (34%), Gaps = 71/383 (18%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + GQE+ L L + RI AYLF G+ GVGK + A +NC PCG CD Sbjct: 5 IKGQENALELLDKAIENDRIAQAYLFYGSDGVGKFTTALYFGMAVNCLATSELKPCGECD 64 Query: 78 NCREIEQGRFVDLIEI-----------------DA-----------------------AS 97 C + Q D + + DA A+ Sbjct: 65 ACHKFLQLEHPDFVYLFPTPNLNLSVEGEIKNTDAQKSYEAYLQNKINTPWKDFFFKDAT 124 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 + E L ++ + ++++ +I++ M++ + NA LKTLEEPPE +L T Sbjct: 125 EIRKESITLLNKRLELSIHEAKYRIVIIEDADMMNNATANAFLKTLEEPPERTIIILITE 184 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 + TILSR + K L I E IL E + +R G+L+ A Sbjct: 185 RLPLILPTILSRTQPVYFKPLTRGVI----EEILINE-FEINSALARSASRICAGNLKTA 239 Query: 218 LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 + + ++ + A + E N + L + Sbjct: 240 IRIASESESLSSNW-----------------AFEIFSLAAEENDLGYLELAERYKKQ-QT 281 Query: 278 WEALLVEMLGLLH----RIAMVQLSPAALGNDMAAIELRMRELAR-TIPPTD-IQLYYQT 331 + ++ ++L + + + +P + ++ +A + D + + Sbjct: 282 IDQVI-DLLKYIRIIASDLGSLSTNPDS-EITNIDKLDFLKPIAEANLGIDDRLYDFLLF 339 Query: 332 LLIGRKELPYAPDRRMGVEMTLL 354 L +++ + + + L Sbjct: 340 LEDLNRKVEGYANLNLVLTNLYL 362 >UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clostridium RepID=A5HXV3_CLOBH Length = 314 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 136/345 (39%), Gaps = 45/345 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E++ + N + G+ HA + G G+GK+ IA+ +A + Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIIL-------------- 51 Query: 78 NCREIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + +Q + DLIE ++D R+L++ + P G KV +I + +++ + Sbjct: 52 --EKSQQRSYADLIEFKPINKKSIGIDDIRNLIEEINKKPIEGNKKVIIIYKSELITEVA 109 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ---LEHILN 192 NA LKT+EEPP+ V +L + +++ TI SRC F L L I + + Sbjct: 110 QNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRLKPCDIENFIKYKYKDIK 169 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM-LGTLDDDQALS 251 +E+I +A ++G A + S + + M LG L D + Sbjct: 170 KENIN------SAIA-FSDGIPGKAERFIEDE--------SLKYIRDMSLGILKDSK--D 212 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L +N ++ N WE +L +L L + + + + Sbjct: 213 L------SNYNYLIKYENFLINYKENWEEILTCILSYLRDSLLFKETGDEELLLNVDKKE 266 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ ++ ++ + R +L + + + L++ Sbjct: 267 YIKHISEKYSYINLDKMVSIINDTRDKLSKNINSTLVFDAMLIKM 311 >UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putative n=2 Tax=Porphyromonas gingivalis RepID=Q7MVV1_PORGI Length = 416 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 142/382 (37%), Gaps = 63/382 (16%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 RP F DV G E + T L +I HA LF+G G G +A A+ LNC+ Sbjct: 34 RPMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQMPTDT 93 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRTKV------EDTRDLLD--------------- 109 CG C +C + + DL + + R + Sbjct: 94 DACGHCPSCVKYDALAHPDLFFVYPVVNASSSPAPSDDYIRQWREMLGSESYFTPADWLE 153 Query: 110 ---------------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + + ++V +I + ++ N LLK +EEPPE Sbjct: 154 YIKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPPE 213 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 H F + +++P K+ TI SR +++ L +I L N + + + +A Sbjct: 214 HTLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSR--NNQGNTAD---IIRIAH 268 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 AEG+ R A+ L A D V ++G ++ ++++ + ++ + Sbjct: 269 LAEGNYRRAMDLYRGEWADRDNFV-------LMG--------RMMGSIIKGDPSKMRPVA 313 Query: 269 NEAAARG-IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 +E AA G + L L L + + ++ A L E + L+ I +I+ Sbjct: 314 DELAALGRVSQIGFLTYCLRLFRELYISRVGVAKLNYLSPEEESFVDMLSGGITGQNIRP 373 Query: 328 YYQTLLIGRKELPYAPDRRMGV 349 + + + + + + RM Sbjct: 374 VMEEVELAIRHIRQNGNGRMIF 395 >UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC5_9CLOT Length = 327 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 44/344 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +T D G + + L L+ GR+ HAYLF G +G GK ++A A+ + C A P Sbjct: 3 KTQFDFYGNKESVQTLTCSLTGGRLSHAYLFYGPKGSGKRTLATQFAQAILCRD-PAARP 61 Query: 73 CGVCDNCREIEQGRFVDLI----EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C +C ++ + DL+ E S E R + P G +KVY++ V Sbjct: 62 CGRCADCLKVSKLIHPDLLLEGGE-GGKSSFHAEVVRKIRSEAYIRPNSGEYKVYILCGV 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV---EQIRH 185 +S + NALLK LEEPP HV FLL +P T++SRC+ L ++ + Sbjct: 121 ENMSIAAANALLKVLEEPPRHVVFLLTCESKSAIPETLVSRCVPVALYPVEPRECAEAVA 180 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L ++ I + A+SL+ I G ++ + + Sbjct: 181 RLSGETDQAQIDY------------------AVSLSGGLIGGALGLLTDKEMRQA----- 217 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + A L ++++ + + +L + G++ + + ++S Sbjct: 218 SETAQKLRDSLLSPDELDTLVASAPLDGNRALTLRVLPLLTGVIRQSILSKVS------- 270 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 R LA + +T+ + L + + + Sbjct: 271 -----ARPDPLACKYSLKALLRMVKTIDQAQSNLERNANLGLTL 309 >UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU0_9FIRM Length = 319 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 129/333 (38%), Gaps = 30/333 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 ++V + L L HAYLF G +G+GK + A+ A+ + C C Sbjct: 12 KNVSSQLDLALKNKDFSHAYLFVGPKGIGKFAQAKNFARAILCGDNKNDK-----SFCNL 66 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 + DLIE+ + K E +L++ P K+ LID ++ NALLK Sbjct: 67 LYDYFHPDLIEVSSKETIKKEQIEELIEKAGTKPFESNKKIILIDGFDNVTIEGQNALLK 126 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP +++ +L +++ + + TI SR + + VE+I L + Sbjct: 127 TLEEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYLLK------TGLSEK 180 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L + + GS+ A + D+ + +++ ++ Sbjct: 181 NARLFSNLSCGSISLAKRYKEDVELLKK----------------RDELIEILDNLIRTGS 224 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + ++ E +L +A ++++ + +L + EL + Sbjct: 225 YYIFSYLDFFKENKENIEDILNFFSLWFRDLAFIKIN--KKEKIINIDKLNILEL-EDLT 281 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 I Y +L+ ++ L + + +E L+ Sbjct: 282 LDRILFIYNKILLTKENLSKNMNYDLSIEALLM 314 >UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Corynebacterineae RepID=C3JWH0_RHOER Length = 405 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 149/406 (36%), Gaps = 61/406 (15%) Query: 15 FADVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 F +VGQ V +L + R + HA+LF+G G G++ A A L C + Sbjct: 7 FGRLVGQHDVEQSLRDAALSARGDSSGSEMTHAWLFTGPPGSGRSVAALCFAAALQCTSD 66 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 CG C C G D+ I D S V+ R++++ P GR++V ++ Sbjct: 67 GAPG-CGECHACTTTMGGTHGDVRRIIPDGLS-ISVKGMREIVNIASRRPTTGRWQVIVV 124 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++ L+ + NALLK +EEPP+ LL TTDP+ + VT+ SRC L VE I Sbjct: 125 EDADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTLRSRCRHMPLVTPSVESI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L +P ++ A + G + A L A + Q S + + +G Sbjct: 185 AQVLID-----RDGLDPERARIAASISGGHVGRARRLATDESARDERQRSLRLAADAIGA 239 Query: 244 LDDDQALSLVEAMVEANGERVMA--------------------------------LINEA 271 +A + +EA+ + A LI + Sbjct: 240 STAYKAAENLVKSIEADTKAFYAELKEQELEELKVSLGGGGTGKGTAGTLRGSAGLIKDL 299 Query: 272 AARGIE---------WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 AR + L+++ G+ L + + + ELA P Sbjct: 300 EARQKSRDTRARRDLLDRTLIDLAGMYRDALSCSL-GSTSTATHPDMARQAAELAARTSP 358 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA-LAFHPRMPLPE 367 + + +L R+ + + + ++ + AF P Sbjct: 359 EGLLKCIEAVLECREAVDFNVKLQWALDAMVASIGAAFRPPFSRSG 404 >UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Bartonella RepID=A1UT07_BARBK Length = 347 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 154/336 (45%), Gaps = 40/336 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL--NCETGITATPCGV 75 ++G E V LA R+HHA LF G RG+GK ++A A + N E G P Sbjct: 25 IIGHEEVRHFLAQLRKEKRLHHALLFEGERGIGKATLAFHFAWNILSNQENGF-LQPEYD 83 Query: 76 CDNCREIEQGRFVDLIEI----DAASR-----TKVEDTRDLLDNVQYAPARGRFKVYLID 126 R+I QG +L+ + D+ ++ ++D R+++ ++ G ++V +ID Sbjct: 84 SVIWRQIAQGSHPNLVYVARRFDSKTKKFKTGISIDDIRNMMYFLKQTSRNGEWRVVIID 143 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 ++R++ NA+LKTLEEPPE F++ T +KL TI SRC Q L++L ++++ Sbjct: 144 PADDMNRNAANAILKTLEEPPEKTLFIIITHSSRKLLSTIRSRCQQVLLRSLHDDEMKQV 203 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML--GTL 244 + HI+ ++ ++ + ++++ + +EG R A L I+ G ++ + + + T Sbjct: 204 ISHIIPKQALS-DEETVKMIIQKSEGRPRKAALL----ISYGGFEI-AKTLDNLFKQSTC 257 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + +L +A+ + + I+++ E+L + + A++ AL Sbjct: 258 NLAIVHNLAQALSSFDLD-------------IQFQQFCDEILDRIQKKAILFAEQGALAL 304 Query: 305 ------DMAAIELRMRELARTIPPTDIQLYYQTLLI 334 I + E+ + Q L Sbjct: 305 SKKYAQIWQNIHQEILEM-QLFNLDKKQFIINLLFK 339 >UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NYC4_9DELT Length = 387 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 91/405 (22%), Positives = 142/405 (35%), Gaps = 84/405 (20%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI------ 68 F+ + Q+ L+ L+ G++ HAYLF G GVGK A LA LNC+ Sbjct: 5 FSQLREQDPAKEMLSRALNSGKLAHAYLFRGPAGVGKKRAAYALAATLNCQQPPPTDSRQ 64 Query: 69 -----------------------------------------------TATPCGVCDNCRE 81 CG C CR+ Sbjct: 65 VTNQGDHEVSDHGVPHLAASETAMRTSVREPARSPQDAVPRDRLPRQGLEACGRCPACRK 124 Query: 82 IEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G DL+ + K+ R++ +++ P G ++V L+ EV + R + N+LL Sbjct: 125 FAAGSHPDLLTVSPEGAAIKIGQVREIKKALRFPPLEGSYRVVLVKEVQTMRREAANSLL 184 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEPP +L + + TILSRC AL + L E P Sbjct: 185 KILEEPPPATILILTGDEAGAILPTILSRCQVIPFYALSTATVATML----GAEGETLPP 240 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 A LA AEGSL A L + + ++ L+L+E + + Sbjct: 241 AAAATLAALAEGSLGRARLLRQKELLPLRREI----------------LLALLEQ--QPD 282 Query: 261 GERVMALINEAAARGIEWEA----LLVEMLGLLHRIAMVQLSP----AALGNDMAAIELR 312 + +I E A R + LL + G H +A++ + +E Sbjct: 283 APAAVEIILELAERCAALKDELPELLELLTGCFHDLAVLASAGRPTEQRRPLLNHDLEPE 342 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + + Q L R+EL +R + E+ L Sbjct: 343 LINAAGRWDFSQLVRRLQRLRRARRELARNCNRGLVCEVLFFDLL 387 >UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=Methylococcus capsulatus RepID=Q606M1_METCA Length = 335 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 31/336 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 L L GR+ L SG GVGK +A A+ L C + CG C CR + Sbjct: 14 ARRRLRAYLEAGRLPQGLLISGAAGVGKGVLADDFARRLLCASPPAEGACGTCHACRLVV 73 Query: 84 QGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D + I+ R VE R L+D + P G +V +I H ++ + N+LL Sbjct: 74 AGNHPDYLHIEPEEAGKRITVELVRRLIDRLSLKPQYGASRVVVIRPAHAMNMAAANSLL 133 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP H FLL + P +LP T+LSRC + ++ + E+ L Sbjct: 134 KTLEEPDPHTLFLLISERPAQLPATVLSRCQRLDVRLPEREEALRWLR------GQGVGE 187 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 A LLA A G+ A+ L + ++ A+L D+ L++ E + + Sbjct: 188 EAEALLA-MAGGAPVRAVELHGGGDLAQRRRMLFDDWVAVLR--DESDPLAVAERWAKED 244 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA--LGNDMAAIELRMRELAR 318 GE V+ + G + + + + A+ L A +E +R+ A Sbjct: 245 GETVLIWLR-----------------GWIADLIRISSTEASVPLRLANADLEPGLRKAAA 287 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + R+ L +R++ +E L+ Sbjct: 288 GLDLRALFACLDGVDAARRNLEGQANRQLVMEEILI 323 >UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Flexibacteraceae RepID=C6VRW3_DYAFD Length = 372 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 67/381 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D+ G E++ + L + + HA LF G ++A + +NCE Sbjct: 1 MLFRDIPGLENIKSTLRRSVRNSHLAHAQLFDYPAGGAGLAMALAFSTYINCENRNDDDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--------------------------------------- 93 CG C +C ++ + D I Sbjct: 61 CGTCASCVKMSKLVHPDFHFIFPIATSKKVDGKNSEAFLPLCRSFLLDNPYRVLPDWLDH 120 Query: 94 ----DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + VE+ R +L + G +K+ LI + +++ S NA+LK LEEPPE Sbjct: 121 IGADNKQGNISVEEARGILRKLSVKAYEGEYKILLIWKPDIMNAASSNAILKILEEPPEK 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + KL TI+SR + + A +I+ L+ +A Sbjct: 181 TLFLLVSDQSDKLLTTIISRTQRITIPAFSDSEIKSYLKQ------QEVSDAVANQVAFL 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 ++G++ +AL L + + + + + ++ L + Sbjct: 235 SDGNMAEALKLVQEEQDDRS-----------------AWFADWMRSSYKFDVAHLVKLAD 277 Query: 270 EAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 E + LL L L + + L ++ ++T+ ++ Sbjct: 278 SYDVMSKEKQKGLLEYALRLFRDMLVWSHGAGELLRVPQEELTFVQNFSKTVNFESLERM 337 Query: 329 YQTLLIGRKELPYAPDRRMGV 349 + + +M Sbjct: 338 IGEVNTAYYHIERNVRAKMVF 358 >UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime subunit n=8 Tax=Lactobacillus RepID=B3W9Y6_LACCB Length = 325 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 69/344 (20%), Positives = 132/344 (38%), Gaps = 37/344 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ A + ++ +YLF G +G GK ++A +A L C+ PCG C C Sbjct: 10 QPKLVAQFARIIDRKQLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQCPECE 69 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ + ++ KV+D R L + G +V+++++ ++ + N+L Sbjct: 70 RILNHNHPDVMVVKTETQSIKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSL 129 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK EEP + +L T +L TILSR ++ D + +LE E Sbjct: 130 LKFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLE----------E 179 Query: 200 PRALQLLARAAE---GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 A +AR A G++ DA +L A A+ +V+ + L+E + Sbjct: 180 GGATSQMARVAGRLTGNVADAQALL--ASATFQDRVT--------------KVFQLLERL 223 Query: 257 VEANGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + E + + + + +L + + + + Sbjct: 224 ADHDPESFVRVQTQLLPIAKDADSQRQVLALIGLAYADAL---NQHFQVTSMQQLDLPAI 280 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 LA+ + Q +L + L + E +L+ L Sbjct: 281 GVLAQR-SSEQLTTALQAILTAQVRLSQNVTFQSATEQLMLKLL 323 >UniRef50_D0LQE3 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQE3_HALO1 Length = 298 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 106/236 (44%), Gaps = 18/236 (7%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 T + GQE V+ L L R+ HAYL SG GVGK + A L + C C Sbjct: 14 TLDQIRGQERVVARLRRALEQNRVAHAYLLSGPAGVGKLTTAVALTAAIECIDAP-GQGC 72 Query: 74 GVCDNCREIEQGRFVDLIEID---AASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH 129 G C C +I G D+ ++ AA +E R ++ + P G +V+LIDE + Sbjct: 73 GTCSACSKIAAGIHPDVQLLERQGAAQIIPIETIRTQVIPRLAMPPHEGAARVFLIDEAN 132 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL-- 187 L S NALLKTLEEPP F L TT P L TI SRC + L ++R +L Sbjct: 133 ALPGPSANALLKTLEEPPPRTHFFLCTTAPDLLLPTIRSRCQRVAFAPLS-AELRAELHA 191 Query: 188 -EHILNEEHIAHEPRALQLL-ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 E + + E A +LL A A+G L A +V +AV + Sbjct: 192 GEEVAEK----LEGAAQRLLEAVEAQG----PAVLYRAAADVAGERVELRAVLELF 239 >UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus RepID=C0WUL6_LACBU Length = 336 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 30/344 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + + HAYLF+G G G+ ++A +A L C PCG C C Sbjct: 13 QPKLFEQFMRLVDRNELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKCAECT 72 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ KV+ R + + G KV++I + ++ + N+L Sbjct: 73 RIMNHDHPDVVITKPDGLSIKVDQIRHVKSEFTKSAMEGSKKVFIISDADKMTTGAANSL 132 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V L + + + TI+SR ++ + + +L Sbjct: 133 LKFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKS------GIL 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ----AVSAMLGTLDDDQALSLVEA 255 P + LL SL + S +V ++ V L + Q +L+ Sbjct: 187 PSQINLLMSMTN-SLSEIKRWQADNWFSSLQEVVSKWFGYLVKGNLMAMPYIQM-ALMPL 244 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-SPAALGNDMAAIELRMR 314 + ++V L M+G+ ++ + I + Sbjct: 245 ITNKERQQV----------------ALSMMIGVFDETLEIKYGTLKKDTTKFPDIISETK 288 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + A+ + + LL R L + + +E L+ L Sbjct: 289 QAAQEWSSDQLMTMLEELLNTRGSLMVNVNFQNVIESVTLKMLT 332 >UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJA2_9FIRM Length = 294 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 128/345 (37%), Gaps = 66/345 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +V G E + L + RI HAYLF G +A + A L CE T P Sbjct: 1 MKWDEVSGSEKITRVLQAAVQADRIAHAYLFCGADEAAIKKLAAVFAASLLCE---TKEP 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C++ DL +D ++ K+E R L P R++V+++ + L Sbjct: 58 CGICAHCKKAANRSHPDLHWVDPEGKSLKIEQVRSLKRKAYLLPHEARYQVFILTDAGQL 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP F+L +P L T++SRC F L+ Sbjct: 118 TTEGANSLLKVLEEPPPASVFILLAKNPAMLLPTVVSRCQVFSLQ--------------- 162 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 G +Q+I + ++ QAV + ++ Sbjct: 163 -------------------GGG--------EQSIPA----LNHQAVELLEVLKNNGGIND 191 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L++ + E E +L L + ++Q + E Sbjct: 192 LLDRLAENE----------------ELTDFCDTLLLTLRDLLILQTTGQQSLLTQGRDEG 235 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ P DI+ LL +K+L + R+ +E L R Sbjct: 236 LLQPFLSVWPAEDIREALAVLLKLQKDLQSPVNVRLALEGALRRL 280 >UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEP6_9DELT Length = 393 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 8/234 (3%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F VVG V L+ ++ R+HH +FSG RG+GK ++AR LA L C A C Sbjct: 10 RFPGVVGHGRVTAMLSRAIARSRLHHGLVFSGPRGIGKATLARGLACALTCAVSP-AVGC 68 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDT---RDLLDNVQYAPARGRFKVYLIDEVHM 130 G CD+CR + G D ++ +++ T R++ VQ+AP V +ID Sbjct: 69 GQCDSCRRMLCGLHTDFTVLEGQGKSRTVATGPAREVALRVQHAPFEAAAHVIVIDPADR 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ----IRHQ 186 + + ALLK++EEP V ++L T+ + TILSRC+ L+AL+ E + + Sbjct: 129 MHPAAAAALLKSIEEPRPGVHWVLLATNLHDILDTILSRCMTIPLEALNTEDTRSVVDAE 188 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE + + +PR +L A GS AL L A ++ + A+ Sbjct: 189 LERLAQARGLEVDPRRRELAISLAGGSPGVALELLSDASLEPTKELLAATLRAL 242 >UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=Granulicatella RepID=C8NGL8_9LACT Length = 319 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/341 (19%), Positives = 127/341 (37%), Gaps = 33/341 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNC 79 QE + + N + HAYLF G +G+GK +A+ +AK LNC C VC++C Sbjct: 5 QEAFIRTIDNL----QFSHAYLFEGAKGIGKAEMAKEIAKILNCTNRSVGEGACQVCEHC 60 Query: 80 REIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 IE G F D I ++ KV R L + + +I V L+ + N+ Sbjct: 61 LRIEHGNFPDYIVVEPEGTTIKVNQIRALKSQLTKTAMESSAIICVIHAVDTLTPGAANS 120 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP ++ F+L T K+ +TI SRC ++ + + L +E Sbjct: 121 LLKFLEEPTGNIHFILLTEQLSKVLITIQSRCQIIRFQSNQEDTVNGLL-----KEK-GA 174 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 QL+++ S AL L + GQ+ ++ + + Sbjct: 175 SNVTAQLVSQLTN-SADQALLLLESESF---GQIRQES-------------WNWFVRIFT 217 Query: 259 ANGERVMALINE---AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + ++ +E E L + + + + ++ Sbjct: 218 NRAMAFITIQSQVLPLLVSKVESEQFLTLLQLYIRDALLC-AQGLEGQLIQSDKIATVKT 276 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +A + ++ + ++ + +E +L+ Sbjct: 277 IAGKLSVKQWIQEHEKMTKALSKIQSNVGVQAVLEQWVLQI 317 >UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacillus cereus group RepID=C2TQM1_BACCE Length = 339 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 127/346 (36%), Gaps = 27/346 (7%) Query: 14 TFADVVGQEHVLTA-LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++ +V+ ++H++ L NGL +++HAYLF+G G K A L K L C P Sbjct: 9 SWNEVMQKQHIVGTILKNGLVNNKVNHAYLFNGEAGTLKKETALLFIKSLFCLENTERIP 68 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 C C NC I D++ I K E + L + Y K+YLID V M Sbjct: 69 CNDCRNCNRINNNIHPDVVIISPEEGGSIKKEQIQQLHKEISYTSTELSRKIYLIDRVEM 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + N+LLK LEEP + +L T + QK+ TI SRC + + + +L Sbjct: 129 LTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTIQSRCQILNFLDTPLGEYEEELSAA 188 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 ++LL R ++ A+SL + +Q M ++ + Sbjct: 189 ------NLSQDIVKLLTRMTN-NIDKAMSLARDQWFID---LHSQVACLMKNLMEPAVYI 238 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 +++ + + + L + + L+ + Sbjct: 239 EIIKLL-------------KLIDSKEKEPILFKFINIWFKDVL-YALTKKKGFISFQSQI 284 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + A + I + L G + ++ ++ Sbjct: 285 NILELHAEKLGVKGIADAIELLEKGYIRRQANVSLNLVLQEMFIKL 330 >UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0V3_SYNWW Length = 320 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 122/334 (36%), Gaps = 39/334 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ +VGQE + L L G I HAYLF G GVGK S AR A+ + A Sbjct: 4 FSSIVGQERASSLLQKSLETGTISHAYLFLGPAGVGKMSCARAFAQAIIGRDDNDAM--- 60 Query: 75 VCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDN-VQYAPARGRFKVYLIDEVHM 130 + DL+ + + S E L+ + P R +V +I + + Sbjct: 61 -----VFFREKIHPDLLILEKEEGRSVISKEQISQKLEPWLGLKPYRASQRVAIIRDSQL 115 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLK LEEPPE+ +L D Q + TI+SRC +L + I L Sbjct: 116 MSNEAANALLKNLEEPPEYAVIILIADD-QNILETIVSRCQLVRFNSLADKDIEQILR-- 172 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + EP A +GS+ A+ + + + + Sbjct: 173 ----NREVEPLKAAQAASLGQGSVATAIRFAQE--------KDYEKIWE----TSRNIIT 216 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L GE ++ + A + E ++ ++ LL I + Q + + Sbjct: 217 DLS-------GEEIVEVYKSAERMELAPELIVNLLISLLRDINIYQQTRKEELLVLPGSS 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + R + P + ++ + + Sbjct: 270 E-LANSIRQVQPQHLTAALDKIMNLKNYYRSNVN 302 >UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MGG0_BRAFD Length = 394 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 134/381 (35%), Gaps = 47/381 (12%) Query: 15 FADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 +ADVVGQE + S G + A+L +G G G+++ AR A L CE G C Sbjct: 19 WADVVGQEAAVAQFRRAASPEGSLAQAWLVTGPPGSGRSTAARAFAATLQCEQGTG---C 75 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR D+ + E+ R L+ Q APA G +V +I++ +S Sbjct: 76 GQCRACRTTLANTHPDVTVVATDKLSIAKEEVRALVMTAQRAPATGNRRVVIIEDADRMS 135 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 +FN LLK++EEPP ++L + L TI SRC L + L Sbjct: 136 AGTFNVLLKSIEEPPPATVWMLCAPSAEDLAPTIRSRCRLVTLAVPSSAVVADLLRR--- 192 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST----------QAVSAMLG 242 + + ARAA+G + AL Q A + S QAV A G Sbjct: 193 --RDGIDEQLAVRAARAAQGHIGLALRYATQEGALAAREDSARTLLSLRGTGQAVLAAQG 250 Query: 243 TLDD--------------DQALSLVEAMVEAN---GERVMALINEAAARGIEWE-ALLVE 284 +D ++ + + + + + + + + L+ + Sbjct: 251 LVDRATAEAKEHADVVAAEEKERFLRSAGIDDGKVPPSLRSQVRQLEEDAKRRQTRLVRD 310 Query: 285 MLGL--------LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 +L L + + A + + + A + + R Sbjct: 311 VLDRYLLDAHSVLRDVL-SRQLGTAAELVNLEVAGEIEDAAGHGSGKITLGLLEAVQEAR 369 Query: 337 KELPYAPDRRMGVEMTLLRAL 357 + + +E L R Sbjct: 370 DRISGNVPPLLAIEALLSRIA 390 >UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6L9_CHRVI Length = 359 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 133/339 (39%), Gaps = 32/339 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCR 80 + + + L + R+ H L SG GVGK ++AR LA+ L C+T CG C +CR Sbjct: 29 DAIWSRLQAARAADRLAHGLLISGPNGVGKRALARALAQSLLCQTPSAQGLACGQCADCR 88 Query: 81 EIEQGRFVDLIEI--DAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + G DLIE+ D S++ ++ R + P+R FKV LID L++ + Sbjct: 89 LLAAGSHPDLIEVGPDPESKSGEIPIDAVRLFAERESLTPSRALFKVVLIDPADRLNQAA 148 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKTLEEP H L +LP TI SRCL + + L + + Sbjct: 149 ANALLKTLEEPTGHTVLCLIGERIGRLPATIRSRCLLI---PVPIPDEAQALSWLASR-- 203 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 L R A G+ AL+ + L+E Sbjct: 204 --APRADWPLRLRLAHGAPLRALAEAADSARLEQRG---------------QCLDGLLE- 245 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + G+ V + G +L + G++ + + + D + + Sbjct: 246 IARGRGDPV-TIAGRWNEIG--AGRILDWLAGIMGDLLRLGVCATPPRLDHPDRQDDLAA 302 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 LA+ + P + + +L R ++++ +E L Sbjct: 303 LAQRLDPAAAHRFLKRILETRALGESNLNQQLLLESLAL 341 >UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIR6_HAHCH Length = 335 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 131/348 (37%), Gaps = 45/348 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 +T+ D VG H ++ A L +G GVGK + AK L CE Sbjct: 17 KTWRDWVGLAH----------NDKVPSAILVAGQSGVGKNRLTSEYAKFLLCEQAKRLER 66 Query: 72 PCGVCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 PCG C +C+ IE G DL + D A K++ R L D + P R ++ ++ Sbjct: 67 PCGDCRSCKLIEAGTHPDLQWVAPEDGAKAIKIDQVRGLGDFIYAKPQISRRRICVLTPA 126 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ +S NA+LKTLEEPP V LL + L TI SRC + L A D E + + L Sbjct: 127 EAMNAYSANAILKTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAPDRESVVNWLT 186 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + L +A G AL+ Q I +V ++ + G +D Sbjct: 187 Q------LDVPKERAYSLTESAGGRPLTALAWHSQDILELRAEVLADWLNYLEGRVD--- 237 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L ++ E L + L ++ G + Sbjct: 238 ---------------AFTLAETW--SKLDLERLADWLAIWLKQLLTATQIGEGEG---SE 277 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLL 354 E + + + + Y L+ ++ L + ++ +E LL Sbjct: 278 TEATLAGVGARLDTQQLVSLYAELIEIKRSLVEQRNLNPQLMLESWLL 325 >UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R923_WEIPA Length = 334 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q ++ L L+ ++ HA+LF+G G G+ +A LA L C+ P G CD C Sbjct: 14 QPQLIAQLQKALASQQLAHAFLFTGPAGRGQELVADWLAMRLMCQHVTADGQPDGTCDQC 73 Query: 80 REIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I Q D+IE+ KV+ R L + G+ K++++ ++ + N Sbjct: 74 QRIVQHEHPDVIEVHPDGKSIKVDQVRFLKEEFTKTAVEGQQKIFIVAGADTMTTSAANG 133 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP +L + ++ TI+SR A+ EQ +L + + Sbjct: 134 LLKFIEEPAPGQTAILIAENRAQILPTIISRTQVIAFAAVGNEQFEEELL------SLGY 187 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + L+ + S A Q ++ VSA+L + DQA +LV+ + Sbjct: 188 HADEVSLVQSLTD-SKVVAEEWLIDDWFRQATQATSSLVSAIL--KNSDQAFTLVQTLY- 243 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + + + LL+ + I +++ + + Sbjct: 244 --VPLALDIAHG--------KTLLMMLAQAWRDILLLKTGVQ-----NSHFANDWSREVQ 288 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + +L ++L + + +E T+L Sbjct: 289 RFDTKTLLAVINIVLSAPQQLEKNINFQTTLEATILE 325 >UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostridium perfringens RepID=Q8XHN4_CLOPE Length = 307 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 116/341 (34%), Gaps = 37/341 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G V + +S + HA+L G G+GK+ +A A + P Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKIL------GIP----- 49 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 Q VD++ + V+ R+++ P KV +I L+ + Sbjct: 50 -----SQREHVDIVHYKSEKASFGVDLVRNIIAEANKKPYECDRKVIIIHNGEKLTVAAQ 104 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLKT+EEP + ++ +++ + TI SRC L L E+I + N Sbjct: 105 NALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEEINLYISKKYN---- 160 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + L +EG + + + + +++ + Sbjct: 161 GIDDELNRTLISFSEGIPGR-------VDKFMNDDIFKDI---------RNTVIEMLKDI 204 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 E + ++ + E +L + + + L +RE+ Sbjct: 205 GHGKIEVPIKYSDKFYSMKGNEEEILETITIFARDSIIFKEIENNLSIINGDKIDDIREI 264 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + + + R L + + ++ L+ L Sbjct: 265 ASNLSYNKLNRIIKVVNEARNNLKSNTNLWLTLDSMLISIL 305 >UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1Q1_9PLAN Length = 369 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 76/355 (21%), Positives = 126/355 (35%), Gaps = 39/355 (10%) Query: 12 PQ-TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 PQ ++ VVG V++ L+ GR+ +L G G+GK + A LAK L C+ Sbjct: 5 PQGSWHGVVGHLDVVSRFEAMLAGGRMASTFLLVGPSGIGKRTFAIQLAKALLCKHSPDG 64 Query: 71 --TPCGVCDNCREIEQGRFVDLIEIDAASR---TKVE--------DTRD-LLDNVQYAPA 116 CG C +C +++ DL I + +E R L ++ P Sbjct: 65 RLKACGRCPDCLQVDSLSHTDLQVISKPADKAFIPLELLIGDKEHRMRAGLCYDLSLRPR 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G K+ +ID+ L++ NALLKTLEEPP +L T Q+ TI SRC + Sbjct: 125 DGGRKIAIIDDADYLNKEGANALLKTLEEPPPRSVLMLLGTSEQRQLPTIRSRCQIIRMS 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L I L + P +A + GS++ A+ L + + + + Sbjct: 185 RLHETSIADLLVR----HQLCDSPELAAKIAGLSAGSMQQAILLLGEGVLEFRRDLLAKL 240 Query: 237 V---SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 LG VEA + + + + +L L Sbjct: 241 STLPLETLGVA--KMVSQFVEAAGKESPAK-----------RARMKQVLEMAQQLYRGFL 287 Query: 294 MVQLSPAALGNDMAAIE--LRMRELARTIP--PTDIQLYYQTLLIGRKELPYAPD 344 + + E +++L RT+ P + + + Sbjct: 288 YAATTGTEPAIEERDHELTSAVQKLYRTLGPQPELAADLVDLAIDAETHIDGNVN 342 >UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KER2_ELUMP Length = 320 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 119/365 (32%), Gaps = 64/365 (17%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET---GITAT 71 F D++GQE + L ++ GRI A LF G +G GK A+ A LNC Sbjct: 2 FRDILGQEKTINQLKKFIASGRIPQAMLFYGPKGTGKALTAKKFAMALNCTDEAARAEFD 61 Query: 72 PCGVCDNCREIEQGRFVDLI-------------EIDAASRTKVEDTRDLLDNVQYAPARG 118 CG C NC+ I D + E++ +E RD+ Q Sbjct: 62 SCGTCLNCKNIIANTHPDFVWGDFAYQAGLTGKEVEKQQHMNIEAVRDMTTKSQQKIMTA 121 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV ++D + + NALLK +EEP + ++L + TI SRC L Sbjct: 122 RYKVLVLDHAETMLPDAANALLKFIEEPAANTVWILNCAKKDLMLSTIKSRCQAVPFAPL 181 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L + AR + GS A + V Sbjct: 182 KAKNVVDILTF------CGIDADLAARAARFSGGSAGKAREVI--------------NVL 221 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L D E L A E +L LH + + Sbjct: 222 ENLNGADAS--------AETFPYEAAATLSRTLAQARGEAYVILDMAAQGLHDM----WT 269 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 I+ +++L+ YY R + + +E L+ Sbjct: 270 KEKDVQIKEKIKQTLKQLS----------YY------RYAVSRNVSPSLALETALMETGE 313 Query: 359 FHPRM 363 F+ ++ Sbjct: 314 FNQQL 318 >UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJE4_SORC5 Length = 331 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 109/282 (38%), Gaps = 32/282 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ+ + L L GR+HHAY F G GVGK A L++ L C TG Sbjct: 1 MPFSHILGQDTAVGTLVRALEAGRVHHAYRFEGPPGVGKELAAVALSQALVC-TGGDPLG 59 Query: 73 CGVCDNCREIEQGR--------FVDLIEI--------------DAASRTKVEDTRDL-LD 109 CG CD CR D+ + D + V+ R + L Sbjct: 60 CGRCDACRRAAARSDGRPAAPLHPDVQIVAKNFYPAAVIGRSRDELTEISVDQVRAIVLA 119 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Y P GR +V+++ + LS + NA LKTLEEP F+L T+ +L TI SR Sbjct: 120 RAAYPPHEGRARVFIVRDAEDLSVGAANAFLKTLEEPRPGTHFILLTSRGDRLLNTIRSR 179 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L L IR L E L A GS AL L D+ + Sbjct: 180 TLPVRFAPLSEALIRRILRDRGVPEGRH------DLAVELAAGSASTALDLADEEQTASR 233 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 + V D A++ E++ + + + + Sbjct: 234 DA-FVKRVLEAAAARDLGPAVAFAESV-DRDKGALKDDLRAL 273 >UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XT6_CYTH3 Length = 375 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 135/383 (35%), Gaps = 68/383 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+++ G + V T L N ++ + HA LF+G G +A A +NC Sbjct: 1 MQFSEIPGLQEVKTTLVNSVTNNHVAHAQLFAGVEGSAALPLALAYATYVNCLEKADGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEI-----------DAASR----------------------- 98 CG C +C + + DL I DA+S Sbjct: 61 CGKCSSCSKYNKLIHPDLHIIFPVTTNKKITKDASSEVFFPEWRETFLANPFFTFNDWME 120 Query: 99 ----------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 VE++R ++ + +KV +I + NALLK+LEEPP Sbjct: 121 VIDGENKQLLINVEESRTVVKKISMKAFEAEYKVVIIWLPETMRAEGANALLKSLEEPPA 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL T +KL TI+SR + ++ + +IR L H + + Sbjct: 181 KTLFLLITAKQEKLLTTIISRTQRVQVRLFNDAEIRQYLIQ-----HRNISEAQAKRVTY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+G++R+A+ L + + ++ A + + ++ + Sbjct: 236 LADGNMREAIQLLSEEDQDHESKIR-----------------DWFRACFGSKLQDMIRMS 278 Query: 269 NEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTIPPTDIQ 326 +E + E + +LL LG+ M + L M ++ + I + Sbjct: 279 DEFGSLPRELQKSLLQYGLGIFRDSLMYKEVGTDLLRVDEESSDDMVQKFSNVIDFQKVV 338 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 Q L E+ + +M Sbjct: 339 SLSQVLNEAHAEIERNINSKMVF 361 >UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YGD5_EXIS2 Length = 330 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 134/350 (38%), Gaps = 30/350 (8%) Query: 13 QTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 QTF ++ Q + T L N L RI+HAY+F+G A+L AK L CE Sbjct: 2 QTFHELEQTQSVIATILRNSLQTNRINHAYIFTGDYEPLLLEAAQLFAKSLFCERRDQIE 61 Query: 72 PCGVCDNCREIEQGRFVDL--IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 PC C +CR ++ G VD IE D A+ K E ++L+ ++ G ++Y++ + H Sbjct: 62 PCQTCRSCRRMDSGNLVDYYQIEPDGAT-IKKEQIQELMHDLSLRGLEGDRQIYVVTQSH 120 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N+LLK EEP +L T PQ L TI SR + D I L Sbjct: 121 KMTPQAANSLLKFFEEPGAGKVAILITNQPQLLLPTIRSRGQLLSFRPADRLLIGQVLS- 179 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E + L LA + DA + Sbjct: 180 ----EKTGRDNE-LTQLAARVYPKIEDAEQALVEDWFVNARV----------------SV 218 Query: 250 LSLVEAMVEANGERVMALINEAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 L L+E + + + + + ++ + L + + ++L+P+ Sbjct: 219 LQLMEELANRPADLPLFVQEKWMSQFKNRQDARIGLELVTCFFEDVLHLKLNPSWETITY 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A + ++ T I + Q +L K + + ++ VE + Sbjct: 279 ANSRPLLEQMGGK-SQTTITRWLQAVLAAVKRIEANVNPQLTVERLMFDL 327 >UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacteroides RepID=D1JX33_9BACE Length = 369 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 135/389 (34%), Gaps = 59/389 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F DV+GQE L +S GRI HA LF G GVGK +A A+ L+C Sbjct: 1 MFFRDVIGQEEAKYRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTK------------------------VEDTR--- 105 CGVC +C + + D+ + + + + Sbjct: 61 CGVCPSCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAEN 120 Query: 106 -----------DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 +++ + + G FK+ L+ + + N LLK LEEPPE FLL Sbjct: 121 AQAVIYTKESDEIMKKLSLKSSEGGFKITLLWLPEKMQQACANKLLKLLEEPPEKTIFLL 180 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + P + TILSR +F+L+ ++ E + L+ + +A A G+ Sbjct: 181 VSEAPDLILQTILSRTQRFNLRKIEEECMAEALQS-----KYGVQQATSISIAHLANGNF 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AL + + + Q+ + +SL+ + + + A Sbjct: 236 IKAL---ETIHLNEENQLFFEL------------FVSLMRLSYQRKIREMKLWSEQVAGM 280 Query: 275 GIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G E + L ++ + L L + A + ++ L Sbjct: 281 GRERQKNFLEYCQRMIRENFIYNLHRKELTYMTLEEQNFATRFAPFVNERNVMGIMDELS 340 Query: 334 IGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +K + + +M L+ + + Sbjct: 341 EAQKHIEQNVNAKMVFFDFSLKMIVLLKQ 369 >UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Corynebacterium glucuronolyticum RepID=C2GG64_9CORY Length = 403 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 74/409 (18%), Positives = 132/409 (32%), Gaps = 98/409 (23%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGI------------------------------ 68 HA+L +G G G++++AR A L C + Sbjct: 3 HAWLITGPPGSGRSTMARHFAAALLCTADVVGGSGACDDAGGSGARDDAGGSGVRDDADG 62 Query: 69 -------------TATPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYA 114 TPCG C+ CR+ G +DL + VED R ++ Sbjct: 63 SGVRDDADGSGACDGTPCGQCEGCRQALNGSHLDLTVVHPTELSISVEDMRAVIRGASRT 122 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQ 172 P G F+V +I++ L+ + N+LLKT+EEPPE +L TDP+ + T++SRC Sbjct: 123 PTVGAFRVVIIEDADRLTPAAGNSLLKTVEEPPERTVIILCAPSTDPEDMLQTLVSRCRH 182 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 ++ E++ E L A A G + A L Sbjct: 183 VYIPTPSFEEVA------ATVEASGVPHDQALLAAHATAGHIGRARHLAQDPTTQRRRAR 236 Query: 233 STQAVSAMLGTLD----------------DDQALSLVEAMVE------------------ 258 + D + L++A +E Sbjct: 237 MLHLAELLFSGSDAYLEVTSLLSDVESDVKARIKELLDADLERTRLTLGAGGSGKGTGGV 296 Query: 259 -ANGERVMALINEAA------ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + + + LL++ + L A+ Q + A L Sbjct: 297 MRGTADILKKVEQKYKKQQTRELRDTIDQLLMDFIALFRD-AIAQRAGAPLL--HTDFAG 353 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL--LRALA 358 ++LA + + T+ R+ + R + + +R ++ Sbjct: 354 DSQDLAARLSDAQLIATIDTIGRARERITRNVTPRTALFAMIGEIRLIS 402 >UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=C0W271_9ACTO Length = 390 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 142/396 (35%), Gaps = 63/396 (15%) Query: 15 FADVVGQEHVLTALANGLSLGR------------IHHAYLFSGTRGVGKTSIARLLAKGL 62 + +VVGQE + AL R + HA+L +G G G+++ AR L Sbjct: 4 WDEVVGQEKAVAALQEAAVHARATLNGVETASRAMTHAWLVTGPPGSGRSTAARAFVAAL 63 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 C CG CD CR + D+ S +E+ R + N Q AP++G+++ Sbjct: 64 QCTH-PQVIGCGECDGCRHVMAKTHPDVTDFATEKSIISIEEVRAFMHNAQSAPSQGKWR 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V L+++ + + N LLK +EEPP ++L P+ L TI SRC Q +L+ V+ Sbjct: 123 VILLEDADRMQERTSNLLLKAIEEPPARTVWVLCAPSPEDLITTIRSRCRQVNLRIPPVK 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+ L +++E A A+ + A L D + ++L Sbjct: 183 QVAQLLMR---RHGVSYED--AYQAAALAQSHIGIASKLITDPEKLHDR---YTQIESIL 234 Query: 242 GTLDDDQALSLVEAMVEANGERV----------------------------------MAL 267 + A+ VE +++ N E V + Sbjct: 235 DIDNIGDAVFYVEELLKENKENVEKDLATRNAREEAELKRTLGLNDTERIPPALRSQLTQ 294 Query: 268 INEAAARG-----IEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + E R + + LLV +L + ++Q + +AR Sbjct: 295 LQEEQKRRVTRATKDPLDQLLVNLLSFFRDVMVIQTGMNHPP-INQGYVNLLENVARGST 353 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 D + RK L + E + + Sbjct: 354 LADTYRKVTAIETARKRLQTNTSINLVFEALIADLI 389 >UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YT4_LACSS Length = 330 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 136/342 (39%), Gaps = 27/342 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q ++ A ++ G++ H YL +G +GVGK +A+ LA L C+ + PC C C Sbjct: 10 QPKLVQQFAQIIARGQLAHGYLLAGAQGVGKMQLAQWLALRLFCQQVNEDSQPCYQCPEC 69 Query: 80 REIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I G D++EI K+ D R L V + ++++I+ L+ + N+ Sbjct: 70 QRILTGNHPDVVEIKPDGKSIKIADIRYLKQEVAKSGMESSQRLFIIEAAETLTASAANS 129 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP +V +L T++ + TILSR L L E +R Q E Sbjct: 130 LLKFLEEPAPNVYAILCTSNKNLMLPTILSRLQVIDLANLPKEMVRQQF------EEAQI 183 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 P QLL+ S QA Q V + S + + + Sbjct: 184 LPAQAQLLSHL--------TSDLTQAQQLLAEDWLMQVV---------AKITSWAQKVAQ 226 Query: 259 ANGERVMALINEAAARGIEWEA--LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + E + + + + + + ++GL ++ + A + ++ + Sbjct: 227 KDLESFVTIQTQLLPLLTDRSQQKIALNLIGLWYQDLLNCRCDLAGDLCFSEYRTQLNTI 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + +I + +L ++ + +E L +A Sbjct: 287 SQQMTAAEIVAQTEFVLTAQRTFEQNVSCQNVLESLTLNLIA 328 >UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQC8_9BACE Length = 331 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 115/333 (34%), Gaps = 22/333 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + + G + L + + HAY+ SG G GK +++R+LA C G P Sbjct: 1 MNLSLLAGNAALKGQLEAQTARRGLSHAYILSGPAGAGKRTLSRVLAAAFVC-RGQGDKP 59 Query: 73 CGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+ G D+ I D V R L + P KVY+++ + Sbjct: 60 CLSCPDCRKAMGGIHPDISVIGDDGKDINVAQVRALRSDAYVRPNEAGRKVYILENAQTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA+LK LEE P + FLL T + L T+ SRC L + + L Sbjct: 120 NASAQNAMLKLLEEGPPYAAFLLLTDNAAALLQTVRSRCEVVTLSPVTQAEAEAWLSRRY 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 A+ A+ EG L A++ + + A Sbjct: 180 P----DKSREAIVGAAQRCEGLLGRAVAELEGSSGGESQA--------------RAAAPE 221 Query: 252 LVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + + +M + L E + LL +++ G Sbjct: 222 LIARLSAGDELALMEFCISLEKWDRDSLSDLFSEGVLLLRHALVLRTGGDC-GEADPDRR 280 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + A+ + P + + L R + Sbjct: 281 AAAAKAAQALSPKALLVAVDVLEQLRASCAFNV 313 >UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HYF2_9SPHI Length = 379 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 138/396 (34%), Gaps = 73/396 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G L + + + HA LF G G +A L+ L C+ Sbjct: 1 MRFADIPGLPETKKNLISAVKNNHLAHALLFHGPEGSANLPMALALSTYLFCQNPGEEDA 60 Query: 73 CGVCDNCREIEQ------------------------------------------GRFVDL 90 CG C C+ +E+ G D Sbjct: 61 CGECSYCKRMEKLIVPDLNFAFPSISKEKKDSESEDEKNHELANFRNFVLENPYGNIHDF 120 Query: 91 IEIDAAS----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 I + ++ ++ G +K+ LI V L + N+LLK +EEP Sbjct: 121 IYYSGFEKKQLNISKNAAKRIIQSLSLMSFEGGYKIMLIWGVEYLHPSAANSLLKIIEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P F+L T+ P +L TILSR + ++ E+I L + E + + + + + Sbjct: 181 PAKTVFMLITSQPDQLLTTILSRTQKVLIRGFSDEEIVSHL---VGSE--SCDQKTAEQV 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 + A+G+LR+A L +V + + + L + + + Sbjct: 236 SMLADGNLREANRLI--------NKVEDEQI---------SKVRRLFLSCYTKKFKDIFN 278 Query: 267 LINEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTD 324 +E E + + ++ L +L + + L + + ++++T + Sbjct: 279 FADEFQKYDKEAQKSFMLSGLNVLREVMLKNADLNELLRTTGSDREFIDKISKTVLDENH 338 Query: 325 IQLYYQTLLIGRKELPYAPDRRMG---VEMTLLRAL 357 + Y T L + ++ + M +L+A+ Sbjct: 339 VMKLYNTFNQAHYHLERNGNAKLIFADLSMKVLKAM 374 >UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Corynebacterineae RepID=C4LLH9_CORK4 Length = 452 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 136/364 (37%), Gaps = 51/364 (14%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR 98 HA+LF+G G G++ A+ A L C+ CG C+ CR G D++ I Sbjct: 84 HAWLFTGPPGAGRSVAAKAFAASLMCKEETPG--CGQCEACRTALAGTHTDIVTIVPEGV 141 Query: 99 -TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT- 156 V+ RD+++ P +++V ++++ L+ NALLK++EEPP F+L Sbjct: 142 VIPVKQVRDMIEAASRMPTTAQWRVVIVEDADRLNDAGANALLKSIEEPPPRTVFILCAP 201 Query: 157 -TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 TDP + VTI SRC ++ +++++H L ++ + + + A + G + Sbjct: 202 STDPDDVHVTIRSRCRHVYIPTPSIDEVKHIL---ADDTALGLTDKQIDWAASVSGGHVG 258 Query: 216 DALSLT--DQAIASGDGQVS-----TQAVSAML-----------------GTLDDDQALS 251 A L DQA + Q A L D+ + Sbjct: 259 RAKRLASDDQARTQRQRALRVPEKVYQDGDAYLYTGELVASAKKEAEAATAERDEAELAK 318 Query: 252 LVEAM-----------VEANGERVMALIN-----EAAARGIEWEAL-LVEMLGLLHRIAM 294 L EA+ + M + I+ L L+++ GL M Sbjct: 319 LREALGVGAKGRGAAKAQRGSAGAMKELETKQKNRRTRMVIDLLDLSLMDIAGLYRDALM 378 Query: 295 VQ--LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 V + ELAR P + + +GR+ L + ++ Sbjct: 379 VSVNAGGGRVPAIHPDHANTAAELARRNTPEQLLQCVDAVRMGRELLASGVRQEGALDAM 438 Query: 353 LLRA 356 + R Sbjct: 439 VGRL 442 >UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostridium RepID=A6LPM5_CLOB8 Length = 310 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/343 (19%), Positives = 131/343 (38%), Gaps = 47/343 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G ++++ + N HA L G G+GK+ +A+ L+ + Sbjct: 4 IIGHKNIIDNINNRRQKDSFSHANLIIGNDGIGKSIVAKYLSNQI--------------- 48 Query: 78 NCREIEQGR---FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 I++ VD++ S V+D R+++ V P G KV ++ + L+ Sbjct: 49 ----IKERNGVESVDIVRYSPNSNSFGVDDVRNIISEVNKKPYEGDKKVLILYKCDKLTV 104 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKT+EEPP V +L + + + TI SRC + L L+ E+I LE + Sbjct: 105 QAQNALLKTIEEPPRGVHLILLSDSLEVILDTIKSRCQIYRLTPLNKEEILSYLE---EK 161 Query: 194 EHIAHEPRALQLLARAAE--GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + E LA +A G++ D ++ D + Sbjct: 162 YNNLSEDDKKAALAYSAGIPGNVDR---------FFSDDKLRNL----------RDICIE 202 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L E +V ++ + + LL +L + I +++ + Sbjct: 203 LFEDIVSRQKGIILKYEELLKSAKEDKLELLNILLSYIRDILLLKELNDSELVVNFDKIY 262 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +++ ++R I + + + R + M + + L+ Sbjct: 263 KIKNISRGISYKKLNSMLEYIKEARINFNSNTNYSMVISVLLM 305 >UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rhodopirellula baltica RepID=Q7UK75_RHOBA Length = 376 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 119/287 (41%), Gaps = 32/287 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 +++ D++G + ++T L + GR+ + LF G GVGKTS A LL + L CE Sbjct: 28 KSWNDLIGHDALITGLTAAIRQGRLGGSLLFVGPNGVGKTSAAILLTQTLLCERSTARDM 87 Query: 72 -PCGVCDNCREIEQGRFVDLIEI---DAASRTKVE------DTRDLLD----NVQYAPAR 117 PCG C +C ++ G D I++ D + +E D R L + +V P + Sbjct: 88 APCGECPSCVQVRVGTHPDFIQVRKPDDKTLIPLELLIGPVDAR-LQEGFCHDVHLRPMQ 146 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + KV ++ + L+ N LLKTLEEPP + +L + Q+ TI SRC + Sbjct: 147 AQRKVAILHDADFLNEEGANCLLKTLEEPPANALIILIGSSEQRQLPTIRSRCQVLRFQT 206 Query: 178 LDVEQIRHQLEHILNEEHIAHEPR--------ALQLLARAAEGSLRDALSLTDQAIASGD 229 E R L L+ HE AL + G + A L G Sbjct: 207 PPGEAGRALLRKQLDHYQSQHEEESLPTMSDDALDAAIELSAGDMHVAARLAR----GGG 262 Query: 230 GQVSTQAVSAMLGTLDD-DQALSLVEAMVE---ANGERVMALINEAA 272 Q+ + + + D + L+ ++ + + A + + Sbjct: 263 EQIREALWNQLAAPVPDPTAIVRLINGHLDSISKDVPKRRAALRDVF 309 >UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHI9_CELJU Length = 337 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 30/323 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA ++ ++ HA + +G RG+GK A LA+ L C+ CG C C + Sbjct: 17 QQLAQLIAARKLPHALMLAGPRGIGKRHFAEALAQLLLCQAPREGGACGQCRGCELNKAA 76 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL+ ++ KV+ R+L D + +KV +++ ++ ++ NALLK+ Sbjct: 77 THPDLLWLEPEEAGKAIKVDQVRELTDALGKTAQLSGYKVVVLEPAEAMNTNAANALLKS 136 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + +L + P + TI SRC + EQ+ L +L I + Sbjct: 137 LEEPAANTLLILVSHTPSAVLPTIRSRCQLRAMAMPRQEQVVRWLSPLLVGRDIPADE-- 194 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L AA G+ ALSL + Q Q LG L A+ L + Sbjct: 195 ---LLSAARGAPLIALSLLEGDALEQREQQLQQLTRMSLGQLS---AIELAANWHTGDAP 248 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 +M LG LH +A + +RE + + Sbjct: 249 GLMEWF-----------------LGFLHTLARWRAGVDDPQA--QRWPTELRERLQGVEL 289 Query: 323 TDIQLYYQTLLIGRKELPYAPDR 345 + + Y + +L ++ L + Sbjct: 290 SLLHRYLEKVLHAKRLLLSGANP 312 >UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_LISW6 Length = 330 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 29/341 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNC 79 Q V+ + + R+ H YL G+ G GK A LA+ L C CG C NC Sbjct: 11 QPVVMKIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLERTETELACGKCANC 70 Query: 80 REIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 I D+ E D AS K++ R L + KV +I + ++ S N Sbjct: 71 MRIASHNHPDVHLLEPDGAS-IKIDQVRALKQELSKRGMESDQKVVIIYDAEKMTVQSAN 129 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLK +EEP + L TT+P ++ TI SR K+L + + QL Sbjct: 130 SLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLLSQLTAA------G 183 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + ++ A GS+ A + + S V + L E M Sbjct: 184 ISEQKARIYASI-TGSIEQAKAFEEDDWFSEARNV----------------VIKLYEGMH 226 Query: 258 EANGERVMALINEAA--ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++ + + + AL +E+L LL+R + A + + + Sbjct: 227 HQGTSPLIIIQESWMPLFKEKDKMALGLELLLLLYRDRLHLTLDENYEPICTAQKEILGQ 286 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A ++ + +L + +L + ++ +E +L Sbjct: 287 DALRKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLVLEI 327 >UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archaea RepID=RFCS_METST Length = 321 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 136/356 (38%), Gaps = 43/356 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RPQT DVVGQE ++ L + + + +F+G GVGKT+ A LAK L E Sbjct: 8 KYRPQTLDDVVGQEQIVGRLKRYVEEKSLPN-IMFTGFAGVGKTTCALALAKSLLGEYWQ 66 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDE 127 + +E++A+ ++ R ++ + F++ +DE Sbjct: 67 Q-------------------NFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRIIFLDE 107 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 V +++ + AL + +E + F+L+ K+ I SRC F + I +L Sbjct: 108 VDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRL 167 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 ++I +EE I E AL+ + +G +R ++++ QA + + V+ +AV ++ Sbjct: 168 KYIASEEGIEAEQSALENIVYFTQGDMRKSINIL-QASTTTENTVTEEAVYDVISRAKPK 226 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 ++ + + LL I +++ Sbjct: 227 DVRKIINKALNHDFMEAR---------------------DLLRDIMIIEGVSGDDLITQF 265 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 E+ IP + + + + + R+ +E L + L Sbjct: 266 YQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNPRLQLEALLSKFLLVKQDA 321 >UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau subunits n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038309A Length = 451 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 133/327 (40%), Gaps = 21/327 (6%) Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 + ATT+ +K+PVTILSRC +F L+ ++ + + L+ I E + E AL + RAAEG Sbjct: 1 MFATTEIRKVPVTILSRCQRFDLRRVEADVLSAHLKKICAAEAVEAEDEALAAITRAAEG 60 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 S+RDALSL DQAI+ G G V+ V MLG D + + L EA++ + A + Sbjct: 61 SVRDALSLLDQAISHGAGAVTAAGVRDMLGLADRSRIVDLFEAVMRGDVPAAFAELRAQY 120 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQ 330 G + +L ++ G H + ++L A + + R+R + A +P + +Q Sbjct: 121 DAGADPAVVLSDLAGFTHLVTRLKLVQGAEADPTLSEAERVRGAQFAGRLPVRALSRAWQ 180 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 LL E+ AP EM ++R A+ +P P+ + + P P Sbjct: 181 ILLKALPEVQAAPRPLAAAEMAIVRL-AYAADLPTPDEALRQLRADIAGSEGGAPPASRP 239 Query: 391 PQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL 450 + + A P A + PV + E Sbjct: 240 SLGR------------------DGGPGAMLSHGSAALQMAPPPRPALTSVPVTASLPEAA 281 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYR 477 P E A+ EA R Sbjct: 282 PRPAPAEPDGPRLRRFEDVVAQAEAAR 308 >UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R593_9CHLA Length = 367 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 64/374 (17%), Positives = 130/374 (34%), Gaps = 48/374 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ + G + + L + I + LF+G G+GK+ A+ A+ L Sbjct: 7 FSHICGNDPIKHYLIKMIEKNAIGQSLLFAGPEGIGKSLFAKAFAEILLTNGSADQR--- 63 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 ++++ DL + ++ R L + + P + + KV++I E + Sbjct: 64 -----KQVKAETHPDLHIYRPEGKLGMHSIDAMRQLTEEIYLVPYQAKRKVFIIHEAERM 118 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +S NALLKT EEP +L T+ P+ L TI SR + + ++ + + + Sbjct: 119 LPYSANALLKTFEEPALDCVIILLTSLPENLLPTIRSRFQTIYFQEVEKKYLVKFV---- 174 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV--------------STQAV 237 +E+ + Q +A +++GS A L Q + + V Sbjct: 175 -QENFQKTEQEAQTIAASSKGSFVQAARLCSQKKTYYQDILLPLLAAGRFSSYGALLETV 233 Query: 238 SAMLGTLD----------DDQALSLVEAMVEANGERVMALINEA--AARGIEWEALLVEM 285 + L+ + S +E + E + I E LL + Sbjct: 234 RQLTDQLEQSKKQVEEEMRQELSSHLENLTAVQKESLEKEIEGFVSVQTNRETTHLLDFI 293 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMR---ELARTIPPTDIQLYYQTLLIGRKELPYA 342 L + ++++ ++ + + +Q RK L + Sbjct: 294 LSWYRDLELIRVKGDPTFLFHKDAYNQLEQSIQQGNRLSIEHVQKAI---SDARKALERS 350 Query: 343 PDRRMGVEMTLLRA 356 + +E L+ Sbjct: 351 SSIGITLENLFLKL 364 >UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Thermoprotei RepID=RFCS1_PYRIL Length = 329 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 147/348 (42%), Gaps = 26/348 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ K+RP++F +VV E V + L + G + H LF G G GKT++A +LA+ Sbjct: 1 MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPH-LLFYGPPGTGKTTMALVLAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPA-RG 118 L E T +E++A+ + R+ + + + AP + Sbjct: 60 ELYGEYWRENT-------------------LELNASDERGINVIRERVKEFARTAPVGKA 100 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE ++ + AL + +E ++ +F+L ++ I+SRC F + Sbjct: 101 PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM 160 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + +L++I E + + A+ L+ +EG +R A+++ Q A+ + V V+ Sbjct: 161 PRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINIL-QVAAATNKIVDRNVVA 219 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQL 297 A + + L + + + + E +G+ + L R+++ Sbjct: 220 AAAAAIRPTDIVELFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDE 279 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + A + +A ++ R+ + A + + L K++ A Sbjct: 280 TKAEVAELLADVDYRLTQGADE--EIQLSYFLAKLGSIGKKIRAASLP 325 >UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermanella marisrubri RepID=Q1N4U3_9GAMM Length = 328 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 34/334 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L+ LS R+ HA L +G +GVGK + A+ + C G TPCG C +CR G Sbjct: 15 QTLSQQLSSQRLGHAVLLTGQQGVGKRVFLKEFAQLVLCHQGEQQTPCGECASCRLFTAG 74 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D I ++ K++ R + D V ++G+ KV L+ +++ ++ NALLK+ Sbjct: 75 NHPDFITVEPEETGKAIKIDQIRRVTDFVNTTASQGQRKVVLLGPAEVMNINASNALLKS 134 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP V LL + P +L TI SRC Q+ + L+ E Sbjct: 135 LEEPSSQVTMLLYSHQPSRLLATIKSRCQQYSAPTPKFQDGLMWLQQNSQESG------- 187 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L L R A+G+ + + +Q + Q M + Sbjct: 188 LDSLLRLAQGAPLKVIEMIEQDVHVQY----MQFCQDMQDLANHSVVWQ----------- 232 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 ++++ +E+ LL GLL + + + + ++ +++ + Sbjct: 233 ---GVVSKWKNWSVEY--LLDWFYGLLLDVQRCKSGVQDRL--IPELNMQTELVSKRMSV 285 Query: 323 TDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLL 354 + + +K + P+ + +E L+ Sbjct: 286 AEADGILSAIYESKKAVVSGSNPNPTLLIERLLV 319 >UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=Entamoeba RepID=B0EMU2_ENTDI Length = 539 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 137/337 (40%), Gaps = 44/337 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP T + G E++L +L ++ +I H LF G G GKT+ A + K Sbjct: 1 MS-LPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPH-MLFYGPPGTGKTTTALAIVK 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CG + ++E++A+ ++ RD + +A R + Sbjct: 59 QL----------CGT-----KFSAL----VLELNASDERGIDVVRDQIK--SFASTRTLY 97 Query: 121 ----KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K ++DE L++ + NAL +TLE+ + +F+ + + I SRC + Sbjct: 98 TNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFG 157 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD--QAIASGDGQVST 234 L + +E+I +E + + A + + ++G DA S+ + QA++ Q++ Sbjct: 158 PLSPNALTKIVENITTKEGMEIDDDAKKSIIEISKG---DARSIINTLQALSMTCKQITN 214 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + M+G Q ++ ++ + +++ G+ + + Sbjct: 215 STLYTMVGLPTPAQIDDIISELLSSPYFESFTVVDNLIKAGLSLNDI------------I 262 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 +++ P + + ++ + + + I+ Sbjct: 263 IRVVPKLIEGKLVSVLDKTARIQCLYQLSLIEQALSI 299 >UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-terminal region n=2 Tax=Bacteria RepID=Q4V1E4_BACCZ Length = 130 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ K Sbjct: 3 NYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGLRGTGKTTVAKIIGKD 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T PC C NC +I +F D++E DAAS VE+ R + D V AP G++ Sbjct: 63 VNCLTPLNNGEPCQKCANCSDINNNKFADILEFDAASNNVVEEIRQIRDQVHLAPVTGKY 122 Query: 121 KVY 123 KV Sbjct: 123 KVC 125 >UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subunit n=13 Tax=Lactobacillus RepID=B2GAE3_LACF3 Length = 346 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 66/343 (19%), Positives = 116/343 (33%), Gaps = 29/343 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNC 79 Q + A+ + G + HAYL G +G ++A +A L C P C C Sbjct: 11 QPEITARFASLIERGTLAHAYLLVGNVNMGTVALATEVALRLFCPHQDDQGHPDRTCPEC 70 Query: 80 REIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + G D++ R KV+ R L G KV++I+ L+ + N+ Sbjct: 71 QRVLSGNHPDVVVARPEGRQIKVDQVRYLKAEFSKTGVEGEKKVFIIEGAETLTGSAANS 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP V L T + + T+ SRC L+ L E ++ QL+ E++ Sbjct: 131 LLKFIEEPGPGVYIFLLTPNKNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGVPEYLGP 190 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 L L A+ SL + + + Sbjct: 191 LAAGLGLSAKQG-------ASLMEDDWL----------------PTSVKLVFDWFKEVAS 227 Query: 259 ANGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMR 314 + + + +G + LL + + +++ + + Sbjct: 228 GDPLSFVDVQTGFLKQGSDRAKQLVLLDLVTMVWRDALLLKNRVTEPERLHFRQWQAEVA 287 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +L + + + L GR L + VE LR L Sbjct: 288 QLIMPSSAQQVLVASELTLEGRHLLDQNISFQNVVEQLTLRLL 330 >UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RA91_9FIRM Length = 325 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 128/342 (37%), Gaps = 37/342 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L N L R+ HAY+F+G G GK A LLA+ + C+ C C C+ Sbjct: 10 QPIAYQTLENALCQDRLAHAYMFNGPSGTGKKEAAYLLAQSILCDA--EGFACESCAICQ 67 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGR-FKVYLIDEVHMLSRHSFNA 138 + + D+I +D +++ K ED L G+ K+Y++D + + N+ Sbjct: 68 RVLHNEYSDMIYLDGSTKAIKKEDIMKLQSAFSKTGLEGKGKKIYILDHAENATVDALNS 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE-HIA 197 LLK LEEP + +L ++ TI+SRC AL + + E Sbjct: 128 LLKFLEEPNSDMIAILLVEALDRVLPTIVSRCQIIPFIALGSD--------VCYNEAKAE 179 Query: 198 HEPRALQLLARAAEGSLR--DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + LL+R +R DA+ + + Q V + L L Sbjct: 180 IDDLDAYLLSRW----IRQKDAIVAASETEDYQHARFVFQGVVERYLVSPHEALLFL--- 232 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++ ++ G + +V+ML I M + + + ++ Sbjct: 233 -------QLEGFPSKQKKYGKQAFGYVVDML----NILMKDAFKGSAITQDSWYQKQLTS 281 Query: 316 LA-RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +A + + Q + + +L + + ++ + L + Sbjct: 282 IADKNYDYRKLA---QIFMDTKDKLLRSVNIQLLADQMLYKM 320 >UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFU2_KYTSD Length = 394 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 147/389 (37%), Gaps = 50/389 (12%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ +VGQE + LA ++ R+ HAYLF+G G G+++ AR A L C G C Sbjct: 6 WSALVGQEELAEGLAQAVADPRRLTHAYLFTGPPGSGRSTAARAFAAALLCPDGG----C 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR G D+ ++ V + RDL + P+ G +++ +I++ L+ Sbjct: 62 GSCRECRSALDGTHADVEVVNTEGLSISVRNARDLAMAAAHHPSVGAWRIIVIEDADRLT 121 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE---- 188 + +ALLK LEEP ++L PQ + VTI SR L+ V+ + LE Sbjct: 122 EQAADALLKALEEPSPRTIWMLCAPSPQDVIVTIRSRSRHLSLRTPPVQAVAELLESQGV 181 Query: 189 --------HILNEEHIAHEP-------------RALQLLARAAE-GS-LRDALSLTDQAI 225 + HI R ++ A GS LR A +L + A Sbjct: 182 DAAMAAYAARAAQSHIGVAKWLARDEAARARRHRVTRIPAELTGLGSALRQAATLHEVAT 241 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSL--VEAMVEANGERVMALINEAAARGIE------ 277 + + + V+ ++ L L + + + +N+ A Sbjct: 242 SEAKAEAEQKDVAE------REELLRLNGADPAARTQPPAIRSQLNQLAKEQKARATRRV 295 Query: 278 ---WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 + LV++ + ++ + + + +LART ++ + + Sbjct: 296 RDVIDRTLVDLASVYRDALLLAVGAGQIELVNPQNVAELEQLARTTSADNLLCCLEEIDR 355 Query: 335 GRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R + + +E L+ Sbjct: 356 ARTRIAENVMPLLALEAMLVSLGGLQSDA 384 >UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=Staphylococcus RepID=Q49UZ3_STAS1 Length = 309 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 123/332 (37%), Gaps = 37/332 (11%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L ++ HAYLF G G +A K + C C ++E Sbjct: 8 LTKAYQSNKLSHAYLFEGDDGQTMQQVAIDFTKLILCNGD------YQCQ--LKVETFNH 59 Query: 88 VDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 D + I + + K + L+ ++ P G +KVY+I+ L+ N++LK LE+P Sbjct: 60 PDFMYISSEETTIKKDQVEQLVHHMNQLPIEGDYKVYIIESFEKLTVQGENSILKFLEDP 119 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PE+ +L TT P+++ TI SRC + K +D + ++L E + + Sbjct: 120 PENTIAILLTTKPEQILDTIHSRCQHVYFKPIDKTKFINRL----------VEREITKPV 169 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 A L + V+ + ++ + + ++ ++A Sbjct: 170 A-----------ELLSTYTTQIEVAVTLNEETDLMAL--RKSVVKWCQLLLTNRSMALIA 216 Query: 267 LINEAAARGIEWEALLVEMLG---LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 +++ + + LV + + ++ ++ ++ ++ + Sbjct: 217 IVD-LLKQAKNRKLQLVTLAAVNGFFEDVMHAKVGMDQDM-IYHDLKEDIKAFSKKLTYN 274 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I L Y + K+L + + E +++ Sbjct: 275 QIILMYDQITEAHKKLNQNVNPMLVFEQIVIK 306 >UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporoblastina RepID=RFC4_ENCCU Length = 309 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 135/338 (39%), Gaps = 36/338 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K++P D+VG E + ++ + + H LF+G G GKT+ A++LA+ L Sbjct: 4 LVNKYQPSEIQDIVGNEATMELVSLMIESRDMPH-LLFTGPPGTGKTTCAKILARRLL-- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFKVYL 124 G L+E++A+ ++ R + + Q FK+ + Sbjct: 61 -------------------GNKEGLLELNASDERGIDTVRTTIKSFAQRRVKDCEFKIII 101 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + A+ + +E +F+L K+ I SRC ++ I Sbjct: 102 LDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVIL 161 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L+ I E I AL L+ ++G +R +L++ QA + G V + ++G Sbjct: 162 KRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNIL-QACINSPGTVDQDYIIKIIGLP 220 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI---AMVQLSPAA 301 + +++ +++ E + + +E + L+ + ++++ A Sbjct: 221 SPKRIEKVLQRLLKREVEEALEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKVIGLA 280 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 + R++ +++ L +G K L Sbjct: 281 NLRISEGVNSRLQ---------FYGMFWDILDMGSKRL 309 >UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67486_AQUAE Length = 305 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 105/294 (35%), Gaps = 60/294 (20%) Query: 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ----------- 84 I LF G G GKT A AKG+ C+ + CG C +C+ + + Sbjct: 14 HIPGGLLFYGKEGSGKTKTAFEFAKGILCKENV-PWGCGSCPSCKHVNELEEAFFKGEIE 72 Query: 85 ------------------GRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLI 125 G D + I + K+E R++ + PA R KV +I Sbjct: 73 DFKVYKDKDGKKHFVYLMGEHPDFVVIIPSGHYIKIEQIREVKNFAYVKPALSRRKVIII 132 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D+ H ++ + NALLK LEEPP F+L T + TILSR Q K V+++ Sbjct: 133 DDAHAMTSQAANALLKVLEEPPADTTFILTTNRRSAILPTILSRTFQVEFKGFSVKEVM- 191 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 E + +A+ + GSL+ A+ L + V L Sbjct: 192 --------EIAKVDEE----IAKLSGGSLKRAILLKENKDILNK-------VKEFLENEP 232 Query: 246 DDQALSLVEAMVEANGE------RVMALI--NEAAARGIEWEALLVEMLGLLHR 291 + L + E +M + + + L++ + L Sbjct: 233 L-KVYKLASEFEKWEPEKQKLFLEIMEELVSQKLTEEKKDNYTYLLDTIRLFKD 285 >UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosococcus oceani RepID=Q3JAL5_NITOC Length = 337 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 123/342 (35%), Gaps = 35/342 (10%) Query: 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQG 85 +L R+ HA L G G+GK S A L + L+CE CG C CR G Sbjct: 14 SLMASQIAKRMPHAILLMGPEGMGKRSFASNLIQALSCEYPQKGGHGCGSCAGCRLQLAG 73 Query: 86 RFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D + + + V R L ++ + FK +I ++ + N+LLK Sbjct: 74 SHPDNLTLFPREGKQTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSAANSLLKI 133 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPP LL T+ +LP+TI SRC Q ++++ L+ L + A Sbjct: 134 LEEPPGRTVLLLITSASLRLPITIRSRCQQLFFTISKSQEVKMWLQQRLPP---SMNLDA 190 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL-DDDQALSLVEAMVEANG 261 + LL R + G AL +Q + ++ + +V + ++ N Sbjct: 191 VTLL-RLSGGGPLRALEYVEQNFLFYRK----EFINNLFSLTQGKLDLFEMVRSCLKDNL 245 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + I+ ++ + + ++ LAR Sbjct: 246 GEPLYWISTLVE-----------------DTIRLRSGVSKRFLVNHDVANSLQLLARRAS 288 Query: 322 PTDIQLYYQTLLIGRKEL---PYAPDRRMGVEMTLLR-ALAF 359 + + +E+ + ++ +E L++ + F Sbjct: 289 FEMLFALLKKAS-CNREIWKGQININPQLLLEEILIQWLICF 329 >UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas vaginalis RepID=A2E057_TRIVA Length = 325 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 126/288 (43%), Gaps = 28/288 (9%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ D+V QE + AL L G + H +F G G GKTS+A L Sbjct: 13 KYRPKNLDDIVQQEEAVKALKTTLETGDLPH-LIFHGPPGTGKTSLALAL---------- 61 Query: 69 TATPCGVCDNCREIEQGRFV-DLIEIDAASRTKVEDTRD-LLDNVQYAPARGR--FKVYL 124 CR + F + E++A+ ++ R + + A G+ FK+ + Sbjct: 62 ----------CRSLFGEDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGKIPFKIVI 111 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + NAL + +E +F++ K+ ILSRC +F K LD I Sbjct: 112 LDEADSMTSAAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAII 171 Query: 185 HQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAML 241 +L I ++++++ + + L + G LR A++ A ++ +++++ ++++ Sbjct: 172 QRLHKIFDDQNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSIS 231 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 G + + + A+ + + + G + + ++ L+ Sbjct: 232 GAANPSDVENYFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLI 279 >UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BV86_9GAMM Length = 334 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 119/337 (35%), Gaps = 34/337 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 + + + + + R+ HA L SG +G+GK A+ LA+ L CE CG C C Sbjct: 8 HDALWQQIQSRVMQNRLPHALLLSGPQGMGKALFAQRLAENLLCEQPQADGQTCGHCKPC 67 Query: 80 REIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + DL +++ + V R+L+ + R ++ +++ ++R++ Sbjct: 68 HLLLANTHPDLFKVEPVEAGKQISVNQIRELIQFSTLTASYNRHQIIIVNPAEAMNRNAA 127 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL-EHILNEEH 195 N+LLK LEEP +L + Q L TI SRC + + + L + + + Sbjct: 128 NSLLKLLEEPSSDTVIMLVSHQYQALLATIRSRCQRIDFSHPEPTVTQTWLHNQLSTKIN 187 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 I L+L++QA + T G + Sbjct: 188 IQL------------------LLNLSNQAPLAALALAQTD------GMAKRQILFESLTQ 223 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + + +E +L ML I ++ + ++ Sbjct: 224 LPTG-KDDPIRIAESWNQ--LEVVQVLEWMLLWTMDIIRYGITEQRHSIINQDHQQTLQR 280 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPD--RRMGVE 350 LA+ P + + + + + + +E Sbjct: 281 LAKQFNPLKLFELLDLQTEAYRLIMGSTNVKPQGLLE 317 >UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMF7_MOOTA Length = 284 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 113/332 (34%), Gaps = 70/332 (21%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L G++ HAYL G G+ + A LA LNC PCG C +CR++ G Sbjct: 5 QQLKQALLAGKLAHAYLLVGGSEEGRRAEAIYLATALNCRYLQGGEPCGSCHSCRQMAGG 64 Query: 86 RFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D ++ + K+ R+L + +G KV ++ ++ + N LLKTLE Sbjct: 65 NHPDFYLLEPRGTNLKIAQIRELEARLALQAFQGGVKVAVLAGADTMTEAAANCLLKTLE 124 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPPE +L P L TI SRC + HL Sbjct: 125 EPPEGTYLILLAAQPDPLLPTIRSRCQEIHL-------------------------EGAM 159 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 +++A G V+A L + ++ L Sbjct: 160 AISQAGTGYWAR-------------------LVAADLPVIMEEILPEL------------ 188 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + + A+L M + QL+ +A + P+ Sbjct: 189 --------EKEADLPAVLTGMALACRDQLVWQLTGSATLLLKPGEPPT-----PFLAPSR 235 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + T+ L + + R+ +E+ + + Sbjct: 236 LWACFWTIQDTLAALEHNANHRLALEVMMFKL 267 >UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MP27_BDEBA Length = 314 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 125/342 (36%), Gaps = 40/342 (11%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 R F V+G + + + G+ +LF G G+GK A LA+ L C + Sbjct: 3 RMLDF--VLGHQETIKKMVESFENGKPGQTFLFVGPGGIGKKLTAMGLAQALLCPSSPRG 60 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C I QG L I + K+E +++L+ + G +V +ID+ Sbjct: 61 --CGKCPSCFRISQGSHEGLKLIAPNGANIKMEQAKEVLEFLSLKSLTGN-RVIVIDQAQ 117 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 L+ + N+LLKTLEEPPE F L + TI SR + L E + +++ Sbjct: 118 TLNPQAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFRPLTQEDLGKRVK- 176 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 A +AA GS Q + +V +AV + Sbjct: 177 ------------APAWALKAAGGSFEK----LAQLQDGPEQEVREKAVELLT-------- 212 Query: 250 LSLVEAMVEANGERVMALI-NEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + + + ++ + + + ++ +G L +Q A Sbjct: 213 ------LFIQDADFLLNELWRNEFKDRAQGQRMISYWIGFLKDAICLQE-GAKTQIVNLD 265 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ LA + I Q L + D ++ +E Sbjct: 266 QAPLIKVLAE-LERPRILNLIQKALQVEQAFAANRDPQLIIE 306 >UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=Actinomycetales RepID=A1SDP5_NOCSJ Length = 385 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 135/383 (35%), Gaps = 46/383 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + +VGQ AL + HA+LF+G G G+++ A A L CE CG Sbjct: 4 WDGLVGQHRPSEALRAAAHGQGMSHAFLFTGPPGSGRSNAAVAFAAALQCERPED-RGCG 62 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C + G D+ I V++ RDL+ AP R+++ ++++ L+ Sbjct: 63 ECHECHTVLTGSHADVAVIRTEKLSIGVDEMRDLVRRSALAPVGRRWQIMIVEDADRLTE 122 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 ++NALLK +EEP + ++L + + T+ SRC L + + L Sbjct: 123 RAWNALLKAIEEPADRTVWMLCAPTVEDVLPTVRSRCRLVTLTTPTTDDVASFLVRA--- 179 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + ARA++G + A +L + + ++ +A + + Sbjct: 180 --DGVDAAVASYAARASQGHIGRARALARDEATRNRRREVVALPARLVSLRACMEAATSL 237 Query: 254 EAMVEANGERV-----------MALINEAAARGIEWEAL--------------------- 281 + + E V + RG Sbjct: 238 AEVAKQEAELVTGELDAREKADLDAAYGVVERGRRPREYAPALRDLEKDQKTRAKRRYLD 297 Query: 282 -----LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT-DIQLYYQTLLIG 335 L++++ + A+ + AA I + LAR P +++ Sbjct: 298 VVDRGLMDLVSVYRD-AIAVATGAAGLLVNEEIRGDVELLARVSTPEVNLRRIAAIFEAR 356 Query: 336 RKELPYAPDRRMGVEMTLLRALA 358 + L + + +E ++ +A Sbjct: 357 EQMLEFNVQPMLALESMMVALVA 379 >UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=Alcanivorax RepID=Q0VQM5_ALCBS Length = 335 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 35/327 (10%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 + GR+ HA L SG +G+GK +A LA+ L CE PCG C C+ G DL Sbjct: 27 ARGRLPHALLLSGPKGIGKLRLAESLAQTLLCEKPSAGLPCGHCQGCQLSTAGTHPDLYR 86 Query: 93 IDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + + K++ R L+ ++V +I L+R++ NALLKTLEEP Sbjct: 87 LSPEEKSKTIKIDQVRKLVAFATRTAQYSGYRVAIISPAEALNRNAQNALLKTLEEPGTQ 146 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 LL + P L TI SRC Q + L V++ H L+ + ++ A LL A Sbjct: 147 TLLLLVSDQPTLLLPTIRSRCQQ-RILPLPVKE--HALQWLQSQ----VGESAASLL-DA 198 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A+G+ AL+L + ++ V G + + + + ++I Sbjct: 199 AQGAPLRALALEQAEWFADRTRLLDTLVRVAEG---RQSVAQASPVLAKHDPTEMASVIY 255 Query: 270 EAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 +R + Q S AL + + L + +PP + Sbjct: 256 GWLSRSLNQR-------------FSGQQSSDALLAPL------LERLNKAVPPARLLRAA 296 Query: 330 QTLLIGRKEL--PYAPDRRMGVEMTLL 354 Q +L GR+ L P++ + E LL Sbjct: 297 QRVLEGRRALLSGANPNKELLYEQWLL 323 >UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacteroidetes RepID=A0M6J3_GRAFK Length = 385 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 135/397 (34%), Gaps = 68/397 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++G H+ L RI HA LF+G G G +A A+ + C+ Sbjct: 1 MLFNDIIGLPHIKNHLTTTADRNRIPHAQLFTGKSGSGALPMAIAYAQYILCKNTGGEND 60 Query: 73 CGVCDNC-REIEQGRFVDLIE-------------------ID------------------ 94 C + DL +D Sbjct: 61 SNTAAGCNLKFNNHSHPDLHFAFPVATNDKIKSQPISSHFLDEWRNFLKTNPYGSLYDWY 120 Query: 95 -------AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + V + ++++ ++ G FKV +I ++ + N LLK +EEPP Sbjct: 121 QSLGIEKKQGKIGVHEAQNIVKSLSLKAYEGGFKVMIIWMAEKMNMEAANKLLKLIEEPP 180 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 FLL + D +++ TI SRC + L I + L +E+ + P + +A Sbjct: 181 NKTVFLLISEDEEQIIQTIRSRCQSLYFPPLSEADIANTL---AEKENCS--PAIAKKIA 235 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 A G A+ + + + S +A + N V+ L Sbjct: 236 HQANGDYTKAIHILRKNSGDEQFEAWF-----------ISWVRSAFKA--KGNKSTVLEL 282 Query: 268 I---NEAAARGIEWE-ALLVEMLGLLHRIAMVQL-SPAALGNDMAAIELRMRELARTIPP 322 + E AA G E + + L+ + + ++ + + + + +A + ++ A + Sbjct: 283 VSWSEEIAALGRETQKSFLLYCIDFFRQSLLLNYKAKSLVYLEPSAEKFKLENFAPYVHG 342 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +I L + + ++ + ++ F Sbjct: 343 NNITEITSALETAIYHIERNGNAKIILTDLSIKLTRF 379 >UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Tax=Plasmodium RepID=B3L0H3_PLAKH Length = 330 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 116/301 (38%), Gaps = 32/301 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M K+RP+ D+V Q + ++ L + + H +F G G GKTS LA Sbjct: 1 MDNLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPH-LIFHGPPGTGKTSAINALAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 L I+ ++E++A+ + R+ + Sbjct: 60 ELFGRDNISER------------------VLELNASDDRGINVVREKIKAYTRISISKNK 101 Query: 119 ----------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E +F+L K+ I S Sbjct: 102 INSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYS 161 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC + + + ++ + +L +I E I AL + +G LR A+S+ Q + Sbjct: 162 RCSCYRFQGIPIDVKKEKLLYICKSEGINILDDALDKIIETTQGDLRRAVSIL-QLCSCI 220 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 D ++ ++V + G DD +++A + + V + + G + + + Sbjct: 221 DPMITLESVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNY 280 Query: 289 L 289 Sbjct: 281 F 281 >UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAF1_9FIRM Length = 331 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 127/342 (37%), Gaps = 34/342 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V L + L ++ HA+LF G +G + A LLA+ L C+ C C +C+ Sbjct: 11 QPVVYQTLKHALVQKKLAHAFLFVGQKGTPRLETALLLAQSLICQHVHDGFACEECSDCQ 70 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPAR-GRFKVYLIDEVHMLSRHSFNA 138 I + + DLI +D AS+ K ++ L + KVY+++ + + N+ Sbjct: 71 RIAEANYADLILLDGASKSIKKDEILSLQERFNKTGLERSGQKVYILNNAENTTPEALNS 130 Query: 139 LLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK LEEP +L + ++ TI+SRC + L QI I EE + Sbjct: 131 LLKFLEEPQGSDTLAILIVENQDRILPTIVSRCQTLTFRPLTQRQI----HQIALEEQLD 186 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQAVSAMLGTLDDDQALSL-VE 254 LL+ +RD + A A +G + + +++ + + E Sbjct: 187 ETDG--YLLSHL----IRDVDQIKQTAEDEAYQNGMLMMRRFIREFPLREEEVLVWMQTE 240 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + + E+ + + +L L A+ A + + Sbjct: 241 YLGSKDKEK----------DKRTFGYFIDCLLQFLRDAAVGHTEGPAWMAEEIVKWNQR- 289 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + LL R +L + + + + + + Sbjct: 290 -------PLRLDQLIIVLLECRDKLSRSYNLPLLADQLIYQM 324 >UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNC9_9SPHI Length = 376 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 130/382 (34%), Gaps = 67/382 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQ + L + + + HA +F G G +A A+ ++CE Sbjct: 1 MLFKDIIGQTEIKQQLIHAIQSNHVAHAQMFWGAEGGAALPLALAYAQYIHCENKQATDA 60 Query: 73 CGVCDNCREIEQGRFVDLIE---------------------------------------- 92 CG C C + ++ DL Sbjct: 61 CGTCAACIKSQKLIHPDLSFVFPVATTKKISSKPVSKDFMEEWRQFLTKHPYVSLSDWLS 120 Query: 93 -IDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 IDA S V+++R ++ + P +K+ L+ ++ + NA+LK LEEP Sbjct: 121 FIDAESKQANISVDESRHIIQQLSLKPFESEYKILLLWLPEFMNISAANAILKILEEPSP 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL + +P +L TI+SR + E++ + L H P Q +A Sbjct: 181 KTLFLLVSQNPNQLLATIISRVQAVQTAPITDEEVANYLVA-----HQQLPPEKAQQVAY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+GS+ A+ L D + + + + + + E +++L Sbjct: 236 MADGSINAAIHLLDNTHHTQ-----------------HELFVEWMRTCFKKDMEALVSLT 278 Query: 269 NEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + A + + L L + + + L ++ +R + + L Sbjct: 279 DTFAKLSKDQQKNLFQYGLHICREALVWKQGDEQLVRLAGKEYQFVQNFSRVLQIHNSSL 338 Query: 328 YYQTLLIGRKELPYAPDRRMGV 349 Y+ L ++ Sbjct: 339 LYEQFNDAIFHLERNASPKIVF 360 >UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=Actinomycetales RepID=D0LEI8_GORB4 Length = 431 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 125/368 (33%), Gaps = 50/368 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITATPCGVCDNCREIEQGRFVD 89 S + H++LF+G G G++ A A L C+ CG C C + G D Sbjct: 56 AASRASMTHSWLFTGPPGSGRSVAATCFAAALQCQADDPADIGCGQCRACVTVMAGTHAD 115 Query: 90 LIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + I T V+ R+++ P GR+++ ++++ L+ + NALLK +EEPP Sbjct: 116 VRSIAPDGLTLSVKSMREIVQTASRRPGTGRWQIVIVEDADRLTEQAANALLKVVEEPPS 175 Query: 149 HVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 FLL DP + VT+ SRC L + V I L +P Sbjct: 176 RTVFLLCAPSVDPDDISVTLRSRCRHVALTSPSVADIERVLVD-----RDGIDPAQAAWA 230 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML------------------------G 242 A G + A L A A +++ + A Sbjct: 231 ASVCGGHIGRARRLATDADAREQREMALRLARAATVDSTAYKAAEELVRTAEAASKAIAA 290 Query: 243 TLDDDQALSLVEAM-----------VEANGERVMALINEAAAR-----GIE-WEALLVEM 285 L++ + + A+ + + + G + + LV++ Sbjct: 291 ELNEPELEEMKTALGAGGTGKGTARAPRGSAGAIKELEKRQKSRETRVGRDVLDRALVDL 350 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L +V + + + +A P + + +L R+ L Sbjct: 351 AALFRDALVVGVGAQVTPMHPDKADDVVIPMAGFARPEQLLQCVEAVLACREALDVNVKP 410 Query: 346 RMGVEMTL 353 + V+ + Sbjct: 411 KFAVDAMV 418 >UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisseriaceae RepID=B4RK44_NEIG2 Length = 325 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 124/338 (36%), Gaps = 48/338 (14%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAA 96 +A+LF G +G GKT+ AR AK L CET PCG C +C +G D EI Sbjct: 21 PNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGRGSHPDFYEITPL 80 Query: 97 S----------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 + R K++ R+++DNV RG +V LI ++ + N+LLK LEEP Sbjct: 81 ADEPENGRKLLRIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEP 140 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH--ILNEEHIAHEPRALQ 204 P V FLL + K+ TI SRC + L A + L + E + Sbjct: 141 PPQVVFLLVSHAADKVLPTIKSRCRKKVLPAPSHGEALAYLRDRGVAEPE---------E 191 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 LA + + +G++ + L+E + E ++ Sbjct: 192 RLAFHSG-----------APLFQEEGEL-------------RELRAKLLEILAEPRLLKI 227 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + + + M L + + A E R+ + A P + Sbjct: 228 LDYAALFDKEKLPLAVFVGWMQKWLVDLGLC--LQHMKPVYYPAYEDRLLQTASGFRPRN 285 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + L + + +M +E L+ L Sbjct: 286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKE 323 >UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micrococcaceae RepID=C5C8W4_MICLC Length = 396 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 129/373 (34%), Gaps = 47/373 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA 70 P FAD+ GQE + L + R HA++F+G G G+++ AR A L CE A Sbjct: 6 PAVFADLAGQEAAVAQLRRAAAADRPTHAWMFTGPPGSGRSTAARAFAAALQCEVADPAA 65 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C CR + G D+ + A ++ED R L++ Q PA GR++++L+++ Sbjct: 66 RGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRIFLMEDAD 125 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLK +EEPP ++L T P + T+ SRC L VEQ+ L Sbjct: 126 RMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVEQVAELLHR 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + AR ++ + A L A + D Sbjct: 186 -----RDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAMAL 240 Query: 250 LSLVEAMVEAN----------------------------GERVMALINEAAAR------- 274 + + + +A ++ + Sbjct: 241 AATLAEVSKAEAESAAEARDAEELEALRRSLGLEPVEPVPPKLRHHVKRLEEDQTRRRRR 300 Query: 275 --GIEWEALLVEMLGLLHRIAMVQLS--PAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 + +++++GL + VQL + A + Sbjct: 301 AVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRGEIEAYARGAAGDSAEVLAR-ID 359 Query: 331 TLLIGRKELPYAP 343 + R + Sbjct: 360 AVATARGRIAANV 372 >UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSI2_ENCCU Length = 305 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 31/291 (10%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+RP + +VVG V+++L + S GRI + LF G G GKT+ R +A L Sbjct: 2 HQQLTEKYRPGSLLEVVGNREVVSSLQSISSAGRIPN-MLFYGPPGTGKTTSIRAIANNL 60 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR-FK 121 T+ ++E++A+ + R+ + +A + K Sbjct: 61 ----PRTS-------------------VLELNASDERGIATVRETIKE--FASTYSKTMK 95 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE M+SR + NAL + +E+ + +F L +K+ ILSRC +F + Sbjct: 96 LVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDT 155 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +++E I E I + P ++ ++R + G +R A++ Q I++ GQV V Sbjct: 156 E--NRIEEICKRESIKYTPEGIKAVSRISMGDMRKAVNDI-QGISASLGQVDESNVRRFN 212 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHR 291 G L + + + ++ +ALL + L+ Sbjct: 213 GIAPSSVYEELFRNLGSMGMPELRVELERLRYEYSMDCDALLGNLGELVRE 263 >UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGP8_9GAMM Length = 334 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 32/329 (9%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 R+ HA+L +G+ G GK L L C+ + CG C C+ + G DL + Sbjct: 28 AERLPHAFLLAGSPGTGKHRFLLSLCHYLMCQAPLAGAACGKCRQCQLLATGDHPDLKWL 87 Query: 94 DA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 + + KV+ R +++ + + +G +K+ +I ++ ++ NALLK+LEEP + Sbjct: 88 APEEKSRQIKVDQVRAVVEFLSHTSQQGGYKIGVITPAEAMNINAANALLKSLEEPSDKT 147 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 L + P +L TI SRC Q E+ L ++ L R A Sbjct: 148 LLFLVSDSPGQLLPTIRSRCQQVSFPVPPEEESLQWLSTVV------PGQAETNTLLREA 201 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 G AL L Q+ + G+ + + + Sbjct: 202 SGQPLTALDLLSNDGLERRKQLDGDYRVVLGGSASP------------------LVIAEK 243 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 + E +LV ++ LL R+ +++ P+ L + + L++ + D+ Sbjct: 244 WLE--YDLEEVLVRLIVLLTRLIKIKIVPSPLAAATNEEDSWYK-LSQNVDIRDVYSLLD 300 Query: 331 TLLIGRKELPY--APDRRMGVEMTLLRAL 357 ++ R + P+R++ +E L + Sbjct: 301 SIHSIRNAINRGATPNRQLVLEQILFDSC 329 >UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=Lactococcus lactis RepID=D2BNT0_LACLK Length = 286 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 18/282 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + L G++ HAYLFSG G G +A L++ L CE + PCG C +CR Sbjct: 7 QPQLYKQFSTILQHGKLSHAYLFSG--GFGSFELAIWLSQALFCENPENSLPCGHCRSCR 64 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 + Q F DL ++ + K R+L + G+ +V LI E + ++ NAL Sbjct: 65 LVAQQEFTDLHIVEPDGQTIKTAQIRELTQVFNESGYEGKQQVILIKEAEKMHPNAANAL 124 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK++EEP + L T + + TI SR + L+ L + I Sbjct: 125 LKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINFPKN-----VQYLQDFLEKNGIL-- 177 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD--QALSLVEAMV 257 +LLA S AL L Q+ + Q Q V + + D+ LVE Sbjct: 178 KTQAELLAEICN-STDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFD 236 Query: 258 EANG-ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + + L+ + + E + E+L I M + + Sbjct: 237 DKEKQNQAFELLLQLFNQ----ERMSQELLKTFQAIKMWKSN 274 >UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxalobacter formigenes RepID=C3X9N7_OXAFO Length = 355 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 118/352 (33%), Gaps = 63/352 (17%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIE 92 ++ HA LF G G G S A AK CE CG C +C +Q D + Sbjct: 24 ESKLPHALLFYGPAGTGVESFAESFAKARLCENRQPDGNACGGCQSCHWFDQNSHPDFRQ 83 Query: 93 I------------------------------DAASRTKVEDTRDLLDNVQYAPARGRFKV 122 I + + + +E R L D + + RG +V Sbjct: 84 ILPETLEIAKGLDDPDKKTDDDSGASDKKTREPSKKIGIERIRSLADFINISTHRGGLRV 143 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + ++ S N+LLK LEEPP + F+L T L TILSRC + + Sbjct: 144 VSVYPAEAMTTESSNSLLKMLEEPPANTLFILTTNHLDALLPTILSRCSKLAFPMPETSM 203 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 L+ E+ + A LA ++ +++ + +++ Sbjct: 204 AIGWLK----EQGV---DEAESWLAEQG----GAPVTALEESRSGSREEMTL-------- 244 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + + ++ + + + L+ L+ + ++L+ Sbjct: 245 ---------FLAELAAPDDSGLLRTAEKL--QKVPLSDLITWHQRWLYDLLSIRLTG--R 291 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + +A + + +T+ ++ + R+ +E LL Sbjct: 292 ERYYPRYRQELSGMADRVDMDRLLKVLKTVNDRKRVADHPLVPRLVLEDMLL 343 >UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=Halorhodospira halophila SL1 RepID=A1WSZ0_HALHL Length = 351 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 133/333 (39%), Gaps = 37/333 (11%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITATPCGVCDNCREIEQGRFVDL 90 GR+HHA L +G G+GK +A +LA+ L C+ G A PCG C C G DL Sbjct: 36 DQGRLHHALLLTGRTGLGKRLLAGVLARALLCQADEGGGARPCGQCRGCHLTGGGSHPDL 95 Query: 91 IEIDAASR-----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + +SR V+ R L+D + + RG +V +I L+R + N+LLKTLEE Sbjct: 96 RTLSPSSRGERGEIVVDSVRGLVDFLHLSAQRGGSRVAVIVPCDRLNRAAANSLLKTLEE 155 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP V +LAT P +LP T+ SRC L + R L Sbjct: 156 PPPGVFLILATGRPGRLPPTVRSRCTVRGLTPPAWDAARRWLAER--------------- 200 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 A AEG + AL+L +G ++ + + G + L + + Sbjct: 201 -AGGAEGRVDKALAL------AGGMPLTAEQILHEQGLEGYESLLQQLHRLSAGGDP--- 250 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + EA A EAL + +L + + G + + ++ A + Sbjct: 251 --VKEAEAWEGAPEALADAVTAILADLLRQRHGAPDRGLLPSPLAQQLVREA---SVEAL 305 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + R+ L + R+ E L A Sbjct: 306 HQAFLRIGEHRRGLEQPLNGRLAAEAIFLDLAA 338 >UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya RepID=RFC2_YEAST Length = 353 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 125/308 (40%), Gaps = 41/308 (13%) Query: 4 QVLAR-----KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 Q LA+ K+RP+ +V Q+H +T L L + H LF G G GKTS L Sbjct: 20 QSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILAL 78 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----A 114 K L G + + R ++E++A+ + R+ + N Sbjct: 79 TKEL---YGPD------------LMKSR---ILELNASDERGISIVREKVKNFARLTVSK 120 Query: 115 PARG--------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 P++ +K+ ++DE ++ + +AL +T+E +F L ++ + Sbjct: 121 PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-- 224 SRC +F KALD +L I +E++ + L+ + + G LR ++L A Sbjct: 181 ASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240 Query: 225 ---IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 +++ V + G + D + +VE + + + + +N G ++ Sbjct: 241 GAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASV 300 Query: 282 LVEMLGLL 289 + ++ Sbjct: 301 VNQLHEYY 308 >UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actinomycetales RepID=B1VI07_CORU7 Length = 448 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 15/270 (5%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + + Q V LA ++ + H++LF+G G G++ A+ A GL C G C Sbjct: 34 WRKITAQP-VRELLAGAVANPQAMTHSWLFTGPPGSGRSIAAKAFATGLVCPNGG----C 88 Query: 74 GVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C+ C+ G D++ I S VED R+++ + P R++V ++++ L+ Sbjct: 89 GECEQCQSAATGTHPDIVWIATTGSVIPVEDVREVISSAASMPTVSRWRVVVVEDADRLN 148 Query: 133 RHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 NALLK++EEPP H F+L TDP + +T+ SRC ++ +Q+ L Sbjct: 149 EAGSNALLKSVEEPPAHTVFVLCAPSTDPLDISITLRSRCRHVYIPTPSPQQVEDVL--- 205 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 L + + + A + G + A L A + + + + + Sbjct: 206 LQDASLGITQEQARWAAGVSGGHIGRARHLARDEAARTKRATALKLPQMVY---EGARLF 262 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEA 280 S +V E V A + A+ E Sbjct: 263 SFTSQLVAKATEEVAAQVEAVEAKEREALE 292 >UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Tax=Clostridium RepID=B2UY72_CLOBA Length = 310 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 121/339 (35%), Gaps = 37/339 (10%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 +++G E ++ HA L G G+GK+ +A LA + G Sbjct: 3 EIIGHERIINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSILGLKGDKE------ 56 Query: 77 DNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 FVD+I +S V+D R+++ V P KV ++ + ++ + Sbjct: 57 ----------FVDIINYYPLSSSFGVDDIRNIIAEVSKKPFESDKKVLILHKCEKMTIQA 106 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKT+EEPP V +L + + + TI SRC + L L I +E + Sbjct: 107 QNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSKGDITKYIESKYFDIS 166 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 I ++ AL ++G + + + L L+ Sbjct: 167 IENKKAALA----YSQGIPGKVEKFIEDGKLNDLRNI----------------LLDLLCD 206 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + N V+ + + +L ++ + I ++ + +R+ Sbjct: 207 LENNNDNFVLKYKEILPSYKDKQSEVLNILISYIRDIMFLKELDSNDLVVNFDKLKEIRD 266 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ + + + + R L + M + + L+ Sbjct: 267 ISMRMSYKKLNSMLEYIKEARLSLNNNTNYSMTITVLLM 305 >UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenophorea RepID=Q245Y3_TETTH Length = 373 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 131/334 (39%), Gaps = 35/334 (10%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP +V QE V+ +L L G + H + G G GKTS AK L G Sbjct: 47 KYRPNKIEEVSYQEEVIKSLQGVLLSGNLPH-LILHGPPGTGKTSSILAFAKQL---YGP 102 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-----VQYAPARG----R 119 T + R ++E++A+ ++ RD + V P + Sbjct: 103 T------------FYKER---ILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPN 147 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + +AL + +E+ +F + K+ + SRC++F K + Sbjct: 148 FKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIP 207 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +E +LE I E I +E AL+ L + + G LR +++L A + + + + Sbjct: 208 LEAQITKLEEICKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEE 267 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G L + ++ + +++ + + +G + LL + + +S Sbjct: 268 ISGVNYLLCINKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYI-------ISS 320 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 A L LA Q L Sbjct: 321 KDFNEVKKARILEKIALADKGLNERADSELQILN 354 >UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C00 Length = 326 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 128/346 (36%), Gaps = 33/346 (9%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ G E++L+ +AN + + + +F G +G GK +A+ L CE+ + PCG Sbjct: 2 KNIYGNEYLLSTIANMIKNDKAAQSVIFCGEKGSGKRLMAKYYTMSLMCESPVDGRPCGK 61 Query: 76 CDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAP-ARGRFKVYLIDEVHML 131 C+ C ++ G D+I + + VE R +++ P KV + + Sbjct: 62 CNACHNVDMGYHPDVIYAPTSGKLGGYSVETARAVINQAYIKPNNSSGRKVCIFTDCKNT 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N LLK +EEPPE+ F+ TI+SRC+ F + + E+ + L Sbjct: 122 DPRTQNVLLKLIEEPPEYAYFIFTCNSRTDFLPTIISRCVCFGVSTVTDEEAKKALIE-- 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 P + R G++ + + + + Sbjct: 180 ----DDCTPEEAESAVRCFHGNIG-----------MCGDYIRNEELRKQVDLT-----KG 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L ++++ + + A + + + + ++ + L+ A++ +A + Sbjct: 220 LADSIIRKDEYSLNAQLFALGSSRNDVKNVMTMLDKLVRDAAVLGRDKSAELIGCSRETA 279 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPD-----RRMGVEMT 352 L+ I P + + + K + + E+T Sbjct: 280 E--SLSGRITPYQAVRIHNKIELANKAVDCNVTIPLAMAALAAEIT 323 >UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISF8_ACIBL Length = 366 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 63/378 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---T 69 F+D G + + L GR HA + SG RG GK ++A+++AK +NC Sbjct: 1 MPFSDFHGNPATVQSAREMLGRGRFPHAVILSGPRGSGKFTLAQMIAKAMNCLEPPMTDD 60 Query: 70 ATP--CGVCDNCREIEQ------------------------------GRFVDLIEI--DA 95 P CG C NC I Q D++ I D Sbjct: 61 GLPDFCGRCSNCERIAQADDLDARFTEAVEAREGLRETDKKETRILVQTHPDVLIIPPDP 120 Query: 96 ASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 KV+ R ++ ++ Y P +G KVY+ + + + + N+LLK LEEPPE L Sbjct: 121 PQMLVKVDQVRHVIGHIYYKPTQGEHKVYIFPTANFM-KEAANSLLKILEEPPEFATIFL 179 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + +P L TI SRC+Q L+A+ E + L +E R L+AR G + Sbjct: 180 LSENPSSLLATIRSRCVQLRLEAIAPEDVESYL----EKERPEWAARQRALVARLCGGGI 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A + A D L ++ + + + Sbjct: 236 GQARTFD----------------LAAYTAARQDALTLLRSSVAAQDHTELFKVTEG-YRA 278 Query: 275 GIEWEALLVEML---GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 G E + +++ L + + LS + + +LA+++ +Q Sbjct: 279 GAEGKEKTDQLIRASYSLLQDLLYLLSGTPKLVRNTDLGSELTKLAQSVDLGWVQKAALK 338 Query: 332 LLIGRKELPYAPDRRMGV 349 L + R + + Sbjct: 339 LGEVETGMRRNLLRSLSL 356 >UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E5_ACIC5 Length = 368 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 133/369 (36%), Gaps = 60/369 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--- 69 F+D +G E + L ++ GR+ H+ L +G RG GK ++A +LA+ +NC Sbjct: 1 MGFSDFIGNESAVRHLREAVAAGRVPHSLLMAGPRGAGKYTLALMLAQAINCLRQPVTDG 60 Query: 70 -ATPCGVCDNCREIEQ------------------------------GRFVDLIEI--DAA 96 CG C NC I Q ++ I D Sbjct: 61 LPDFCGECANCERIGQAMDLTARVDEAIAAREDLRETDKKETRILVQTHPSVLVIPPDPP 120 Query: 97 SR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 K+ R L+ V P+ R VY+ + + + N+LLK LEEPP H +L Sbjct: 121 QLLIKLGQVRTLIREVYRTPSEARRSVYIFTSASFM-KEAANSLLKVLEEPPSHALIILL 179 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 +P +L TI SR L A+ EQI L +P L+AR AEG++ Sbjct: 180 AENPGELLPTIRSRTSLIRLGAIATEQIEPLLA----SRRGDLKPAERALVARLAEGAVG 235 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA--NGERVMALINEAAA 273 ALS A + + Q + L D + E E+ + LI + Sbjct: 236 RALSFDLPAYLTYRNEA-LQMLRFTLQQNDHSTLFRMTEGYRAGAEGQEKTVGLIRTLRS 294 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 + L GL+ I ++ + +A+ I I+ + L Sbjct: 295 LLEDLLLHLSGASGLVRNI---------------DLQRELSAMAQQIDVEWIERAARGLQ 339 Query: 334 IGRKELPYA 342 + Sbjct: 340 SVESGMRRN 348 >UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas vaginalis RepID=A2DS36_TRIVA Length = 325 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 124/323 (38%), Gaps = 27/323 (8%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP DVV E ++ + + + H F G G GKT+ A ++ L Sbjct: 12 KYRPSKLDDVVSHEACISTIKKFIDKNCLPH-LCFHGPPGTGKTTTAIAISHQL------ 64 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRF-KVYLID 126 + ++E++A+ ++ R + D G K+ ++D Sbjct: 65 -------------YGNDTSMSVLELNASDERGIDTVRMRIKDFASSRSLFGPKIKLIILD 111 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 E ++ + AL + +E+ +V+F+L P+KL + SRC +F + L E Sbjct: 112 ESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKF 171 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L HI + E + + L+ L + G LR +++L S ++ V G Sbjct: 172 LRHIADAEKLNMDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLP 231 Query: 247 DQALSLVEAMVEANGERVMALI-NEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + +E ++ + + + ++ G+ ++ E+ H ++ P + + Sbjct: 232 EDMARTLEQLINKPLDEALNTLNDQVFNNGLSLLDVIREL----HSQVVLMEFPPLVLAN 287 Query: 306 MAAIELRMRELARTIPPTDIQLY 328 + ++ P +Q Sbjct: 288 LIERLAQIERCLAEGSPERVQSA 310 >UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZM0_9PROT Length = 335 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 131/340 (38%), Gaps = 50/340 (14%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVDLIE 92 R+ HA L G +G+GK +A A+ L CE T C C++C EQ D Sbjct: 19 RNRLPHAVLLKGAQGIGKLDLAMNFAQSLLCEKPNADGTACHTCNSCHWFEQENHPDFRL 78 Query: 93 I------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 + + V+ R+L + + G ++V LI ++ + Sbjct: 79 VQPDALSSADEGDEKQGGKKPSREISVDQIRNLSNFANLSAHCGGYRVVLIHPAESMNNN 138 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + N+LLKTLEEP +++ FLL + PQ+L TILSRCL F + E L ++ Sbjct: 139 AANSLLKTLEEPTDNLLFLLISHKPQQLLPTILSRCLGFTVSTPTRELGTAWL----EQQ 194 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + + AL + + AL ++ + + + L+ Sbjct: 195 GVKNPAHALA----QSGFAPLQALGWSESGEGAEERSI-------------------LLN 231 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A+ + + +AL + + + H + +L+ + + Sbjct: 232 AIRQPSKMDALALADGLQRSA--PIYSIHCLQQWCHDLTSAKLAG--MVRYFPEQAGEIT 287 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +LA + + + + LL R+ + + ++ +E LL Sbjct: 288 KLANGVSSDALLRFQKELLEARRAAYHPLNPKLFLESLLL 327 >UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryota RepID=RFC5_HUMAN Length = 340 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 141/330 (42%), Gaps = 24/330 (7%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RPQT D++ + +L+ + ++ R+ H L G G GKTS +LA C + Sbjct: 25 KYRPQTLNDLISHQDILSTIQKFINEDRLPH-LLLYGPPGTGKTST--ILA----CAKQL 77 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR-FKVYLID 126 +E ++E++A+ ++ R +L + FK+ ++D Sbjct: 78 YKD--------KEFGSM----VLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILD 125 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 E +++ + NAL + +E+ E+ +F L K+ + SRC +F L E + + Sbjct: 126 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 185 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 LEH++ EE + ++ L + G +R AL++ Q+ G+V+ + V G Sbjct: 186 LEHVVEEEKVDISEDGMKALVTLSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLK 244 Query: 247 DQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++++ M+ + I E +G+ +L E+ +HR+ L Sbjct: 245 SDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTK 304 Query: 306 MAAIELRMR-ELARTIPPTDIQLYYQTLLI 334 MA IE R+ I + + +Q Sbjct: 305 MADIEYRLSVGTNEKIQLSSLIAAFQVTRD 334 >UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Corynebacterium RepID=C8NKG7_COREF Length = 417 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 135/363 (37%), Gaps = 53/363 (14%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA-AS 97 H++LF+G G G++ AR A L C + CG C++CR D++ I Sbjct: 56 HSWLFTGPPGSGRSVAARAFAAALVC-SDPDEVGCGRCEHCRATLADTHGDVVFIQPHEL 114 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT- 156 ++ R ++D+ P ++V +++ L+ + NALLKT+EEPPE +L Sbjct: 115 SIGIDLMRTVVDDAARLPTVSNWRVIILENADRLTEPAGNALLKTVEEPPERTIIILCAP 174 Query: 157 -TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 TDP+ + VT+ SRC + + I Q+ IL E E A +L A ++ G + Sbjct: 175 STDPEDIMVTLRSRCRHVY---IPTPTI-EQVTRILVSEGGVAEDDA-RLAAASSGGHIG 229 Query: 216 DALSLT-DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A L +Q + + + G SL++ + E + + E Sbjct: 230 RARHLVHNQKVQVRRANILNLSELIFHGDQAFQAVNSLIKGI-EKEMVETLEPLEEQERE 288 Query: 275 GIE-----------------------------------------WEALLVEMLGLLHRIA 293 +E + L+++ G+ Sbjct: 289 KLETSLGMGSRGKGVHKALQGTGGQLKALEDNQKKRRTRFLRDALDLALIDLAGIYRDAL 348 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +V S A +G +E ELA + P + + R+ + ++ + Sbjct: 349 VV-ASGAEVGLTHPDMEGLSTELATKVTPEGLLDCLDAINKSREYFGQNVRPVVAMDALV 407 Query: 354 LRA 356 R Sbjct: 408 GRL 410 >UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX48_CHRSD Length = 323 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 126/341 (36%), Gaps = 37/341 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL-AKGLNCETGITATPCGVCDNC 79 Q + T L R+ HA L SG GVGK +A L A+ L C T CG C C Sbjct: 7 QRDLWTRLVRQQDAQRLPHALLISGPHGVGKHDLADALIARTL-C-HAPGETACGECHAC 64 Query: 80 REIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + G DL++I A + +++ R + V +G +V + ++ + Sbjct: 65 HMLASGYHPDLLDISPAEKRRQIRIDPIRQVNAFVSQTAQQGGHRVIRLHPAEAMNVAAS 124 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK+LEEP E F+L P ++ TI SRC + L D E L L Sbjct: 125 NALLKSLEEPGERTLFVLLADIPSRMLPTIRSRCQHWSLGVPDAESALPWLSERLE---- 180 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + R A G + AL L + G + L +A+ Sbjct: 181 --DAEQARFWLRVAGGLPQFALELVE-------------------GRALRQELRELFDAL 219 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 V +A + ++ +L + L + + ++ A + R+ Sbjct: 220 VRG--AEPVAEAARLDPQSLD--RVLWYGIVWLEDLIRLGVAGDAEHVRNPDLLPLYRQA 275 Query: 317 ARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLR 355 + D R+ + P+ ++ +E L+R Sbjct: 276 VKNARVRDWFRLLDYAREQRRLIAAGGNPNAQLVLEAWLVR 316 >UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Euryarchaeota RepID=RFCS_METVS Length = 315 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 29/335 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ +VVG + ++ L N + + H LFSG+ GVGKT+ A LAK L Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPH-LLFSGSPGVGKTTAALCLAKDL- 60 Query: 64 CETGITATPCGVCDNCREIEQGRFV--DLIEIDAASRTKVEDTR-DLLDNVQYAPA-RGR 119 G + +E++++ ++ R + D + P Sbjct: 61 --------------------YGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAP 100 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKV +DE L+ + NAL +T+E+ + +F+L+ P K+ I SRC F L Sbjct: 101 FKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLK 160 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E + L+ I +E I E + + +EG +R A+++ Q A+ ++ + Sbjct: 161 TEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVL-QTGAAVSKNINETVIYK 219 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLS 298 + D+ + E + + + G+ E +++++ + + + + Sbjct: 220 VASKARPDEIKKMTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKE 279 Query: 299 PAALGNDMAAIELRMRELA-RTIPPTDIQLYYQTL 332 L + + R+ E A I + + L Sbjct: 280 KVHLVEAIGECDFRIVEGANERIQLSALLAKMGIL 314 >UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVJ6_9GAMM Length = 343 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 130/336 (38%), Gaps = 40/336 (11%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 GR+ HA L G GVGK AR LA+GL C+ CG C +C G+ D E Sbjct: 28 EQGRLPHALLLQGAAGVGKGLFARQLARGLLCQNAAGVAACGQCQDCHLSAIGQHPDWHE 87 Query: 93 IDA--------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 + + +V+ R L D++ KV +I H ++ ++ N++LKTLE Sbjct: 88 VTFERTKEGKLSREIRVDQIRALSDSLSLKSHSAGGKVAVIYPAHKMNVNAANSVLKTLE 147 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP LL T P +L TI SRC +Q L ++ ++ P+AL Sbjct: 148 EPSADTFLLLVTDAPSRLLPTIRSRCQSIRFDVPSADQAEQWLASVVADQ----SPQALL 203 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 + G+ A ++ Q + G L+ + Sbjct: 204 ---AMSGGAPLLARQAAEEGWLDERETWFEQLLDIARGKLNPV------------DAAAA 248 Query: 265 MALINEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI--- 320 A + AA+R +EW + +++ +VQ P ++ N + + LA Sbjct: 249 AAGMEVAASRVLEWTVSFCSDLIR------LVQKVPDSVQN--KDHQSTLAALAEHRFAN 300 Query: 321 PPTDIQLYYQTLLI-GRKELPYAPDRRMGVEMTLLR 355 P + + LL GR + + + E LL+ Sbjct: 301 SPQPLYRWCDDLLKAGRYAESASLNAQQLFEDVLLQ 336 >UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15U04_PSEA6 Length = 300 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 19/250 (7%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-----TATPCGVCDNC 79 L L+ + +HHA L G +G+GKT A+ L + L C PCG C +C Sbjct: 9 LQQLSQRAATLSLHHALLLKGEKGIGKTEFAQQLGRFLLCANKPALSKDNLGPCGHCQSC 68 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 G DL EI + + V+ RD + + + KV LI + H ++ S NAL Sbjct: 69 LLSAAGNHPDLYEIRSDKQIGVDAIRDAIKKLSGSAQLSGAKVLLIHDAHTMTESSANAL 128 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEP + LL ++ P++L TILSRC + L + ++ L N+E A+ Sbjct: 129 LKTLEEPTNNTFLLLLSSHPERLLPTILSRCEKVALFSPTQQECIDWL----NKEGYANV 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL L + L L + +V+ Q + LG L+ A A+ Sbjct: 185 DDALLRLYGTS------PLVLIE--HLKTPPKVNYQELVENLGYLNVGTADP--AALATK 234 Query: 260 NGERVMALIN 269 + + ++ Sbjct: 235 WQDEAITIVK 244 >UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2Y1_9PROT Length = 331 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 121/345 (35%), Gaps = 46/345 (13%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIE 92 R LF G +G+GK +A A+ L C+ CGVC +C QG D Sbjct: 19 RERASQGLLFQGMKGIGKLDLAISYARALLCQHPSGNGFSCGVCPSCHWFIQGSHPDFRM 78 Query: 93 IDAAS-------------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 + S + V+ R L D + +G +V +I ++ ++ NAL Sbjct: 79 VQPESETEEVEAGKKPSRQISVDQIRALSDFMGMTAHQGGRRVVIIHPAEAMNTNAANAL 138 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEPP + F+L T P+ L T+LSRCL F + A D L + + + Sbjct: 139 LKNLEEPPPGLLFILVTHKPEVLLPTLLSRCLSFSVAAPDAATATAW----LAAQRVKNP 194 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 L A S A A+ G + + L ++ +A+ + Sbjct: 195 AEVLA----YAGFSPLQAK-----LAANEGGMDVREKLLRALRQPGAMDVFAMADALQKT 245 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 V+ + + + + +++ + + + + L Sbjct: 246 EQVLVVQWLQQ-----------------WCYDLIAQKMAGS--LRYHPSEQAAISALVSN 286 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + ++ L ++E + + ++ E L + Sbjct: 287 LDAINLARLQSYLQTAKRESQHTLNPKLFFESLLFTYCQLTRQSS 331 >UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya RepID=RFC3_SCHPO Length = 342 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 30/294 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP DVV + +++ L +S R+ H LF G G GKTS +LA Sbjct: 21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTST--ILACA 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 R+I + + L+E++A+ ++ R+ + N +A R Sbjct: 78 ------------------RKIYGPNYRNQLMELNASDDRGIDAVREQIKN--FASTRQIF 117 Query: 118 -GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 FK+ ++DE ++ + NAL + +E+ ++V+F + K+ I SRC +F + Sbjct: 118 ASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQ 177 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L ++I ++H++ EH +P A + R ++G +R AL++ QA + + A Sbjct: 178 PLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNIL-QACHAAYDHIDVSA 236 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR-GIEWEALLVEMLGLL 289 + +G +++++ I+ + G+ + +L + L Sbjct: 237 IYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEAL 290 >UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3368A Length = 317 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 37/262 (14%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++GQ T L + +I AYLFSG GVG+ AR K + + + Sbjct: 3 NFQHLIGQTQSTTLLKQIIIKNKIAPAYLFSGPTGVGRRLAARSFCKSIFSLSKVLQE-- 60 Query: 74 GVCDNCREIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDN 110 I G DL I+ + + +++ R++ + Sbjct: 61 NQTTLEHRILNGNHPDLYWIEPTYQYKGKLFTIRQAQENGLKSNSSPQIRIDQIRNITNF 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + P V +I+ M++ + N LLKTLEE + +L ++ L T++SRC Sbjct: 121 LSRPPLESIRSVVIIESAEMMTEAASNGLLKTLEEA-KLATIILIVSNQNLLLPTLVSRC 179 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L + ++ L + E+I +E + + + ++GS A+ +Q Sbjct: 180 QIIPFYNLSEKDLKQVLRK-SDYENIINEEK----IIKLSQGSPGKAIGYWNQL------ 228 Query: 231 QVSTQAVSAMLGTLDDDQALSL 252 Q+ ++ L + SL Sbjct: 229 QLIPSEITDTLEKIPLSYLNSL 250 >UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Thermoplasmatales RepID=RFCS_THEVO Length = 318 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 140/357 (39%), Gaps = 51/357 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++ K+RP++ +++ G++ + L + + + H LF+G+ G GKTS A LA L Sbjct: 3 EIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPH-LLFAGSVGTGKTSTAIALAIELF 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPAR-GRFK 121 E+ + IE++A++ ++ R+ + D + P+ FK Sbjct: 62 GESWKE-------------------NFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK 102 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE L+ + AL +T+E E +F+ A K+ I SR + + + E Sbjct: 103 ILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDE 162 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ +L I E + +++ + + G +R A+++ G++S + + ++ Sbjct: 163 FIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQ--AVYTSGEISPKKIYEII 220 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L+ + + ++++ G+ ++ + ++ Sbjct: 221 GYASPESVNKLISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVR---------- 270 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A +PP + L + + R+ ++ + R Sbjct: 271 ----------------ASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLDALIARIA 311 >UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DZ6_DECAR Length = 339 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 77/343 (22%), Positives = 136/343 (39%), Gaps = 49/343 (14%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVDL- 90 R+ H+ L G +G+GK +AR A L CE+ CG C C EQG D Sbjct: 17 RRERLPHSLLLVGQKGLGKFELARRFAASLLCESPQSNGLACGKCLACNWFEQGNHPDFR 76 Query: 91 ----------IEID-----AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +E++ + + ++ R L + RG ++ +++ ++R + Sbjct: 77 LLQPDALGEDVEVEDGKKKPSQQITIDQVRALDEFFNVGTHRGGLRIVIVNPTEAMNRST 136 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N+LLKTLEEP FLL +++P +L TI SRC + + ++ IL +E Sbjct: 137 ANSLLKTLEEPSADTLFLLVSSEPMRLLPTIRSRCQVVPV-PVPSAKLAG---KILADEG 192 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG----TLDDDQALS 251 + R L L A GS AL L A+ + + A LG A Sbjct: 193 LQQSERWLAL----AGGSPVLALDL-----AASGQSAWIELLVARLGNGRNADPLAMAAE 243 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L +A+ ++ G+ ++ + + + L + + + + Sbjct: 244 LEKAVKDSKGKLLLKHV-------------VEGVQKWLVDLTLAK--NGMPVRYFLPQQP 288 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + LA IP + Y+ ++ R+E + R+ +E L Sbjct: 289 TISGLADMIPAARLIHSYRAVISRRQEAEQPLNARLFLEGLFL 331 >UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Corynebacterium RepID=Q8NTJ5_CORGL Length = 419 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/363 (17%), Positives = 126/363 (34%), Gaps = 51/363 (14%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 97 ++LF+G G G++ A++ A L C CG C++CR G D+ I Sbjct: 57 AQSWLFTGPPGSGRSVAAKVFAATLVCSN-PDVVGCGQCEDCRAAMGGSHPDIEHIVPQQ 115 Query: 98 -RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA- 155 V+ R+++ +P G ++V + + L+ + NALLKT+EEP E +L Sbjct: 116 LSIGVDAAREVIKAAAVSPVAGNWRVVIFENADRLTMQAANALLKTVEEPTESTVMILCA 175 Query: 156 -TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 TTDP+ + +T+ SRC ++ + ++ IL E +L A A+ + Sbjct: 176 PTTDPRDIAITLRSRCRHLYIPTPSIAEVA----RILVAEG-NVSQADAELAAAASGAHI 230 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAM--VEANGE--------- 262 A L A + G + +LV+ + + Sbjct: 231 GRARYLAHNNAAQRRRASILNLAELIFHGDVAFRSVNTLVKMVETEAKDSNKEKEEAELE 290 Query: 263 --------------------------RVMALINEAAARGI---EWEALLVEMLGLLHRIA 293 + + + + LV++ G+ Sbjct: 291 AVRISLGMGAKGKGVHKAVRGGAGDFKALEDQQKLRRTRFLRDSLDLALVDLAGIYRDAI 350 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ +G +E +ELA + + + R+ + + ++ + Sbjct: 351 IISSQAQ-VGLTHPDMEGLSQELATKVSQEGLLACLDAISKCRESFGFNVRPIVAMDALV 409 Query: 354 LRA 356 R Sbjct: 410 GRL 412 >UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSK5_THISH Length = 321 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 37/345 (10%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCR 80 E L L+ GR+ HA L +G G+GK ++A LA C G+ PCG CD+CR Sbjct: 9 EDAYRQLLGRLAGGRLPHALLLTGPVGIGKRALAESLALAALCTAPGVEGAPCGHCDSCR 68 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 DL + + ++ V+ R+L + + + + G +V L+ ++ ++ N Sbjct: 69 LYRADTHPDLTRVTIPEDKTQIVVDQIRELSETMGLSRSMGAHRVALLWPAEAMNPNAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLKTLEEPPE +L + +P +LP TI SRC + L ++I L + + Sbjct: 129 SLLKTLEEPPERTLMILVSAEPSRLPATIRSRCQTLAV-PLPPDEIT---RAWLAGQGVQ 184 Query: 198 HEP-RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 AL LAR G+ A L ++ + A+LG L Sbjct: 185 AGQVDALLCLAR---GAPLVARDLAEEGA--------LEQWHALLGDLSQ---------- 223 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + +AL A+ E ++ + +IA+ + + A AA ++ L Sbjct: 224 LTRGKTGTVALAERWKAQDTE------RLIRWV-QIALWESARIAFTGRAAAGREDLQPL 276 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 A+T+ I L R+ + +M +E Sbjct: 277 AKTLDLGRIFQLQDRLTEWRRLARTTVNPQMLLEEVFAGLAPGRA 321 >UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protein n=1 Tax=Ralstonia phage RSL1 RepID=B2ZY37_9CAUD Length = 362 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 42/303 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ RK+RP T V+GQE ++T L LS G+I A F G GKT++ R +A Sbjct: 1 MTQVAFHRKYRPTTLDRVIGQEKIVTRLKGMLSSGKIPSAIAFFGPPSAGKTTLGRCVAH 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN E+ + D E+DAA V+ RDL+ N ++ P R + Sbjct: 61 ALN-----------------ELPVEKQTDYKEVDAADERGVDAVRDLIRNSRFRPQRNK- 102 Query: 121 KVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT-----ILSRCLQF 173 ++ LIDE + ++ + ALLKTLEEP +++ + +P+K T ILSRC QF Sbjct: 103 RIILIDEAQQIVSNQVAAQALLKTLEEPSPDTLWIICSMEPEKFGTTRTGKAILSRCTQF 162 Query: 174 HLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLR------DALSLTDQ 223 L+ + Q I E +++ E L+ L R +R AL + Sbjct: 163 VLQEPSESDLLKQAVRIAKGEGMSYAMDEERTVLKALVRGCNREMRTLANLMQALQQYYE 222 Query: 224 AIASGDGQVSTQAVSAMLGTL---DDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 + ++ T+ ++ ++ ++ DD+ A L+ + + A + + Sbjct: 223 GLDKKPKKLGTEHLADLISSVESPDDELAADLMIGVYSKQYAA----VQRALLDVSDPYS 278 Query: 281 LLV 283 + Sbjct: 279 FVK 281 >UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY72_9BACT Length = 381 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 129/385 (33%), Gaps = 66/385 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQ + L G+ GR+ HA LF+G G G +A + LNC Sbjct: 1 MRFSEVIGQRELKRHLVRGVDAGRVSHAQLFTGRPGAGALPLALAYVQYLNCTNRRDGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVED----------------------------- 103 CG C NCR+I DL + ++ + Sbjct: 61 CGECPNCRQIAGLAHPDLHFVFPVNKQGKKSGEAVLSDDFMPLWRQVVSERNGYFSPQEW 120 Query: 104 ---------------TRD---LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 R+ ++ + + ++K ++ ++ + N +LK LEE Sbjct: 121 YDRLDLGRTLKGAISAREADGIIRKLSFKSFAAKYKCVIVWLPETMNEEAANKILKILEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P E F+L + P L TILSR + + L E++R +LE +P ++ Sbjct: 181 PWEKTLFVLVSERPDLLLPTILSRTQEVVVPRLTDEEVRAELERRGER-----DPEKIRT 235 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 R A G D + L + + ++ D + SL+ +M Sbjct: 236 FTRLAAG---DLIEL-EHLLRGEGDELRKD---------DFEFFCSLMRLSYNDKHLELM 282 Query: 266 ALINEAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 A E A E + L + LL ++ + R A I + Sbjct: 283 AWAEEVAQLSREQQRAFLTNAVRLLRESYLLHAGLGEISCLWGEEAKFCRNFAPFIGNQN 342 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGV 349 I+ ++ + + Sbjct: 343 IESLVAEAESAMAQIRQNGNPTIVF 367 >UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URT3_9AQUI Length = 315 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 106/306 (34%), Gaps = 58/306 (18%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V L R LF G GVGKT+ A A+G C CG C +C Sbjct: 6 QSAVRELLERIQKEKRYPGGLLFYGLSGVGKTTAALDFARGALCLEEKEWG-CGSCSSCL 64 Query: 81 -----------------------------EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDN 110 + G D I + +++ R + D Sbjct: 65 HYDRVAEDILSGKWEGISLYDESDGKKILKYLSGEHPDFIYVPPYGGSLRIDQIRAVKDF 124 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 PA KV ++++ H ++R + NALLK LEEPP F+L + +L TI+SR Sbjct: 125 AYMRPALSHRKVVVLEDSHTMTREAGNALLKVLEEPPSDTLFILISESKDQLLPTIVSRT 184 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 Q L+ E L EE+ + L R + GS A + D+ Sbjct: 185 YQVEFHPLEEEVFYSLL----GEEN--------EELYRVSGGSYSLAKLIKDRGEVL--- 229 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVE--ANGERVMALINE-----AAARGIEWEALLV 283 + V L D ++ + E + L+ + +G+ ++ Sbjct: 230 ----KMVDDFLSLKPDTVYQVAIKLDKSEPEDRELFLELLEDRLRKTFLDKGLNYDKF-E 284 Query: 284 EMLGLL 289 +L + Sbjct: 285 MLLDRI 290 >UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0ERC2_ENTDI Length = 329 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 143/327 (43%), Gaps = 38/327 (11%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Q + K+RP+T DV GQE V+ L + L G + + LF G G GKT+ +LA Sbjct: 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPN-LLFFGPPGSGKTTS--ILA 56 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARG 118 E+ QG F + ++E++A+++ +E R L N Sbjct: 57 VA------------------HELFQGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTH 98 Query: 119 -----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 +K+ ++DE L+ + AL + +E+ ++ +F L ++ I SRC++F Sbjct: 99 YDGIPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 AL E + ++L+ I +E + A+Q ++ +EG LR + L + + V+ Sbjct: 159 RFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVT 218 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERV-MALINEAAARGIEWEALLVEMLGLLHRI 292 Q +S + G + + ++ + + + ++ + +++L ++ + Sbjct: 219 PQDISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLVVEQNYSADSILSQL----RDV 274 Query: 293 AMVQLSPAALGNDMAAIELRMRELART 319 + + L ++ +A++ Sbjct: 275 YI----EDCVNLTNQERCLFLQLIAQS 297 >UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9B3_9FIRM Length = 314 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 119/319 (37%), Gaps = 39/319 (12%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L+ + GR HA L G G GK + A L+A+ C PCGVC C ++E+G Sbjct: 14 LSGMAAGGRFPHALLLEGPAGCGKKTAAALIAQERLCTGAP--RPCGVCSGCIKVEKGVH 71 Query: 88 VDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D+ + VE RD+ + AP G KVY++D+ H ++ + NALLK +E Sbjct: 72 PDVRFYTVPEGKKEFPVELARDIRQDAYIAPNEGACKVYIVDQAHTMNASAQNALLKIIE 131 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP V F+L + ++ TILSR + L+ ++ L + + Sbjct: 132 EPPAGVYFILLCENRAQMLPTILSRVVSVELETPSPDECAAALASL----EPDVPEEQRR 187 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 A A G++ A +L A S D + L EA+V + Sbjct: 188 AAAAGAAGNIGQARALLKTAKPSK--------------AAADARLLR--EALVFGDRYTA 231 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + ++ L + ++A+ + + A + + P Sbjct: 232 LRILAAYDKDRAALGQTLALLREGFAQVALGRETDA--------------RFSNRVSPGQ 277 Query: 325 IQLYYQTLLIGRKELPYAP 343 Q + R Sbjct: 278 AVAAAQIVQTARLRAERNT 296 >UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharomycetales RepID=RFC3_YEAST Length = 340 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 131/291 (45%), Gaps = 29/291 (9%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+T +V GQ V+T + + G++ H LF G G GKTS LA Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALA--------- 67 Query: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRD-LLDNVQYAPARGR-FKVYLI 125 REI + + ++E++A+ ++ R+ + D + FK+ ++ Sbjct: 68 -----------REIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIIL 116 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE ++ + NAL + +E ++ +F + KL +LSRC +F + L E I Sbjct: 117 DEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIER 176 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----QVSTQAVSAML 241 ++ ++L E + P A + L + G +R L++ A+ D ++S + Sbjct: 177 RIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHR 291 G +++++++E + +N+ +A+G+ L+ ++ +L Sbjct: 237 GAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED 287 >UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S906_LEPBA Length = 310 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 111/291 (38%), Gaps = 41/291 (14%) Query: 14 TFADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F V GQ+ LT + + L +I + +F G GVGK A A+ + C G + Sbjct: 7 SFEQVSGQDVALTYIKSFLKDRSKIPGSLIFYGPDGVGKWLAAERFARQILCLEGTS--- 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVED--------TRDLLD-NVQYAPARGRFKVY 123 CG CD+CR+ +G D I+ + R LL + + P +++ Sbjct: 64 CGHCDSCRQFMRGIHPDFIQFPRRKNIAIGKEKDPEEFTIRWLLSARIPFKPHTSDYRIV 123 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 L E + ++ + LLKTLEEPP H KF+L D L TI+SR + L ++I Sbjct: 124 LFPEANRINNEAETTLLKTLEEPPPHTKFILIVNDLHNLKQTIVSRSVCIPFHYLPQDEI 183 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 + I E L GSL + + D+ + V ++L Sbjct: 184 ----KKIRRNE---IAEAKLYY-----GGSL-NPFEIADEFLEEWHENVREHCHDSIL-- 228 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAA--RGIEWEALLVEMLGL-LHR 291 L E + GI++ ++ +L + Sbjct: 229 -----LFKL-----ENWVRDQLGEFRSNKEGLTGIDFLEMICLLLLYEYRQ 269 >UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalobacteraceae RepID=A6SZH8_JANMA Length = 344 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/355 (19%), Positives = 122/355 (34%), Gaps = 69/355 (19%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLI- 91 R+ HA LF G G+GKT+ A A+ L CET CG C C Q D Sbjct: 20 RERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACGSCIACGWFTQYSHPDYRR 79 Query: 92 ---EI------------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 EI + K++ R L D + + R +V + Sbjct: 80 VRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRALGDFMNISTHRSGMRVVV 139 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + +L+ + N+LLK LEEPP FLL + +L TILSRC +F L ++ Sbjct: 140 LYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGRDEAL 199 Query: 185 HQL--EHILNEEHIAHEPRALQLLA-RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 L + + + E L A A++ +R Sbjct: 200 QWLKSQQVSEADGWLAEQGGAPLAAFDASQAGMR-------------------------- 233 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + + + + + + + + L+ + L+ + V+LS Sbjct: 234 -----ETMDDFLRQLAQPGVDGALKAADRL--QKTPVPELVAWLQRWLYDVLSVKLSGT- 285 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLR 355 + + LA+ + + + + R+ + P ++ +E LL Sbjct: 286 -IRYYPRYKKELGALAQRVETAALLQEIKAVND-RRAIAEHPLAPKLFIEDMLLE 338 >UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax=Eukaryota RepID=RFC4_DICDI Length = 347 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 29/291 (9%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+T DV QE V++AL L+ G + H LF G G GKTS +LA + Sbjct: 15 KYRPKTVDDVSYQEDVISALKKSLNTGNLPH-LLFYGPPGTGKTST--ILAIAM-----D 66 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR---------G 118 P E+ + R ++E++A+ +E R + + YA + Sbjct: 67 IYGP--------ELMKQR---VLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGA 115 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE ++ + AL +T+E + +F L ++ + SRC +F K L Sbjct: 116 TFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPL 175 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 D +L+ I +E I E Q + + G +R A++ A ++S + Sbjct: 176 DTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIY 235 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + G+L LV+ + + +R+ +++ A+G ++ ++ + Sbjct: 236 NIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYV 286 >UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable n=2 Tax=Ostreococcus RepID=A4RSQ7_OSTLU Length = 332 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 65/342 (19%), Positives = 134/342 (39%), Gaps = 28/342 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP ++VV + ++ + G++ H LF G G GKTS LAK L Sbjct: 13 LPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPH-LLFHGPPGTGKTSTILALAKEL- 70 Query: 64 CETGITATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQ--YAPARGRF 120 F + ++E++A+ + RD + + P F Sbjct: 71 -------------------YGLNFSNMVLELNASDARGINVVRDEIQSFASTMRPFSTTF 111 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE +++ + AL + +E+ +H +F L K+ + SRC +F + Sbjct: 112 KLVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIAS 171 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + +L HI+N E+ + +L + + EG +R +++ Q+++ V+ A+ + Sbjct: 172 GDMLQRLRHIVNSENFSISDNSLATIQKLGEGDMRKTVNIL-QSVSLSASVVTDDAIHLI 230 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSP 299 G + Q L+ ++ + N + ++ + L + M + Sbjct: 231 TGHVGQLQVDELLRFLLNEPLQGTFEHFNRLKCTQNFALVDIVKPLSESLLTLHMAAGTR 290 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 A L ++ IE + A + + R E+ Sbjct: 291 ARLLRGLSDIEYSL-SFACSEKNQTLY-LISLFHQARFEMTR 330 >UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Acetobacteraceae RepID=Q0BT78_GRABC Length = 342 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 31/273 (11%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + + G E LA+ + GR+HHA+L +G G+GK ++A A+ L + Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65 Query: 72 PCGVCDN------------CREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDN 110 R + DL+ I+A + V+D R++ Sbjct: 66 SQHEKKADSPLWLSPEHPVFRRVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREIASF 125 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + PA G ++V ++D L+RH+ NALLK LEEPP LL+ + P +L TI SRC Sbjct: 126 LHLTPAEGGWRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTIRSRC 185 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+AL+ ++ L +L LLA AEG+ AL L + DG Sbjct: 186 RMLRLQALEAAPMQDVLATLLP----DLAAAERDLLAGLAEGAPGRALQLAKE-----DG 236 Query: 231 QVSTQAVSAMLGTLDD-DQALSLVEAMVEANGE 262 ++ +L L + + + + Sbjct: 237 LALSRLAEDILRAPPSASHRYDLADMLTKGDTA 269 >UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM2_9EURY Length = 315 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 22/282 (7%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RPQ+F +++GQ+ ++ L I H + SG GVGKT+ A +LAK + G Sbjct: 7 KYRPQSFDEIIGQKEIVEKLKAMAEKKEIQH-MILSGPPGVGKTTSAVVLAKAVF---GP 62 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDE 127 T + IE++A+ K+ + + + + P FK+ L DE Sbjct: 63 DWT----------------QNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIILFDE 106 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 L++ + AL + +EE +F+ + + + SRC + L E + + Sbjct: 107 ADSLTQEAQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVHKFI 166 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 + I E + + A+ L + G LR L Q++++ ++ +AV G +D Sbjct: 167 KRIAESEKLDIDKEAMDALDYVSRGDLR-TLVNLMQSLSNVSKKIDAKAVLQSSGLMDIS 225 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + ++ + + ++ + +E G+ + LL+ + ++ Sbjct: 226 KTIDGLKTALSGDFKKSREIFSEIIDNGVNMKELLISIFNVI 267 >UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3S2_9PROT Length = 324 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 8/239 (3%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G + V L R+HHA+L G +G+GK +A L L C++ CG C Sbjct: 7 VLGHQRVELRFTEALKQQRMHHAWLLYGMKGIGKRMLAERLTGLLMCDSHND---CGECH 63 Query: 78 NCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 CR + G D+ + + +E R +L + + + G +V ++D+ L+ Sbjct: 64 GCRMLAAGSHPDVYRVGLAEGKRDVNIEQVRQMLGFLSLSGSEGERRVVILDDAERLNHQ 123 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK LEEP L+ D ++LP TI SRC+ L +R L+ L E Sbjct: 124 AANALLKGLEEPSAGSVLLMVCADLERLPATIRSRCMLQQCMPLAEHDVRRILDASLMEG 183 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + L+L AEG SL D+ IA D ++ QA+ A L D + + Sbjct: 184 DNKPDVATLELAVELAEGCPGMVASLQDKKIA--DALLAWQALIAQLDHADIGRVDEWI 240 >UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxiella burnetii RepID=A9NBZ0_COXBR Length = 319 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 125/325 (38%), Gaps = 35/325 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE + GR+ HA L +G+ G+GK A+ +A+ + CE CG C C+ Sbjct: 11 QEILTRY-----RQGRLPHALLLTGSPGLGKFDFAKAVAEFILCEA-QDGGVCGSCRGCQ 64 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D ++ + + K+ R+L++ + ++V +I ++R + N Sbjct: 65 LFRAGNHPDFFKLIPEEKSKNIKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAAN 124 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A LKTLEEP + +L + P L TILSRC + A E L+ E Sbjct: 125 AFLKTLEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQK--QIEGDR 182 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 E L A A AL L ++ V D+ L L+ + Sbjct: 183 REAIQLLTAASYA---PLQALQL---------KSLNYTEV--------RDRLLQLIINLT 222 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 E +++ + +L ++ + + +QL A + + ++EL+ Sbjct: 223 AQ-RENAVSVAGTLLKE--DLPFVLQVLILIAMDLLRLQL-KATNFVVNSDQLILLQELS 278 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYA 342 +P I L Q L + + Sbjct: 279 TALPQNKIMLLLQELQEAWRLTKNS 303 >UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseudomonadaceae RepID=HOLB_PSEAE Length = 328 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 121/323 (37%), Gaps = 29/323 (8%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID--- 94 HAYL G G+GK ++A A L C+ A CG C C+ + G D ++ Sbjct: 22 AHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGACGECKACQLLAAGTHPDYFVLEPEE 81 Query: 95 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 A +V+ RDL+ V G KV L++ ++ ++ NALLK+LEEP LL Sbjct: 82 AEKPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAANALLKSLEEPSGDTVLLL 141 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + P +L TI SRC+Q L L +E AL+ L + GS Sbjct: 142 ISHQPSRLLPTIKSRCVQQACPLPGAAASLEWLARALPDE----PAEALEELLALSGGSP 197 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A L Q + QV + V +L + + + + Sbjct: 198 LTAQRLHGQGVREQRAQV-VEGVKKLLK-----------QQIAASPLAESWNSV------ 239 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 L I QL+ G +A + ++ L + LL Sbjct: 240 --PLPLLFDWFCDWTLGILRYQLTHDEEGLGLADMRKVIQYLGDKSGQAKVLAMQDWLLQ 297 Query: 335 GRKEL--PYAPDRRMGVEMTLLR 355 R+++ +R + +E L++ Sbjct: 298 QRQKVLNKANLNRVLLLEALLVQ 320 >UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8W7_MACCJ Length = 306 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/339 (18%), Positives = 128/339 (37%), Gaps = 46/339 (13%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSI---ARLLAKGLNCETGITATPCGVCDNCREI 82 L + ++ HAYLF G K ++ A + A + C C I Sbjct: 2 QQLMQAIKNNKLSHAYLF---EGSNKQALKEEAIIFASAIIC---GDDEVCHT-----RI 50 Query: 83 EQGRFVD--LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 D ++E D A+ K E + L + P G +KVY+I + ++ N++L Sbjct: 51 AAHNHSDFFIMETDEAT-IKKEMIEEALHKMNQKPIEGSYKVYIIVDFDKVTTQGENSIL 109 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEPP + LL T+ P ++ TI SRC ++ + I L E I Sbjct: 110 KFLEEPPGNTIALLLTSAPNEILPTIHSRCQHISVQN--RQDILLTLS-----EQI---- 158 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 L + + S D +S G + Q ++ ++ ++ + Sbjct: 159 -------------PTPLLMTLSKLMMSEDEAISW-YTEKNFGEI-RSQVVNWLQTLLNGD 203 Query: 261 GERVMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 ++ + + + + + L + L I +QL+ ++ + E+ ++ +++ Sbjct: 204 MMGLIQVSQLQSYISERVYQQIALDMVQLFLQDILYLQLNEQSVSS-YPDYEVAIQRISQ 262 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 I + L +++L + + E ++ + Sbjct: 263 KITIQQSINMIEAALNAKQKLLQYVNAALVFEQMAIKIV 301 >UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D911_9ACTN Length = 378 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 124/361 (34%), Gaps = 37/361 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q HV + + ++ HAYLF G G+G + LAK L C G C C+ Sbjct: 18 QAHVCSFFKQAYAQRQLSHAYLFIGNYGLGISEALDELAKMLLCPHGGD-----ECACCK 72 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 I D+ + VE DLLD V AP + + K+ +I E L NA Sbjct: 73 RIMHKSHPDVHQFYPQGAQGYVVEQIHDLLDVVHRAPIQAKRKLIVIHEAQSLGASCANA 132 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE--EHI 196 LLKTLEEPP V F+L +T ++ T+ SRC ++ Q +E E Sbjct: 133 LLKTLEEPPASVYFVLVSTSAAQVLQTVSSRCQHIPFTFINQAQAAKLVERAAASTPEQA 192 Query: 197 -------AHEPRALQLLARAAEGSLR----------------DALSLTDQAIASGDGQVS 233 A+ L +++ ++R D + L D+ + Sbjct: 193 RWALYIKQSPKAAIDFLRSSSKMNIRSKIMHIFAIMPDADSWDLIELADELCVLIQIPLD 252 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + D D++ + A + V + A+ I E ++ LL Sbjct: 253 QKTDEQ---QADFDRSQDFLSAGARKKMQAVHKR-ELSRAQQISVEEIIDISASLLRDAM 308 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 A LA + + ++++ ++ +E Sbjct: 309 FFSEGAHA-EIMNQDAVNICDCLAACASTDAMLATLAYVARAKQQMRAHVSAQLVLEAFF 367 Query: 354 L 354 L Sbjct: 368 L 368 >UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aeromonas RepID=A0KKI0_AERHH Length = 315 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 120/321 (37%), Gaps = 34/321 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 AL+ + GR+ HA+L G G+GK +A LA+ C PCG C +C+ E+G Sbjct: 10 HALSQTAAAGRLGHAWLLLGDPGLGKEQLAEQLARLHLCHRPERGEPCGQCHSCQLFEKG 69 Query: 86 RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 DL + S+ VE R++ +Q + GR KV +I + ++ + NALLKTLE Sbjct: 70 HHPDLGTLTTESKTIGVEAIREICSRLQNSAQLGRGKVVIIPDAERMTESAANALLKTLE 129 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP LL + +L TILSRC + H+ L E + + + H +A Sbjct: 130 EPAGDSLLLLIASQVSRLLPTILSRCHK-HVCQLPAE--GETVRWLAEQGH-----QATL 181 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 R +G+ L ++ S + ++ + L+ ++ + Sbjct: 182 AQVRICQGAPLRVLRYIEEQQDSARRDLLESFLALAQTPTRANHVCGLL----ASDTQVR 237 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + + L Q M + +LA Sbjct: 238 LHWLQ-----------------LFLCDALKTQAGCGHHQLAMPDLTALSLQLAELHSSEK 280 Query: 325 IQLYYQTLLIGRKELPYAPDR 345 + Q L+ EL A Sbjct: 281 LLEAEQQLV----ELKMACQP 297 >UniRef50_Q46HP5 DNA polymerase III, delta prime subunit n=2 Tax=Prochlorococcus marinus RepID=Q46HP5_PROMT Length = 319 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 131/369 (35%), Gaps = 84/369 (22%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL---NCETGITAT 71 F ++ GQ+ + L + +S I HAYLFSG GVG+ A++ + N E T Sbjct: 4 FQNIFGQDLAIKILKSAISKEHISHAYLFSGPEGVGRKKTAKIFINSILDKNQEKKSTK- 62 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAA-----------------------SRTKVEDTRDLL 108 +I DL+ ++ + + ++ ++++ Sbjct: 63 --------IKINNNNHPDLLWVEPSYIVQGQSISQTKAILDGISMKSPPQIRLNQIKEII 114 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 + + P + +I+++ ++ + NALLKTLEE F+L T P+KL TI S Sbjct: 115 EFLGKKPFESERSIVIIEDIERINESAANALLKTLEET-CTGLFILITQRPEKLLSTIRS 173 Query: 169 RCLQFHLKALDVEQIRHQLEH-ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 RC L+ Q+ ++ + +E +Q L + GS + Q S Sbjct: 174 RCQIVPFIRLNDNQVNKIIKKSEVIQEIDDITSNKIQELIDFSYGSPGRCIVNL-QFWLS 232 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 + + + N ++ L E + E L Sbjct: 233 LSTSLRQKLEIQL------------------NNPIELLKLAKEITDE-LNIEQQL----- 268 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 L Q + A + + I +++ EL RK+L R+ Sbjct: 269 WLID---FQQNRAWIKEKNSNIVIQLEEL-------------------RKQLLKFVQPRL 306 Query: 348 GVEMTLLRA 356 E+TLL Sbjct: 307 AWEVTLLEI 315 >UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CVS5_CRYPV Length = 335 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 123/303 (40%), Gaps = 33/303 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + K+RP D+ + V++ L++ L G + H LF G G GKTS L++ Sbjct: 4 MSSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPH-LLFHGPPGTGKTSAVLALSR 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR- 119 L ++E++A+ + RD + + + Sbjct: 63 ELFGPNEYKNR------------------ILELNASDERGISVVRDKIKSWTRQVVQCNK 104 Query: 120 -----------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E ++ +F++ K+ + S Sbjct: 105 THEITGNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLAS 164 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IA 226 RC +F + + +L++I ++E +++E L+ + ++G LR +++ A + Sbjct: 165 RCAKFRFQPISANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELF 224 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 D ++S ++ + G ++ + E ++ + G E + + Sbjct: 225 GKDKRISMSSILDVSGVPPIKIIERIINSCKILGVESILIETAKLINEGWSVELIFKGLA 284 Query: 287 GLL 289 + Sbjct: 285 EFI 287 >UniRef50_Q1AUM0 DNA polymerase III, delta prime subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUM0_RUBXD Length = 359 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 124/360 (34%), Gaps = 36/360 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F +VG L L L G + HAYLF G GVGK ++AR L G G Sbjct: 7 FEGIVGNRAALRLLERALRSGEVSHAYLFHGPEGVGKRTVARRFGAAL--VAGGDEAALG 64 Query: 75 VCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 +G DL E++ T + R++L P G +V+++ L+ Sbjct: 65 ------RALRGLHPDLTEVEPEGAFTTIGQVREVLRLAASRPFEGSRRVFVL-RADTLNL 117 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH---I 190 + NALLKTLEEP FLL + + TI SR + V ++ L Sbjct: 118 QAANALLKTLEEPEGEAVFLLLAASREAVLPTIASRAQAVRFDPVPVGEVAGFLARRGFA 177 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV-STQAVSAMLGTLDDDQA 249 A ++ L R A G L L + + + G + + V G + Sbjct: 178 EAGLAAALGRGSVGLALRYAGGELG---ELREAVLEAALGPLGDFEDVHRAAG-----RI 229 Query: 250 LSLVEAMVEANGERVMALINE-------------AAARGIEWEALLVEMLGLLHRIAMVQ 296 +L E + EA ++ E AAR L + + A V Sbjct: 230 TALAERVGEAREREALSAAEEPDRAARERARRAGRAARDGAVREALGLLCSVYRDAAAVA 289 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L A +R + R P D +L Y +E+TL Sbjct: 290 AGAPELV-INADRGEELRRIVRERPGADWAGAAARAGEAALDLSYNVSPEAILEVTLSEL 348 >UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=Piroplasmida RepID=A7ATE5_BABBO Length = 348 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 50/356 (14%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP++F+D++ + +L+ L N G++ H LF G G GKTS +++ L Sbjct: 12 KYRPESFSDIISHDDILSTLMNFAEKGQLPH-LLFHGPPGTGKTSTIMAVSRYL------ 64 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-------------QYAP 115 R ++E++A+ +E R+ + + Sbjct: 65 -------------YGSHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSG 111 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 R K+ ++DE ++ + N+L + +E +V+F L ++ I SRC F Sbjct: 112 PRTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRF 171 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD----QAIASGDGQ 231 L + ++ + I E + AL LA +G +R L+ A+ D Sbjct: 172 PPLKNDVVKRRTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKV 231 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEM-LGLL 289 +++ V + G + + L++ +++ + + + + +G E L+ + +L Sbjct: 232 ITSDVVISTAGLPNPTEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSIL 291 Query: 290 H----RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 + +VQ L + IE R+ A P I R E+ Sbjct: 292 RIDWPNVVIVQ-----LLIRLGDIEQRLS--AGASPYIQIASLVSAFAEVRLEIER 340 >UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=cellular organisms RepID=Q11HZ8_MESSB Length = 354 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 41/309 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VG E+ + LA+ G++HHA LF+G G+GK ++A LA L P D Sbjct: 25 LVGHENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRLGPLDFSD 84 Query: 78 N------CREIEQGRFVDL-------IEIDAASR--TKVEDTRDLLDNVQYAPARGRFKV 122 R QG + +E D + V++ R + + P G ++V Sbjct: 85 IDTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSLTPPDGGYRV 144 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++ ++ NALLK LEEPP F+L T +L TI SRC + L L Sbjct: 145 VIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKLDPLSPGL 204 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML- 241 + L+ + + +LL + A+GS RDA+ LT+ G ++ QA+ +L Sbjct: 205 LEKLLQSLGAS--LPETEEERRLLIQRAQGSARDAILLTE----FGGLEI-EQAIENLLE 257 Query: 242 -GTLDDDQALSLVEAMVEANGERVMALINEA-----------------AARGIEWEALLV 283 D A L EA + L N A A+ + Sbjct: 258 QRRFDVPAAYKLAEAATGRERQVQFDLFNRAVLDRVANAASHSASAGDIAQAERFANFWE 317 Query: 284 EMLGLLHRI 292 E+ + ++ Sbjct: 318 ELAETIRQV 326 >UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=Psychromonas RepID=A1STW9_PSYIN Length = 342 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 11/239 (4%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V L N GR HA LF+G G+GK + + LAK L C A+ CG C +C+ E Sbjct: 18 VFKQLINTFQAGRFAHALLFTGCAGIGKFELGKHLAKYLLCSNKQAAS-CGHCHSCQLFE 76 Query: 84 QGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 +D + + +E R+L+ + P G KV +I ++L+ + NALLK Sbjct: 77 AQNHLDFHLLQNETNKSIGIEQVRNLIAKLNERPHLGDNKVVIIKNANLLTTAAANALLK 136 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP + +L T +L T+LSR HL + ++ L + + Sbjct: 137 TLEEPQGNSYLILLTRSHHQLMPTLLSRVQHTHLHTPEDTELFAWLA----LQGFNIQDI 192 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD-DQALSLVEAMVEA 259 L R + S LS A + V + L + + + E Sbjct: 193 GLL---RLYQNSPFALLSHLQSVRAETGDDERRECVEGLFYLLSHPETLFTFSVFLAEQ 248 >UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C3PJW1_CORA7 Length = 415 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 139/376 (36%), Gaps = 60/376 (15%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP-CGVCDNCREIEQGR-FVDLIEI 93 + H++LF+G G G++ A+ A L C + P CG C +C+ + + DL+ + Sbjct: 49 MSHSWLFTGPPGAGRSLAAQCFAAALMCTSADENGNPGCGRCPSCQSVLAKQAHTDLVYV 108 Query: 94 DAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 D + V + R+++ P+ ++V + ++ L + NALLKT+EEPPE Sbjct: 109 DPQEQFITVGEAREVIGRAASLPSVAPWRVVIFNKADRLRNEAANALLKTVEEPPERTVI 168 Query: 153 LLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 ++ DP+ VT+ SRC ++ A VE + QL E + + L + Sbjct: 169 IMVAPSEDPEDFSVTLRSRCRYLYIPAPSVEGVVKQL----VAEGTSEDDARLAAVTTLR 224 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAM------------- 256 + A L ++ A ++ + G+ +L++ + Sbjct: 225 H--VGRARHLVNEPAAQKRRAMAINLAEDVFHGSQAFQSVTALLKFIEKEAKDSHAAAEE 282 Query: 257 ---------------------VEANGERVMALINEA--------AARGIEWEALLVEMLG 287 + + + + + A G++ LV++ G Sbjct: 283 AERSKIEQSFGVGAKGKGATKAQRDARSALKDLEDLHKKRAKRRIADGLDIA--LVDLAG 340 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 + M++ A + ELA+ + + + R++LP ++ Sbjct: 341 IYRDALMLK-VGADVEMTHPDFAGLAGELAQRVSEDGLLAAQSAIRTCREQLPQNVTPQV 399 Query: 348 GVEMTL--LRALAFHP 361 + + LR Sbjct: 400 AFDGMVGRLRMACGAR 415 >UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK33_ENTBH Length = 298 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 126/290 (43%), Gaps = 34/290 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+L K+RP+T DV+G E ++ + N H LF G G GKT+++++L++ Sbjct: 3 QLLTEKYRPKTLDDVIGNEVIIKLIKN--LDNTFPH-LLFCGPPGTGKTTVSKILSQ--- 56 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 +F ++E++A+ ++ R+ + + K+ Sbjct: 57 ----------------------KFSKVLELNASDERGIDTIRNRIKTFTQLAEQS--KLV 92 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE L+ + AL + +E ++VKF+L K+ I SR + + + Sbjct: 93 IMDECDSLTLVAQQALRRLME--VKNVKFILICNMINKIIEPIQSRTAILKFEKIPINSF 150 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQAVSAML 241 H L +I N+E I P + L ++G R+ L++ +++ + + + ++ Sbjct: 151 LHLLTNICNKEKILLTPSGIDALIDLSQGDFRNCLNILQGICNVSNDNFNIDDNFLYSIN 210 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 G + Q L ++ ++ N E ++ + + ++ ++ + ++ Sbjct: 211 GIPNKKQLLKIINSIKNKNEEELIVNSEKLFSHKYDYSDIMNGLFKIIKD 260 >UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=Vibrionaceae RepID=D0IB97_VIBHO Length = 322 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 123/332 (37%), Gaps = 46/332 (13%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 Q++ ++GQ+ R+HHA L S G GK +A +LAK + C+ G+T P Sbjct: 14 QSWQQLLGQD-------------RLHHAILLSAPTGSGKIELAAMLAKTILCKNGVT-EP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG+C +C+ + D + + V+ R G +V LI Sbjct: 60 CGICHSCQLFDADTHPDFHWLKPEAEGKQLGVDAIRAGNQYAWETSQLGGQRVILIQNAD 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + + NALLKTLEEPP H F+L + + T++SRC ++ L E + + Sbjct: 120 RMGEAAANALLKTLEEPPSHCHFILLSQSMDTMLPTVVSRCNKWK-PKLPEESVVKR--- 175 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E E LQ+L R G+ A + + + V Sbjct: 176 --WVEGELFESVPLQVL-RINRGAPLAAKAFVENGSVARHKAV----------------V 216 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 +++ G + + + E L +L + +Q + Sbjct: 217 DGFASFVIQKQG--LFTVTEQVVKAQQEGLQWLSFLLL---DVVKIQQ-GSDEAIVHCDE 270 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 ++ LA ++P + + L + EL Sbjct: 271 MKTLQTLASSLPHSQVMAQLMGLNRMKAELAR 302 >UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothia mucilaginosa RepID=D2NPK2_9MICC Length = 380 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 72/370 (19%), Positives = 123/370 (33%), Gaps = 46/370 (12%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIE 83 L L + R HA+LF+G G A++ A L CE CG C C + Sbjct: 14 LQQLRTDAAADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDPQNRGCGQCKGCVTVM 73 Query: 84 QGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D A+ +++ R+L+ Q P GR++V L+++ + + N LLK Sbjct: 74 NGSHADFTHFSTEATHISIDEARELVMKAQDRPTVGRWRVILVEDTERMPERTSNVLLKA 133 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPP H +LL P + VTI SRC L Q+ L Sbjct: 134 IEEPPPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPTDAQVHEYLLA------HGVVDPL 187 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 AR A G ++ L A ++ T + + A + + + + + Sbjct: 188 AHRAARLALGDAQEGYRLATDERAMARRELITSLILNVRSISSAFNAAEKLTDLADQDAQ 247 Query: 263 RV----------------------------------MALINEAAARGIEWEALLVEMLG- 287 V + + A+ + + LL + Sbjct: 248 AVSALKDEQERQELLALLGIREGERVSPSLRAQVRRLEEQQKRRAKRVSSDTLLRSVAQV 307 Query: 288 --LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 +L V LS A + + + Q + + + L + Sbjct: 308 QTVLRDALTVALSAQAPL-VNEHLREPLEAFCTRRSAQQLLEDVQAVELTLRRLRTNANA 366 Query: 346 RMGVEMTLLR 355 R+ +E + R Sbjct: 367 RLALEALMSR 376 >UniRef50_B1IBA3 DNA polymerase III subunit delta n=36 Tax=Streptococcus RepID=B1IBA3_STRPI Length = 296 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 35/289 (12%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 W+P F V L +++HAYLFSG G +A+ LAK L C + Sbjct: 9 WQPAQFDRFV----------RILEQDQLNHAYLFSGFFGS--LEMAQFLAKSLFCTDKVG 56 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 PC C +C+ IEQ F D+ I ++ K E R+L+ A + +V++I++ Sbjct: 57 VLPCEKCRSCKLIEQEEFPDVTLIKPVNQVIKTERIRELVGQFSQAGIESQQQVFIIEQA 116 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + ++ N+LLK +EEP V T+D +K+ TI SR FH K + + Sbjct: 117 DKMHPNAANSLLKVIEEPQSEVYIFFLTSDEEKMLPTIRSRTQIFHFKKQEE-------K 169 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-----GDGQVSTQAVSAMLGT 243 IL E + + LLA+ ++ S +A L +QA + ++ Sbjct: 170 LILLLEQMGLVKKKATLLAKFSQ-SRAEAEKLANQASFWTLVDESERLLTWLVAKKKESY 228 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA-----LLVEMLG 287 L + +L + + + +V+ ++ G + +L ++L Sbjct: 229 LQVAKLANLADDKEKQD--QVLRILEVLC--GQDLLQVRVRVILQDLLE 273 >UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazoa RepID=RFC4_HUMAN Length = 363 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 132/344 (38%), Gaps = 34/344 (9%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELF 101 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------R 119 ++E++A+ ++ R+ + N G Sbjct: 102 RLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F K L Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVS 238 + + +L I +E++ + L + +EG LR A++ A +G +++ + ++ Sbjct: 204 DKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + G + ++ + A + +++ A++ + G L+ ++ H + + Sbjct: 264 DIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQL----HDVVVENNL 319 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + + + + +Q ++L Sbjct: 320 SDKQKSIITEKLAEVDKCLADGADEHLQ-LISLCATVMQQLSQN 362 >UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n=3 Tax=Rhodocyclaceae RepID=Q5P0G2_AZOSE Length = 353 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 126/348 (36%), Gaps = 49/348 (14%) Query: 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEI 93 R+ HA LF G G+GK +A LA L C T C C C+ G DL I Sbjct: 18 ERLPHALLFVGPAGLGKRDLADALAARLLCATPRPDGCACDRCTTCQLRRSGNHPDLFMI 77 Query: 94 DAA--------------------------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 A ++ +E RDL ++ + +V ++D Sbjct: 78 VPAADMEAGNGDESREGGERDIGSAKKKSTQIVIEQIRDLQQSLSVTGHQSGRRVIVVDP 137 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ ++ NALLK LEEPP F+L ++ P++L TI SRC Q+ + + L Sbjct: 138 AEAMNPYTANALLKLLEEPPAGCLFVLVSSAPRRLLPTIRSRCQQWSFSQPATDVVGQWL 197 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 E A LLA G A L Q G G + + V + D Sbjct: 198 G--------TQEAPAADLLA-LTGGMPLAAQRLAGQ----GAGALLARFVRDVAQLPATD 244 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 + E + EA A G L+ M + +A ++L Sbjct: 245 PLQ------LAGQWEAWLKS-KEALAAGFGIVQLVEWMQRWVTDLASLRLGG--RVRFFP 295 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 E +R LA+ + Y R+ + + R+ +E LLR Sbjct: 296 REEEVVRALAQRSNVAAVLNCYNEFARIRRVAQHPLNARLMLEDMLLR 343 >UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ES29_AMOA5 Length = 381 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 70/393 (17%), Positives = 128/393 (32%), Gaps = 68/393 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ + L + +I HA LF G G ++A A LNC+ + Sbjct: 2 MQFADIPTHLQLKKRLIYLATSEQIPHAQLFWGPPGSACITLALAFAAYLNCKNRLPEDS 61 Query: 73 CGVCDNCREIEQGRFVDLIEI------------------------------------DAA 96 CG+CD+CR+++ ++ I D + Sbjct: 62 CGICDSCRKMKNSTHPNVKFIFPINTTKLNSETEITSNNFLKLWYPFIKTQPYGDITDWS 121 Query: 97 SRTKVE---------DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 E + + + +K+ I + NA+LKTLE+PP Sbjct: 122 HHIGAEHKQLIIPRVEAKYISQYASMQSLESSYKIIFIWLPEYFHPTTANAMLKTLEDPP 181 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 H F L + P+KL TI SR Q ++ E I L + L + Sbjct: 182 PHTLFFLVSLAPEKLLGTIRSRLQQVYIPLFSDEVIAQLLAQ-----QYELSSQKLGEVV 236 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 R AEG+L A L ++ + ++ Q + + ++MA Sbjct: 237 RLAEGNLNKAYKLIEE----SNTELFEQC-------------KGWMRVCYAQDFAKLMAH 279 Query: 268 INEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 + + L +L ++ + +VQ S + +L +T+ ++ Sbjct: 280 AENFQGIQKENQKYFLNYILHMIRQALLVQFSHENVIRIHGEERQFAEKLGQTLDYDAVK 339 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + + ++ L+ Sbjct: 340 KINTWLNQSHYYIDRNLNPKILFLNLSLKIAQL 372 >UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Eukaryota RepID=A8Y3K6_CAEBR Length = 551 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 127/322 (39%), Gaps = 50/322 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E V+ L + + H LF G G GKT+ +LA Sbjct: 224 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTT--VLAAA 280 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVD-----LIEIDAASRTKVEDTRDLLDNVQYAPA 116 R++ ++E++A+ ++ R+ + V +A Sbjct: 281 ------------------RKMY---HPSKMSSMVLELNASDERGIDVVRNTI--VNFAQT 317 Query: 117 RG-------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 +G FK+ ++DE +++ + NAL + +E+ ++V+F + + Sbjct: 318 KGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASII 377 Query: 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 I SRC +F LD I +L+ I+ E + P + L R ++G +R ++ Q Sbjct: 378 PAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTL-Q 436 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALL 282 + A VS V +G + +V ++ + M I + G L Sbjct: 437 STAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLLNQTAKTCMNKIKKSLFENGY----AL 492 Query: 283 VEMLGLLHRIAMVQLSPAALGN 304 +++ LH +A P + + Sbjct: 493 QDVITHLHDLAFSMDIPDSAMS 514 >UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C8NXE7_9CORY Length = 439 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 88/412 (21%), Positives = 144/412 (34%), Gaps = 62/412 (15%) Query: 16 ADVVGQEHVLTALANGLSLGR---------IHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 + G V + + R + H++LF+G G G+++ A A L CE+ Sbjct: 19 ERLAGTPSVRETILGAAAAARGVPGADPHAMTHSWLFTGPPGAGRSTAAVAFAAALVCES 78 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRD-LLDNVQYAPARGRFKVYL 124 A CG C CR++ G D++ I ++ RD ++ P ++V + Sbjct: 79 PADALGCGHCQACRDVFAGAHTDVVHIVPEGMTISIDTVRDTIIPAATRLPTVANWRVII 138 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQ 182 I++ SR + A+LKT+EEPPE ++ TDPQ VT+ SRC ++ A V++ Sbjct: 139 IEDADRFSREAPEAILKTVEEPPETTVIIMCAPSTDPQDFSVTLRSRCRHLYVPAPSVDE 198 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT--------------------- 221 I IL E A EP A +L A + + A L Sbjct: 199 IV----RILVSEEGAAEPDA-RLAAVTSLRHIGRARRLVNSDASQKRRAAAINIAELVFH 253 Query: 222 -DQAIASGDGQVSTQA--VSAMLGTLDDDQALSLVEAM------------VEANGERVMA 266 DQA V + + D+++ L A+ + + Sbjct: 254 GDQAFQGVAALVKSADAEAKDAYASSDEEERKRLENALGMGAKGKGAAKALRGTASSLKE 313 Query: 267 LINEAAARG----IEWEAL-LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 L ARG + L LV++ G+ + + E E+A Sbjct: 314 LEAAQKARGTRRLRDVLDLTLVDLAGIYRDAMITSSGGG-VPLVHPDFEGLSTEIANHAD 372 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL--LRALAFHPRMPLPEPEVP 371 I + R L + L +R P P E+ Sbjct: 373 LAGITECLDAVAECRARLHQNVMPVIAFNGMLGRIRIACGVSSSPHPAAELQ 424 >UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D46 Length = 373 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 123/377 (32%), Gaps = 49/377 (12%) Query: 21 QEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 + L L+ GR HAYLF G G GK AR A L E Sbjct: 10 HPNARATLGAALAPGGRPSHAYLFHGPSGSGKRVAARAFASALLAEGSADPD-----SAR 64 Query: 80 REIEQGRFVDLIEIDAASRTK--VEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +E G DL + + + V D + ++ P +V++I+ L + Sbjct: 65 TRVEHGTHPDLTWVTPSGAHEMLVGDIEEPVVAAAAMTPFESARRVFVIERADTLIDQAA 124 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N +LKTLEEP V +L T ++ TI SRC AL EQ+ ++ Sbjct: 125 NKMLKTLEEPAPFVHLVLLTDRLAEVLPTIRSRCQLVRFDALTDEQLAERVGR------H 178 Query: 197 AHEPRALQLLARAAEGSLRDALSLT--DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 P + +AR A G AL L D G+ +A A+ G + + + + Sbjct: 179 GVAPEQARAVARLALGDGARALELALGDGPALRAGGERFARA--ALAGEVGGSRPWTELL 236 Query: 255 AMVEANGERVMALINEAAARGIE-----------------------------WEALLVEM 285 A+ GE +A + A +E + L Sbjct: 237 AVKRRRGEEAVAELEAKLADELEVVSRRERKRLENEYAERIRRTRRRVETGALDLGLQLS 296 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L A V + + A P ++ + + R+ L Sbjct: 297 SLWLRDAACV-AWGTPELVHHTDRTDVLAQDADGRDPQRLRAGVELIEETRRRLRSNVTE 355 Query: 346 RMGVEMTLLRALAFHPR 362 + +E R A + Sbjct: 356 ELALEALAYRLEALLSQ 372 >UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Rickettsiella grylli RepID=A8PMJ4_9COXI Length = 324 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 117/318 (36%), Gaps = 38/318 (11%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L GR+ HA LF+G G+GK+ A AK L C+ + C C +C + G Sbjct: 16 QQLYRSHQEGRLSHALLFAGQMGLGKSLFALHFAKTLLCKQPKQSRACQACRDCILVAAG 75 Query: 86 RFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL + K++ RD+ D + + ++ +K+ +I+ L + ALLK+ Sbjct: 76 THPDLSLLTTEKSTQGIKIDQIRDITDKLNHT-SQATYKIIVINPADSLLVAASQALLKS 134 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP F+L T + L TI SRC L A Sbjct: 135 LEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFNPPKKSLAMAWLAQ-------QLPASA 187 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L L + G+ A+ ++ LV ++ + Sbjct: 188 LDTLYHLSSGAPLLAVRYAEEGYPL--------------------FYADLVHSLAQL-VN 226 Query: 263 RVMALINEAAAR-GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + I AA + + LL +L LL+ + Q L A + LAR + Sbjct: 227 QTLNPIRCAAKYLKTDIQQLLSALLNLLNELLKCQ-----LLRGYTATIDSIAHLARVLS 281 Query: 322 PTDIQLYYQTLLIGRKEL 339 + YY ++I R + Sbjct: 282 TDFLLQYYDRIMILRARM 299 >UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM Length = 323 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 115/328 (35%), Gaps = 31/328 (9%) Query: 29 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 ++ GR+HHA + G+GK S A+ LA+ L C+ I PC C C+ E Sbjct: 14 QTQMTAGRLHHALFITSASGMGKLSYAQTLAQTLLCKEPIGWEPCHRCHPCQLFETSVHP 73 Query: 89 DLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 D + + V+ R + + G KV +I+ + S NALLKTLEEP Sbjct: 74 DYYLVSTEPGKVIGVDRIRHISQKLNEHSQLGGNKVVIIEHAESFNLASANALLKTLEEP 133 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 +L + ++ TI SRC + HL A ++ L ++ E L + Sbjct: 134 SNGSYLILLAENKSQVLPTIYSRCQKLHLPAPAEQESMAWL-----QQQFPIESPTLTAI 188 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 R G+ LS + ++ + L T L E + + E++ Sbjct: 189 -RINHGAPLHTLSYLNNGDDDLRKEIFSNIT---LLTTQPAAITRLCEIISDRTLEKL-- 242 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 W + L + V+ + + + + I Sbjct: 243 ----------SWLQFI------LLDLQKVKRGVSIDYIVNTDQLEWLTHFSTQLSQDKIT 286 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLL 354 L R+ L + + E +L Sbjct: 287 QLQSELTALRQLLMQNNN--LTAETLVL 312 >UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=1 Tax=Brugia malayi RepID=A8P0Z2_BRUMA Length = 315 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 34/285 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V Q V++ L L + + LF G G GKTS A L Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPN-LLFYGPPGTGKTSAAIAL----- 74 Query: 64 CETGITATPCGVCDNCREIEQGRFVD---LIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 CR++ + ++E++A+ + R+ + Sbjct: 75 ---------------CRQLFRNTDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSSHL 119 Query: 121 ---------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 KV ++DE ++ + AL +T+E +F L ++ + SRC Sbjct: 120 PDGSPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCA 179 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 +F K++ E +L+ I E+I +P A+ L +G +R +++ Q I+S + Sbjct: 180 KFRFKSISSESQEKRLKWICQNENIEFDPLAISELIELCDGDMRKSVTAL-QTISSCHKK 238 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 + V LG + DD V + N ++ A I G Sbjct: 239 LIPADVRQFLGAVPDDVVQQFVASCRSRNHNQLYACIENIRREGY 283 >UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuniibacter caesariensis RepID=Q2BG76_9GAMM Length = 295 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 15/216 (6%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 R+ HA L G +G+GK A+ A+ L C+ + CGVC +C G DL Sbjct: 23 RQKRLPHALLIHGMQGIGKALFAKSFAQMLLCQQPESGKACGVCKSCELNAAGSHPDLFI 82 Query: 93 I---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + +A + KV+ R L + + +G ++V +ID ++ S NALLK LEEP Sbjct: 83 LQPEEAGKQLKVDQVRALGEFIYSTAQQGGYRVVVIDPADSMNIASANALLKMLEEPGSD 142 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 LL T+ ++ TI SRC D E L E + + + Sbjct: 143 TLLLLVTSKMGQVLPTIKSRCQHIECVTPDTEVAISWLM----SEG-DLDEERARGVLTI 197 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 G+ ++AL A + + + G D Sbjct: 198 NRGAPKEAL-------AYLNNNLGEDRAQLIRGLAD 226 >UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root RepID=RFCS_METBF Length = 334 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 134/349 (38%), Gaps = 41/349 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP V GQE + L + ++ + H LFSG GVGKT+ A +A+ + E Sbjct: 14 KYRPVRLDQVAGQEETIERLKSYVATKNLPH-LLFSGPPGVGKTASAVSIAREIFGEDLW 72 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARG-RFKVYLID 126 + E++A+ ++ R + + + AP G FK+ +D Sbjct: 73 RE------------------NFTELNASDERGIDVVRTKIKNFAKTAPMGGAEFKIIFLD 114 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 E L+ + +AL +T+E + +F+L+ ++ I SRC F + L E IR + Sbjct: 115 EADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKR 174 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLGTLD 245 LE+I ++ ++ + L ++G +R A++ A + +S + T + Sbjct: 175 LEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATAN 234 Query: 246 DDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + +L+E + N +N G+ E ++ + + + Sbjct: 235 PEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQ---------IYRAISEMDNR 285 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + I + L ++ +E L Sbjct: 286 MILDLG---------LSEKRIVELVDIIGEIDFRLTEGATEKIQLEALL 325 >UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevotella RepID=C5VJN5_9BACT Length = 379 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 128/386 (33%), Gaps = 70/386 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE V L + R+ HA LF G +G GK ++A A L Sbjct: 1 MNFSEVIGQEAVKERLIQMVKEDRLPHALLFCGPQGAGKMALAMAFASYLLAGDEAEEAT 60 Query: 73 CGVCDNCREIEQG-RFVDLI-------------EIDAASR-------------------- 98 N R + + DL E S Sbjct: 61 SSTVSNARAMLRNWEHPDLHFSYPTIKLPSMSGEHQPVSADFAKEWHGLIMQGTYFTMNQ 120 Query: 99 --------------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 T E +L + ++G +KV +I ++ S N LLK LE Sbjct: 121 WMNQMGATTQQAIITGAESD-ELSRVLALKSSQGGYKVSIIWLPERMNLTSANKLLKLLE 179 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP+ FL+ +P+KL TI+SR + +K ++ E I L + + A Sbjct: 180 EPPQGTIFLMVCEEPEKLLETIISRTQRIDVKRINDEAIEQALIN-----KRGIDTDAAH 234 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 +AR A GS AL +A+ +G+ + M L+ N + + Sbjct: 235 RIARIANGSWLKAL----EAMDTGNENREFHNMFQM-----------LMRLCYLRNVKDL 279 Query: 265 MALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 A G E +L + M L E + AR I Sbjct: 280 KRWSEVVAGYGREKERRMLTYFQQQVRENFMFNFQTPELNYMTLEEENFAKNFARFINEA 339 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ + +++ + ++ Sbjct: 340 NVIEINELFQRANRDIGQNANAKIVF 365 >UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI000197631E Length = 394 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 69/395 (17%), Positives = 135/395 (34%), Gaps = 60/395 (15%) Query: 15 FADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ V+ L +S + ++L G G G++++AR A L E+ Sbjct: 4 WDSIVGQQAVVGQLQAIVSGDPKALAQSWLICGPPGSGRSNVARAFAAAL--ESPDRGLS 61 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 + R++ G D+ + A+ ++D R L+ + P+ +++ +I++V Sbjct: 62 DEPTNITRQVLSGTHPDVTTL--ATNKVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVD 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + + N LLK +EEP H +LL Q + TI SR +L + + L Sbjct: 120 RMLERTTNVLLKEIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTKAVADYLMA 179 Query: 190 ----ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L E + AR AEG + A D + + +LG Sbjct: 180 SVNPALPAER-QFDRHVAVRAARLAEGHIGIAKLYASDTQVMSDRD---ELIVGLLGLRK 235 Query: 246 DDQALSLVEAMVE-----------ANGERVMALINEAAARGIE----------------- 277 A+ L + +++ A G + Sbjct: 236 ASDAVLLADDLIDTAKSQAEADVNRQTAAAEADFRRINGLGEQDRIPPKLRGAYNAIAKK 295 Query: 278 --------------WEALLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRELARTIPP 322 + L + IA++Q + A+G + EL+ + Sbjct: 296 DEIKRRATRRSRDVLDRALNSAASIYRDIAVLQNNAEDAVGLINMENRTAIAELSARLSR 355 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ + + + RK L + + E + Sbjct: 356 QEVVDRLEAITVARKRLLGNGNPMLVFEALFCALI 390 >UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0EV71_ENTDI Length = 315 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 133/321 (41%), Gaps = 37/321 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +++G ++ L + + H L G G+GKT+ LA L Sbjct: 7 IPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPH-LLLCGQPGIGKTTSIHCLAHELL 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----PARGR 119 + A ++E++A+ +E R + + P Sbjct: 66 KDRYKEA-------------------VLELNASDERGIETIRSTIKSFCEKKLVLPDNLP 106 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ ++DE ++ +F AL +T+E + +F+LA P+K+ I SRC + + L Sbjct: 107 -KIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLG 165 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E++ ++++ I E++ E A++ L +EG +R A++ Q A G+++ + V Sbjct: 166 EEELMNRIKEIARCENVDIEDDAVKALEIVSEGDMRKAINAL-QTCAIIQGRITKEQVYQ 224 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 D + ++ ++ + + + I + G + ++ ++ + Sbjct: 225 RNDLPSADNIIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDIMDMIVRMF---------- 274 Query: 300 AALGNDMAAIELRMRELARTI 320 + + I +R+ E+A Sbjct: 275 -SKIDASEEIRVRLYEIAAPF 294 >UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax=Acinetobacter RepID=Q6F9X3_ACIAD Length = 331 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 124/345 (35%), Gaps = 39/345 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE+V T L + H LF G +G GK + + + C CG C +C+ Sbjct: 15 QENVWTTLTRRFPQ--VGHGLLFYGKKGCGKDAFTQHFLAWVLCTHKKPEGACGECVSCQ 72 Query: 81 EIEQGRFVDLIEI----DAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 ++ + + I D + K+E R+LL VQ ++V +I+ L+ Sbjct: 73 WLKSDTHPNYVHITTDEDNKKQNAKIKIEKIRELLPFVQ--QTVDGWRVIVIEPAEALNI 130 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 S NALLKTLEEP E + +L KLP TI SR F L + Q L+ L+ Sbjct: 131 ASSNALLKTLEEPGERILIVLLADHYLKLPATIRSRLQHFSLDRVSTVQAHDYLQQHLDN 190 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 QLL +A+ + + + + + Sbjct: 191 ----LPSEQAQLLLNLTNNMPLEAIEVAKSDWFAKR----------------EAFLMDWI 230 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + N + + E + E L L + L L +L + Sbjct: 231 KLVHQKNMPL-------FYSSKWQKELVFSEWLTLF-EYLLCDLICVKLDQVCKNTDLDL 282 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++LA + +Y L ++ + + ++ ++ + Sbjct: 283 KDLASNYTLEVLFDFYADLQHAKQLIEQNVQSNLVMDQLFIKLMN 327 >UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosomonadaceae RepID=Q2Y982_NITMU Length = 368 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 140/389 (35%), Gaps = 91/389 (23%) Query: 16 ADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPC 73 +++ G QE V L + HA L G +G+GK + AR LAK CE + C Sbjct: 2 SNIYGWQEEVWRKLTGA-----LGHALLLRGRKGLGKLAFARYLAKSRLCENRSVEGKAC 56 Query: 74 GVCDNCREIEQGRFVD--LIEIDAA----------------------------------- 96 VC +C EQG D L+E +AA Sbjct: 57 EVCASCHWFEQGNHPDFCLVEPEAATATSVSGEGAGEEGVETGDEAEVQSLPRAVNQLSG 116 Query: 97 ---------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + + R+L D V + +K+ LI +S + +ALLK LEEPP Sbjct: 117 SGKSTKKPSRQISISQIRELGDFVNITSHQNGYKIILIHPAETMSTAAASALLKNLEEPP 176 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 F+L T Q L TI SRC Q + A D L+ ++ + R L Sbjct: 177 LQTLFILITHQAQYLLPTIRSRCRQIIMPAPDAASAALWLK----QQGVKAPERCLA--- 229 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS---LVEAMVEANGERV 264 ++G ++ L ++D + ++ + +G V Sbjct: 230 ------------------SAGYAPLTA------LEFANEDYLVRHSAFIQQISTPSGFDV 265 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 +A E + + ++ + + + +++ + +++ LA + P Sbjct: 266 LARAEEM--QKSDLVMVVSWLQKWCYDLMSFRMA--QKVRYHPDMLAQIKPLASGLDPYS 321 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + Y + L ++ + + R+ +E L Sbjct: 322 MATYLRALDKTQQLARHPLNPRLFLEELL 350 >UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42945 Length = 317 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 126/340 (37%), Gaps = 36/340 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + L N L G + HAYL G + + K L C C C C+ Sbjct: 7 QPVAVQTLLNSLQRGTLSHAYLLQGANLEEQMRVVLFFLKKLLC----GKEACEGCKVCK 62 Query: 81 EIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 +I DLI + DAA+ K+E R+L + Y FK+ +I++ L+ + NA Sbjct: 63 QISNMHHPDLICVKTDAAT-LKIEQVRELQKALSYCNVESDFKMVVIEKADTLTIQAQNA 121 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK++EEP + F L ++ + T+ SRC LK + EE+I Sbjct: 122 LLKSIEEPEQQTIFFLLSSSSNNMLPTVRSRCQLLTLKPVGRS----------GEENI-- 169 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 R +G A + + G S + + + + L+E M+ Sbjct: 170 ---------RLTQGEYSLATAYLYEHYYKGLEAASHEYIHNTV-----QHLIVLIEGMLS 215 Query: 259 ANGERVMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + E ++ + E A L M LL + Q+ + + + Sbjct: 216 SQVEGLIHVSKAQGLWPSKSEQIAALSTMQALLQEVM-YQVLGLQSLCRLYKDYPSIETI 274 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AR I+ + ++ + +M +E +LR Sbjct: 275 ARENELPVIKKAMIGVEEAQRMMRSNTTGQMALEYAVLRL 314 >UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8S3_ALHEH Length = 337 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 131/336 (38%), Gaps = 34/336 (10%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCR 80 + + L + G++ HA L +G G GK+ + L + L C G CG C++CR Sbjct: 27 DRLSELLRQA-ASGQLPHALLLAGPAGTGKSLLGGHLVRALLCHQPGEGGRACGRCESCR 85 Query: 81 EIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + +G D + R V+ R L + + G +++ LID L+ ++ N+ Sbjct: 86 ALARGLHPDFRHLAPEERAVITVDAVRALGRFLNLSARFGGWRIALIDPADTLTVNAANS 145 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP +L ++ P +LP TI SRC + E+ L + + Sbjct: 146 LLKTLEEPPATTLLVLVSSRPAQLPATIRSRCRHLTIPVPPAERALSGLRG----QGLTV 201 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 R L L A G+ L+ + + +++ ++ G D Sbjct: 202 TERTLAL----AGGAPFRGLAWEEAGLPERLDRLAADLLALHQGRQDP------------ 245 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 +AL + A ++ L + LL +A Q A A LR Sbjct: 246 ------IALARDWAD--LDLPVFLDVLATLLAELARFQAGGAEASRAAPAAPLRALA--A 295 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 PT + + + + + + + ++ E L+ Sbjct: 296 ETTPTAVLGHLEAVHEAQYRQGHPLNPQLVRESLLV 331 >UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sphingobacteriaceae RepID=C6XXP7_PEDHD Length = 382 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 136/397 (34%), Gaps = 75/397 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ GQE+V L ++ RI HA LF G G +A A+ +NC Sbjct: 1 MQFKEITGQENVKQQLLQTVAENRISHAQLFLSCDGSGALPLAIAYAQYINCLDKQENDS 60 Query: 73 CGVCDNCREIEQGRFVDLIE-------------------------------ID------- 94 CG+C +CR+ E+ DL ID Sbjct: 61 CGLCSSCRKYERYIHPDLHFSYPFFASKDVKTAVDVLEEWRSMLLADAYFDIDIWRSKLN 120 Query: 95 ---AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 + + + D++ + Y KV ++ L + NALLK +EEPP++ Sbjct: 121 AENKQANINIAECHDIIKKLSYKAFEAHTKVLIMWLPEYLDKEG-NALLKIIEEPPQNTL 179 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 F+L + +++ T+LSR + L + + L E + A+ Sbjct: 180 FILVANNQEQILSTLLSRTQIVKIPKLSHATVENYLM-----EAHGLPENQATEYSFLAD 234 Query: 212 GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI--- 268 G+L +A SL + +D A + + G RV+ L Sbjct: 235 GNLIEAKSLVAN--------------------IHNDNADKFADWLRMGYGNRVLDLAAFT 274 Query: 269 NEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTDIQ 326 +AA G E + L + L +++ L + + ++LA + Sbjct: 275 EQAAGWGRENQKNFLKYGISFLRECSLLLTGADDLVKLPSRVLETAKKLATHVLDLNMAD 334 Query: 327 LYYQTLLIGRKELPYAPDRRMGV---EMTLLRALAFH 360 L + + ++ + L++ + F Sbjct: 335 AIISELEQAHYHIERNANPKILFLDVSLQLVKIIKFK 371 >UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FDAF Length = 385 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 83/379 (21%), Positives = 139/379 (36%), Gaps = 51/379 (13%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++VGQ+ V+T L + L G + HA+LF+G G G+++ AR A L +G Sbjct: 4 FNELVGQDDVITQLKHALYSPGAMTHAWLFTGPPGSGRSNAARAFAAAL--ISGGEEQG- 60 Query: 74 GVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 D + +G L + S +++ R+L+ Q AP ++V +I++ +S Sbjct: 61 ---DVTARVLKGHHESLTIMSTQKSVIAIDEVRELVTRAQSAPVNSPWRVVIIEDADRMS 117 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + N LLK +EEPP +LL P + TI SRC L+ + + L Sbjct: 118 ERTANVLLKAIEEPPPATVWLLCAPSPIDVLTTIRSRCRPVRLRIPSRDAVAQLLI---- 173 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLT---------DQAIASGDGQVSTQAVSAMLGT 243 E +P + A A+ + A + Q +A S A + G Sbjct: 174 -ERDHVDPDRAKWAAAVAQNHIGRAKYMALNESADEERRQILAIPGKLTSVGATIRLAGR 232 Query: 244 LDDDQALSLVEAMVEANGER-------------------VMALINEAAARGI-------- 276 + D+ A + + E N + I + Sbjct: 233 IVDEAAETAKSRVEERNASERSDLMATLGIESEKSIPPSARSQIRKLEEEQKRRSVRARN 292 Query: 277 -EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 E + + +E++ L I M QL G A + E A P L + Sbjct: 293 DELDRIFLELMSLYRDILMYQL-GIREGWINAGEVDLISEQANRDGPDTTLLRIDAITEA 351 Query: 336 RKELPYAPDRRMGVEMTLL 354 R+ L + VE + Sbjct: 352 RRRLQTNMSPVLIVESAFV 370 >UniRef50_B8FY25 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8FY25_DESHD Length = 282 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 11/221 (4%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 L + GR+ H LF G G + +A+ +NC +G A PCG C +C++ Sbjct: 2 NIALHLIEKAAQEGRLAHLLLFHGGSGPERRKAGLEIARRINCTSGQDA-PCGHCPSCKK 60 Query: 82 IEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 I G D+ + A +E D + V G +KV++++E L+ + NALL Sbjct: 61 ILSGNHPDVEVVKPAKASIGIEQILDWQERVYRKHYEGNYKVFILEEADKLTIPAANALL 120 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K +EEPPE +L+ + + L TI SR + E+ LE + +P Sbjct: 121 KVIEEPPERTLIVLSAQNAEVLLPTIQSRAQAVYFPFRGEEEWLKSLEE-------SLDP 173 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVS--TQAVSA 239 + R + + A + + + QAV Sbjct: 174 WEAREAFRLSSHNPELAYEILTLGVEKVKEWIRGFEQAVEE 214 >UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrogenothermaceae RepID=B2V7X1_SULSY Length = 312 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 24/259 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G E T + L + L+ G +GK +A A+G CE CGVC+ Sbjct: 3 VIGHEKEKTLIKKYLHKNYDSLSLLYEGKDCIGKKLLALYTARGFLCEKKE-GFGCGVCN 61 Query: 78 NCREIEQGR-----------FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLI 125 +C+ + +++ I + +R K++ R+ + + ++G KV +I Sbjct: 62 DCKLVNNLISNVYENTNLTPHPNIMLIQSDNREIKIDQIREAISFLSLKSSKG--KVLII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ L+ S NALLKTLEEPP + +L T++ +L TI+SR + + L + + Sbjct: 120 EKAENLNTESANALLKTLEEPPSNTLIILTTSNQNQLLPTIVSRLKKIRFRKLSHQDVVD 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L L++E ++ LA ++GSL A +L + + V ++ Sbjct: 180 ILSLKLSDEK------KIKELADISDGSLCIASTLLKKEEIYVWAK---DFVGILINKKH 230 Query: 246 DDQALSLVEAMVEANGERV 264 + S+ + + + E V Sbjct: 231 PEGIFSIAAKIDKMDIEDV 249 >UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBH1_KANKD Length = 332 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 32/314 (10%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 G + HA L G G+G+ + A+ LA+ L C CG C +C E G D Sbjct: 19 FQQGSLPHAILLMGPEGIGRENFAQSLAEWLLCLNRQD-EACGECKSCFLFEAGHHPDYH 77 Query: 92 EID---AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 +D ++ V R+L+ +Q + +G +KV I V ++ SFNALLKTLEEP + Sbjct: 78 LLDIEQDKTQISVGQVRELITAMQESSHQGGWKVANITNVQAMNASSFNALLKTLEEPQD 137 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 + +L T+ Q +P+TI SR L E+++ L E Sbjct: 138 NTLLILQTSQLQGVPLTIRSRAQLLSLSVDGSEEVKAWL----------IER-------- 179 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMAL 267 +G++ AL + V+ L + + + + + + + Sbjct: 180 --QGNMTQALEAAINLFPQAPYKAEDFGVNGDTLKYA--EFIVQINDLVAGKGSP--IEM 233 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + + M + I ++Q + + + LA+ I L Sbjct: 234 AQFWHEELADAVFWMQLM---VRDILLLQQANKEADLLFMQQKQELEGLAKAINGQGWLL 290 Query: 328 YYQTLLIGRKELPY 341 + + ++ + Sbjct: 291 LLEKINELQRLIKQ 304 >UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alteromonas macleodii RepID=B4S1N1_ALTMD Length = 295 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 25/253 (9%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 ++HH L +G G+GK +A L+ L C+ PC C +C + G D + Sbjct: 20 AKKLHHGLLLTGVSGIGKNQLALGLSNTLLCKHPSVDGPCEQCQSCHLRQAGNHPDFHIL 79 Query: 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 ++ + V+ R+ + + G KV LI + ++ + NALLKTLEEP + L Sbjct: 80 ESEKQLGVDKIREGIAKLSGTAQMGGNKVLLIPKADTMTEAAANALLKTLEEPTNNTFLL 139 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 L T KL TILSRC + L V + + L+ E + LLA Sbjct: 140 LITDSVNKLMPTILSRCERQVLSLPSVSESLNYLKA------KGVEDASDALLA------ 187 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE-RVMALINEAA 272 A G + + + L ++A++ + + L N+ Sbjct: 188 ------------AYGYAPLRVEEALSGDDDLSYRHFSDGMQALLAGDANVQAQTLANKWQ 235 Query: 273 ARGIEWEALLVEM 285 + ++ Sbjct: 236 DNAQQIALWCQQL 248 >UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bifidobacterium RepID=B3DUA0_BIFLD Length = 383 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 137/390 (35%), Gaps = 58/390 (14%) Query: 15 FADVVGQEHVLTALANGLSLG---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 + +VGQ+ V+ L+ ++ G +I ++L G G G++++AR A L E+ Sbjct: 4 WDSLVGQKPVIDMLSR-IAQGDPSQITQSWLICGPPGSGRSNMARAFAAAL--ESPDHGM 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 +++ G D+ + ++ R+++ + PA +++ +I++V Sbjct: 61 SAEPTRVTQQVLAGTHPDVTVLTTNKVTIGIDQVREIITTSEQMPATAPWRIIIIEDVDR 120 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 + + N LLK +EEP EH +LL Q + TI SR +L + + L Sbjct: 121 MLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAGFLTST 180 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 N EP+ Q AR AEG + A D + V +L A+ Sbjct: 181 TN-----VEPKVAQRAARLAEGHIGIAKLYATDERVMSDRD---ELVVGVLNLARASDAV 232 Query: 251 SLVEAMVEANGERVMALINEA------------------------------AARGIEWEA 280 L +++ + A N A+ + + Sbjct: 233 LLAGNLIDNAKAQAEADANRITAGQEAEFRRINGLAPSDRIPPKLRGAFNQIAKKDDVKR 292 Query: 281 L------------LVEMLGLLHRIAMVQL-SPAALGNDMAAIELRMRELARTIPPTDIQL 327 L L + + +A++Q + ++G + EL+ + Sbjct: 293 LVTRRTRDVLDRALNSIASIYRDVAVLQNNAEDSVGLINLENRSSITELSVRLNRAGAVT 352 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + RK L + + E + Sbjct: 353 RLDEVAHARKRLAGNGNPLLVFESLFCTLI 382 >UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VXK9_MARMS Length = 312 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 126/338 (37%), Gaps = 60/338 (17%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L + HA L +G GVG+ +A + K L CE A CG C +C+ + Sbjct: 15 VQVLK---QTNSLSHALLITGADGVGQEELAHEMVKNLMCEKNQAA-ACGTCHSCQLMSA 70 Query: 85 GRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D +D AS KV+ R L+ + P G+ KV LI ++ ++ NA+LK L Sbjct: 71 DTHPDFRVLDGEASTIKVDQVRLLVRQISQKPQVGQNKVVLITHAQAMNINAANAVLKAL 130 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEP + F+L ++ L TI SRCL ++ + +++ L + +AL Sbjct: 131 EEPADRTFFVLTSSQSSSLMPTIRSRCLLVNVPTPSMNEVKSWLMQ-------QPDGKAL 183 Query: 204 -----------QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 +LLA +G + L DQ + G VS AV L Sbjct: 184 GALFWLTTQPFRLLAIQQQGKTQLYAGLPDQLTSMLRGTVSVSAVLKGL----------- 232 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 E + +LH+ + + A + + I Sbjct: 233 ---------------------DSNNIEDYCNGLAAILHQC-ICHSTGAPIDEALQTIYDT 270 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKEL-PYAPDRRMGV 349 + + + L YQ+L + +L + M + Sbjct: 271 LIA---RLGIQTLMLRYQSLQKLKSDLQKTNLNPIMQL 305 >UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3 Tax=Toxoplasma gondii RepID=B6KMJ0_TOXGO Length = 357 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 122/317 (38%), Gaps = 38/317 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ D+ Q L L G + H LF G G GKTS A L + L Sbjct: 36 KYRPRRVEDMAHQVEPKKMLRRILETGNMPH-LLFYGPPGTGKTSAALALVRELFGREEA 94 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD--------NVQYAPARGR- 119 L+E++A+ ++ R+ + + P GR Sbjct: 95 KNR------------------LLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGRE 136 Query: 120 ---FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 +K+ ++DE M+++ + +AL + +E +F++ ++ I SRC + Sbjct: 137 MPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFE 196 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + ++ HI + E + A+ L R ++G LR A++L A + D + A Sbjct: 197 PVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDNLHEDA 256 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG------LLH 290 + + G + A + + + ++ ++G + LL EM+ L Sbjct: 257 ILEVAGQPPARIVTDFLRACQAS-PSQASSEVDNVISQGWDVCLLLQEMIRQVVVSPHLK 315 Query: 291 RIAMVQLSPAALGNDMA 307 + ++ + A Sbjct: 316 DLQKARVINDIAQKEFA 332 >UniRef50_B2S5K7 Replication factor C conserved domain protein n=38 Tax=Proteobacteria RepID=B2S5K7_BRUA1 Length = 360 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 30/298 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITA-T 71 + G + + LA GR+HHA LF G +G+GK ++A LA + E T Sbjct: 26 LAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEAPETLIA 85 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKV 122 P R+I G ++ I + VE+ R + + + +++ Sbjct: 86 PDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTASDHAWRI 145 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++R++ NALLKTLEEPP F+L + +L TI SRC K LD E Sbjct: 146 VIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFKPLDGET 205 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL-----------SLTDQAIASGDGQ 231 + L H ++ I+ LL + +EGS+R AL DQ IA Sbjct: 206 LGRALSHAGSKAGISAGDITEVLL-QRSEGSVRKALLLLAHGGLEISDTVDQIIAGSIFD 264 Query: 232 V-STQAVSAMLGTLDDDQALSLV-EAMVEANGERVMALINEAAARGIE-WEALLVEML 286 + QA+ +L + + L + ++ + R + W +++ Sbjct: 265 LPKAQALGGILNGREAEVQYELFRDYLMGRIAAEARRYADSGQLREADQWARFWSDLI 322 >UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU66_TERTT Length = 339 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 126/348 (36%), Gaps = 48/348 (13%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + GQ ++ G + HA L G G+G S+AR +A+ L C + + CG Sbjct: 15 WHQFAGQ----------VTQGHLPHAILLQGVAGIGTESLARAMAEFLMCSSPVEQAACG 64 Query: 75 VCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C CR ++ DL + + KV+ R L + V +G K+ +I+ + Sbjct: 65 QCKVCRLLQSHNHPDLFLLSPEEKSVVIKVDQVRQLTEFVAKTSQQGGRKLVIIEPAEAM 124 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLK EEP F+L +L TI SRC L + + + Sbjct: 125 NIAAANALLKCFEEPSGDTVFILVCHHANRLLPTIRSRCACHTL-PVPERALA-----VS 178 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQ--AIASGDGQVSTQAVSAMLGTLDDDQA 249 E + E AL L D+ Q S V D+A Sbjct: 179 WLETMGVESAAL----------------LLDETHGAPLTAHQWSRDDV-----IASQDKA 217 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L+ A ++ ++ + + A L ++ L ++ + + A Sbjct: 218 CELLVAALQ--TQKPVTTVAGTLAGECSGLELAELLINWLEQLIRERTRGSRRSLL--AH 273 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP--DRRMGVEMTLLR 355 + +A+ + ++ + + +L P + M +E LL Sbjct: 274 WEPLVGVAQALSTVELFKLREVYCQRKAQLLANPNLNANMVIEDLLLE 321 >UniRef50_Q2QTM2 Expressed protein n=7 Tax=Poaceae RepID=Q2QTM2_ORYSJ Length = 544 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 95/202 (47%), Gaps = 4/202 (1%) Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 + T+D LP T ++ C +FH + V I ++LE I EE + + L ++ + GS Sbjct: 1 MITSDIDSLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGS 60 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 LRDA + DQ ++ +++ V ++G++ DD+ + L++ + ++ + E A Sbjct: 61 LRDAEIMLDQ-LSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMA 119 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 I+ L+ ++ L+ I + +A+ + R LA + ++ + L Sbjct: 120 SAIDPLQLVSQLANLIMDILSGRC-QSAVTEVSKSFLGRY-ALAE-VGIKKLRHALKILS 176 Query: 334 IGRKELPYAPDRRMGVEMTLLR 355 K+L + ++ V + LL+ Sbjct: 177 ETEKQLRTSRNQATWVTVALLQ 198 >UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepID=RFC4_CAEEL Length = 334 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 30/278 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+T D+ Q+ V+T L L + H LF G G GKTS A Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPH-LLFYGPPGTGKTSAALAF------- 68 Query: 66 TGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 CR++ +++++A+ + R + + + Sbjct: 69 -------------CRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED 115 Query: 121 ----KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K+ ++DEV ++R + A+ + +E+ + +F+L +L ++SRC +F K Sbjct: 116 VLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFK 175 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +L E +L I + E L+ + +EG LR A+ Sbjct: 176 SLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNAR 235 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 + G+ D ++ ++++ A+ +++AL + Sbjct: 236 NCYLRGSSDSLLISNVCKSILTADVPQIIALTKDITKS 273 >UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMM6_9GAMM Length = 357 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 118/338 (34%), Gaps = 56/338 (16%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVD-- 89 GR+ HA G+ G+GK+ +A A+ L C + CG C C G D Sbjct: 24 RRGRVPHAIAVVGSAGLGKSRLAIRFAQALLCASPRSDGDGCGRCRCCHLQAAGSHPDHY 83 Query: 90 -LI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + E + K++ R L++ + + G ++V L+D ++ + N+LLKTLEEPP Sbjct: 84 AVHPESEPGGPIKIDQIRRLIEFLMRSSQYGGYRVTLVDPADRMTLAAANSLLKTLEEPP 143 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 +L +LP T+ SRC L+ R L P A+ LLA Sbjct: 144 AAAVLILVARQFSQLPATLRSRCRLVQLQPPPAVLAREWLAEHC--------PEAIGLLA 195 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 A G+ A++ +A E ++A Sbjct: 196 -LAGGAPLRAMA--------------------------------YAQAGTEGRYAALIAD 222 Query: 268 INEAAARGIEWEALLVEMLGL-LHRIA---------MVQLSPAALGNDMAAIELRMRELA 317 + G+ L + + + D ++ L Sbjct: 223 LLAIVEGHRSPVLAAQNWTGIGLRDWIELLQLALAELARAAFTECELDRIPGRADLQTLT 282 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I + + Y + ++ R+ L + ++ +E +R Sbjct: 283 ERIDHSCLHDYMEEVVATRRILDQPLNEQLVIEDLFIR 320 >UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=Caenorhabditis elegans RepID=RFC5_CAEEL Length = 368 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 127/319 (39%), Gaps = 44/319 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E ++ L + + H LF G G GKT+ +LA Sbjct: 27 SNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPH-LLFYGPPGTGKTTT--VLAAA 83 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVD--LIEIDAASRTKVEDTRDLLDNVQYAPARG- 118 R++ + ++E++A+ ++ R+ + V +A +G Sbjct: 84 ------------------RQMYSPTKMASMVLELNASDERGIDVVRNTI--VNFAQTKGL 123 Query: 119 ------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 FK+ ++DE +++ + NAL + +E+ ++V+F + + I Sbjct: 124 QAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAI 183 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRC +F LD + I +LE+I+ E + P L ++G +R ++ Q+ A Sbjct: 184 QSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTL-QSTA 242 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN-EAAARGIEWEALLVEM 285 VS V +G + +V+ ++ ++ M I + G L ++ Sbjct: 243 MSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGY----ALQDV 298 Query: 286 LGLLHRIAMVQLSPAALGN 304 + LH P + Sbjct: 299 ITHLHDFVFTLDIPDEAMS 317 >UniRef50_Q3M1H0 DNA polymerase III, delta prime subunit n=2 Tax=Nostocaceae RepID=Q3M1H0_ANAVT Length = 307 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 41/260 (15%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGT-RGVGKTSIARLLAKGLNCET------- 66 F +++GQ L + +I AYLFS GVGK IA A + Sbjct: 6 FTEIIGQHTAKLLLTEAIERNQIAPAYLFSSEVEGVGKGKIALAFANAILSRGSRSAMAK 65 Query: 67 ---GITATPCGVCDNCREIEQGRFVDLIEIDA-----------ASRTKVEDTRDLLDNVQ 112 G + + +D+++I +VE R++++ + Sbjct: 66 HLPPPKGDAQGT----ASAGESKHLDILQIKPTYTENTSQQKSVPAIRVEQMREVIEFLS 121 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + G+ KV +I E ML+ + N LLKTLEEP + F+L ++ PQKL TI SRC Sbjct: 122 TSAVEGKQKVVIIYEADMLNPTAANKLLKTLEEP-KTGTFILISSYPQKLLPTIKSRCQI 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + L E++ L+ + I + L + + GS A++ +AS ++ Sbjct: 181 IPFQRLTDEEVISVLKD----QQIEATEKILAI----SSGSPGQAIANIK-MLASISQEI 231 Query: 233 STQAVSAMLGTLDDDQALSL 252 + + L DD +L Sbjct: 232 TKE-----LEVPPDDILKAL 246 >UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTP5_9GAMM Length = 311 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 10/223 (4%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 E +L + + GR+ HA L SG +G+GK +A LA+ L C + CG C C Sbjct: 9 HEDAWASLNSSIDSGRLPHAVLISGDQGIGKLRLATALAQRLICSAEMVKYACGTCKTCN 68 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D+ ++ K++ R L +++ +G +KV +I ++ ++ N Sbjct: 69 LFSAGSHPDITYLEPEEKGKAIKIDPVRKLCESLSKTAQQGGWKVAIIAPAEAMNINAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK LEEP +L + P +L TI SRC + + I L+ + + + Sbjct: 129 ALLKNLEEPQSKTLLILVSHRPSRLSATIRSRCQKLSM-PTPEADIA--LQWLTD---VT 182 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ A + + A G AL Q+ + V+ + Sbjct: 183 NDRIAAEQVLPLAGGRPLLALDYL-QSDNLEQRRQFETLVAEV 224 >UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax=Vibrio RepID=A5F6P8_VIBC3 Length = 324 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 L+ G+I A L + GVG S+ L+A+ L C + + PCG C +C ++ G D Sbjct: 22 LAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQ-SEPCGFCHSCGLMQSGNHPDFH 80 Query: 92 EIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + VE R + Q + +++ +I+ ++ S NALLKTLEEP Sbjct: 81 VVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPAP 140 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 + F+L T+ + L TI+SRC + L A + L+ + I AL L A Sbjct: 141 NCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWLKG----QGITTPAYALHLCAD 196 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA-LSLVEA 255 S + + A ++ +Q ++A+ G ++ ++L++A Sbjct: 197 ----SPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQLKCIALIDA 240 >UniRef50_B3T464 Putative ATPase family associated with various cellular activities (AAA) n=3 Tax=environmental samples RepID=B3T464_9ARCH Length = 318 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 121/281 (43%), Gaps = 29/281 (10%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 K+RPQ ++++ Q+ ++ ++ + L + H LFSG+ GVGKTS A Sbjct: 11 KYRPQKISELINQKEIVGSINSMLKNQSELPH-LLFSGSAGVGKTSAAL----------- 58 Query: 68 ITATPCGVCDNCREIEQGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAP---ARGRFKVY 123 C + REI + D +E++A+ + R+ + FK+ Sbjct: 59 --------CVS-REILGKHWRDYTLELNASDERGINMVRERVKKFSRFAGLDTEIPFKII 109 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + AL + E+ + +F+L + K+ I SRC+ F + ++I Sbjct: 110 ILDEADEMTADAQTALRRITEDTAKICRFILIANNLSKIIKPIQSRCVVFKFTKISDKEI 169 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 QL+ I +E I + + L + +G LR A+++ A+ G V+ V +++G Sbjct: 170 LSQLKSIGKKEKIKADEKGLSAICDYTDGDLRHAINILQ--AAASSGNVTESVVKSVVGL 227 Query: 244 LDDDQALSLVEAMVEANGERVM-ALINEAAARGIEWEALLV 283 + +++ ++ +I G+ L Sbjct: 228 TKTNDVQDVLKLALDGKISDARDKMIELIKVYGMSESDFLK 268 >UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR77_9PROT Length = 348 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 74/358 (20%), Positives = 126/358 (35%), Gaps = 49/358 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 + V L ++ HA L +G RG+GK +AR A+ L CE + CG C C Sbjct: 7 HDQVWQQLRA--RRAQLPHALLITGQRGIGKFDLARRFAESLLCENVTPAGSACGSCLAC 64 Query: 80 REIEQGRFVDLIEI-----------------------DAASRTKVEDTRDLLDNVQYAPA 116 + QG DL + A+ + ++ R L + Sbjct: 65 GWLAQGNHPDLRLLQPDALAENESSEAVEGEGGGGRKKASQQITIDQVRGLDAFLHLGTH 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R +V L+ ++R + NALLK+LEEP + F+L ++P +L TI SRC ++ Sbjct: 125 RHGVRVVLLSPAEAMNRATANALLKSLEEPIANTLFILVASEPHRLLPTIRSRCQSVPVR 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L + I LA A GS A+ L G Sbjct: 185 RPSRHLAVQWLGQAGVNDAID------DWLA-LAGGSPLLAVELA--------GSGERAL 229 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + A+L + + + A + + +A R + L L + + Sbjct: 230 LDALLAQVARTEGFDPLAAAAN------LDKLVKADKRPAPLKRTLDWAQKWLFDLTLAS 283 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + A ++ LAR + + + L + + + R+ +E L Sbjct: 284 AGLSPRYFLPQASL--LQRLARATDTGKLLAFNRKALQYKAQCEQPLNSRLFLEDFFL 339 >UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B6_LYSSC Length = 290 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 54/336 (16%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + + + G++ HAYL G+ A + + + C+ CG C NCR I+ Sbjct: 1 MKSIFQKLIWTGKLAHAYLLVGSS----LEFALWITQCVYCK---DQNACGQCANCRRIK 53 Query: 84 QGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D+ I ++ KV+ R+L G+ +V++ID + ++ ++ NALLK+ Sbjct: 54 HGNHPDVHIIVPDGTKIKVDQIRELQREAALKAVEGQKQVFIIDNANKMNENAANALLKS 113 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + +LL + + TI+SR + E ++L + ++ Sbjct: 114 LEEPLQDTLYLLVSETKNNILPTIISRVQTL---KMKEE---NRLVDEAEKNNLHL---- 163 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L++ + S + + D+ + ++ + N Sbjct: 164 -------------KYLNIYEDCNLSINQLEKYKD--------SIDEWIDVIGSTFSQNTS 202 Query: 263 RVMALI----NEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + + V M + +++ + ++ Sbjct: 203 NALLSVQTSWDNIFNDKESKHLATVLMQSYVRSALLIKRGK-----------PSIWKIDV 251 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + +K + + +E + Sbjct: 252 PYSWDQLVQLEKRVNNIQKAIYSNGHFLLAMEDFFI 287 >UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Tax=Flavobacteriaceae RepID=C6X5R9_FLAB3 Length = 372 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 120/396 (30%), Gaps = 68/396 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ + L +S R+ HA LF G G G ++A AK + + Sbjct: 1 MNWDQIVGQKKIKHLLTESISDNRVGHAQLFLGADGYGTLALAMAFAKEILKKENEH--- 57 Query: 73 CGVCDNCREIEQGRFVDLI----------------------EI---DAASRTK------- 100 +C ++ +DL E+ + S + Sbjct: 58 -----SCSKVAHLNHLDLHFSFPVFKEKSSGLSSNFAEEFREMVLNNPYSDNEDWSRILE 112 Query: 101 ---------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 ++ + G K+ ++ + ++ + N LK LEEPP+ Sbjct: 113 SENKQLTIYADEIDQVNQKFALKSFEGGSKILIVWQADKMNISAANKFLKFLEEPPKDTF 172 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 +L + + TILSR + +D + I L+ + + A+ Sbjct: 173 IILTAENGDSILPTILSRTQLVEIPRIDDKDIEEFLKKT-----YDISEEKISEIVFQAQ 227 Query: 212 GSLRDALSL-TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 G+ A L ++ V Q L + ++ V Sbjct: 228 GNWNTAQKLMLSDDSDDEFEKLFVLWVREAFQVKKKPQFLKNI--VLWGRNIAVWNR--- 282 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALG--NDMAAIELRMRELARTIPPTDIQLY 328 + + EM +A++Q + + R ++ I +I+ Sbjct: 283 --EKQKNFLHYCAEM---FR-LALLQNYGNENLVYKKIDSGGFRWDSFSKYIHGANIEAI 336 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + L + ++ ++ + + P Sbjct: 337 LNEISEADYHLERNANPKIVWTDLGIKLSRYIHKAP 372 >UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTL2_9CLOT Length = 121 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L +RPQT ++VVGQ + L ++ + AYLF+G RG GKTSIAR+LA+ + CE Sbjct: 2 LYTTYRPQTLSEVVGQTENILTLKKQMTQNKFDSAYLFAGHRGTGKTSIARILARSICCE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK-VY 123 PC C +CR + +D +E+DAAS V D ++L++ Y P + K +Y Sbjct: 62 HPTENGPCNHCKSCRSMLNNTAIDFVELDAASNNSVNDIKELINQTMYMPTNLKKKNIY 120 >UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax=Actinomycetales RepID=A4XBZ5_SALTO Length = 427 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 116/361 (32%), Gaps = 55/361 (15%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI--DAA 96 HA++F+G G G++ AR A L C G CG C C G D+ + D Sbjct: 72 HAWIFTGPPGSGRSVAARAFAAALQCGHGSG---CGACPGCHTTMAGTHADVRLVVPDGL 128 Query: 97 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 S V + R L+ P+ GR++V +I++ L+ + NALLK +EEPP FLL Sbjct: 129 S-IGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFLLCA 187 Query: 157 TD--PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 P + VTI SRC L+ + L EP A AA+G + Sbjct: 188 PSIHPDDISVTIRSRCRVVPLRQPAPAAVAEVLVR-----RDGVEPDVANWAAAAAQGHV 242 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGT------------------------LDDDQAL 250 A L A + G D + Sbjct: 243 GRARRLARDPQARTRRDAVLAVPRQLTGVGAAIDAAAALIGAAEAEAAALVADTDAAERA 302 Query: 251 SLVEAMVEANG--------ERVMALINEAAARGIE---------WEALLVEMLGLLHRIA 293 +L A+ + E R + LV++ G A Sbjct: 303 ALETALGAGGTGRRAASAFRGAAGQVKELERRQKSRATRAQRDALDRALVDLAGFYRD-A 361 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + A + AR + +L R + R+ VE + Sbjct: 362 LTMALGAPVEPVHTDTATVAGAGARKWEADGALRRLEAVLACRAAIEANVKPRIAVEAMM 421 Query: 354 L 354 L Sbjct: 422 L 422 >UniRef50_Q31HQ8 DNA polymerase III, delta prime subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HQ8_THICR Length = 325 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 G + YL SG G+G + A +A+GL C+T C C +C + Q D ++ Sbjct: 17 SGHLGQGYLLSGAEGIGLSEFAMSMAEGLLCQTN-ALQGCQNCVHCHQFAQATHPDFFQL 75 Query: 94 ---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 + ++ R L D + +G +KV LI++V +L+ +FNALLKTLEEPP Sbjct: 76 TVLEDKKEISIDQIRALTDKIYTTSHQGGYKVALIEQVELLNVSAFNALLKTLEEPPAKT 135 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 +L + LP TI+SRC + + E+ L+ L + + +AL++ Sbjct: 136 ILILTSYQTSLLPATIISRCRKIAFASPPREEALAWLQQALPQADMPLLKKALKI----N 191 Query: 211 EGSLRDALSLTDQ 223 G A + D+ Sbjct: 192 WGGPLKAKTWIDE 204 >UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa RepID=RFC4_MOUSE Length = 364 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 126/331 (38%), Gaps = 34/331 (10%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +V Q+ V+ L L + + LF G G GKTS A+ L Sbjct: 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELF 101 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------R 119 ++E++A+ ++ R+ + N G Sbjct: 102 RLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F K L Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVS 238 + + +L I +E++ + L + +EG LR A++ A +G +VS ++ Sbjct: 204 DKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVIT 263 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + G + + A + +++ A++ G L+ ++ H + + Sbjct: 264 DIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQL----HDAIIENEN 319 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLY 328 + + + + +QL Sbjct: 320 LSDKHKSIITEKLAEVDKCLADGADEHLQLM 350 >UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=Marinobacter RepID=A1U0Y9_MARAV Length = 343 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 113/337 (33%), Gaps = 32/337 (9%) Query: 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-----PCGVCDNCRE 81 + L+ R+ HA L G +GVGK + A +A L C+ + CG C C+ Sbjct: 17 TVQQRLAQDRLPHALLVVGEQGVGKRAWAEAVAGLLLCDQQVGLDDGAPIACGQCRQCQL 76 Query: 82 IEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D+ KV+ R L +P KV ++D L+ ++ NAL Sbjct: 77 IAANSHPDVRVYSPEKSRMVKVDQIRALSTFAVASPQVAHRKVAIVDRADQLNINAANAL 136 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN--EEHIA 197 LKTLEEP V LL + + TI SRC + D E L ++ EE I Sbjct: 137 LKTLEEPLPDVTLLLLQESGRPVLPTIRSRCQALTIPLPDAEDAGRWLSARVSELEESIR 196 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 P L A + R AL + + M G + Sbjct: 197 PSPDTLAKSLMLAGNAPRLALEYATGEFLAQRDEAFEAFRQFMKGQMTV----------- 245 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + R + G++ L E +A + A + + LA Sbjct: 246 -GDAARRFKTL------GLDDTLWLFE--SWAADLARCSAGGEVQDPEAADM---LGYLA 293 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 R PP + + R Y + LL Sbjct: 294 RANPPWRAHQLMERVRESRSAGIYNASPELEATQLLL 330 >UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces elongisporus RepID=A5E7K0_LODEL Length = 402 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 71/387 (18%), Positives = 140/387 (36%), Gaps = 78/387 (20%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + K+RP+ DV Q+H + L +S G + H LF G G GKTS LAK L Sbjct: 34 HTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPH-MLFYGPPGTGKTSTILALAKQL 92 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----PARG 118 G + ++E++A+ + R + N P Sbjct: 93 ---YGPNLY--------------KSR-VLELNASDERGISIVRQKIKNFAKLTVSNPTED 134 Query: 119 --------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 135 DLRNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRC 194 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEP-----RALQLLARAAEGSLRDALSLTDQAI 225 +F K L+ E ++L++I EE++ + L + R + G +R A++ A Sbjct: 195 SKFRFKLLNNENSLNRLKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSAS 254 Query: 226 ASGDG--------------------------------------QVSTQAVSAMLGTLDDD 247 ++ ++ G L D Sbjct: 255 KLSSSLQLENCKNDMNEDNKGESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDT 314 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L +VE++ + N ++ L+N+ + G + L+ ++ H + + +L + Sbjct: 315 LILQMVESIKQKNEGILINLVNDIISSGWSVQQLIDQL----HDQLVWDDTIDSLKKNQI 370 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLI 334 A+ L + + + +L Sbjct: 371 ALTLFDTDKKLNLGTDEHIQLLNLVLQ 397 >UniRef50_B9QRU5 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QRU5_9RHOB Length = 355 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 36/281 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC------------- 64 ++G T+L + R+HHA++ G +G+GK ++A AK + Sbjct: 28 LIGHGETETSLLDAYRSERLHHAWILGGPKGIGKATLAFRFAKFVLAHPDRFGPQAAMAQ 87 Query: 65 -ETGITATPCGVCDNCREIEQGRFVDLIEI-----DAASRTK----VEDTRDLLDNVQYA 114 + P R++ G +++ + D R K V++ R + Sbjct: 88 DLSVPEDHP-----VVRQVAAGGHPNILHLRRPWDDKGKRFKTDLPVDEVRRTVSFFGTT 142 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 + ++V ++D ++ S NALLK LEEPPE FL+ + P +L TI SRC + Sbjct: 143 ASARAWRVCIVDAADDMNASSANALLKILEEPPERCLFLVLSHAPGRLLPTIRSRCRRLD 202 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT--DQAIASGDGQV 232 L L I + L + H + L +AR A+GSLR AL+L D + + Sbjct: 203 LAPLSETDIANGLRDLAG--HAIPDASGLSEIARTADGSLRAALTLLAGDGLAITQGTRK 260 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 +A S M D +L + + A Sbjct: 261 LAEAGSQM----DLKALHALSDLVAARGQTDNWESFQHVAE 297 >UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5DDN5_LACTC Length = 356 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 122/302 (40%), Gaps = 35/302 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ DV Q+H + L L + H LF G G GKTS L K L Sbjct: 24 KPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPH-MLFYGPPGTGKTSTILALTKEL- 81 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----APARG- 118 G + + R ++E++A+ + RD + + P++ Sbjct: 82 --YGP------------ALMKSR---VLELNASDERGIAIVRDKIKSFARLTVSKPSQND 124 Query: 119 -------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 125 REKYPCPPYKIIILDEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCS 184 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ----AIAS 227 +F K LD +++++ EE + ++ L+ + ++G LR A+ L Sbjct: 185 KFRFKPLDSSNALSRVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHL 244 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 Q++ V + GT+ + LV + AN E + + E G +++ ++ Sbjct: 245 DPPQITALTVDELAGTVPTELLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHH 304 Query: 288 LL 289 Sbjct: 305 YY 306 >UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=A6W591_KINRD Length = 392 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 142/386 (36%), Gaps = 52/386 (13%) Query: 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 + DVVGQ + L R + HA+L +G G G+++ AR A L CE + Sbjct: 4 WDDVVGQGPAVEVLTRAARAARRGTVGMTHAWLLTGPPGSGRSTAARAFAAALACEDPVE 63 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C CR G D+ + + ED L+ Q P+ R++V ++++ Sbjct: 64 IG-CGACPGCRTALAGSHADVTVFTTEHMQIRREDVEPLIATAQRRPSVARWRVVVVEDA 122 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL- 187 L+ S N LLKT+EEPP +LL + TI SR L+ + + L Sbjct: 123 DRLNPTSGNVLLKTIEEPPPQTVWLLCAPAVDDVLPTIRSRARHVPLRVPPADAVAELLV 182 Query: 188 ------------------------EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 + +E R + L + G + +A+ + Sbjct: 183 RRDGIDPVMAAFAARAAQSHVGLARRLARDEGARIRRREVLRLPQRLRG-VGEAVVAAGE 241 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE----RVMALINEAAARGIE-- 277 + +V+ + A D + L+ A+ V + + Sbjct: 242 LV-----EVAAEEAGASTTERDARERAELLRALGADGVATVPPAVRGQVRQLEEDQKRRA 296 Query: 278 -------WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 + LV++LGLL + +VQL A + + + +R +A + P D+ Sbjct: 297 RRHQTDVLDRSLVDLLGLLRDVLVVQL-GAPVELVNSDMTGDVRAMAASSTPEDVLRRAD 355 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRA 356 + + R+ L + +E L Sbjct: 356 AVQLARQRLAQNVAPLLAIEALALTL 381 >UniRef50_C2KTQ5 Possible DNA polymerase III subunit delta' n=2 Tax=Mobiluncus mulieris RepID=C2KTQ5_9ACTO Length = 471 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA-S 97 HA+LF G G G++ A+ A L CE T CG C C + +G D+ + Sbjct: 111 HAWLFVGPPGSGRSVAAKAFAAALVCEH-PRETGCGTCRQCEAVRKGIHPDVTVMTTELV 169 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 + V + +DL+ P RG ++V ++++ ++ S N LLK +EEPPE +LL Sbjct: 170 QVTVAEVKDLIRVAYQRPVRGAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLCAP 229 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 + TI SRC L + L E +P +A + + A Sbjct: 230 SASAVLPTIRSRCRLVQLAVPTASAVADLLVRRDEVE----DPELAAAVAGESGAHIGRA 285 Query: 218 LSLTDQAIASGDGQVSTQAVSAMLGTLD------------------------DDQALSLV 253 +L + V+ M D + + +L+ Sbjct: 286 RALAKNPELRARRLRMLETVAGMRSASDACWTAAALVKYVSLEAGARQATDDEAEKSALL 345 Query: 254 EAMV----------EANGERVMALINEAAARGI------EWEALLVEMLGLLHRIAMVQL 297 ++ + + + E+ R W+ LL ++ G ++ L Sbjct: 346 RSLGVNPDDPDFHPTREVKAQLKRLEESQKRRHKRLELDTWDRLLEDLGGFYRDAMVLDL 405 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L R +A+ + + R L + + +E L Sbjct: 406 GAKTALQNQVLEPLIRRFIAQGNDAKTNIARLEAIRQARWHLMHNGQPTLTMEALCLDLT 465 Query: 358 AFHPRM 363 A + Sbjct: 466 AHKNDV 471 >UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepID=B6IMK3_RHOCS Length = 372 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 78/335 (23%), Positives = 121/335 (36%), Gaps = 56/335 (16%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK----------- 60 P+ +VG E L + GR+HHA+L G G+GK ++A +A+ Sbjct: 14 PRRNPHLVGHEQAERLLLESWTSGRMHHAWLIGGPPGIGKATLAFRMARFVLKQGTGGND 73 Query: 61 -GLNCETGI-------TATPCGVCDNCREIEQGRFVDLIEI----DAASRT-----KVED 103 L T P R I G DL+ + D + V++ Sbjct: 74 AALFGAPPPPVTLAVDTEHP-----VARRIAAGGHADLLTVQRTWDEKRKRFKRDLPVDE 128 Query: 104 TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 R + ++ A G ++V ++D ++ NALLK LEEPP L+A + L Sbjct: 129 VRRIAPFLRLTSAEGGWRVVVVDGADQMNLSGQNALLKILEEPPARSLILMAADNVGSLL 188 Query: 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 TI SR + L+ L + L + A LAR AEGS+ AL L Sbjct: 189 PTIRSRSRKLMLEPLPEATVVGLLGRYAP----ELDREAQTALARLAEGSIGRALDLH-- 242 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE--WEAL 281 G MLG L+E + + I++ + W A+ Sbjct: 243 ---HAGG---LDLYRQMLG---------LLETLPRLDVLAAYGFIDKVLRGNDDAAWSAV 287 Query: 282 LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 ++ L R+A G +A + L Sbjct: 288 TDLLVWWLGRLARTTARGQLPGEVVAGEGPLIARL 322 >UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Tax=Trypanosomatidae RepID=Q4FWE5_LEIMA Length = 364 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S+ K+RP T VV E +L+ L + + G + H L G G GKT+ + Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPH-LLLYGPPGTGKTTTIK----- 68 Query: 62 LNCETGITATPCGVCDNCREIEQGRFV---DLIEIDAASRTKVEDTRDLLDNVQYAPA-- 116 C G+ +++E++A+ ++ R + Sbjct: 69 ----------------ACAYYLYGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIF 112 Query: 117 ----------------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 +FK+ ++DE +S + AL + +E+ +V+F + Sbjct: 113 SMMGTGSSTGGGSGGPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHIN 172 Query: 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL 220 K+ + SRC +F + + +L ++ +E + + L R + G LR L+ Sbjct: 173 KIIPALQSRCTRFRFAPVKKSSMMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNT 232 Query: 221 TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWE 279 QA A +++ ++V + G ++V M+ ++ E +GI Sbjct: 233 M-QASALSANEITEESVYRVTGNPTPADVTAIVSDMLSSDFATSWVKAEESVVQKGISMA 291 Query: 280 ALLVEM 285 L E+ Sbjct: 292 DLTREI 297 >UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD0_9FIRM Length = 304 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 18/222 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q V L+N L R+ +AYLF G +G K A L A+ + CE C C++C Sbjct: 10 QPVVYQMLSNALKNQRVANAYLFHGPKGSSKLETAILFAQSIICEHTDNDGFACQECESC 69 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF---KVYLIDEVHMLSRHSF 136 + IE +D + + + R K +D DL + ++Y++D + + Sbjct: 70 KRIENEESLDYMIV-SNDRIKKKDIVDLQ--TFFESTSAGKQNARIYILDHYDKATPDAS 126 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N+LLK LEEP E + +L + + TI SRC H K E + L +EE+ Sbjct: 127 NSLLKFLEEPSEGIYGILIADEKSNVLPTIQSRCQAIHFKPESCEHL---LLENTSEEN- 182 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++LA + + A+ L Q++ + + Sbjct: 183 ------AKMLAE-SGYTYDKAIELLSLPDFEELKQIALEYIE 217 >UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , putative n=3 Tax=Piroplasmida RepID=Q4UIH2_THEAN Length = 336 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 125/298 (41%), Gaps = 42/298 (14%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +DV+ Q ++ + + + H +F G G GKTS A +A+ + G+ Sbjct: 12 KYRPKKISDVIFQTQAVSIMEQIIETFNMPH-MIFHGPPGTGKTSAALAMARQIYGLEGM 70 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD--------NVQYAPARGR- 119 ++E++A+ ++ RD + N + P R Sbjct: 71 RER------------------VLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRV 112 Query: 120 ---FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 +K+ ++DE M++ + AL + +E +F+L K+ I SRC FH K Sbjct: 113 MPNYKMIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFK 172 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---GQVS 233 ++ +L++I N+E I +P+ L + + G +R ++++ + S +++ Sbjct: 173 PIETNSQIDRLKYICNQEGITFDPKFLTTI---SSGDMRKSITILQVILGSTACLYNEIT 229 Query: 234 TQAVSAMLGTLDDDQALSLVEAMV--EANGERVMALINEAAARGIEWEALLVEMLGLL 289 A+ ++ G S+ E E + E V + G + ++ ++ + Sbjct: 230 ENAIYSVSGKPPKRVVESIFEVCRRPEGDVESV---CKQIVHDGWDISSIFQQICEYV 284 >UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21K67_SACD2 Length = 331 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 38/331 (11%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 L+ R+ HA L +G G+G ++A+ + + L C + + CG C C+ ++ G DL+ Sbjct: 23 LAQKRVPHALLITGQEGLGSDTLAKAMGQLLLCLSPLEGIACGKCRACQLLQAGSHPDLL 82 Query: 92 EI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 I +A + K++ R + + V +G KV ++ ++ +S NALLK+LEEP Sbjct: 83 WIAPEEAGKQIKIDQIRRVTEFVSKTAQQGGKKVVVVTPTEAMNNNSSNALLKSLEEPAG 142 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 +L T ++ TI SRC + L + + L+ ++ A+ LL Sbjct: 143 DTVLILITFQESQILPTIRSRCARIVLTTPSYDVAQSWLQENGHQ-------AAIPLLGE 195 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A A G + T+ V +A++ +E + V A+ Sbjct: 196 AGG------------APLKGVEWLKTEYVEQ------RQKAMACLEQLASQTRGPVSAVA 237 Query: 269 NEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR---TIPPTDI 325 GI L+ ML L+ + +L+P+++ + ++ LA+ + + Sbjct: 238 Q---LGGISAPVLVELMLNLVDSLITTKLAPSSVRA--EQRQESIQPLAQYMARVSGQML 292 Query: 326 QLYYQTLLIGRKELPYAP--DRRMGVEMTLL 354 + + L + +L ++ + +E L+ Sbjct: 293 FRFRERLCEQKLKLIRNANLNQTLFIEELLM 323 >UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacteroidales RepID=B6YQP6_AZOPC Length = 378 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 133/403 (33%), Gaps = 81/403 (20%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ + L + G I HA L +G +G G +A + L C Sbjct: 1 MFFRNIVGQTIIKQRLIQSVKDGFIPHAQLITGNQGTGTLILALAYIRYLYCTNRQEKDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI----------------------------------DAAS- 97 CG C +C++ ++ DL I D S Sbjct: 61 CGTCPSCQKFDKLVHPDLHFIFPIINKKRREDKKEALCHDFLPEWRNFVLTTPYADFTSW 120 Query: 98 --RTKVEDTR---------DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 E+ + D++ +++ +K +I + + + LLK LEEP Sbjct: 121 LINIGEENAQGLIYARESDDIMRKLRFKAYEADYKSVIIWLPEKMHETAASRLLKLLEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PE FLL + +P K+ TI SR + + + + L +E + + Sbjct: 181 PEKTVFLLVSEEPDKIIATICSRMQVMAVPPIADQDLFQTL-----QEKYDIPDQDIWHA 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV----EANGE 262 R AEGS A + D++ L+L ++ + N Sbjct: 236 IRLAEGSYEKATKILSSVE-------------------DNESYLNLFTTIMRNSWQKNIL 276 Query: 263 RVMALINEA----AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + ++ A+ ++ +M+ + +L+ + + Sbjct: 277 SIKVETDKFTSMSRAQQKKFLMYAQQMI---RENFLYRLNELKINFMNHKENEFAIKFHP 333 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + T++ + + + + + + RM ++ +A Sbjct: 334 YVNETNVIKFMEEFSLAEQHIESNINPRMVFFDLSMKIIALLN 376 >UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bacteroidales RepID=C7X8N1_9PORP Length = 374 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 129/381 (33%), Gaps = 64/381 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQE V L G + HA LF+ G G +A A+ LNC Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCTNRTDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLI----------------------------------------E 92 CG C +C + ++ DL Sbjct: 61 CGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEWLDY 120 Query: 93 IDAASRTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 I+A + + +++ +++ + +++ ++ L N LLK +EEPP Sbjct: 121 IEAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKIIEEPPMR 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 L+ + P + TI SR + H++ ++ + I + + P + +A Sbjct: 181 TVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNAMVS-----RFGLSPDDAKHVAHL 235 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 + GS A+ +AI+ G+ +Q +++ N + + A+ + Sbjct: 236 SSGSFIKAM----EAISLGEENKFF-----------LEQFKAMMRNSWARNVKGMKAMAD 280 Query: 270 EAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 A G E + L L+ M + L + + + ++ Sbjct: 281 VMAGIGRERQKNFLSYCQHLIRENFMYRFQSPELNYMNLDEASFSVKFSPFVNERNVIDL 340 Query: 329 YQTLLIGRKELPYAPDRRMGV 349 + L + + + +M Sbjct: 341 MEELAKAERHITQNVNAKMVF 361 >UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8D9_TOLAT Length = 319 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 + R+ HA+L G G+GK+++A A CE TPCG C C+ + Sbjct: 12 FQQVFASKRLPHAFLLVGPAGIGKSALAVQWASLFLCEQPQQNTPCGKCHACQLSGKQTH 71 Query: 88 VDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 D A A V+ R L + +P GR KV +I + ++ + NALLKTLEE Sbjct: 72 PDWHVYGADDAKSIGVDIIRQLSAQLMNSPQLGRGKVAVILQAERMTEAAENALLKTLEE 131 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP + +L KL TI+SRC + L+A + +Q L+ L P L+L Sbjct: 132 PPGNSLLILQAESAMKLLPTIVSRCQVWTLQA-EEQQALTWLQQQLP--GREITPALLRL 188 >UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LA68_9ALVE Length = 514 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 115/289 (39%), Gaps = 25/289 (8%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP + +DVVG E + L ++ R L SG G GKT+ LA+ L E + Sbjct: 20 KYRPISLSDVVGNEPAMQRL-RAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGEDLV 78 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 123 ++E++A+ ++ R+ + + + K+ Sbjct: 79 KTA------------------VLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIV 120 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + A+ +T+E +F LA K+ I SRC L I Sbjct: 121 ILDEADSMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDI 180 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 Q++ + + E + L+ L AEG +R AL+ Q+ A+G G V+ + V + Sbjct: 181 EAQVKKVADMEGVQLRGDGLEALIFTAEGDMRAALNNL-QSTATGFGVVTRENVFKVCDQ 239 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + V + +++ A+G ++ + ++ + Sbjct: 240 PQPGELKQATLDCVNNDWCSAFDRLDKITAQGYSIGDIVGTLERVIRNL 288 >UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronobacter RepID=C9Y1I8_CROTZ Length = 342 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 120/332 (36%), Gaps = 41/332 (12%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 RP +F +VG GR HHA L G+G ++ L++ C+ Sbjct: 15 RP-SFEHLVGNWQA----------GRGHHAVLIHALPGMGDDALIYALSRWRMCQQPQGQ 63 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 CG C C+ ++ G D + + S ++ RD+ + + G KV I E Sbjct: 64 KSCGECRACQLMQAGTHPDYYQAEPEKGKSTLGIDAIRDISEKLYDRARLGGAKVVWIKE 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 L+ + NALLKTLEEPPE+ FLL +P++LP T+ SRC +HL + L Sbjct: 124 AAQLTEAAANALLKTLEEPPENTWFLLGCREPEQLPATLRSRCFSWHLAPPETRYAEAWL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 I EP + R G+ AL L LG Sbjct: 184 AR-----EIQAEPSRINAALRLTGGAPAAALELLQPEQWQQ---------RVALG----- 224 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 + A+ + ++ +N + L + L + A Sbjct: 225 --EKITAALTSGDWLSLLPALNH-----EQAPFRLHWLAAFLMDALKWRHGAQAAL-VNT 276 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 + + +LA+ P Q +L R L Sbjct: 277 DYPVLVAQLAQRFSPAVTQAMLDSLFRCRDRL 308 >UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=Methylophilaceae RepID=C6XDK0_METSD Length = 340 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 128/345 (37%), Gaps = 55/345 (15%) Query: 32 LSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVD 89 ++ + + HA L G G+GK A+ L+K L C+ CGVC +C QG D Sbjct: 19 IAQRKTLPHAMLLRGPAGIGKLQFAQALSKALLCQQPQADGHACGVCASCGWFAQGSHPD 78 Query: 90 LIEIDAA------------------SRTKVEDTRDLLDNVQYAPA-RGRFKVYLIDEVHM 130 + ++ V R+L ++ + ++ LI Sbjct: 79 FRLLAPEQDQADEDAPAPAKPTTKKTQISVAQVRELGGFLELSSHHNDGVRIALICPAEG 138 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ S NALLK LEEPP V FLL PQ+L TI SRC + + V ++ L + Sbjct: 139 LNVASANALLKMLEEPPPGVVFLLVAHQPQRLLPTITSRCRKVD---MPVPDMQGALSWL 195 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + ++L A GS A DQA +G + + A L A Sbjct: 196 ---NGQGVDQAEVRL--AYAGGSPMAAR---DQA----EGSKPLELILAQLARGAGADAY 243 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 SL + M ++ + L+ + + + A + + Sbjct: 244 SLATMLNALGMAEAMRVLQK-----------------WLYDLLACRFAVQARYHIL--HN 284 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ LA+++ + + L + + + + +E +L+ Sbjct: 285 AALQALAKSVDLAQMLELQRKLDDAYRSATHPLNNELQLESLMLQ 329 >UniRef50_Q5UP47 Putative replication factor C small subunit L499 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS3_MIMIV Length = 344 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 124/323 (38%), Gaps = 54/323 (16%) Query: 1 MSY-------------QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTR 47 MSY K+RPQ ++ ++ +L + + H LF G Sbjct: 1 MSYYETIASRTEPKKQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPH-LLFFGPS 59 Query: 48 GVGKTS----IAR-LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE 102 G GKTS AR + K +N ++E++A++ +E Sbjct: 60 GSGKTSTIKCCAREIYGKYINYM------------------------ILELNASNERGIE 95 Query: 103 DTRDLLDNVQ------YAPARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 R + N + P R FK+ ++DE+ ++ + L +T+E+ +F L Sbjct: 96 TVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCL 155 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 D K+ + + SRC F L+ + +L I E + +E A+ + + ++G + Sbjct: 156 ICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDM 215 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD---QALSLVEAMVEANGERVMALINEA 271 R A++ G ++T+ V + G + ++ ++ + + + +N+ Sbjct: 216 RSAINTLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDI 275 Query: 272 AARGIEWEALLVEMLGLLHRIAM 294 E + +L L I M Sbjct: 276 ITIVTENNITIFNLLEELKNIVM 298 >UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=Apicomplexa RepID=B3L1L0_PLAKH Length = 339 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 133/336 (39%), Gaps = 30/336 (8%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ DVVG V+ L + + G + + L +G G GKT+ + C Sbjct: 21 KYRPENLDDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTT-------SILCLASE 72 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-----VQYAPARGRFKVY 123 P + + ++E++A+ + RD + + + P G+ K+ Sbjct: 73 MLGP----------QAKKA--VLELNASDDRGINVIRDRIKSFAKEIISLPP--GKHKII 118 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DEV ++ + +L + +E + +F LA +K+ + SRC L +Q+ Sbjct: 119 ILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQV 178 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++ I E+I + L+ L A+G LR A++ Q+ +G ++ + V + Sbjct: 179 LKRIVKICEMENIKYTDDGLETLTFIADGDLRKAVNCL-QSTYAGLEVINKENVLHICDI 237 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ +L++ + + ++ + + G + + +L R + S Sbjct: 238 PSPERIENLLKFCINSEWKKAHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIEF 297 Query: 304 NDMAAIELRMRE--LARTIPPTDIQLYYQTLLIGRK 337 + A+ LA I + + + Sbjct: 298 LKIGAMACNTMASGLASVIQLDRLLADWCIAAKALR 333 >UniRef50_Q01Q28 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q28_SOLUE Length = 342 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 134/362 (37%), Gaps = 45/362 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL-AKGLNCETGITATPC 73 F + G V AL ++ R+ LFSG GVGK ++AR L A+ L I Sbjct: 2 FENFWGNTAVTEALEQMIAQQRVSQTLLFSGPEGVGKATLARRLGARLLAHPELIERDDL 61 Query: 74 GVCDNCREIEQG----------------RFVDLIEI---DAASRTKVEDTRDLLDNVQYA 114 + +N I D + + + TR L D QY Sbjct: 62 ALPENLETIATREKWTAEKRNEDPLQFATHPDFVTFPPDGPLRQISIPQTRRLKDAAQYL 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P +G +++LID V + + N+LLKTLEEPP+H+ ++ + L TI SR + F+ Sbjct: 122 PHKGSRRIFLIDHVDRANDQAANSLLKTLEEPPDHLILIMTAQNAYDLLPTIRSRAVPFY 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L ++R ++ + R + L A GS A+SL +A Sbjct: 182 FAPLAPAEMRAFVK----ARGLDQPERRIALAA----GSPGIAMSLDLEAYD-KRRAAML 232 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + A G + + E + + E++ E L + LL + M Sbjct: 233 VLLKAAAGAAPFSAWIPIGETIGRSKSEKL--------------ELYLKVLYELLRDLLM 278 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + N I + L+ I T I+ + L + + ++ +L Sbjct: 279 LHEGGGEIRN--QDIRRDLEVLSAKIEFTWIRKAVTRVDEVAMLLRRNIQKTIALDALIL 336 Query: 355 RA 356 Sbjct: 337 EL 338 >UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNA5_ESV1 Length = 326 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 122/300 (40%), Gaps = 43/300 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+ DVV +H+ L G + H LF G G GKTS LA+ L Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPH-LLFHGPPGTGKTSTILALARTLL 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ------YAPAR 117 E + ++E++A+ ++ RD + + P Sbjct: 61 GEGNMRER------------------VLELNASDERGLDVVRDKIKTFSKMSISSFQPGC 102 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK---FLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + +AL +T+E H F L K+ + SRC +F Sbjct: 103 PPFKLVILDEADTMTADAQSALRRTME---THSVVTRFCLVCNYVSKIIAPLASRCAKFR 159 Query: 175 LKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 L + ++ +L HI E+I E L + +++ G +R A++L S + Sbjct: 160 FSTLAPKSMKGRLLHICERENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTV--SQQPR 217 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANG------ERVMALINEAAARGIEWEALLVEM 285 V+ +++ + G + ++ ++ + V + E V ++ G +L E+ Sbjct: 218 VTPESIVEIAGEVP-ERVFDMLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEI 276 >UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alphaproteobacteria RepID=A7HXT6_PARL1 Length = 387 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 55/373 (14%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK-GLNC------ 64 P+ A +VGQE AL GR+HHA+L +G +G+GK ++A +A+ L+ Sbjct: 18 PREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEAA 77 Query: 65 ----ETGITATPCGVCDNCREIEQGRFVDLIEI-----DAASR----TKVEDTRDLLDNV 111 + +P + ++ G +L+ + D + V++ R + Sbjct: 78 RAAGARDLNISPDEGVFH--QVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFF 135 Query: 112 QYAPAR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 G ++V +ID ++ +S NALLK LEEPP + FL+ + P +L TI SRC Sbjct: 136 GLTATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRC 195 Query: 171 LQFHLKALDVEQIRHQLE------HILNEE---HIAHEPRALQL-LARAAEGSLRDALSL 220 + L I +E +E A P A + +A+ AEGS ALS+ Sbjct: 196 RTLRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALSI 255 Query: 221 TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE--W 278 A+G G LG + L+ + + V A ++A +G + + Sbjct: 256 -----AAGGG----------LGL--YKELAGLLAGLPRLDIAAVHAFADKAGRKGADDAY 298 Query: 279 EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI--GR 336 E ++ + L R+ + +A M LA ++ + R Sbjct: 299 ETMIELLTHWLQRLVRTGAGLHPGPDIVAGEGAAMARLAAGGSLDRWVEVWEKINQSTAR 358 Query: 337 KELPYAPDRRMGV 349 E DR++ + Sbjct: 359 GE-ALNTDRKLVI 370 >UniRef50_B0JX76 DNA polymerase III delta prime subunit n=19 Tax=Cyanobacteria RepID=B0JX76_MICAN Length = 321 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 123/371 (33%), Gaps = 79/371 (21%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 ++ ++GQ + L L + I AYLF+G +G+G+ A+ + L +P Sbjct: 4 WSRLIGQNQAIELLQRALEINSIAPAYLFAGAKGIGRNLAAKCFCQDLL---TRDRSPET 60 Query: 75 VCDNCREIEQGRFVDLIEIDA---------------ASR--------TKVEDTRDLLDNV 111 + G DL+ I+ S ++E R++ + + Sbjct: 61 RELILKRFLGGNHPDLLWIEPTYQHQGKLLTAKEAQESNLKRKAPPQIRIEQIREITNFL 120 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P V +I++ ++ + NALLKTLEEP +L P L T++SRC Sbjct: 121 SRPPLESSRSVVVIEQADTMTESAANALLKTLEEP-GKATLILIAPSPSSLLPTLVSRCQ 179 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + L E + L + + + + A+GS +A++ + Sbjct: 180 HIPFQRLSEENLAQVLRSNGHARVLNY-----PAILGLAQGSPGEAIAALE--------- 225 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 ++++ + R ++ ++ +E ++ + L + Sbjct: 226 --------------------FLDSL-PQDLPRSLSKFPLKLSQALELAKIIAQTLDTETQ 264 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 + V + R + L R++L R+ E Sbjct: 265 LWYVSY------LQYEDWQRRRER-----------SILEILEKTRRQLLAYVQPRLVWEC 307 Query: 352 TLLRALAFHPR 362 T L Sbjct: 308 TFLALAKLSTA 318 >UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EG83_PARTE Length = 384 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 133/343 (38%), Gaps = 43/343 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+T +V G ++ L +G + + + G G+GKTS + C Sbjct: 10 KYRPKTLDEVHGNSDIVDKLRAIAKMGNLPN-IILVGPPGIGKTS-------SVLCLA-- 59 Query: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPA---RGRFKVYL 124 R+I + ++E++A+ +E R+ + G+ K+ + Sbjct: 60 -----------RQILGDSIKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVI 108 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE L+ + AL + + +F+L+ D KL I SRC L ++IR Sbjct: 109 LDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIR 168 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L I+++E + + L L AEG +R A++ QA +G G V+ + V + Sbjct: 169 DRLLEIISQESVTYTKDGLDALTFTAEGDMRQAINNL-QATFTGFGLVNRENVFKVCDVP 227 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL-------------VEM-LGLLH 290 + D +++ M++ + +L+ G + ++ L Sbjct: 228 NVDDLKKILDHMLKGEFQPAQSLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDLQFEFLR 287 Query: 291 RIAMVQL---SPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 +IA ++ A I +M + + + I Sbjct: 288 QIAFLKARILEGIADVLIDVWIHCQMLQYIQKLSQQMIIQMLN 330 >UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliivibrio RepID=B5FG33_VIBFM Length = 327 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 133/339 (39%), Gaps = 41/339 (12%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 R+ HA L + G G+ ++ + A L C T PCG C +C I+ DL I Sbjct: 22 NDRLPHAILCAMPIGAGREALVQYFADTLLCLT-QGIEPCGFCHSCELIKSQTHPDLHWI 80 Query: 94 DAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 VE R + +V +ID ++ + NALLKTLE PP++ Sbjct: 81 KPETEGKSISVEQIRQCNSWALESSQFNAKRVIIIDPAEKMTESAANALLKTLEAPPKNC 140 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 +F+L P +L TI SRC +H +D E I L+ E+++ +++ L Sbjct: 141 QFVLLADSPHQLLPTIRSRCQVWHQSKIDAESITIWLK---ETENLSVSMQSIAL----- 192 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN---GERVMAL 267 D+L L + Q L Q LS E+ V+++ ++ Sbjct: 193 ----NDSLPLAV--------KSFYQDKKQAL----HKQLLSDFESCVKSDFCQTADIVKT 236 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + + + G+ W + L+ + ++ ++Q + LA+T+ + Sbjct: 237 VLKLESEGLTWLSYLLADIQK-RQMGIMQPW------VHCDEIKLIESLAKTLSSNVVYK 289 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLR-ALAFHPRMPL 365 Y L +++L + E+ L + F + + Sbjct: 290 QYIALNSLQEQLD--SFPGLNKELLLTQWMFEFTGELSV 326 >UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA Length = 361 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 117/293 (39%), Gaps = 33/293 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP++ DVV Q V+ L LS + + L G G GKTS +LA Sbjct: 41 KYRPKSVDDVVEQAEVVAVLRESLSTTDLPN-LLLYGPPGTGKTST--ILAAA------- 90 Query: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARG--------- 118 R++ F + ++E++A+ + R+ + A G Sbjct: 91 -----------RQLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLTASGTRTDGKPCP 139 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE ++ + AL +T+E+ + +F L ++ I SRC +F K L Sbjct: 140 PFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPL 199 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQA 236 E+I +L +I ++E + + + + + G LR A++ + ++ Q Sbjct: 200 GEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSCHRLKGAQARIERQD 259 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + M G + + + +N ++ + + L ++ + Sbjct: 260 ILEMSGVVPERYLEEFISVCKSSNYSKLEEYVQNLSYDAYSVGQLFEQLTEYI 312 >UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=Caulobacteraceae RepID=C5SNN8_9CAUL Length = 336 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 17/229 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 Q F + G+ L LS GR+HHA+L G GVGK ++A A+ L Sbjct: 15 QVFDFIQGEAQETAFLD-ALSRGRLHHAWLLCGPEGVGKATLAYRAARYLMGHQRDRGFG 73 Query: 73 ----CGVCDNCREIEQGRFVDLIEIDAA-------SRTKVEDTRDLLDNVQYAPARGRFK 121 + R I DL+ ++ V+ R++++ AP+R ++ Sbjct: 74 ILGMSEEDPDARLIVAQSHPDLLVLEREQKDGKTRKNITVDAVREVVEFFSKAPSRSAYR 133 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++D V L+ +S NALLK LEEPPE L + P KL TI SRC + D E Sbjct: 134 VCIVDAVDDLNINSANALLKILEEPPERGLLFLISHSPGKLLATIRSRCRRLGFSPWDDE 193 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 ++ + P L+ L A+GS L L ++ D Sbjct: 194 AVQRFISARA-----DLSPEQLERLVVMAKGSPGKGLRLWEEGALEMDE 237 >UniRef50_Q3IHC2 Putative DNA polymerase III delta' subunit n=2 Tax=Alteromonadales RepID=Q3IHC2_PSEHT Length = 304 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--------GITATPCGV 75 + L R HHA LFSG GVGK + A LA L C + CG Sbjct: 9 IEQRLTQSFKAQRFHHAQLFSGPIGVGKFAFASQLANALLCNNIAEQVAAKKSVLSACGQ 68 Query: 76 CDNCREIEQGRFVD--LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +C I+ G D L ++D S V+D R + D + ++ A+ KV +I+ ++ Sbjct: 69 CKSCLLIKAGTHPDKRLTQVDGQS-IGVDDIRGISDFMHHSAAQNGNKVAIIENCEKMTT 127 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + NALLKTLEEP + +L ++ +LP T+LSRC Sbjct: 128 AAANALLKTLEEPSQSRFLILTSSQATQLPATVLSRC 164 >UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V935_NOSCE Length = 310 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 114/276 (41%), Gaps = 31/276 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP++F +V G + V+ L + R+ LF G G GKT+ R+++ Sbjct: 1 MS-IPFVEKYRPKSFDEVEGNQEVIVCLK-AIQESRVIPNMLFYGPPGTGKTTSIRIISN 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L ++E++A+ + R+ + +A Sbjct: 59 SL-----------------------PNTSVLELNASDERGISVVRETIKE--FASTYSNT 93 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ ++DEV ++R + NAL + +E+ +F L P+K+ I SRC +F + Sbjct: 94 IKLVVLDEVDFMTRDAQNALRRIMEDFSSTTRFCLIANYPKKIITPITSRCSKFRFNPVK 153 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + R + I +E+I E + L + + G +R ++ QAI G ++ + V Sbjct: 154 I--FRKSVLEICKKENIEVEYTGIDFLMKTSYGDMRRVVNDI-QAIGKSFGIINQETVLK 210 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 L ++ + + + + + ++ + Sbjct: 211 FNSMLSTEEFKEIFDWFLCKSYDALLRDLESIKETK 246 >UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=Rhizobium/Agrobacterium group RepID=B9JWB1_AGRVS Length = 346 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 132/337 (39%), Gaps = 35/337 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT------ 69 + G LA+ G++HHA L G G+GK ++A A + Sbjct: 23 DRMFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSHPDPASAPFVI 82 Query: 70 ATPCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRF 120 A P R+I G +L+ I S VE+ R G + Sbjct: 83 ADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEIRKAGHFFSQTSGGGNW 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ ++D ++R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L+ L V Sbjct: 143 RIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSRCMPLKLQTLGV 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ--AVS 238 + + L H+ ++ + L+ ++GS+ AL L I G ++ A+ Sbjct: 203 DDLASALAHL----GVSPPVEQMAALSDLSKGSVSQALKL----INYGGMEIIAAFNAIL 254 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-L 297 A G Q L +A+ + + + E L ++ ++AM L Sbjct: 255 ASEGPAARKQMHKLADALSAKDSDVIYHFF---------IEHLSEFLMDNARQVAMAGDL 305 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 + A + +++ + +A Q + L Sbjct: 306 ARAERLSRLSSAIIEKLGVAGAYNLDRKQTLLEILGE 342 >UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=Streptococcus RepID=Q5M0Z8_STRT1 Length = 291 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 11/231 (4%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + + R+ HAYLFSG G +A LA+ C T PC C CR Sbjct: 7 QRKLFEEFSQIIRENRLSHAYLFSGDFGS--LDMAIWLAQSRFCLTPEDGLPCSHCRPCR 64 Query: 81 EIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I QG F D+ ++ + K + R L + G +V++I + + ++ N+L Sbjct: 65 LIAQGDFSDVKLVEPQGQIIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKMHVNAANSL 124 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP + L T D ++ TI SR F+ LE +L E + Sbjct: 125 LKFIEEPQSQIYIFLLTADDSRILPTIKSRAQLFYFPKNK-----AYLEDLLQREGLLLT 179 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 ++LA A+ ALSL+ + + ++L D Sbjct: 180 Q--AKVLADFAK-DETQALSLSKDKKVLDVIDIVERFEQSLLANHDLLYLD 227 >UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PK32_CHIPD Length = 379 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 62/401 (15%), Positives = 120/401 (29%), Gaps = 69/401 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE + L R+ HA + G G + A+ L CE Sbjct: 1 MLFSNVIGQEDIQQQLIRSTENNRLGHANIILAPEGAGGLPLGLAFAQYLVCENKQPDGA 60 Query: 73 CGVCDNCREIEQGRFVDLIE-------------------------ID------------- 94 CG C C + + D+ ID Sbjct: 61 CGQCQACTKAGRYIHPDIHFSYPVIPRKPGDKPISSDYAAEWREFIDTHPYGNAYDWLQF 120 Query: 95 -----AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + +D++ + +K+ L+ L N LLK +EEPP++ Sbjct: 121 IGAENKQGNITAMECQDIIRKLSLKSFESTYKILLMWMPEYLGNEG-NRLLKLIEEPPDN 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + +++ TILSR + L E + L N + A Sbjct: 180 TIFLLVAENQEQILATILSRTHLIKVNPLPKEVVVDALIKRAN-----IPAAKARQAATI 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A G+ R+AL + + + + + + N + + Sbjct: 235 ASGNYREALYMLQHSDDDY-----------------HELLRNWLNYIFTGNRVALQGWVE 277 Query: 270 EAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 A+ + + L + LL ++ + +L + ++ Sbjct: 278 GIASAKMGRENQKQFLRYFINLLEHTLRLKYIDRSQLAFAEEETDFAFKLQKLADLHQME 337 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 Q L + + ++ ++ + P+P Sbjct: 338 QIMQELDNACYYIERNANAKLLFHALSIKLQYIFKKRPIPA 378 >UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Enterobacteriaceae RepID=HOLB_YERPE Length = 340 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 126/350 (36%), Gaps = 42/350 (12%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 +R +VGQ S GR HHA L G G+ ++ L++ L C+ Sbjct: 11 YR-----QLVGQH----------STGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQG 55 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C +CR + G D + S VE R L+D + +G KV + Sbjct: 56 EKSCGECHSCRLMLAGNHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLP 115 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 +L+ + NALLKTLEEPPE FLL P L T+ SRC ++L D Sbjct: 116 HAEVLTDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWYLACPDTAICLQW 175 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L + I EP A+ + +EG+ A L S + + S + L+ Sbjct: 176 LNLQWRKRQIPVEPVAMLAALKLSEGAPLAAERLLQPERWS----IRSALCSGLREALNR 231 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 LSL+ + + + + LL Q Sbjct: 232 SDLLSLLPQLNHDDAAERLQW-----------------LSSLLLDALKWQQGAGEFA-VN 273 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLL 354 +++LA + + L R +L +R + + LL Sbjct: 274 QDQLPLVQQLAHIAATPVLLQLAKQLAHCRHQLLSVVGVNRELLLTEQLL 323 >UniRef50_A8LF28 DNA-directed DNA polymerase n=10 Tax=Actinomycetales RepID=A8LF28_FRASN Length = 418 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 85/415 (20%), Positives = 137/415 (33%), Gaps = 82/415 (19%) Query: 15 FADVVGQEHVLTALA------------NGLSLGR--IHHAYLFSGTRGVGKTSIARLLAK 60 + +VGQ+ V+ L L+ R + H++LF+G G G AR A Sbjct: 10 WDTLVGQDAVVATLTAAATAAALVTEGGSLAAARAGMTHSWLFTGPAGSGLADAARAFAA 69 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 119 GL CE CG C C + DL + V D R L+ + AP+ GR Sbjct: 70 GLLCENIPPG--CGQCPGCHTVLSDTAADLRTVRPEGLSIGVRDVRALIRDAASAPSAGR 127 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++ LI++ + + NALLK LEEP E FLL + TI SRC L+ + Sbjct: 128 WRILLIEDADRFTDSAANALLKALEEPAERAVFLLCAPSVDDVLPTIRSRCRSVALRLPN 187 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--------- 230 + + L E + +LA+A++G + A L A Sbjct: 188 PKNVADVLIREGTAEDL------AAVLAQASQGHVGQARRLATDPQARARRESVLRLPSR 241 Query: 231 ------------------------------QVSTQAVSAMLGTLDDDQALSLVEA----- 255 +V T+A+ LG A Sbjct: 242 LRRVGDCLAAAADLVDAANADAQAANAERDEVETEALKTALGVGATSSGTRSTSARGAKA 301 Query: 256 ------MVEANGERVMALINEAAARG------IEWEALLVEMLGLLHRIAMVQLSPAALG 303 + + + + LV++ GL + + QL + Sbjct: 302 GAKPRSLQVRGAAGALKELERTQKSRGRRTVLDSLDRALVDLAGLYRDVLVQQLRGQ-VT 360 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP--DRRMGVEMTLLRA 356 + +LA P ++ +L R+ L P ++ E L Sbjct: 361 PVHLDQADAVAQLAAAATPEQTLRRWEAVLATRQALADNPGLVPQLAAESLALTL 415 >UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH Length = 329 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 130/334 (38%), Gaps = 51/334 (15%) Query: 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVDLIEI 93 R+ A L +G +G+GK AR LA+ L CE + CG C+ CR G D + Sbjct: 19 ERLPGALLLAGPQGIGKDRFARFLAQSLLCEQPVADHAACGECEACRWFAAGNHPDYRYL 78 Query: 94 DAASR-----------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 SR K+E RD++D Q RG +V +++ L+ + NALLK Sbjct: 79 APESREDDKGARRLAQIKIEAIRDMIDFAQLTAHRGGRRVIVLEPAEALNLAAANALLKI 138 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPE V F+L P++L T+LSRC L D EQ L Sbjct: 139 LEEPPEDVHFILVAHHPRRLLPTLLSRCRTLVLTPPDAEQALDWLT-------------- 184 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA---LSLVEAMVEA 259 A G + DA Q +A G A + ++ L++ + Sbjct: 185 -------ANG-VADA----GQELAHAGG--------APFALTEPERIPLRERLIDTLAHP 224 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + +++++ E + L + LH + V L+ + + + LA Sbjct: 225 DAGQILSVAAELDRARLALAEPLDWLRKWLHDLMSVTLAGS--VRYHPERQAELSRLAGR 282 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + LL + + R+ +E L Sbjct: 283 TDAVRLVRFDRELLERVPFGQHTLNVRLQLEALL 316 >UniRef50_B8GWH2 DNA polymerase III, delta' subunit n=7 Tax=Caulobacteraceae RepID=B8GWH2_CAUCN Length = 336 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 132/343 (38%), Gaps = 43/343 (12%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PC 73 GQ A + L GR+HHA+L +G GVGK ++A +A+ L + P Sbjct: 16 GQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPDPSQGLLGAAPS 75 Query: 74 GVCDNCREIEQGRFVDLIEID-------AASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 V R++ DL+ ++ A V++ R L + +PA ++V +ID Sbjct: 76 DVVS--RQVAARSHPDLMVLERLTDDGKARKSIPVDEARKLPEFFANSPAVSPYRVAIID 133 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 L+ ++ NA+LKTLEEPP LL + P KL TI SRC + + A V Sbjct: 134 AADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRLAIPAPGVAAAAEM 193 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 +E + + H E LAR A G+ AL L A + + + L LD+ Sbjct: 194 VERMADVPHRDAER-----LARMAHGAPGRALQLA--AAGAIAIDDAANEILRSLPKLDE 246 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 L++ + A G L+ + + + I Q++ + Sbjct: 247 GALLAMADTFRGAEGAARFELL-------------MDRLADQVR-IFATQVAADGKNSLG 292 Query: 307 AAIELRMRE-------LARTIPPTDIQLYYQTLLIGRKELPYA 342 E A + +++ + R + A Sbjct: 293 LDRWAAAWERLSSWPGEAEAVNLDRADVFWSVISDLRAAVKTA 335 >UniRef50_B6AL71 DNA polymerase III n=2 Tax=Leptospirillum sp. Group II RepID=B6AL71_9BACT Length = 343 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 15/237 (6%) Query: 28 LANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 L L GR I YLF G RG+GK A L ++ L C C +C + ++ Sbjct: 18 LQRLLIAGRSVPIPATYLFHGPRGIGKKQAALLWSRLLLCTRPGHPDM-TACPSCAQFDK 76 Query: 85 GR-----FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 D+++I + +++TR LL + AP G + ++DE H+L+ + N Sbjct: 77 FSPENVHHPDILQISPGEGTSIPIDETRRLLSELSNAPLLGSRRTAILDEAHLLTESAAN 136 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 +LLKTLE+PPE +L T P L T+LSR + E++ LE + Sbjct: 137 SLLKTLEDPPEKTLIILVTPYPDNLLPTLLSRTVSVGFSGRTREEMEESLETFPGHNRMS 196 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + E L L +R A G L DAL + Q ++ GTL D +SL+ Sbjct: 197 SAEKNMLLLFSRGAPGQL-DALRNSPQWPLF--DKLPRALTQPQTGTLFDMDLISLL 250 >UniRef50_Q1YNM8 DNA polymerase III, delta prime subunit domain protein, putative n=2 Tax=Aurantimonadaceae RepID=Q1YNM8_MOBAS Length = 352 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 107/267 (40%), Gaps = 26/267 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE------TGITAT 71 + G LA+ + GR+HHA+LF G RGVGK + A A+ L Sbjct: 27 LFGHRREFAELASAEAAGRLHHAWLFQGPRGVGKATTAFAFARHLLSPAYAKGTEPPVFD 86 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKV 122 P R+I G + L+ + ++ VE R L Q +R +++ Sbjct: 87 PAD--PAMRQIALGTYPGLVHVTRPPVEKGTGFRTQITVEGVRKLNRFFQATGSRTSWRI 144 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID ++R + NALLK LEEPP FL+ P +L TI SRC + L Sbjct: 145 AIIDPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIRSRCRTLRFEPLGDHD 204 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ-AVSAML 241 + L AL L +EGS R A+SL IA G ++ Sbjct: 205 LAAATAAALPSAGKDEIAAALPL----SEGSARQAISL----IAYGGIEIRQSLQTLIAA 256 Query: 242 GTLDDDQALSLVEAMVEANGERVMALI 268 D + S+ +A+ + E+ + Sbjct: 257 DRPDWNSIHSMADALTQKGREQAYEFL 283 >UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925630 Length = 322 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 25/218 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP D++ + ++ + +S G++ H LF G G GKTS +AK L Sbjct: 126 KYRPACLDDLISHKDIIDTIQKFISEGKLPH-LLFYGPPGTGKTSTILAVAKQL------ 178 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR----GRFKVYL 124 + +E ++E++A+ + R+ + + +A R +FK+ + Sbjct: 179 --------YSPKEF----HSMVLELNASDDRGIGIVREQI--LGFASTRTVFKSKFKLVI 224 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + NAL + +E+ E+ +F L + I SRC +F LD +Q+ Sbjct: 225 LDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQVS 284 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 +L+H++ EE++ ++ L R +G +R +L++ Sbjct: 285 LRLKHVIQEENVTVTEDGMKSLIRLGKGDMRRSLNILQ 322 >UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit n=2 Tax=Bacteria RepID=C3JCU0_9PORP Length = 385 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 134/390 (34%), Gaps = 69/390 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFS---GTRGVGKTSIARLLAKGLNCETGIT 69 F D++G E + L + G I H LF G GVG +A + LNC Sbjct: 1 MQFRDIIGYESLKEELRRISATGHIPHNILFDIEDGMPGVG---LALAWIQYLNCSDPHH 57 Query: 70 ATPCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRD-------------- 106 CGVC +C+ + Q + D+ I + S + R+ Sbjct: 58 GDSCGVCPHCKMLSQLSYPDVHYIFPVVNATDVETPSDNFLSQWREMFAAEGAYFDHETW 117 Query: 107 --------------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 L + + A + G +++ +I E ++ + N LLK +EEP Sbjct: 118 LRYLNAGKQQPVIYSKDAIALENKLSIASSEGGYRMVIIYEPDRMNEAAANKLLKLMEEP 177 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P+ + ++L TILSR +F L L ++++ L + + R L Sbjct: 178 PDKTIIVSVCFATEQLLETILSRMQRFELLPLTQDELKMGLRQFYPQ----AQERDLLRA 233 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 A ++G L A + S + G L+ +V + + Sbjct: 234 ALRSDGILLRARQIL-------ANNTSIAKYTECFG--------QLIGDIVRKDVVALRK 278 Query: 267 LINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 L + + G EW A LV + A + L I P +I Sbjct: 279 LSEKMDSEGREWIVAALVYFEECFRLSFTGNFTGAGTQFSTDREQAIFIALNEVITPANI 338 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + Y+T + + +M + T LR Sbjct: 339 ESIYRTTESAIRHVRGNVSAKMVLFDTFLR 368 >UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EC47_9CHLO Length = 355 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 144/331 (43%), Gaps = 30/331 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP +DV + ++ + S R+ + L G G GKTS +AK L Sbjct: 31 QMWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPY-LLLYGPPGTGKTSTILAVAKEL- 88 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD---NVQYAPARGRF 120 G + ++ +E++A+ ++ R+ + + + F Sbjct: 89 --YGPQFS---------QMT-------LELNASDDRGIDVVRNEISAFASTMRFGSNAGF 130 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE +++ + AL + +E+ +H +F L K+ + SRC +F L Sbjct: 131 KLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGP 190 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ--AIASGDGQVSTQAVS 238 ++ +++ ++ +E++ A+ + R G +R L++ GDG + +V Sbjct: 191 NAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVY 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQL 297 A G + ++ ++ +N + +A + RG+ ++ ++ + R+ M QL Sbjct: 251 ATTGQPRPEDIEAIAGVLLNSNFKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQL 310 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + A L +DMA +E R+ + +QL Sbjct: 311 ARANLVSDMADVEYRL----AYVTHERLQLM 337 >UniRef50_A4CAL1 Putative DNA polymerase III delta' subunit n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CAL1_9GAMM Length = 302 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 2/162 (1%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA+ ++HHA L G +G+GK ++A LA L C T CG C +C + Sbjct: 11 QMLADASQNKKLHHALLLQGVQGIGKQTMAVHLAGALLCPNQQNLTACGQCKSCHLLAAQ 70 Query: 86 RFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D + + V++ R + D Q + + KV ++++ +++ + NALLKTLE Sbjct: 71 SHPDYLVLGHEQKTIGVDEVRKIADFCQTSAGQRGAKVVVVNDADLMTTAAANALLKTLE 130 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EP + +L + ++LP T+LSRC Q L +D Q+ Q Sbjct: 131 EPANNRFLILVSAQAERLPATVLSRCSQVTLS-VDDAQLVEQ 171 >UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NRQ8_CHRVO Length = 334 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 126/339 (37%), Gaps = 49/339 (14%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVDLI 91 R+ A+LF+G G+GK + A LA+ L CE+ PCG C CR G D Sbjct: 16 ERERMPGAWLFTGAAGIGKLAFAEHLAQSLLCESPAAGHQPCGQCQGCRWFHSGTHPDFR 75 Query: 92 EIDAAS----------------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + + + K+E R+++D R +V L++ L+ + Sbjct: 76 RLSPFADEEEEGKEAKTTRKLPQIKIEAVREVIDFAHLTAHRAGRRVILVEPAESLNLAA 135 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLK LEEPPE V FLL + PQ+L TI SRC QF L L+ Sbjct: 136 ANALLKILEEPPEAVLFLLVSHAPQRLLPTIRSRCRQFALTRPAESAALAWLK------- 188 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 E A A L D +A+ G Q V LG L L E Sbjct: 189 ---EQGVANAEAELAHNG-GAPLFDHDPELAALRG----QFVRG-LGQPSFAGMLQLAEL 239 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + ++L+ + + LH +A + L+ E + Sbjct: 240 I---DKNKQLSLLQPLSW-----------LQKWLHDLAALCLAG--RVRYYPDHERALAA 283 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 LA + Q L + + R+ +E L+ Sbjct: 284 LAPRCDAVQLMACQQALTALAPFSQHTLNARLQLEAVLM 322 >UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0APP2_MARMM Length = 349 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 115/301 (38%), Gaps = 35/301 (11%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGV 75 D+ G E A A GR+HHA++ +G RGVGK S+A A+ + A P G Sbjct: 23 DLFGHEAAERAFATAWDSGRLHHAWMITGPRGVGKASLAWRAARRVLGARPMPEAGPLGT 82 Query: 76 CDN---CREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ IE DL+ + VE+ R + + G ++V Sbjct: 83 SAEDPVCKVIEAQATPDLLVLRRPWDDKRKRWRGEITVEEARRAPHFFEMSSGGGGWRVC 142 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++D ++ ++ NALLKTLEEPP+ L T P +LP TI SRC + L+A D++ Sbjct: 143 IVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRLALRAPDIDAT 202 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-- 241 LE A +R A G+ AL+L G V A +L Sbjct: 203 AEWLEQTGGAADTGAAMAA----SRLAGGAPGRALALI------AGGGVELAADVNLLVD 252 Query: 242 --GTLDDDQALSLVEAMVEANGERVMALINEAAARGI--------EWEALLVEMLGLLHR 291 D L E + E + L E A I E L Sbjct: 253 RGAAASDADIRKLAERLSLKGQEEMRDLFYEVLANAIRLQARDRGEAGRDTTAWLDCWRN 312 Query: 292 I 292 I Sbjct: 313 I 313 >UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=Gammaproteobacteria RepID=Q2NU34_SODGM Length = 332 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 109/304 (35%), Gaps = 29/304 (9%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 97 HHA L G G+ + L++ L C + CGVC +CR + G D + + Sbjct: 24 HHALLLHSQPGNGEAPLCYALSRWLMCRQPDGSKSCGVCHSCRLMMAGNHPDFYQPEPEK 83 Query: 98 RT---KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 V++ R ++D+V +G KV + +L+ + NALLKTLEEPP FLL Sbjct: 84 GRQSLGVDNIRAIIDSVYGRARQGGVKVVWLPHAELLTEQAANALLKTLEEPPTDTYFLL 143 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 P +L T+ SRCL L L + + S Sbjct: 144 GCQTPSRLLPTLRSRCL---YWPLPAPDEALGLRWLRQA---GFDDPL----------SA 187 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AL L A + + + L +L EA V + ++ ++N + Sbjct: 188 CTALRLCANAPLAAEALLQPGRWQERLALC-----AALYEAHVSGDFLTLLPVLN-WYKK 241 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 +L LL Q A A + LA P + +Q L Sbjct: 242 DDGPLYW---LLSLLTDALKWQQGAQASL-VNADRAELVAALAARWPAGVLHAQWQLWLQ 297 Query: 335 GRKE 338 ++ Sbjct: 298 CLRQ 301 >UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYK9_9BACT Length = 216 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 7/209 (3%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + + GQ+ L L+ L+ G A L G GVGK + A L++ + C PCG Sbjct: 11 SSIRGQDRALARLSRILAGGLRSGAVLLWGPEGVGKRTTALALSRRILCAEPQEGAPCGR 70 Query: 76 CDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +CR D ++ ++ R+LL + ++ L+DEVH L+ Sbjct: 71 CLSCRTPLA-AHPDFHLLEPGETQSIGIDAVRELLRGTLESSLVSPVRIALLDEVHRLTP 129 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N+LLK+LEEP +++ F L + P +L T+LSR L+ L L + E Sbjct: 130 EASNSLLKSLEEPSDNLLFFLVSPSPDRLLPTLLSRLLKVRFLPLSDGD----LAAVARE 185 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTD 222 P A++ + GS L L D Sbjct: 186 RRPESPPEAIERALPLSGGSAGRLLGLVD 214 >UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCB5_RHOVA Length = 353 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 18/283 (6%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + G + G +HHA+L +G RG+GK S A A+ L G A Sbjct: 19 PRLADALFGHNEAEAMFLRSFNAGALHHAWLITGERGIGKASFAWRAARFLLSRDGEAAG 78 Query: 72 -----------PCGVCDNCREIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARG 118 P R+I G L E AS V++ R L + + G Sbjct: 79 SGRAPATSLDVPSSH-PTARQIAAGAHSSLFALEAGGASTIGVDEVRKLRAFLGLT-SPG 136 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ ++D + L+ S NALLK +EEPP+ F L + + TI SRC++ L+ L Sbjct: 137 GWRAMIVDPANDLTIASANALLKAVEEPPQRTVFFLVSHGAAAVLPTIRSRCIKLALRPL 196 Query: 179 DVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 D +E + E +Q L A GS AL+L + ++ + V Sbjct: 197 DTAPFACAVEAACARAGLDAPEAEQMQRLHALAGGSAGRALNLIGGGLLKLADKL--ERV 254 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 L D L+++ A A + + IE A Sbjct: 255 MDGLRRPDQAAVHDLIQSASGAKNADTFARLCDLIEERIEARA 297 >UniRef50_Q045U3 DNA replication ATPase n=8 Tax=Lactobacillus RepID=Q045U3_LACGA Length = 285 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 18/188 (9%) Query: 19 VGQEHVLTALANGLSLGRIHHAYLFSGT---RGVGKTSIARLLAKGLNCETGITATPCGV 75 VGQ+ L + ++ H+YLF +G+ + A LA NC P G Sbjct: 7 VGQKQ-TNLLRDAYLNKKVAHSYLFVDPMQKKGL---NTAYWLACLFNCL--GENKPDGT 60 Query: 76 CDNCREIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C+NC+ I G D+ + + ++ R L + + +P G+ + ++I+ L+ Sbjct: 61 CNNCQRILDGNHPDVFLVKLEGKQTLSIDQIRPLKEELAKSPVEGKRRFFIIENAEKLTL 120 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI----RHQLEH 189 + NALL LEEP V +L T + ++ T+ SR + E+I LE+ Sbjct: 121 AASNALLNLLEEPVAPVVTILITNNENQILPTVKSRTQILNF---SDEKIDSKRAQLLEY 177 Query: 190 ILNEEHIA 197 L +E I Sbjct: 178 GLTDEEIE 185 >UniRef50_A0NSR3 DNA polymerase III subunit delta' n=2 Tax=Rhodobacteraceae RepID=A0NSR3_9RHOB Length = 353 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 120/312 (38%), Gaps = 59/312 (18%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK----------- 60 P ++G AL R+HHA++ G +G+GK ++A A+ Sbjct: 22 PHERDRLIGHAKTEQALLEAYRSERLHHAWILGGPKGIGKATLAFRFARFVIANPDRFGP 81 Query: 61 --------GLNCETGITATPCGVCDNCREIEQGRFVDLIEI-----DAASRTK----VED 103 + + + R+++ G +++ + D + R K V++ Sbjct: 82 EVASARDLAVMQDHPVA----------RQLKAGGHPNVLHLRRPWDDKSKRFKADLPVDE 131 Query: 104 TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 R + + +++ ++D ++ S NALLK LEEPP+ FL+ + P +L Sbjct: 132 VRRTVSFFGTTASAKAWRICIVDAADDMNISSANALLKILEEPPQRCLFLVLSHAPGRLL 191 Query: 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 TI SRC + L L E++ L+ + L+ LA A+GSLR A++L Sbjct: 192 PTIRSRCRRLDLDPLTEEEVAQGLQDLSG--GSVASSDDLRELALTADGSLRSAITLLSG 249 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI--EWEAL 281 G L + + + V AL + AARG WE+ Sbjct: 250 D-----------------GLAIAKGVRQLADRPHQLDLAAVHALADLVAARGQSDNWESF 292 Query: 282 LVEMLGLLHRIA 293 M LH Sbjct: 293 QHIMQIWLHDRM 304 >UniRef50_Q7NKP5 DNA polymerase III delta prime subunit n=1 Tax=Gloeobacter violaceus RepID=Q7NKP5_GLOVI Length = 308 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 108/284 (38%), Gaps = 49/284 (17%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + V GQ + L + GRI AYLF G +GVGK AR A L E+ + Sbjct: 7 SSVKGQPLAMALLERAIVTGRIAPAYLFCGPQGVGKAMAARHFAARLL-ESALG------ 59 Query: 76 CDNCREIEQGRFVDLIEIDAASRTK------------------------VEDTRDLLDNV 111 IE+G DL+ ++ + +E R + + Sbjct: 60 -----RIERGNHPDLLWVEPTYKKGDKLLSRAEALAEGGNLPRALPQVRLEQVRGINQFL 114 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P +V +I+ + + NALLK LEEP F+L L T+ SRC Sbjct: 115 SRPPLEAARQVIVIEGAEAMGDGAANALLKILEEP-GGAVFVLIAPSAGGLLATVRSRCQ 173 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DG 230 + L E + L + + + +LLA A+GS AL L Q G Sbjct: 174 KVPFCCLPHELVAQILAAL----GKSVDE---RLLA-MAQGSPGRALEL--QTWLFGIPP 223 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAM-VEANGERVMALINEAAA 273 ++ +A LD AL+L + E N E+ + L++ Sbjct: 224 ELLAEAEKWAYRPLDLRSALTLARRIDAELNLEQQIPLVDYLQQ 267 >UniRef50_C9RIN8 AAA ATPase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIN8_FIBSS Length = 374 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 130/390 (33%), Gaps = 83/390 (21%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE + L L R + L G G+GK ++A +A+ L C + PCG C C+ Sbjct: 12 QERIRIRLMAALRENRFPQSILIDGPVGIGKKALAMEIAQALQCTN-PSVRPCGNCFGCK 70 Query: 81 --------------------------EIEQGRFV---------DLIEI----------DA 95 ++ G + EI A Sbjct: 71 MATDTGVTDNWVVPMEAKEASARNAADVSAGSSAKTIQDFKQAYIEEITKNPYRVDIFSA 130 Query: 96 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 + VE R + + R +V +I E ++ + NA LKTLEE P + F+L Sbjct: 131 GAVISVELIRTMTASFAMKG--DRVRVVIIAEADRMNDSAANAFLKTLEEVPPNTYFILT 188 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL-QLLARAAEGSL 214 T+ +KL TI SRCL HL L E++R + + EE + L + A GS Sbjct: 189 TSSREKLLQTIRSRCLALHLPPLTDEEVRQEAIRVGGEE---FDESTLTDDVIGLAVGSP 245 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AL + A V +E + + + + Sbjct: 246 GMALYYAEHAKNWSPLAV------------------DFIEKSLSQDYTDLFFKLE---DS 284 Query: 275 GIE----WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 G+E L + L+ + Q A A E + + ++ Sbjct: 285 GLEDPAIVNRFLEVLSFLITDLLRQQSG--APLRIPEATGSVNLERYPQVGASALEAALV 342 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + RRM +T L+ L+ Sbjct: 343 SVQETMSRI---ASRRMAA-VTCLQNLSLK 368 >UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteurellaceae RepID=B8F7F9_HAEPS Length = 329 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 114/342 (33%), Gaps = 34/342 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + + GR HHA LF G+G + R A L C T PCG C +C Sbjct: 11 HHQITSTFQ----QGRGHHALLFKTDSGLGTEQLIRHFAHWLLCHTPQQNQPCGQCKSCL 66 Query: 81 EIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + G D + ++ R++ +Q +G V + L+ + NA Sbjct: 67 LWQSGNHPDFHLLAPIDDKDIGIDQVREITAKLQQFAQQGGNAVVYLAGAERLTEAAANA 126 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEP ++V FLL + TI SRC + + + Q L+ + Sbjct: 127 LLKTLEEPNQNVYFLLEAPLQATMLATIQSRCQTWLVHTPESSQTFEWLQTECPTAQSSE 186 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV- 257 AL+L + + + L Sbjct: 187 IETALRLC---------------------HNRPLLCKTFLETDRLPSRKTFLQTFWRFYK 225 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + + ++ + + L + ++ A G ++ + + Sbjct: 226 SRDVFLLFSAFDKEPEQ---VQQQLEWLGSFFSDALKAKMQI-ATGWLNPDLQNGILPFS 281 Query: 318 RTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLRAL 357 + + + +Q + +++L A ++ + + L + + Sbjct: 282 QQLTAQGLLKGHQIIQQTQRDLREVNAVNQELMLLDCLSKLV 323 >UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGN9_9GAMM Length = 331 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 8/245 (3%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L + GR+ HA L GT G G+ +A LA+ L C CG C C G Sbjct: 27 LQAQCANGRLPHAMLLEGTPGTGRNRLALSLARYLLCGDMSAQGNCGSCKTCTLSASGAH 86 Query: 88 VDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 DL+ + A ++ R+++ P GR KV LI L++ +FNA LK LE Sbjct: 87 PDLLTVMPAETGKAIGIDAIREVIRFAAGTPTLGRSKVMLISPAESLTQAAFNAFLKCLE 146 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP ++ + LP TI SRC ++ L + +++ R L +E ++ + Sbjct: 147 EPSSETFIVMVSASGYPLPATIRSRCQRWKLPSPSLKESRAWL-----QEALSGDADGAA 201 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 + E S L ++ + G + + + L +A+ + + Sbjct: 202 SIDAMLELSGGRPLYALEKLHSDESGGLINLHSATRASLREGRPLPGLEQAVAKVQPDNA 261 Query: 265 MALIN 269 + ++ Sbjct: 262 LDVLE 266 >UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryota RepID=RFC2_HUMAN Length = 354 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 119/282 (42%), Gaps = 28/282 (9%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP ++VG E ++ L G + + + +G G GKT+ LA+ L Sbjct: 41 KYRPVKLNEIVGNEDTVSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARALLGPALK 99 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 123 A ++E++A++ ++ R+ + V +GR K+ Sbjct: 100 DA-------------------MLELNASNDRGIDVVRNKIKMFAQQKVTLP--KGRHKII 138 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + AL +T+E + +F LA K+ I SRC L QI Sbjct: 139 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQI 198 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L +++ +E + + L+ + A+G +R AL+ Q+ SG G ++++ V + Sbjct: 199 LTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL-QSTFSGFGFINSENVFKVCDE 257 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 +++ V AN + ++ G E ++ + Sbjct: 258 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNI 299 >UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggregatibacter aphrophilus NJ8700 RepID=C6APV7_AGGAN Length = 356 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 115/338 (34%), Gaps = 28/338 (8%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 97 HHA L G+G + LA+ L C T CG C +C ++ D I Sbjct: 25 HHALLLRADVGLGVAQLCEALAQRLMCLTPNGDEACGQCHSCHLMQANSHPDFQHIAPIE 84 Query: 98 R--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 ++ R + + + KV I++ H L+ + NA+LKTLEEP + F+L Sbjct: 85 NKDIGIDQIRAMNEQATQHAQQNGNKVIYIEQAHRLTEAAANAILKTLEEPRPNTYFILH 144 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA----- 210 L TI SRC ++L + E L+ L++L ++ Sbjct: 145 CDIQTALLPTIYSRCQVWNLLPPETEVALQWLQS-------QVSAETLEMLFASSPTRLL 197 Query: 211 --EGSLRDALSL--TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM----VEANGE 262 +G++ DA D A AML +Q + + Sbjct: 198 TPDGAIGDANVQNPLDFVTALRVNYGRPLLALAMLQQNQLEQRREFLRQFWVFYRRRSPL 257 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + + L +L L +L G IE + + A+ + Sbjct: 258 ELFPFFAKEKDM---ALQQLDWLLAFLSDALKAKL-QVKNGWICQDIERGVIQFAQGLSA 313 Query: 323 TDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLRALA 358 + + R +L A ++ + + L R + Sbjct: 314 PALLQAGNIVQKVRSDLQTINAVNQELILLDGLTRLIT 351 >UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=Polynucleobacter necessarius RepID=A4SXG7_POLSQ Length = 377 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 73/368 (19%), Positives = 130/368 (35%), Gaps = 52/368 (14%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIE 83 L L + L +A + G G+GK ++A LAK L CE+ PC C+ C Sbjct: 14 LQPLWDSLDFSNFPNALILHGQSGIGKFNLAVELAKALVCESTSSEHKPCNHCEACHWFS 73 Query: 84 QGRFVDLI------------------------------EIDAA-------SRTKVEDTRD 106 G D I ++D +E+TR Sbjct: 74 TGNHPDFIALVPETHRRLLPHAEYASDEPPKKGRAARDDLDGEASEKKEKKNISIEETRH 133 Query: 107 LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 ++++ RG +V LI + ML S N LLK+LEEPP + F+L ++ TI Sbjct: 134 AIESLSIGSHRGGNRVILIYPLEMLRHDSANTLLKSLEEPPANTIFILLADRVDRVLPTI 193 Query: 167 LSRCLQFHLKALDVEQIRHQLE-HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI 225 SRC D EQ L+ + N I + + G+ ++ D I Sbjct: 194 RSRCRLLTAPRPDREQGVAWLKSQLANLSDIKINDADIDTIYDEQGGAP---YAVLDSLI 250 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 A + + A+ + L+++M + + + + LL M Sbjct: 251 ARHNKDDKDELTIAI------QASRLLLQSMSQGGRMPWLETAEKIHKAQYSF--LLATM 302 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + + V + L++++ + +++ L+ R+ + Sbjct: 303 QRWVSDLQTVAQGGTPR--YYPKHLNTLNALSQSVRIAKLLQFWKALIQARRSENHPLAS 360 Query: 346 RMGVEMTL 353 R+ +E L Sbjct: 361 RIQLEALL 368 >UniRef50_B9TJX7 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJX7_RICCO Length = 342 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 121/350 (34%), Gaps = 36/350 (10%) Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q SP A+ +D + +LA + +QLYYQ ++G +++ APD G MTLLR Sbjct: 26 QYSPQAIADDHPE-RQTLLDLASQLTAEMLQLYYQICILGHRDIGLAPDAYAGFTMTLLR 84 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P +P T + +Q P Sbjct: 85 LLAFKADAMTPSAAPATGGSSPTEGTPRGNAGGNARAALAQSRQMSAASEPIPAIPATPM 144 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 T + K+ A A P A + + + +P ALE P + + Sbjct: 145 PPATPATPNVTASLKTAAALTPSAEPAPMMAPTVTPANHAVMADQAMP-ALEHIPQQAFS 203 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSLPK 534 P + + +A W A V LS Sbjct: 204 ------------------------------QPVVGSGESAPLAWDGNWRALVENHLSKLG 233 Query: 535 LVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 LV +A N D+ + L + + +HL + +KL ALS G ++L I+ Sbjct: 234 LVRALAQNCELVSYDDDTMTLRISEAHKHLASANYLEKLNSALSSHFGRRLKLNIITGQE 293 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E QA ++I+ D +Q L + A + SI+P+ Sbjct: 294 AN--TPARQLAVERAELQDQATQAIMDDRFVQGLMQEMGATIVPNSIKPL 341 >UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2D2_9GAMM Length = 308 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 12/256 (4%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVDLI 91 R+ HA L SG +G+GK + A L L C+ CG C +C+ + G D Sbjct: 3 QAQRMPHAILLSGIQGLGKRAFADTLIASLLCQQQTDQFEACGHCHSCQLLAAGSHSDHT 62 Query: 92 EIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 I + KV+ R+L + P K LI ++ ++N+LLK LEEP Sbjct: 63 LITPEDIGKQIKVDQIRELKASQTLMPKVSHGKTVLITHADQMNLSAYNSLLKLLEEPQP 122 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 + +L + + Q+LP+TI SRC + + + E+ LE H+ + Q L + Sbjct: 123 NSVLILISENSQQLPITIKSRCQKIVIATPNEEESLDWLEQQAPH----HDRKTWQSLLK 178 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A G+ AL + ++ + AV + + + + + VM I Sbjct: 179 LAHGAPLHALDNEEHSLIQSQTIIKDIAVL----MKGQANPVQMAANWQQFDLKSVMYQI 234 Query: 269 NEAAARGIEWEALLVE 284 IE L Sbjct: 235 QSMMQAKIESLLLADN 250 >UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FP94_PHATR Length = 350 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 128/302 (42%), Gaps = 43/302 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++RP++ +V Q V+ L N ++ GR+ H L G G GKTS+A L Sbjct: 16 RPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPH-LLLYGPPGSGKTSVALAL----- 69 Query: 64 CETGITATPCGVCDNCREIEQGRFVD-----LIEIDAASRTKVEDTRD-LLDNVQYAPAR 117 CR++ ++E++A+ + R+ + A+ Sbjct: 70 ---------------CRQLW---HPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAK 111 Query: 118 G----------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 G FK+ ++DE ++ + AL + +E + +F+L ++ + Sbjct: 112 GNNDMENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLA 171 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA-- 224 SRC +F ++L ++ +LE I NE++ E L + A+G +R A++ Sbjct: 172 SRCAKFRFQSLPPSSMKARLEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHS 231 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 +A+G +V A++ + G L A++ + + + ++ +A G + LL Sbjct: 232 LAAGGAKVDKAALAEIAGLPPPAIVDMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSA 291 Query: 285 ML 286 ++ Sbjct: 292 LV 293 >UniRef50_A7VYT2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYT2_9CLOT Length = 266 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 106/324 (32%), Gaps = 65/324 (20%) Query: 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 + HA + G ++A LA+ C G PCGVC +C + G D+ Sbjct: 4 HLSHAMILEGPDPEANLALAEKLAQQAVCTAGGR-RPCGVCRDCVKAAGGSHPDIAVYGG 62 Query: 96 ASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 ++ VE+ R + D+ P + KVY++D ++ + NALLK LEEPP +V F Sbjct: 63 KGGSRSFHVEEVRQIRDSAAVMPNEAQAKVYILDGADHMTEQAQNALLKVLEEPPSYVIF 122 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 LL L T+ SR F ++ E++ E LLA Sbjct: 123 LLTCGAASSLLPTVRSRAQIFRVQK---------------EDNPQTEESEAFLLAE---- 163 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 S+ A+ + VS D + Sbjct: 164 SMAKAVPSARE----------YDLVSKTGTLTKDKELF---------------------- 191 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 A+L E+ + + + A LA+ + + + + Sbjct: 192 ------RAVLKELALIFRDACALAAGGESQVTASQAAG----YLAQRLTRKKLMALLEAV 241 Query: 333 LIGRKELPYAPDRRMGVEMTLLRA 356 L + L ++ + + Sbjct: 242 LEAQAMLERNVNQTLLAAWMCAKL 265 >UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=Rhizobiales RepID=Q7CZ44_AGRT5 Length = 341 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 109/274 (39%), Gaps = 25/274 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-- 69 PQ + G E LA G+ HHA L G G+GK ++A A + Sbjct: 14 PQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLTHPDPASA 73 Query: 70 ----ATPCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPA 116 A P R+I G +L+ + S V++ R Sbjct: 74 PDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGHFFSQTSG 133 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G +++ +ID L+R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L Sbjct: 134 TGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLL 193 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST-- 234 L + L+ + I+ E L A++GS+ AL L + G + Sbjct: 194 PLSDAAMVQALDQL----DISPEGEKRDALLTASKGSVAQALKLMN----YGGSDIVEAF 245 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 V + G + L E + + +G+ V+ Sbjct: 246 AEVMSAEGPGARKRMHKLAEVLAQKDGDIVLGFF 279 >UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX73_9BACL Length = 278 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 19/257 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PCGVCDNCRE 81 V+ +L N L ++ HAYL G + K + C C C NC Sbjct: 9 VIKSLTNTLKTDKLSHAYLIVGEDSLYSDEFILSFVKAIFCLENKDKEFYSCENCKNCNS 68 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 I G +VD ++ + + K ++ + L ++ G+ K+Y I ++ ++ + N+LLK Sbjct: 69 INHGNYVDFYKLSSETSIKKDEIQTLKSDLSVKSFYGK-KIYWIKDIEKMTEQAANSLLK 127 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 LEEP + + +L+ + + TI+SRC Q L I + EHI E Sbjct: 128 FLEEPEDDIIAILSCKNISAILPTIISRCQQVKL--------------IGHSEHIEIEQN 173 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L+A E R I + S V L + S + + + Sbjct: 174 E-ELIAITNEYVKRYMRKPHLANIYLLEKLKSKDEVVEFFNYLSMKVSKSYSDEIAS-DV 231 Query: 262 ERVMALINEAAARGIEW 278 + + + + Sbjct: 232 VNISKVQEKILQAQADL 248 >UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KQW7_9GAMM Length = 321 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 15/233 (6%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 RI HA + G G G+ +A LA L C A CG CD CR+ G D Sbjct: 28 EQDRIPHALMLVGAPGTGRRQLAWSLAAMLLCSRPSVAGGCGTCDVCRQFMSGAHGDSRW 87 Query: 93 IDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 ++ ++ R + +Q A G KV +I ++ + NALLKTLEEP Sbjct: 88 LEPEPEKRAIGIDQVRGAVQFLQQTAAYGGRKVLVIAPADAMTSAAANALLKTLEEPAGD 147 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---------AHEP 200 LL + ++LP T+ SRC + L EQ L+ ++ Sbjct: 148 SVMLLVSDYGERLPATVRSRCQRRVLSHPSREQGLTWLKSVVEPAGDYSAVLDLVQDCPL 207 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 A +L+ + + LSL + DG+V+ S++LG + +AL L+ Sbjct: 208 EARRLI---NDDEVDGFLSLQESIRGLLDGKVAATVASSLLGRAEPGRALRLI 257 >UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_9MOLU Length = 313 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 63/341 (18%), Positives = 128/341 (37%), Gaps = 41/341 (12%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL-LAKGLNCETGITATPCGVCDNC 79 Q + N S RI HA+L G T+I LA L C+ + C C++C Sbjct: 9 QPIFYNLIKNEFSQQRIPHAFLLIGNN----TNIPLTYLAMSLICDETL---ACENCNDC 61 Query: 80 REIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 R++++ ++ D+I + K + + D + + G+ K+Y+I+ + ++ + N Sbjct: 62 RKVKENKYSDIIRFNGKDNSIKKGNIELIQDTFKKSSLEGKAKIYIIENIEYATKEAMNT 121 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP E + + + ++ TILSRC +K E I L Sbjct: 122 LLKMLEEPTEGIYAIFTANNASRVLPTILSRCQVIDIKPDSKEVIIGALCQ------DGI 175 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + +LA A S+ +A +L D+ QV ++ +E + Sbjct: 176 TKESAHILAYLAP-SIEEAKTLYDERFEYMQLQV-----------------INFIEDLFL 217 Query: 259 ANGERVMALINEA---AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++ + + L ++ + + V+ + + +R Sbjct: 218 KRANLIINTQTNLLKKYKERDDIKLFLNMLVLAMKDMFHVKHTDD---IVYCEHQEFLRN 274 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + I + + + +L + + M ++ + R Sbjct: 275 I--KIDESQLIKQIEIILETIYTIESNANVPMLMDSMMYRL 313 >UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BIX6_9BACT Length = 367 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 130/385 (33%), Gaps = 64/385 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-----CETG 67 + +++GQE + L + + ++ HA LF+G G G I+ + L C +G Sbjct: 1 MIWKNIIGQEDIKKQLEHLIDSNQVPHAQLFTGLSGYGGLPISLAFSLALLGISSECSSG 60 Query: 68 ITATPCGV-----------------------CD----NCREIEQ----GRFVD----LIE 92 P G C G + D ++E Sbjct: 61 ---KPLGEKIHHPDFHFVYPVVKRGTEKVAYCSDYSSEWTAFLSESLYGNYNDWFEAIVE 117 Query: 93 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 + V++ L + G KV +I +++ + N LK LEEPP++ F Sbjct: 118 GNKQGLIGVKEIEKLHQKMHLKSYSGGNKVCVIWGTERMNKVASNKFLKILEEPPQNTYF 177 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 +L D + L T++SRC ++ + + + L + + + L AEG Sbjct: 178 ILIAEDIEMLLPTLVSRCQLVNIPPITNKVLEASLSS-------EIKDK--KSLVTQAEG 228 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 R + + L A + + + + ++M + + Sbjct: 229 DYRRLQRIVQN---------TNNKEFEALLIAGLRVAFKVKKDV--NSIVKLMEWTGKLS 277 Query: 273 ARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 G E + A L + ++ S L + + + ++A I +IQ Sbjct: 278 QIGKEEQKAFLNYGVQFFRDAFLINYSLHKLVHYQTENDFDIEKIAPFITSNNIQDLISL 337 Query: 332 LLIGRKELPYAPDRRMGVEMTLLRA 356 I ++ + +M + ++ Sbjct: 338 FEISHYQILRNANAKMVFDNLGIQL 362 >UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepID=A9A308_NITMS Length = 316 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 130/335 (38%), Gaps = 34/335 (10%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 K+RP ++VV Q ++ +L + + H LFSG+ GVGKT+ A C + Sbjct: 10 KYRPMKLSEVVNQTEIIGSLEALIKDPTDMPH-LLFSGSAGVGKTTTA-------LCIS- 60 Query: 68 ITATPCGVCDNCREIEQGRFVDL-IEIDAASRTKVEDTRD-LLDNVQYAPARG-RFKVYL 124 R+I D +E++A+ + R+ + +YA FK+ + Sbjct: 61 ------------RQILGDYAKDYTLELNASDERGIGMVREKVKKFSRYAGMADVPFKIII 108 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + AL + +E+ + +F+L + K+ I SRC F A+ E + Sbjct: 109 LDEADEMTSDAQTALRRIIEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVPEEDVI 168 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +LE I +E + + + L+ + +EG LR A++L + G +S V A G Sbjct: 169 KRLEEIAKKEKVKADKKGLKAIYDYSEGDLRHAINLMQATASLGS--ISEDNVKASAGLT 226 Query: 245 DDDQALSLVEAMVEANGERVMA-LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +++ + +I G+ L + A+ + L Sbjct: 227 KTTDVDEVLKIALSGKVPEAREKMIELIKVYGMSESDFLKYL-----NSAVFKSKHDKLS 281 Query: 304 NDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRK 337 + + I R L + + L Sbjct: 282 DILEIIAKYDYRILVGSNSEIQLSAMLAELAKVEN 316 >UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VE93_MONBE Length = 331 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 133/337 (39%), Gaps = 51/337 (15%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP + ++ ++ + ++ R+ H L G G GKTS + AK L Sbjct: 27 KYRPSSLDQLISHTEIINTIQRFINEDRLPH-LLLYGPPGTGKTSTIKACAKQL------ 79 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 +G ++E+ FK+ ++DE Sbjct: 80 -------------YGKGYKRMVLEV--------------------RLVTSGFKLVILDEA 106 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 +S + AL + +E+ +H +F L K+ + SRC +F L ++++ Q++ Sbjct: 107 DAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDELKSQVQ 166 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTD---------QAIASGDGQVSTQAVSA 239 ++ E++ P + L R A+G +R AL++ + A G + +AV Sbjct: 167 RVIKAENLTVTPEGIDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGDIDARAVYT 226 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLS 298 T D S+V M+E LI+E +G+ + +L E+ +H I Sbjct: 227 CTATPQPDDIQSIVSWMLEKPVAEAYKLISEVKTEQGLALQDILKEVHRFMHNIDFPTDC 286 Query: 299 PAALGNDMAAIELRMRELA-RTIPPTDIQLYYQTLLI 334 L A IE R+ + A ++ +D+ +Q + Sbjct: 287 KILLLERFADIEHRLADGATESLQLSDMIATFQRVRE 323 >UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukaryota RepID=A2QER5_ASPNC Length = 388 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 137/369 (37%), Gaps = 66/369 (17%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 RP+T DV Q+H L L + H LF G G GKTS LAK L + + Sbjct: 41 RPKTLDDVAAQDHTTKVLQRTLQASNLPH-MLFYGPPGTGKTSTILALAKSLFGPSLYRS 99 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG------------ 118 ++E++A+ + R+ + N A Sbjct: 100 R------------------ILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQY 141 Query: 119 ---RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 FK+ ++DE +++ + +AL +T+E+ +F L ++ + SRC +F Sbjct: 142 PCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRF 201 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-------- 227 KALD +LEHI E++ E + L +EG +R A++ A Sbjct: 202 KALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGRAGK 261 Query: 228 ------------GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG----ERVMALINEA 271 ++ + + + G + + +LV+AM E V ++ + Sbjct: 262 KDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVVTDI 321 Query: 272 AARGIEWEALLVEMLGLLHRIAMVQLSPAALGN----DMAAIELRMRELA-RTIPPTDIQ 326 A G L +L L R+ P N + ++ R+ + A + D+ Sbjct: 322 IADGWSATQL---LLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVA 378 Query: 327 LYYQTLLIG 335 L +L G Sbjct: 379 LKISGILGG 387 >UniRef50_C8WFU3 DNA-directed DNA polymerase n=4 Tax=Sphingomonadaceae RepID=C8WFU3_ZYMMN Length = 330 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 92/243 (37%), Gaps = 34/243 (13%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS-----IARLLAKGLN------- 63 + ++G + + A + GR+HHA+L +G +G+GK A LLA +N Sbjct: 2 SQLLGHDTAIKAFRHAEDSGRLHHAWLLTGAKGLGKRLFADRAAAWLLANAVNPDIRKNT 61 Query: 64 ---CETGITATPCGVCDNCREIEQGRFVDLI----------EIDAASRTKVEDTRDLLDN 110 P I+ G DL+ E + A V+ R + Sbjct: 62 ASDSLDIPEGNPTLS-----LIKAGSHPDLLRLERLFRDSKEQERARNITVDQVRTIQKL 116 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 PA +V +ID + L R + NALLK LEEPP F L + +L TI SRC Sbjct: 117 FATTPALSFRRVVIIDSIDDLERSAANALLKNLEEPPAGTIFFLISHAAGRLLPTIRSRC 176 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+ + L H L L L + ++G+ L +A D Sbjct: 177 RILSFHLLEDNLVAQILRHHLP----DITAEELASLVKISQGAAGYGLRFAGLDMAELDN 232 Query: 231 QVS 233 + Sbjct: 233 AIE 235 >UniRef50_Q8DLH4 DNA polymerase III delta prime subunit n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DLH4_THEEB Length = 311 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 65/366 (17%), Positives = 116/366 (31%), Gaps = 85/366 (23%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F V+GQ + L L +I AYLF G GVG+ AR + + E Sbjct: 4 FRPVIGQPTAIQLLTYALDRRQIAPAYLFVGPEGVGRALTARCFLQAILNEAK------- 56 Query: 75 VCDNCREIEQGRFVDLIEIDA------------------------ASRTKVEDTRDLLDN 110 + D++ ++ A + ++E R L + Sbjct: 57 --------DLSNHPDVLWMEPTYSVQGTLYTRRQLLAADKEIPRSAPQIRLEQIRQLSRH 108 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + P R + ++ + ++ + NALLKTLEEP +L P L TI+SRC Sbjct: 109 LSQPPMRAPRSLVVLTQAETMNEAAANALLKTLEEP-GRATLILIAPSPSALLNTIVSRC 167 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 + L + + L + + L GS L QA Sbjct: 168 QKIPFYPLSRQAVEQVLRQVAPP---DFWHQVTPALLDLGAGSPGAIL----QAWQ---- 216 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 + Q + L + L + + L + + L + Sbjct: 217 --TWQEIPEAFRHLGEQLTAPL-------PLQTALELARDISQS-----------LDVER 256 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ ++ L +++ + L Q L R+ L R+ E Sbjct: 257 QLWLLSLMQ--------------QQIWQKRDLPRCVLVLQQLERARQYLQQYVQPRLVWE 302 Query: 351 MTLLRA 356 + L++ Sbjct: 303 VLLMQL 308 >UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=Sphingopyxis alaskensis RepID=Q1GTQ0_SPHAL Length = 326 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------T 71 ++G + A +G GR+HHA+L +G +G+GK A A+ L Sbjct: 1 MIGHQEAEKAFLDGWQGGRLHHAWLLAGPQGMGKGDFAERAARFLVTHGAGGGRAAVALD 60 Query: 72 PCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G R ++ G ++I + + A ++ R ++ + + + G ++V Sbjct: 61 DRGDDAAARLVDAGNHPEIIRLTRQPKDKTKELARNITIDQVRQVIRRLHLSLSLGDWRV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D V L NALLKTLEEPP FLL + P +L TI SRC + +D + Sbjct: 121 IIVDAVDDLESDGANALLKTLEEPPARTLFLLVSHSPGRLLPTIRSRCRILRFQPIDRDV 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-------------GD 229 + L + + ++ + A+ G AL+L D +AS + Sbjct: 181 MVSWLHDLRPM----LDMPEVRAIVAASGGVPGKALALIDSDVASMQKKLLAIAASGDPE 236 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVE 254 ++ + G + + +++ Sbjct: 237 NRLREALAREVGGASNRARLELVID 261 >UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MJX8_9FIRM Length = 318 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 108/276 (39%), Gaps = 22/276 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G++ LA R+ H + +G +G+GK + A+ A C PCG C Sbjct: 13 LFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRCR 72 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +CR I G D+I +K E RD + P +V++ ++ ++ N Sbjct: 73 SCRNIISGEHADVIYAKGEKYSK-ESVRDNVCFASTLPNDSDTRVFIYEDCEEMTEEQQN 131 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK +EEP ++ +++ ++ ++ TI SR + + + E+ LE+ Sbjct: 132 VLLKAIEEPSKYNRYIFTCSNTSQILETIKSRLVCIPISDMTAEECVSCLEYN------G 185 Query: 198 HEPRALQLLARAAE---GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD-DQALSLV 253 ++ + G +RD LS + + + V+ L D+ A+++ Sbjct: 186 YDSDTAKRAVELYGTNPGRIRDILSDEKRIKLYD----TAKKVTEALSKKDEYSAAVAMT 241 Query: 254 EAMVEANGERVMALINE-------AAARGIEWEALL 282 + V+ ++ E G E L Sbjct: 242 ACTTREDLYGVITILYENVTESLRVLETGGEPLLCL 277 >UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MDV0_9PORP Length = 362 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 136/388 (35%), Gaps = 74/388 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G + + A+ G++ HA L G +A A+ + C++ Sbjct: 1 MQFADIYGYQALKQQFAHLTHSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSPTDEDS 60 Query: 73 CGVCDNCREIEQGRFVDLI--------------------------------------EID 94 CG C +C+++ D+I E+ Sbjct: 61 CGACASCKKVAAIAHPDVIFVYPVVKAAQDETPTERYFDEWRTFLERSPYITDQDWLEVL 120 Query: 95 AASR----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 A V + LL + G ++ +I + ++ + N LLK+LEEPP Sbjct: 121 EAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEPPAET 180 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L + +L TILSR +F L + ++R L + H AL+ + Sbjct: 181 LFILVSAHSDRLLDTILSRVQRFELPPMTEAEMREALTAM----HPELATDALEAMIPLV 236 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 +G+L DAL L D + + Q Q D + L E + +A E +A + Sbjct: 237 DGNLSDALRLLDSSASQDKLQELAQQWYDATLRADILRLKLLSEEVDKAGREGAVAFLKL 296 Query: 271 AAAR-GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 + G +W L E R+ EL + + Y Sbjct: 297 LMQQVGQQWHRALRG-------------------------EARVGEL--RVNNKAMGACY 329 Query: 330 QTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L +E+ +M + T LR L Sbjct: 330 RLLEEAMREIRGNVLTKMVLFDTFLRML 357 >UniRef50_Q1H170 DNA polymerase III, delta prime subunit n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H170_METFK Length = 334 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 106/301 (35%), Gaps = 42/301 (13%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQ 84 L R HHA L G +G+GK + A LA + C++ CG C +C Q Sbjct: 14 QRLQRS--SERRHHALLLKGKQGIGKLAFASTLANAMLCQSPSADGYACGHCISCGWFVQ 71 Query: 85 GRFVDLI----------EIDAASR--------TKVEDTRDLLDNVQYAPARGR-FKVYLI 125 D E AAS+ V R+L ++ + + +V +I Sbjct: 72 NSHPDYRLLSPEQEDIPETPAASKKPVRKSTQISVTQIRELAGFLELSSHQSHGMRVVVI 131 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 L++ S NALLK LEEPP V F+L T+ PQ L TI+SRC Q + ++ Sbjct: 132 HPADALNQTSANALLKMLEEPPADVMFILVTSHPQSLLPTIMSRCQQLEMPVPSEQEALA 191 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L ++ I A LA + GS A + Q V A L Sbjct: 192 WL----EQQGIG---EARYWLA-YSGGSPLSAAE-------AAVNNAQVQLVPARLAQGR 236 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG--LLHRIAMVQLSPAALG 303 S E + + A+ + L IA +Q + Sbjct: 237 KLDPFSAAGEFASIGMEAAATAFQKWL---YDLVAVTLNTAARYHLRDIAALQSLGKKVD 293 Query: 304 N 304 Sbjct: 294 L 294 >UniRef50_C8V679 Subunit of heteropentameric Replication factor (Eurofung) n=18 Tax=Saccharomyceta RepID=C8V679_EMENI Length = 398 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 63/340 (18%), Positives = 132/340 (38%), Gaps = 54/340 (15%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP T DV G + +L + + ++ H L G G GKTS +LA Sbjct: 50 KYRPNTLDDVSGHKDILATINRFVEANQLPH-LLLYGPPGTGKTST--ILALA------- 99 Query: 69 TATPCGVCDNCREIEQGRFVD--LIEIDAASRTKVEDTRDLLDNV-------QYAPA--- 116 R I + + ++E++A+ ++ R+ + AP+ Sbjct: 100 -----------RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATG 148 Query: 117 ---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FK+ ++DE ++ + AL + +E+ + +F + KL +LSRC +F Sbjct: 149 KSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRF 208 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 L + IR ++ ++ +E + +P A+ L + G +R AL++ AS Sbjct: 209 RFSPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPI 268 Query: 230 ------------GQVSTQAVSAMLGTLDDDQALSLVEAMVE-ANGERVMALINEA-AARG 275 ++ + + + +V ++ ++ + +N +G Sbjct: 269 KNAPQDQAVPEPETITNETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKINKG 328 Query: 276 IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + +L + L+R+ + + +A IE R+ Sbjct: 329 LALADILSALGEQLYRLEVPAQTRITWLEGLAEIEWRLSA 368 >UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepID=Q0C927_ASPTN Length = 398 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 64/339 (18%), Positives = 131/339 (38%), Gaps = 55/339 (16%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP T DV G + +L + + R+ H L G G GKTS +LA Sbjct: 49 KYRPNTLDDVSGHQDILATINRFIEANRLPH-LLLYGPPGTGKTST--ILALA------- 98 Query: 69 TATPCGVCDNCREIEQGRFVD--LIEIDAASRTKVEDTRDLLDNVQ-------------- 112 R+I + + ++E++A+ ++ R+ + Sbjct: 99 -----------RKIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGS 147 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + + FK+ ++DE ++ + AL + +E + +F + KL +LSRC + Sbjct: 148 GSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTR 207 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----- 227 F L IR ++ ++ +E I +P A+ L ++G +R AL++ AS Sbjct: 208 FRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSIPLP 267 Query: 228 -----------GDGQVSTQAVSAMLGTLDDDQALSLVEAMV-EANGERVMALINEA-AAR 274 ++ + + + ++ ++ ++ + IN A + Sbjct: 268 MKNAPKDQVRPEAEVITNETIYDCIAAPYPADIQEIMTTLLTTSDITSCLNTINTLKANK 327 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 G+ +L + L R+ + + +A IE R+ Sbjct: 328 GLALADILEALADQLQRLEVPPQTRITWLEGLAEIEWRL 366 >UniRef50_C6XJM3 DNA polymerase III subunit delta' n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJM3_HIRBI Length = 325 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 14/215 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 +F V+G + + L GR+HH ++F+G RG+GK A A L T Sbjct: 8 SFGPVIGHDDAQAEILEALRSGRMHHGWMFTGPRGIGKFRTAMQFAAALLSGETGTLDID 67 Query: 74 GVCDNCREIEQGRFVDLIEI-----DAASR---TKVEDTRDLLDNVQYAPARGRFKVYLI 125 + DL + D + V RDL+ PA G +++ +I Sbjct: 68 EANHTAHLMLNNSHPDLRIVQRPFDDKGKQKAEIPVASIRDLIKFFSLRPAMGGWRIAII 127 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D + ++R+ NALLKTLEEPP +L ++ TI SRC L + Sbjct: 128 DALDEMNRNGENALLKTLEEPPAQCLIILIVHGEAQVLPTIKSRCRNLRFNPLSEAEGVT 187 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL 220 L + E A L+ A G A+ L Sbjct: 188 ALVNTGM-----LEADAKDTLS-YAPGRPGIAMKL 216 >UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured archaeon GZfos31B6 RepID=Q64AI6_9ARCH Length = 416 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 110/307 (35%), Gaps = 30/307 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + K+RP TF D+VG EH++ L + + + H + G + GK S +LA+ Sbjct: 72 MEQVIWTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPH-LVLYGAKNTGKMSAVFVLAR 130 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVD----LIEIDA--ASRTKVEDTRDLLDNVQ-- 112 L E + F D + D A +D + + V Sbjct: 131 ALYGEQWENNLA--------IFDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQKTVISV 182 Query: 113 ----------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 A F++ ID LS + +AL + +E+ +F+L+TT +L Sbjct: 183 FKQVINEYAGMAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRL 242 Query: 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 + SR L + + I E +Q + A+G L A+ + Sbjct: 243 IPALRSRGLNLFFDRASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVL- 301 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA--ARGIEWEA 280 Q + +++ V + + L L+ A + + + I++ G + Sbjct: 302 QIASMKRREITANTVYEVDLERIPEGILELLHASLAGDFKTARKRIDDLLMEESGADITH 361 Query: 281 LLVEMLG 287 L ++ Sbjct: 362 RLRRVIE 368 >UniRef50_B1CBF2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBF2_9FIRM Length = 289 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 113/293 (38%), Gaps = 52/293 (17%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVG-----KTSIARLLAKGLNCETGITATPCGVCDNC 79 L N + + HAYLF G G KT + K L C+ C C+ C Sbjct: 10 KNILLNHIDKDTMSHAYLFYGA---GEDVLDKTIL--EFLKTLYCKNSKYY--CDECEEC 62 Query: 80 REIEQGRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +I +D+ I D+AS K++ RD+ + + + ++ +++I ++ S N Sbjct: 63 IKINTNNNIDITHIYKDSAS-IKIKQIRDMQYKISLSSSEYKYNIFVIHNADTMTIESSN 121 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK------ALDVEQ---IRHQLE 188 A LKTLEEP + +L++ + L TILSRC+ + +L E+ I L Sbjct: 122 AFLKTLEEPVKDTIIILSSPSKEILLPTILSRCIHIKVNDNKVTLSLSDEEKNYIFESLS 181 Query: 189 HILNEEHI--------------AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 +IL ++ E L + + D L + + S+ Sbjct: 182 NILKGNNLNNVNISKKLTKDKNKVENYTL-FIMKF----FSDVLIYKESNLDMTFNDKSS 236 Query: 235 ---QAVSAMLGTLDDDQALSLVEAMV------EANGERVMALINEAAARGIEW 278 + + + + D+ +++ ++ N +A ++ G + Sbjct: 237 DYMEYIKQVNNLVTKDKLQKIIDKILYINEMINYNANASLAFLDLFIYIGEDI 289 >UniRef50_A5GP04 DNA polymerase III delta prime subunit n=13 Tax=cellular organisms RepID=A5GP04_SYNPW Length = 324 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 71/373 (19%), Positives = 122/373 (32%), Gaps = 79/373 (21%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 FAD+ GQ L + L+ R+ AYLFSG GVG+ A +G+ TG P Sbjct: 6 FADLQGQPLATQVLQSALTHQRLAPAYLFSGPDGVGRRLGALRFMEGVL--TGGGPDP-- 61 Query: 75 VCDNCREIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDNV 111 R +E+ DL+ ++ + ++E RDL + Sbjct: 62 --RERRRLEERNHPDLLWVEPTYSHQGRLISRSEAEAAGVNRRTPPQVRLEQIRDLGRFL 119 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P + ++++ ++ + NALLKTLEEP H +L + P +L TI SRC Sbjct: 120 ARQPLESPRGLVVLEQPEAMAEGAANALLKTLEEP-GHGLLILLSAAPDRLLTTIRSRCQ 178 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRAL--QLLARAAEGSLRDALSLTDQAIASGD 229 Q L ++ L + A L A GS +L + G Sbjct: 179 QIRFTRLPDAAMQTVLAQLPEAAGHQALEVAAAEPELVALASGSPG---ALIEHVRVWGT 235 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + L +L + + + + ++ Sbjct: 236 IP---EGLRERLKHPPQTPLDALA---LARDVCEQLEGEQQLW------------LISWW 277 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + R+ +P + R++L R+ Sbjct: 278 QTVLW-------------------RQQLDRVPVERLNRL-------RQQLLSFVQPRLAW 311 Query: 350 EMTLLRALAFHPR 362 E+TLL ++ Sbjct: 312 EVTLLNLISVQSS 324 >UniRef50_Q2RTP3 DNA polymerase III, delta prime subunit n=2 Tax=Rhodospirillaceae RepID=Q2RTP3_RHORT Length = 374 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 41/240 (17%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK----------- 60 P+ AD++G E + + GR HA+L SG RG+GK ++A A+ Sbjct: 15 PRLTADLLGHEAAEREILETCASGRAAHAWLISGPRGIGKATLAFRFARFALAGGLEGGE 74 Query: 61 ---------GLNCETGITATPCGVCDNCREIEQGRFVDLIEID-------AASRTK---V 101 R + G DL I+ R + Sbjct: 75 GGLFGALAPASLAMDPAHPVF-------RRVAAGSHGDLRVIERGLAEGTGGRRRGEIVI 127 Query: 102 EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 D RDL ++ P+ G ++V ++D ++R++ NALLK LEEPP LL + +P + Sbjct: 128 GDVRDLGGFMRMTPSEGGWRVVIVDGAEDMNRNAANALLKGLEEPPGRALLLLVSHNPAR 187 Query: 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 L TI SRC + L+ L+ + +E L L AEGS+ A+ L Sbjct: 188 LLPTIRSRCRRLALRPLEPAVLATLIERSLP----ELAETERPGLIGLAEGSIGRAMDLA 243 >UniRef50_A3UCJ6 DNA polymerase III, delta prime subunit n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCJ6_9RHOB Length = 346 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 21/239 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ET 66 P+ D+ GQ+ L +S GR+HHA++ SG +GVGK S A LA+ L E Sbjct: 18 PRRVYDLFGQDAALNEAEAAISSGRMHHAWMVSGPKGVGKASFAYRLARRLLGARATDEA 77 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPAR 117 G+ + P CR +E D + I VE+ R + + + Sbjct: 78 GLASDPDD--PVCRRLEALSHPDFLLIRRPYNDKTGKLKGEIPVEEARRAPEFFSKSASG 135 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++V ++D L+ +S NALLKTLEEPP+ +L P +L TI SRC + L+A Sbjct: 136 KGWRVCIVDSADELNVNSANALLKTLEEPPQRGLLILIVNTPGRLLPTIRSRCRRLILRA 195 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +E L Q A A+G+ AL+L + + + T Sbjct: 196 PSIEATTQWLMD-----RHQMSADEAQRAAMLAQGAPGRALALAETDAPALMATIDTAL 249 >UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication factor C subunit 4 n=2 Tax=Coelomata RepID=B4DM41_HUMAN Length = 303 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 33/261 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELF 101 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------R 119 ++E++A+ ++ R+ + N G Sbjct: 102 RLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F K L Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVS 238 + + +L I +E++ + L + +EG LR A++ A +G +++ + ++ Sbjct: 204 DKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263 Query: 239 AMLGTLDDDQALSLVEAMVEA 259 + G + L ++ + Sbjct: 264 DIAGV----RVLDILNFFLVG 280 >UniRef50_Q2JV00 DNA polymerase III, delta' subunit n=2 Tax=Synechococcus RepID=Q2JV00_SYNJA Length = 337 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 44/306 (14%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VGQE L L GR+ +Y F G GVG++ +AR A+ L CE + PCG C Sbjct: 13 IVGQELAARLLVAALEKGRVTSSYCFLGPEGVGRSLMARWFAQALFCEAS-SGIPCGQCS 71 Query: 78 NCREIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDNVQYA 114 NCR + G DL + + ++E ++++ Sbjct: 72 NCRWLLAGTHPDLHWVSPTYVHQGRLIAADAPEAQALQRRSPPQIRLEQVQEVVRFCARR 131 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFL----LATTDPQKLPVTILSR 169 P R + +++ L+ + NALLKTLEEP P H+ + T P LP T+LSR Sbjct: 132 PMHARRSLVVLEGAETLTESAANALLKTLEEPEPAHIVLIASHHSPTPPPHPLPPTLLSR 191 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL----------- 218 C + L ++ L + E +L+A A+GS AL Sbjct: 192 CQMVPFRRLSSAEMEQVLTALGCPELPGIPRS--ELIA-LAQGSPGRALAAQQHLQSLPP 248 Query: 219 SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIE 277 SL V+ + LD L L++ + + + I + + Sbjct: 249 SLLQDLRRWPHSLRQALEVARAVAALDLPAQLWLIDYLQQQFWAQGSRQAIRQLEQIRQQ 308 Query: 278 WEALLV 283 + Sbjct: 309 LLQFVQ 314 >UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q8IKK4_PLAF7 Length = 344 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 126/344 (36%), Gaps = 40/344 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP D++ E V++ + + G + H L G G GKTS +LA Sbjct: 18 KYRPNVLNDIISHEQVISTIKRFVQKGELPH-LLLHGPPGTGKTST--ILA--------- 65 Query: 69 TATPCGVCDNCREI-EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF------- 120 C+E+ R ++E++A+ + RD + +A ++ + Sbjct: 66 ---------VCKELYGDKRSSFVLELNASDDRGINVIRDQIKT--FAESKNHYTTCEKTT 114 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ ++DE ++ + NA+ + +E ++V+F L K+ I SRC F L Sbjct: 115 LKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLK 174 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAV 237 E ++++ I E++ + L R G +R L+ Q ++ + + Sbjct: 175 KEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCL-QVVSLSHKNLVIDENVI 233 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQ 296 + L + ++E + + + ++ +G + + M+ L + Sbjct: 234 LSTLDIPLPSETKKILEYFTKGSIKESYEFVSNLQYDKGYSTKDI---MMCLYESVLTYD 290 Query: 297 LSPAALGNDMAAIELRMRELARTIPPT-DIQLYYQTLLIGRKEL 339 +A + + + + R EL Sbjct: 291 FPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTEL 334 >UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinomonas sp. MED121 RepID=A3YHR7_9GAMM Length = 322 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 7/174 (4%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 + + HA L G G G+ +A +A + C+ + CG C +CR G D Sbjct: 25 ANQALSHALLLMGKDGGGQHLLATQIAYDILCDQKQLNSACGECHSCRLNHAGTHPDYHL 84 Query: 93 IDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 +D KV+ R ++ V +P KV ++ + ++ ++ NA+LK LEEPP Sbjct: 85 LDGQEGTIKVDQIRQIITKVATSPQVSHAKVVILAQAASMNINAANAVLKALEEPPSGTY 144 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 F+L +L T+ SRCL +L QI + E + Sbjct: 145 FILTADASSQLIATVRSRCLLINLPEPSSAQIEEWFS------GLDLEDDVADI 192 >UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 Tax=Acetobacter pasteurianus RepID=C7JGT4_ACEP3 Length = 314 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 24/253 (9%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + G + L A + GR+ HA+L +G G+GK + A LA+ L +P G Sbjct: 10 QLRGHQAALQAFRQAMQGGRLPHAWLITGPPGIGKATFAFRLARILL-GGEDELSPAG-- 66 Query: 77 DNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 R + DL+ + S +D R + ++ A G ++V ++D Sbjct: 67 ---RRVSAATHADLLVVARGFDEKRQKYRSEIVADDVRPINSFLRRTAAEGGWRVVIVDG 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++R + NA+LK LEEPP LL + P +L TI SRC + L +LD + L Sbjct: 124 AEYMNRSAANAVLKILEEPPPATVLLLTCSAPGRLLPTIRSRCRKLELASLDAADMSAVL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 +Q + A G+ AL+L A G++ V ++ + Sbjct: 184 RAQAP----DASDTEIQRVMAEAHGAPGRALALL----ADKGGEI-ASLVHEVVQGITPL 234 Query: 248 QALSLVEAMVEAN 260 ++ + E ++ + Sbjct: 235 RSYEVAETILRRD 247 >UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizobiaceae RepID=C6XHE7_LIBAP Length = 347 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 131/341 (38%), Gaps = 48/341 (14%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC- 76 + G E + L+ GR+HHA LF G +G+GK ++ A + + P +C Sbjct: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 Query: 77 -DNC----REIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPARGRFKV 122 D C +++ D + + + V++ R + + G ++V Sbjct: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL +L Sbjct: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT----DQAIASGDGQVSTQAVS 238 + LE + I + AA GS+ A+ + D+ I+S + Sbjct: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQE 249 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L + + + ++ + + + E +L E + + + Sbjct: 250 YAL-----QKMQQIADELLSQDQKIAFDFL---------IEFILKE---------ICKSA 286 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 AA + ++ ++ + + R+++ Sbjct: 287 KAAALSGQLEEADQIAQI--YFSLVKRVHAFSMYNLDRRQM 325 >UniRef50_A0LWD2 DNA polymerase III, delta prime subunit n=6 Tax=Actinomycetales RepID=A0LWD2_ACIC1 Length = 442 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 85/434 (19%), Positives = 143/434 (32%), Gaps = 92/434 (21%) Query: 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 F +++GQ+ V+ L + R + HA+LF G G G++ AR A L C Sbjct: 6 FGEIIGQQQVVETLRAVAAAARASGAGMTHAWLFVGPPGSGRSVAARAFAAALQCRAAEP 65 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C +CR + G D+ + V + R+L+ APA R++V ++++ Sbjct: 66 G--CGECTDCRTVLAGTHPDVTIVRPQGLSLGVAEARELVARAALAPANARWQVVVLEDA 123 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ + N LLK +EEP +LL P L TI SRC L+ V + L Sbjct: 124 DRLTEGAANVLLKAIEEPAPRTVWLLCVPAPHDLVPTIRSRCRLVTLRTPPVAAVAELLI 183 Query: 189 HILNEEHIAHE-----------------------------PRALQLLARAA-----EGSL 214 +A + L+ AR A G L Sbjct: 184 R---RNGVAADTAELAARAAGAHIGRALRLATDARARARRSAVLEAAARLAGPIDLGGCL 240 Query: 215 RDALSLTDQAIASGDGQVST------QAVSAMLGT--LDDDQALSLVEAMVEANGERVMA 266 R A L D A + + A+ LG + ++ + + Sbjct: 241 RVAADLVDAATSEATTETEALDQAETAALREALGEGGTASGDRRRVASGVLRGSSAALRE 300 Query: 267 L-----INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG------------------ 303 L + A+ + L+++ G + +VQL AA Sbjct: 301 LEARQKSRASRAQRDALDRTLMDLAGFFRDVLLVQLGVAAETVSGVAEAVPGVAEGVSGA 360 Query: 304 ----------------NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 A + R+R++A P ++ R L + + Sbjct: 361 GAAGAVPGVAARSRPWVMNADVLDRIRDVAARSTPEMTLHRIDAIMECRAALAANANPLL 420 Query: 348 GVEMTLLRALAFHP 361 E ++ Sbjct: 421 AFEALAIQISGLAA 434 >UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHK9_ENTBH Length = 303 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 124/301 (41%), Gaps = 39/301 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALAN--GLSLGRIHHAYLFSGTRGVGKTSIARLL 58 M Y L K+RP ++ G +++ L + L + LF G G GKT+ + L Sbjct: 1 MEYTKLTEKYRPTDLNNICGNTNIIQCLKSFSLLDFPNM----LFYGPPGTGKTTTIKAL 56 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFV-DLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 I +++E++A+ + R+ + Q+A Sbjct: 57 -----------------------IHNKINPINILELNASDDRGINIVRNQIK--QFAETS 91 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + ++ ++DE +SR + NAL + +E+ E+ +F L + + I SRC +F Sbjct: 92 TQLRLVILDEADSMSRDAQNALRRIMED-YENCRFCLICNYVKNIIDPIQSRCAKFKFSN 150 Query: 178 LDVEQIRHQLEHILNEEHIAHEP-RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + E+++ I+N+E+I E + +L AA G +R ++ Q I ++ + Sbjct: 151 MTDEEVKCHALEIINKENIVIEDIEGISMLVSAANGDMRKLINDI-QGIKKTYNKIDKKH 209 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V LG +D DQ + ++ IE E +L E+ +I ++ Sbjct: 210 VQEFLGIVDQDQINKICGWLLNPEI-SFKNAYMAILNEDIECETILQEI---FKKILTLK 265 Query: 297 L 297 L Sbjct: 266 L 266 >UniRef50_D0L216 DNA-directed DNA polymerase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L216_HALNC Length = 361 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 16/193 (8%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCDNCREIEQGRFV 88 R+ H L +G G+G ++AR +A L C +T CG C CR G Sbjct: 54 RQDRLPHGLLVTGASGLGSLTLAREMAAYLLCADPVTTPGAERACGQCAACRLRLAGTHP 113 Query: 89 DLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 D+ + +A+ VED R L++ G +V LI++ ++R + N LLK LEE Sbjct: 114 DIQLLVRDNASKDISVEDIRTLIERFSLTRY-GPLRVALIEQAERMNRSAANGLLKLLEE 172 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL--EHILNEEHIAHEPRAL 203 PP FL+ + LP TI SR + + I L + L+ E E L Sbjct: 173 PPAGSLFLMTSERADLLPSTIRSRIQRLTMTVPRRAVIVDWLTQRYGLSTE----EAELL 228 Query: 204 QLLA--RAAEGSL 214 + R +GS Sbjct: 229 WFIGDDRLMDGSP 241 >UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARJ9_SEBTE Length = 382 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 119/271 (43%), Gaps = 25/271 (9%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L N + + +YLF G + V A +K CE CGVC+ C+ ++ Sbjct: 12 IDRLINEAAKDKESASYLFYGDKRVDLLFYALEFSKLFLCENFKDNDYCGVCNVCKSVDN 71 Query: 85 GRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 + D+ I+ + K++D R+++ N +P + + KVY+++ V L + S NALLK + Sbjct: 72 YSYPDIEIINKDEQGVKIDDVREIILNAIESPYKAKKKVYILNGVEKLRKESANALLKII 131 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP+++ F+L + +P TI SR + F +K LD+ E + E Sbjct: 132 EEPPKNLYFILLSKSLNIIP-TIKSRVMTFVIKPLDI-------------EALEVEKE-- 175 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 + +G+++D + GQ+S + + + L E ++ E+ Sbjct: 176 --IYYFFDGNVKDIELWKKKKQDLSCGQLSLEEIFRNIEV--YYIYNELTELLMRVQAEK 231 Query: 264 VMALINEAAARGIEWEAL---LVEMLGLLHR 291 + E +++ + E+L + Sbjct: 232 LFNDKKEFM-SKPDFKIFKDYIKELLEIYED 261 >UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QKY2_ESV1 Length = 324 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 59/338 (17%), Positives = 132/338 (39%), Gaps = 31/338 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLL 58 M+ Q K+RP F++VVG + ++ L+N L+ R I H L G G GKT +L Sbjct: 1 MTAQPWVEKYRPLCFSEVVGNKKSISLLSN-LAAKRVSIPH-LLICGPSGCGKTVCVDIL 58 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA---- 114 C I + R ++ + + +++ R + N Sbjct: 59 --------------CNT-----MIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGT 99 Query: 115 -PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 P K+ ++DE ++ +F AL + ++ +F++ + K+ I SRC Sbjct: 100 EPTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAIL 159 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 +D Q+R ++ + + + ++P + LA A+G +R A++ ++ G +++ Sbjct: 160 RFSKVDDAQLRLRIRQVCDMAGVEYDPGGIGALACVADGDVRSAINSLASIVS-GFRRLT 218 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGE-RVMALINEAAARGIEWEALLVEMLGLLHRI 292 ++ V + + + +V+ + G + G E + + + Sbjct: 219 SENVYRTCRSPQPAKIVDIVDLLRNKGGYVEACRKLRGLCGEGGEGYSPTDILSSFFKAL 278 Query: 293 AMVQLSPAALGNDMAAI-ELRMRELARTIPPTDIQLYY 329 +++ + + I ++ R L+ + Sbjct: 279 SVIDVRESQRIEIAKVIGLVQNRVLSGASSYLQLAAML 316 >UniRef50_A5WF95 DNA polymerase III, delta prime subunit n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WF95_PSYWF Length = 374 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 125/319 (39%), Gaps = 62/319 (19%) Query: 30 NGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT----PCGVCDNCREIEQ 84 N ++ R+ H LF+G +G+GK + L C+ + CG C +C+ + Sbjct: 22 NLIARYERLPHGLLFAGMQGIGKRAFVWRFVAWLLCDNREQPSSQQGACGQCQSCQWLAS 81 Query: 85 GRFVDL----------IEIDAAS------------------------RTKVEDTRDLLDN 110 G DL +E++AA+ K++D R+L Sbjct: 82 GTHPDLQVLPISSLPSLEVEAATATKGGKSNTKKASENEAAKASVKLSIKIDDIRELQPF 141 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + +V +ID ++ + NALLKTLEEP E + LL + P KL TI SR Sbjct: 142 IS--QGSSGRRVCVIDYADKMTVAAANALLKTLEEPREGIHLLLISDMPTKLLPTIRSRV 199 Query: 171 LQFHLKALDVEQIRHQLEHILNE--EHIAHEPRALQL---LARA---AEGSLRDALSLTD 222 Q + + EQ+ LE+ +++ ++ A A L +A+A + G+ AL + Sbjct: 200 QQVAMDPMAHEQVVAYLENHVSQHTQNPAQSDNAAPLSEQVAQALKLSNGAPLAALEMLS 259 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG----IEW 278 A G + V L A+ ++ + +++ +++ Sbjct: 260 SAWYQQRG--TWVKVWLALRAGKRS-------AIAASDYWQKQLSLDDFIKLSEFMLMDF 310 Query: 279 EALLVEMLGLLHRIAMVQL 297 + M L +A+ Q Sbjct: 311 SRQCLGMPTLQQDLALAQY 329 >UniRef50_A7INF3 DNA-directed DNA polymerase n=2 Tax=Xanthobacteraceae RepID=A7INF3_XANP2 Length = 347 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 23/273 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ A + G V L GR+ HA L G G+GK ++A LA+ + + Sbjct: 20 PRDQARLFGHGVVEADLIGDFRAGRLPHALLIGGPEGIGKATLAYRLARMVLSGGPEAGS 79 Query: 72 -----PCGVCDNCREIEQGRFVDLIEID---AASRTKV------EDTRDLLDNVQYAPAR 117 P R++ DL+ + A K+ E R + A Sbjct: 80 HSLDLPVTH-PVFRQVASQSHPDLLVLHRVPEAGEEKIPTVIPAEMVRRVRSFFGATAAA 138 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G ++V ++D V L+ NALLKTLEEPP FLL + P ++ TI SR ++ Sbjct: 139 GGWRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSRTRLLRMRP 198 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L + L+H L EE + L A A+ GS+R A+ L G+G A Sbjct: 199 LGSADVLAALDH-LKEEMADLDAATLPSAAEASGGSVRRAIVLAR-----GEGMEVRSAT 252 Query: 238 SAMLGTLDDDQALSL--VEAMVEANGERVMALI 268 L L + L + A ++ + + L Sbjct: 253 LKALEQLPRPRPEDLHALGARLQGDRSDGLDLF 285 >UniRef50_B0U3X0 DNA-directed DNA polymerase n=23 Tax=Xanthomonadaceae RepID=B0U3X0_XYLFM Length = 330 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 104/293 (35%), Gaps = 32/293 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q+ + L G + H L G G+G+ ++A A + G+T C + Sbjct: 20 QQRAYDQMVAALDAGHLGHGLLLCGPEGLGQRAVALAFADAVL-GKGLTEVARQRCR--Q 76 Query: 81 EIEQGRFVDLIEIDA---------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 I G DL + + +E RDL + + P G+ +V +ID + Sbjct: 77 LITAGTHPDLQLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTPQYGQAQVVIIDPADAI 136 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP L + P +LPVTI SRC + K + + L Sbjct: 137 NPAACNALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEFKLPPLHEALAWLVAQG 196 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E +A E AL AA G A+ + +V+ + G + + Sbjct: 197 ITEEVAVE--ALD----AARGHPGLAMQWLCDEGMALRRRVAVELEQLASGQMSAVKLAQ 250 Query: 252 LVEAMVEANGERVMALINEAAARGI-----EWEALLVEMLGLL------HRIA 293 + + E+ + + A + L + + Sbjct: 251 --QWTADGKAEQRLYHAADLAFMQATSVLTDPSRLHK-LATWFDAVNRTRDLL 300 >UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=2 Tax=Oligohymenophorea RepID=A0CAF3_PARTE Length = 340 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 113/295 (38%), Gaps = 33/295 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T +V+ E ++ + R+ + L G G GKTS LAK + Sbjct: 15 IPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPN-LLLYGPPGTGKTSTIIALAKQI- 72 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA------- 116 + ++E++A+ + R+ + + + Sbjct: 73 ------------------YQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDK 114 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K+ ++DE ++ + AL + +E+ + +F ++ I SRC +F K Sbjct: 115 NTSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFK 174 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQV 232 + ++ ++++I E I +A++ + G +R +++ + S + Sbjct: 175 QISLDVASSRIKYICENESIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVI 234 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAA-ARGIEWEALLVEM 285 ++Q V G D ++E ++ ++ I +GI + LL E+ Sbjct: 235 NSQYVYQFTGMAHPDLIKQIMEYLMNQSEIQKTYLKIKTILNEQGISLQLLLTEL 289 >UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacterales RepID=A8LRV9_DINSH Length = 381 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 127/385 (32%), Gaps = 48/385 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ V G L + ++ R+HHA+L +G +G+GK S A A+ L Sbjct: 19 PRFATRVFGHGAAEADLLDAVASDRLHHAWLLTGPKGIGKASFAWRAARFLLATPASDPG 78 Query: 72 PCGVCDN---------------CREIEQGRFVDLIEI-----DAASRTK----VEDTRDL 107 P D R I L + + SR K V+ R L Sbjct: 79 PSLFGDAPAAATSLDIDPDHPVARRIAALSDPRLYLLRRPYDEKTSRFKQDIPVDAARGL 138 Query: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + G +V ++D ++ + NALLK LEEPP LL P KL TI Sbjct: 139 KGFFTMSAVDGGRRVVIVDAADEMNASAANALLKVLEEPPVDTVILLVCHAPSKLLPTIR 198 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC + L + L L L L AEGS+ A++L Sbjct: 199 SRCRTLRMGPLSEPDLGDALAQAL---GAPLPDAELASLNALAEGSVGQAITL------- 248 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G L L++ + + + L AAARG E L+ ML Sbjct: 249 ----------RDAGGPEAYGSLLGLMDGLPRLDRPATLKLAESAAARGAEARFDLLLMLT 298 Query: 287 -GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L R+A + ++ LA T Q L+ + A + Sbjct: 299 ETFLFRLARTGATGHPPTGASPQEAALLQRLAPTAQAARGWATAQATLLAKARAGRAVN- 357 Query: 346 RMGVEMTLLRALAFHPRMPLPEPEV 370 + LL + + Sbjct: 358 -LDPTALLLDMFHGLQEVASAQGTA 381 >UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B0Z4_9ENTR Length = 328 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 12/244 (4%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 L + GR HHA L G+G +++ L++ L C+ C C +CR Sbjct: 8 NQAYRQLISIYQEGRGHHALLLHAIEGMGGEALSYGLSRWLMCQNRQGLKSCNECHSCRL 67 Query: 82 IEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + D + S +E R + + +++ + F+V I +V L+ + NA Sbjct: 68 MLAETHPDWHILQSEKGKSSIGIEAVRKVTEKLEHHAQQSGFRVVWIKDVEALTEAAANA 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP+ FLL P+ L T+ SRC +HL +++ H L+ L +I + Sbjct: 128 LLKTLEEPPKDTYFLLNCQHPEVLLATLRSRCFYYHLATPNLQHATHWLQQQLP--NIPY 185 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 L ++ + ALSL + ++ Q A+ ++ S + + + Sbjct: 186 ANSVTAL--NLSQNAPVLALSLLKDEW--KEREIFCQ---ALYTSIQQHDLYSFLPQLNQ 238 Query: 259 ANGE 262 N E Sbjct: 239 DNAE 242 >UniRef50_UPI00016A2E07 DNA polymerase III subunit delta'''' n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A2E07 Length = 215 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 30/181 (16%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREIEQGRFVDLIEI--- 93 HA L G G+GK A+ LA+G CET PCG C C QG D + Sbjct: 21 PHALLLHGQAGIGKLQFAQHLAQGFLCETPQANGEPCGACAACTWFVQGNHPDYRIVLPE 80 Query: 94 --------------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 + K+E R LLD RG +V ++ Sbjct: 81 ALAGEAPGAVDDARPADADDGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYP 140 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 L+ + NALLKTLEEPP V FLL + +L TI+SRC Q+ + ++ L Sbjct: 141 AEALNVAASNALLKTLEEPPAGVVFLLVSARIDRLLPTIISRCRQWPMTVPAPDEAAAWL 200 Query: 188 E 188 Sbjct: 201 A 201 >UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL87_9FIRM Length = 342 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 66/360 (18%), Positives = 129/360 (35%), Gaps = 41/360 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 Q V GQE + L + R+ H +F G G+GKT+ A A L T Sbjct: 3 QFLTHVYGQEKLKRELKLLMENHRLPHTMIFYGDDGLGKTTAAFDFADFL------TGAS 56 Query: 73 CGVCDNCREIEQGRFVDLIE---------IDAAS-RTKVEDTRDLLDNVQYAPARGRFKV 122 + ++I+ + L+E I K++ R ++ A + +V Sbjct: 57 EKIWVEIKKIKSSKNEKLLENLKGDRVWYIRPMGMELKIDQFRAFMEE--MASFDEKLRV 114 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID+ +++++ N+ LKTLEEP E++ F+L T+D L TI+SR +F L + Sbjct: 115 CIIDDAQKMNQYAANSFLKTLEEPVENLYFILVTSDINALLPTIVSRGERFPFFPLMENE 174 Query: 183 IRHQLEHILNEEHIAHEPRALQLLA-RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +E + E + + A + +EG+ A L + Sbjct: 175 FYYLVETVA--EEFNFDGTVGKETAFKVSEGNPGVAKDLCGEK----------------- 215 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D A+ E + + + ++ ++ LL ++ + + + + Sbjct: 216 GMMQLDVAMRFWETVTTS--STAFSSLSAWTFKEREDFLVLLRWVIIIGRDLMIGAETTD 273 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R + L + L + +M L++ Sbjct: 274 DQLEKCMQWSDREKRLLKYWTDGRAIEALAVLQKAESACRRYISTKNIWDMILIQLQHIQ 333 >UniRef50_D2RCC6 DNA polymerase III, delta' subunit family protein n=3 Tax=Bifidobacteriaceae RepID=D2RCC6_GARVA Length = 392 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 135/399 (33%), Gaps = 63/399 (15%) Query: 15 FADVVGQEHVLTALANGL--SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + V+GQE V++ L N +I ++L G+ G G +AR A L E+ Sbjct: 4 WDSVIGQEQVVSRLRNIACADASKIAQSWLICGSAGFGSAQVARAFAAAL--ESPDHGEG 61 Query: 73 CG-------VCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYL 124 + +E+ G D+ + T ++D R+ + + P+ +++ + Sbjct: 62 SDGISGEGELSKTTKEVLAGSHPDVHTLATKGVTLSIDDVREAIGISEQMPSTAPWRIII 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 I++V + S N LLK +EEP EH +LL + + TI SR L + + I Sbjct: 122 IEDVDRMLERSTNVLLKEIEEPSEHTIWLLCASSVMDVLPTIRSRTQLVQLATPNEQSIA 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L + + AR ++G++ A A + V+ +L Sbjct: 182 EYLTK-----KTDADNKLASRAARLSQGNIATAFIYASDERALSRRD---ELVAGLLRMH 233 Query: 245 DDDQALSLVEAMVEANGERVMALINE-AAARGIEWEAL---------------------- 281 D A+ L +++ + + + E+ + Sbjct: 234 DAADAIMLAAMLIDDAKAQAEDEVQRNVEDQQKEFRRINGLGDEDRIPPKLRANYNAIGK 293 Query: 282 -------------------LVEMLGLLHRIAMV-QLSPAALGNDMAAIELRMRELARTIP 321 L + + + +V + + + R+ +LA+++ Sbjct: 294 KDDVKRKVTRVSRDVLCRSLDAIDSVYRDVLVVINDAQKSSPIINQEYKSRIVQLAQSMT 353 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ R+ L + + E L Sbjct: 354 ASSALDCVDSIATARRRLSRNGNATLVFEALFCSLLQSQ 392 >UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LVK3_9ALVE Length = 354 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 117/317 (36%), Gaps = 36/317 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+T D+V + ++ + + + + H L G G GKTS +LA Sbjct: 33 KYRPKTLDDLVAHQEIIETIKRFVKMNALPH-LLLHGPPGTGKTST--ILACA------R 83 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF-------- 120 P G ++E++A+ ++ R+ + Q+ +R F Sbjct: 84 QMYPPGQLRQ----------YVLELNASDARGIDVVRECIK--QFVSSRSMFSGSLGTNM 131 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ ++DE ++ S AL + +E+ + +F L K+ + SRC +F L Sbjct: 132 PKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLK 191 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVS 238 + R +++++ E + + L R EG +R L+ ++ V + Sbjct: 192 DAEARMRVDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIH 251 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQL 297 + G + L + + M +I E G LL E +H + Sbjct: 252 KVAGLPETSTIDRLEAVLCQKPLREGMMVIEELRVKHGYSVADLLRE----IHDRMVTVD 307 Query: 298 SPAALGNDMAAIELRMR 314 P N + + Sbjct: 308 MPPRARNLLFRDLAEIE 324 >UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIN0_THIDA Length = 327 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 21/219 (9%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLI 91 + R A L +G RGVGK+++A A+ L CE + CGVC C E G D Sbjct: 18 TRSRPAQALLLAGPRGVGKSALALEWARALLCEAPRPDGSACGVCPACHWFETGAHPDFR 77 Query: 92 ------------EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 E A+ +V+ RD +D VQ + R ++V L+D L+ + NAL Sbjct: 78 RVGLQEKTSKEGETRLATAIEVDQARDAVDFVQLSTYRAGYRVVLVDPADSLNLAAANAL 137 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEPP + F+L P++L TI SRC + + + Q L E+ + Sbjct: 138 LKVLEEPPLNTVFVLVADQPRRLLPTIRSRCTRLDVGLPALAQATAWL----GEQGV--- 190 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 A LLA A G+ AL + + V Sbjct: 191 DDAPTLLA-LAGGTPLAALGWCEGEVLDERRGVLEGLAR 228 >UniRef50_A0Z287 DNA polymerase III subunit delta n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z287_9GAMM Length = 322 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 19/307 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L L++ ++ HA L +G RG+GKT +A A GL CE PCG C +C+ Sbjct: 18 QHGTLERLSSLEQQEKLPHAILLTGARGLGKTQLAASFATGLLCEAR-GVEPCGSCASCQ 76 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D I + V+ R + +Q G KV +I+ ++ + N Sbjct: 77 LAGGGAHGDFRWIAPEEGKRAIGVDAIRSAVTFMQQTSGYGSHKVLVIEPAEAMTAAAAN 136 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP +L + +LP T+ SRC +++L L E + Sbjct: 137 ALLKTLEEPPGKALLILVSHRSGELPATVRSRCQRYNLPHPSRSSTLTWLA-----EQTS 191 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA-LSLVEAM 256 + A+ A+ L + + + A+ G LD +A + A+ Sbjct: 192 CSEPVAERAYSLAQAQPLTAVQLIRGEDLASKEAL----IMALDGLLDGSKAGPEALAAL 247 Query: 257 VEANGERVMALINEAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + ++ ++ R I + + +L R +++ A ++ + Sbjct: 248 NGYDLDVILEAALQSVERRIYIADGDRVLK--ADFYRRDKILEWLIANRKGINFGRDVIL 305 Query: 314 RELARTI 320 ELAR + Sbjct: 306 PELARLL 312 >UniRef50_C6QCX8 ATPase involved in DNA replication n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCX8_9RHIZ Length = 373 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 22/274 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK-GL-------NCETGIT 69 ++G + L+ L + L+ GR+HHA+L +G +G+GK ++A AK L G++ Sbjct: 31 LIGHDAALSMLTDTLAGGRMHHAWLLAGPKGIGKATLAYQFAKIALARPEERDLFGQGMS 90 Query: 70 ATPCGVCDNCREIEQGRFVDLIEI----DAASR-----TKVEDTRDLLDNVQYAPARGRF 120 P R+I L+ I D ++ V++ R L + + + Sbjct: 91 IEP--NSPTDRQIRALSHPGLLVIRRTYDPKTKRFSQTIPVDEVRRLKTFLALSAESQGW 148 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V ++D ++ ++ NALLK+LEEPP FL+ T+ P +L TI SRC L L Sbjct: 149 RVVIVDSADDMNANAANALLKSLEEPPPRTIFLVVTSAPGRLLPTIRSRCRIAVLSPLSE 208 Query: 181 EQIRHQLEHILNEEHIAHEPR-ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ L + L A+GS+ AL+L + ++ A+ Sbjct: 209 ADLKRGAAQALTSAGKPVPEAHDWEPLLPLAQGSVGRALTLLGGGGLALQARI--DAILN 266 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 L LD +L + + A ER L E Sbjct: 267 GLPKLDAKAVHALGDDLQAAAQERKFELFFELYQ 300 >UniRef50_B1ZIW3 DNA-directed DNA polymerase n=9 Tax=Alphaproteobacteria RepID=B1ZIW3_METPB Length = 363 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 RP+ ++GQ H TA A L+ GR+HHA+L G +G+GK ++A +A+ L + Sbjct: 27 RPREQTRLLGQSHAETAFAAALASGRLHHAWLIGGPQGIGKATLAYRVARRLVADPRTLP 86 Query: 71 TPC-----GVCDNCREIEQGRFVDLIEID-----AAS----RTKVEDTRD-LLDNVQYAP 115 +P R++ +LI + A R V+ R+ L A Sbjct: 87 SPDSLDVPEDHPASRQVAALSHPNLIALRRVQAPGAKTLPTRISVDAAREALTLFGTTAG 146 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G ++V ++D L+ +S NALLK +EEPP FL+ + P +L TI SRC L Sbjct: 147 GEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALAL 206 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L +R +E + + AL+ +EGS+ A++L D A A+ + +VS Sbjct: 207 RPLAASDVRAIIEAFPPPF-VRPDAAALERACALSEGSVARAVALLDPATAAVEAEVSA- 264 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 + A L D + L L E + + E+++A +A R Sbjct: 265 -LLADLPEPDGRRVLKLAETLAGRDAEKLLATALDAIQR 302 >UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma gondii RepID=B6KT76_TOXGO Length = 398 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 122/354 (34%), Gaps = 59/354 (16%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +DV+ + ++ + N + G++ H LF G G GKTS +AK Sbjct: 40 KYRPERLSDVLAHDDIIRTIRNYVHKGQLPH-LLFHGPPGTGKTSTILAVAKEF------ 92 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF-------- 120 ++E++A+ + R+ + + Sbjct: 93 -------------YGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSFQQNRLIFGK 139 Query: 121 ---------------------------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 K+ ++DE ++ + NAL + +E +V+F Sbjct: 140 SAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFC 199 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 L K+ I SRC F + ++ + I+ +E + L L + A G Sbjct: 200 LICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALVKIARGD 259 Query: 214 LRDALS-LTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 +R L+ + +A +V+ V LG + ++ E ++ A+ ++E Sbjct: 260 MRRLLNCMQASHLAHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCKELDELV 319 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 + + + H ++ PA + + + E T +Q Sbjct: 320 TAK---GYAMRDWVIAFHERILLVDWPANVLITFVSRLADLEERLATGASEAVQ 370 >UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Tax=Trypanosomatidae RepID=Q4FYR7_LEIMA Length = 360 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 69/360 (19%), Positives = 136/360 (37%), Gaps = 45/360 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RPQT D+VG ++ L G + + L G G GKT+ LA+ L ++ Sbjct: 11 KYRPQTVVDIVGNTEAISRLQVIAKQGNLPN-LLLCGPPGTGKTTSMLCLARDLLLQSTD 69 Query: 69 TATPCGVCD--NCREIEQGRFVDLIEIDAASRTKVEDTRDLLD----------NVQYAPA 116 T + G ++I + ++E++A+ ++ R+ + ++ Sbjct: 70 TGSA-GASPGGAMKDILKDA---VLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTG 125 Query: 117 RGR---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 G K+ L+DE ++ + AL +T+E +F A + ++ I Sbjct: 126 EGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQ 185 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC K L I +L +++ E++++ L+ L AEG LR AL+ QA + Sbjct: 186 SRCAVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALNAL-QATHT 244 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEA-MVEANGERVMALINEAAARGIEWEALLVEM- 285 G G V+ V + +++ A + + N E +N RG ++ Sbjct: 245 GYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIATFF 304 Query: 286 ------LGLLH----RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 L ++ ++++ + ++ A + L Sbjct: 305 KVAQTHARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAA------MLARMIAALENT 358 >UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=Shewanella RepID=A8H3V9_SHEPA Length = 305 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 1/163 (0%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 + L R+ HAYL G G S+ LAK C CG C C+ IE Sbjct: 14 FSEQLKTARVGHAYLVGMDAGYGGESLVLELAKMSLCHQLGQGGACGFCKACQLIEANNH 73 Query: 88 VDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 DL ++A + KV+ R+L + +G +V +I L++ S NALLKTLEEP Sbjct: 74 PDLYLVEAEGAQIKVDQIRELCQKLTTTSQQGGRRVAVILNSERLNQASGNALLKTLEEP 133 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + LL T P +L TI SRC + ++ + Q++ L+ Sbjct: 134 GKDTILLLQTNAPSRLIATISSRCQRLRVELPNKMQVKQWLKE 176 >UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C1AD Length = 453 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 67/379 (17%), Positives = 120/379 (31%), Gaps = 67/379 (17%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR 98 HA+LF+G G G++ A A L C CG C+ CR G D+ + Sbjct: 72 HAWLFTGPAGSGRSVTATAFAAALLCTRHDNPG-CGECEGCRTALAGTHGDIKIVRPEGT 130 Query: 99 T-KVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA- 155 V R +L P +V +I++ L+ + NALLK +EEPP ++ Sbjct: 131 IISVATVRDELRPWAYKMPTTADCRVLIIEDADRLNESASNALLKVVEEPPLRTVIIMCA 190 Query: 156 -TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 TT+ + VT+ SRC ++ ++ + + L E A + G + Sbjct: 191 PTTNAEDFSVTLRSRCRHVYVPTPHIDDVANLLR----AERPELTDEQAVWAATVSNGHI 246 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLG-----TLDDDQALSL----------------- 252 A + + V A+ + A + Sbjct: 247 GRARGFVSDEGSRAWRGKALDFVEAVFDPAKSYLAARELANEVAGEVKRRMEPLEAEELE 306 Query: 253 --------------VEAMVEANGERVMALINEAAARGI-----EWEAL-LVEMLGLLHRI 292 +A + + V+ + + R + L L +++GL Sbjct: 307 NLERSLGVGASGKGAQAALRG-SKGVIKELEDNQKRRRRRAESDLIDLSLTDIMGLYRDA 365 Query: 293 AMVQLSPA---------------ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK 337 ++ A+ ELAR +PP I + R Sbjct: 366 LVLAFGAERAGSASGADSEFGNGAVYLINPDRRRTATELARRLPPEAILASIDAVTEVRG 425 Query: 338 ELPYAPDRRMGVEMTLLRA 356 L A + ++ + + Sbjct: 426 MLVTAVKLTVLMDELMAKL 444 >UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Pasteurellaceae RepID=HOLB_HAEIN Length = 327 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 112/319 (35%), Gaps = 42/319 (13%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 QTF + +G HA L G+G S+ LA+ + C P Sbjct: 17 QTFDEGLGH-----------------HAVLIKADSGLGVESLFNALAQKIMCVA-QGDKP 58 Query: 73 CGVCDNCREIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +C ++ D E+ V+ RD+ + V + KV + Sbjct: 59 CGQCHSCHLMQAHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAER 118 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR-HQLEH 189 L+ + NALLKTLEEP + FLL L TI SRC ++L + E+I L+ Sbjct: 119 LTEAAANALLKTLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLS-VPNEEIAFEWLKS 177 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV--------SAML 241 E+ L LA G AL + Q +L Sbjct: 178 KSAVENQEI----LTALA-MNLGRPLLALETLQEGFIEQRKNFLRQFWVFYRRRSPLELL 232 Query: 242 GTLDDDQALSLVEAMVEANGERVMALIN-----EAAARGIEWEALLVE--MLGLLHRIAM 294 D ++ + V+ ++ + + + + A G E E LGLL I + Sbjct: 233 PLFDKERYVQQVDWILAFLSDCLKHKLEIDSHRQVADLGRGIEQFSDEQTALGLLQAIKI 292 Query: 295 VQLSPAALGNDMAAIELRM 313 +Q + L M Sbjct: 293 MQKVRSDLLTINGVNVELM 311 >UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia intestinalis RepID=A8BRC3_GIALA Length = 322 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 111/291 (38%), Gaps = 23/291 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M ++RP+T ++G +L L + G + + LF+G G+GKT+IA LA Sbjct: 1 MKALPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPN-ILFAGGPGLGKTTIALCLAN 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 + + R V +E++A+ V D R + Sbjct: 60 -------------------QMLGAHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPA 100 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G K+ +DE ++ + L + +++ +F LA + K+ + SRC + Sbjct: 101 GIQKLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMP 160 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ L+ I +E + + AL+ L + +R L+ + + ++ V Sbjct: 161 ATQAELIKYLQEICEKEGVKSDTEALKELISISGNDVRSCLNSLQLVADANNKVITVAGV 220 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L T+D +++ + + LI+ G ++ + M Sbjct: 221 QKALSTIDVKVIDQVMKLLTSGKFDDGWMLIDNQLNEGYNYDDIYNAMFRY 271 >UniRef50_A4BDY7 DNA polymerase III subunit delta n=1 Tax=Reinekea blandensis MED297 RepID=A4BDY7_9GAMM Length = 320 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 18/245 (7%) Query: 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 86 AL+ GR+ H L G G G + LA+ L C PCG C +C I G Sbjct: 14 ALSQQFIEGRLPHGLLLVGHPGNGANLFSTNLAQRLLCLDKAN-QPCGRCKSCLLIASGH 72 Query: 87 FVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 DL ++ + KVE R+++ +G KV + ++ ++ NALLK L Sbjct: 73 HPDLKVVEPEGKSQTIKVEAIREVIRRATETAQQGGNKVVWLKSAETMNVNAANALLKVL 132 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPPE+ L+ +L T+ SRC L + L N+ + + Sbjct: 133 EEPPENTFLLVQAAQMARLLPTVRSRCRIVQLAQPERSDALSYLSAH-NQLNQPVD---- 187 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 +L G DAL LT + I +V + V L + + + + Sbjct: 188 -VLLSMVSGRPLDALDLTQEQID-TWFEVERKFVEN-------QSFTELSQFLAKQELSQ 238 Query: 264 VMALI 268 V+ Sbjct: 239 VLEQA 243 >UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CUE4_CRYPV Length = 383 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 115/321 (35%), Gaps = 54/321 (16%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL------ 62 K+RP D++ + ++ + +S G++ H LF G G GKTS ++K + Sbjct: 17 KYRPSGLQDLLSHKDIINTIEKFISSGQLPH-LLFHGPPGTGKTSTIHAISKCIYKDRKY 75 Query: 63 ---NCETGITATPCGVCDNCRE-----------IEQGRFVDL--IEIDAASRTKVEDTRD 106 V + + G ++ IE+ S ++ + Sbjct: 76 QMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLDCNKS 135 Query: 107 LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 L +N+ K+ ++DE M++ + AL + +E EHV+F + K+ + Sbjct: 136 LCENI---------KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPAL 186 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRC +F L +E IR+++ I E I + L +++ G +R L++ Sbjct: 187 QSRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSM 246 Query: 227 SGDGQVS---------------------TQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 S G + + + +LG + + + + Sbjct: 247 SNYGNIEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSSGF 306 Query: 266 ALINE-AAARGIEWEALLVEM 285 + + G + + + Sbjct: 307 SALQNSQNENGYSTQDFVNGL 327 >UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 Tax=Eutheria RepID=Q29RS9_BOVIN Length = 337 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 120/302 (39%), Gaps = 44/302 (14%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELF 101 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------R 119 ++E++A+ ++ R+ + N G Sbjct: 102 RLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP 143 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F K L Sbjct: 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVS 238 + + +L I ++EH+ + L + +EG LR A++ A +G +V+ + ++ Sbjct: 204 DKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVIT 263 Query: 239 AML------GTLDDDQALSLVEAMVEAN---------GERVMALINEAAARGIEWEALLV 283 + G L + +VE + +A +++ A G + L+ Sbjct: 264 DIAGDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLI 323 Query: 284 EM 285 + Sbjct: 324 SL 325 >UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Schistosoma mansoni RepID=C4Q6I1_SCHMA Length = 468 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 108/279 (38%), Gaps = 28/279 (10%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP D+VG E+ + L+ G + + + +G G GKT+ LA+ L Sbjct: 158 KYRPIELEDIVGNENTICRLSVFARDGNLPN-IIIAGPPGCGKTTSILCLARTLLKSAYK 216 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-----LLDNVQYAPARGRFKVY 123 A ++E++A++ +E R V GR K+ Sbjct: 217 EA-------------------VLELNASNERGIEVVRTKIKMFAQKKVSLP--EGRQKII 255 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + AL + +E +F LA D KL I SRC L Q+ Sbjct: 256 ILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTSAQV 315 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L + E +++ L+ + A+G +R AL+ Q+ G G VS+ V + Sbjct: 316 MARLLEVSRFEGVSYTEEGLEAIVFTADGDMRQALNNL-QSTHEGFGMVSSDNVFKVCDE 374 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 L++ + ++ G E ++ Sbjct: 375 PHPMLIKQLIDHCSKGELSAAHKILRHLWTLGYSAEDII 413 >UniRef50_B0C2T4 DNA polymerase III, delta prime subunit n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C2T4_ACAM1 Length = 320 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 63/383 (16%), Positives = 119/383 (31%), Gaps = 88/383 (22%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++GQ + L +S RI AYLF+G G+G++ +A L Sbjct: 2 FKGIIGQSAAIEYLQRAISTQRIAPAYLFAGPEGIGRSRVAEQFLSLLL--DPEQTE--- 56 Query: 75 VCDNCREIEQGRFVDLIEIDAA------------------------SRTKVEDTRDLLDN 110 + D + I + ++ RD+ Sbjct: 57 ------QRSLRNHPDSLWIAPTYKHKNKLMTVAQMQAQEIALPRSHPQIRLAQIRDMTQF 110 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + +P +I+ ++ + NALLK+LEEP + +L + L T++SRC Sbjct: 111 LSQSPLEASRLAVVIEGAETMNEAAANALLKSLEEP-GNATLILLAPNIDALIPTLVSRC 169 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 + L+ Q+ L+ E + + L A+GS A+ A Sbjct: 170 QRIPFSRLNAAQMAQVLDQAGYGEILEYPQ-----LIEMAQGSPGCAI-----AHWHQQD 219 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 +S + A L DD L + ++ + L ++ +L Sbjct: 220 SISPDLLQANL----DDLNTPLACLELAQKIDQALDLPSQLW------------LLDYYQ 263 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ + L + +++L + R+ E Sbjct: 264 QLYWRTYGNSVLLHQFE--------------------------KAKEQLRHYAQPRLVWE 297 Query: 351 MTLLRALAFHPRMPLPEPEVPRQ 373 +TLL +P Sbjct: 298 VTLLALAEQQDSQTKTNERLPTN 320 >UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=Vibrio RepID=A7K5T9_VIBSE Length = 320 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 7/181 (3%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L GL RI A L +G+G + ++ L C+ + CG C +C+ + Sbjct: 15 LKVGLESDRIPGALLLQSEQGLGIEKLIEFFSQALLCQN-YASEACGFCHSCQLNQSHNH 73 Query: 88 VDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 DL I K V+ R Q + +++++I+ ++ + NALLKTLE Sbjct: 74 PDLHWIKPEKEGKAITVDQVRACNRLAQESSQLNGYRLFVIEPADSMNESASNALLKTLE 133 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP FLL T + ++L TI SRC + + EQ + ++ AL+ Sbjct: 134 EPGAKCLFLLVTHNQERLLPTIRSRCQHWVVAPPSTEQAMQWMREQGAQQ---VPAYALK 190 Query: 205 L 205 L Sbjct: 191 L 191 >UniRef50_A5IBP2 DNA polymerase III, delta prime subunit n=5 Tax=Legionella RepID=A5IBP2_LEGPC Length = 301 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 L++ RI A LF G+ G + K L C+ PC C +C+ IE+ D+ Sbjct: 14 ALAIRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQN-EPCLTCMDCQMIERFEHPDV 72 Query: 91 IEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 I K++ R L P R K +I+ ++ + NALLK LEEP Sbjct: 73 EWIKPERSGGIIKIDQIRGLQSTAFLTPQRTNHKFIIIESAESMNIAASNALLKILEEPA 132 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHL 175 +H F+L +P T+LSRC Sbjct: 133 QHTIFILLAQQIGNIPPTVLSRCQITQF 160 >UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYA1_9BACE Length = 381 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 156/392 (39%), Gaps = 29/392 (7%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P +F D+VG ++++ L + LS G + +F G G+GK+S A+LLA L Sbjct: 5 PTSFDDIVGHKNLIEFLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLALELMGRDPQVLK 64 Query: 72 PCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 R I++ + + ++ + + + +++ N+ + KV ++DE H Sbjct: 65 --------RVIQENKSTESVLLYNMSINGGKDTAKEVEANLSLGLSGLDRKVIILDEAHD 116 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + L + E P+ V + TTD L T+ SR HL+ L + L Sbjct: 117 MSEAAQETFLVSTEYLPKGVYLFMCTTDSLNLKATLKSRAFTLHLQHLTQADMVSLLTRY 176 Query: 191 LNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + + + + A +Q++A A+G R AL+L + + VS+ + + L D Sbjct: 177 VRDRGLRLQAEASTIQMIAAWADGKPRIALNLIEG--FAPGSAVSSATIKEFIDYLSVDD 234 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L ++ + + + +++I+E G ++ +L I V+ A+ + Sbjct: 235 VLPVLSCL-SGSMTQGLSVISEMKLNG--------SLVPILVEILKVKSGMASFKLSLTD 285 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368 + R+R + + + L+ +L R G+ L++ + P P Sbjct: 286 VH-RIRAQLNGVSVETLTKFI-YLVAALPKLS-----RTGLISAFLQSHTDRSFLSSPPP 338 Query: 369 EVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + T AP + Sbjct: 339 KTEVLQSEMQQKLSAPTQDIAEASRPCAPSIS 370 >UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3H8_9GAMM Length = 329 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 47/330 (14%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 L+ G + HA + +G G GK+ +A LA+ L C CG C +C G D Sbjct: 27 LADGNLPHALVLAGLPGSGKSRLALALARLLLCHAPNGGLNCGKCHSCEMSAAGSHGDFR 86 Query: 92 EIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + + K++ R+++ + G K+ ++ ++ ++ N LLK+LEEP Sbjct: 87 WLQPEEKSRAIKIDQVREVVTFTTKTASFGDRKIVVLAPADAMNTNAANGLLKSLEEPSP 146 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 +L LP T+ SRC + A ++ R L+ + + +LL Sbjct: 147 GTFLILVCDQLHGLPATVRSRCQLIKVPAPSLDSSRAWLDQATGD-----SDESARLL-D 200 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+G A ++ +A D ++ + + A Sbjct: 201 LADGMPMLAEAMYQRA--------------------DGEKLI------------AIRAAC 228 Query: 269 NEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 AA + + A+ Q++ A G+ A + + + + Sbjct: 229 RGLAAGKLSANQAATMLAEAPMDEALEQMARTARGSIKALDKENLNGQTGRC----LYEF 284 Query: 329 YQTLLIGRKELPY--APDRRMGVEMTLLRA 356 + ++ + P+R++ E+ L + Sbjct: 285 LDEVGKIQRAVRGGANPNRQLLTEVLLEKL 314 >UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia intestinalis RepID=A8B3E2_GIALA Length = 321 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 29/259 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VV E ++ A+ + GR+ H +F G G GKT++ + L L Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPH-MIFYGKPGTGKTTLIKALMNEL- 59 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--------QYAP 115 ++E++A+ + V+ R + Q + Sbjct: 60 ------------------FGDAVSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSS 101 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + +FK+ ++DE +S + +L + +E +H +F L P+KL ILSRC F Sbjct: 102 SATKFKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRF 161 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV-ST 234 + E LE I + E + P AL + +G LR A+++ + ++ + Sbjct: 162 LPVPRESCLLMLEKIADAEGMQMAPGALAAIHAVTDGDLRQAINVLQSLHLMTEKELATA 221 Query: 235 QAVSAMLGTLDDDQALSLV 253 V ++ L+ Sbjct: 222 DDVYKLVAKPHPALGRELL 240 >UniRef50_D0WK13 Putative DNA polymerase III, delta' subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WK13_9ACTO Length = 460 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 25/247 (10%) Query: 15 FADVVGQEHVLTALANGLSLGR-------------IHHAYLFSGTRGVGKTSIARLLAKG 61 F ++VGQ V L + R + A+L +G G G++ AR A Sbjct: 4 FDELVGQRAVRAQLEKAAAAARELAGKTAVGADSAMAQAWLVTGPPGSGRSVAARAFAAA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARG 118 L C CG C C + +G+ D+ + A+ VE TR+L+ +P G Sbjct: 64 LECTGPEPG--CGQCHACHTVMEGKHPDVESV--ATHGVFITVERTRELVGRSYVSPGSG 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++V +I++ + + N LLK +EEPP ++L T + + TI SRC + L Sbjct: 120 PWRVVVIEDADRMLERTTNVLLKAIEEPPPFTVWMLCTPSSEDVMTTIRSRCREVSLAVP 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L P A AA+ + A +L A A+ + Sbjct: 180 SPQDVADLLVR-----RDGVPPERALDAALAAQSHVGRARALATDAEAARERAYILTETL 234 Query: 239 AMLGTLD 245 ++ G D Sbjct: 235 SIRGAGD 241 Score = 55.4 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 1/79 (1%) Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK 337 + LV++L L + VQL A + R+ E+A + + R Sbjct: 379 LDRALVDLLSLYRDVLTVQL-GADVALVNRDFADRIAEVAASTSAEQSIRRMDAISQART 437 Query: 338 ELPYAPDRRMGVEMTLLRA 356 L + +E ++ Sbjct: 438 RLAGNVAPLLALEAMMVGL 456 >UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonproteobacteria RepID=A7ZAZ1_CAMC1 Length = 394 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 52/303 (17%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LA +RP+ ++ GQ+ V TA ++ +I H+ +F G G GKTS AR +A Sbjct: 1 MS--SLALMFRPKNLDEICGQKAVKTAFLKFIATSKIPHS-IFYGPAGCGKTSFARAVA- 56 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL---DNVQYAPAR 117 G D E D K++D R +L +N P Sbjct: 57 -----------------------SGANYDFYEFDG-GNLKIDDFRKILKNYENALNKPL- 91 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 + IDE+H LS+ ALL +E + A+T+ L I SR + F Sbjct: 92 -----FFIDEIHRLSKTQQEALLIPMEN--YKALVIGASTENPFFTLSSGIRSRSMLFEF 144 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L L I + + + A + L +++ G R L+L + A+ D VS + Sbjct: 145 RPLSSSDFEELLAKIKEQISFSIDEDAKEYLFKSSGGDARAMLNLLEFAVTL-DENVSIE 203 Query: 236 AVSAM------LGTLDDDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALLVEM 285 + + G +DD L A ++ ++ V+ + G + + M Sbjct: 204 NLKTLRQNALKEGAKEDDTHYELASAFIKSLRGSDENAVIYYLARLIDSGESADFIARRM 263 Query: 286 LGL 288 Sbjct: 264 AIF 266 >UniRef50_D1REQ3 Putative DNA polymerase III delta prime subunit n=1 Tax=Legionella longbeachae D-4968 RepID=D1REQ3_LEGLO Length = 304 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 114/338 (33%), Gaps = 73/338 (21%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARL-----LAKGLNCETGITATPCGVCDNCREIEQG 85 GR+ A LF VG A + +K + C+ + PCG C +CR Sbjct: 21 AWKNGRMPQAMLF-----VGSLDCALIDFIRRFSKFVFCK--METKPCGECIDCRMALCA 73 Query: 86 RFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL I R K++ R+L D P R ++ +I+ ++ + N+LLK Sbjct: 74 EHPDLNWIKPEKRGGSIKIDTIRELHDYSYLTPQRANHRLIVIESAERMNISAANSLLKI 133 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP +H+ FLL + TILSRC H + + L+ E E Sbjct: 134 LEEPAQHILFLLVAQQLSTVLPTILSRCQIMHFA--SYVDLSNLLQ---LGERYPQESEQ 188 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 ++ A + D I+ + V+A Sbjct: 189 AVII--------NQAEFVLDGLISVIKEKTHPCIVAA----------------------- 217 Query: 263 RVMALINEAAARGIEWEAL-LVEMLGLLHRIAMVQLSPAALGNDMAA---IELRMRELAR 318 +W + +L L+ + N + +++ LA Sbjct: 218 --------------QWSQFEMNTLLWFLY--LVYSQIQIIQINGIINAGPATQQLQSLAT 261 Query: 319 TIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLL 354 + P I + + +L + ++ + +E LL Sbjct: 262 LLTPIIIFAQIDRINALQMKLSHNINVNQTLALEDLLL 299 >UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB Length = 456 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 146/373 (39%), Gaps = 56/373 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ+ +L A L + GR+ H+ + G G GKT++A LLA Sbjct: 24 PLAERMRPRTLDEMVGQKRLLAADSALRRAVESGRV-HSMILWGPPGCGKTTLALLLA-- 80 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 A + I A + + D R +L A GR Sbjct: 81 ----HYADAEF-------KAIS------------AVLSGLPDVRQVLAEAAQRFASGRRT 117 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 V +DEVH ++ +A L +E + F+ ATT+ +L +LSRC L+ + Sbjct: 118 VLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENPSFELNSALLSRCRVHVLEGVS 175 Query: 180 VEQIRHQLEHIL-------NEEHIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGD 229 + I L+ L +E I +L +A AA+G +R AL+L + + Sbjct: 176 PQDIVEALQRALHDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEG 235 Query: 230 GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 G+++ + + +L G DQ +L +++ +N + + + G + Sbjct: 236 GEITPRTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPA 295 Query: 280 ALLVEML-GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 L + + I + ++ + I R+ + + LY + Sbjct: 296 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL--ASTAKSN 353 Query: 339 LPYAPDRRMGVEM 351 YA + E+ Sbjct: 354 AGYAAFNQAKAEV 366 >UniRef50_B9ZR24 DNA-directed DNA polymerase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZR24_9GAMM Length = 324 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 10/228 (4%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-CGVCDNCR 80 E + L GR+ L +G+ G+GKT + + + L C+ P CG C+ CR Sbjct: 9 EPIRKRLVRRGRDGRLPSGILITGSPGLGKTLLTTSVVQSLLCQRASGNEPACGECNACR 68 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +E G ++ ++ A V+ RD + + + + G + +I L+ ++ N Sbjct: 69 SLEGGVHPEVRLLEPAEPGKDILVDAVRDATEFLTLSGSGGALRALIIRPADALNVNAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP L P LP TI SRC Q + + +EQ+ L ++ Sbjct: 129 ALLKTLEEPPAGATLFLEAARPASLPATIRSRCQQVDVVSPSIEQVHEWLAAETDQHERV 188 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 E A L A + + A + Q ++ +L D Sbjct: 189 AEAYAASL------NRPLLAREILTDSAALEAWETDRQILTGLLNAAD 230 >UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A0RRQ8_CAMFF Length = 397 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 48/297 (16%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L+ +RP D+VGQ+ ++ + + +I H+ LF G G GKT++A+++AK +N E Sbjct: 3 LSNDFRPNNINDMVGQKDIVELFSKFIKSKKIPHS-LFFGATGCGKTTMAKIIAKQMNYE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL---DNVQYAPARGRFKV 122 E+D A K ED R ++ + Y P + Sbjct: 62 ------------------------FFELDGA-NLKSEDIRKIISKFETTLYKPL-----I 91 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT--ILSRCLQFHLKALDV 180 + IDE H LS+ LL +E+ + ATT+ K V+ I SR + F K L Sbjct: 92 F-IDEFHRLSKTQQETLLIPMEK--GKCIVMGATTENPKFVVSSGIRSRMMIFEFKPLSH 148 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-------GQVS 233 +++ L + N A L ++ G R L+L + A+++ + Sbjct: 149 DELTILLTKVQNVIKFEITNEAKDYLINSSGGDARSLLNLLEFALSADKSIGLNILKTLR 208 Query: 234 TQAVSAMLGTLD--DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + VS + D + +L++++ ++ + + + G E L M+ Sbjct: 209 SHRVSEGVSNSDTHYELTSALIKSLRGSDIDASIYYLARLIQGGEEPAFLARRMVIF 265 >UniRef50_B1Y019 DNA polymerase III, delta prime subunit n=3 Tax=Proteobacteria RepID=B1Y019_LEPCP Length = 360 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 82/193 (42%), Gaps = 30/193 (15%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP----CGVCDNCR 80 LA L+ R HA L G GVG+ +A LA+ CET P CG C +C Sbjct: 28 AEPLAQTLATQR-SHALLVHGPTGVGQFEMALALARSWLCETPAGERPAGLACGRCGSCH 86 Query: 81 EIEQGRFVDLIEI-------------------------DAASRTKVEDTRDLLDNVQYAP 115 +++ DL + + KVE R ++ + Sbjct: 87 LVDEHSHPDLRLLVPEAMRAQVGLDADDAASDDDGKKRKPSREIKVEQIRAAINFSELTA 146 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 R KV ++ L+ + NALLKTLEEPP ++F+LA+ PQ LP T+ SRC L Sbjct: 147 GRASLKVLVVYPAEALNTVAANALLKTLEEPPGTLRFVLASAAPQALPATVRSRCQSVPL 206 Query: 176 KALDVEQIRHQLE 188 + +Q LE Sbjct: 207 RPPPADQALAWLE 219 >UniRef50_Q04WF8 DNA polymerase III gamma and tau subunits n=5 Tax=Leptospira RepID=Q04WF8_LEPBJ Length = 312 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%) Query: 16 ADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 D++GQE LT L S I +F G G GK S + K + C G + CG Sbjct: 9 DDILGQEVALTFLKRYTSKPETIPPLLIFHGPDGTGKESTSERFIKNVLCFEGTS---CG 65 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTKV-----ED------TRDLLD-NVQYAPARGRFKV 122 C +C+ + D I R K+ ED R L+ + Y P +F+ Sbjct: 66 TCASCKAFMRNSHPDYIRF-PEDRGKIIAIGSEDNPEEFTIRWLIRSRLNYRPHLSKFRF 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + + ++ + ALLK+LEE P KF+ + L TI+SR + + L+ Sbjct: 125 IVFPDASLIGNEAETALLKSLEEAPSFSKFIFIVNNIDTLKETIISRAICVPFQYLNQND 184 Query: 183 IRHQLEHILNEEHIA 197 L+ I ++ Sbjct: 185 ----LKKINTNLGLS 195 >UniRef50_B8HXU0 DNA polymerase III, delta prime subunit n=10 Tax=Cyanobacteria RepID=B8HXU0_CYAP4 Length = 325 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 119/365 (32%), Gaps = 72/365 (19%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++GQ + L ++ RI AYLF+G GVG+ AR + + + + Sbjct: 8 FDALIGQPQAVEILTQAIAKQRIAPAYLFAGPDGVGRGLAARQFLELILRSSTSSPQ--- 64 Query: 75 VCDNCREIEQGRFVDLIEIDAA------------------------SRTKVEDTRDLLDN 110 R+ DL+ I+ + ++E R++ Sbjct: 65 -----RQPSFQNHPDLLWIEPTYTVQGKLVTLSELQTKGEQPPKSRPQIRLEQVREISRF 119 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 V AP + ++ + ++ + N LLKTLEEP +L L T++SRC Sbjct: 120 VSRAPLEALRSLVVLQQAETMNEAAANGLLKTLEEP-GQATLILIAPSELSLLPTLVSRC 178 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 + L ++ ++ E + H + + A+GS A++ + Sbjct: 179 QRVPFYRLPPAELAQVIQQTPYAELLTHPQ-----ILQMAQGSPGAAINHWQKLQTL--- 230 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 L + + + L + + ++ E+ L ++ L Sbjct: 231 ---------------PADILQACNPLPSS-PRAALELARQISQT-LDLESQLW-LVDYLQ 272 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ Q ++ L R+ L ++ E Sbjct: 273 QLCWQQAGGGGHNGQAGRSHGWLQ-------------VLHRLEQARQHLLNYAQPQLVWE 319 Query: 351 MTLLR 355 +TLL Sbjct: 320 VTLLE 324 >UniRef50_C1A9U0 DNA polymerase III delta' subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U0_GEMAT Length = 363 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 94/248 (37%), Gaps = 47/248 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-- 70 +F + G + L S GR+ + LF G RGVGK + L + L C+ T Sbjct: 1 MSFRPLYGHHPLRQRLTAAASDGRLPASLLFQGRRGVGKQRLGLWLGQFLLCDRATTEGL 60 Query: 71 -TPCGVCDNCREIEQGRFVDLIEI-------DAASRTK---------------------- 100 PCG C +CR E+G DL D + T Sbjct: 61 REPCGACQHCRYAERGVHPDLHWFFPRPRLKDGDASTDDVKADVAEAVAERMGDEGLWSP 120 Query: 101 --------VEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----SRHSFNALLKTLEEPP 147 V R L+ PA R V+++ + + + + NA LK LEEPP Sbjct: 121 PPGTEGLYVATVRALVHMASLRPAMARRAVFVVGDAERMVSQEGADQAANAFLKLLEEPP 180 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 LL T++P L TI SR + + L + L + E A PR +LLA Sbjct: 181 NGTTLLLTTSEPGALLPTIKSRVVSVRVPPLTPADMDAFLSDAVVERKFARTPRE-ELLA 239 Query: 208 RAAEGSLR 215 R A G+ Sbjct: 240 R-ANGAPG 246 >UniRef50_C2BUI4 DNA polymerase III, delta prime subunit n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUI4_9ACTO Length = 438 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 63/369 (17%), Positives = 127/369 (34%), Gaps = 55/369 (14%) Query: 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS- 97 H++L G G G+++ A+ A L CE CG+C CR++ QG D+ + Sbjct: 69 HSWLVVGPPGSGRSTAAKAFAAALECEDTDNPG-CGICPACRDVRQGTHADVSVLTTEMV 127 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 K +D + L+ P RG + + +I++ +S +S N LLK++EEPPE ++L Sbjct: 128 EIKFDDVKALVQQAYRRPVRGEWNIIIIEDYDRMSEYSSNLLLKSIEEPPERTVWVLCAP 187 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 + TI SR L + L + + P +A AAE + A Sbjct: 188 SAADVLSTIRSRTRLVQLSLPSPAAVAELLVR----QDASISPELAAEVAAAAESHVGRA 243 Query: 218 LSLTDQAIASGDG------------------------QVSTQAVSAMLGTLDDDQALSLV 253 +L + + ++ + + G D ++ ++ Sbjct: 244 RALAYEPQLREERLGMLRMISQMHTTVEAMWTAAALVKLVDKQAETLRGANDREERAKVL 303 Query: 254 EAM----------VEANGERVMALI--------NEAAARGIE-WEALLVEMLGLLHRIAM 294 EA + + + + A + W+ +L ++ G + + Sbjct: 304 EAFGLAADTPDSRLPRDVKSALRGAKLSETDAHRRARRASFDTWDRVLGDISGFYRDVML 363 Query: 295 VQLS-PAALGNDMAAIELRMRELARTI-----PPTDIQLYYQTLLIGRKELPYAPDRRMG 348 Q+ N + + + + R+ L + + Sbjct: 364 AQVGSAQPRINLSRPAGELIDAYVARVGIGPQSLAQTTSRLEAIRKARRRLMGNGNIALD 423 Query: 349 VEMTLLRAL 357 +E + + Sbjct: 424 IEALCVELV 432 >UniRef50_D1BLN8 DNA polymerase III gamma/tau subunits-like protein n=3 Tax=Veillonella RepID=D1BLN8_VEIPT Length = 346 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 126/351 (35%), Gaps = 54/351 (15%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++GQ+ + L+ +S + H+ LF G G+GK +A L L + + P G Sbjct: 4 FDSIIGQDSIKAHLSELVSRNALPHSLLFYGESGLGKLDMAIGLT-SLLLGRQVFSQPKG 62 Query: 75 VC-------------DNCREIEQGRFV------DLIEIDAASRT-KVEDTRDLLDNVQYA 114 D + IE D I T KVE LL + + Sbjct: 63 ESYLAEVKEARLANGDTEKRIEAEGLPIYMDKGDAFWIRPMKTTLKVEQWYSLLQD-HLS 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 A +V ++++ H + NA+LKT+EEPPE V F++ T + TI+SRC+ Sbjct: 122 VAGNGNRVVIVEDFHTANAVMANAMLKTIEEPPEQVYFIIITNKINTVLPTIISRCMGVG 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 ++DV+ I +L I + L A G+ L ++ G ++ Sbjct: 182 FNSVDVDTI----RTVLVARGITGDIEQALL---AGHGNP----QLVEKLATQGRIEMLE 230 Query: 235 QAVSAMLGTLDDDQALSLV----EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 AV M + + S++ E++ N +M + + Sbjct: 231 LAVKVMDILAFETRWFSMISLACESLSRENLTELMHWLRLIS-----------------R 273 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 + +++ + + ++ L + L + L Sbjct: 274 DMMALKMGAQDTQLQVPMYKTQLLRLLPRWSMQVLSEVITETLQAERALRL 324 >UniRef50_Q12AK7 DNA-directed DNA polymerase n=5 Tax=Comamonadaceae RepID=Q12AK7_POLSJ Length = 379 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 111/313 (35%), Gaps = 64/313 (20%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI------ 91 HA+L SG G+G+ +A+ LA+ CE CG C +C ++ DL Sbjct: 35 GHAWLLSGPSGLGQFDLAQALARAWLCEQPTPQGACGHCGSCHAVDVHTHADLCLLVPET 94 Query: 92 ---------------EID-----AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 E+D + KV+ R+ + Q+ +RG KV L+ + Sbjct: 95 LSLALGWPLDEKTQDELDSKKRKPSKEIKVDAAREAVSFTQFTRSRGTTKVVLVFPAERM 154 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N LLKTLEEPP VKF+LAT +L TI SRCL + D Q L+ Sbjct: 155 NHITANTLLKTLEEPPGPVKFILATDAAHQLLPTIRSRCLGHTMLWPDFAQASAWLQQEA 214 Query: 192 NEEH-------------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + E LQ L AA G DAL+ + + Sbjct: 215 ASPGEGESNPKKGGPAAVPPEAADLQTLLVAAGGRPADALAWAQNSAPGEAAR------- 267 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L +AM + + ++ + L H + V++ Sbjct: 268 ---------HWQGLPKAMARGDASVLADW---------SPAQVVDALQKLCHDVLAVRMG 309 Query: 299 PAALGNDMAAIEL 311 + + + Sbjct: 310 ASPRFFNAKDLPE 322 >UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus fumigatus RepID=B0Y2N9_ASPFC Length = 389 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 31/243 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VVGQ+ L+ L + + + H LF G G GKTS LA+ L Sbjct: 19 LPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPH-LLFHGPPGTGKTSTILALARQLY 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED--TRDLLDNVQYAPA----- 116 + ++ ++E++A+ V D R + P Sbjct: 78 GDADMSQM------------------VLELNASDDRSVHDVQIR-IKAFASTRPIFKVPL 118 Query: 117 -RGRF---KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + K+ ++DE + + AL + +E+ +F + T + KL ++SRC + Sbjct: 119 RESPYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCAR 178 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 L IR L + E+I P AL+ L+ + G +R AL++ + + Sbjct: 179 LRFPPLRPSAIRTLLLQVATTENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWS 238 Query: 233 STQ 235 + Sbjct: 239 DDE 241 >UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E8800C Length = 318 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 110/309 (35%), Gaps = 45/309 (14%) Query: 58 LAK----GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDL 107 A+ L C+ + CG CDNC + D +D V+ R L Sbjct: 38 FAQNLCHALLCQNRLADDACGACDNCLWVNNHSHPDFFSVDEEGNETTDKLIPVKVIRSL 97 Query: 108 LDNVQYAPARGR-FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 + + + K+ I H +++ S NALLK +EEPP +L+T+ + T+ Sbjct: 98 KNFFELTSHQSHGKKIAYIARAHRMNKESSNALLKIVEEPPNDCLIILSTSQLDAIIPTV 157 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SR HL E L + ++ + L Sbjct: 158 KSRSRLVHLHQPVQEDGLAYLHTL----NLDMDASTLA---------------------F 192 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 G+ V+ A S+V A+ E A+ N+ G+ W L+ M Sbjct: 193 FGNSPVAAINERDTF-----AHAKSIVRALSEGEALNPDAIKNDWLDYGLAW--LVTVMQ 245 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 ++ + + +L+ + + +++LA ++ ++ + L + ++ Sbjct: 246 KWIYDLLLFKLTQE--ISYFPGEKSALKKLAGQSSLPNMLVFQKKLNEIKAYASKPVNKE 303 Query: 347 MGVEMTLLR 355 + +E+ ++ Sbjct: 304 INMEVMMME 312 >UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F0_COPC7 Length = 316 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 119/315 (37%), Gaps = 43/315 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M ++V K+RPQ D+VG + L G H + SG G+GKT+ LA Sbjct: 1 MPFRV--EKYRPQVLDDIVGNTDTIERLKVIARDGNCPH-LIISGMPGIGKTTSIHCLAH 57 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-----LLDNVQYAP 115 L + + + D ++A+ + ++ R+ V P Sbjct: 58 QLLGDAYKEG-----------VLELNASD-ERLNASVDSGIDVVRNKIKAFAQKKVTLPP 105 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GR K+ ++DE ++ + AL +T+E +F LA K+ I SRC Sbjct: 106 --GRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRY 163 Query: 176 KALDVEQIRHQLEHILNEE--------------------HIAHEPRALQLLARAAEGSLR 215 L +++ +L I E + + L L AEG +R Sbjct: 164 AKLRDQEVLKRLLEICEMEKVCSGFFYRLPVKGQYLYERQVQYNDDGLTALIFTAEGDMR 223 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 A++ Q+ SG G VS V + S++ A ++ + + ++E +G Sbjct: 224 QAINNL-QSTHSGFGFVSADNVFKVCDQPHPIVVQSMIRACLKGEIDPALEKLHELWDQG 282 Query: 276 IEWEALLVEMLGLLH 290 ++V + ++ Sbjct: 283 YSAVDIVVTLFRVVK 297 >UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RG91_METVM Length = 544 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 120/306 (39%), Gaps = 44/306 (14%) Query: 52 TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDN 110 T+ A LA+ L E + +E++A+ ++ R + D Sbjct: 278 TTAALCLARDLFGENWRD-------------------NFLELNASDERGIDVIRTKVKDF 318 Query: 111 VQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 + P FK+ +DE L+ + NAL +T+E+ + +F+L+ P K+ I SR Sbjct: 319 ARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQSR 378 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 C F L E I +L+ I +E + L + +EG +R A+++ Q A+ Sbjct: 379 CAIFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVL-QTAAALS 437 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGL 288 + + V + ++ ++E + L+ + G+ E +L +M Sbjct: 438 DVIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDILNQM--- 494 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 I N++ E + ELA I TD ++ + + + + + Sbjct: 495 FREI-----------NNLDIDERKKVELADAIGETD----FRIVEGANERIQLSA---LL 536 Query: 349 VEMTLL 354 +M L+ Sbjct: 537 AKMALM 542 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 + K+RP+T D+VGQ+ ++ L + + H LFSG GVGK Sbjct: 3 KPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPH-LLFSGPPGVGK 49 >UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA20_CARHZ Length = 444 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 124/313 (39%), Gaps = 57/313 (18%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ + +GQEH+L L + R+ + +F G G GKT++AR++A Sbjct: 16 PLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLG-SLIFYGPPGTGKTTLARIIAST 74 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRF 120 + G I+A + V + R+++ + G Sbjct: 75 --------------------TKSG----FESINAVTS-GVGEIREVIKKAKEREKYYGER 109 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V IDE+H ++ +ALL +E + + ATT+ ++ +LSR F K L Sbjct: 110 TVLFIDEIHRFNKAQQDALLPEVE--AGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPL 167 Query: 179 DVEQIRHQLEHIL-NEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---- 227 + E IR + L ++E + AL L A G R AL+ + A+ + Sbjct: 168 EPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIELAVLTTPPD 227 Query: 228 --GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 G +++ + + + G D + ++++ ++ + + + G Sbjct: 228 EDGVRKITVEIIEQSMQKKAIVYDKEGDNHYDTISAFIKSLRGSDPDAAVYYLARMLEAG 287 Query: 276 IEWEALLVEMLGL 288 + + ++ Sbjct: 288 EDPRFIARRLIVH 300 >UniRef50_B3QKH2 DNA polymerase III subunit delta' n=14 Tax=Bradyrhizobiaceae RepID=B3QKH2_RHOPT Length = 351 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 22/277 (7%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ ++ G AL + GRI HA+L G +G+GK ++A +A+ + + Sbjct: 20 PRETTELYGHHAAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHREPQSD 79 Query: 72 PCGVCDN---------CREIEQGRFVDLIEIDAASR--------TKVEDTRDLLDNVQYA 114 + R I L+ ++ + V+++R+ + Sbjct: 80 AVQSAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDKGVLRNVITVDESRETISFFGAT 139 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 A ++V ++D V L+ +S NALLK +EEPP+ FLL + P ++ TI SRC + Sbjct: 140 AAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARVLPTIQSRCRKLM 199 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L+ L + + + + L A A+EGS+ AL L + +T Sbjct: 200 LRPLATADVIA---AAADAAGVERDDPQLGEAAAASEGSVARALMLMGGGALTLQQ--TT 254 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 A+ L +D +L +A+ + + A ++ Sbjct: 255 TALLDSLPNVDPRALHALGDAIGGTDRATLAAFVDGV 291 >UniRef50_A8TUR1 ATPase involved in DNA replication n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUR1_9PROT Length = 384 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 131/354 (37%), Gaps = 41/354 (11%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC------------ 64 D++G E + S GR+ HA+L +G G+GK ++A +A+ + Sbjct: 19 DLIGHEAAEALILEAWSSGRMPHAWLIAGPPGIGKATLAYRIARFVLSGGGAGADDSLFG 78 Query: 65 --ETGITATP-CGVCDNCREIEQGRFVDLIEI-----DAASRT---KVEDTRDLLDNVQY 113 E T+ R + DL + D + + KVE+ R ++++ Sbjct: 79 MSEAPPTSMAIAPDTRVARMVAAESHPDLKILRRQMTDKGTMSAVVKVEEVRAFEASLRF 138 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 A G ++V ++DE ++R++ NALLK LEEPP + LL + + T SRC + Sbjct: 139 KSAEGGWRVAIVDEADRMNRNAENALLKILEEPPVNTLILLISNALNSMLPTTRSRCRRL 198 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 LK L + L + +L R AEGS+ A++L D G Sbjct: 199 VLKPLPDPLVLDLLRRA----RPSVNEADASVLVRLAEGSIGRAIALAD-----AGGADL 249 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL---LVEMLGLLH 290 + V+ ++G L + +V +A + E +A + ML + Sbjct: 250 YRGVAGLMGHLPVRR-----GDLVPGETLHALATAWGRRPKAGEADAFTAGMELMLWWID 304 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 R L + R + + + L A + Sbjct: 305 RAVRSSADATGLQEVIPGDLAVGRRWVASAGVEPVFRRRAEVERLI-HLERAVN 357 >UniRef50_Q5UQ72 Putative replication factor C small subunit L510 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS4_MIMIV Length = 363 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 121/319 (37%), Gaps = 63/319 (19%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP+ D+ +++L N G + H +LF G G GKTS +LA G Sbjct: 12 KYRPKKLEDITQSQNLLDLFKNSTKKGEMTH-FLFYGPPGTGKTSA--ILAMG------- 61 Query: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRD-LLDNVQYAPARGR------- 119 REI + F + +IE +A+ + R+ + + + A + Sbjct: 62 -----------REIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTII 110 Query: 120 --FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 +K+ ++DE ++ + +AL +E+ +F K+ I SRC + K Sbjct: 111 PSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKK 170 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ------ 231 L E + +L I +E + L + + G +R A+ L + + + Sbjct: 171 LSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKNLTKK 230 Query: 232 ------------------------VSTQAVSAMLGTLDDDQALSLVEAMVE-ANGERVMA 266 +S + V + ++ D+A +++ ++ N V Sbjct: 231 LKDMTLLELKTILFMTKKSSITSTISEEDVYEISASITLDKAKGIIDDTIDCNNIVEVSN 290 Query: 267 LINEAAARGIEWEALLVEM 285 L + A G + +L ++ Sbjct: 291 LSKKIIAMGFPIDNILTQL 309 >UniRef50_B8ELC5 AAA ATPase n=2 Tax=Beijerinckiaceae RepID=B8ELC5_METSB Length = 364 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 71/331 (21%), Positives = 120/331 (36%), Gaps = 29/331 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--- 68 P+ +D +G E L + G++ HA L G GVGK ++A LA+ L Sbjct: 24 PRAASDFIGHEEAEAELLRACAAGQLPHAILIGGPSGVGKATLAWRLARFLLVNREPAAA 83 Query: 69 -----TATPCGVCDNCREIEQGRFVDLIEIDA---------ASRTKVEDTRDLLDNVQYA 114 R+ DL + A+ +VED R + A Sbjct: 84 AAKAQDLATEQDHPAARQALSLAHPDLFVLRREWNEKTKKLATEIRVEDVRRAIHMFHQA 143 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 ++V ++D L+ NALLK +EEPP F++ P ++ TI SRC + Sbjct: 144 AGGQGYRVAIVDSAEDLNASGANALLKLIEEPPPRCVFIIIAHRPGRVLATIRSRCRKLM 203 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 LK L ++ + + A +P+ +AR GSL L L DG++ Sbjct: 204 LKPLQENEVARIVATLGPPWSQAPKPQLQDAIAR-TRGSLHGTLRLLSGRGLELDGKLR- 261 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + L +D +L E + + + A +W + + A Sbjct: 262 -RMLGELPKVDWRATHALAEEVAPRDNADDY---DALLAAVYDW------LEARVRNGAG 311 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDI 325 L A + ++ E A+ ++ Sbjct: 312 DSLVRPGALAPYAEVWEKVTEAAQQTEALNL 342 >UniRef50_B7KMR1 DNA polymerase III delta prime subunit n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMR1_CYAP7 Length = 306 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 110/274 (40%), Gaps = 54/274 (19%) Query: 16 ADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + GQ+ T + I AYLF+G G+GK + A+LLA+ + IT Sbjct: 17 NQIKGQKVAHTLFRHLFLSPYIPLAPAYLFTGIEGIGKITFAKLLAQCILNTDNIT---- 72 Query: 74 GVCDNCREIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDN 110 + +++ I+ A ++E + ++ Sbjct: 73 ------------NYPNILWIEPTYLQQGELISLSIAKRENLEFKIAPIIRIEQVKQIIQF 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + +P + +I++ L+ + NALLK+LEEP F+L +++P+KL T++SRC Sbjct: 121 ISNSPISNERLLVIIEKADCLNPIAANALLKSLEEP-GKATFILTSSNPEKLLATVISRC 179 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+ IR L I++E + A+GS A+ + Q I S Sbjct: 180 QIVPFFPLNDSNIREILNK-CGYADISNE------VIELAQGSPGKAI-IYHQLIDSIPD 231 Query: 231 QV----STQAVSAMLGTLDDDQALSLVEAMVEAN 260 ++ VS L + SL + ++ A+ Sbjct: 232 ELLNCPKIGKVSNALQLAKEMTKYSLEQQLLLAD 265 >UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=C3WFU7_FUSMR Length = 303 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 2/167 (1%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 D++ E V N L L + YLF G+ A AKGL CET CG C Sbjct: 4 DIISNEEVKEFFRNELKLKKDSGTYLFYGSDMSLLMEFALHFAKGLCCETLE-GDFCGEC 62 Query: 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + C+ I++ + DL +D KV++ R+L + G K+++I ++ + + + Sbjct: 63 NICKRIDKMLYSDLEILDNPDGLKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKEAS 122 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 NALLK +EEP + F+L T+ + TI SR + +K E++ Sbjct: 123 NALLKLIEEPNKGSFFILLNTNLN-ILPTIKSRSILVKVKKRTAEEL 168 >UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FA0C Length = 298 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 26/258 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + + +HHA L G+GK + LA L C CG C +C + Sbjct: 13 TQFMRHA-QANTLHHAILLHAKPGMGKHAYVHQLADDLLCHHLKFGHACGQCQSCLLNQA 71 Query: 85 GRFVDLIEIDAASRTKVEDTRD----LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 D I + + V + R+ L ++ Q + K+ +I+ ++ + NALL Sbjct: 72 SSHPDRYVIASDKQISVNEIREALTKLQEHAQLR----QRKILIIEHADTMTESAANALL 127 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE- 199 KTLEEP + LL +D Q+L TILSRC + L ++ IR L EH Sbjct: 128 KTLEEPSLNTFLLLTVSDIQRLLPTILSRCEKNTLIIPSLDMIRAWL-----NEHYQITA 182 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA--LSLVEAMV 257 L + A S+ +AL+ D +++ A LG + Q L + Sbjct: 183 ADDLMRAYQFAPLSIVNALT--------EDTEMNYNAFKQDLGAIKQGQLNSLEFAQKWH 234 Query: 258 EANGERVMALINEAAARG 275 + + + + Sbjct: 235 SQ-AHQSLGWLQLMLQQK 251 >UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KYK3_9ALVE Length = 277 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 31/252 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP ++ Q V+ AL + G + H LF G G GKTS LA+ L Sbjct: 28 KYRPARVEELAHQPEVVGALKEAVGTGNLPH-LLFYGPPGNGKTSAILALARELFGPELW 86 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ------YAPARGR--- 119 ++E++A+ ++ RD + AP G+ Sbjct: 87 RDR------------------VLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAP 128 Query: 120 -FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE +++ + AL + +E + +F + ++ + SRC +F + L Sbjct: 129 PFKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPL 188 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA--SGDGQVSTQA 236 E R +LE+I N E + A++ L + G LR A++ + S D ++ + Sbjct: 189 SDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSCLSDDEAITVEE 248 Query: 237 VSAMLGTLDDDQ 248 + G D Sbjct: 249 ILEASGFADSSY 260 >UniRef50_A9INK7 DNA polymerase III, delta' subunit n=11 Tax=Burkholderiales RepID=A9INK7_BORPD Length = 368 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 70/368 (19%), Positives = 116/368 (31%), Gaps = 63/368 (17%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q+ + LA R HA+L G G+GK A A L CE+ CG C C Sbjct: 28 QDIARSWLA---ERERFAHAWLVHGVAGIGKLQFASAAAASLLCESPRDHLACGQCPACA 84 Query: 81 EIEQGRFVDLIEIDA-------------------------------ASRTKVEDTRDLLD 109 + G DL I + +++ R L Sbjct: 85 WVASGNHPDLRRIRPEAIALQEGAEAAEGAEEAEPAGGGAAAKRAPSKEIRIDQIRTLES 144 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 A RG ++V L+ H L+ S NALLK LEEPP H FLL P +L T++SR Sbjct: 145 WFNTATHRGGWRVALLYPAHALNAISANALLKVLEEPPPHTVFLLVADAPDRLLPTLVSR 204 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 C + L + L+ + + + A A + Sbjct: 205 CRRL---PLPAPEAAQALQWLQEQ-------------------GVDGATDWLAAAGGAPL 242 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + LV + + + AL + + + L Sbjct: 243 AALRLAQGGQ---QACPEWLAQLVTPLAQGQTPDIGALSEGL--EKLTPPEWIDALQRLY 297 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + + + A+ + + A + + L R+ + + ++ Sbjct: 298 TDLMLASA--SQPVRYFPALAKPVGQAAARANAVRLAEAARWLTQQRRLATHPLNAKLLA 355 Query: 350 EMTLLRAL 357 TL R + Sbjct: 356 HATLQRVV 363 >UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRY4_METLZ Length = 332 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 122/337 (36%), Gaps = 23/337 (6%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP +F +V+GQ + L+ +LG + H L G G GK+S + ++ E+ Sbjct: 6 KYRPTSFEEVIGQNSPVKQLSAYAALGNLPH-LLVIGRSGCGKSSALEVFSRRFYTESAA 64 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDA-----ASRTKV-EDTRDLLD-NVQYAPARGRFK 121 T V QG E D V + + ++ + P F+ Sbjct: 65 ENT--TVLPVSVMFSQG-HTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSAPFR 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + + D L++ + AL + +E+ + +F+ T+ + I SRC+ + +D Sbjct: 122 LIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPIDEA 181 Query: 182 QIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +R L+H+L +E + L +L + G LR AL + +S + ++ Sbjct: 182 TMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKALVWLELMALHDVSDLS-ELMTT 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLS 298 G L L A + ++ G+ +L + R + ++ Sbjct: 241 ETGELSAAAVL----AAGRGDSAAAQQIVENLQIEYGMNAGDVLRSL----RRCLIGNIT 292 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 P A + + LL G Sbjct: 293 PDLALLFSKAEITLVEGQNEYLQMNAFTAELTELLSG 329 >UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusobacteriaceae RepID=C7NB61_LEPBD Length = 409 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 128/299 (42%), Gaps = 43/299 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA ++RP++ D GQ+ ++ L + G +A +F G G GKT++A +++ Sbjct: 12 KPLAFRYRPKSLDDFYGQKRLVGENGILRKIIERGNFMNA-IFWGAPGTGKTTLAEIISN 70 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGR 119 +N E A + V D +++ + G+ Sbjct: 71 KMNYH-------------------------YEYLNAIKASVADIKEISEKAANRFHMNGQ 105 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DE+H ++ ++LL+ LE ++ + ATT+ L +LSRCL F K Sbjct: 106 QTLLFLDEIHRFNKLQQDSLLQDLEN--GNIILIGATTENPYYNLNNALLSRCLAFEFKK 163 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L + + L++I +E+ L+ ++ EG R A+++ + I + + + + V Sbjct: 164 LSEKNLMEILKNINEKENFGISDDILEYISEIIEGDARQAINILE-LITNVGVEFTLEEV 222 Query: 238 SAMLGTL--------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +L T + ++++++ ++ + + + + + G + + ++ L Sbjct: 223 KEILNTKKSYHKTEDKYNTISAMIKSIRGSDPDATVYWMAKMLSGGEDILYIARRLVIL 281 >UniRef50_Q1NDV9 DNA polymerase III delta prime subunit n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NDV9_9SPHN Length = 322 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 91/219 (41%), Gaps = 23/219 (10%) Query: 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK---------GLNCETGIT 69 +G E L GR+HH ++F+G +G+GK S AR LA + + Sbjct: 5 IGHEAQARMLLAQAQSGRMHHGWIFAGPKGIGKASFARALALRLLAGAAGPAI--DGDGL 62 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDA-------ASRTKVEDTRDLLDNVQYAPARGRFKV 122 A P R IE D E+ A V+ R L +Q AP+ ++ Sbjct: 63 AVPEDH-PIRRLIEATAHPDYAELAPIEKDGVTARNISVDQVRGLQRLIQSAPSLSPRRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D L R + NALLKTLEEPP + FLL + P +L TI SRC AL+ Sbjct: 122 VVVDSADDLERGAANALLKTLEEPPSDMLFLLVSHAPGRLLPTIRSRCRTLRFDALNDAA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 + +L E + L A EGS A+ Sbjct: 182 M----RRVLIEAQPGLSDVEMTALVHAGEGSPGQAMRFA 216 >UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6G5_9BACT Length = 353 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 118/346 (34%), Gaps = 34/346 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 +++ L N R+ HA+L + A +LA+ C PC VC CR+ Sbjct: 12 PALVSHLENARKHHRLAHAFLVHADTERARREFAVVLAQIAACPDSREGRPCTVCRVCRQ 71 Query: 82 IEQGRFVDLIEIDAASR---TKVED--------TRDLLDNVQYAPARG-RFKVYLIDEVH 129 +EQG + + + + K+ + R + G KV +I + Sbjct: 72 LEQGTYSEFYTLSPVGKMYFIKIGERGKPEPNTLRYFEEQFHLTSTGGANRKVGVIYDAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE- 188 ++ S NALLKTLEEPP +L T +P L T SRC Q L + ++ E Sbjct: 132 RMNDESQNALLKTLEEPPPETLLILTTGNPASLLPTTRSRCQQISL-------LTNRCEF 184 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +E + AL AR G L A + Q I G S G + Sbjct: 185 DFAGKEQVFAALGALFFEAR---GDLAKAEAGAAQLIQVASG-----LNSDAGGRTAGEW 236 Query: 249 ALSLVEAMVEANGERVMALINEAAARG-----IEWEALLVEMLGLLHRIAMVQLSPAALG 303 L A + V + +AA E L + ++ + Sbjct: 237 TARLTAAAQTGDPALVKRVEQQAADAAAGAYMKERGQFLTAIQTFCQQVFQLSEGIRFDQ 296 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 I + +L I P + + L + + + + Sbjct: 297 LANPEIFAGI-DLPEKIAPARGAVALREAEELLFTLRFNVNEELAL 341 >UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri RepID=RFCS_METKA Length = 635 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 97/266 (36%), Gaps = 27/266 (10%) Query: 99 TKVEDTR-DLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 ++ R + + + P G RFK+ +DE L+R S AL + +E + +F+LA Sbjct: 391 RGIDVIRTKVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAA 450 Query: 157 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 216 + I SRC+ F L I+ +L I E + AL + +EG +R Sbjct: 451 NYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEGDMRR 510 Query: 217 ALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 A+++ QA A+ ++ V + T ++ ++ + ER L++E Sbjct: 511 AINVL-QAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHEL----- 564 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + +S + + M E IP I + Sbjct: 565 ---------------LTRYGMSGEDVVRQVHREIFDMDE----IPEEAIPELVNAVGDFE 605 Query: 337 KELPYAPDRRMGVEMTLLRALAFHPR 362 L D R+ +E L R A Sbjct: 606 YRLIRGSDERIQLEALLARIHALGNE 631 Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+V QEHV+ L ++ G + + LF+G G GKT+ A LA+ L Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPN-LLFAGPPGTGKTTAALCLARELF 69 Query: 64 CET 66 E Sbjct: 70 GEH 72 >UniRef50_A4MZJ7 DNA polymerase III subunits gamma and tau n=1 Tax=Haemophilus influenzae 22.1-21 RepID=A4MZJ7_HAEIN Length = 173 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 101/172 (58%), Gaps = 2/172 (1%) Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + YRW+ + P + + + P +K+A+ + TPEL K+ + ++D WA V + L Sbjct: 3 ADTYRWEWSNPELAKADTGVCPSDIKQAILKDITPELRLKIITQTQQQDEWADIVERSGL 62 Query: 533 PKLVEQVALNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 +++ALN + + ++D+ + L L S + HL + + LAEALS L+G + LTI D Sbjct: 63 TGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLD 122 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D+ V TP+E+R+ IY+ +A+ + D+ +Q L FDA+LD ESIRP+ Sbjct: 123 DS-NVTTPIEYRRNIYQALREKAQHELQKDSKLQILLNEFDAKLDIESIRPV 173 >UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Tax=Trypanosomatidae RepID=Q4Q732_LEIMA Length = 354 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 38/299 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 K+RP+T A+V Q+ + AL L G + H +LF G G GKT+ +A L Sbjct: 30 KYRPRTLAEVEAQDEAVGALRACLKEGANMPH-FLFHGPPGTGKTTSILAVAHELFGPDY 88 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----------------N 110 I + + E++A+ + R+ + + Sbjct: 89 IRSR------------------VRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSD 130 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + P FK+ ++DE L + AL + +E+ + +F + ++ I SRC Sbjct: 131 GKVYPVP-PFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 189 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 ++ K L + H++E++ E I P +L L + G LR A+ A + Sbjct: 190 AKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGD 249 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 +S + ++ G++ D + A+ E V+ A G +L++M L Sbjct: 250 DLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQHYL 308 >UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrionales RepID=B7VLY9_VIBSL Length = 321 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 122/329 (37%), Gaps = 38/329 (11%) Query: 29 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 L R ++ + + G+G ++ L L C + CG C +C ++ G Sbjct: 16 KKSLDAERFPNSVIVNAPEGLGVEALVSQLTDALMCVN-YESEACGFCHSCELMKSGSHP 74 Query: 89 DLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 D I+ K V+ R Q + G +V L++ ++ + NALLKTLEE Sbjct: 75 DFHVIEPEKEGKSITVDQVRASNRWAQQSSQLGGLRVILLNPAEAMNESASNALLKTLEE 134 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P + F+L+T + +L TILSRC QF+ + QL+ + Q Sbjct: 135 PASNCIFILSTRNSNRLMPTILSRCQQFN-------VVCPQLDAGSAWLNGEVGKTVPQY 187 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 + + + A ++ DQ + A+ G +D +++ ++ Sbjct: 188 ILTLNDNAPLKAKAMFDQGGV-------EASTKALDGFVD----------VIKGTQPDML 230 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 E + + L+++ L H + + G AI + L + Sbjct: 231 KFSTELS---KDP---LIQLSWLWH--LLSDVQKLHFGLANHAIIPSAKALCEVMSYQSA 282 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 LLI ++L + E+ ++ Sbjct: 283 YAASNKLLILIEQLKQ--HPGLNTELLIM 309 >UniRef50_B8DVL4 Possible DNA polymerase III delta prime subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DVL4_BIFA0 Length = 430 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/429 (14%), Positives = 119/429 (27%), Gaps = 92/429 (21%) Query: 15 FADVVGQEHVLTALANGLSL-GR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ V+ L GR + ++L G G G +AR A L E+ Sbjct: 4 WDAIVGQPKVVEELRRVAEGDGRGVAQSWLICGPAGSGTMQVARAFAAAL--ESPDHGEG 61 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +I RF D++ + +++ RDL+ + P+ +++ +I+ + Sbjct: 62 ELPTKITSQILADRFPDVVTLSTDKVTIGIDEVRDLVTLSEQMPSTAPWRIIIIENTERM 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH-- 189 + N LLK +EEP H +LL Q + TI SR L ++I LE Sbjct: 122 LERTTNVLLKEIEEPSAHTIWLLCAPSAQDVLPTIRSRTRLVTLGVPVADEIATWLEREV 181 Query: 190 -------------------------------------ILNEEHIAHEPRALQLLARAAEG 212 E +AR EG Sbjct: 182 RVLEDPTKRERARAKAVGGRAGAKAARSGKSAKAPKPAPAPEPRPVSHETAVRIARLCEG 241 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAML------------------------------- 241 +L A V M Sbjct: 242 NLDIARLYARYPSVLRSRDQLVNNVLKMTRASQAVVFAGELYGSAQEQANERAEQAAGER 301 Query: 242 --------GTLDDD----QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 G D+ A+ + + + ++ + + Sbjct: 302 QAEFRKLNGLSPDETVPADLRRAYTALAKKD--DIKRHATRMTRDVLD--RAFTTIASIY 357 Query: 290 HRIAMVQL-SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 +A+ Q + ++G + EL+ + + R+ + + + Sbjct: 358 RDVAVFQNDAEGSVGLINIENRDAIAELSAQLTREQTLARMDAISTARRRIAGNGNALLD 417 Query: 349 VEMTLLRAL 357 +E L Sbjct: 418 IEALFCALL 426 >UniRef50_Q0FAY2 DNA polymerase III subunit delta n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAY2_9RHOB Length = 371 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 28/270 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G + R+HHA++ +G+RG+GK ++ +AK + + + Sbjct: 24 IYGHNSPQFDFLDAYKTERLHHAWMITGSRGIGKATLGYKIAKFILSQNQSISDINQDLK 83 Query: 78 NCREIEQGRFVDLIEIDAAS--------------------RTKVEDTRDLLDNVQYAPAR 117 + +I+ I+A V++ R L + + A Sbjct: 84 DTLDIQSD-HPVSKRINALGEPNLYLVRRLWDEKLKKFKQNITVDEIRKLKNFFSMSAAD 142 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G ++V +ID ++ + NALLK LEEPP+ V LL + P +L TI SRC Sbjct: 143 GGWRVAIIDAADEMNNAAANALLKILEEPPKKVLILLISHQPLRLMPTIRSRCRSLKCNN 202 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L E + + LE + E+ + + + +LA GS+ ++ L + + Sbjct: 203 LSSEDLANALEQLDIEQ--SQDKEQINILA---NGSVGSSVELISNNGIEIYNSIV--QL 255 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMAL 267 + + ++ L ++ N + Sbjct: 256 AKQIPQMNRQSIQKLADSCAGKNAAERYEI 285 >UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482J4_COLP3 Length = 331 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 130/349 (37%), Gaps = 46/349 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----------A 70 E + L+ + HA + G G G+ ++A+ L + L C+ ++ + Sbjct: 6 HEKQVQ-LSRQYQQDTLAHAIIIQGIEGAGQGALAKWLIELLICQNPLSTTNAAGTETIS 64 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C C + + D + + + ++T V+D R ++ G+ K LI + Sbjct: 65 EACGQCKACLLKKSDNYPDHLLLKSENKTLGVDDIRRGNAFLEKTAHLGKVKTILIPQAQ 124 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +++ + NALLKTLEEP + +L T D L TI+SRC + ++ + E + QL Sbjct: 125 VMTIAAANALLKTLEEPSANSYIVLITDDLDSLLPTIISRCAVYAIRPMIGEALLAQL-K 183 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD--GQVSTQAVSAMLGTLDDD 247 + N + A L A D A + +++ + V + Sbjct: 184 VSNLGDVQLSSSA--PLTNKAN----------DTAYINLSHLPELTDKIVHQEFQVFNQY 231 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L++ ++ E L+++ L L+ +V + L Sbjct: 232 ----LLDYLLHGQSEE--KLLSQIVDNKYSLRWLEKITCNLMREYYLVNATDQTLLLIK- 284 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLL 354 + I + YQ ++ K + +R+ E L+ Sbjct: 285 ----------QKISVQVLNQIYQAIITSNKLIKSYLQANRQFVGEQLLM 323 >UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD Length = 649 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 102/270 (37%), Gaps = 27/270 (10%) Query: 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 +L+E++A+ ++ RD + N + G ++ +DE L+ + +AL +T+E+ Sbjct: 403 NLLELNASDERGIDVVRDRIKNFARSSFGGYDHRIIFLDEADSLTDDAQSALRRTMEQFA 462 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 ++ +F+L+ K+ I SRC F L IR Q + I E+I L L Sbjct: 463 DNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDGLDALV 522 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 AA G +R A++ QA A+ V + V + T + ++V A ++ + + Sbjct: 523 YAAGGDMRRAINSL-QAAATTGEVVDEETVYTITSTARPEDIETMVTAAIDGDFTTARSQ 581 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + ++ +++ LHR + Sbjct: 582 LQTLL---VDTGMAGGDIIDQLHR----------------------TAWNLDLDEETTVR 616 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + ++ +E L Sbjct: 617 LLERVGEADYRITVGANEQVQLEALLASLA 646 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 K+RP T ++ GQE + L + + + H LF+G GVGK Sbjct: 20 KYRPATLENIYGQEDTVDRLQSYIDRDDLPH-LLFAGPAGVGK 61 >UniRef50_UPI000196B9A7 hypothetical protein CATMIT_00793 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B9A7 Length = 319 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 112/320 (35%), Gaps = 41/320 (12%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS-IARLLAKGLNCETGITATPCGVCDNC 79 Q L + HA+L G T IA +A+ C C CD+C Sbjct: 9 QPIFYRILEKSFKENKKTHAFLLVGDH----TDDIATFIAQSYICH--EDTLACETCDDC 62 Query: 80 REIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 I++G + D+I D + K D + + + KVY++ + + + N+ Sbjct: 63 IRIKEGLYPDMIVCDGKETSIKKSDIDHIQEEFVKSSVENNGKVYILKNIDNATTQAMNS 122 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP E V +L T + K+ TI SRC L + +L+ E + Sbjct: 123 LLKFLEEPVEEVYAILTTKNINKVLPTIQSRCQVIKLLPESKHSLELKLK----NEGVDE 178 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 E + L ++ D ++ + +E + Sbjct: 179 EDAMV----------LPHLFDSIEECNEYKDSELYFDI---------KNYVFYFIEDLYM 219 Query: 259 ANGERVMAL---INEAAARGIEWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMR 314 + ++ L + + + E AL + +L L + + V+ S L +M Sbjct: 220 RPSDLLINLQINLGKKYKKNKEAYALFLNLLVLGMRDMFHVKHSIPVLFVKHKDFFEKMP 279 Query: 315 ELARTIPPTDIQLYYQTLLI 334 E + I + +L Sbjct: 280 EDGK------ILQKIEIILE 293 >UniRef50_Q5FUU7 DNA polymerase III delta prime subunit DnaC n=1 Tax=Gluconobacter oxydans RepID=Q5FUU7_GLUOX Length = 280 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 103/250 (41%), Gaps = 35/250 (14%) Query: 37 IHHAYLFSGTRGVGK-TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 +HHA+L G G+GK T RL LN E ++ R I G DL+EI Sbjct: 2 LHHAWLICGPAGIGKATLAFRLARLLLNAENPDSSQA-------RRIAAGTHGDLLEISR 54 Query: 96 A---------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 A D R + + + G ++V ++D L+R + NALLK LEEP Sbjct: 55 AVDEKKGRLRGEITAADVRPVQTFLHHTATEGGWRVVIVDGAEYLNRFAANALLKILEEP 114 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P LL T+ P L TI SRC L AL +R L I +L Sbjct: 115 PPRCVLLLTTSSPGALLPTIRSRCRMLTLSALSDADMRAALPGIS-----------ADVL 163 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 AR A GS AL L+ DG +++ + G + + ++L E + A Sbjct: 164 AR-AHGSPGRALFLSQD----RDGAIASFVAEILAGQVRGSETMALSERIARE--AEGFA 216 Query: 267 LINEAAARGI 276 L+ + G+ Sbjct: 217 LLCDLLGEGL 226 >UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleosporineae RepID=RFC2_PHANO Length = 411 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 82/345 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+T ++V Q++ + L+ L + H LF G G GKTS LAK L Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQL- 90 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-----LLDNVQYAP--- 115 G E+ + R ++E++A+ + R + AP Sbjct: 91 --YGP------------ELMKSR---VLELNASDERGISIVRQKVKDFARQQLSVAPTYN 133 Query: 116 ---------------ARGRF-----KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 R ++ K+ ++DE +++ + +AL +T+E +F L Sbjct: 134 VMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLV 193 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 ++ + SRC +F K+LD +++ I E + + + L R A+G LR Sbjct: 194 CNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLR 253 Query: 216 DALSLT-----------------------------DQAIASGDGQVSTQAVSAMLGTLDD 246 A++ D A +S + ++ + G + Sbjct: 254 KAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPA 313 Query: 247 DQALSLVEAMVEANGERVM------ALINEAAARGIEWEALLVEM 285 S +A+ + + + ++ A G + ++ Sbjct: 314 PTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQL 358 >UniRef50_C8P224 DNA polymerase III, delta prime subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P224_ERYRH Length = 316 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 28/251 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L S R+ HAYL G G A+ +A + C CG C C+ Sbjct: 7 QTKALNLFHRQQSKNRVSHAYLIVGDYGT--LDYAKYMAMSMMC-GEQDIGACGSCSTCQ 63 Query: 81 EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPAR-GRFKVYLIDEVHMLSRHSFNA 138 I+ D + K + L + + +VY+I++V + + N+ Sbjct: 64 RIDSENHADFRILSGKEQSIKKSEIISLKEYFSQSSIETAGHQVYIIEDVDNATVEAMNS 123 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP + +L T + ++ TI SRCL HL++++ + + + +E+ I Sbjct: 124 LLKFLEEPEGDIVAILTTRNENRVLETIRSRCLTVHLESMNHQVLFDK----AHEQGI-- 177 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + LL+R ++ +V +A ++E + + Sbjct: 178 DDVDAYLLSRM--------NHNFEELELQSSTEVYKEA---------SSIFFDVLECLNQ 220 Query: 259 ANGERVMALIN 269 + + + Sbjct: 221 RDYLSAILTLQ 231 >UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BTX6_9PROT Length = 314 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 110/298 (36%), Gaps = 43/298 (14%) Query: 64 CET-GITATPCGVCDNCREIEQGRFVDLIEIDA-----ASRTKVEDTRDLLDNVQYAPA- 116 CE C C +CR ++ ID + ++ R+L ++ A Sbjct: 46 CENLTDENKTCNTCPSCR-YLVDEHPNIRLIDKNLELKSDVITIDQIRELSSFIELASTS 104 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K+ I H L+ + NALLK LEEPP + F+L T++ K+ TI SR L Sbjct: 105 EHDKKIIFIKNTHYLTSSAANALLKNLEEPPNNTFFILLTSNLHKILPTIRSRATIHKLA 164 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + +Q L+ EH P A++ L AE A+ + + Sbjct: 165 SPTNKQCEDYLKD----EH----PEAIKFL-DLAERKPFLAIQMAN-------------- 201 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + + S+V + +M + A G + + M + +A + Sbjct: 202 --------NKELINSIVNIFLRGKSFDMMDVNESLLASG--PQFFVDMMQKWIADLAHFK 251 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + ++ ++ + ++ +Y+ L+ R+ ++ + ++ ++ Sbjct: 252 EF--STVYYYKNLLDQIELISNQLSYKELLNFYKKLIEYRRLSETTINKSIALDNLMI 307 >UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales RepID=A3CUW4_METMJ Length = 336 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 18/291 (6%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 +RP+ D++GQ+ V+ L G + H L SG G GKT+ LAK L G Sbjct: 7 YRPRRCDDIIGQDEVVRHLTAFSDSGSVPH-MLISGPHGTGKTAAVECLAKRL---YGEN 62 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN--------VQYAPARGRFK 121 + ++ GR +E D R L+ N P FK Sbjct: 63 WKANTTVFSATDLL-GRGRSALETDERFSMIYRKDRSLIVNFKQIVKWYASMRPLDADFK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + + ++ H L+ + AL +T+E +F+ T P + I SRCL ++ Sbjct: 122 LMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRCLPLFFAPVESS 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +LE IL E A + L+ AA+G LR A+ + Q A + + +S Sbjct: 182 LVLTRLEEILAAEGAAVPADDIDLIVYAAQGDLRRAI-MYLQIAARAEQEFDLAEISR-- 238 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHR 291 + + A S A+ + N + + G+ ++ E+ + R Sbjct: 239 -SETTNVATSAFVALRDGNFDAARRIAESLMIEYGLSAREVVGELRQVARR 288 >UniRef50_Q4MV26 DNA polymerase III, gamma and tau subunits n=2 Tax=Bacillus cereus RepID=Q4MV26_BACCE Length = 101 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ Sbjct: 1 MSNYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIG 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQ 84 KG+NC T PC NC +I Sbjct: 61 KGVNCLTPLSNGEPCQKYANCSDINN 86 >UniRef50_Q048X0 DNA replication ATPase n=20 Tax=Lactobacillus RepID=Q048X0_LACDB Length = 290 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 5/155 (3%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L G++ HAYL + V + A L +NC P G C CR I G Sbjct: 13 RQLKQAHDRGQLSHAYLLLSSDEVEALNTAYWLICYVNC--TGEKKPDGTCPACRRILAG 70 Query: 86 RFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+ ID ++ R L + +P G + ++I+ L+ + NALL Sbjct: 71 NHPDVFLIDTEENKQSIAIDQIRPLKQELAKSPLEGDRRYFVINHAQKLTLPAANALLNL 130 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 LEEP V L + ++ TI SR + Sbjct: 131 LEEPAAPVVTFLIANNGGQILPTIKSRTQIINFSQ 165 >UniRef50_C8PYS8 DNA-directed DNA polymerase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYS8_9GAMM Length = 387 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 37/202 (18%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS-IARLLAKGLNCETGIT-----ATPCG 74 Q+ L + + HA LF+G G GK + + R +A L CE AT CG Sbjct: 50 QQATWQYLTTHIDA--LPHAMLFAGNAGTGKRAFVYRFVAWAL-CENQRDNVQGVATACG 106 Query: 75 VCDNCREIEQGRFVDLIEI-------DAASR-------------------TKVEDTRDLL 108 C +C+ + DL +I DA+ + K+++ R+L Sbjct: 107 QCQSCQWLIANTHPDLYQIPTPTVARDASPKPKVNNALVAQAPTHQSSYSIKIDEIRELQ 166 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 V + G ++ +I + ++ + NALLKTLEEP E+V LL + P +L TI S Sbjct: 167 PFV--TQSSGGLRIVVIHQADAMTLAASNALLKTLEEPAENVLMLLISDSPSQLLPTIRS 224 Query: 169 RCLQFHLKALDVEQIRHQLEHI 190 R F + + Q ++ + Sbjct: 225 RLQAFSVSHVTPAQSMQVMQQL 246 >UniRef50_A9BCY6 DNA polymerase III, delta prime subunit n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BCY6_PROM4 Length = 325 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 58/366 (15%), Positives = 124/366 (33%), Gaps = 78/366 (21%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 FA + Q + L + +I YLFSG +GVG+ + +GL TG P Sbjct: 6 FAGIEDQNLAINILTEVIHKNKIAPGYLFSGPQGVGQRIVTLRFLEGL--ITGGDVEP-- 61 Query: 75 VCDNCREIEQGRFVDLIEIDAA-----------------------SRTKVEDTRDLLDNV 111 + +E DL+ ++ + S+ +++ ++L + Sbjct: 62 --TIRKRLESLNHPDLLWVEPSYISQGRVIKQSLAQKDNININAISKIRLDQIKELKTFL 119 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 + + +I++ ++ + NALLKTLEE + +L ++ + L TI SRC Sbjct: 120 GKRTIEAKLAMVVIEDAEKMNEAASNALLKTLEEV-NNGLIILISSRSENLLSTIKSRCH 178 Query: 172 QFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 + K L + + + I + + + L + GS + + Sbjct: 179 EIPFKPLKYHSLEELFINYGEDNKINNYTFDSRKELINLSNGSP--------ELLIRNIN 230 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 ++ + + LSL + + + + + + ++ E L ++ L Sbjct: 231 KIQE---------IPSEILLSLTK--LPNDYLEAITIAKDIIEN-LDIEQQLW-IINFLQ 277 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + ++ S L + L + R+ E Sbjct: 278 QHFWLRESN--------------------------LYCMNVLKVLSSHLVSSIQPRIAWE 311 Query: 351 MTLLRA 356 + L+ Sbjct: 312 VALIEL 317 >UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG6_ENCCU Length = 283 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 106/282 (37%), Gaps = 48/282 (17%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA-KGLNC 64 K+RP++ G EH+ L N GR H L G G GKT+ A LLA + L Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNS--SGRGHPNLLLYGPPGTGKTTFAHLLASQKL-- 58 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E++A+ + R+ + YA G+ K + Sbjct: 59 ---------------------------ELNASDERGISVIREKIK--VYASTLGKDKTVI 89 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE L+ + + L + +E+ + +F+ T P K+ + SR + +I Sbjct: 90 LDECENLTSDAQHCLRRVIED-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTP-TESKI- 146 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 LE+I ++E + ++ + + LR A+++ G + +G + Sbjct: 147 --LENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQGVAPLGSFCI-----EEAVGAV 199 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 V+ E + RV+ + E G L+ ++ Sbjct: 200 PQ----KTVDMFWEVDRPRVVEYVREFLREGYSALQLIHQLA 237 >UniRef50_UPI0001C42946 DNA polymerase III subunits gamma and tau n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42946 Length = 385 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 50/397 (12%), Positives = 128/397 (32%), Gaps = 45/397 (11%) Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 ++AR A+G +RDALSL DQ +A V+ V + G + + LV + + + + Sbjct: 1 MIARLAQGGMRDALSLLDQVLAYALEDVNIDHVIEVTGGVSLNHLFDLVTNVYNRDIQFL 60 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + +N G + L+ ++ + +++ + + ++ ++ T+P Sbjct: 61 IQKVNTLIDLGKDPMLLVDDLTLFYRDLLLLKTIGKEVELNRVILDEKIESFIDTVPIGH 120 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR-MPLPEPEVPRQSFAPVAPTAV 383 +Q + + L + + +E+ L+ A HP + E ++ + Sbjct: 121 LQSLIKQWNEVKAVLKVTSNPKASLEIALVDMTADHPNGLDSSELLALKKEITELR---- 176 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 ++ +V + EP +P + Sbjct: 177 ---------------------------NLVQKDLSSNKVLLQEAKEIKEPEETIEVQPED 209 Query: 444 NAALERLASVTDRVQARPVPSALEKAP---AKKEAYRWKATTPVMQQKEVVATPKALKKA 500 + + +S + +P E + + ++ P + + + K Sbjct: 210 DNGTQHDSSEEIEPEIHQLPDVKESNVDFLTQLKEDLANSSVPEYVEVIDAESVEGEVKN 269 Query: 501 LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQ 560 E + L + + L K V++ + A+ ++ + L Sbjct: 270 NEGNSDSKWIVSLMEIGDKEARSHLNAQREQLEKTVKEARMTAYTILKESEIGLVTAEEV 329 Query: 561 RHLNNRGAQQK----------LAEALSMLKGSTVELT 587 + ++ K + A+ + G + + Sbjct: 330 VMIYPTKSKAKVADRVGNSSFIMGAIEDILGKEMNIK 366 >UniRef50_Q7VE62 ATPase involved in DNA replication n=1 Tax=Prochlorococcus marinus RepID=Q7VE62_PROMA Length = 316 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 123/367 (33%), Gaps = 82/367 (22%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F + Q+ + L++ L GR+ YLF G +GV + IA GI Sbjct: 8 FKEFKYQKLAIELLSSSLEQGRVAPTYLFKGPKGVLQKEIAFRF------LEGIADQSIN 61 Query: 75 VCDNCREIEQGRFVDLIEIDA-------------ASR----------TKVEDTRDLLDNV 111 + + G DL I+ A +VE +DL + Sbjct: 62 SKNIRNRLISGNHPDLYLIEPTYLMQGNLIKQSDAKNESFKNHIEPQIRVEQIKDLKVFL 121 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P + L+++V L+ + NALLKT+EEP V +L ++ P++L TI SRC Sbjct: 122 NKKPVESTLSMALLEDVDTLNESASNALLKTIEEPTSSVL-ILISSRPERLLDTIKSRCQ 180 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQAIASGDG 230 K + + L IL + +I + L + GS L Q + D Sbjct: 181 IIPFKPFEND----LLNEILIKTNIKKTLTNMHKELFYLSNGSP----YLLKQNLEIIDA 232 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 +++ + L +L ++ + + ++ + Sbjct: 233 --IPESIWFKVERLPIKALDAL---LLAKEITEKLTAEQQIW------------LINWMQ 275 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + ++ + + + L + L ++++ E Sbjct: 276 QYYWIKKTNSI--------------------------IIKRLEQLKLHLKSYVNQKIAWE 309 Query: 351 MTLLRAL 357 + L+ + Sbjct: 310 IALIDLI 316 >UniRef50_A2BNS3 DNA polymerase III, delta prime subunit n=7 Tax=Prochlorococcus marinus RepID=A2BNS3_PROMS Length = 320 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 31/224 (13%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 E V T L N + + Y+F G G+GK A + + ++ + + Sbjct: 13 EEVNTCLNNIIKNKSFANGYIFYGAEGLGKKQTALQFIQEIFKKSSPSKNLEE------K 66 Query: 82 IEQGRFVDLIEIDAAS---------------------RTKVEDTRDLLDNVQYAPARGRF 120 I+ D + I+ S K+ R++ + Sbjct: 67 IKNNNHPDFLIIEPDSLLETKSSGGSDLEKKTKSGSEIIKIAQIRNIKTFLSQKSINSEK 126 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ LI + H+L+ + N LLKTLEEP + F+L T+ L TI+SRC ++ Sbjct: 127 KIVLIIDAHLLNEAASNCLLKTLEEP-SNGIFILLTSKLNLLLDTIISRCQIVRFRSFSS 185 Query: 181 EQIRHQLEHILN--EEHIAHEPRALQLLARAAEGSLRDALSLTD 222 +QI+ L+ L+ + +I + L+ +A GS L + Sbjct: 186 QQIKSILKEYLDTSKSNINAKLEFEDLI-NSANGSPNQLLKNIE 228 >UniRef50_C8WQK9 DNA polymerase III gamma/tau subunits-like protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQK9_ALIAD Length = 312 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 106/333 (31%), Gaps = 47/333 (14%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L G + HA L G AR LA+ L CE PCG C +C + G Sbjct: 18 EVLVRRLRAGELWHAVLLVGES-SQAERAARWLAQALLCEAPRADAPCGRCRSCAQFSAG 76 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 D K D L + G KVY++ ++ + N +LKTLEE Sbjct: 77 SHPDF-WASGEEGLKAGDVEALQAWLATKGH-GTRKVYVLYGADEMTPVAANRMLKTLEE 134 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P +L QK+ T+ SR L A ++ +P ++ + Sbjct: 135 PAPETYAILTAKSRQKVLSTLRSRSFTCLLSASPPF--------------LSTDPTSISV 180 Query: 206 LARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 +ARAA + +G + + G + A S + + Sbjct: 181 VARAAS---------AEDPSFAGLMERVIEWTETWLSGGATPWEMAASWQS--IAKDVPA 229 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 G L+ + L + V+ A A + R +A + Sbjct: 230 ---------EEG------LLLLAEWLRELMRVRSGGQA--ERFAEWQEAARRIAPILEVE 272 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 Q ++ R L + +E +R Sbjct: 273 QYAACVQAVMEARLRLQSHVAWLLNLEQMCVRL 305 >UniRef50_C7LJZ2 Putative DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LJZ2_SULMS Length = 360 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 111/371 (29%), Gaps = 80/371 (21%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR-EIEQGRFVDL 90 L + +I HA LF G G G A +K + C+ +C + + + DL Sbjct: 9 LKINKIPHAILFLGPEGCGNLITAINFSKKILCKEDDH--------SCLLKFKNFQHPDL 60 Query: 91 IEIDA----------------------------------ASR---TKVEDTRDLLDNVQY 113 I S E +LL + Y Sbjct: 61 HFIFPLPKKIMINKNIFNKWSIFLKKQPYGCFSDWIKWIKSNECFIYKEQIENLLKKITY 120 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 +K+ ++ L+ +S N LLK LE PP+ FLL + + TILSR Sbjct: 121 KSYESDYKIIILWMPEKLTLYSSNKLLKILEFPPKKTIFLLVGENENNILPTILSRIFLI 180 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 ++I+ LE + + + +A AEG+L AL L + + + Sbjct: 181 RFNKFSFKEIKKFLEK-----KLKIDTIQSKQIALKAEGNLNKALKLVNN---FQENYLE 232 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANG---ERVMALINEAAARGIEWE-ALLVEMLGLL 289 + +L ++ N E+++ + E + L ++ + Sbjct: 233 INFI---------SWIRNLF--FIKKNPTFLEKIILFSKKINFWKKETQIKFLFYLIEIF 281 Query: 290 HRIAMVQLS----PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + + + + I + E+ Sbjct: 282 RKAFLQKYNNFLIKEIPLTYNKFNWTNFCLFIHKQNIEQIN--IEI-NKAIYEIEKNA-- 336 Query: 346 RMGVEMTLLRA 356 VE+ L Sbjct: 337 --VVEIVFLDL 345 >UniRef50_Q5QZ33 DNA polymerase III, delta prime subunit, ATPase n=1 Tax=Idiomarina loihiensis RepID=Q5QZ33_IDILO Length = 286 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 28 LANGLSLGRIHHAY-LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 86 L GR+ HAY L G G T + L + L C+ + CG C +C G Sbjct: 13 LVASAEAGRLAHAYYLQHNVEG-GSTEFIQRLNQFLLCKQ-PGKSACGKCKSCLLYLSGN 70 Query: 87 FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D ID A +R V+ R+L NV + KV +I E ++ + NALLK LE Sbjct: 71 HPDTWTIDGAQVNRIGVDTVRELQQNVTQTANQNGLKVAVILEAEKMTEQAGNALLKVLE 130 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCL 171 EPP +L++T D ++L T+ SR Sbjct: 131 EPPADTHWLVSTKDAERLLPTLRSRMQ 157 >UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Euryarchaeota RepID=C6A0M4_THESM Length = 766 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 4/190 (2%) Query: 99 TKVEDTRD-LLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 + R+ + + + P G FK+ +DE L++ + AL +T+E +V+F+L+ Sbjct: 527 RGINVIREKVKEFARTKPIGGVSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC 586 Query: 157 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 216 K+ I SRC F + L E + +L++I E + LQ + AEG LR Sbjct: 587 NYSSKIIEPIQSRCAIFRFRPLKDEDVARRLKYIAENEGLELTEEGLQAILYVAEGDLRR 646 Query: 217 ALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARG 275 A+++ QA A+ D +++ + V + + ++ +E N + + E +G Sbjct: 647 AINVL-QAAAALDTRITDENVFLVASRARPEDVREMMLLALEGNFLKARDKLREILLKQG 705 Query: 276 IEWEALLVEM 285 + E +L++M Sbjct: 706 LSGEDVLIQM 715 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ D+VGQ+H++ L + + + H LF+G G GKT+ + LA+ L Sbjct: 16 KPWVEKYRPERLDDIVGQDHIVKRLKHYVKTASMPH-LLFAGPPGTGKTTSSLALARELF 74 Query: 64 CET 66 E Sbjct: 75 GEH 77 >UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924838 Length = 260 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 10/205 (4%) Query: 90 LIEIDAASRTKVEDTRDLLDNVQYAPARG---------RFKVYLIDEVHMLSRHSFNALL 140 ++E++A+ ++ R+ + N FKV ++DE ++ + AL Sbjct: 56 VLELNASDERGIQVIREKVKNFASQSVSSFKVDGTPCPPFKVVILDEADSMTTSAQAALR 115 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 +T+E + +F L ++ I SRC +F K L I QL++I E + E Sbjct: 116 RTMERQTKTTRFCLICNYVSRIIEPITSRCAKFRFKELSSNAIYEQLKYISRMEAVKIEE 175 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL+ L +++G +R A++ A G+ + + M G + +++A Sbjct: 176 EALEQLIESSDGDMRKAITYLQSAHRLKLGEIILANDIFEMTGKVPKTMVADIMKACSSG 235 Query: 260 NGERVMALINEAAARGIEWEALLVE 284 + E++ + G L+ + Sbjct: 236 SFEKLDKQVKLMMTGGYSASQLITQ 260 >UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota RepID=A8BBR2_GIALA Length = 351 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 133/340 (39%), Gaps = 51/340 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K RP ++ Q+H + A + G + H L G G GKT++ + A Sbjct: 1 MS-APWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPH-MLLYGPAGTGKTTL--IHAM 56 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----AP 115 P + R + E +A++ ++ R+ + ++ AP Sbjct: 57 M-----HEFFGP--------RFWRAR---VSEFNASTDRGIKIVRERIKSIARTVIAVAP 100 Query: 116 ARGR-------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 + F+V ++DE L+R S AL + +E+ E +F + P ++ I+S Sbjct: 101 DDVKAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVS 160 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAH----------EPRALQLLARAAEGSLRDAL 218 RC +F +L I +LE I E AL +A ++G +R A+ Sbjct: 161 RCARFAFSSLPRPLIIDRLESICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAI 220 Query: 219 SLTDQAIASGDG---QVSTQAVSAMLGTLDDDQALSLVEAMVEAN--GERVMALINE-AA 272 +L + ++S + V + G + D+ SL+E M + + E ++ +++ Sbjct: 221 TLLQATVQFCQNMEEELSPKHVHLLAGKIPDELIASLIEKMTDVSLPVESLIEYLHKSVV 280 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 G ++ E+ + P +L + + R Sbjct: 281 RIGYPALDVIREL---WRSLCFEAQVPESLRHAVGDAYQR 317 >UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-like ATPase n=2 Tax=Brachyspira RepID=C0R1V7_BRAHW Length = 431 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 142/378 (37%), Gaps = 67/378 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ +A + RP T +V GQ H+L L + +I + +F G GVGK+++A ++ Sbjct: 10 NFKPMAERMRPLTIEEVFGQHHILDKNKTLRKMIDNDKIT-SMVFFGPPGVGKSTVASII 68 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK + I+++A V + R+ + + Sbjct: 69 AK------------------------KTKSEYIKLNAVLSN-VSEIREAIKKAE-KNLEN 102 Query: 119 RFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQKLPVT-ILSRCLQFHL 175 R K + IDE+H ++ +ALL +E + + +TT +P +LSR + F Sbjct: 103 RKKTILFIDEIHRFNKSQQDALLPAVEN--GSIILIGSTTLNPYFYLNNALLSRIMLFEF 160 Query: 176 KALDVEQIRHQ-LEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIAS-- 227 + LD I+ L+ I ++ + E A+ L+ R + G +R A + + + + Sbjct: 161 RNLDDNDIKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQ 220 Query: 228 -----GDGQVSTQAVSAMLGTLD--------DDQALSLVEAMVEANGERVMALINEAAAR 274 ++ + V + + + ++++ ++ + + Sbjct: 221 IDESKEKLTITEEIVRDVTSKQSISFDEDEHYNTISAFIKSVRGSDPNAAIYYLARMLES 280 Query: 275 GIEWEALLVEM-LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ------- 326 G + + + + I + + + + + + +I + IP ++ Sbjct: 281 GEDPRYVARRLCILASEDIGLAEPNAMNIASSLVSIIDFIGMPEGRIPLAEVTIYLALCP 340 Query: 327 ---LYYQTLLIGRKELPY 341 Y + +++ Sbjct: 341 KSNSAYNAINKAIRDIRN 358 >UniRef50_B4U6Y4 DNA polymerase III delta' subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6Y4_HYDS0 Length = 246 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 54 IARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 +A AKG+ CE C C +C+ I + D I I + K++D R++ + Sbjct: 32 LALSYAKGILCENKQ-PWGCKECYSCK-IFYEKHPDFIWIGKENSIKIDDIREISNFANL 89 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 P KV LI + + + NALLKTLEEPP ++KF++ + TI+SR + Sbjct: 90 KPNYSPNKVCLITNAQNMLKEASNALLKTLEEPPSYLKFIITADSLSNIIPTIVSRSIVL 149 Query: 174 HL-------KALDVEQIRHQL-EHILNEEHIAHEPRALQLL 206 L L + I + E I ++I +L+ Sbjct: 150 ELFERKTSKHPLCEKLISKRFYETIPQIDNIKDIKEKEELI 190 >UniRef50_C9KPY4 Replication-associated recombination protein A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPY4_9FIRM Length = 462 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 120/308 (38%), Gaps = 54/308 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ LAR+ RP+ F + VGQ+ + L + + +I + +F G G GKT++A Sbjct: 38 TFEPLARRMRPRNFDEFVGQQEAVGRGHFLRRMIEMDQIP-SIIFYGPPGTGKTTLA--- 93 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPAR 117 + I +++A S + D R ++ + Sbjct: 94 ---------------------QMIAAMTDSAFEKLNAVSA-GISDLRRIVKEADEARRYY 131 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 R + IDE+H ++ + LL +E+ + + ATT+ ++ +LSR L Sbjct: 132 QRRTIVFIDEIHRFNKSQQDVLLPYVED--GRLILIGATTENPFFEVNHALLSRVRIVRL 189 Query: 176 KALDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS- 227 L Q+ L L +E H+ L +A+ A G R AL+L + A A Sbjct: 190 YQLTDAQLVEVLRRALKDEERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLLEGAAAML 249 Query: 228 --GDGQVSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARG 275 G V+ + + G D A + +++M ++ + + + A G Sbjct: 250 PTTGGTVTLDMLEEITGERVQRYDKTGDNHYDTASAFIKSMRGSDPDAALHYLARMLAAG 309 Query: 276 IEWEALLV 283 + + + Sbjct: 310 EDVKFIAR 317 >UniRef50_C9R585 DNA polymerase III subunit tau n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R585_AGGAD Length = 174 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 1/171 (0%) Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 E YRW+ + P + E P +K A+ + TPEL K+ +D WA + Q + Sbjct: 4 EDYRWEWSNPELANIEQGPKPSEIKAAILQDITPELQQKIVNLTQTQDRWAQLIEQSGVE 63 Query: 534 KLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 L ++ ALN + +E+D L +RSS HLN+ ++ L +ALS++ + LT+ +D Sbjct: 64 NLTKEFALNTFIWQENDAEFKLGVRSSHGHLNHDKHRKLLQQALSVVLQKEIALTVEIND 123 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + TP ++R+ Y + QA++ ++ D +Q L R FD ++D +SIRP+ Sbjct: 124 DEQYLTPTDYRRKTYAQLREQAKQDLLQDEKLQLLEREFDCQVDVKSIRPV 174 >UniRef50_B4DAI3 DNA polymerase III, gamma/tau subunits n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAI3_9BACT Length = 328 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 125/350 (35%), Gaps = 45/350 (12%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 + + L + + R+ HAYL +G G GK R LA + C I R Sbjct: 6 DEAFSLLQSAQAQNRLAHAYLITGPIGSGK----RALANRV-CTLLIG----------RP 50 Query: 82 IEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 +E + D+ I+ S R +E R+L ++ G K+ +I + L ++ NA Sbjct: 51 VENLQHPDIHVIEPESKSRRILIEQMRELERSLHMRSLSGGHKIGVIVDADRLQPNAANA 110 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD-------VEQIRHQLEHIL 191 LKTLEEPP LL ++ P +L TILSRCL+ L++ + ++ L+ Sbjct: 111 FLKTLEEPPGQSSLLLLSSLPDQLLETILSRCLEIPLRSTEAHRATPLQTKLLTALQAHS 170 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 +E A +L+ R+ +L +A + + +A Sbjct: 171 RQESPGL-VEAFRLV--------REFQTLLSEARETIQDDADASLKAEEQHYKQTSEAGK 221 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA----LGNDMA 307 +E + + + AAR +LL + Q + D Sbjct: 222 WLED--REDYYKALVESRYVAAR----HSLLETLEQWWADALRQQAAHTTGQPVASLDHP 275 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA-PDRRMGVEMTLLRA 356 L T + R L + ++ +E LRA Sbjct: 276 IFATDTAALGARHSTTTLLRKSDAFETLRGHLGNSGVQEQLALECAFLRA 325 >UniRef50_A3WR60 DNA polymerase III subunits gamma and tau n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR60_9BRAD Length = 750 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 17/243 (6%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG- 67 +++PQ+F D++G + + L + R + G +GVGK ++ R+ AK L CE+G Sbjct: 388 RFQPQSFVDIIGHQVAVAGLQQRIRSDRHGAPLVLCGPKGVGKRTLGRIYAKRLLCESGT 447 Query: 68 -ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLI 125 + A+PCG C C+E E ++ +E DA + + + R +LL N+++ + GR V Sbjct: 448 NVDASPCGSCPTCKEFETRSPLEFVEFDAGASSAAQYVREELLPNLRFETSIGRRVV--- 504 Query: 126 DEVHMLSRHSFN-----ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 M++ N LKTLE+ F+ T + L SR + L AL Sbjct: 505 ----MITNPDSNPQLVEVCLKTLEKSSAVNSFIFTVTHVRGLSGAGQSRAEMYRLFALTP 560 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + R E L H+ + L ++ + G L D ++ + V Sbjct: 561 LESRRLAERFLGSAAYPHDSQVLDVILAESGGLPGRLRELCDCIQSTQSK--TLDEVRKA 618 Query: 241 LGT 243 LG Sbjct: 619 LGL 621 >UniRef50_Q5UQ47 Putative replication factor C small subunit R395 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS1_MIMIV Length = 319 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 29/255 (11%) Query: 41 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK 100 + +G+ GVGKTS R +AK L E +EI+AA Sbjct: 41 LIITGSPGVGKTSTVRCIAKELLGEDMSQG-------------------YLEINAAEDRG 81 Query: 101 VEDTRDLLDNVQYAPARGRF-KVYLIDEVHMLSRHSF----NALLKTLEEPPEHVKFLLA 155 V ++ K+ L+DE +++ N + K KF+ Sbjct: 82 VRSISTIIPPFCKKVFAANKSKIILLDEADIMTSKCQYDINNMIKKF----GRKTKFIFT 137 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 D K+ I S C K L EQI L I E I ++ + L+ + + G +R Sbjct: 138 CNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGLRTICYISNGDMR 197 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 +++ Q A +++ V + D + ++ +E+N E+ ++N Sbjct: 198 KSINDL-QKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNLEKADEIMNNIIKLD 256 Query: 276 IEWEALLVEMLGLLH 290 + ++ + +L Sbjct: 257 YCYFDIVTSFIYVLK 271 >UniRef50_D2MMU8 Conserved domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMU8_9FIRM Length = 318 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 52/341 (15%), Positives = 117/341 (34%), Gaps = 42/341 (12%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + L HAYLF G +A A+ L C + CG+C +C Sbjct: 2 QTMAYQQIERTLRNQNFSHAYLFVGNAHQDMRDLATFFAQSLLCSK--SDIACGICGSCE 59 Query: 81 EIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARG--RFKVYLIDEVHMLSRHSFN 137 + QG+ D ++ ++ +L + +V ++ + S + N Sbjct: 60 RVIQGQHPDYQHLNGEEKAISKKEIDELQNYFSKTAVENAKGRRVCFLEHMETASLSAQN 119 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLK LEEP + V +L+ + T++SRC+ + ++++ +++ L+ L + Sbjct: 120 SLLKFLEEPSKGVVIILSVPKESSILPTLVSRCIPIYFQSVNQKEL---LQQAL---KLG 173 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL---DDDQALSLVE 254 + L+ ++ +++ + + ML + + Sbjct: 174 YGQEDAYFLSLISQ---------SEEELKQNHEKEEYAKAILMLKESLEQPQELLVDYHV 224 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++ + + + L+N + + + M + D + Sbjct: 225 SLKPKDKDSHLFLLNTYF-------HFV---AQAMRQALMKEEVGPTWLVDYIRKAKDDK 274 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 E A + Y ++ L D + E T+ + Sbjct: 275 EQA---------MVYALVMEALDRLNKYNDPTLLFEQTIYQ 306 >UniRef50_Q043K3 Helicase subunit of the Holliday junction resolvase related ATPase n=11 Tax=Lactobacillus RepID=Q043K3_LACGA Length = 429 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 122/313 (38%), Gaps = 71/313 (22%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ + VGQ+ ++ L + + + L G G GKTS+A+++A+ Sbjct: 8 KPLADLIRPKDLSQFVGQKDLIEEGRPLYQIIKK-HVPISLLLWGPPGTGKTSLAQIIAR 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEID---AASRTKVEDTRDLLDNVQYAPAR 117 E D A +++ L + P + Sbjct: 67 -------------------------------EFDYPLATFNASIDNKAKLTQIINTYPYQ 95 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 V LIDE+H ++ + LL LE + + ATT+ + + SRC F Sbjct: 96 S--FVLLIDEIHRMTTTLQDFLLPYLEN--GRILLIGATTENPIMSIVPAVRSRCQIFEF 151 Query: 176 KALDVEQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 KAL E I L L E E+I + +A++++A +A+G LR AL+L + A + Sbjct: 152 KALSDEDIEQVLIRALKEVFHFKDENI--DRKAVKIIAISADGDLRVALNLLETIHAV-N 208 Query: 230 GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 +S + V + T D + +++ ++ + + + G Sbjct: 209 EDLSVEEVKQFVKGQHFAYDRKATKHYDYLAAYSDSIAGSDTDAALYYLAVLLKNG---- 264 Query: 280 ALLVEMLGLLHRI 292 ++ ++ R+ Sbjct: 265 ----DLASVVRRL 273 >UniRef50_B9KAJ9 DNA polymerase III, gamma subunit-related protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KAJ9_THENN Length = 350 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 21/212 (9%) Query: 89 DLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 D++EID +++ R + D + Y+P K ++ + +++ + NA LKTLEEPP Sbjct: 96 DVLEIDPKGENIGIDEIRSIKDFLNYSPELYSRKYVIVHDCERMTQQAANAFLKTLEEPP 155 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 E+ +L T L TI SR + ++ + E +E + + L LL Sbjct: 156 EYAVIVLNTRHWHYLLPTIRSRVFRVSVR-VPRE------FWEAVKEKLGNLWEELPLLE 208 Query: 208 R---AAEGSLR----DALSLTDQAIASGDGQVSTQAV-SAMLGTLDDDQALSLVEAMVEA 259 R A S R LSL + + G Q+ + + + G L L+E + +A Sbjct: 209 RDFSMALESYRSGREKILSLLENVKSLGSNQLLKKVMAKDLEGYLACR---ELLERLSKA 265 Query: 260 NGERVMALINEAAA--RGIEWEALLVEMLGLL 289 + L ++ G + L+ +M+ ++ Sbjct: 266 EPKGFFDLFDQVVNTITGRDAFLLIQKMVRIV 297 >UniRef50_Q7V4G3 DNA polymerase III, delta prime subunit n=2 Tax=Prochlorococcus marinus RepID=Q7V4G3_PROMM Length = 326 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 115/368 (31%), Gaps = 80/368 (21%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F D++ Q + L LS GR+ AYLFSG GVG++ A +GL Sbjct: 11 FEDLIAQPLAVALLEAALSQGRLAPAYLFSGPDGVGRSLAALRFLEGLISSGKPAL---- 66 Query: 75 VCDNCREIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDNV 111 R +E DL+ ++ + ++E R + + Sbjct: 67 --RERRRLEAFNHPDLLWVEPTYQHQGRLVPKSQAEEEGVNRRSPPQVRLEQIRGVTRFL 124 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P + +I+ + + NALLKTLEEP H +L +T ++L TI SRC Sbjct: 125 GRRPVEAPRGMVVIEASESMPEAAANALLKTLEEP-GHGLLILLSTASERLLKTIRSRCQ 183 Query: 172 QFHLKALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 Q L+ ++ L E + L A GS L Sbjct: 184 QILFARLEAADMQAALARTSTAEMGSSLLALDQPELVAMAAGSPGALLQNFG-------- 235 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAM-VEANGERVMALINEAAARGIEWEALLVEMLGLL 289 QAV +++ +EA+ + + + + ++ Sbjct: 236 --LWQAVPEEFWLRLEERPQKPMEALALARDLTEALNGEQQLW------------LIDWW 281 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + +Q + L R L R+ Sbjct: 282 QQHFWIQRPDPTP--------------------------LKRLERLRSHLLGFVQPRLAW 315 Query: 350 EMTLLRAL 357 E+ LL + Sbjct: 316 EVALLELI 323 >UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4_GEOSL Length = 440 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 121/308 (39%), Gaps = 52/308 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + VGQEH+L L + + + +F G G GKT++AR++A Sbjct: 17 PLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLT-SLIFWGPPGSGKTTLARVIANA 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 +A + +++ R+++ + RGR Sbjct: 76 ----------------------TKSHFIFF---SAILSGIKEIREIVKEAEEEKKYRGRN 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 + +DE+H ++ +A L +E + ATT+ ++ +LSRC L L Sbjct: 111 TILFVDEIHRFNKSQQDAFLPYVER--GTFTIIGATTENPSFEVVAPLLSRCKVLVLNPL 168 Query: 179 DVEQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDG 230 E + L L + +A + AL +A + G R AL+ + A +G Sbjct: 169 SQENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNG 228 Query: 231 QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 ++ ++V + G + + +++M ++ + + + G + Sbjct: 229 RIDLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLF 288 Query: 281 LLVEMLGL 288 +L M+ L Sbjct: 289 ILRRMVIL 296 >UniRef50_A0A7T3 HolB-like ATPase involved in DNA replication n=1 Tax=Microcystis aeruginosa phage Ma-LMM01 RepID=A0A7T3_9CAUD Length = 367 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 115/332 (34%), Gaps = 56/332 (16%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIH-----HAY-----LFSGTRGVGKTSI 54 L+ + RP+ AD VG + +L L +H + Y L G G GKT++ Sbjct: 8 SLSNEHRPRRLADYVGGGLAV-SLVKALISRNLHSSAGNNVYSAGNMLMWGPPGCGKTTL 66 Query: 55 ARLLAKGLNCETGITA--TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 A L A+ C CG C C + LD + Sbjct: 67 ALLYARSTLCPNRKPGSWEGCGECPVCLGTDTTNIYHYTISSPTEARP--HIERFLDIAR 124 Query: 113 YAPA-----RGRFKVYLI-DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT- 165 +P +++ ++I DE +S + LL+ +E P H ++L T D QKL Sbjct: 125 ASPVIVGDREDQYRQFIILDEFQRISPELASLLLEAIEFGPNHTSWILCTMDKQKLMANK 184 Query: 166 -----ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL 220 I RCL+ L ++ + ++ I + E A Q L + A GS A SL Sbjct: 185 VTSQAIERRCLEVPLYNPPIDDMAGRICDI-----MNIELEAAQALVKLA-GSAGRAWSL 238 Query: 221 TDQAIASGD-GQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMA------------ 266 ++ + ++ V + G + + A+ ++ V A Sbjct: 239 LERLLLVNTVEDITYDLVYDELAGGATVEGRAAFWSALARSDVRTVRAYIKMWQLDVNGE 298 Query: 267 ---------LINEAAARGIEWEALLVEMLGLL 289 +IN E LL ++ Sbjct: 299 VIAGLLVEDIINRITGPNPSIERLLADLARWW 330 >UniRef50_C4FVD1 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD1_9FIRM Length = 317 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 30/335 (8%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 E + A + G + HAYL +G K ++ LA+ C P + Sbjct: 7 EALKAYFAQQVEEGHLAHAYLLTGGDMTSKRAVMTALAQDYFCADS-AGDPR---TIRQR 62 Query: 82 IEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 I ++ D+ ++A +T KV+ R+L + + +P GR K +I++ L+ S NALL Sbjct: 63 IADNQYADIYYLEAQGQTLKVDQVRELKEWLGQSPLEGRGKFAIIEQAERLNASSANALL 122 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 LEEP ++V L + L TILSR HL + + + E P Sbjct: 123 TVLEEPVDNVYLFLWSPSANLLLPTILSRVQVLHL------EAPDRQAQAADWEAHGVLP 176 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 Q+LA E ++ S + A + L D ++L + + + Sbjct: 177 VHAQILAGFREETVARWTSDYE-ATQFEQAIKTWNGWYRQLVMGDPMAFVALQTRL-KGD 234 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + G++ L L H++ + AA + + + Sbjct: 235 LTQ---------QGGLDLADYC---LRLTHQLL----TKAAAYDFQGHFLTDLAKQ-GLP 277 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 D+ Q LL ++ + ++ +E +LR Sbjct: 278 SQADLLRVNQLLLEAKQRILANVSPQLALEQCVLR 312 >UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD32_9GAMM Length = 344 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 63/352 (17%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR- 86 L + + HA L +G+ +GK + + L K L CE C C CR I + Sbjct: 13 LKQMIDQNHLPHALLITGSEQMGKFELMQQLVKTLLCEE----ETCDQCVLCRAISKDNP 68 Query: 87 --------------FVDLI----EID----AASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + +++ E++ + +++ R + + ++ + Sbjct: 69 KQALDDSVLIRRSHYPNMVYCRTEVNDKGVESKNIRIDQIRAFCEALNK--TADNLQIGV 126 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + ++ + N+LLKTLEEP E+ +L DP+ LP TILSRC H+ ++ Sbjct: 127 LFYADQMNISAANSLLKTLEEPRENTLIILLAHDPKNLPATILSRCQSVHIPPAYDQETE 186 Query: 185 HQL-EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS-AMLG 242 L + I +H + + L G LS SGDG + Q +L Sbjct: 187 AWLAQRIGEAQHTDFD---VTQLLEHTHGVPFKVLS-----ELSGDGFIHYQHWQNQLLD 238 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ +E E N V+ + GI + L Sbjct: 239 IAAHPLMINQLEDF-EGNEVAVLNCLQNLVIEGIRLKTL--------------------- 276 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + ++ + + + + + ++ ++ L+ Sbjct: 277 --NHEGGLIELNKVVKGVDSDFLFKLLSDIYHALGLSKTNVNIKLLLDNILI 326 >UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-like ATPase n=4 Tax=Leptospira RepID=Q04QW6_LEPBJ Length = 423 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 123/328 (37%), Gaps = 56/328 (17%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LA K RP F +V+GQ L N R + + G G GK+++A +L Sbjct: 12 PLAHKIRPSGFEEVIGQTRATKQLVNY----RSPVSIILYGPPGTGKSTLAGIL------ 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 CR+ + +E +A S T V + + LL+ + + Sbjct: 62 --------------CRKWN----LPFVEYNAVS-TGVSEIKKLLERAEREGTI----LLF 98 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALDVEQ 182 +DE+H S ++LLK +E H+ + ATT+ ++ +LSRC ++ L E+ Sbjct: 99 LDEIHRFSASQQDSLLKGVE--TGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEE 156 Query: 183 IRHQLEH-ILNEE-HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVS 238 LE I N E I P A + L R + G R LS + S +S V Sbjct: 157 QSLLLERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVE 216 Query: 239 AML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L G D + ++++ ++ + + + G + ++ ++ Sbjct: 217 EYLESRVIEYDKSGESHYDVISAFIKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLI-- 274 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMREL 316 I + A N + + L Sbjct: 275 ---ILASEDVGNASVNGLPLAVSGLHAL 299 >UniRef50_A5CPG9 DNA polymerase III, delta' subunit n=7 Tax=Actinobacteria (class) RepID=A5CPG9_CLAM3 Length = 414 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 130/358 (36%), Gaps = 48/358 (13%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + H++L +G G G++++A A L TP G R++ DL + Sbjct: 58 LAHSWLITGPPGSGRSNLAYAFATALL----SDGTPEGDAATARQVAARSHPDLGVLATE 113 Query: 97 S-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 +++ R L+ + QY+P+ GR++V ++++ ++ + N LLK LEEPPE ++L Sbjct: 114 RVIIAIDEVRALVTSSQYSPSVGRYRVMVVEDADRMTERTSNLLLKALEEPPERTIWILC 173 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 L TI SR L+ VE + ++ + AR A+ + Sbjct: 174 APSEADLIPTIRSRVRSVRLRIPSVEDVAALIQR-----RDGVDAATATRAAREAQSHIG 228 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN--------------- 260 A L A A + + + D +A + + + + Sbjct: 229 MAHRLATDAEARERRSRTLELALGIRSVGDAVRAAAAMLELAGQDAKAFTVQRDADERER 288 Query: 261 -------------GERVMALINEAAARGIE---------WEALLVEMLGLLHRIAMVQLS 298 ++ + I + + +LV+++ L + + QL Sbjct: 289 ALRSLGVQEGGSIPPQLRSQIRQLEEDQKRRATRSLRDGIDRILVDLMSLHRDVLLHQL- 347 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L AAI R+ E A + + R+ + + +E L+ Sbjct: 348 GADLPQVNAAIAPRIAEAAEAGSAAASLAVLDAVGVARRRIDGNVSPALALEAMLVSI 405 >UniRef50_Q5FHH2 DNA polymerase III subunit gamma n=5 Tax=canis group RepID=Q5FHH2_EHRRG Length = 296 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++G + L ++ +I ++L G+RG+GK ++A A+ + T Sbjct: 2 DTIIGHKLAKHTL---INNPQI-QSWLLYGSRGIGKATLAYNFAQHITQFTDF------K 51 Query: 76 CDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C N DL+ I D +E R++ + + + AR K+ +ID + L+ + Sbjct: 52 CHN---------PDLLIIGDNEGIIGIEKIRNIKNFLYLSTARSHNKIVIIDSIDNLNIN 102 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 + NA+LK LEEPP + +L + + +PV I SRC L L+ + + L+ I Sbjct: 103 ATNAILKILEEPPNNSIIILISHNLHAVPVVIRSRCFLLGLSDLNTSETQQVLQTI 158 >UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F86 Length = 422 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 72/358 (20%), Positives = 134/358 (37%), Gaps = 82/358 (22%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M + LA + RP+ D++GQ H++ L + +G++ + + G GVGKTSIA Sbjct: 1 MKKEPLAYRMRPKKIEDIIGQSHLVGDGKLLRRMVDVGQLS-SMILYGPPGVGKTSIATA 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +A G T TP ++A K + ++ A A Sbjct: 60 IA-------GSTDTP-----------------FKLLNAVVHNKKD--------MEIAVAE 87 Query: 118 GRFK---VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA---TTDP-QKLPVTILSRC 170 + + ++DEVH L + + LL LE +L T +P + I SRC Sbjct: 88 AKMHGQLIVILDEVHRLDKAKQDFLLPHLE----KGLIILIGATTANPYHSINPAIRSRC 143 Query: 171 LQFHLKALDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 F L++L + I+ L + +E I E A+ LA G +R AL+ + Sbjct: 144 QIFELESLTPDDIKTALIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALEL 203 Query: 224 AIAS------GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMAL 267 A+ S G +S + + + G D + +++ ++ + Sbjct: 204 AVKSTFATEDGIKHISLETAESCIQKKSFHHDKDGDAHYDVLSAFQKSIRGSDVNAGLHY 263 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + G ++ + R+ ++ + +A + +R LA + Sbjct: 264 LARLLEAG--------DLTSIARRLLVI----SYEDIGLANPQAGVRTLAAIESAERL 309 >UniRef50_A4A8H5 DNA polymerase III, delta prime subunit n=1 Tax=Congregibacter litoralis KT71 RepID=A4A8H5_9GAMM Length = 288 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 8/236 (3%) Query: 42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SR 98 L G G G+ +A LA+ L C CG C C G DL+ + A Sbjct: 2 LLEGQPGTGRNRLALALARFLLCSQPGVEGNCGECKTCTLSASGALPDLLSVGPAEEGKA 61 Query: 99 TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 + R+++ P+ GR+KV LI L+ +FNA LK LEEP +L + Sbjct: 62 IGINAIREVIRFAAGTPSLGRYKVILITPAESLTTAAFNAFLKCLEEPASETFIILVSAR 121 Query: 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218 LP TI SRC ++ L + + E + L+ L + + A +L G DAL Sbjct: 122 GFPLPATIRSRCQRWQLPSPEEEAAQEWLKKELGQ-QAEADGAASAML-ELCNGRPLDAL 179 Query: 219 SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 S Q + +L L +A+ + + + A R Sbjct: 180 SKL-QGEEREPLLAMHRCAREVLHQGRKSTLLE--QAVAGVEPDSALDAMESALQR 232 >UniRef50_Q3AG11 Putative DNA polymerase III, delta prime subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AG11_CARHZ Length = 267 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 36/249 (14%) Query: 31 GLSLGRIHHAYLFSGT--RGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 L+ ++ HAYL + V AR A+ + ++ + E G Sbjct: 8 ALNQDKLSHAYLLTSPVLEAV--VDFARRTAREILIKSANDPV-----EAANLFEAGTHP 60 Query: 89 DLIEIDA-ASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 D + + S K+ + L+ V P +G KV +++EV ++ + NA LKTLEEP Sbjct: 61 DFLWLAPDGSSFKIWQVNEVLIPKVYLTPQKGSRKVIVLEEVDKMTLDAANAFLKTLEEP 120 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE---------EHI- 196 P V +LL T P+K+ TI SRC + + E Q + + E Sbjct: 121 PAGVTYLLIATMPEKVLPTIHSRCQKV---KVSAEDFTGQYKGYAEKFYELLTLPWEEFY 177 Query: 197 ----AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM---LGTLDDDQA 249 L L A E LRDAL + G ++ + L L +++ Sbjct: 178 KKTEKITREELNNLLLAGELILRDAL-----IVDKGSEKLFYPDLFDKARELNRLGEEEI 232 Query: 250 LSLVEAMVE 258 L+ + + Sbjct: 233 YRLLNRLED 241 >UniRef50_Q081I0 DNA polymerase III, delta prime subunit n=14 Tax=Shewanella RepID=Q081I0_SHEFN Length = 327 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 117/295 (39%), Gaps = 31/295 (10%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 G+ HA+LF+ + +G +A+ A+ + C+ CG C +C + G DL I Sbjct: 25 RGKSSHAHLFNIDKALGGDKLAKAAAQTVLCQQLTPVGACGQCKSCLLLAAGNHPDLYII 84 Query: 94 DAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 + KV+ R L + +G +V +I L+ + NALLKTLEEP + V Sbjct: 85 EPDGNQIKVDQIRQLCQALTQTAQQGGARVAIIVNAERLNLAAANALLKTLEEPGDDVVL 144 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 +L T +L TI SRC + +I L ++ + A+G Sbjct: 145 ILQTNTSAQLLATITSRCQTLNFVEPTKHEIHQWL---ATQQLLPP---------ANADG 192 Query: 213 SLRD---ALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 + D LS+ +A + +++Q +L +++ + + ++ Sbjct: 193 KIHDVTWCLSVVGGPLALANS-LTSQHYQQLLTFR-----QDWAQSLQTGHLSNSLLKVS 246 Query: 270 EAAARGIEWEALLVEMLGLLHRIAM----VQLSPAALGNDMAAIELRMRELARTI 320 E + L + L + + V+ + + ++ ++ ELA + Sbjct: 247 E-----QQIVDALNVLYLYLRQYVLKSNKVKTENTSRQSLNPLVQSKVIELAGRV 296 >UniRef50_C7CMJ3 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CMJ3_METED Length = 809 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 30/303 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHA--------YLFSGTRGVGKTSIARLLAKGLNC 64 QTFA V+G+ H + L HA L G GVGK ++A A+ + C Sbjct: 459 QTFATVIGRGHAVAELRR--------HARARTDGVDLLLHGPDGVGKRTLAWSYARMVLC 510 Query: 65 ETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGR--- 119 CG C +CR E G+ IEID A ++ R L+ VQ A Sbjct: 511 TQPSPDGGACGACRSCRAFETGQS-GCIEIDGA-HPDIDKLSRHLVMRVQTAELVVSEVV 568 Query: 120 ---FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 V++I F+ LLK +E+ +F+L D + + + SRC + ++ Sbjct: 569 LPIRHVFVIHNADRYPPAMFDRLLKPMED-SGRARFVLLARDRRAVRMAGRSRCFDYRVR 627 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L + LE + A++ L L+ A+EG L + I +G G Sbjct: 628 PLQRSEAEAFLEKYFDVGGRAYDAAMLALVIDASEGRPNRLRRLGE--ILAGPGPSGLVD 685 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI-AMV 295 + A LG + + A+V A ++N + + + E + R+ A++ Sbjct: 686 MCARLGLDWAESFVRHWPAIVAAATSASAGVVNASGVDRTDIDRTEAERAERVRRVQAVL 745 Query: 296 QLS 298 QL Sbjct: 746 QLV 748 >UniRef50_A5EXC7 DNA polymerase III, delta' subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXC7_DICNV Length = 316 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 62/344 (18%), Positives = 109/344 (31%), Gaps = 52/344 (15%) Query: 32 LSLGRI-------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 L+ R+ H LF + A+L A + C C C +C IE+ Sbjct: 9 LAHNRLNLYTKQPPHCLLFIDPQQQNAFFTAQLFAAAVLCFHAHQGIACHDCQSCHLIER 68 Query: 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 G D K+E+ R L+ PA +V + ++ S + N LLKTLE Sbjct: 69 GTHPDAFFY--PQPIKIEEIRALITKTTMTPALSARRVVFLGQIDDYSEEALNTLLKTLE 126 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP H F+L+ + + TI+SR L E L+ +A Sbjct: 127 EPSPHSLFILSARNRHAVKATIISRAHCISLVKPRFEDALAWLQE------QGFSEKAAT 180 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV-EANGER 263 R + A + L + Sbjct: 181 AALRYSHHDPYRAAQYLKNESFR-----------------PFELLTLLADFFAYPQEYCA 223 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 ++ ++ + A E ++ + L ++ ++ L LA + P Sbjct: 224 LLEVLEKIPA-----EHIVDVLTVHLEQLITIK----QLDIVPPDWHN--LRLAERLKPA 272 Query: 324 DI---QLYYQTLLIGR----KELPYAPDRRM-GVEMTLLRALAF 359 D+ Y L R ++L + ++ +E+ LR + Sbjct: 273 DLANMHRVYAKLCQLRRPNQRQLNLVLNAKIFLLELFNLRMKSL 316 >UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campylobacterales RepID=D1B0W0_SULD5 Length = 396 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 45/293 (15%) Query: 10 WRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 +RP+ ++ GQ+H+ + L G + HA LF G GVGKT++AR++A L Sbjct: 9 FRPKVIEELSGQKHLSGENSPFRKLLKSGSMSHA-LFFGPAGVGKTTLARIVANTLQ--- 64 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 + E+DA S KVE+ R +L Q+ A + ++ ID Sbjct: 65 ---------------------LPFYELDATS-IKVEEIRKIL--SQHRGALQKPLIF-ID 99 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT-ILSRCLQFHLKALDVEQIRH 185 E+H LS+ LL +E E + +T +P + + I SR + F L+++ + Sbjct: 100 EIHRLSKTQQEVLLLPMEN-HEAIVIGASTENPYFVLSSGIRSRMMLFEFYPLEMKDMEA 158 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML---- 241 LE + + + A + L R++ G R L+L + A+ D V+ Q + A+ Sbjct: 159 ILERVHEKIEFQIDEEAREYLIRSSAGDSRSFLNLLEFALKV-DLHVNMQTLKALRPSAL 217 Query: 242 --GTLDDDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALLVEMLGL 288 G D+ +L+ AM++ ++ + + + G + + ++ L Sbjct: 218 KDGVSSDNTHYNLISAMIKSVRGSDVDAALYYLARLIDGGESPDFIARRLVIL 270 >UniRef50_A6D7X6 DNA polymerase III subunit delta' n=1 Tax=Vibrio shilonii AK1 RepID=A6D7X6_9VIBR Length = 318 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 103/295 (34%), Gaps = 35/295 (11%) Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARG 118 L C+ + PCG C C ++ D+ + K VE R + G Sbjct: 48 LMCQNDK-SEPCGFCHCCDLLKASGHPDVHYVLPEKDKKSLSVEQIRQANKWALESSQFG 106 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++V +I + ++ + NALLKTLEEPP F+L+T + + L TI SRC +H+ + Sbjct: 107 HYRVIVIPQADRMNASAANALLKTLEEPPAQCLFILSTENTKLLLPTIRSRCEVWHVSSP 166 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + E + R + A+ +ST+ Sbjct: 167 SEQMCID---WVSQEIGKSV---------------PRHS------ALLCHFEPISTRQFV 202 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + + + ++G I E ++ L + + Sbjct: 203 ESGQDKEYQALIGAFIGFIRSDGLDTNEFITTLMKNSSELST---QLNWLW--LLLSCAQ 257 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++LG D+ ++A + + Q+L ++L + E+ + Sbjct: 258 KSSLGIDIRTSLPEASQIAEVYGYESLYTHSQSLQSLSEQLR--SFPGLNTELLV 310 >UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacteroidetes RepID=C0BGA7_9BACT Length = 425 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 128/312 (41%), Gaps = 53/312 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ LA + RP++ + GQ+H++ +L +S G + + +F G G GKT++A+L Sbjct: 1 MN-TPLAERMRPKSLGEYFGQDHLVGPKGSLTQMISNG-VFPSLIFWGPPGTGKTTLAQL 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-- 115 LA P ++ +A V++ R+++ +++ Sbjct: 59 LA-------LEKERP-----------------FYQL-SAINAGVKEIREIISKAEHSGGL 93 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQF 173 G+ + IDE+H S+ ++LL +E+ + + ATT+ ++ +LSRC + Sbjct: 94 FSGKSPILFIDEIHRFSKSQQDSLLNAVEK--GIITLIGATTENPSFEVINALLSRCQVY 151 Query: 174 HLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTD---QAIA 226 L L E + L H L ++ I + + + L A G R LSL + QA + Sbjct: 152 VLNTLKKEDLEKILNHALEKDSIIKEYKIQLKETEALIELAGGDARKLLSLLELVIQANS 211 Query: 227 SGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 ++ V + G D + ++++ ++ + + G Sbjct: 212 KEKLILTNDLVFETVQTNSVLFDKNGDFHYDIVSAFIKSIRGSDPNGAIYWLARMIEGGE 271 Query: 277 EWEALLVEMLGL 288 + + ML L Sbjct: 272 DIGFIARRMLIL 283 >UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H148_9FIRM Length = 411 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 53/301 (17%) Query: 11 RPQTFADVVGQEHVLT--ALA-NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 RP+ D +GQEH L AL N + GR A +F G G GKT++AR++AK Sbjct: 9 RPERLEDFIGQEHFLKKNALVYNAIKEGRFESA-VFYGPSGTGKTTLARIIAKM------ 61 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--QYAPARGRFKVYLI 125 + I+I+AA + + + +L ++ + + Sbjct: 62 QDDS------------------FIQINAA-DVGISELKKILAEAKDRFYGIISKSTYLYV 102 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCL-QFHLKALDVEQ 182 DE+H ++ ++LL LEE ++K + +TT+ ++ ILSR + K L + Sbjct: 103 DEIHRWNKSQQDSLLSALEE--GYIKVIASTTENPFFEINNQILSRIRNIYEFKPLANDD 160 Query: 183 IRHQLEH---ILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQ 235 I L+ I + I ++ AL L+A + G R AL + S G+ +++ + Sbjct: 161 IVKLLKRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIALDTLGFILNSLKGEDRITEE 220 Query: 236 AVSAM--------LGTLDD--DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 V + LDD + +L ++M ++ + + + G + + + + Sbjct: 221 KVYEITYDRQYMKFNKLDDKYNVFSALHKSMRGSDPDAAVHYLARLLQGGEDVKVIGRRL 280 Query: 286 L 286 L Sbjct: 281 L 281 >UniRef50_Q0AIK8 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosomonas RepID=Q0AIK8_NITEC Length = 354 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 71/350 (20%), Positives = 121/350 (34%), Gaps = 64/350 (18%) Query: 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEID 94 R HHA L G +G GK A L + + CE CG C +C EQG + ++ Sbjct: 24 RRHHALLLKGRKGTGKLGFALALVRSMLCEQVDAAGRVCGKCQDCYWFEQGLHPNFRLLE 83 Query: 95 AAS------------------------------RTKVEDTRDLLDNVQYAPARGRFKVYL 124 + + + R L D + + + R+KV L Sbjct: 84 PEALSVQDGTADRNSEEKQEEAGGTKSGKKPSQQITIAQIRTLDDFIYLSAHQNRYKVVL 143 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 I ++ + NALLK LEEPP V F+L +P TILSRC Q + D + + Sbjct: 144 IHPAEAMNAAAANALLKKLEEPPPEVLFILIAHGTSMIPATILSRCRQIAMPTPDRKLAK 203 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L ++ IA L + + S AL +Q + + + V Sbjct: 204 DWL----IQQGIAQPDFRLAM----SSFSPLLALHYDEQQSSPHADFIQSLCVPEKF--- 252 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + L E + + + V + + + + + LS Sbjct: 253 ---DPIGLAEKLYKQDLSSVTSWMQK-----------------WCYDLMSCHLSG--RVR 290 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ A I P + ++ L ++ + + R+ +E L Sbjct: 291 YHLQQMDAIKRQAAVIDPVAVGFLWRDLAASQQLAHHPLNPRLFLEEMFL 340 >UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Tax=Prevotella RepID=C9MR40_9BACT Length = 421 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 21/245 (8%) Query: 106 DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 +L + ++G +KV +I ++ S N LLK LEEPP+ FL+ +P+KL T Sbjct: 183 ELSRVLSLKSSQGGYKVSIIWRPERMNLTSANKLLKLLEEPPQGTIFLMVCEEPEKLLET 242 Query: 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI 225 I+SR + +K +D I L H EP A + +A A GS AL D Sbjct: 243 IISRTQRIDVKRIDDNAIEQALIH-----QRGIEPDAAKRIAHIAHGSWLKALETLD--- 294 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE-WEALLVE 284 ++ L + L+ N + + A G E +LV Sbjct: 295 -------TSNENREFL-----NMFQMLMRLCYLRNVKDLKRWSEVVAGYGREKERRMLVY 342 Query: 285 MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + + A L E + AR I ++ + +++ + Sbjct: 343 FQQQVRENFIFNFRNAELNYMTLEEENFAKNFARFINEANVIEINELFERANRDIGQNAN 402 Query: 345 RRMGV 349 ++ Sbjct: 403 AKVVF 407 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q K R F+DV+GQE L + R+ HA LF G GVGK ++A A L Sbjct: 34 HQATKDKER-MNFSDVIGQEATKQRLLQMIKEDRVPHAMLFCGPEGVGKMALAMAFANYL 92 Query: 63 N 63 Sbjct: 93 L 93 >UniRef50_Q2NAF5 DNA polymerase III delta prime subunit n=4 Tax=Sphingomonadales RepID=Q2NAF5_ERYLH Length = 320 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 34/215 (15%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 L+ R+HH ++ +G +G+GK+ A A+ L P G D+ Sbjct: 15 ALAGPRMHHGWILAGRQGLGKSEFALDAARQLVARGATAPQPDGE-----------HPDI 63 Query: 91 IEI-------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 + + V+ R + + P GR + +ID L Sbjct: 64 HLLSRPPKDDKEVRKRAEGKPFERKRNISVDQIRAMQRRLTTRPTLGRNRAIIIDPADDL 123 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLK+LEEPP F+L T +L TI SRC L Q+ E +L Sbjct: 124 EKGASNALLKSLEEPPVGTFFILVTHRLARLLPTIRSRCRVLRFNPLPDAQV----EKLL 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 EE + + + AA+GS A+ +Q +A Sbjct: 180 KEESPSSDAAVREAAVAAAKGSPGAAIKFIEQDLA 214 >UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacteria RepID=C4KSW2_BURPS Length = 436 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 130/302 (43%), Gaps = 50/302 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+T ADV+GQ H+L L G+ H+ + G GVGKT++ARL A Sbjct: 11 RPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGK-PHSMILWGPPGVGKTTLARLTAL 69 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR-GR 119 +CE I + A V+D R+ ++ + R GR Sbjct: 70 AFDCE------------------------FIALSAV-LGGVKDIREAMEQARDTLNRTGR 104 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DE+H ++ +ALL +E V F+ ATT+ ++ +LSR + LK+ Sbjct: 105 HTILFVDEIHRFNKAQQDALLPFVE--SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS 162 Query: 178 LDVEQIRHQLEHI--LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ----AIASGDGQ 231 L +++R L+ + +A + +A+ L A+G R L+L +Q A ++G Sbjct: 163 LAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222 Query: 232 VSTQAVSAMLGTLDD----------DQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 + V + + DQ +L +++ ++ + + + G + + L Sbjct: 223 IDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYL 282 Query: 282 LV 283 Sbjct: 283 AR 284 >UniRef50_A1B3Z3 DNA polymerase III, delta prime subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B3Z3_PARDP Length = 365 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 27/237 (11%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG---- 67 P+ A ++GQ+ + R+HHA+L SG RG GK ++A +AK L G Sbjct: 23 PRDAARIIGQDAAVADFLAAAQAHRLHHAWLISGPRGTGKATLAWNIAKWLLSGAGTPDL 82 Query: 68 --ITATPCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPA 116 P R I L + + V++ R L + A Sbjct: 83 TVPPDDP-----TIRRIRALSEPRLHLVRRPVDEKTLRLRAEITVDEIRRLQGFFHMSAA 137 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G +V +ID +++ + NALLK LEEPP+ LL P +L TI SRC + L Sbjct: 138 EGGHRVAIIDAADEMNQAAANALLKLLEEPPQASTLLLVAHQPARLLPTIRSRCRELRLH 197 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 L E + L + + A +L A + GS+ +AL L Q + +++ Sbjct: 198 PLSPEDMGQVLHD------LGLDHDAARLSA-LSGGSIGEALRLAGQDGLAVYQRIT 247 >UniRef50_C6NVZ6 DNA polymerase III delta prime subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVZ6_9GAMM Length = 327 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 99/294 (33%), Gaps = 27/294 (9%) Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPA 116 A L E G CG C +C + D + ++ RD L+ + Y P Sbjct: 49 AAALCLEPGADHAACGQCRSCLLLTHAEHPDYRRLAPLEDRDIGIDAVRDALEFLAYRPQ 108 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G + ID LS + NALLK LEEP LL++ +L TI SRCL+ Sbjct: 109 LGARRWLRIDSAERLSVAAANALLKGLEEPAPGAHLLLSSAASARLLPTIRSRCLRLPAM 168 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 D R L E+ + E A L + L A+ L Q G ++ + Sbjct: 169 PKDPAAGRAWL----VEQGVTAEEAA--QLIQFCSDRLLLAMRLHTQGW-LGQRHIALEK 221 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + + + LV+ ++ + ML + + + Sbjct: 222 LLELRHRPQANALFRLVDH----------------WSKSEQLPFFRELMLSVYGDMLSLH 265 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 L + N +R+ A + I Q L +E + +E Sbjct: 266 LGLDKIRNV--DYIQALRDAAAHWAVSHIWAELQGWLTLEREQRQHLQVQYILE 317 >UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepID=A5WC21_PSYWF Length = 439 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 125/312 (40%), Gaps = 55/312 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA++ RP+ +V+GQ H+L + + G + + + G G+GKT+IA LLA Sbjct: 13 IPLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVEHGHLP-SLILHGEAGIGKTTIAMLLAD 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 + P +A T V+ R++LD + G Sbjct: 72 AV-------GRP------------------FYPLSAINTGVKQLREVLDAGSSSGQGGLD 106 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 V IDE+H ++ +ALL +E + + ATT+ + +LSRC + L Sbjct: 107 FASPVVFIDEIHRFNKAQQDALLGAVE--SGDITLIGATTENPSFSVNNALLSRCQVYRL 164 Query: 176 KALDVEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGSLRDALSLTD---QAIASG 228 + LD QI L+ L+++ ++ + +AL +A A+G R AL+L + QA Sbjct: 165 QPLDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQASDHS 224 Query: 229 DGQVSTQAVS------------AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 + G D ++++++ ++ + + + G Sbjct: 225 KQPIVIDDALLSSVAQTTLQRYDKDGDQHYDIISAMIKSVRGSDPDAALYWMARMLVAGE 284 Query: 277 EWEALLVEMLGL 288 E + ++ L Sbjct: 285 PPEFIARRLVIL 296 >UniRef50_Q1IW28 DNA polymerase III subunit, putative n=3 Tax=Deinococcus RepID=Q1IW28_DEIGD Length = 316 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 36/227 (15%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDA 95 +A L +G VGK +A +A NC G+ CG C +CR + G DL+ ++ Sbjct: 25 GNALLLTGPARVGKRDVAFAVAAQHNCSGTRGMYGEACGSCPSCRALAAGVHPDLLLVEP 84 Query: 96 --------ASRTKV----------EDTRD----LLDNVQYAPARGRFKVYLIDEVHMLSR 133 A+R KV + R+ + + ++ P R +V ++D L Sbjct: 85 RATTTTGRAARRKVIPIGAILADRDKGREYETHVFEFLELRPTF-RRRVVVVDGAEHLGP 143 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLK +EEPP F+ D + + TI+SR + + I L Sbjct: 144 EAANALLKLVEEPPHGALFVFLAEDLRAVIPTIVSRSARLSVTPAPDPAIERILA----- 198 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ E +L+A AA A L D+ + + A+ Sbjct: 199 --LSGEVPDAELVAFAA----GRAGVLADREAVRSALADAAEFTQAL 239 >UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RHQ8_ARCPR Length = 499 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 137/375 (36%), Gaps = 61/375 (16%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGR-----IHH-AYLFSGTRGVGKTSIARLLAKGL 62 K+RP+T DVV L ++ + I L G GVGKTS+A LA Sbjct: 6 KYRPKTLKDVV---ADKDILERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALANTF 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA------ 116 +++E++A+ + + R ++ ++ Sbjct: 63 ------------------------GWEVVELNASDQRSWQIIRRIVGEAAFSETISSEGE 98 Query: 117 -----RGRFKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 GR K+ L+DEV +S+ +AL+K L+ P +L DP KL + Sbjct: 99 FLSSESGRLKLILLDEVDNISKKEDFGGESALIKLLKRKPRQPI-ILTANDPYKLSKELR 157 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 C K L +QI LE I E I + AL+L+A+ A G LR A++ QAIA Sbjct: 158 DLCEFVQFKRLRTDQIVKVLERICASEGIKADRNALRLIAQNAGGDLRAAINDL-QAIAE 216 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G ++ + V + + + +++ + + V + + E L Sbjct: 217 GRREIRAEDVV-VSKRMQETDVFKVMQKIFKRFDRTVYTDAMSLDESPEDLIVWIDENLP 275 Query: 287 ------GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 LL ++ + LG R+ A + + Q G + Sbjct: 276 LEYEGDELLRAYLVLSRADMFLGRVRRRGFYRLWRYATYLMTVGVAFAKQRAKGGFTKYQ 335 Query: 341 YAPDRRMGVEMTLLR 355 + +TL++ Sbjct: 336 R---PNIWQMLTLIK 347 >UniRef50_Q1QBV7 DNA polymerase III, delta prime subunit n=2 Tax=Psychrobacter RepID=Q1QBV7_PSYCK Length = 372 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 39/243 (16%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVCDNCREIEQGRFVDLI 91 + HA L +G +G+GK + L L C CG C++C+ + G L Sbjct: 35 QQSLPHALLAAGMQGMGKRAFVWRLVAWLLCRARDEHPLGACGHCESCQWLRSGTHPSLQ 94 Query: 92 EI--------------------------------DAASRTKVEDTRDLLDNVQYAPARGR 119 + +A+ + KV+D R L + Y +G Sbjct: 95 VLPLVSLPVNADSSAQKEALANSTKDKKSAKTASNASLKIKVDDIRALQPFI-YQGGQG- 152 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++ ++D ++ + NALLKTLEEP V L + P +L TI SR Q L+ +D Sbjct: 153 MRICVLDHAEKMTIAAANALLKTLEEPQAQVHLFLISDAPAQLLPTIKSRVQQLALQTID 212 Query: 180 VEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + L A A++ L + A G+ A++L QA + Sbjct: 213 PAVAVDYVTKALGSNVHREAVGTDAIEQLIQLANGAPLAAVALA-QAPWYSKRALWLTTW 271 Query: 238 SAM 240 A+ Sbjct: 272 QAL 274 >UniRef50_C7HUG1 DNA polymerase III, delta prime subunit n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUG1_9FIRM Length = 276 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 27/180 (15%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSI-----ARLLAKGLNCETGITATPCGVCDN 78 ++ L N + ++ +AY+F K S A +K + GI+ Sbjct: 1 MIEILENQIKNDKLSNAYIFE-----SKNSSYNLDKALEFSKSVFNNFGISTK------- 48 Query: 79 CREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 D I D ++ R L+ ++ P+ G+ K+Y+I + LS S Sbjct: 49 -----LEENPDFEIIKKDDKEKNISIKTIRILIKDMYLRPSNGKIKIYIIKDSENLSIES 103 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ--LEHILNE 193 NALLK++EE +++ + T + L TI SRC K+ + + L +IL+E Sbjct: 104 SNALLKSIEEAKDYIILIFTTNNAYSLLKTIRSRCQIISFKSQIENEFVDREKLSYILSE 163 >UniRef50_A3WQJ1 DNA polymerase III, delta prime subunit, ATPase n=1 Tax=Idiomarina baltica OS145 RepID=A3WQJ1_9GAMM Length = 294 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L R+ HAY F G ++A+ L C CG C C + Sbjct: 11 QHLLAAFKAQRLSHAYYFKQAPEQGTEALAQEFISLLLCRQ-PGQRACGRCKACLLRQAN 69 Query: 86 RFVDLIE--IDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+I+ +D S V++ R L + +G +V ++ + ++ + NA+LK Sbjct: 70 NHPDVIQFNVDEKHSTLGVDEVRRLTRFIHQTANQGGRRVIYLEVMDRMTEQAANAILKI 129 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 LEEPPE+V +LL+ P+++ T+ SR H+ E Sbjct: 130 LEEPPENVVWLLSVEQPERILATLRSRMQWIHIALPKPE 168 >UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH3_SYNAS Length = 478 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 118/316 (37%), Gaps = 57/316 (18%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP+T + GQEH+L L + R+ +F G G GKT++AR++ Sbjct: 37 SRRPLADRMRPETLDEFFGQEHLLKKHSLLRRAIEEDRLFSV-IFWGPPGSGKTTLARIV 95 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A G T + A + V++ R +++ + Sbjct: 96 A-------GET----------KAYFAAFS--------AVLSGVKELRKVVEEAEARWQNN 130 Query: 119 RFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 R K V +DE+H ++ +A L +E + + ATT+ ++ +LSRC L Sbjct: 131 RQKTVLFVDEIHRFNKAQQDAFLPHVE--SGLITLIGATTENPSFEVIAPLLSRCRVLVL 188 Query: 176 KALDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS- 227 K E + L +L + + + AL L A+G R AL+ + + Sbjct: 189 KPFSDEDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLL 248 Query: 228 -----GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAA 272 ++S V L G + + +++ ++ + + + Sbjct: 249 AAGEGQSSRISRVQVEEALQKKGLQYDKSGAEHYNLISAFHKSLRGSDPDAALYWLGRML 308 Query: 273 ARGIEWEALLVEMLGL 288 G + + M+ Sbjct: 309 TAGEDPLYIARRMVRF 324 >UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU Length = 294 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 118/305 (38%), Gaps = 38/305 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++RPQ +VVGQE ++T N + H +F G GVGKT++A +A Sbjct: 3 WTEEFRPQNLDEVVGQERIVTFFRNLGKSDISKWPHV-IFYGPPGVGKTTMAHAIA---- 57 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEID--AASRTKVEDTR-DLLDNVQYAPARGRF 120 D+ ID A+ K++D + V+ P +G Sbjct: 58 ----------------------NEYDIEIIDMNASQYRKIDDMENQIFSIVKQIPEKGAR 95 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +DE L+ +S L + +E+ F+ A K+ + RC +F+ LD Sbjct: 96 KILFMDEADALTPNSQWLLRRMMEDYSNVTLFMFACNYDAKIIPALYDRCAEFYFNGLDS 155 Query: 181 EQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E ++ +I E L L +++GS R +L Q + G ++ +S Sbjct: 156 ESLKKVAINICQSEGRDVPSEDTLNKLIESSDGSARSFTNLLFQYLVGGTMPETSFKISE 215 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLS 298 L + + + + + + ++ + G ++E ++++ ++ + Sbjct: 216 YLKAIKLNDLENAKKIVAKTTYHELLKQVLTVLLKYGEKYEDAIIKLGDYF----ILSQN 271 Query: 299 PAALG 303 P Sbjct: 272 PDEYL 276 >UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696_ARATH Length = 525 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 52/314 (16%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALAN---GLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q L+ + RP+T DVVGQ+H+L+ + + R+ + +F G G GKTSIA+ L Sbjct: 100 HQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLP-SIVFWGPPGTGKTSIAKSL- 157 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +N + RFV L +A + V+D RD +++ + GR Sbjct: 158 --INSSKDPSLY--------------RFVSL----SAVTSGVKDVRDAVESAKRLNLEGR 197 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-PQKLPVT-ILSRCLQFHLK 176 + V +DEVH ++ + L +E+ + F+ ATT+ P +T +LSRC L Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIED--GSILFIGATTENPSFHLITPLLSRCRVLTLN 255 Query: 177 ALDVEQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTD------QA 224 L + L +++ + + ++ LA +G R AL+ + Sbjct: 256 PLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATT 315 Query: 225 IASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A D VS L G + +L ++M + + + Sbjct: 316 RAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEG 375 Query: 275 GIEWEALLVEMLGL 288 G E + ++ Sbjct: 376 GEEPLYIARRLIRF 389 >UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organisms RepID=Y508_THEMA Length = 599 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 119/300 (39%), Gaps = 41/300 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + L+ RP+ F D VGQ+H+ L L G + + L G G GKTS+ LL Sbjct: 4 SEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSIL-YGPPGSGKTSVFSLL 62 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 + N E ++ + + V + +++L + G Sbjct: 63 KRYFNGE------------------------VVYLSSTVH-GVSEIKNVLKRGEQLRKYG 97 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + + +DE+H L+++ L+ +E + + TT+ + +LSRC + K Sbjct: 98 KKLLLFLDEIHRLNKNQQMVLVSHVER--GDIVLVATTTENPSFVIVPALLSRCRILYFK 155 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQ 235 L E + L+ +I E + + R +EG R L+ + A + +V+ + Sbjct: 156 KLSDEDLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTLEIVHQAFKNKRVTLE 215 Query: 236 AVSAMLGTLD-------DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + +LG + D A + +++M ++ + + + G + + M+ Sbjct: 216 DLETLLGNVSGYTKESHYDFASAFIKSMRGSDPNAAVYYLVKMIEMGEDPRFIARRMIIF 275 >UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Methanosarcinaceae RepID=Q12UK9_METBU Length = 341 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 69/361 (19%), Positives = 135/361 (37%), Gaps = 41/361 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN---CE 65 K+RPQ D+VG + +L + + G + H +F G GK+S A LA L E Sbjct: 8 KYRPQKLEDIVGNGESVNSLVHLVGSGNLPH-LVFHGPVNSGKSSTAFALAYELYGEYYE 66 Query: 66 TGITA-TPCGVCDNCRE--IEQGRFVDLIEIDAASRT--KVEDT-RDLL-DNVQYAPARG 118 T D + + RFV +I D + V ++++ + Sbjct: 67 NNFTYFNASDFFDQGKRYLVRDKRFVHIIGTDDPKKIYSSVISIFKEVINEFAGMGSLDA 126 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +K+ ID V L + +AL + +E+ +F+L+TT P KL + SR L+ + Sbjct: 127 DYKIIFIDNVESLETGAQHALRRIMEKYTRTCRFILSTTQPSKLIAPLRSRGLELFFTYV 186 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LSLTDQAIASGDGQVSTQAV 237 + +R + + +E I+ L A G++ A L+L + ++ + + Sbjct: 187 PDDALRSFVISVAEKEAISISDDGYDALLYYAGGNVSKALLTLQFAVMNHPGKTITGEIL 246 Query: 238 -SAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMV 295 LG + + L A +E + + LI+ G + +L ++ H + + Sbjct: 247 YEEALGDVSKN-VTELHNAAIEHDVLKARKLIDTLLIEEGFTGDEVLQQL----HSVVV- 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 G + + +A + + + R+ +E + Sbjct: 301 -----ESGRVEGEVAKAICRIA----------------DTDAMVIDSANPRIHLEKLVTE 339 Query: 356 A 356 Sbjct: 340 L 340 >UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacillales RepID=C6D7W1_PAESJ Length = 436 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 55/308 (17%) Query: 6 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP+T D +GQEH++ L + ++ + L G G GKT++A +++K Sbjct: 17 LADRMRPETLDDYIGQEHIIGAGKLLRRAIEGDQVS-SILLYGPPGCGKTTLANIISKR- 74 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRFK 121 G FV L +DA V+D R+++D + G+ Sbjct: 75 --------------------TAGEFVKLNAVDA----SVKDVREVIDTAKTNKLMYGKKT 110 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + +DEVH + +ALL +E + F+ ATT+ + +LSR F L+ L+ Sbjct: 111 ILFLDEVHRFNTSRQDALLPAVE--QGIIIFIGATTENPFHHVNGALLSRSTLFQLEPLN 168 Query: 180 VEQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 + ++ L ++ + E ALQ +A A G +R AL+ + A + + Sbjct: 169 EKHALEAMKRALTDKDRGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVTTPSEP 228 Query: 232 -----VSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ + + + D + +++ ++ + + G++ Sbjct: 229 DGSVRITMEVAQESIRKPTVRADTSTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDP 288 Query: 279 EALLVEML 286 L ++ Sbjct: 289 MTFLRRLI 296 >UniRef50_C4KND2 DNA polymerase III subunit delta' n=58 Tax=Betaproteobacteria RepID=C4KND2_BURPS Length = 344 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 72/165 (43%), Gaps = 30/165 (18%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEI--- 93 HA L G G+GK + AR LAKG CET PCG C C EQG D + Sbjct: 21 PHALLLYGQAGIGKLAFARHLAKGFLCETPRENGEPCGACAACTWFEQGNHPDYRIVVPE 80 Query: 94 --------------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 + K+E R L+D A RG +V ++ Sbjct: 81 ALAAELPGAADEPKAADADEGGKKARTPSKEIKIEQVRALVDFCGIASHRGGARVVVLYP 140 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 L+ + NALLKTLEEPP V FLLA+ +L TI+SRC Q Sbjct: 141 AEALNVAAANALLKTLEEPPSGVVFLLASARVDRLLPTIVSRCRQ 185 >UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacteria RepID=A8ZU04_DESOH Length = 459 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 67/318 (21%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFS----GTRGVGKTSIAR 56 + LA + RP+ D+ GQ HV + L + L G LFS G G GKT++AR Sbjct: 17 RPLADRMRPEKLEDLAGQPHVTGPDSLLRSALEKGT-----LFSMILWGPPGCGKTTLAR 71 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 +LA G+T ++I A V++ R++++ + Sbjct: 72 ILA-------GMTGAA-----------------YVQISAVLS-GVKEIREVVEAARRR-- 104 Query: 117 RGRFK---VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCL 171 RG F+ + +DEVH ++ +A L +E V + ATT+ ++ ++SRC Sbjct: 105 RGEFQKDTILFVDEVHRFNKSQQDAFLPHVE--SGLVTLIGATTENPSFEVIPALMSRCR 162 Query: 172 QFHLKALDVEQIRHQL-------EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 224 L + E +R L E L + + EP AL LA A+G +R AL+ + A Sbjct: 163 LIVLNPVPEEAVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALADGDVRTALNNLEAA 222 Query: 225 IASGDG----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINE 270 ++ V L G + +L +++ ++ + + + Sbjct: 223 ALLRPAGTGVTITLAGVEQALDKKALLYDKSGEEHYNLISALHKSLRGSDPDAAVYWLER 282 Query: 271 AAARGIEWEALLVEMLGL 288 + G + +L M+ Sbjct: 283 MLSGGEDPFYILRRMVRF 300 >UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB Length = 437 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 118/308 (38%), Gaps = 59/308 (19%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA RP++ +VVGQ+ + L ++ ++ + + G GVGKTSIAR + + Sbjct: 14 QPLAAALRPRSLDEVVGQKTLTAKGSVLRRRIAANQLG-SIVLYGPPGVGKTSIARAVGE 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN +E +Q A+R V+D R L D + P Sbjct: 73 MLN----------------KEFKQLH---------ATRAGVKDIRQLADEARIRP----- 102 Query: 121 KVYL-IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + + +DEVH S + LL EE F+ ATT LP ++SR L+ Sbjct: 103 -ILIFVDEVHRFSATQADDLLSICEE--GTADFIGATTQNPYTALPKALVSRSTILKLEP 159 Query: 178 LDVEQIRHQLEHILN---EEHIAH--EPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + +E + L L E I P L+++A + G R AL+ + Sbjct: 160 IAIEDMEAVLARGLEHLAEMGIEVVLAPEQLRIIAGRSGGDARSALTTLESLAIGHGDSG 219 Query: 233 STQAVSAML--------------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 S + ML G D + +++M + E V+ + G + Sbjct: 220 SVKVTDDMLEEVYRAAPVNHDRSGDQHYDIISAFIKSMRGGDPEAVLYWLARLIHGGEDP 279 Query: 279 EALLVEML 286 + ++ Sbjct: 280 RFIARRIM 287 >UniRef50_C7RD89 DNA polymerase III gamma/tau subunits-like protein n=2 Tax=Anaerococcus RepID=C7RD89_ANAPD Length = 261 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 95/325 (29%), Gaps = 89/325 (27%) Query: 32 LSLGRIHHAYLFSGTRGVGK-----TSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 86 + + + +AY+F G K A A+ + G I+ Sbjct: 8 IDIKNLSNAYIFEG-----KNEEANKVFALDFAREVFSYYG--------------IDDKN 48 Query: 87 FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 DL ID +E R +L ++ P G+ K+Y+I L + NA+LK+LEE Sbjct: 49 NPDLYLIDKKGGVIDIETIRQVLKDIYLRPYNGKIKIYIIHNAQDLRQEGSNAMLKSLEE 108 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 ++VK + T+ L TI SRC I E L Sbjct: 109 LRDYVKIIFTCTNRYNLLATIRSRCQIIP---------------------IQAEEGDLD- 146 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 +D D+ S++ + + Sbjct: 147 --------------------------------------IDMDKLYSIMAHIYNGKIDSFY 168 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + + + + ML + + + L + + + + +I Sbjct: 169 KNKDFFNKYKDDRQTIYKAMLKVYQALISYNYNKDNLDYNTKYMLKKF----PQVSIDEI 224 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVE 350 + + + + + +E Sbjct: 225 EKAIFLIEDIQNAARTNINYDLSIE 249 >UniRef50_A1WGM6 DNA-directed DNA polymerase n=10 Tax=Comamonadaceae RepID=A1WGM6_VEREI Length = 351 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 56/278 (20%) Query: 31 GLSLGRI----HHAYLFSGTRGVGKTSIARLLAKGLNCETGI---------------TAT 71 R+ HA+L G G+G+ ++ L + C+ I Sbjct: 14 AAQRSRLLAQRGHAWLLHGPSGLGQYALGMELVRAWLCDAPIAPGDVPIAPGNAPAAQGA 73 Query: 72 PCGVCDNCREIEQGRFVDL---------------------IEID-----AASRTKVEDTR 105 CG C +C I+ DL EID + +VE R Sbjct: 74 ACGQCGSCHAIDVRTHADLCVLMPEVQMMALGWPLSEKAQAEIDDKKRKPSREIRVEAMR 133 Query: 106 DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 D L+ Q RGR K L+ +++ + NALLKTLEEPP ++F+LA+ L T Sbjct: 134 DALEFAQRTAGRGRGKAVLVYPAEQMNQITANALLKTLEEPPGQIRFVLASEAAHLLLPT 193 Query: 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD--- 222 I SRCL + Q++ L+ + +A E A L RAA G DAL+L Sbjct: 194 IRSRCLGHAMVWPAPVQMQAWLQ----AQGLAPEAAASFL--RAAGGRPDDALALAQSGR 247 Query: 223 --QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 QA AS ++ V+A+ +L + + Sbjct: 248 SPQAWASLPQAMARGEVAALGDWTPAQAITALQKLCHD 285 >UniRef50_B2JGP8 DNA polymerase III, delta prime subunit n=27 Tax=Burkholderiaceae RepID=B2JGP8_BURP8 Length = 349 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 73/186 (39%), Gaps = 34/186 (18%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEI--- 93 HA L G G+GK A+ LA+GL CE+ PCG C C QG D + Sbjct: 21 PHALLLHGQAGIGKLRFAQHLAQGLLCESALPNGEPCGTCAACNWFVQGNHPDYRIVVPE 80 Query: 94 ------------------------------DAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 + K+E R LLD RG +V Sbjct: 81 ALAAEAGFSSAAADEKAEKGDADDSGKKTRTPSKEIKIEQVRALLDFCGVGSHRGGVRVV 140 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++ L+ + NALLKTLEEPP V FL+ + +L TI+SRC Q+ + E Sbjct: 141 VLYPAEALNVAAANALLKTLEEPPAGVVFLMVSARIDRLLPTIISRCRQWPMTTPSPESA 200 Query: 184 RHQLEH 189 L Sbjct: 201 TAWLAQ 206 >UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria RepID=Q480Q0_COLP3 Length = 511 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 130/332 (39%), Gaps = 73/332 (21%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S+ LA K RP+T AD VGQ+H+L + LA + G H+ +F G G GKT++A ++ Sbjct: 55 SFMPLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGH-CHSLIFWGPPGSGKTTLAEII 113 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA---- 114 A+ N E IE +A + +++ R ++ + Sbjct: 114 AQHANAE-------------------------IERVSAVTSGIKEIRSAIEKAKLRAQGE 148 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQ 172 A R V +DEVH ++ +A L +E+ + F+ ATT+ +L +LSR Sbjct: 149 GANKRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENPAFELNQALLSRARL 206 Query: 173 FHLKALDVEQIRHQLEH---ILNEEH---IAHEPRALQLLARAAEGSLRDALSLT----- 221 + LK L + + L+ + E I A Q L ++G R L+L Sbjct: 207 YTLKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCLD 266 Query: 222 ---------------DQAIASGDGQVSTQAVSAMLGT------LDDDQALSLVEAMVE-- 258 +Q ++ V+ + ++ + G+ D L+ A + Sbjct: 267 SSVTTHENKQDDQHGEQGVSGDIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSV 326 Query: 259 --ANGERVMALINEAAARGIEWEALLVEMLGL 288 ++ + + G + + +L + Sbjct: 327 RGSSPDAALYWYARILTAGGDALYVARRLLAI 358 >UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta RepID=B2W7D9_PYRTR Length = 534 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 117/300 (39%), Gaps = 46/300 (15%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP + V GQE V L + GR+ + + G G GKT+IARL+A Sbjct: 118 PLAERMRPMSLEHVYGQELVGPKGILRAMVDEGRLP-SMVLWGRPGTGKTTIARLIANT- 175 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGRFK 121 G +EI++ S T++E R + + Q GR Sbjct: 176 ---------------------SGSR--FVEINSTS-TRLEQVRAIFTEASQDLRLTGRKT 211 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + DE+H S+ +A L +E + + ATT+ K+ +LSRC F L L Sbjct: 212 IVFCDELHRFSKTQQDAFLGPVE--SGTITLIAATTENPSFKIISALLSRCRTFTLDDLK 269 Query: 180 VEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ----- 231 + + LE + E + L AR ++G R AL+L + A++ + Sbjct: 270 EDDLVKILERAMTAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLANQPDMTKE 329 Query: 232 -----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 ++ V G D +L +++ ++ + + G + + ++ Sbjct: 330 KIQQSLTKTLVYDRAGDQHYDSISALHKSIRGSDPHASLYYLARMLESGEDPRYIARRLI 389 >UniRef50_B9KI78 DNA polymerase III subunit gamma n=6 Tax=Anaplasma RepID=B9KI78_ANAMF Length = 296 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 V+G L +L G RG+GK+ ++R AK + Sbjct: 8 DSVIGHAAQ----KRALLANSSAVTWLLCGRRGIGKSRLSRAFAKHVT------------ 51 Query: 76 CDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 +E D++ ID A+ V+ R++ + R + KV ++D + LS Sbjct: 52 ----GSVELESDPDVMLIDNATEPISVDKVREMRHFLHMTAIRSKRKVVIVDSIDDLSVS 107 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 NA+LKTLEEPP LL + + ++PV + SRC+ L L E+ Sbjct: 108 PTNAMLKTLEEPPAGSLILLISHNVHRVPVVVKSRCVILPLHELSHEE 155 >UniRef50_Q0C177 Putative DNA polymerase III, delta prime subunit n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C177_HYPNA Length = 311 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 86/214 (40%), Gaps = 21/214 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G E A + GR+HHA+L G GVGK +A +A L G A P Sbjct: 7 LFGHEAAEAAFLSAHRSGRLHHAWLIEGPSGVGKARVAERIAAYLLGARGPAAAPFDAPA 66 Query: 78 NC---REIEQGRFVDL----IEIDAASR----TKVEDTRDLLDNVQYAPARGRFKVYLID 126 + R I G D+ E++ + VE R + PA G ++V ++D Sbjct: 67 DDPVMRAILAGNHPDMNVQRRELNDKGKLTQDITVEQIRQVGHFFSMKPAMGGWRVGIVD 126 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + +R+S NALLKTLEEPP LL + + TI SRC L L E Sbjct: 127 AIDEANRNSANALLKTLEEPPAQSILLLVNHRSRPILPTIRSRCRVLQLSVLSAEDCERA 186 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSL 220 LE A + + A G + L Sbjct: 187 LEA----------AGAPREASALARGRPGLGMRL 210 >UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZZ0_DICTD Length = 431 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 125/318 (39%), Gaps = 61/318 (19%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 SY+ L+ + RP+T + +G E ++ + L ++ G + + + G G GKT+++ LL Sbjct: 13 SYEPLSFRMRPRTLEEFLGAEDIIGEKSFLRKAINKGYLP-SLIIYGPPGSGKTTLSVLL 71 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPAR 117 AK +N E IE++AA V++ ++ L + Sbjct: 72 AKAINAE------------------------FIELNAA-IVGVQELKEALQKAKRNLELY 106 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL--ATTD--PQKLPVTILSRCLQF 173 + V +DE+H ++ + LL +E +L ATT+ L T+LSRC Sbjct: 107 NKRTVLFLDEIHHFNKLQQDVLLPFVE----RGIMILIGATTENPFFSLNTTLLSRCRLV 162 Query: 174 HLKALDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 LK L E I ++ L E + A++ + R A G R AL+ + A Sbjct: 163 ELKPLSKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFANGDARIALNTLELASF 222 Query: 227 S------GDGQVSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINE 270 G ++ V ++G + ++++ ++ + + + + Sbjct: 223 MVAPSENGKLIITRNIVKEVIGKRIFRYDQRGDEHYHTISAFIKSIRGSDPDAALYYLAK 282 Query: 271 AAARGIEWEALLVEMLGL 288 G + + ++ Sbjct: 283 MLLSGEDPRFIARRLIIH 300 >UniRef50_Q254L7 DNA polymerase III gamma/tau n=4 Tax=Chlamydophila RepID=Q254L7_CHLFF Length = 290 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 117/337 (34%), Gaps = 70/337 (20%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L + ++ G+I HA L G + A LA + + A +I + Sbjct: 13 EVLLDSVNQGKIPHAILLHGNSLTMLSQYAYNLAANILVKEFPEAQ--------YKISKK 64 Query: 86 RFVDLIEIDAASRTKVEDT---RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+ E+ + ++ RD+ + P +K+Y+I EV ++ + +A LK Sbjct: 65 IHPDIHELVPEGKGRLHSIEVPRDIKRQIGVLPYEASYKIYIIHEVDRMTLPAISAFLKV 124 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LE+ P H +L +T Q++P TILSR +I EEH Sbjct: 125 LEDAPPHSVIILTSTKLQRIPATILSR----SFSL-----------YIQGEEHRDPNKED 169 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + L + A G + +++ +A + G D D+ + + + Sbjct: 170 VAYLLKYASGKM----------------KIT-EAGQIVKGGADADK-----QMLRDK--- 204 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + LL +L L M+ L+ +A + L +P Sbjct: 205 ---------------AKRLLEVLLMLFRDRFMLSLNMSASAMTYPQYAKDILNL-PALPL 248 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + + L + +E L+ + Sbjct: 249 EKVLIVIE---KAYRSLDNSSSATSCMEWVALQLASL 282 >UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID=Q99K91_MOUSE Length = 272 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 90 LIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 ++E++A++ ++ R+ + V +GR K+ ++DE ++ + AL +T+E Sbjct: 20 VLELNASNDRGIDVVRNKIKMFAQQKVTLP--KGRHKIIILDEADSMTDGAQQALRRTME 77 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 + +F LA K+ I SRC L Q+ +L +++ +E + + L+ Sbjct: 78 IYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLE 137 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 + A+G +R AL+ Q+ SG G ++++ V + +++ V+AN + Sbjct: 138 AIIFTAQGDMRQALNNL-QSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 196 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ G E ++ + + + P A + I+ Sbjct: 197 YKILAHLWHLGYSPEDVIG---NIFR---VCKTFPMAEYLKLEFIKE 237 >UniRef50_C2L0X2 Possible DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0X2_9FIRM Length = 310 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 66/255 (25%) Query: 81 EIEQGRFVDLIEID--------AASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHML 131 IE+ DLI +D S ++ R ++ V +P G++KVY++ + Sbjct: 78 RIEKEEHPDLIFVDYQEKENGEKKSSISIDQIRQEVKGTVDISPKEGQYKVYVLCHSDKM 137 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEE PEHV +L + KL T+LSR ++ ++ + +E+ L+ I Sbjct: 138 TVEAQNALLKTLEEAPEHVIMILLCENENKLLDTVLSRVVRVYVGDMPIEKQWKLLQEI- 196 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 AL+ L + Sbjct: 197 ---------PALRTL-------------------------------------------PA 204 Query: 252 LVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + E + E G E L + L + + + + Sbjct: 205 FLKEIAHKKQEEMQKYAEELGQLDGQELYCFLDII---LRDVLCYKSTKDHHLLYGQSAR 261 Query: 311 LRMRELARTIPPTDI 325 + +A + Sbjct: 262 ESITAMAEKYSYWTL 276 >UniRef50_B6W8Q3 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W8Q3_9FIRM Length = 275 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 27/178 (15%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSI-----ARLLAKGLNCETGITATPCGVCDNCR 80 L N + R+ AY+F K S A +K + G+ Sbjct: 2 ELLENQIENKRLSSAYIFE-----SKNSTYNLDRALEFSKKVFESYGLDTR--------- 47 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 D I + ++ R L++++ P+ G+ K+Y+IDE LS N Sbjct: 48 ---LSENPDFEIIKKDEKEKNISIKTVRLLINDMYLRPSNGKIKIYVIDESERLSLEGSN 104 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ--LEHILNE 193 ALLK++E+ +++ + T + L TI SRC K+ + + L +IL+E Sbjct: 105 ALLKSIEDAKDYILIIFTTNNSFSLLKTIRSRCQIISFKSEKENEFVDREELSYILSE 162 >UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZU9_9BACL Length = 452 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 120/308 (38%), Gaps = 55/308 (17%) Query: 6 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP + + +GQEH++ L + ++ + L G G GKT++A + Sbjct: 32 LADRMRPTSLDEYIGQEHIVGPGKLLRRAIEADQVS-SILLYGPPGCGKTTLAHI----- 85 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRFK 121 I + + ++A V+D R++++ Q G Sbjct: 86 -------------------ISHHTKAEFVRLNAV-DASVKDVREVIEKAQNDKAFYGTKT 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + +DEVH + +ALL +E+ + F+ ATT+ + ++SR F L+ L Sbjct: 126 ILFLDEVHRFNSSRQDALLPAVEK--GTIIFIGATTENPFHYVNGALMSRSTLFQLEPLT 183 Query: 180 VEQ-IRHQLEHILNEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 E + + ++E + + AL +A A G +R AL+ + A + Sbjct: 184 KEHSLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMANGDIRRALNALELAAMTTPPQP 243 Query: 231 --------QVSTQAVSAMLGTLDDDQALSLVEA----MVEANGERVMALINEAAARGIEW 278 +V+ +++ L D+ ++ A + ++ V + G++ Sbjct: 244 DGTVHITLEVAEESIRRPLVKADESTQYDVLSAFHKSIRGSSDAAVFWFLYAVEKLGMDP 303 Query: 279 EALLVEML 286 + ++ Sbjct: 304 MTFIRRLI 311 >UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepID=A3DD23_CLOTH Length = 432 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 127/323 (39%), Gaps = 64/323 (19%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T + GQE ++ L + RI + + G G GKTS+AR++A Sbjct: 6 EPLAYRMRPRTLEEFYGQEEIVGEGKLLNRMIKADRIS-SIILYGPPGTGKTSLARIIAN 64 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +++A + V D + ++ + Q + Sbjct: 65 S------------------------TKANFEKLNAVTA-GVADIKRIVSDTQNPILNPKG 99 Query: 121 K-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + V IDE+H ++ +ALL +E+ + + ATT+ ++ ++SR F LK Sbjct: 100 RTVLFIDEIHRFNKSQQDALLPYVED--GTIILVGATTENPFFEVNKALISRSSVFMLKP 157 Query: 178 LDVEQIRHQLEHIL-NEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAI----- 225 L + I+ + + L ++E I E AL LA +G R AL+ + A+ Sbjct: 158 LGSDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICDGDARIALNALELAVLTSPV 217 Query: 226 -ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 + G + Q + + G D + +++M ++ + + + A Sbjct: 218 GSDGKFHIDIQLIEECIQKKAARYDKSGEEHYDNISAFIKSMRGSDPDAAVFYLARALYA 277 Query: 275 GIEWEALLVEMLGLLHRIAMVQL 297 G + L RI + Sbjct: 278 GEDPMFLA-------RRIMICAA 293 >UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchnera aphidicola RepID=HOLB_BUCAP Length = 328 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 2/167 (1%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 + HHA L +G+G + ++K L C C C C+ + D Sbjct: 19 ERKKAHHAILIKTQKGMGVFKLVWFISKWLLCLKPKGTNFCDNCHGCKLMSANNHPDWHT 78 Query: 93 IDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 I V+ R + + + +G K+ + VH L+ + NALLK LEEPPE Sbjct: 79 IINEKNDVFDVDSIRVINEKIFKRAQQGNNKIIFLPNVHKLTESAVNALLKILEEPPEKN 138 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 F L + KL T+ SRC + L ++ + L++ +++I+ Sbjct: 139 WFFLIDYNYLKLHSTLKSRCFLYRLPLPLEKESLNWLKNNNKKDNIS 185 >UniRef50_UPI00016998CE DNA polymerase III, delta prime subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016998CE Length = 144 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNC 79 Q + + L GR+ HA LFSG +GVGK A+L AK L C+ ++ PCG C C Sbjct: 8 QNTIWSRLQQMRDSGRLPHALLFSGPQGVGKELFAQLFAKSLLCQEPDSSGLPCGHCQPC 67 Query: 80 REIEQGRFVDLIEI--DAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 + G D I D S++ V+ R L + G ++ L+ +S Sbjct: 68 HLLASGVHPDFTNIAPDVESKSGEILVDTIRGLAFSTTLTSTAGSHRIVLLRPAERMSNS 127 Query: 135 SFNALLKTLEEPPE 148 + NA PP Sbjct: 128 AANAF------PPR 135 >UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacteria RepID=C5RHF7_CLOCL Length = 424 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 122/321 (38%), Gaps = 68/321 (21%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RPQ +VVGQ H++ L + I + +F G G GKT++A ++AK Sbjct: 2 KPLADRLRPQVIEEVVGQSHLIGQNKILTKIIESQHIPN-MIFYGPPGCGKTTVANIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGR 119 N + + A+ +D ++++ + + A+G Sbjct: 61 ATN----------------KRFFKLN---------ATNASTKDIKEIILELDTFMGAKG- 94 Query: 120 FKVYL-IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 V L +DE+ ++ +LL+ +E + + +TT+ + ILSR F K Sbjct: 95 --VLLYLDEIQNFNKKQQQSLLEFIEN--GSITLIASTTENPYFYVYNAILSRSNVFEFK 150 Query: 177 ALDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 + + I L + I E AL+ ++ A G +R AL+ + A+ S Sbjct: 151 MVSSDDIEKALMRAVEVLQNDFKSSKILLEDEALKYISAIAGGDVRKALNALELAVFSSK 210 Query: 230 G-----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 ++ A G D + +++ ++ + + + Sbjct: 211 AKDNIIKIDINAAYDATQRKIMNFDKDGDGHYDVLSAFQKSIRGSDADAAVHYLARLIRG 270 Query: 275 GIEWEALLVEMLGLLHRIAMV 295 G ++L + R+ ++ Sbjct: 271 G--------DLLSICRRLMVI 283 >UniRef50_Q3EP45 DNA polymerase III, delta' subunit n=4 Tax=Bacillus cereus group RepID=Q3EP45_BACTI Length = 202 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 34/225 (15%) Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N LLK LEEP +L T ++ TILSRC + L E + +L+ EE I Sbjct: 4 NTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ----EEGI 59 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 +L LA S +AL+L + + + L EA+ Sbjct: 60 T---ASLSTLAAQLTNSFDEALALCSDEWFAQARAL----------------VIKLCEAL 100 Query: 257 VEANGERVMALINEAAARGIEWEAL---LVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 E + + + + E E L L +L + + VQL Sbjct: 101 -EKDKTSIFFVQEKWGKHFGEKEQLQQGLDMLLLIYKDLLYVQLGEEDRLVFHEQ----- 154 Query: 314 RELARTIPPTD--IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +E+ + I +L + + + ++ E +LR Sbjct: 155 KEMFESFSYAQKRIVSALFNILEAKNRINANVNAQLVFEQLVLRL 199 >UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGG4_ACHLI Length = 412 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 132/339 (38%), Gaps = 64/339 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+ F +V GQ+H+L+ L + + + ++ G G GKT+IA+L + Sbjct: 2 EPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKYLS--FILYGPPGTGKTTIAKLFS 59 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +D +A++ K +D+LD Y Sbjct: 60 ------------------------DKSMLDTYFFNASTDNKA-KLKDILDMTAY------ 88 Query: 120 FKVYLI-DEVHMLSRHSFNALLKTLEEPPEHVKFL-LATTDP-QKLPVTILSRCLQFHLK 176 V +I DE+H + + LL LE + L T +P Q + + I SRC + +K Sbjct: 89 HDVLIIVDEIHRMKTDIQDYLLPFLE--SGKAIMIGLTTLNPYQSINMAIRSRCHLYEIK 146 Query: 177 ALDVEQI-RHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QV 232 AL + I L I +H I AL + RA+ +R AL+L + A D ++ Sbjct: 147 ALSDKDIEAAILNAIQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKI 206 Query: 233 STQAVSAMLGTL------DDDQALSLVEAMVE----ANGERVMALINEAAARGIEWEALL 282 ++ + + G ++ ++ A+ + ++ + + + G Sbjct: 207 TSNIIRKLAGKPQLSLDDHENHYFEMLSALQKSIRGSDVDASIHYLARLLTLG------- 259 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 ++ + R+ ++ L N ++ A + Sbjct: 260 -DLEIIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMT 297 >UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms RepID=B6HVW8_PENCW Length = 539 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 49/303 (16%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP+T +V GQE V L + R+ + + G+ G GKT+IAR++A + Sbjct: 123 PLAERMRPKTLEEVCGQELVGPNGILRGLIEQDRVP-SMILWGSAGTGKTTIARVIASLV 181 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRFK 121 G +EI++ S V + + + + GR Sbjct: 182 ----------------------GSR--FVEINSTSS-GVAECKKIFAEARSELGLTGRKT 216 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + DE+H S+ + L +E V + ATT+ K+ +LSRC F L L Sbjct: 217 IIFCDEIHRFSKSQQDVFLGPVE--SGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLT 274 Query: 180 VEQIRHQLEHILNEEHIAH------EPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-- 231 E I L L E ++ + +Q LAR A+G R +L+L + A+ Sbjct: 275 DEDIISILHRALQVEGPSYSPSELVDEELIQYLARFADGDARTSLNLLELAMDLSKRAGM 334 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 ++ V G D + +++ ++ + + + G + + Sbjct: 335 DKEDLKRSLTKTLVYDRAGDQHYDTISAFHKSIRGSDPDAALYYLARMIQSGEDPLYISR 394 Query: 284 EML 286 ++ Sbjct: 395 RLI 397 >UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria RepID=B5Y9V9_COPPD Length = 459 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 126/313 (40%), Gaps = 56/313 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA + RP+T ++VGQ+ T L + ++ + + G GVGKTSIA ++A Sbjct: 18 IPLAERMRPRTLDEIVGQDKAFGKGTLLRKLIEEDKLT-SLVLWGPPGVGKTSIAMVIAN 76 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + RF+ +A + +++ +++L++ + GR Sbjct: 77 T---------------------TKARFLRF----SAVTSGIKEIKEVLEDAEVQFNMGRR 111 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V +DE+H ++ +A L +E+ V + ATT+ ++ +LSR L+ L Sbjct: 112 TVIFVDEIHHFNKTQQDAFLPYVEK--GAVVLICATTENPSFEIISPLLSRSKVVVLEPL 169 Query: 179 DVEQIRHQL-------EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-- 229 + E I+ L E L E + L +A ++G R AL+ + A+ D Sbjct: 170 EAEDIKTILYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIALNTLEMAVFGTDPN 229 Query: 230 ----GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 +S + +S L G + +L ++M ++ + + + G Sbjct: 230 SEGIRVISDEVISEALQKKTLLYDKAGEEHYNLISALHKSMRNSDPDAALYWLARMLEAG 289 Query: 276 IEWEALLVEMLGL 288 + + ++ Sbjct: 290 EDPLYVARRIVRF 302 >UniRef50_C7ND46 ATPase and helicase subunits involved in DNA replication n=3 Tax=Leptotrichia RepID=C7ND46_LEPBD Length = 317 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 124/336 (36%), Gaps = 39/336 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE + N ++ +I +YLF G + V S A + +K + + R Sbjct: 4 QE-ITEKFKNEINQDKISASYLFYGDKRVDLLSYALMFSKMVM-TKDVQNDAERE-KIER 60 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I+ + D+ I+ + K+++ R+++ + + K++++ + L + S NAL Sbjct: 61 LIDNLQHPDIEIINKNNENIKIDEVREIIYSSIESSFNSPKKIFILCGIENLRKESSNAL 120 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEPP++V F+L + + TI SR ++FHL ++ +++ Sbjct: 121 LKILEEPPQNVYFILLSRTLN-IISTIKSRTIKFHLSGMNNDEL-------------GVS 166 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 +G+ D L Q ++ D Q V +L + + + E +++ Sbjct: 167 KEVYYFF----DGNENDILEFKRQNLSLEDIQFKINTVEDILQIIFEMKNYMTGEFIIKN 222 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLH--RIAMVQLSPAALGNDMAAIELRMRELA 317 N + + + + I V + N++ + + Sbjct: 223 NLDLTIKYNKSI-----------ELLARRIRFWDIENVYFFINEIENELKKEKEFLISFL 271 Query: 318 RT--IPPTDIQLY--YQTLLIGRKELPYAPDRRMGV 349 I + L+ + + + + + Sbjct: 272 SKIIINVKHSVEADELKKLINLKNSIRSNVNVKSVI 307 >UniRef50_C6BRT3 DNA polymerase III, delta prime subunit, putative n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BRT3_DESAD Length = 288 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 11/145 (7%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 + L G + +AR A LNCE G PCG C +C++I F D + I Sbjct: 23 AQKPPQCLLIEGGSAEERMDMARYWACVLNCENGQD--PCGSCQSCQQIADNAFNDFLLI 80 Query: 94 DAASR---------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D V+ R+LL P G +V ++ E L+ +S NALLKTLE Sbjct: 81 DREENESGTGLKQDISVDSIRELLPVWGQPPNGGGTRVTVVREAQHLNGNSANALLKTLE 140 Query: 145 EPPEHVKFLLATTDPQKLPVTILSR 169 EP F+L ++L T++SR Sbjct: 141 EPRPGNVFVLTAPQRERLLETLVSR 165 >UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Proteobacteria RepID=C6C7V1_DICDC Length = 447 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 56/314 (17%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q LA + RP T A +GQ+H+L L + G++ H+ + G G GKT++A L+ Sbjct: 13 FQPLAARMRPTTLAQYIGQQHLLGPGKPLPRAIEAGQL-HSMILWGPPGTGKTTLAELI- 70 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G D+ I A + ++D R+ ++ + GR Sbjct: 71 -------GRYGEA----------------DVERISAVTS-GIKDIREAVERARQNRNAGR 106 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DEVH ++ +A L +E+ V F+ ATT+ +L +LSR + LK+ Sbjct: 107 RTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTENPSFELNSALLSRARVYLLKS 164 Query: 178 LDVEQIRHQLEHI-------LNEEHIAHEPRALQLLARAAEGSLRDALSLTD------QA 224 LD I L L +HI +LLA G R AL+L + + Sbjct: 165 LDTADIEQVLAQAMVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEV 224 Query: 225 IASGDGQVSTQAVSAMLGTLDD------DQALSLVEAMVE----ANGERVMALINEAAAR 274 A G ++ + A+ G D+ L+ A+ + + + + Sbjct: 225 DADGQRVLTPALLKAVSGERSARFDNKGDRYYDLISAVHKSVRGSAPDAALYWYARIITA 284 Query: 275 GIEWEALLVEMLGL 288 G + + +L + Sbjct: 285 GGDPLYVARRLLAI 298 >UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R5J4_AJECN Length = 366 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 126/311 (40%), Gaps = 38/311 (12%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K+RP T D V + N L + R+ H L G G GKTS LA+ + Sbjct: 76 KYRPNTLEDAVPNAPNIDW-TNPLFVQRLPH-LLLYGPPGTGKTSTILALARRI------ 127 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED--TRDLLDNVQYA-PARGRFKVYLI 125 GV N R++ ++E++A+ ++ ++ + G FK+ ++ Sbjct: 128 ----YGV-KNMRQM-------VLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIIL 175 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE ++ + AL + +E+ + +F + KL +LSRC +F L E IR Sbjct: 176 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRV 235 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 ++ ++ +E + +P A+ L + ++G +R AL++ AS Sbjct: 236 LVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASTP--------------HP 281 Query: 246 DDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D + + ++ + I + +G+ +L + L RI + + Sbjct: 282 SDIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRIVWME 341 Query: 305 DMAAIELRMRE 315 +A IE R+ Sbjct: 342 GLADIEWRLAA 352 >UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria RepID=B0CAJ0_ACAM1 Length = 742 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 125/320 (39%), Gaps = 71/320 (22%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK- 60 LA + RP+T + VGQ+ ++ L + ++ + +F G G GKT++A+++A Sbjct: 17 PLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLS-SLIFYGPPGTGKTTLAQIIANT 75 Query: 61 ------GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-Y 113 LN A ++D R +D Q Sbjct: 76 TQAHFLALN--------------------------------AVLAGIKDIRSSVDEAQDR 103 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCL 171 G+ + +DEVH ++ +ALL +E V + ATT+ ++ ++SR Sbjct: 104 RGQYGQRTILFVDEVHRFNKAQQDALLPWVEN--GTVILIGATTENPYFEVNKALVSRSR 161 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL-------LARAAEGSLR---DALSLT 221 F L++L + +R LE L +++ + A++L L A G R +AL L Sbjct: 162 IFQLRSLMPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELA 221 Query: 222 -------DQA-----IASGDGQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMALI 268 DQ +A + + +AV G D + +++M ++ + + + Sbjct: 222 IETTEPDDQGVIPITLAVAEASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWL 281 Query: 269 NEAAARGIEWEALLVEMLGL 288 G + + M+ L Sbjct: 282 ARMVYAGEDPRFIFRRMIIL 301 >UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Methanosaeta thermophila PT RepID=RFCL_METTP Length = 467 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 38/290 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTALAN---GLSLGRI-HHAYLFSGTRGVGKTSIARLLAK 60 A K+RP+ ++G ++ L GR + G GVGKTS A LA Sbjct: 3 SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALAS 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-NVQYAPARGR 119 + D IE++A+ + E + + Q + GR Sbjct: 63 EM------------------------DWDYIELNASDQRTAEIIKSIAGPASQVSTFSGR 98 Query: 120 FKVYLIDEVHMLS----RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 ++ ++DE L R A+L+ ++ + V +L + + + C Sbjct: 99 RRLVILDEADNLHGTYDRGGAAAILRVIKNATQPV--ILIANEYYNIEKPLRDACRGVQF 156 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 +++ + I L I E I EP A+ +A + G LR A++ + A A G + + Sbjct: 157 RSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLE-AAARGLKHLRLE 215 Query: 236 AVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVE 284 V+ + +++++ + + + + + + E Sbjct: 216 DVATSERDV-KASIFRVLDSIFKGEDSRSALEATYQLDESPEDLIHWIDE 264 >UniRef50_Q6E6C3 Replication factor C activator 1 37kDa subunit (Fragment) n=1 Tax=Antonospora locustae RepID=Q6E6C3_ANTLO Length = 210 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 79/202 (39%), Gaps = 11/202 (5%) Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +FK+ ++DE ++ + A+ + +E + +F+L K+ I SRC L Sbjct: 2 QFKIVILDEADSMTTAAQQAMRRVMEIYADTTRFILICNTFTKIFEPIQSRCAVLKFDRL 61 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +IR++LE I E I + AL ++ + +G +R L++ + ++ + + Sbjct: 62 SDGEIRNELERICVIEGIGVKSEALDMVVKLCDGDMRQCLNIIESVSGL--EKIDSHVIE 119 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH------RI 292 + G +V + E + + L +E A E ++ Sbjct: 120 QVTGQPSPAFVEKIVCFLQEKRVDAALDLFDEMWAAKYEPVDIVS---AFFRSAKYRDDY 176 Query: 293 AMVQLSPAALGNDMAAIELRMR 314 +++ A E +++ Sbjct: 177 HLMKCVGMAQLRLAEGYETKLQ 198 >UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1KXC3_CLOBM Length = 416 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 73/373 (19%), Positives = 143/373 (38%), Gaps = 68/373 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ D VGQ+H+L L N + I ++ +F G G GKT++A ++A Sbjct: 2 RPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNS-IFYGPPGTGKTTLANIMA- 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 N D+ EI ++ LL Y+ Sbjct: 60 --NYVDKKFYR--------LNATTASIKDIQEITSS-------INSLL---NYSGV---- 95 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-----PQKLPVTILSRCLQFHL 175 V IDE+ ++ ALL+ +E+ V + +TT+ K ILSRC F Sbjct: 96 -VLYIDELQHFTKKQQQALLEFIED--GRVILIASTTENPYFVIHK---AILSRCNIFQF 149 Query: 176 KALDVEQIRHQLEHILNE-----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 K L+ E I LE +N+ +I + +L+ + +G R A ++ + A+ S G Sbjct: 150 KPLNREDIILGLEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCG 209 Query: 231 ---QVSTQAVSAM---------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +++ + ++ G + + +++ ++ + + + G Sbjct: 210 FNIEITLDYIESLAQSNIRADATGDEYYNILSAFQKSIRGSDADAAVHYLARLIKSG--- 266 Query: 279 EALLVEMLGLLHRI--AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 ++ + R+ + + A N + + + ELA + + Q+ + I Sbjct: 267 -----DITSITRRLSVMVAEDIGLAYPNALTIVNSGI-ELALKVGFPEAQIILSEITIYL 320 Query: 337 KELPYAPDRRMGV 349 LP + + + Sbjct: 321 ATLPKSNSAYIAI 333 >UniRef50_P0AAZ6 Replication-associated recombination protein A n=338 Tax=cellular organisms RepID=RARA_ECO57 Length = 447 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 122/310 (39%), Gaps = 56/310 (18%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RP+ A +GQ+H+L L + G + H+ + G G GKT++A ++ Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVI 70 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A+ N D+ I A + V++ R+ ++ + G Sbjct: 71 ARYAN------------------------ADVERISAVTS-GVKEIREAIERARQNRNAG 105 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 R + +DEVH ++ +A L +E+ + F+ ATT+ +L +LSR + LK Sbjct: 106 RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLK 163 Query: 177 ALDVEQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTD------Q 223 +L E I L + + + I + +A G R AL+ + + Sbjct: 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAE 223 Query: 224 AIASGDGQVSTQAVSAMLGTLDD------DQALSLVEAMVE----ANGERVMALINEAAA 273 SG + + ++ + G D+ L+ A+ + + + + Sbjct: 224 VDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIIT 283 Query: 274 RGIEWEALLV 283 G + + Sbjct: 284 AGGDPLYVAR 293 >UniRef50_A6GP69 DNA-directed DNA polymerase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP69_9BURK Length = 318 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 23/161 (14%) Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIE-------------------IDAASRTKVE 102 L CET PC C C G DL + + +++ Sbjct: 46 LLCETPAGKKPCLQCPGCHMRLAGNHPDLRYLMPQAVGLELGFNVEVKTGVKPSQDIRID 105 Query: 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 D RDL + A +RG + ++ ++ ++ NALLKTLEEP ++F+L + KL Sbjct: 106 DVRDLQNYFNTASSRGASRYVVVYPFDNMNANTANALLKTLEEPANGLRFVLVGSRVDKL 165 Query: 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 TI SRC + + + I L L + + AL Sbjct: 166 LPTIRSRCQELT---MPMPAIAECLAW-LEAQGVQQPDVAL 202 >UniRef50_C0R3P0 DNA polymerase III, delta' subunit, putative n=6 Tax=Wolbachia RepID=C0R3P0_WOLWR Length = 273 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 21/185 (11%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 V+G + N LS ++L G +G+GK ++A+ + L + Sbjct: 2 KKVIGHNQAKKKIMNNLS----VQSWLICGKKGIGKATLAKSFSNWLLIKN--------- 48 Query: 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +DL ++ + +E R++ + + +P + K+ +ID + ++ ++ Sbjct: 49 -------YNEVALDLHIVEGDT-IGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNA 100 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NA+LK LEEPP++ K + + P + TIL RC Q +L L ++ + + ++ Sbjct: 101 KNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDN 160 Query: 196 IAHEP 200 + Sbjct: 161 QTFDE 165 >UniRef50_Q4E7S4 DNA polymerase III delta prime chain (Fragment) n=1 Tax=Wolbachia endosymbiont of Drosophila simulans RepID=Q4E7S4_9RICK Length = 198 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 21/185 (11%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 V+G + N LS ++L G +G+GK ++A+ + L + Sbjct: 2 KKVIGHNQAKKKIMNNLS----VQSWLICGKKGIGKATLAKSFSNWLLIKN--------- 48 Query: 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +DL ++ + +E R++ + + +P + K+ +ID + ++ ++ Sbjct: 49 -------YNEVALDLHIVEGDT-IGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNA 100 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NA+LK LEEPP++ K + + P + TIL RC Q +L L ++ + + ++ Sbjct: 101 KNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDN 160 Query: 196 IAHEP 200 + Sbjct: 161 QTFDE 165 >UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bacteria RepID=B8DU13_BIFA0 Length = 504 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 97/510 (19%), Positives = 179/510 (35%), Gaps = 81/510 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVL------TALANGLSLGRI---HHAYLFSGTRGVGKTSI 54 + LA + RP T +VVGQ HVL LA+ S G + LF G GVGKT++ Sbjct: 17 RPLAVRMRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILF-GPPGVGKTTL 75 Query: 55 ARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA 114 A ++AK + GR E+ A + V+D R++L Sbjct: 76 AHIVAK----------------------QSGRQ--YEELSAVTS-GVKDLREVLRRAHER 110 Query: 115 -PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCL 171 ++G+ V IDEVH S+ +ALL ++E V F+ ATT+ + +LSR + Sbjct: 111 LVSQGKETVLFIDEVHRFSKSQQDALLPSVEN--RDVTFIAATTENPSFSVIKPLLSRSV 168 Query: 172 QFHLKALDVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 L++L+ E++R +E ++ + + A+ + R A G R +L++ + A Sbjct: 169 VVKLESLEPEELRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAAAG 228 Query: 227 SGDG-------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALIN 269 + D +++T VS ++ G D + +++M ++ + + + Sbjct: 229 AVDESGSNVPAEITTDVVSTVMDVAAVRYDRNGDDHYDVISAFIKSMRGSDVDATLHYLA 288 Query: 270 EAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 G + + RI + + +G I A+ + + Sbjct: 289 RMIRAGEDPRFIA-------RRIMI--AAAEEVGMAAPQILQITVAAAQAVQMIGMPEAR 339 Query: 330 QTLLIGRKELPYAP---------DRRMG-VEMTLLRALAFHPRMPLPEPEVPRQSFAPVA 379 L + AP ++ + V+ L+ + H R + Sbjct: 340 IILSEAAIAVATAPKSNASYTAINQALADVDAGLIGQVPLHIRNAPTTLMKSWGNHEGYH 399 Query: 380 PTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRA 439 V Q P + +L R++ + + PA Sbjct: 400 YAHDYPNAVVEQQYMPDVLVGREYYHPNSRGYEREIGPRLDRIRAIIHGEPAPPAPTQTE 459 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKA 469 R Q + + A Sbjct: 460 RKPTEPVDPAHTEHPGETQRSQMKGKNDDA 489 >UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAW3_9ARCH Length = 345 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 65/373 (17%), Positives = 128/373 (34%), Gaps = 53/373 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP+ +++G V+ L + I + L G +G GKTS+ LA Sbjct: 3 QMWTEKYRPKRLHEILGHVEVVKRLNGFVMEKTIPN-LLLWGPKGTGKTSLVYALANEFY 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV--EDTRD--------LLDNVQY 113 + CR+ + R + A R K ++ + + + Sbjct: 62 GDDENLLR-----IECRDFIEQRK---KWLKADKRFKFFYDEQKSAINIFKAMIKEYASL 113 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 +P FK+ L + L + +E+ + +F+ +TT + I SRCL F Sbjct: 114 SPLNAPFKLLFFSNADYLPVYLQQGLRRVMEQSSKTCRFIFSTTKATSVIPAIRSRCLNF 173 Query: 174 HLKALDVEQIRHQL-EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 +L L I + E + L+ L+ A+G A++L + A A+ + Sbjct: 174 RFPSLAESDAFGTLIRLISDAEGLKITEGGLKALSGYAKGDAGVAINLLE-AAATNSDTI 232 Query: 233 STQ--AVSAMLGTLDDDQALSLVEAMVE---ANGERVMALINEAAARGIEWEALLVEMLG 287 V A A L+++ + + + I+ + +LVE+ Sbjct: 233 DEDGLEVVAENAFFQRRTAEELIDSAFASRHKDVRAGLEFL--IRGERIDGKEILVEIHE 290 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP--YAPDR 345 L A + + L G +L Y+ + Sbjct: 291 ALRSKMR----------------------AERKKSSKLFARL-VLYEGEADLKLCYSLNT 327 Query: 346 RMGVEMTLLRALA 358 + +E +++ + Sbjct: 328 IIPLEEMMMKMSS 340 >UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopobium RepID=C8W9U5_ATOPD Length = 443 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 66/353 (18%), Positives = 121/353 (34%), Gaps = 70/353 (19%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP T VGQE + + L + + L G G GKT++AR++A Sbjct: 18 PLAARMRPTTLDGYVGQEDAVGPGSWLRKAIEHDTLSSV-LLYGPAGTGKTTLARIIAHT 76 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + +E+ A + T + R++ GR Sbjct: 77 ------------------------THAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRT 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + IDE+H +R +ALL +E+ V + ATT+ ++ ++SR L AL Sbjct: 113 ILFIDEIHRFTRSQQDALLHAVED--RIVVLIGATTENPYFEVNSALISRSRVVELHALS 170 Query: 180 VEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEG-------SLRDALSLTDQAIAS 227 I ++ L E E A + + A G SL A + D ++ Sbjct: 171 DNAIDELIQRALESEDGLAGAFVLEEDARKEIVTLAGGDGRAALTSLELASQMVDVPESA 230 Query: 228 GDGQ-----VSTQAVSAM----------LGTLDDDQALSLVEAMVEANGERVMALINEAA 272 ++ Q V G + D + +++M ++ + + + Sbjct: 231 DGKASEPLVITKQNVLEANPRRGLPYDKAGDMHYDIISAFIKSMRGSDPDAALYWLARMI 290 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 G + + + RI ++ A+ A + + A I Sbjct: 291 DAGEDPKFIA-------RRIMIL----ASEDIGNADPQALLIAHAAFRSAEVI 332 >UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID=B2THM3_CLOBB Length = 428 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 150/382 (39%), Gaps = 82/382 (21%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA RP D VGQ H+L T L N + +I + +F G G GKT++A + Sbjct: 1 MS--PLADLMRPSKIEDFVGQRHILGENTPLYNLIKSKKICNC-IFYGPPGTGKTTLANI 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV----QY 113 +AK ++ ++ + A+ V+D +++ + + Y Sbjct: 58 MAKYVD----------------KKFYKLN---------ATTASVKDIQNITNELDNLLNY 92 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-----PQKLPVTILS 168 A V IDE+ ++ +LL+ +E+ + + +TT+ K I+S Sbjct: 93 AGV-----VLYIDELQHFNKKQQQSLLEFIED--GRITLIASTTENPYFVIHK---AIIS 142 Query: 169 RCLQFHLKALDVEQIRHQLEHILNE---EHIA--HEPRALQLLARAAEGSLRDALSLTD- 222 RC F + L + I LE L++ E I + AL+ +A ++G R A ++ + Sbjct: 143 RCNIFAFEPLIISDIIVGLEKSLDKLINEGIEVTYSNEALKYIAEISQGDYRKAYNILEL 202 Query: 223 --QAIASGDGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINE 270 + + ++S + LG + + +L +++ ++ + + + Sbjct: 203 SINSQMTLHKEISVDYI-EKLGQSNMRADNSGDEFYNLLSALQKSIRGSDSDAAIHYLAR 261 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTDIQL 327 G + ++ RI+++ +G + +LA + + ++ Sbjct: 262 LIKGG--------NIAAIIRRISVI--VAEDIGLAHPNALTVVNSGLDLAMKVGFPEARI 311 Query: 328 YYQTLLIGRKELPYAPDRRMGV 349 L+I LP + + + Sbjct: 312 VLAELVIYLATLPKSNSAYLAI 333 >UniRef50_C1XWF5 Putative uncharacterized protein n=2 Tax=Meiothermus RepID=C1XWF5_9DEIN Length = 296 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 57/242 (23%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E +L L L ++LF+G GVG+ ++AR A LN E Sbjct: 3 ILGHERILELLL-SLK----AQSFLFTGPEGVGRRAVARWYAWQLNGEHYPD-------- 49 Query: 78 NCREIEQGRFVDLIEIDAASRTK-----------VEDT--RD-----LLDNVQYAPARGR 119 D +EI + TK +E R+ LLD + P R R Sbjct: 50 -----------DYLEIAPETETKGGKKARKPQILLEQIAPREAGGENLLDWLSTHP-RHR 97 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KV +ID H+L+ + NALLK LEEPP + + +L T + + T+ SR L+ L Sbjct: 98 AKVAVIDGAHLLNEPAGNALLKILEEPPAYARIILITPSRELVLPTLASRSLEIAFGPLP 157 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + +R ++ +P L AEG++ + + T+ V Sbjct: 158 LSILRQ----------LSTDPEVLA----YAEGAVGRVRWALEHPLEFQKLLARTEGVLE 203 Query: 240 ML 241 L Sbjct: 204 SL 205 >UniRef50_B2UPH2 DNA polymerase III delta' subunit n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPH2_AKKM8 Length = 322 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 119/337 (35%), Gaps = 42/337 (12%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN--CREIEQG 85 L S R+ HA L G G +RL+ + L GI A + CR + Sbjct: 12 LRTAFSRNRLPHALLIVGDEHQG---ASRLILQLLELINGIRADHLDSVRDEYCRLVRPK 68 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + R +D R + +Q A G++K+ + + ++ + NA LKTLEE Sbjct: 69 S--------KSRRILRDDIRAVEPFLQQRAAEGKWKIAVFMDAERMNDEAANAFLKTLEE 120 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQ--------FHLKALDVEQIRHQLEHILNEEHIA 197 PP +L+T+ P +L TI+SRC++ F L + + H LE ++ Sbjct: 121 PPGQCLLILSTSQPDQLLQTIISRCVRVNLLQSGEFRLTPIQEALLPHWLE---TCRNLN 177 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ AL +R D ++ AI Q D Sbjct: 178 NDLAALAFRSRF-----MDVMAEAKAAITKNLNQALKDEAREAAQGTDASD-----WEAR 227 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + R L ++ + A++ + +R LA Sbjct: 228 NKDANAAQIETEYLEQR----NQALELLISWFGQAALIASGAPEVAPIHPE----VRTLA 279 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P ++ + L R +L + + +++ LL Sbjct: 280 AQMPVNELLKRMEALNRLRDDLNFNIHEALALDVHLL 316 >UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase n=8 Tax=Lactobacillus RepID=C2HPK6_LACAC Length = 478 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 130/353 (36%), Gaps = 57/353 (16%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 M++ Q LA RP+T ++VGQ H+L L + I + L G G GKT++A Sbjct: 50 MTFKQPLADLMRPKTLGEMVGQNHLLAKGKPLYQIIKE-HILLSLLLWGPPGCGKTTLAY 108 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 ++++ L R E +++ L +Q P Sbjct: 109 VMSQTL-----------------------RLP--FE---KFNASIQNKSQLQKLIQKHPD 140 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFH 174 V L+DE+H L++ + LL LE HV + TT+ + I SRC F Sbjct: 141 ES--FVLLLDEIHRLTKPIQDYLLPYLEN--GHVLLVGTTTENPIMSIQPAIRSRCQIFE 196 Query: 175 LKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + E I L EEH+ + + +A + G +R +L++ D A + Sbjct: 197 FYPIKAEDIELVLIK-AAEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNI 255 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S + T D + +++ ++ + + + G + E+++ Sbjct: 256 SMANIEEFARNQHFAFDKDATKHYDYLSAFQDSIEGSDADAALYYLAVILKSG-DLESVV 314 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 L +A + + A I L L +P L T+L+ Sbjct: 315 R----RLKDLAALDVGLADSARVAQVITLANTALEIGLPRASTHLAMATILLA 363 >UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9I1_NOSCE Length = 352 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 106/252 (42%), Gaps = 28/252 (11%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 K++P+ F + +++ L I H +F G G GK IA L K L G Sbjct: 6 KYKPRDFNSMTDHTEIISILQKYNIHN-IPH-LIFHGKSGSGKKLIAYNLIKHLF---GQ 60 Query: 69 TATPCGVCDNCREIEQGRFV---------DLIEIDAASRTKVED--TRDLLDN-VQYAPA 116 + P V + E++ G + + IEI + + + ++ Q P Sbjct: 61 ISVP-NVRTS--EVKAGSRMIEVNFLEANEFIEISPSDYNFQDKVIIQSIIKEMAQSRPV 117 Query: 117 RGRF--------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 F K +I H LS + AL +T+E E + +L + K+ I S Sbjct: 118 MSFFSTKKTPSIKFVIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIEPIRS 177 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC+ ++ ++I++ +++I+ E+I + ++ + + ++G++R AL L + Sbjct: 178 RCVFVRIRGFKPQEIKNHIKNIVTAENININEQNIEQIIKISDGNMRRALGLLEILYLKH 237 Query: 229 DGQVSTQAVSAM 240 +V+ + + Sbjct: 238 SEEVNKRLKLDL 249 >UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3744E Length = 423 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 136/323 (42%), Gaps = 64/323 (19%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA K RP+T ADVVGQEH+L L + G + + +F G GVGKT++AR+ Sbjct: 1 MS-APLADKIRPKTLADVVGQEHILADGKPLRRIIDSGTVPN-MIFYGPSGVGKTTVARI 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +A CG + L +++ + + D +D++ ++ + Sbjct: 59 IA-----------ENCG-------------MSLYKLNG-TNASISDIKDVVADIGTFGSE 93 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 +YL DE+ L++ +LL+ +E + + +TT+ + ++SR F Sbjct: 94 NGILLYL-DEIQYLNKKQQQSLLEYIEN--GDITLIASTTENPYFSVYNAVISRSTVFEF 150 Query: 176 KALDVEQIRHQLE---HILNEEH---IAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 K + EQ+ + I++EE+ + ++ +A + G +R A++ + A+ G+ Sbjct: 151 KPVSAEQLMPAIRRAFRIMSEENGYAVEASDDIIKQIAYSCGGDVRKAMNTAELAVVCGE 210 Query: 230 G-----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 V+ ++ + G D +L +++ ++ + Sbjct: 211 ASDGKVAVTADSLKILAQRSNMRYDRDGDQHYDILSALQKSIRGSDENAALHYAARLIEA 270 Query: 275 GIEWEALLVEMLGLLHRIAMVQL 297 G +++ L R+ ++ Sbjct: 271 G--------DIISLSRRLLVIAA 285 >UniRef50_C2HFQ5 DNA polymerase III delta subunit n=2 Tax=Finegoldia magna RepID=C2HFQ5_PEPMA Length = 272 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 42/246 (17%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSI----ARLLAKGLNCETGITATPCGVCDNCRE 81 L N ++ +I + YL G G + A L L + Sbjct: 6 KTLINQVNNNKISNQYLLYG----GNLNEINYDAEALIYNLLVSNSNLK---------LK 52 Query: 82 IEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 ++ + DL+ I+ ++ RD+ V P KV LI + ++ + NALL Sbjct: 53 FDRDKLSDLLVIEPEKNSITIDKIRDIAKFVSTKPFESNNKVVLIKQADLMRTEASNALL 112 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEP V F+L T + KL TI+SRC + ++ E+ + Sbjct: 113 KNLEEPKPFVYFILLTDNKNKLLKTIISRCQVIN--------------YLSERENEKFDY 158 Query: 201 R-ALQLLARAAEGSLRD-ALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 AL +L + S+ L++ D + Q T + L + S ++ + Sbjct: 159 TIALDIL----DKSMGQNLLTMLDSKEYLSNFQKETDVLFDFL----MEFYSSFLKFVKT 210 Query: 259 ANGERV 264 +G + Sbjct: 211 KDGSSL 216 >UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria RepID=Q3B4X4_PELLD Length = 457 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 126/314 (40%), Gaps = 58/314 (18%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RPQ+ ++ GQEH++ L L G++ + +F G G GKT++A + Sbjct: 23 AFQPLAERVRPQSIDEMAGQEHLVGPMGPLRRFLGGGQLP-SMIFWGPPGSGKTTLAEIC 81 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAPAR 117 A L D E +A + V+D R +L+N + AR Sbjct: 82 ASAL--------------------------DFRFEQLSAIESGVKDVRRVLENAASSRAR 115 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 G + IDE+H ++ + LL +E V + ATT+ ++ +LSR + L Sbjct: 116 GIRTLLFIDEIHRFNKSQQDTLLHAIE--QGVVVLIGATTENPSFEINAALLSRMQVYTL 173 Query: 176 KALDVEQIRHQLEHILN------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 K+L E IR + L+ + H+ E ++ L R + G R AL+ + A Sbjct: 174 KSLGPEDIRLVVTRALSVDPLFRDRHVQVED--MEFLLRFSGGDARKALNALEAAFLLIA 231 Query: 230 GQVSTQAV-SAML--------------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 + +L G + + +++M ++ + + + Sbjct: 232 EDEDPALIGRDLLERALQHRAPIYDHGGEAHYNTVSAFIKSMRGSDPDAALFWLARMIEG 291 Query: 275 GIEWEALLVEMLGL 288 G + + ++ Sbjct: 292 GEDPRFIARRLVIF 305 >UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5_PELCD Length = 726 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 127/319 (39%), Gaps = 61/319 (19%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 S + LA + RP+T + VGQ+H+L L + ++ + +F G G GKT++A++ Sbjct: 10 FSSEPLASRMRPRTLEEYVGQDHILGEGRLLRRAIRADQLS-SLIFYGPPGTGKTTLAQV 68 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-A 116 +A + ++A V+D R+ +++ + + Sbjct: 69 IANS------------------------TASRFVSMNAVLS-GVKDLREAIEDARQSQEY 103 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFH 174 + + +DEVH ++ +ALL +E+ + + ATT+ ++ ++SR F Sbjct: 104 YDKRTILFVDEVHRWNKSQQDALLPWVEK--GTIILIGATTENPYFEVNKALVSRSRVFQ 161 Query: 175 LKALDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEG---SLRDALSLTDQA 224 L L E +R + L ++ + EP AL L R A G SL +AL L + Sbjct: 162 LLGLTEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVASGDARSLLNALQLAVET 221 Query: 225 I-------ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMAL 267 A+ ++ A + G D + ++++ ++ + + Sbjct: 222 TPESFPPPANSRIHITLSAAEESIQQKAVLYDKEGDYHFDTISAFIKSLRGSDPDAALYW 281 Query: 268 INEAAARGIEWEALLVEML 286 + G + + ML Sbjct: 282 MARMVRAGEDPRYIFRRML 300 >UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosaccharomyces pombe RepID=WRIP1_SCHPO Length = 504 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 52/309 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP++ + VGQE ++ + N + R + + + G+ G GKT++ARL+A Sbjct: 84 RPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCN-SMILWGSAGTGKTTLARLIA- 141 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGR 119 + IEI A S T V D R + ++ Q Y GR Sbjct: 142 ---------------------VTTKSR--FIEISATSTT-VADCRKIFEDSQNYLTLTGR 177 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DEVH +R + L +E+ V + ATT+ +L ++SRC F LK Sbjct: 178 KTIIFLDEVHRFNRAQQDIFLPMVEK--GLVTLIGATTENPSFRLNSALISRCPVFVLKK 235 Query: 178 LDVEQIRHQLEHIL--NEEHI-----AHEPRALQLLARAAEGSLRDALSLTDQAI-ASGD 229 L + ++ L H E + E + ++ +G R AL+ + +I Sbjct: 236 LTRDNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDARMALNALEMSIGMLRQ 295 Query: 230 GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 G +S + + L G + D + +++ ++ + + + G + Sbjct: 296 GPLSLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGEDPL 355 Query: 280 ALLVEMLGL 288 + M+ + Sbjct: 356 YVARRMVRI 364 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enter... 514 e-144 UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 T... 481 e-134 UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymera... 469 e-130 UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymera... 450 e-125 UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase... 448 e-124 UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Ta... 445 e-123 UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxaloba... 441 e-122 UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pa... 440 e-121 UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 T... 437 e-121 UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 T... 437 e-121 UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 T... 435 e-120 UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fi... 435 e-120 UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, puta... 433 e-119 UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=ce... 432 e-119 UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 T... 432 e-119 UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax... 431 e-119 UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, puta... 425 e-117 UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 T... 422 e-116 UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Ta... 417 e-114 UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseria... 416 e-114 UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 416 e-114 UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Ta... 414 e-114 UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 T... 411 e-113 UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionac... 411 e-113 UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Ta... 409 e-112 UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicr... 406 e-111 UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase... 406 e-111 UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Ba... 405 e-111 UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Ta... 405 e-111 UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bactero... 404 e-111 UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 T... 403 e-110 UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 401 e-110 UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Ta... 400 e-110 UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Ba... 398 e-109 UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 T... 395 e-108 UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 T... 395 e-108 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 392 e-107 UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 T... 390 e-106 UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Sl... 389 e-106 UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 T... 387 e-106 UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Ha... 387 e-106 UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA ... 387 e-106 UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 T... 386 e-105 UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 T... 386 e-105 UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 T... 383 e-104 UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propion... 383 e-104 UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 T... 382 e-104 UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 ... 381 e-104 UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Ta... 381 e-104 UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 380 e-104 UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Ta... 380 e-104 UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Ta... 380 e-104 UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 T... 380 e-103 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 378 e-103 UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 T... 377 e-103 UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 ... 377 e-103 UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Co... 376 e-102 UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetell... 374 e-102 UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2... 374 e-102 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 373 e-101 UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 T... 371 e-101 UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 T... 371 e-101 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 371 e-101 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 371 e-101 UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Ta... 371 e-101 UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 T... 370 e-101 UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Ta... 370 e-100 UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pas... 369 e-100 UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Ta... 369 e-100 UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 T... 369 e-100 UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 T... 369 e-100 UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibriona... 369 e-100 UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 ... 368 e-100 UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 T... 368 e-100 UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candida... 368 e-100 UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 T... 368 e-100 UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 368 e-100 UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderi... 368 e-100 UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 T... 367 e-100 UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=D... 367 e-100 UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 T... 367 e-100 UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunit... 367 e-100 UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 T... 367 e-100 UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, puta... 367 e-100 UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 T... 367 1e-99 UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 T... 366 1e-99 UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Co... 366 2e-99 UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=roo... 365 2e-99 UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax... 365 2e-99 UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 T... 365 2e-99 UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=ce... 365 3e-99 UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, puta... 365 3e-99 UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clo... 365 3e-99 UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 T... 364 5e-99 UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Ta... 364 6e-99 UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 T... 363 8e-99 UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 T... 363 9e-99 UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 T... 363 9e-99 UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA ... 363 1e-98 UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 ... 363 2e-98 UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau... 363 2e-98 UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Ta... 362 2e-98 UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteob... 362 3e-98 UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 361 4e-98 UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 T... 361 4e-98 UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 361 5e-98 UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 T... 361 5e-98 UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 361 6e-98 UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Ba... 360 7e-98 UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W... 360 8e-98 UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Ta... 360 8e-98 UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Be... 360 1e-97 UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Ba... 360 1e-97 UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 T... 359 2e-97 UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 T... 359 2e-97 UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 T... 359 2e-97 UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymera... 359 2e-97 UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 T... 359 2e-97 UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Strept... 358 3e-97 UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79... 358 4e-97 UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 T... 358 5e-97 UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella a... 358 5e-97 UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma ... 357 1e-96 UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 T... 357 1e-96 UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subuni... 357 1e-96 UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 ... 356 1e-96 UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 356 2e-96 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 356 2e-96 UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lys... 356 2e-96 UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Ta... 356 2e-96 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 355 2e-96 UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 T... 355 2e-96 UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 T... 355 3e-96 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 355 3e-96 UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 T... 355 3e-96 UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n... 355 3e-96 UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase... 355 4e-96 UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 T... 355 5e-96 UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 T... 353 8e-96 UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymera... 353 9e-96 UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 T... 353 1e-95 UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 T... 353 1e-95 UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Ba... 353 1e-95 UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Ta... 353 1e-95 UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobac... 353 2e-95 UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 T... 352 2e-95 UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 352 2e-95 UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 T... 352 2e-95 UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, puta... 352 3e-95 UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 T... 352 3e-95 UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Ta... 352 3e-95 UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 T... 352 3e-95 UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotro... 352 4e-95 UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 T... 351 4e-95 UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bac... 351 4e-95 UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 T... 351 5e-95 UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteri... 351 6e-95 UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 T... 350 7e-95 UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Ta... 350 8e-95 UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 T... 350 9e-95 UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and ta... 350 9e-95 UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase... 350 9e-95 UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 T... 350 9e-95 UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 T... 350 9e-95 UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 T... 350 1e-94 UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax... 349 2e-94 UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=P... 349 2e-94 UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match)... 348 4e-94 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 348 4e-94 UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Ta... 348 4e-94 UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 T... 348 4e-94 UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 ... 347 6e-94 UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Pl... 347 6e-94 UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 T... 347 8e-94 UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Ta... 347 8e-94 UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacill... 347 9e-94 UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 T... 347 9e-94 UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 346 1e-93 UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Mic... 346 1e-93 UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus Rep... 346 1e-93 UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 T... 346 1e-93 UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragm... 346 2e-93 UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 T... 346 2e-93 UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Ta... 345 3e-93 UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter s... 345 3e-93 UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau ... 345 3e-93 UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Ta... 345 3e-93 UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunit... 345 4e-93 UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 T... 345 4e-93 UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostri... 345 4e-93 UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiob... 345 5e-93 UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 T... 344 6e-93 UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau... 344 7e-93 UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=The... 343 9e-93 UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydroba... 343 1e-92 UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 T... 343 1e-92 UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 ... 343 1e-92 UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdema... 343 1e-92 UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Ato... 343 1e-92 UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsi... 343 1e-92 UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 T... 343 2e-92 UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 T... 343 2e-92 UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Ta... 342 2e-92 UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau sub... 342 2e-92 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 342 3e-92 UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptospora... 341 4e-92 UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mob... 341 4e-92 UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, puta... 341 5e-92 UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 T... 341 5e-92 UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collins... 341 5e-92 UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Cox... 341 6e-92 UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 T... 340 9e-92 UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 T... 340 1e-91 UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 T... 339 2e-91 UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Ta... 339 2e-91 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 339 2e-91 UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 T... 339 2e-91 UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 T... 339 2e-91 UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacte... 339 3e-91 UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacter... 338 3e-91 UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfo... 338 3e-91 UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1... 338 4e-91 UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 T... 338 4e-91 UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax... 338 4e-91 UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Ta... 338 4e-91 UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 338 4e-91 UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 T... 338 4e-91 UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Me... 338 5e-91 UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 T... 338 5e-91 UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits... 337 6e-91 UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 337 8e-91 UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits ... 337 8e-91 UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcu... 337 1e-90 UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 T... 336 1e-90 UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 T... 336 1e-90 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 336 1e-90 UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymera... 336 2e-90 UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 T... 336 2e-90 UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 ... 335 2e-90 UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bac... 335 3e-90 UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 T... 335 3e-90 UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymera... 335 5e-90 UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 ... 334 7e-90 UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 T... 334 8e-90 UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonel... 334 8e-90 UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 334 8e-90 UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Ba... 333 9e-90 UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax... 333 1e-89 UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 T... 333 1e-89 UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY 333 1e-89 UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 T... 333 1e-89 UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Ta... 332 2e-89 UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ru... 332 2e-89 UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 T... 332 2e-89 UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 T... 332 3e-89 UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 ... 332 3e-89 UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Ana... 332 3e-89 UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 T... 331 4e-89 UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococca... 331 4e-89 UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 T... 331 4e-89 UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alp... 331 5e-89 UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacte... 331 6e-89 UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Ta... 331 7e-89 UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 T... 330 8e-89 UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Ta... 330 9e-89 UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Ta... 330 1e-88 UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 T... 330 1e-88 UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium... 330 1e-88 UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 T... 330 1e-88 UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 T... 330 1e-88 UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 T... 330 1e-88 UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=R... 329 2e-88 UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 T... 329 2e-88 UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Ta... 328 4e-88 UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=un... 328 5e-88 UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 328 6e-88 UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 T... 327 7e-88 UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Ta... 327 7e-88 UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Ta... 327 1e-87 UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobac... 327 1e-87 UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 T... 326 1e-87 UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 T... 326 1e-87 UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=St... 326 2e-87 UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimo... 326 2e-87 UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 T... 325 2e-87 UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 325 3e-87 UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 T... 325 3e-87 UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=L... 325 3e-87 UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bactero... 325 3e-87 UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 T... 325 4e-87 UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 T... 325 5e-87 UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners D... 324 7e-87 UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=P... 324 7e-87 UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 T... 324 8e-87 UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerof... 323 9e-87 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 323 1e-86 UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 T... 323 1e-86 UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=c... 323 2e-86 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 323 2e-86 UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Br... 322 3e-86 UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 T... 322 3e-86 UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 T... 322 3e-86 UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinob... 322 3e-86 UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenel... 321 4e-86 UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Lep... 321 6e-86 UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinom... 321 7e-86 UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella... 321 7e-86 UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 T... 319 2e-85 UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 T... 319 3e-85 UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 ... 319 3e-85 UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 T... 318 4e-85 UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=be... 318 4e-85 UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bif... 318 5e-85 UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 T... 318 5e-85 UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campyloba... 318 5e-85 UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonp... 318 6e-85 UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 ... 317 6e-85 UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 T... 317 7e-85 UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax... 317 7e-85 UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Ca... 317 7e-85 UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bif... 317 8e-85 UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax... 317 9e-85 UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Ac... 316 1e-84 UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 T... 316 1e-84 UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Entero... 316 1e-84 UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 T... 316 1e-84 UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 T... 316 2e-84 UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 T... 316 2e-84 UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax... 316 2e-84 UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidob... 315 2e-84 UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 T... 315 3e-84 UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=L... 315 4e-84 UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasm... 315 4e-84 UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 ... 314 6e-84 UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanoba... 314 7e-84 UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptosp... 314 8e-84 UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=P... 314 8e-84 UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Ta... 313 1e-83 UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and t... 313 1e-83 UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 T... 313 1e-83 UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau sub... 313 1e-83 UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 T... 313 1e-83 UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 ... 313 2e-83 UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium Rep... 312 2e-83 UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 T... 312 2e-83 UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Ta... 312 2e-83 UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia ... 312 3e-83 UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 T... 312 3e-83 UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax... 312 3e-83 UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=S... 311 4e-83 UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 T... 311 4e-83 UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Ta... 311 6e-83 UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 T... 311 7e-83 UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax... 310 1e-82 UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=The... 310 1e-82 UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Ca... 310 1e-82 UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 310 2e-82 UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax... 309 2e-82 UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Ta... 309 3e-82 UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=W... 309 3e-82 UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau... 308 3e-82 UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Ta... 308 5e-82 UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=... 308 5e-82 UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n... 308 6e-82 UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 T... 307 1e-81 UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=My... 306 1e-81 UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 T... 306 2e-81 UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 T... 305 4e-81 UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Ta... 305 5e-81 UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=... 305 5e-81 UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Ch... 304 9e-81 UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax... 303 1e-80 UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaul... 303 1e-80 UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 T... 303 2e-80 UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylob... 303 2e-80 UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and ta... 302 2e-80 UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=My... 302 3e-80 UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 T... 301 4e-80 UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Le... 301 5e-80 UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 T... 301 5e-80 UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 T... 301 6e-80 UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gem... 300 9e-80 UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Le... 298 4e-79 UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 T... 298 4e-79 UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 T... 298 5e-79 UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 T... 298 6e-79 UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax... 297 7e-79 UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax... 297 8e-79 UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=... 297 8e-79 UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 ... 297 8e-79 UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 T... 296 1e-78 UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinom... 296 1e-78 UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X ph... 296 2e-78 UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Ta... 295 3e-78 UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Ta... 295 3e-78 UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 295 3e-78 UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Ta... 295 4e-78 UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 294 5e-78 UniRef50_B3TCV4 Putative ATPase family associated with various c... 294 6e-78 UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clo... 294 8e-78 UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 294 8e-78 UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa ... 294 8e-78 UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanoth... 293 1e-77 UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 T... 293 1e-77 UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4... 293 1e-77 UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicob... 293 2e-77 UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Ta... 293 2e-77 UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicob... 291 4e-77 UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicob... 291 5e-77 UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 T... 290 1e-76 UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 T... 290 1e-76 UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 T... 289 2e-76 UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 T... 289 2e-76 UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alp... 288 3e-76 UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau... 286 2e-75 UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buc... 284 5e-75 UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 T... 284 7e-75 UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 T... 284 9e-75 UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fu... 284 1e-74 UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=... 283 2e-74 UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, s... 283 2e-74 UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oe... 279 3e-73 UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 278 4e-73 UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=My... 278 4e-73 UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 278 6e-73 UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 T... 276 3e-72 UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR 275 3e-72 UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana R... 273 2e-71 UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR 268 5e-70 UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 T... 267 1e-69 UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and ... 267 1e-69 UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I... 261 8e-68 UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 260 1e-67 UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 259 3e-67 UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Ta... 258 7e-67 UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidop... 256 2e-66 UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=... 256 2e-66 UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomo... 253 2e-65 UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabido... 252 4e-65 UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, s... 252 4e-65 UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostri... 252 4e-65 UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=... 251 5e-65 UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 T... 250 1e-64 UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 T... 250 1e-64 UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, s... 248 7e-64 UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau su... 248 7e-64 UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae... 246 2e-63 UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MV... 244 1e-62 UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostri... 243 2e-62 UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1... 237 1e-60 UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF... 235 4e-60 UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultu... 234 9e-60 UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 234 9e-60 UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=... 234 1e-59 UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=... 233 1e-59 UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=... 233 2e-59 UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostri... 232 3e-59 UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n... 231 5e-59 UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=P... 230 1e-58 UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=... 228 6e-58 UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coproco... 227 7e-58 UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax... 227 1e-57 UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 T... 223 2e-56 UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small... 223 2e-56 UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=... 222 4e-56 UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttle... 218 5e-55 UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 217 7e-55 UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=... 216 2e-54 UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntro... 216 3e-54 UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 T... 215 5e-54 UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=... 214 6e-54 UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 213 1e-53 UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Rosebur... 212 2e-53 UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=... 212 4e-53 UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacte... 211 7e-53 UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=... 209 2e-52 UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=... 206 2e-51 UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacte... 206 2e-51 UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n... 205 6e-51 UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Eury... 204 8e-51 UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbio... 204 1e-50 UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bac... 203 2e-50 UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=... 203 2e-50 UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=... 202 3e-50 UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Ta... 202 4e-50 UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=... 201 6e-50 UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=... 201 6e-50 UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Th... 200 1e-49 UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 T... 200 1e-49 UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archa... 200 1e-49 UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1... 200 2e-49 UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=... 200 2e-49 UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 199 3e-49 UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryo... 198 6e-49 UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya ... 197 7e-49 UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidam... 197 7e-49 UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 T... 197 1e-48 UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=... 197 1e-48 UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=... 197 1e-48 UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative... 196 2e-48 UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n... 196 2e-48 UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacte... 196 2e-48 UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostri... 194 8e-48 UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 ... 194 1e-47 UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas v... 193 1e-47 UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanob... 193 2e-47 UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=... 193 2e-47 UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotro... 193 2e-47 UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Fle... 192 4e-47 UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=E... 192 5e-47 UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=... 191 5e-47 UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cysto... 191 7e-47 UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas v... 191 8e-47 UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5... 191 8e-47 UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibac... 191 9e-47 UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=B... 190 1e-46 UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya ... 190 1e-46 UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactoba... 190 1e-46 UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharo... 190 1e-46 UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit... 190 1e-46 UniRef50_B3T4L9 Putative ATPase family associated with various c... 190 2e-46 UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax... 190 2e-46 UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax... 189 2e-46 UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales... 189 4e-46 UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Coryneb... 189 4e-46 UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Euk... 188 7e-46 UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium ... 188 7e-46 UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Therm... 187 8e-46 UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=... 187 1e-45 UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=... 187 1e-45 UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostr... 187 1e-45 UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazo... 186 3e-45 UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 T... 185 3e-45 UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=... 185 3e-45 UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=... 185 5e-45 UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=E... 185 6e-45 UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Ta... 185 6e-45 UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=... 184 9e-45 UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Ta... 184 1e-44 UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Ta... 183 2e-44 UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=... 183 2e-44 UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenoph... 183 2e-44 UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=... 183 2e-44 UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putativ... 183 2e-44 UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=... 182 3e-44 UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia ... 182 3e-44 UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryo... 182 4e-44 UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncult... 182 5e-44 UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clos... 182 5e-44 UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevib... 181 6e-44 UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genom... 181 7e-44 UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) ... 181 7e-44 UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacill... 181 8e-44 UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistip... 180 1e-43 UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Plancto... 180 1e-43 UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bact... 180 1e-43 UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa ... 180 2e-43 UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n... 180 2e-43 UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=... 180 2e-43 UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnob... 180 2e-43 UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH 180 2e-43 UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 179 2e-43 UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporo... 179 4e-43 UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacill... 179 4e-43 UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces ... 178 6e-43 UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5... 178 6e-43 UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit ... 178 6e-43 UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lacto... 178 6e-43 UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpet... 178 7e-43 UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=E... 177 8e-43 UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=... 177 8e-43 UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root... 177 1e-42 UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q... 177 1e-42 UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable... 177 1e-42 UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacte... 177 1e-42 UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytoz... 177 1e-42 UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactob... 177 2e-42 UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=... 177 2e-42 UniRef50_Q5UP47 Putative replication factor C small subunit L499... 176 3e-42 UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1... 175 3e-42 UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=... 175 3e-42 UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=P... 175 3e-42 UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylo... 175 4e-42 UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax... 175 5e-42 UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Coryneb... 175 5e-42 UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=... 175 5e-42 UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n... 175 5e-42 UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-... 175 5e-42 UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 174 7e-42 UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium El... 174 9e-42 UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarch... 174 1e-41 UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=H... 173 1e-41 UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=... 173 2e-41 UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=... 173 2e-41 UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=... 173 2e-41 UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitro... 173 2e-41 UniRef50_C8V679 Subunit of heteropentameric Replication factor (... 173 2e-41 UniRef50_B3T464 Putative ATPase family associated with various c... 172 3e-41 UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured ... 172 3e-41 UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n... 172 3e-41 UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepI... 172 3e-41 UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepI... 172 4e-41 UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3... 172 5e-41 UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bac... 172 5e-41 UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine ... 171 6e-41 UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsu... 171 7e-41 UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacte... 171 7e-41 UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacil... 171 8e-41 UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 T... 170 1e-40 UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candida... 170 1e-40 UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Ta... 170 2e-40 UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 T... 170 2e-40 UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactob... 169 2e-40 UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis R... 169 3e-40 UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=... 169 3e-40 UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , ... 169 4e-40 UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2... 169 4e-40 UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium Re... 168 5e-40 UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cyt... 168 7e-40 UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB 167 9e-40 UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 ... 167 9e-40 UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Ente... 167 1e-39 UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, ... 167 1e-39 UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiace... 167 1e-39 UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacter... 167 2e-39 UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=... 167 2e-39 UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Br... 167 2e-39 UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4... 167 2e-39 UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprino... 167 2e-39 UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=... 166 2e-39 UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxaloba... 166 2e-39 UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostri... 166 2e-39 UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=... 166 2e-39 UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA 166 2e-39 UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=... 165 3e-39 UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole geno... 165 4e-39 UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepI... 165 6e-39 UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostr... 165 6e-39 UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collins... 164 7e-39 UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime sub... 164 8e-39 UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sph... 164 8e-39 UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostr... 164 8e-39 UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivi... 164 1e-38 UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=... 164 1e-38 UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit... 164 1e-38 UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collins... 164 1e-38 UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermane... 164 1e-38 UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronob... 164 1e-38 UniRef50_C9KPY4 Replication-associated recombination protein A n... 163 2e-38 UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication fac... 163 2e-38 UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Pl... 163 2e-38 UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=... 163 2e-38 UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Cory... 163 3e-38 UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aerom... 162 3e-38 UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=... 162 3e-38 UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma ... 162 3e-38 UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Ky... 162 3e-38 UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissel... 162 4e-38 UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, hol... 162 4e-38 UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rh... 161 6e-38 UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusob... 161 6e-38 UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=... 161 7e-38 UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Coryn... 161 7e-38 UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=... 161 8e-38 UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=... 161 9e-38 UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA2... 161 1e-37 UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bactero... 161 1e-37 UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=... 160 1e-37 UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachl... 160 1e-37 UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia ... 160 2e-37 UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Ta... 160 2e-37 UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ... 160 2e-37 UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=G... 160 2e-37 UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subu... 159 3e-37 UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukar... 159 3e-37 UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Ta... 159 4e-37 UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bact... 159 4e-37 UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=... 159 4e-37 UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=... 159 4e-37 UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micro... 159 5e-37 UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n... 158 5e-37 UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 158 5e-37 UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseud... 158 6e-37 UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 ... 158 7e-37 UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=... 158 7e-37 UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonprote... 158 8e-37 UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=... 157 8e-37 UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytoz... 157 9e-37 UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Metha... 157 1e-36 UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=P... 157 2e-36 UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actin... 157 2e-36 UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Barto... 156 2e-36 UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like prote... 156 2e-36 UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta R... 156 3e-36 UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria Rep... 155 3e-36 UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organi... 155 3e-36 UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Bl... 155 4e-36 UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM 155 4e-36 UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like prote... 155 4e-36 UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Ta... 155 5e-36 UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillo... 155 6e-36 UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacter... 155 6e-36 UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=T... 155 7e-36 UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavob... 154 1e-35 UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevot... 154 1e-35 UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like prote... 154 1e-35 UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms R... 154 1e-35 UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax... 154 1e-35 UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax... 154 1e-35 UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime sub... 154 1e-35 UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri Rep... 154 2e-35 UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-lik... 153 2e-35 UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Ta... 153 2e-35 UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=... 153 2e-35 UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Maripro... 153 2e-35 UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoaltero... 153 3e-35 UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protei... 153 3e-35 UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=... 153 3e-35 UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisse... 152 3e-35 UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorang... 152 3e-35 UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=... 152 3e-35 UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBU... 152 3e-35 UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacte... 152 4e-35 UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepI... 152 4e-35 UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=... 152 4e-35 UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH... 152 4e-35 UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bactero... 152 4e-35 UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepI... 152 5e-35 UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=... 152 6e-35 UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Coryneb... 151 6e-35 UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Ricket... 151 8e-35 UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria Rep... 151 8e-35 UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit... 151 9e-35 UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696... 151 1e-34 UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella the... 151 1e-34 UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdello... 150 1e-34 UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalob... 150 1e-34 UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuni... 150 1e-34 UniRef50_Q5UQ72 Putative replication factor C small subunit L510... 150 1e-34 UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacill... 150 1e-34 UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycet... 150 1e-34 UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxie... 150 1e-34 UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n... 150 1e-34 UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=... 150 1e-34 UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=... 150 2e-34 UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 150 2e-34 UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharo... 150 2e-34 UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=... 150 2e-34 UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 150 2e-34 UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Coryn... 150 2e-34 UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Ta... 149 2e-34 UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=... 149 3e-34 UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria... 149 3e-34 UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliiv... 149 3e-34 UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=... 149 4e-34 UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggreg... 149 4e-34 UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 ... 149 4e-34 UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteur... 149 4e-34 UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepI... 149 4e-34 UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=V... 149 4e-34 UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus... 149 4e-34 UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleospori... 149 5e-34 UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-te... 148 6e-34 UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister in... 148 7e-34 UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria Rep... 148 8e-34 UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevi... 148 8e-34 UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=... 148 8e-34 UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterob... 147 1e-33 UniRef50_UPI000192574D PREDICTED: similar to Werner helicase int... 147 1e-33 UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacte... 147 1e-33 UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosa... 147 1e-33 UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/r... 147 1e-33 UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrog... 147 1e-33 UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus ... 147 1e-33 UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=... 147 1e-33 UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=... 147 2e-33 UniRef50_Q46AT6 Replication factor C large subunit n=4 Tax=Metha... 147 2e-33 UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothi... 146 2e-33 UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=d... 146 2e-33 UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 R... 146 2e-33 UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales ... 146 3e-33 UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=D... 146 3e-33 UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerot... 146 3e-33 UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR 145 3e-33 UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacter... 145 4e-33 UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacill... 145 4e-33 UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-lik... 145 4e-33 UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacte... 145 5e-33 UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alterom... 145 5e-33 UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax... 145 5e-33 UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5... 145 5e-33 UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Ta... 145 6e-33 UniRef50_C2KTQ5 Possible DNA polymerase III subunit delta' n=2 T... 145 7e-33 UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 144 8e-33 UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bact... 144 8e-33 UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=... 144 8e-33 UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex... 144 9e-33 UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdema... 144 9e-33 UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_L... 144 1e-32 UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=... 144 1e-32 UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endo... 144 1e-32 UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultu... 144 1e-32 UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchne... 143 1e-32 UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriob... 143 1e-32 UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Prote... 143 2e-32 UniRef50_P0AAZ6 Replication-associated recombination protein A n... 143 2e-32 UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=... 143 2e-32 UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopob... 143 2e-32 UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=... 143 2e-32 UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizob... 143 2e-32 UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Ta... 143 2e-32 UniRef50_D2UXA6 Predicted protein n=1 Tax=Naegleria gruberi RepI... 143 3e-32 UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=... 143 3e-32 UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilag... 143 3e-32 UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 143 3e-32 UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU 143 3e-32 UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=... 142 3e-32 UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacte... 142 3e-32 UniRef50_Q6WI74 Gp44 n=1 Tax=Vibrio phage KVP40 RepID=Q6WI74_BPKV4 142 3e-32 UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=... 142 3e-32 UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH 142 3e-32 UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=... 142 3e-32 UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=... 142 4e-32 UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota Re... 142 4e-32 UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n... 142 6e-32 UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD 142 6e-32 UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alpha... 142 6e-32 UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax... 142 6e-32 UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysini... 141 7e-32 UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=... 141 7e-32 UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bi... 141 7e-32 UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobi... 141 8e-32 UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacter... 141 9e-32 UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacter... 140 1e-31 UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacte... 140 1e-31 UniRef50_O34528 Uncharacterized AAA domain-containing protein yr... 140 1e-31 UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 140 1e-31 UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1... 140 1e-31 UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=... 140 1e-31 UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=... 140 1e-31 UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodom... 140 1e-31 UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actin... 140 1e-31 UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archae... 140 1e-31 UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Metha... 140 1e-31 UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacter... 140 2e-31 UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Aceto... 140 2e-31 UniRef50_A2QW62 Function: WHIP of M. musculus is involved in agi... 140 2e-31 UniRef50_Q7VR24 DNA polymerase III, delta prime subunit n=2 Tax=... 140 2e-31 UniRef50_A9BKX0 Rfc2 n=1 Tax=Cryptophyta RepID=A9BKX0_9CRYP 140 2e-31 UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campyl... 140 2e-31 UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit... 140 2e-31 UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=... 139 4e-31 UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n... 139 4e-31 UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=... 138 5e-31 UniRef50_D2RCC6 DNA polymerase III, delta' subunit family protei... 138 5e-31 UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K... 138 6e-31 UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida... 138 6e-31 UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Eurya... 138 6e-31 UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepI... 138 7e-31 UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrob... 138 7e-31 UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax... 138 7e-31 UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30... 137 9e-31 UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desul... 137 9e-31 UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine ... 137 9e-31 UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6B... 137 1e-30 UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB 137 1e-30 UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=... 137 1e-30 UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinom... 137 1e-30 UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyo... 137 1e-30 UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ... 137 1e-30 UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Therm... 137 1e-30 UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID... 137 2e-30 UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1... 137 2e-30 UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydroge... 137 2e-30 UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase int... 137 2e-30 UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=... 137 2e-30 UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collins... 136 2e-30 UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=T... 136 2e-30 UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacte... 136 2e-30 UniRef50_A5GNS9 ATPase related to the helicase subunit of the Ho... 136 2e-30 UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase int... 136 2e-30 UniRef50_UPI00015B415D PREDICTED: similar to werner helicase int... 136 2e-30 UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyc... 136 3e-30 UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=... 136 3e-30 UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens ... 135 3e-30 UniRef50_Q89AG8 DNA polymerase III subunit delta' n=1 Tax=Buchne... 135 4e-30 UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepI... 135 4e-30 UniRef50_Q8QN66 EsV-1-224 n=1 Tax=Ectocarpus siliculosus virus 1... 135 4e-30 UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A... 135 4e-30 UniRef50_B8FY25 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 135 5e-30 UniRef50_B2S5K7 Replication factor C conserved domain protein n=... 135 5e-30 UniRef50_A8LF28 DNA-directed DNA polymerase n=10 Tax=Actinomycet... 135 6e-30 UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospiri... 135 6e-30 UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IX... 135 6e-30 UniRef50_D0LQE3 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 135 6e-30 UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 T... 135 7e-30 UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemell... 135 7e-30 UniRef50_D2RSM2 AAA ATPase central domain protein n=1 Tax=Halote... 134 9e-30 UniRef50_C5DIS0 KLTH0E14696p n=2 Tax=Saccharomycetales RepID=C5D... 134 1e-29 UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=S... 133 1e-29 UniRef50_B3PM47 ATPase, related to the helicase subunit of the H... 133 1e-29 UniRef50_Q5UQ47 Putative replication factor C small subunit R395... 133 1e-29 UniRef50_Q8TZC5 Replication factor C large subunit n=1 Tax=Metha... 133 1e-29 UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax... 133 2e-29 UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=... 133 2e-29 UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacterio... 133 2e-29 UniRef50_Q2FUA8 Replication factor C subunit n=1 Tax=Methanospir... 133 2e-29 UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4... 133 2e-29 UniRef50_Q4Q084 Replication factor C, subunit 5, putative n=5 Ta... 133 3e-29 UniRef50_A2E870 Putative uncharacterized protein n=1 Tax=Trichom... 133 3e-29 UniRef50_A0CIK7 Chromosome undetermined scaffold_19, whole genom... 133 3e-29 UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID... 132 3e-29 UniRef50_Q1YNM8 DNA polymerase III, delta prime subunit domain p... 132 3e-29 UniRef50_A0NSR3 DNA polymerase III subunit delta' n=2 Tax=Rhodob... 132 3e-29 UniRef50_O64301 DNA polymerase accessory protein 44 n=13 Tax=T4-... 132 3e-29 UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 ... 132 3e-29 UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macroco... 132 4e-29 UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Ta... 132 4e-29 UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulf... 132 4e-29 UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera ... 132 4e-29 UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=... 132 5e-29 UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=... 132 5e-29 UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI 132 5e-29 UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, ... 132 5e-29 UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau su... 132 5e-29 UniRef50_C8SAL8 AAA ATPase central domain protein n=1 Tax=Ferrog... 132 5e-29 UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylo... 132 5e-29 UniRef50_P40938 Replication factor C subunit 3 n=106 Tax=Eukaryo... 132 5e-29 UniRef50_O29072 Replication factor C large subunit n=1 Tax=Archa... 132 6e-29 UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_... 132 6e-29 UniRef50_A8TUR1 ATPase involved in DNA replication n=1 Tax=alpha... 132 6e-29 UniRef50_B9QRU5 Putative uncharacterized protein n=1 Tax=Labrenz... 132 6e-29 UniRef50_A7INF3 DNA-directed DNA polymerase n=2 Tax=Xanthobacter... 131 7e-29 UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like prote... 131 7e-29 UniRef50_Q1AUM0 DNA polymerase III, delta prime subunit n=1 Tax=... 131 8e-29 UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=... 131 8e-29 UniRef50_A8MD97 AAA ATPase central domain protein n=1 Tax=Caldiv... 131 8e-29 UniRef50_B9TJX7 Putative uncharacterized protein n=1 Tax=Ricinus... 131 8e-29 UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsul... 131 8e-29 UniRef50_Q46HP5 DNA polymerase III, delta prime subunit n=2 Tax=... 131 8e-29 UniRef50_Q045U3 DNA replication ATPase n=8 Tax=Lactobacillus Rep... 131 9e-29 UniRef50_Q01Q28 DNA polymerase III, delta prime subunit n=1 Tax=... 131 9e-29 UniRef50_A3UCJ6 DNA polymerase III, delta prime subunit n=1 Tax=... 131 9e-29 UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis AT... 131 9e-29 UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like prote... 131 1e-28 UniRef50_A2BL93 Replication factor C large subunit n=3 Tax=Desul... 131 1e-28 UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacte... 130 1e-28 UniRef50_Q31HQ8 DNA polymerase III, delta prime subunit n=1 Tax=... 130 1e-28 UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrot... 130 1e-28 UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrio... 130 1e-28 UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN 130 1e-28 UniRef50_B8GWH2 DNA polymerase III, delta' subunit n=7 Tax=Caulo... 130 1e-28 UniRef50_B7XHX1 Replication factor C subunit n=1 Tax=Enterocytoz... 130 1e-28 UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacte... 130 2e-28 UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Paste... 130 2e-28 UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=... 130 2e-28 UniRef50_C8WFU3 DNA-directed DNA polymerase n=4 Tax=Sphingomonad... 130 2e-28 UniRef50_C9DGI4 Gp44 clamp-loader subunit n=1 Tax=Deftia phage p... 130 2e-28 UniRef50_C3N5N1 Replication factor C large subunit n=12 Tax=Sulf... 130 2e-28 UniRef50_Q3IHC2 Putative DNA polymerase III delta' subunit n=2 T... 130 2e-28 UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=... 129 3e-28 UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv... 129 3e-28 UniRef50_C4V742 Putative uncharacterized protein n=1 Tax=Nosema ... 129 3e-28 UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n... 129 3e-28 UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ... 129 4e-28 UniRef50_C9M5W8 Replication-associated recombination protein A n... 129 4e-28 UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria Re... 129 4e-28 UniRef50_D0L216 DNA-directed DNA polymerase n=1 Tax=Halothiobaci... 128 5e-28 UniRef50_Q8SR43 DNA REPLICATION FACTOR C 38kDa SUBUNIT n=1 Tax=E... 128 5e-28 UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardne... 128 5e-28 UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 ... 128 5e-28 UniRef50_D0WK13 Putative DNA polymerase III, delta' subunit n=1 ... 128 7e-28 UniRef50_A6D7X6 DNA polymerase III subunit delta' n=1 Tax=Vibrio... 128 7e-28 UniRef50_A3WR60 DNA polymerase III subunits gamma and tau n=1 Ta... 128 7e-28 UniRef50_A5WF95 DNA polymerase III, delta prime subunit n=1 Tax=... 128 8e-28 UniRef50_A0Z287 DNA polymerase III subunit delta n=1 Tax=marine ... 128 8e-28 UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba Re... 128 8e-28 UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q... 128 9e-28 UniRef50_Q043K3 Helicase subunit of the Holliday junction resolv... 128 9e-28 UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=... 127 1e-27 UniRef50_P38251 Replication factor C subunit 5 n=17 Tax=Saccharo... 127 1e-27 UniRef50_A7VYT2 Putative uncharacterized protein n=1 Tax=Clostri... 127 1e-27 UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostri... 127 1e-27 UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJ... 127 1e-27 UniRef50_B1IBA3 DNA polymerase III subunit delta n=36 Tax=Strept... 127 1e-27 UniRef50_Q0W3P4 Replication factor C large subunit n=2 Tax=Eurya... 127 1e-27 UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria Rep... 127 2e-27 UniRef50_A4CAL1 Putative DNA polymerase III delta' subunit n=1 T... 127 2e-27 UniRef50_B6AL71 DNA polymerase III n=2 Tax=Leptospirillum sp. Gr... 126 2e-27 UniRef50_D1JAL6 Putative replication factor C, large subunit n=1... 126 2e-27 UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea s... 126 2e-27 UniRef50_Q5JHP1 Replication factor C large subunit n=7 Tax=Therm... 126 3e-27 UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase s... 126 3e-27 UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase ... 126 3e-27 UniRef50_O94697 Replication factor C subunit 5 n=2 Tax=Schizosac... 125 4e-27 UniRef50_B3QKH2 DNA polymerase III subunit delta' n=14 Tax=Brady... 125 4e-27 UniRef50_A5IBP2 DNA polymerase III, delta prime subunit n=5 Tax=... 125 4e-27 UniRef50_Q12AK7 DNA-directed DNA polymerase n=5 Tax=Comamonadace... 125 5e-27 UniRef50_C2BUI4 DNA polymerase III, delta prime subunit n=1 Tax=... 125 5e-27 UniRef50_A5EXC7 DNA polymerase III, delta' subunit n=1 Tax=Diche... 125 5e-27 Sequences not found previously or not previously below threshold: >UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enterobacteriaceae RepID=DPO3X_ECOLI Length = 643 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 643/643 (100%), Positives = 643/643 (100%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA Sbjct: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH Sbjct: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ Sbjct: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA Sbjct: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA Sbjct: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL Sbjct: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI Sbjct: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 >UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 Tax=Enterobacteriaceae RepID=D0ZED4_EDWTE Length = 689 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 442/652 (67%), Positives = 508/652 (77%), Gaps = 9/652 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 38 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 97 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDL+EIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 98 GLNCETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRF 157 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQFHL+ALD Sbjct: 158 KVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLRALDH 217 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR QLE I + E + EPRALQLLARAAEGS+RDALSLTDQAIA G GQ++ AVS M Sbjct: 218 EQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAMGQGQITADAVSQM 277 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDD+Q L+L+EA+ A+G VMA + +AA RG++WE LLVEML LLHR+AM+QL P+ Sbjct: 278 LGTLDDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENLLVEMLALLHRVAMLQLLPS 337 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + AA+E R+RELAR +PP D+QL+YQ LL GRKEL +APDRRMGVEMTLLRALAFH Sbjct: 338 ALDSQFAAVEPRLRELARMLPPADLQLFYQILLNGRKELAFAPDRRMGVEMTLLRALAFH 397 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA------ 414 P+ + EP + AV P S PTV P + + Sbjct: 398 PKAVIAEPSPAPSAAQGGDIPAVPATVAQRVAPPSPATVPPTVSAPPQAASAVPESTAQL 457 Query: 415 --ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 AR +L++ K AA + ++ALERLAS+++R Q + + E+A + Sbjct: 458 LQARSRLRQKAAGGSEPKKSEPAAPQRAQPASSALERLASISERGQQKIASAEQEQASTR 517 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 KEAYRWKA +++K TPKAL+ ALEHEKTPELAA LA E++ RD WA ++SQL L Sbjct: 518 KEAYRWKAQNRPVEEKAPKTTPKALRSALEHEKTPELAAHLAQESLTRDAWAQELSQLRL 577 Query: 533 PKLVEQVALNAWKEESD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 PKLV+Q+ALNA++E + +V LHLRS+QRHLN+ A+Q L +ALS G V L+IVED Sbjct: 578 PKLVQQLALNAFREPAPEGSVLLHLRSAQRHLNSASARQTLEQALSDHYGHPVALSIVED 637 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D+P RTPLEWRQAIYEE+LAQAR SI AD NIQTLRR FDAELDEESIRP+ Sbjct: 638 DDPQRRTPLEWRQAIYEERLAQARASIAADGNIQTLRRLFDAELDEESIRPV 689 >UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=4 Tax=Gammaproteobacteria RepID=A1U128_MARAV Length = 637 Score = 469 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 276/642 (42%), Positives = 356/642 (55%), Gaps = 11/642 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF D+VGQEHVL AL + L R+HHAYLF+GTRGVGKT+I RLLA+ Sbjct: 1 MSYQVLARKWRPRTFEDMVGQEHVLQALIHALEHQRLHHAYLFTGTRGVGKTTIGRLLAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT PCG CD+C+EI + RFVDLIEIDAASRT V+D R+L DNVQYAP RGR+ Sbjct: 61 CLNCETGITPNPCGECDSCKEILENRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHML+ SFNA LKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L+H+L EE I E AL LLARAA+GS+RDALSLTDQAIA G+ ++ VS M Sbjct: 181 EHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSLTDQAIAFGNENLAASDVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +V A+VE +G +++ IN + ++ +L +ML L HR+ M Q+ P Sbjct: 241 LGTIDQRDIQRIVNALVERDGPGLLSEINRISDFAPDYGVILSDMLSLFHRVTMEQVVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N M +++ELAR + D QL+YQT LIGRK+L PD RMG EMTLLR LAF Sbjct: 301 SADNAMGD-AAQVQELARRLSAEDAQLFYQTALIGRKDLSVTPDARMGFEMTLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P EP P + +P+ P + Q Sbjct: 360 PGTDRREP--------PALVSGNSNNGTAESEPEPGPVSQTASTQAVAAAPQPEPAPQPV 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + +P P A + + P + + A + A Sbjct: 412 PSPEPVAELEPQPPMVDDPPPWEPEDYGVQAESPEWQEPVPQSDSSIEPDASAISEPESA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 PV V + + +AL +E A + W L + + +A Sbjct: 472 PEPVSASDPVQSE-QNAGQALVNEPELAPAEPEQPVTADGFVWERDFRSLGITGMPGNLA 530 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + AV L L L N ++K+ AL G +L I + P + TP Sbjct: 531 SYSSMRMEGQAVVLTLDEGHARLLNARHEEKILAALRSRFGDATQLKIEQG-VPGLHTPA 589 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + + + A ESI D ++++ F+ + EESIRP Sbjct: 590 AFEERQRAARQKAAEESIRQDPLVKSIVERFEGRVVEESIRP 631 >UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=8 Tax=Gammaproteobacteria RepID=Q21L32_SACD2 Length = 690 Score = 450 bits (1156), Expect = e-125, Method: Composition-based stats. Identities = 280/688 (40%), Positives = 381/688 (55%), Gaps = 49/688 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF +++GQEHVL AL N L GR+HHAYLF+GTRGVGKTSIAR+LAK Sbjct: 1 MSYQVLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+++ PCG C C EI +GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCETGVSSEPCGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 KIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L HIL +E I E AL LAR+A+GS+RDALSLTDQ+I+ G G+VS V++M Sbjct: 181 ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +LV A++ +G +++ + + A +++ L +++ LLHRIA+ Q P Sbjct: 241 LGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLLHRIAIAQALPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N ++ E A + P D+QL+YQT LIGR++L +PD R G EMTLLR LAF Sbjct: 301 ALDNSYGD-RTQILEFASKLAPEDVQLFYQTALIGRRDLSLSPDPRSGFEMTLLRMLAFK 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVM--------------------TPTQVPPQPQSAPQQA 400 P+ P Q+ AP + + + P + Q Sbjct: 360 PQGVADVPTQRLQAQPASAPASSSDVASVAAPAAPTAQAAPQPSSNVEPAPAQAAPEQTE 419 Query: 401 PTVPLPETTSQVLAARQQLQRVQGAT--------------------KAKKSEPAAATRAR 440 P+ P + Q A ++ + A + Sbjct: 420 PSPPAQTSPPQQNVAPNTVEDNSPPADYYDNMPPYEEAQEPVKKPQAEPQQAQAEVPASE 479 Query: 441 PVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVM------QQKEVVATP 494 P + + + + QA P APAK A + + A Sbjct: 480 PAPLGPMHTVVTAAESTQAVAEPEVNTSAPAKTPADALREQVKAIVGKEGISAPPKPAQQ 539 Query: 495 KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVC 553 A P + ++ E + W + +QL++ +++ A N DN + Sbjct: 540 LKNTPAAPINAAPVVTTPISLEELTPSHWVSVYNQLNVKGILQSTAANTVLIGREDNHLD 599 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD-NPAVRTPLEWRQAIYEEKLA 612 L + L + +L+ LS G ++ I + + TP + I +EK Sbjct: 600 FALDEQKSSLFDPSHSDRLSALLSDYFGVPIKAAIHLQNLPGDLETPAAYAIRIDQEKRV 659 Query: 613 QARESIIADNNIQTLRRFFDAELDEESI 640 A +++ D +QTL++ F+A L EE++ Sbjct: 660 AAIQNMYDDPVVQTLQQQFNATLVEETV 687 >UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q0A8H8_ALHEH Length = 648 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 275/648 (42%), Positives = 357/648 (55%), Gaps = 14/648 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+++ GQEHVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MAYQVLARKWRPRTFSEMAGQEHVLRALVNALEQQRLHHAYLFTGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TA PCG CD CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVTAEPCGTCDACRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLPG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L ++ +E +A EP+AL L +AA+GS+RDALSL DQAIA G G V V AM Sbjct: 181 GLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLLDQAIAFGAGAVREDEVCAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D L +EA+ +G ++A+ + R ++ L E+L LH++A++Q+ P Sbjct: 241 LGTIDRGFVLEALEALAAGDGRALLAVTARMSERAPDFSDALDELLHCLHQLALLQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL R+R+LA +P D+QLYYQ L GR++LP AP+ R G EM LLR LAF Sbjct: 301 ALPAGDPD-ADRLRDLAARLPAEDVQLYYQIALNGRRDLPLAPEGRTGFEMVLLRMLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P A +P + P++ P P T + A Sbjct: 360 PVTGTAVAATGGAGADAPPAAAAGSPRSQAAPKATRPRREA-HPSPTPTERAEPAAAPAG 418 Query: 421 RVQGATKAK-----KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + A R + V + E A + Sbjct: 419 GSPPPEQGGGLGGYREALMRAARGQAVEPDGPAPAPADPSAAAEPAPAGGREPAAGLTDP 478 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 W PV ++ + E T I + W + L L Sbjct: 479 PAWAEGPPVSDEEPPPIGAQPAAAETAPETTA-----PDDAGITPETWPWRARDLPLDGA 533 Query: 536 VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + Q A + W E + V L L S L + +LA+ L G V L + ++P Sbjct: 534 LRQFAAHCEWVGEEEGRVILRLDSGHGMLRTPALEAELAQVLGDYLGRAVRLDVRL-ESP 592 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TP + E+L ARES+ D N+ L + F AEL +++RP Sbjct: 593 HRDTPATVARRERAERLRAARESLENDPNVARLHQRFGAELLPDTVRP 640 >UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB0_9GAMM Length = 647 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 361/649 (55%), Gaps = 9/649 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FA++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPRIFAEMAGQQHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GRF+DLIE+DAASRT V+D R+LLDNVQYAP+RGR+ Sbjct: 61 CLNCEVGVSSVPCGECSSCTEIGEGRFIDLIEVDAASRTGVDDMRELLDNVQYAPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+ SF ALLKTLEEPP HVKFL ATTDPQKLP+T+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSRCLQFNLKNLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L+ +L EE + E AL LARAA+GS+RDALSLTDQAI G GQV+ VSAM Sbjct: 181 ERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSLTDQAIGHGGGQVNEGEVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + + +A++ +G ++A I A + +++A L ++L + H++A+VQ P Sbjct: 241 LGTIERSYVVDICQALISGSGTELLAAIGRMAEQAPDYDAALTDILSVWHQVAIVQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +A + LA + D QL+YQ L+GRK+L +PD + G EM +LRALAF Sbjct: 301 ALDKGVANYTE-LLALAAAVSREDTQLFYQICLLGRKDLQLSPDAKSGFEMVMLRALAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT-----VPLPETTSQVLAA 415 P+ P+ A AV P +V P + PL V A Sbjct: 360 PQTSAQVGSGPKAVAKAQASAAVAPPLEVEPSGKKPEAVVTAVVDDRPPLEPAVEAVAEA 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + A EP A + + V ++ A + Sbjct: 420 VSAPESTVKPVTAAPVEPTAQLVVESPVEVYQKSVQPTGYDGVQEAVQKTVDGAVGQPIE 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T ++ P + L+ + A + E D W QLS+ Sbjct: 480 ETVDETIKETIEEASE-KPSQERTPLQTPEAAPAPAPIPLERFTPDNWIQLRRQLSIGAS 538 Query: 536 VEQVALNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + ++A + S + + S L + Q++ +EALS V + I Sbjct: 539 LGEIASHCLYLGRSGQQLNFLIDSDHNSLYDEPHQEQFSEALSDYFQQPVTVDITLG-VA 597 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E+L +A +S+ D + ++ FD ELDE S+RPI Sbjct: 598 EKETPRAATTREKAERLVEAVDSLNQDPAVVKFKQLFDGELDERSVRPI 646 >UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxalobacter formigenes RepID=C3XBH9_OXAFO Length = 604 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 227/646 (35%), Positives = 334/646 (51%), Gaps = 45/646 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F ++VGQ+HV+ AL++ L R+HHAYLF+GTRG+GKT+++R+LAK Sbjct: 1 MSYLVLARKYRPKNFENIVGQDHVVRALSHALESQRLHHAYLFTGTRGIGKTTLSRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA+PCG+C+ C+ I+ RFVD +E+DAAS + D LL+ YAP RF Sbjct: 61 SLNCEKGITASPCGICEACKAIDSDRFVDYVEMDAASNRGIADMLQLLEQAVYAPTAARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNA+LKTLEEPPE+VKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E+I E AL+LLA+ A+GS+RDALSL DQAIA G V+ +AV M Sbjct: 181 SHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTAGHVTDEAVQDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++ + +G ++ + +E A R + + L ++ LL +IAM+Q P Sbjct: 241 LGALDQTYLIRLLDHLANRDGTSLLKVADEMAFRSLSYSTALQDLGLLLQKIAMIQSVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +D+A + LA P ++QLYYQ + GR EL APD G MTLLR LAF Sbjct: 301 YPLDDIAD-SDNLSRLAAIFSPEELQLYYQIAIHGRNELGLAPDEYAGFSMTLLRMLAF- 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P + + A + + Q + + ++ Sbjct: 359 ---------------SPDKGNRSIPQIVSKSERTPANRPKTDSGKGQAVEQKVPSSPVVE 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ K + +A + + + + + + + + A + A Sbjct: 404 KIPVPEKKPEETVSAIPPWVDDESFSNQGGQTAKSPEVKKNESAPVTEVVALAMSAEMPA 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 K E W + L + +V+Q+A Sbjct: 464 -----------------------APADVPVKKNPGEGSWNGNWPELAAVLPVRGMVQQLA 500 Query: 541 LNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 E+ D+A LHL+S L +L E L+ G V++T Sbjct: 501 QQTELVHWEKKDSACVLHLKSPIATLCTPNNINRLTEVLAEHFGQPVKITTEIG--KVEE 558 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 T + E+ QA E+I D ++++ F + E S++P+ Sbjct: 559 TANQNAIEARAERQRQAEEAITNDPYVKSVIAEFGGHIVEGSVKPV 604 >UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pasteurellaceae RepID=DPO3X_HAEIN Length = 688 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 316/693 (45%), Positives = 418/693 (60%), Gaps = 55/693 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQEH++TALANGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TATPCG C+NC+ IEQG F+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLKALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L HIL +E+I E AL LA+AA+GS+RD+LSLTDQAIA GD QV+ VS M Sbjct: 181 TQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+ ++ ++ A+ + NGE +M + A +W+ LL E LH+IA++QL P Sbjct: 241 LGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + LA+ I P ++Q +YQ ++ GRK+L AP+RR+G EMTLLRALAFH Sbjct: 301 K----SSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFH 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQV---PPQPQSAPQQAPTVPLPETTS------- 410 P+ P+ P + + + T P + + A + P TS Sbjct: 357 PKFLTAVPKANTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAYSQAKPNKTSIPNLASL 416 Query: 411 QVLAARQQLQRVQGATKA---------------------------------------KKS 431 L A + L +++ + K Sbjct: 417 SALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKP 476 Query: 432 EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV 491 + A ++ ++ + + E+ + YRW+ + P + + + Sbjct: 477 KHIEKPTLPSNAAQAPQKNSTEENSSDDNVEIAQDEQEILSADTYRWEWSNPELAKADTG 536 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDN 550 P +K+A+ + TPEL K+ + ++D WA V + L +++ALN + ++D+ Sbjct: 537 VCPSDIKQAILKDITPELRLKIITQTQQQDQWADIVERSGLTGFSKELALNCFLQSKTDD 596 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 + L L S + HL + + LAEALS L+G + LTI DD+ V TP+E+R+ IY+ Sbjct: 597 EINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLDDS-NVTTPIEYRRNIYQAL 655 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +A+ + D+ +Q L FDA+LD ESIRP+ Sbjct: 656 REKAQNELQKDSKLQILLNEFDAKLDVESIRPV 688 >UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q0VNM5_ALCBS Length = 615 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 268/643 (41%), Positives = 363/643 (56%), Gaps = 34/643 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I ++ AL L +AAEGS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSLTDQAIAFGGEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALASVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM LLR + F Sbjct: 301 S-------YDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLLLRMVLFT 353 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ +V P V + + L +T + A Sbjct: 354 ----------PKGVLVQGDNPSVKKPKAVASSEEPGDKPDLRALLNKTPAAAPAPVSLPT 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + EP+ A A + P SA+ AP++ Sbjct: 404 PASASAPVTAPEPSPTRAAPAAAEQAASADDAPPWDESPGPSTSAVAVAPSQ-------- 455 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 E A P+ + + + A+ EA WAA + +L + V +A Sbjct: 456 -------SEPQAEPEPNQAPTQEVEPLAPLAEPTNEAEVATWWAALLLRLDVDGTVRNIA 508 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L NR ++L+ AL +++ + + P TP Sbjct: 509 RNAVLISREESVWTLRISPGHQVLVNRERLEELSGALGNYFQRRIQVQVEFEQQPGA-TP 567 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E L QA++++ +D +Q L F LD+ES+ P Sbjct: 568 EVIAEARRQELLLQAKDTLHSDPVVQQLITTFGGRLDDESVTP 610 >UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE5_METSD Length = 610 Score = 437 bits (1122), Expect = e-121, Method: Composition-based stats. Identities = 246/645 (38%), Positives = 341/645 (52%), Gaps = 38/645 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCGVC C +I++GRFVD++E+DAAS T+V+ R+LLDN QYAP GRF Sbjct: 61 SLNCETGITAHPCGVCSACVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYAPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLSR +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+L+ + Sbjct: 121 KVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFNLRQMST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L+ +L +E+I + ALQL++RAA GS+RDALSL DQAIA G +V+ V AM Sbjct: 181 PAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIAYGGNRVNESEVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L++A++ +G +MA R + ++ L ++ LLH +A+ Q P Sbjct: 241 LGAIDQSYLYGLLDALIAQDGPSLMAQAKSMEERSLSFDTALADLAQLLHHLAVAQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ D+ + +LA +P +QLYYQ L+GR++L APD G M LLR LAF Sbjct: 301 SIPLDLPE-RTALLDLATKLPADKVQLYYQIALLGRRDLGLAPDEFAGFTMCLLRMLAF- 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +S + APT P P + + +A Sbjct: 359 -------------------------------SNESTSKPAPTAPAPSGSDRPIAQHAGSA 387 Query: 421 RVQGATKAKK-SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A S + + +A T + A Sbjct: 388 ASALAAATMARSATPSPAAIASPPTPQAKPVAEATMVTSNEVDVAPATAPAAATPVATVA 447 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 T + V++P+ A + + + W V +L L L + Sbjct: 448 ETPADVPTHSQVSSPEPAYTAASEPTLASSPVEDSLQEEFDGNWRLLVDKLKL-GLARAL 506 Query: 540 ALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A + + + + L + + +HL + Q+KL A+ G + L T Sbjct: 507 AQHCELIGHTADRLELQVPEAHKHLLDPNYQEKLKAAIEAHFGRKMHLQFSIG--GGNNT 564 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P E +QA SI D +Q L R F A++ SI+P+ Sbjct: 565 PAHQISQEKAELQSQAESSIQQDGFVQALMRDFGAQIIPSSIKPL 609 >UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 Tax=Pasteurellaceae RepID=A6VMZ2_ACTSZ Length = 699 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 319/704 (45%), Positives = 423/704 (60%), Gaps = 66/704 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F V+GQEH+LTALANGL R+HHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQNFHQVIGQEHILTALANGLKENRLHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE G F+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCIHGVTAEPCGECEHCKAIENGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L +IL +E I EP AL +A+AA+GS+RD+LSLTDQAIA + + V+ M Sbjct: 181 QQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIAMSNADIRVDVVNIM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+Q + ++ A+ + NGE++M I A G +W+ LL+E+ LH+IAM+QL P Sbjct: 241 LGLLDDNQPIEILYALHQGNGEKLMQGIQAVADNGADWDELLIEVGEALHQIAMLQLLPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + E ++ LA+ I P +IQ +YQ + +GRKEL +AP+RR+G EMTLLRALAFH Sbjct: 301 RI-----DEESQLGFLAKHISPENIQFFYQIVTMGRKELAFAPNRRIGAEMTLLRALAFH 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-------------------PQPQSAPQQAP 401 P+ EP + + + Q P Sbjct: 356 PKFSRAEPAEHQVNSTVQDSARAHPEKESAVKKTINLVEMPVYNQHLRVSATPQREQSPP 415 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 ++TS L A Q++R++ + ++ S +P L V+ + RP Sbjct: 416 GNLSGKSTSNALNALAQIERLRASVRSAASTEEKTGFEQPQPAVQAHELPVVSMPQKERP 475 Query: 462 VPSALEKAPAKKEAYR---------------------------------------WKATT 482 +++ + + + W+ Sbjct: 476 QTDLIDRLASLAQQAQDNLNPAVKRKSVSKPVSDSTQETENEDDSDDANLAETYRWEWIN 535 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP--KLVEQVA 540 P M + E V P +K+A+ EKTPEL K+ A A ERD W V L L KLV+Q+A Sbjct: 536 PEMAEAENVIRPSEIKQAILKEKTPELVKKVIALAEERDDWTKTVEHLGLDHLKLVKQIA 595 Query: 541 LNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 LN+ ++D+ + L LRS+Q+HL A + L AL + G + L I +D+ TP Sbjct: 596 LNSVILAQTDSEIVLGLRSNQKHLQRESAIEALQAALKVYYGKDLRLKIELNDDERRPTP 655 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 L++R+ IY E +AR+ + AD ++ L++ FDA LD +SIRP+ Sbjct: 656 LDYRRQIYHELSERARQDLQADKKVKLLQQAFDAHLDLDSIRPV 699 >UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fischeri RepID=B5FFM6_VIBFM Length = 709 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 305/712 (42%), Positives = 395/712 (55%), Gaps = 72/712 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ E RAL L+A AA+GS+RDALSLTDQAIA G+G V+ + VSAM Sbjct: 181 DQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIALGNGSVTAEIVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M +N+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ +L RK+LP AP+ R G EM LLR +AF Sbjct: 301 TLDKTQPD-AERIELLSTQLSPQEVQLFYQIVLQSRKDLPLAPNERTGAEMMLLRMVAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P P AP P T+ Q +QQ Q Sbjct: 360 PVHAQALEAQPIAVPSTEPQAINTAPRVQQQAPSVPANVAPQAQRPMTSQQRPTMQQQTQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE------ 474 + ++ Q+ +++ PA + Sbjct: 420 QGHAPANVPPMHSEQPPMYDAPPMGTPSGESASQAPQQSSSAQPPMQETPAPRSGLLGVR 479 Query: 475 ----------------------------------------------AYRWKATTPVMQQK 488 + ++K Sbjct: 480 NQLRSAKNNLTNTGTGSKKASAASDKKKTSSVLERIAEKQHLAPRAQVSQIGNSATQEKK 539 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-----------------QLS 531 + + ++ +A+E + V L+ Sbjct: 540 PEEPYRWKSTQPEMKKVVSDVTPTKLKQALEHEKTPEMVKLLVEESSKQDTWSALAMSLT 599 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 LPKLV+Q+ LN+ E DN + LHLR++Q HLN A + + +AL+ V +TI Sbjct: 600 LPKLVQQLVLNSAFVEQDNQIKLHLRAAQSHLNGDKANELITQALTQTLNREVTITIDIS 659 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D TPLE R+ +Y+ KL A +S+ D ++ + F AE+D+ES+RPI Sbjct: 660 DEGT--TPLELREQMYQTKLQTAYQSLQQDPHVNFFIQRFGAEMDQESVRPI 709 >UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4U2_9GAMM Length = 635 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 258/643 (40%), Positives = 356/643 (55%), Gaps = 14/643 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I +E AL L +AA+GS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSLTDQAIAFGSEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALATVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM L Sbjct: 301 S-------YDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLL-----LR 348 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + P+ + + P+ P + P + S+ A Sbjct: 349 MVLFTPKGVLVQGDSPAAKKPEAAVPSAEPGGKPDLRALLNSPPAAASHSEPAARPAAQP 408 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A+ + + + ++ A + A Sbjct: 409 PEPAPATVTSAPAQQTAPVEAAAPASADDAPPWDEGPASSSPSASAALAQVEANQPEPAA 468 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + P+ + + A+ EA WAA + +L + V +A Sbjct: 469 EAAAAVAAQPQSDPEPNAEPAPESENLAPLAEPTNEAEVATWWAALLLRLDVDGTVRNIA 528 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L N+ ++L+ AL +++ + + P TP Sbjct: 529 RNAVLISREESVWTLRISPGHQVLVNKERLEELSGALGNYFQRRIQVQVEFEQQPG-ETP 587 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E LAQA++++ AD +Q L F LDEES+ P Sbjct: 588 ERMAEARRQELLAQAKDTLHADPVVQQLVTTFAGRLDEESVTP 630 >UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=cellular organisms RepID=Q7NXL6_CHRVO Length = 639 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 265/645 (41%), Positives = 361/645 (55%), Gaps = 10/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG TA PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GRF Sbjct: 61 SLNCETGTTAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYAPTMGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E I +E AL LL RAA GS+RDA SL DQAIA G G+V V AM Sbjct: 181 QQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAYGLGEVKEDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L++A+ ++G +MA + A RG+ +++ L E+ LL ++A+ Q PA Sbjct: 241 LGAVDRRYLFTLLQALAASDGPALMAEADRLAERGVSFDSALSELAVLLQQLALAQTVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL D + LA I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 301 ALAADEPE-RDTLFALADAIAPQDVQLYYQIAIHGRKDLALAPDEHAGFNMTLLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + A V P V ++ + + L A+ Q + Sbjct: 360 PANAPAQTAAPARPAAAVQPRPVAASAAAVASVSVPAERGMSPAARALQAAGLGAQAQGK 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +A+ + Q P +A PA + Sbjct: 420 PRAAEPSPAAEPEPEPAPLPSAVVSAVSEPSKPAPSPQPAPALAAPVSEPA------AQD 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVEQV 539 ++E+V P + A+ + W V+ L + Sbjct: 474 DEDERDEEEIVEAPWSDDDAMPAYMQQPPLEDEPSSYSFDGDWQRLVADLGAKLGAARML 533 Query: 540 ALNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A NA + S + + L + S RH++ R Q+KL AL+ G V+L + + + T Sbjct: 534 AHNAVLKRWSQDRLELAVPESFRHMSGRDYQEKLKAALAERFGHPVDLAVTV-EELGMET 592 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P + +E+LA ARE + D +Q + R F A L E+I+P+ Sbjct: 593 PAMTDARLRQEQLAVARECMQNDPVVQQMVREFGATLLIETIQPV 637 >UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 Tax=Xanthomonadaceae RepID=B0RYK4_XANCB Length = 752 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 249/654 (38%), Positives = 340/654 (51%), Gaps = 16/654 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK Sbjct: 100 MSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAK 159 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F Sbjct: 160 SLNCETGTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKF 219 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ +FNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK LD Sbjct: 220 KVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 279 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ Q+ IL E I +P A+ L++AA+GSLRD LSL DQAIA G + V M Sbjct: 280 DQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTM 339 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D Q ++++A+ + +G +++ ++ A +W +L + LHRI + QL P+ Sbjct: 340 LGTVDRTQVGAMLQALSDGDGAQLLKVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPS 399 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + P +QL+YQ L GR++L AP R G EM +LR LAF Sbjct: 400 VAFVGDGIDPT---GFAAQLRPEVVQLWYQMALNGRRDLYLAPSPRAGFEMAVLRMLAFR 456 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +P A T T V P +A Sbjct: 457 PAAAVPAGSGDDGRGASAGGHTRGTATGVQAAPAAAAPARAATSAKAADVSPAPVVSAPP 516 Query: 421 RVQGA------TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A +A AR + + A +A A Sbjct: 517 VAAAPSPVVVLPTAAAEPAPSAPPARTDDTPPWAVDDAPVRAQAAPQRATAEVPAAVPLM 576 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA-----EAIERDPWAAQVSQ 529 A P + + P AA + + W V++ Sbjct: 577 APEAAMALPATVADDAAPAAMDAVVPVAPPSAPAPVTPPAATFDDGHIADAEQWLELVTR 636 Query: 530 LSLPKLVEQVALN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 L Q+A N A+ D + L L +LN+ + LA+AL+ G+T + I Sbjct: 637 SGLNGPSRQLAANAAFIGHRDGVLRLALAPGFEYLNSERSIANLAQALAPELGNTPRIVI 696 Query: 589 VEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + V T E E+ + A + + D N+Q L + A + +SIRP Sbjct: 697 ETG-SADVETLHERANRQKGERQSAAETAFMNDPNVQQLIQQQGARVVPDSIRP 749 >UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax=Betaproteobacteria RepID=A6T0H3_JANMA Length = 673 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 243/676 (35%), Positives = 331/676 (48%), Gaps = 36/676 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP++F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 NC GIT+TPCGVC+ C I+ GRFVD IE+DAAS V++ LL+ YAP Sbjct: 61 SFNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + RFKVY+IDEVHML+ H+FN++LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L++IL +E+I E AL+LLA+ A GS+RDALSLTDQAIA G+V+ Sbjct: 181 KQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLD 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG LD + L++A+ E +G ++A+ +E A R + + A L ++ LLHR+A+ Sbjct: 241 AVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNAALQDLCTLLHRVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PAA+ D+ MR LA +IQL+YQ + GR EL APD G MTLLR Sbjct: 301 QTVPAAVPEDLPEYADVMR-LAGLFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P E + + P A +A A + Sbjct: 360 MLAFRPGFGPAEAKPVAAAAPAARPAAATPAVAPAASAPAARLSAAPQAASTSAPVARPT 419 Query: 416 RQQLQ------------------RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 + A A + A S + Sbjct: 420 GAMSPARAALEAARAGVKGAPAPAARPVAPAAPVAAPAPAAVAAPSPAMAVADRSPAIDM 479 Query: 458 QARPVPSALEKAP-----AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAK 512 P + + + T A P Sbjct: 480 APAPPWDDEPPFAGSNGIEEFSSPVAQKKTEPEPAAVAEAAPAPAPVPAAPRVARPFQLH 539 Query: 513 LAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-----EESDNAVCLHLRSSQRHLNNRG 567 A W A + L + + +Q+AL + + L + L G Sbjct: 540 PVASLNWDGNWPALAAILPVRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLANG 599 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + +KL L G TV L T A E+ +A +S+ D +Q L Sbjct: 600 SAEKLTAVLCEHFGQTVRLQTTIGAV--EHTASAAAIADRAERQREAEQSMQEDPFVQKL 657 Query: 628 RRFFDAELDEESIRPI 643 R F A + S++P+ Sbjct: 658 MREFGATIVPGSVKPV 673 >UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU95_9GAMM Length = 591 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 253/644 (39%), Positives = 348/644 (54%), Gaps = 56/644 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP++F ++VGQEHVL AL N L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MTYQVLARKWRPKSFGEMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GR VDL+E+DAASRTKVEDTR+LL+NVQYAP R R+ Sbjct: 61 CLNCEQGVSSHPCGECGSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFNLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L ++L E ++ E AL LL RAA GS+RDALSLTDQAIA G G++ V +M Sbjct: 181 EQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAFGSGKLIETDVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D L+E + + ++A++ A ++E E++ ++HR+A+ Q P Sbjct: 241 LGSVDLSFVYQLLEGVAAGDPAELLAIVGRMAEHAPDFEGSTDELISMVHRVAVAQAVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N R+ LA++I D QL+YQ + G++++ APD R G EM LLR LAF Sbjct: 301 AIDNSWGD-ADRVAALAQSIGAEDAQLFYQIAINGKRDMALAPDPRSGFEMLLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E + P Q +A + T P Q +LQ Sbjct: 360 PAAVIDESLGA---------ADLQPAPLNPDQGSTAGEVGATAKKPHEPRQEAVPSIELQ 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + A+ + + V+ P + + + Sbjct: 411 APEVSPQRPTERLKPEQPSNDADPASRQAVPLVSSPPPEVPESTPKVTGVILEPSP---- 466 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + W +SQL L +V+ +A Sbjct: 467 ----------------------------------------ENWPQLLSQLGLLGMVQSIA 486 Query: 541 LN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 N E + + L + L N G + K+ AL + + I + P +TP Sbjct: 487 SNMQLIEAAAGQLEFVLDTDNASLFNDGHRDKIRLALQNYLDRELSVAITVGEPPG-KTP 545 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + E+ QA E+I +D +Q L FD +LD SI P+ Sbjct: 546 AMIQAKAASERQKQAIEAIESDPRLQALITKFDGQLDRASIAPL 589 >UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z526_9NEIS Length = 657 Score = 422 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 276/648 (42%), Positives = 365/648 (56%), Gaps = 20/648 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FAD+VGQEHV+ AL N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 22 MTYQVLARKWRPKRFADLVGQEHVVRALTNALAGERLHHAYLLTGTRGVGKTTIARILAK 81 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GR+ Sbjct: 82 SLNCEAGVGAEPCGECSACRQIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTSGRY 141 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 142 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 201 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L +L+ E +++E AL LL RAA GS+RDALSL DQAIA G G+V V AM Sbjct: 202 QQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLLDQAIAYGVGKVEEGGVRAM 261 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+EA+ EA+G R++A A RG+ +++ L E+ LL +IA+ Q PA Sbjct: 262 LGAVDRAYLYTLLEALAEADGPRLIAEAKALAERGVGFDSALGELALLLQQIALAQTVPA 321 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D + LA+ I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 322 AITGDDPD-AEAVLALAQLIAPEDVQLYYQIAIHGRKDLALAPDEHAGFTMTLLRMLAFH 380 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P AP T P+P S P AP+ P E S A +L Sbjct: 381 PL------------NAPGDSTPTPRAAASRPEPASRPA-APSEPSVEGASAAKALLARLS 427 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 GA ++ + P + A P A A P E W+ Sbjct: 428 GRNGAARSAPATPDESAPADPEPEPARVEPAPRPVPAAPAVATQPEPGTPPSVELAPWED 487 Query: 481 TTPVMQQKEVVA---TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLV 536 A A A E P A + WAA V++L Sbjct: 488 APDDAGDVAAEAWQAGASADDSAAEAWSEPAAPPAAAEPYVFDGDWAALVAELGARMGAS 547 Query: 537 EQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 +A NA + D + L + S RHL R Q+KL AL+ G EL++ + Sbjct: 548 RMLAHNAVLKSWDGRRLQLAVPESFRHLATRDYQEKLKAALAERFGQAPELSVSV-EELG 606 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + TP +E+LA AR ++ D ++ L F+A L E+I+P+ Sbjct: 607 METPAMREARFRQEQLAAARVNLENDPVVRQLVGEFNAVLLTETIQPV 654 >UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KYG2_9GAMM Length = 672 Score = 417 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 245/643 (38%), Positives = 336/643 (52%), Gaps = 59/643 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQVLARKWRP F ++VGQ+HVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 84 MGYQVLARKWRPGNFQEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAK 143 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+++TPCG CD+C EI +GR VDL+E+DAASRTKVEDTR+LL+NV YAP R RF Sbjct: 144 CLNCDQGVSSTPCGTCDSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVLYAPTRSRF 203 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP H KFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 204 KIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSRCLQFNLKNMVP 263 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L +L EE +A + +L LLARAAEGS+RDALSLTDQAI GDG ++ V AM Sbjct: 264 EEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSLTDQAIGFGDGGLAESDVRAM 323 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L +++A+++ + + ++A+I + A+ ++ A L ++ +LH++ + Q P Sbjct: 324 LGTVDRARVLDVLDAILDNDPKTLLAVIEQIASHAPDYVATLDDLASVLHQVTIAQWVPD 383 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A+ R+ ++A + ++QL+YQ GR E+ +PD R +EM LLR +AF Sbjct: 384 AA-DPTASQSERIAKVAASTTVDEVQLFYQFAAAGRPEVQRSPDPRAALEMVLLRMIAF- 441 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P A VP P+ T + + Sbjct: 442 -------------------------------RPAEVISDAHEVPPPKKTEPPVPPVDSVG 470 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T PV A + A Sbjct: 471 AGAIETSGSAPSLTHEELRPPVRLAPRVVADQPEKADAIPAPIDPVVDA----------- 519 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P + A + L+ P A W A L+L + E +A Sbjct: 520 --PTSNPQPGPAESEPLEPPRVAADLPAPAE-----------WPAFFDDLALRGIAENIA 566 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ S + L S L N + E + V + + A TP Sbjct: 567 MHCELRSVSGRTLSFVLDQSNAGLFNERHVAAIEEQFNAHLQPPVTIEVEVGVVGAA-TP 625 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R + + A +++ D + T FDAE+ SI P Sbjct: 626 AARRAELEAARQKAAEDALAEDPVLTTFLADFDAEVIVGSIEP 668 >UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseriaceae RepID=C5TP18_NEIFL Length = 666 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 249/662 (37%), Positives = 364/662 (54%), Gaps = 22/662 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE + PCG C++C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCENAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+P+T+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E++ ++P+ALQLL RAA GS+RDALSL DQAIA G G+V+ Q V M Sbjct: 181 QQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGSGKVAEQDVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+E ++ NGE ++ E +AR I +++ L E+ LL R+A++Q P+ Sbjct: 241 IGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLLQRLALIQTIPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL ND + L++ + IQLYYQ + G+++LP APD G MTLLR LAF Sbjct: 301 ALANDDPE-RETLLRLSQALSGEQIQLYYQCAIHGKQDLPLAPDEYAGFVMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + + + P P+S P AP V ++ + Sbjct: 360 PLAASGCDTQSQIEHTDLHSDHQKAEAEKKPFQLPKSEPIAAPAVEKEAAPAKQDTVERS 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + + P V+ + + A+ + ++KAPA +E Sbjct: 420 SEETVQSVQQQADVPPWEEMPSQVSVESPQTQAAQMQEATEPLPVAKVQKAPAPEEYPHM 479 Query: 479 KATTPVM-------------QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 P V P A ++ E E E + + W + Sbjct: 480 DEEIPPPYFDEAYTYEDSHHADVMEVPQPVASAESEEEEGDEEELQFAPLPEFKTENWHS 539 Query: 526 QVSQLSLP-KLVEQVALNAWKE---ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM--L 579 + + + + +A NA + L L + N+ K+ + LS Sbjct: 540 IIERFARKLGAAQMLAQNAAWTSYDAEAGLIMLSLTDEAKATANKERLDKICQTLSEAYH 599 Query: 580 KGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 G+ T D+ TP+ R+ I EE QA+E + AD Q + + F+A+ +S Sbjct: 600 LGNLRLQTEPWQDDKGWETPVMRRKHIQEEGRQQAQELLEADTTAQKILQTFEAQWLPDS 659 Query: 640 IR 641 + Sbjct: 660 LE 661 >UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina loihiensis RepID=Q5QWS2_IDILO Length = 681 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 281/683 (41%), Positives = 372/683 (54%), Gaps = 44/683 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C EIEQGRFVDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCEEGITATPCGKCSACLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKALSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL ++L++E + + AL LLAR+A GS+RDALSLTDQAIA G G VS +V M Sbjct: 181 DDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAIAQGGGSVSIDSVRRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +L+E+++E + E VM ++ + + ++LVE+ LLH++A+VQ P+ Sbjct: 241 LGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVELQSLLHQLALVQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ L R +P IQ++Y+T+L GR+E YA D R G+EMTLLR L F Sbjct: 301 AANVF--ENSDVLKPLLRRMPAELIQVFYRTVLEGRREQAYAIDARSGLEMTLLRLLCFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P S A P + +T A A P Q A + Sbjct: 359 PAEKGDYNITEPDSSAVDMPESKLTAPAQEVTETEAGSVAEVTPQAGPEPQPEAELSEPM 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + E + + + + A Sbjct: 419 QPSYSEHEEPPEFNYSEPDDDAGFYHNDAPPYHMEEAAKSEPVPEPTADQTAEPTPEPAA 478 Query: 481 T------------------------TPVMQQKEVVATPKALKKALEHEKTPELAAKL--- 513 + + ++P AL E E + + Sbjct: 479 QSSSGVADLLRVREQLAEKKNPDNSNKTLNSQTENSSPVALTVPAEAEPEAQPEHQPESK 538 Query: 514 -------------AAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSS 559 EA E D W+A ++ + + L QV LN+ + D+ + + Sbjct: 539 DELNEELPELNDDIREAAEVDKWSAMIAGMDISGLARQVLLNSELQKLGDDDWLILVAEE 598 Query: 560 QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESII 619 Q+ L N Q + E+L+ L G+T + P+ TPL +Q I E + +A E + Sbjct: 599 QKSLLNESTSQAVRESLAGLLGATARVDFKVG-VPSQPTPLMVQQHINEYRHQRACEILH 657 Query: 620 ADNNIQTLRRFFDAELDEESIRP 642 D +Q L++ F A++DE SI+ Sbjct: 658 GDAGVQDLQQRFQAQIDESSIQA 680 >UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR3_9GAMM Length = 677 Score = 414 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 274/671 (40%), Positives = 369/671 (54%), Gaps = 32/671 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IARLLAK Sbjct: 1 MSYQVLARKWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGRF Sbjct: 61 SLNCEQGVSSKPCGQCASCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKNMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HIL E + + +L +A A+GS+RDALSLTDQAIA G G ++ Q V+AM Sbjct: 181 EHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIAFGHGALAEQEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+LV A+++ + + ++A+++E +++ LL E++ LHR+A+ Q P+ Sbjct: 241 LGTVDLKRVLNLVRALLQKDADGLLAMVSELDEHTPDYQTLLTELMSTLHRVAIAQAVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N + LA+ DIQLYYQ + EL AP R G EMTLLR LAF Sbjct: 301 AISNHKGD-RDAIMALAKAGYAEDIQLYYQIAGKSKGELSLAPSERAGFEMTLLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP-------QQAPTVPLPETTSQVL 413 P +P + T P P + AP V ETTS+ Sbjct: 360 QTPPSSIDTLPPLTTQAPETTQPSAAPVKPAVSTPEPVSIPASEEVAPDVGPSETTSEAA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR----------VQARPVP 463 + + + K +E A + E VQ P P Sbjct: 420 VPSEPVNAAETPVKKTPAESVDAAEVLTQPASQPEPATVPEPVSEPEPEPEITVQEDPHP 479 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH--EKTPELAAKLAAEAIERD 521 + + E + ++ +++ P + E P+ AA+L+ A D Sbjct: 480 AGAVDTTSMLEPVAEQPPIETPTEENLLSEPDSASDPESKVVETEPQTAAELSDVATWPD 539 Query: 522 P---------WAAQVSQLSLPKLVEQV-ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 W + +L L + + + A + W+ + + L + + R + N QQ Sbjct: 540 TDLDADPVFWWQVTLHRLGLSGMTKTLFAHSQWRGYENGQLSLVISPNYRKIMNDSHQQY 599 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L +A++ LT +TP W + + +A + + AD ++TL F Sbjct: 600 LLQAITDWLPDCQSLTYEFGAVD--KTPQLWLDQLVQAANDRAYQHLKADAFVETLINEF 657 Query: 632 DAELDEESIRP 642 EL +ES P Sbjct: 658 KGELIQESAVP 668 >UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 Tax=Candidatus Blochmannia RepID=Q493A4_BLOPB Length = 698 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 277/689 (40%), Positives = 406/689 (58%), Gaps = 48/689 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+D+VGQEH++ A+ + SL +IHHAY+ SGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPKKFSDIVGQEHIIQAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G T T CG C+NC++IE G F+DLIEIDAASRTKVEDTR+ LDNVQY P+RGRF Sbjct: 61 GLNCEQGTTYTMCGQCNNCKDIELGCFIDLIEIDAASRTKVEDTREFLDNVQYMPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKF+L TT+ QKLP TILSRCLQF+LK L++ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPTHVKFILVTTEYQKLPETILSRCLQFYLKPLNI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +I ++E+I E AL+ LA A++GS+RDALSL +QAI G+ +++ ++ M Sbjct: 181 SQIINQLTYIFHKENINIETSALESLAYASKGSMRDALSLAEQAIVLGNNEITNNVINNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 G + + L L+E++++ + +M I G+ W+ + E+L +L +IA+ Q Sbjct: 241 FGISNIEHPLCLIESLIDEDIHNIMHQIENLTVLGVHWDYVFNEILTILQKIAIGQFLSN 300 Query: 298 -SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N I RMR L+ I P ++QLYYQ L+GR+ELPYAP RMG+EMT+LRA Sbjct: 301 SVQKEDNNVTQHINQRMRRLSNRITPENVQLYYQIFLLGRRELPYAPSHRMGIEMTMLRA 360 Query: 357 LAFHPRMPLP------------------EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 LAF P + + + Q Q + Sbjct: 361 LAFRPDVDIANKKNGNGDDNDHILKKSVCSNNNVEINTNDTQHIATDLFQKKNHNQGSKN 420 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 T L +T + +L ++ + TK K S+ ++ R + + LE + + + Sbjct: 421 VLNTEKLKKTNNILLLNFKKSELNSDNTKPKISKSVSSRDTRDITSTILEARSKLLQYKE 480 Query: 459 AR-----------------------PVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPK 495 +++ K + R++ + + Sbjct: 481 RDKLNVIEKKSNLTLESQKKIKDILERFASINTIILKNSSDRFEKINKDLSGYLEFSNNS 540 Query: 496 ALKKALEHEKT--PELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE-SDNAV 552 K+ L P+ ++ +AI + W +Q+ +LSLPKL +++ +N+WKE+ S + + Sbjct: 541 NNKENLHRNHQNMPDFIKEILQKAINNNLWISQIYRLSLPKLAKKLVMNSWKEKISSDEI 600 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 CLH+RS +HLN+ + + ++LS G ++L I +DDN A++TP+E +Y+EK++ Sbjct: 601 CLHVRSDYQHLNSTELRNIIQKSLSNNIGIAIKLHIKKDDNYAIKTPMEHLYTLYKEKIS 660 Query: 613 QARESIIADNNIQTLRRFFDAELDEESIR 641 ++ +D ++ ++ FFDAE+DE I+ Sbjct: 661 LIKKEFSSDPYVKMIKSFFDAEIDENDIQ 689 >UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionaceae RepID=B6EJ42_ALISL Length = 714 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 298/717 (41%), Positives = 394/717 (54%), Gaps = 77/717 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQSHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKF+LATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ + RAL L+A AA+GS+RDALSLTDQAIA G+G V+ VS M Sbjct: 181 DQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSLTDQAIALGNGNVTADIVSMM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M+ IN+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMSCINDLADIGVEWDGLAKEIAAQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ L R +LP AP + GVEM LLR +AF Sbjct: 301 TLDKTQPD-AERIELLSGQLSPQEVQLFYQIALQSRNDLPLAPTEKTGVEMMLLRMVAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP----------QPQSAPQQAPTVPLPETTS 410 P +P + + P Q P P + AP P+ S Sbjct: 360 PVHAQAIEALPIAVPSMEPAAVNVAPQQPAPASRVQQVIASAPNAEVPVAPKPMQPQAVS 419 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 Q + + + + +E P + + ++ + P+ + Sbjct: 420 QTVYSPVSNSQQSSSAPLDSTEAQPPVYDAPPMGESSQSDSAPVQNIPQEPIATPRSGLL 479 Query: 471 AKKEAYRWK--------------------------------------ATTPVMQQKEVVA 492 + R A + Q Sbjct: 480 GVRNQLRSAKNNLSNTTTGTSPKKGSAASDKKKTSSVLERIAEKQHLAPRTQVSQLGTSV 539 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA------------ 540 + + + K + K I + P++V+++ Sbjct: 540 SQEKKPEEPYRWKASQPEVKKVVSDITPTKLKQALEHEKTPEMVQELVDETVKQDTWSAL 599 Query: 541 --------------LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 LN+ EE D+ V LHLRS+Q HL N A + +++ALS ++L Sbjct: 600 AMSLALPKLVQQLVLNSSFEEHDDQVSLHLRSAQSHLINDKAHELVSQALSSALNKEIKL 659 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I +PLE R+ +Y+ KL A +S+ D ++ + + AE+D+ES+RPI Sbjct: 660 NIDISAEGT--SPLELREQMYQTKLQTAYQSLQQDPHVNFFMQRYGAEIDQESVRPI 714 >UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Tax=Actinobacillus minor RepID=C5S1I5_9PAST Length = 698 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 323/696 (46%), Positives = 421/696 (60%), Gaps = 61/696 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI H LE IL E I +E A++ LA+AAEGS+RD+LSLTDQAIA + V+ AVS M Sbjct: 181 TQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSLTDQAIAVTNANVTLSAVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L L+ A+ A+GE+VMA+I A +G++W LL ++ +LH+IAM+QL + Sbjct: 241 LGLIDDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLLNDVAEVLHQIAMLQLVKS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A + LA+ + P DIQ +YQ +L+G+KELP AP++R GVEMT LRALAFH Sbjct: 301 AEQEESA-----IHFLAKQMAPEDIQFFYQVILMGKKELPLAPEQRSGVEMTFLRALAFH 355 Query: 361 PRMPLP-------------------------------EPEVPRQSFAPVAPTAVMTPTQV 389 P+ R + + AV Sbjct: 356 PKRTEAINLNVAPQQTQNSVAPQQIVQQPTRTAQDNIAQLRERLAKESSSTQAVQNNEHF 415 Query: 390 PPQPQSAPQQAPTVPLPETTSQVLA----------ARQQLQRVQGATKAKKSEPAAATRA 439 Q+A +P V P +T AR+QLQ Q + + Sbjct: 416 AKVSQNATAYSPNVNAPTSTETPTQGVSAALVAMQARKQLQETQAQLDQTEKKKPELVIP 475 Query: 440 RP-----------VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQK 488 +P L + P E YRW P ++ + Sbjct: 476 KPINTNKQPANLQERFMNLAVAQQQQTTREKTVTKPVATAKPTNDEDYRWTWLNPELENQ 535 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE- 547 + A P +K+A+ E+TPEL K + + E+D W V++L+L L Q+ALN++ + Sbjct: 536 DESAKPSDIKRAILQERTPELVEKTISLSCEQDKWCKLVNELALGGLSRQLALNSYLSDT 595 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 +N + L L+ + HL+N ++Q LA AL + ++ +TPLE R+AI+ Sbjct: 596 QNNELHLVLKPAMAHLDNLESRQSLATAL---LEKGFTYQLTLGESAENKTPLEIRRAIF 652 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E+ A+ ++ +D + LR+ FDAE+DE +IR + Sbjct: 653 EQLTVDAKNALFSDEKLMLLRQAFDAEIDESTIRAV 688 >UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I98_THICR Length = 696 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 258/697 (37%), Positives = 374/697 (53%), Gaps = 58/697 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ VLARKWRP+ F+++VGQ HV+ AL+N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MTDTVLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCGVC CR I++GRFVDLIE+DAAS+TKVEDTR+LL+NVQYAP +GR+ Sbjct: 61 ALNCEQGITSKPCGVCSTCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYAPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDP KLP+T+LSRCLQF+L L + Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSRCLQFNLMRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +IL +E + E AL ++A++A+GS RD+LS+ DQAIA G G+V AV AM Sbjct: 181 PQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGGGKVQYDAVQAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L+++ A+ + + + +I + A G+++ AL +++ LH+++M+Q+ Sbjct: 241 LGLVDQQFTLNILSALANESADELKEVIQQLALMGVDYTALNGQLIEALHQMSMLQVLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +++L+ + P IQ+ YQ L+ ++++ APD R+G EM+LLR LAF Sbjct: 301 -LTESSLIEVEMLQKLSEQLSPERIQVLYQIALLAKQDMALAPDIRIGFEMSLLRMLAFK 359 Query: 361 ---------PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 PE + RQ A P +P QP +A + P Sbjct: 360 PVFSETMSSMEQTEPEEGMSRQENVKTARPGQNEPAAIPNQPAAADEARTNFEAPSHFEA 419 Query: 412 VLAARQQLQRVQGATKAKKSEP--------------------------------AAATRA 439 A + + Q A ++ +P A Sbjct: 420 PSAPQSSMPETQAAPQSSAPQPSGEMDHLTDLKARLDSTLGKSEAPIEHRENHDAEVPTF 479 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKAP-------AKKEAYRWKATTPVMQQKEVVA 492 + +LE+ AS + A ++A +A P + + + Sbjct: 480 DVPSGQSLEQSASFLTETRQEDDRPVESAAAFQASSHVPVQKAVTEEAMAPAFESPGMES 539 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERD-----PWAAQVSQLSLPKLVEQVALNAWKEE 547 + ++ E E E A + D W A ++QL L + ++A + + Sbjct: 540 VTPSSQEHFEQEPVSEAVVADAPIEMNADTASVTDWIALITQLQLEGMAAELARQSILVK 599 Query: 548 SD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D ++ L + Q H A Q+L E + G + I D TP + A Sbjct: 600 RDAQSLTLSIDPEQVHAKTELALQRLEEQVKAQLGVRL---IFVDYPEDHWTPAKHFAAE 656 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + + A ESI D +Q L + + ++ E SIRPI Sbjct: 657 AKARQGNAAESIRNDAVVQNLIQTLNLKVIESSIRPI 693 >UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q1QXJ7_CHRSD Length = 723 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 277/717 (38%), Positives = 368/717 (51%), Gaps = 77/717 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF ++VGQEHV AL N L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRTFHELVGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G+T+ PCG C+ CREI++GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP +GR+ Sbjct: 61 CLNCRQGVTSVPCGECETCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFTLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L HIL E +A++ +AL LL +AA+GS+RDA+SLTDQAIA G G+V V+AM Sbjct: 181 ERVVGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAFGQGEVRHADVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+L EA+ E + RV+ + A +G ++ +L ++ G+ HR+A+ Q+ P Sbjct: 241 LGTLDHRHLLALAEALAEVDAARVLQEVASLAEQGPDFGGILDDLAGIFHRLAIAQMVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N + LA D+QLYYQ L GR ++ APD R +EMTLLR LAF Sbjct: 301 ALDNGHGD-RDTLLPLAARFTAEDVQLYYQIALQGRGDMESAPDPRTALEMTLLRMLAFR 359 Query: 361 PR--MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP--------------------- 397 P+ P+ +P + A TA P Q +AP Sbjct: 360 PQGVPKPPQTPLPIRGAAEGQATASTPTADAPGQLAAAPSQPSPADTPPPAADAAPAHPP 419 Query: 398 ----QQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASV 453 QAP + A + A + AT+A Sbjct: 420 SRPDTQAPVAEEEHGAAAGADASSASPADEPAAPGTLESESFATQAFDNEPLESAPPDIE 479 Query: 454 TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 + + + +A + A ++ + + L Sbjct: 480 SAVAAPPEPAAPVTEAVPPVADAQATAAEDALEDALEDEAQRQADADGAVDVDDAPPWVL 539 Query: 514 AAEAIERDP----------------------------------------------WAAQV 527 + D W A Sbjct: 540 DDAQMPADEISAPPEPPSAPDAPATEVAEDADAPAPTAQAPAVATPDTGAFDHARWLASF 599 Query: 528 SQLSLPKLVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L L L +A + EE D + L L SQ + +++ +AL+ G L Sbjct: 600 ASLGLGGLTRNLAAHCIVEEDDGDTLTLRLDPSQSAMLADVHVERMTKALAEQ-GVARRL 658 Query: 587 TIVEDDNP-AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + P TP + + + + AQA E++ D +IQ L + F A+L E S+ P Sbjct: 659 HVTVAAIPEGWETPRAQGERLAQARHAQAVEALRRDPHIQMLEQDFGAQLLERSVTP 715 >UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Bacteroidales RepID=C3QNI8_9BACE Length = 621 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 158/637 (24%), Positives = 263/637 (41%), Gaps = 22/637 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ ++E I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L + +E + L N+ +G + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q + QQAP P + + A Sbjct: 363 TTEGDDVSGGRGPKKTIKPVFTQPAAAQQPQVASATQVQQAPVHSSPSSVTTQAANGTTA 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q Q + + PA+ A + + + + + + K Sbjct: 423 QHPQASAAVQPGAPASPGAASSAPSQGAGVAQTAKEERKIPVMKMSSLGVSIKNPQRDQV 482 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + V P+ + + E+D A ++ L + Sbjct: 483 SQNATTTYVPKVQQPEEDFMFNDRDLNYYWQEYAGQLPKEQDALAKRMQMLRPA-----L 537 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVRT 598 N+ + + + + +L + L S V +T+ + Sbjct: 538 LNNS------TTFEVVVDNEFAAKDFTALIPELQDYLRGRLKNSKVMMTVRVSEATETVR 591 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 P+ + + + L+ F EL Sbjct: 592 PVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 620 >UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC05_9GAMM Length = 588 Score = 405 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 256/627 (40%), Positives = 350/627 (55%), Gaps = 41/627 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VGQEHVL AL N L R+HHAYLF+GTRGVGKTSIAR+LAK LNC+ G+++ PCG C Sbjct: 1 MVGQEHVLKALINALDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEPCGQCS 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 C I +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP GRFKVYLIDEVHMLS +SFN Sbjct: 61 ACLSISEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTAGRFKVYLIDEVHMLSTNSFN 120 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP HVKFLLATTDPQKLP TILSRCLQF+LK + E+I L+++L +E I Sbjct: 121 ALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFNLKNMSPERIVVHLQNVLEQEMIT 180 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 +E AL LL R+A+GS+RDALSLTDQAI+ G G++ V +MLGT+D +VEA++ Sbjct: 181 YEEPALWLLGRSADGSMRDALSLTDQAISFGSGKLLEADVRSMLGTIDRSAVYEIVEALI 240 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 NG +V+A +N A ++ + L E+L LLHRIA+ Q P A N ++ ++ Sbjct: 241 AENGAQVLAAVNNMAEHAPDYLSALEELLMLLHRIAIAQAVPDATDNSFGD-GAKIIAMS 299 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAP 377 + D QL+YQ L GR++L APD R G EM LLR LAF Sbjct: 300 ALLTAEDTQLFYQLGLTGRRDLSLAPDLRSGFEMVLLRMLAF------------------ 341 Query: 378 VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAAT 437 P +P P+ + +P E V +Q ++ T S Sbjct: 342 -------KPAGIPQLPERSLTNSPV--SVEAPQPVKKPDAGVQSIKADTPVSFSSKLGPA 392 Query: 438 RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKAL 497 ++ VN+ L+ +VT + P+ A + V A Sbjct: 393 QSSVVNDIQLQVDGAVTKAIGEEPLH-----------AVTVSESVAVPLAAPAPAPVPVA 441 Query: 498 KKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHL 556 + E + + L+ + + D W A +L +V +A + + +DNA+ L L Sbjct: 442 VLVDDTEMSLDEKGPLSLDQLRPDSWNALFERLGFGGVVGNIASHCILVDVTDNAMSLQL 501 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 ++ L + ++ E L++ + V + I + TP + + E+ A Sbjct: 502 DAANATLFSDSYTARIQEHLTVTLNTPVTVKIEV-TPLSAETPALRKNRMQNERREAALL 560 Query: 617 SIIADNNIQTLRRFFDAELDEESIRPI 643 S+ D N+Q L FDA LDE S++P+ Sbjct: 561 SLKNDPNVQVLVSDFDAVLDEASVQPV 587 >UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JMX9_9BACE Length = 623 Score = 404 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 157/640 (24%), Positives = 259/640 (40%), Gaps = 26/640 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS VED R L++ V+ P G++ Sbjct: 63 INCLHPTADGEACNECESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE++ +EHI EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ Q+V Sbjct: 183 NDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGHITYQSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A +E + NE +G + + + + + + Sbjct: 243 LNVLDYEYYFKLTDAFLENRVSDCLLTFNEVLKKGFDGNHFITGLTSHFRDLLVSRDDET 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R + A+ P + + + ++R+ VE+TL++ Sbjct: 303 LQLLEVGASIRDRYQAQAQKCSPQFLYKAMKLCNDCDLNYRVSKNKRLLVELTLIQLAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +P + S+ Q + + P P+ T +V Sbjct: 363 TGDNDVPG------GGQGPTKQTLKPAFNQGQPSSSSSQASNSQPYPQATHEVSGNYGST 416 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q A + + AA + + KA + + R + Sbjct: 417 APKQPAKPSAPNGSAAVQQPAAPTTNVSAAAHPSPIPKANTEKKIPVMKAGSIGISIRRQ 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS---LPKLV 536 A P V T + + E W ++L Sbjct: 477 AVQPQAANNGPVNTAATVPAD------QTYEDYIFNEKNLNYYWREFATRLPKEEAANAA 530 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPA 595 + + + + + + ++ L +++T+ Sbjct: 531 RMMNMQPHLLKDQTTFEVAVDNDMVQKYMSQLAPQIETHLRQQLHNRKIKMTVRVSAANE 590 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + ++ L+ F EL Sbjct: 591 NLRAYSHVERFQMMS--------KKNPSLLKLKEAFGLEL 622 >UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJR0_9GAMM Length = 587 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 260/642 (40%), Positives = 324/642 (50%), Gaps = 72/642 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+QVLARKWRP F D+VGQ HV+ ALAN LS R+HHAYLF+GTRGVGKT+IAR+LA+ Sbjct: 1 MSHQVLARKWRPGRFEDLVGQPHVVRALANALSGDRLHHAYLFAGTRGVGKTTIARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C +C EI +GR +DLIE+DAASRT+V+DTR+LLDNV YAP GRF Sbjct: 61 CLNCETGITATPCGECRSCVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYAPTAGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFNLKPMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E + EP AL L AAEGS+RDALSLTDQAIA G +++ M Sbjct: 181 ALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAYGGDRLTESDACDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L + L++A +G +M + E G +W LL E+ L+HR+A+ QL Sbjct: 241 LGLLPRTRLTGLLDAAFAGDGPGLMQGLQELKGLGPDWSRLLDELAALVHRVAVEQLVRG 300 Query: 301 ALGNDMAAIELRM-RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 G + R RE A I +QL YQ L+ G ++LP+APD +MGVEMTLLR LAF Sbjct: 301 EGGAEDDDAAERWARETAARIDAETLQLTYQILIHGARDLPWAPDAQMGVEMTLLRLLAF 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + Sbjct: 361 -------------------------------------------------RPEGPGEGAVS 371 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 QG T A + A R A R + P Sbjct: 372 VERQGGTPATAPRTGPSADPATARPDATMRSAPPPIPEPPRERAQERVREPDPGSDIGLN 431 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + P + E V +P+ W L + E Sbjct: 432 ESAPRPRDAEPVRSPEPDSGPF--------------------DWHRFAEGLPTGTVRELA 471 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ D +V + + L + +L EAL G +V L IV+ P+ TP Sbjct: 472 LHGELQQLDDESVVIAVAPG--TLYTDRTRTRLKEALETRLGHSVRLEIVDQTQPSQATP 529 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 A E+ A A ++ D +Q L F AEL IR Sbjct: 530 AARLAADAAERQASAETAMREDPVVQALGEAFGAELGTVRIR 571 >UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina baltica OS145 RepID=A3WNZ0_9GAMM Length = 640 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 275/645 (42%), Positives = 367/645 (56%), Gaps = 9/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP F VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C +C EIEQGRFVDLIE+DAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCERGVSARPCGECPSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT++SRCLQF+L+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFNLRALDR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QLE++L E++ H+ +AL LLA++A+GS+RDALSLTDQAIA G G+V ++V M Sbjct: 181 EQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIAQGQGKVQVESVQRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D L++A+ + V +E + + +L E+ ++HRIA++Q PA Sbjct: 241 LGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNELQRVIHRIALIQQIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R +P +QLYY+ ++ G+KE PYA D + VEMTLLR L+F Sbjct: 301 --MMGAEDKTNTTEALLRKLPAEVLQLYYRIVIEGKKEAPYAVDPQSAVEMTLLRLLSFT 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PE + P + +T ++ + A Q + + A Q + Sbjct: 359 FE--NPESGEEALTRPPESNLDTITQSEQAEEAAHAGQHSGDTSIQSEADDTSALEAQQR 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE--AYRW 478 ++ + A A + A E LAS+ + Q EK ++ + Sbjct: 417 DIEAQAAQHRMSRPAEGVAEDNSVAPDEGLASLLNMRQDLSGHQEPEKKNSEIDIETPSE 476 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + P Q + A P + A D WAA V ++ L Q Sbjct: 477 QPHLPSRQPDKQHAEPVQTTPVSLSHIQQRFDSSTRRAADV-DSWAALVDATAVQGLTRQ 535 Query: 539 VALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + LN+ E+ + C+ + Q+ L + EAL + + E + + + Sbjct: 536 LLLNSVLEKVGHQQWCIWVTEEQQSLLSEKTVALAREALCEVLSAQGEYRFLVG-SQQMS 594 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TPL +QAI +L QA+ + D+ L FDA DE SI Sbjct: 595 TPLLIQQAIDHYRLEQAKLWLQNDSGFNELLNSFDAVTDETSISA 639 >UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Tax=Pasteurellaceae RepID=B8F323_HAEPS Length = 670 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 317/676 (46%), Positives = 420/676 (62%), Gaps = 41/676 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGI+A PCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGISADPCGQCANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+AL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ LE IL +E I +E AL LA+AA+GS+RDALSLTDQAIA + ++ VS M Sbjct: 181 SQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIAVSNVNITLPIVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L LV+A+ A+GE+ MA+I A +G++W+ L + LH+IAM+QL Sbjct: 241 LGLIDDHQPLELVQALANADGEKAMAVIQSVAEKGVDWQQLFSDTAETLHQIAMLQLLKH 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + LA+ I P D+Q +YQ +L G+KELP+AP++R GVEMT+LRALAFH Sbjct: 301 AHQEETP-----LHFLAKQISPEDVQFFYQVMLTGKKELPFAPEQRSGVEMTILRALAFH 355 Query: 361 PRMP------------------------LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P+ L E +Q+ A T + Q + S Sbjct: 356 PKNMATTTTVATPTTPVAPVQSPNSISQLRERLAQQQNSAQTVTTQAVNTEQHFAKNLSQ 415 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS---- 452 P +PT E+ S L A Q Q+++ + + + + ++ Sbjct: 416 PTASPTETNTESISPALKAMQARQQLKAKQEQQDEKKKSDLTPIQPPKTVNKKSVQQGLM 475 Query: 453 ----VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 D+ Q A E YRW P ++ +E P +K+A+ E+TPE Sbjct: 476 NLVTAQDQRQQIEETPQKNIASQNDEDYRWTWLNPELENQEEAPKPSEIKQAILQERTPE 535 Query: 509 LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSSQRHLNNRG 567 L K ERD W+ V+ L L + Q+ALN++ E ++N + L L + HLN+ Sbjct: 536 LVKKTIELGCERDKWSRIVNSLKLGGVSRQLALNSYLESHNNNHLLLVLNPTMAHLNSNE 595 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 A Q L ALS + ++ +TPLE R+ I+E+ +A++++ AD ++ L Sbjct: 596 ATQSLYNALSQ---QGFSSEMRIGESDEFQTPLEIRRVIFEQLTQEAKQALQADKKLKLL 652 Query: 628 RRFFDAELDEESIRPI 643 ++ FDA++DE +IR + Sbjct: 653 QQAFDAQMDEATIRAV 668 >UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Bacteroidales RepID=C6ITP2_9BACE Length = 619 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 161/638 (25%), Positives = 269/638 (42%), Gaps = 26/638 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ +E+I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L + +E + L N+ +G + + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSKDAAT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q ++ QQ P + AA + Sbjct: 363 TTEGDDVSGGRGPKQTIKPVFTQPAAAQQPQVASATSAQQTTVHTAPSPATAPSAANTAV 422 Query: 420 QRVQGATKAKKSEP-AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 ++ Q + + + P A+ + V K P + +A + Sbjct: 423 RQPQVSVASGAAAPVNTASAPSQSAGISSISKEERKIPVMKMSSLGVSIKNPQRDQAAQN 482 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A V Q + + E A +L E + A ++ + + V Sbjct: 483 TAKNNVAQVQIQPEEDFIFNDRDLNYYWQEYAGQLPKEQV------AIAKRMQVIRPV-- 534 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR 597 + N+ + + + + +L L S V +T+ + Sbjct: 535 LLNNS------TTFEVVVDNEIAAKDFTALIPELQTYLRGRLKNSKVAMTVRVSEPTETV 588 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + + + L+ F EL Sbjct: 589 RAVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 618 >UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BXI6_DESAD Length = 638 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 181/650 (27%), Positives = 289/650 (44%), Gaps = 24/650 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQTF +V GQE V T L+ + ++ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSTSNLTAKYRPQTFGEVAGQEAVKTILSRAAAQDKVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC CDNCR+I G VD++EIDAAS KV+D R L +++ YAP R+ Sbjct: 61 ALNCKNAPTAEPCNECDNCRQITAGVGVDVVEIDAASHGKVDDARRLKEDIGYAPIEFRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP H F++ATT+ K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHYAFKMLTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ L +ILN E I E A+ L+A+ GS+RD++SL Q +A G ++ + V ++ Sbjct: 181 DELIAHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLLGQVLALGSEKLLEEDVRSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +L++A+ + V + + RG++ + E+ + ++ S Sbjct: 241 LGLAGRDVFFTLMQAIHGRDLVAVGDTVQQVLGRGLDLGFFIRELGNCWRNMFLLNQSGE 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + A+T + I +Q + G++++ + + M +E+ LL Sbjct: 301 RAVPLLGLSSEEAAEFMKWAQTFDRSFIHACWQMTVDGQRKVMTSLEPAMALELLLLNMA 360 Query: 358 AFHPRMPLP---EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + + S A P Q PPQ Q P +T + Sbjct: 361 SLTDLISMERAGALASAAPSPQQAPQAAPAVPNQAPPQTPPPSQPMGQQPGGQTPPWQNS 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 +Q +Q+ RP+ A S+L A + Sbjct: 421 PQQGMQQQVPPQNQGMQPQGMGANGRPMGRTESGSPAGNRSANDMGADDSSLPDAAGLQT 480 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P + + P + P A ++ + + V+ Sbjct: 481 DSDLNSLVPQSENPAPESIPPLERVPEPAPAKPSFPASVSGPRDF-EGFLQYVADSGANG 539 Query: 535 LVEQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + E D + L +S Q + R ++ + +S G VEL I Sbjct: 540 STSGL-SKCKGELIDGKLVLTCANSFHQGQVAGRESRGVVERLVSEYFGPEVELEIQISS 598 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R+ + R+ + + +++ + F A + SI P Sbjct: 599 KGKRRS------------RQEIRDDVESHPDVKRVMDAFGASII--SIDP 634 >UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 Tax=Neisseria RepID=B4RLX5_NEIG2 Length = 736 Score = 395 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 239/702 (34%), Positives = 345/702 (49%), Gaps = 62/702 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+D+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 30 MTYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 89 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PCGVC +C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 90 SLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 149 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 150 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 209 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E IA++P ALQLL RAA GS+RDALSL DQAIA G G+V+ V M Sbjct: 210 QQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+ +V +GE ++A E AA + ++ L E+ LL ++A++Q P+ Sbjct: 270 IGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPS 329 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +D + LA+TI IQLYYQ + G+++L APD G MTLLR LAF Sbjct: 330 ALAHDDPD-SDILHRLAQTISGEQIQLYYQIAVHGKRDLGLAPDEYAGFMMTLLRMLAFA 388 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + T + + P+ + AA Sbjct: 389 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEADAAQTPVQTASAAAMPSEG 448 Query: 421 RVQGATK---------------------------------AKKSEPAAATRARPVNNAAL 447 + G A ++E + A Sbjct: 449 KTAGPVSHQENNDVPPWEDAPDKTETAAGTARTSAKSIQTASEAETPPENQVSKNKAADN 508 Query: 448 ERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTP 507 E AS+++ P+ + + E + +A P + Sbjct: 509 ETEASLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGFPDNDCPPEDGVEIPPPDWA 568 Query: 508 EL-----------------------AAKLAAEAIERDPWAAQVSQLSLP-KLVEQVALNA 543 + + WAA V + + A ++ Sbjct: 569 NVLPADTAGGGTDEEAEAGGIGGNNTPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHS 628 Query: 544 WKEE---SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV-EDDNPAVRTP 599 E + L + + R ++ K+ + L+ G + L D TP Sbjct: 629 AWTEYRSDTGLMVLAMTAEARATADKKRLDKIRDTLAQAYGLQLTLQTEDWRDEAGRETP 688 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + E +A+ + AD Q + + F A+ ES+ Sbjct: 689 AMQDKRVQAEDRQKAQALLEADPAAQKILQAFGAQWQPESLE 730 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 392 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 187/705 (26%), Positives = 286/705 (40%), Gaps = 72/705 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q H+ L N ++ R+ HA SG RG GKT++AR+LAK Sbjct: 1 MSYLVLARKYRPQTFDEVVAQPHITETLKNAINQERVAHALCLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G T PCGVC +C+EI VD+ EID AS VE R+L +NVQYAPA G + Sbjct: 61 AMNCVNGPTPEPCGVCASCKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYAPALGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+PVTILSRC ++ K + + Sbjct: 121 KVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYDFKRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L + E+ E ++L +AR + G +RDALSL DQ +A G+ S + V + Sbjct: 181 DDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYSTGEASFEKVLDI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +L +A+++ + + +++ ARG + + ++ ++L L + +V+ Sbjct: 241 LGVAGRKSLFALAQALLDRDVPACLTAVDQLYARGYDLKQVMADLLDHLRDLTVVKTVRD 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P L + M+E P + L + +P R+ +E+ L+R Sbjct: 301 PGPLLDIPPGEIQAMQEQVANASPAFVNQVLSLLFKEEAAVRLSPQPRLALEVALIRICE 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVM----TPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 P + + + A + P P P PE T+ A Sbjct: 361 ITPAVAIDSLVAALEVLASQPASKDQIINIGPASGPAPALPESGGGSAPPAPEETTASAA 420 Query: 415 ARQQLQRVQGATKAKKSEPAAAT---------------------------------RARP 441 A + +A P Sbjct: 421 EAAPQHEESTPVAASDPQTEPEPQEALAPEPEPEPEPEKEVTPEPEPEPEPPEEKPQAAP 480 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 A +E + + + A E+ + P + ++ Sbjct: 481 EPQAPVESAPPEPEEESIPEQAADSDAYQADDESPYYPEPDPTYAAADSEPIIPDMEPDY 540 Query: 502 EHEKTPELAAKL------------------------AAEAIERDPWAAQVSQLSLPKLVE 537 + + E DPW A + ++ Sbjct: 541 GPPQYETREVQPYVVQEAATPEEPAAPAPEPEEDEPEPPPFEGDPWKAFSKDVQEKSIML 600 Query: 538 QVALN--AWKEESDNAVCLHLRSS---QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + L KE L + + LN Q L L G V+ I E Sbjct: 601 GLTLEKCRLKEYEKGRFVLETDGAPFSRDQLNTPENQTILTGVCKSLFGRKVQFVIEEPS 660 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P+ + E +A + ++ R F ++ E Sbjct: 661 EENRTAPVMNQAEKRRELEQEA----LNHPLVEEAVRIFGGKVVE 701 >UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQ74_ACIBL Length = 632 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 192/644 (29%), Positives = 307/644 (47%), Gaps = 31/644 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ F++V+GQ+HV L N + RI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MSYQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC++ + PCGVCD+C+E++ G+ VD+IEIDAA+ +++ R+L + +Y PAR Sbjct: 61 ALNCQSADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARD 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y++DE H ++ +FNALLKTLEEPP H+ F++ATT+P+ +P TI SRC F A+ Sbjct: 121 RFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I QL I +E I E AL +LA A +GS+RDALS+ DQAIA+ Q+ T V Sbjct: 181 KFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVR 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ D ++ + + E V+ I++ G + + L + +++ Sbjct: 241 GLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRNAMVAKVA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +AL + R+ +A D+ + Q +L +L Y ++R +E+ LL+ Sbjct: 301 GKDSALLQISSDERERVARVAEQFSEEDLARFLQIMLRTHSDLGYKQEQRFHLELGLLKL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + +PL E S AP + V AP A + P P +S+ AA Sbjct: 361 VHAQRMLPLEELLSGSASAAPSSAPRASVAAPVSRPSSPAPSAATSRPSPFESSRTAAAP 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + + A AP A Sbjct: 421 RPSPFEVDRARKNEPKAEADAEITAKTPEFTAPA------------------APTPMSAA 462 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK-- 534 + P +V + A+ P AA A E A +++L Sbjct: 463 PARGYEPQSAPAPMVTSSVGSAVAVAEVAPPPPAAAPAGETNIPAIRDAVLNELETAGQN 522 Query: 535 -LVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKL-AEALSMLKGSTVELTIVED 591 LV + W ++ V + L + L+ +KL A++ G ++ ++V Sbjct: 523 VLVHTLETGVWAANANEITVKVALSPAMIDLSMGPEVKKLVTAAVNKATGRPLKFSMVGG 582 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 +PA R A+ ++A + + ++ F AE+ Sbjct: 583 ADPATLAKPAPRTAVGPSARSRA----MQHPLVNYMQEKFGAEV 622 >UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1K9_SLAHD Length = 807 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 182/615 (29%), Positives = 282/615 (45%), Gaps = 12/615 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L RK+RPQTF DVVGQ HV L N L + HAYLF G RG GKT++ARLLAK Sbjct: 1 MA-EALYRKYRPQTFDDVVGQTHVERTLKNALQQDHVSHAYLFCGPRGTGKTTMARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR 119 L CE G T +P G C+ C+ I +G D+ E+DAASRT V++ R+ ++ VQ+AP RGR Sbjct: 60 ALLCEHGPTPSPDGTCEECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAPTRGR 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+P TILSRC +F L Sbjct: 120 YKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQRFDFHRLS 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+I +L + E + E AL L+AR A+G +RDAL+ +Q IA G G V+ +A Sbjct: 180 NEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAFGAGNVTMDVANA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG+LD + + + + + E G + ++ + + + L+ Sbjct: 240 ALGSLDVNDMSEIAGHIGRRDAAACFTWMAEYVETGADLAQFARDLASYVRDMYVFSLTD 299 Query: 300 AALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+G ++ + ++ E A+ + L L + + R+ E+ L R + Sbjct: 300 GAVGLSSASSSNQQQLAEDAKLYGTDRLAYILDVLGDLNTSLRSSTNPRLSFEIALTRMV 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE-TTSQVLAAR 416 + L + + +AP A Q + A+ Sbjct: 360 RPQSDLTLEALAARIEVLEKALASGQFAAPAGTTPAAAAPVPASVPASQSGYAGQAVPAK 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V ++A+++ A + Q RP+ + + +A Sbjct: 420 PARDEVPAPSRAQEAAARMRAARSQQAAPQPRPQAQPAPQAQPRPMAQPQAQPAPQAQAT 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL- 535 A P +Q + + +LAAKL A + W A V+++ + Sbjct: 480 PQPAVQPQVQARPASQAQPRPQAPAAAAAPADLAAKLTNPAALQRGWQAAVAEVKRERSI 539 Query: 536 --VEQVALNAWKEESDNAVCLHLRSSQRHLNN----RGAQQKLAEALSMLKGSTVELTIV 589 ++ N E +A+ + S N + +A AL G V IV Sbjct: 540 YGALLMSANVVSEVDGSAMRIEFSSENTMAFNMVQKPDVTETIASALGHAFGMQVPFKIV 599 Query: 590 EDDNPAVRTPLEWRQ 604 ++++ A P Sbjct: 600 QNESMAPVAPASPFP 614 >UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY35_DICNV Length = 665 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 226/660 (34%), Positives = 335/660 (50%), Gaps = 27/660 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+TF ++VGQ+H+ AL+ L R+HHAYLF+GTRGVGKTS+AR+ AK L Sbjct: 2 YQVLARKWRPKTFRELVGQQHITQALSYALDHDRLHHAYLFTGTRGVGKTSLARIYAKSL 61 Query: 63 NCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G +A PCG C++C EI+QGRF DLIE+DAASR +++T++LLDN+ YAP +GR+K Sbjct: 62 NCLINGTSAQPCGQCEHCLEIDQGRFPDLIEVDAASRRGIDETKELLDNLPYAPVKGRYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM +R SFNALLKTLEEPP HVKF+LATTD QK+P T+LSRCLQFHLK ++ E Sbjct: 122 VYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPTTVLSRCLQFHLKNINPE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+R L HIL E I +E AL LLA+AA GS+RD LS DQAIA G G V T V+ +L Sbjct: 182 QLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFLDQAIAYGQGVVKTDDVAYLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + Q L+ + E++ V A++ E A ++ +L + L +I + QL Sbjct: 242 GAVPTAQIYRLLTKIAESDARAVRAILTELDAFSPDYMDVLRHVFQGLQQITVAQLQAQQ 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 N I+ + LA+ +P +QL+YQ + + +PY PD R+ +EMT LR +A P Sbjct: 302 NPN---EIDQTLVRLAQQLPVELVQLWYQIISDAWQSMPYQPDMRVALEMTFLRMIALQP 358 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P P + + +AP ++ +P+ L + Sbjct: 359 LLPETTISEKHIIPEPDNDVDLPPWRDDESEMNTAPLESSENDVPDNNDVDLPPWHDDES 418 Query: 422 VQGATKAKKSEPAAATRA-----RPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 T + A P + LE + + VP+ + Sbjct: 419 EMINTAPAEPLENDAPDNNGVDLPPWRDDELEMMNTAPAEASENDVPNDNDADMPPWRDD 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP-------------- 522 + + P L EL + Sbjct: 479 ELEMINTAPLESSENDVPDNNDVDLPPWHNDELEMNTVPLKSSENKSVIQLEQAVNQLQL 538 Query: 523 WAAQVSQLSLPKL-VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK 580 W+ ++ L + + ++ + + ++++ L + S+ N L LS Sbjct: 539 WSQFLNTLPVEDVFLQSLVEQSIPVSFQNDSLQLAVLSAAASWVNEQRLADLTRILSASC 598 Query: 581 GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + ++I DD + T RQ ++ A++ ++ + ++TL F ++ +SI Sbjct: 599 ARKIAVSITFDD--TIATSAMLRQQESDQMHQMAKQKLLQNPVVRTLMTDFHGKIMRDSI 656 >UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX1_HAHCH Length = 735 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 264/733 (36%), Positives = 343/733 (46%), Gaps = 91/733 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP FA++ GQEHVL AL N L+ R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MAYQVLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C CREI +GRFVDLIEIDAASRTKVED R+LLDNVQYAP R R+ Sbjct: 61 CLNCEQGVSAIPCGECGVCREIAEGRFVDLIEIDAASRTKVEDMRELLDNVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I L H+L E++ E AL LARAAEGS+RDA+SLTDQAIA GDG++ + V M Sbjct: 181 QRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSLTDQAIAFGDGKLEAKDVIEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + L+ + + ++A +N A ++ +L + LLHR+A+ Q P Sbjct: 241 LGTIEKHVVIDLLRTIAAQDCAAMLAQVNHMAQFAPDYAYVLQALAELLHRVAVEQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N ++ ELA+T+ D QLYYQ L+GRK+L APD R G EM LLR +AF Sbjct: 301 GVDNSFGDQ-QQVSELAQTLTAEDTQLYYQIALMGRKDLALAPDPRTGFEMALLRMIAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP----------------QSAPQQAPTVP 404 P + + + A + P P+Q P Sbjct: 360 PNIKSARQIQAPSAASSAASADDDKESAQPGPSQTETAVAAQPAPAVEATPEPRQEIAAP 419 Query: 405 LPETTSQVLAARQQLQRVQGATK---AKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 PE QV R + + + + + + + P Sbjct: 420 QPEPPQQVAEKRDTPSPQEPPRQGLSQQGPQKQEPSNQGEAPVIDAAPVTPAQPIERPPP 479 Query: 462 VPSALEKAPAK------------------KEAYRWKATTPVMQQKEVVATPKALKKALEH 503 S E P Y + P K+ Sbjct: 480 GHSEAEPPPVDDYDAYFADDPGPSDADYGFSGYPAETGYPDDGSHAAPVANPQPKEERPQ 539 Query: 504 EKTPE---------LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC- 553 P + S+ VA N+ K+ + Sbjct: 540 AAAPAREPQGREAIAPPPKSVTESVPGLHPGPGEAGSVNTTPPVVAANSVKKSPAGPLTP 599 Query: 554 -------------------LHLRSSQRHLNNRGAQQKLA-----------------EALS 577 L + L R A + + EA Sbjct: 600 PLEGEPTMQGMVWKDAVKRLAISGMTATLAQRCALEAVTPGLVIFTIDREHLDFFNEAQR 659 Query: 578 MLKGSTVE------LTIVEDD-NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 + V + I TPL++ + E QA +I D NIQ + Sbjct: 660 ERLRAAVSEFMGEAVKIEVSAGESKWLTPLQYAERRRAELQQQAETAIRNDPNIQMMAGR 719 Query: 631 FDAELDEESIRPI 643 F A + E SI PI Sbjct: 720 FGAAVIENSIEPI 732 >UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=B0VRL4_ACIBS Length = 682 Score = 387 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 248/684 (36%), Positives = 341/684 (49%), Gaps = 47/684 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL++ L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E IA + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + E+V L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +L++ I D+QLYYQ GR +L A + G EM +LR LAF P Sbjct: 302 LKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MPLP----EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL------------- 405 P EP + T ++ P P + + P Sbjct: 362 APNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPE 421 Query: 406 ----------------------PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 V + V + + P Sbjct: 422 PQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEP 481 Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH 503 + E + + E K + + E VA K Sbjct: 482 ASTAEPIGLFEASNAEFSLAQDTSAYDLVSEPVIEKQSLVQAEIVETVAVVKEPNATDNS 541 Query: 504 EKTPELAAKLAAEAIERD----PWAAQVSQLSLPKLVEQVALNAWKEES-DNAVCLHLRS 558 + P+ KL ++ +E + W L V+++A + H+ Sbjct: 542 QLMPQDILKLPSQTLEGEWTLEKWEFWFRNSQLSPAVQELAQHGVMTGEIGGNTVFHIPQ 601 Query: 559 SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESI 618 ++ QQ L EAL +T + T+ TP + E+ +A E + Sbjct: 602 EYENMLT-QLQQALIEALKQQWPNT-QFTVEYGAV-NTATPYVMQSVRKEKAFHRATELL 658 Query: 619 IADNNIQTLRRFFDAELDEESIRP 642 I++L FD EL ++P Sbjct: 659 QQQPVIKSLIETFDGELQNIQLKP 682 >UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 Tax=Firmicutes RepID=D1BPK5_VEIPT Length = 895 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 158/651 (24%), Positives = 275/651 (42%), Gaps = 33/651 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RK+RPQTF DVVGQ V L + ++ HAYLF+G RG GKTS+A++ A+ Sbjct: 1 MAYIALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T PC C CR I G+ +D++EIDAAS +++ R L ++V++ P GR Sbjct: 61 AINCEHGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ ++NALLKT+EEPP HV F+ ATT+ +KLPVTI+SRC ++ + + Sbjct: 121 KVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L ++ +E + A QL+A A+G LRDALS+ DQ G ++ Q V + Sbjct: 181 DDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + ++A+ +G +V++ +++A A G + ++ ++ + + + +++P Sbjct: 241 IGLVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPD 300 Query: 301 ALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL----- 354 A + + A ++ ++ Y ++ + + R +EM LL Sbjct: 301 ADELKVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAK 360 Query: 355 ----------RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 R A ++ + V PT PQ Sbjct: 361 LGSVDESLEDRVYALESAERSERNDLLNRMAQLEQRGPVAAPTMYGANAFVPPQGGYANS 420 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + V + Q T + P N + P + Sbjct: 421 FVSVDTTVTTQDAPMSSTQNTTIDAVPPSSGMGMTPPPMNGVGMTPPPMGAPGSTPPPMN 480 Query: 465 ALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + AP P + + +A K + +E I Sbjct: 481 GVGMAPPPMGGV---GMAPPPNNGDTDSRKPTRNQAKGRAKKGVSTQAIISEQILSAQEY 537 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN-----------NRGAQQKLA 573 V ++ K ++ N +++ S+ + N + A Sbjct: 538 RNVQS-NVIKYLKDSNRNMTSTVIGQGQLVYVDQSKAVMAFKNTLHLNVMTNEVNLAEAA 596 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI 624 +A + G V + I D V + ++ +A + + Sbjct: 597 DAFTYTLGYAVHVEI-VDALTQVYKDYKKAAGSTTQRQVKASQRPQE-PMV 645 >UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 Tax=Desulfuromonadales RepID=Q39Q40_GEOMG Length = 582 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 180/557 (32%), Positives = 275/557 (49%), Gaps = 8/557 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQTF+D+ GQEHV L N + GRI HA+LF+G RGVGKTS AR+LAK Sbjct: 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G++ PC VC C EI G VD++EID AS T V+D R+L +NV+Y P+R R+ Sbjct: 61 ALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ +L HI+++E IA +L ++AR +GS+RD+LS+ DQ +A QV + V ++ Sbjct: 181 GKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L A+ + V+ ++ G E++ L + +++ Sbjct: 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGD 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + A +R+ A ++P D+Q + LL EL + R+ +EM L++ Sbjct: 301 GTDLLDLSEAELATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMAT 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-LPETTSQVLAARQ 417 P +P+ + + V AP +PT PE T+ R Sbjct: 361 LAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ + A + E A + ++ + R + +P A R Sbjct: 421 AERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGAKPRLGSMLEQGSPLVVSADR 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL-----AAEAIERDPWAAQVSQLSL 532 + P + AL+ A+ + + + + Sbjct: 481 LEIGFPEGAFALASLRDSDSQAALKELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRV 540 Query: 533 PKLVEQVALNAWKEESD 549 K +Q L Sbjct: 541 EKEQQQTVLKQAATSHP 557 >UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMH2_MOOTA Length = 589 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 181/604 (29%), Positives = 276/604 (45%), Gaps = 46/604 (7%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ YQ L R+WRP+TFA+VVGQEH+ L N L GR+ HAYLF G RG GKTS A++LA Sbjct: 1 MAQYQALYRQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + +NC PC C NCR I G +D++E+DAAS +++ R+L++ + P GR Sbjct: 61 RAINCLAPREGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPVEGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHML++ +FNALLKTLEEPP H F+LATT+P+K+ TILSRC +F L Sbjct: 121 YKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVS 238 V+ I +L+ + + EP AL LL+R A G LRDALSL DQ +ASG G V+ V+ Sbjct: 181 VQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASGTRGPVTAGQVA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LGT D L+L +A+ +G V+ L+++A A GIE LL ++L + ++++ Sbjct: 241 VTLGTARLDTLLALTDALATGDGAGVLNLVDKALASGIEPRRLLEDLLDHTRNLLLLKVD 300 Query: 299 PAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + ++ AR + + L G L + R+ +EMTL Sbjct: 301 PGAGSLTGLLPEEVEQVAAQARQFDHHRLLDLMERLQQGGAALRRSNQPRVILEMTLAGF 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P S +A ++ SAP S+ Sbjct: 361 -----------LVAPGPSLEGLARRVAELEARLAALEGSAP------------SRTREKV 397 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + +G A + N+ V + + P Sbjct: 398 ATRNQGEGGRPPVAPGSRADAGGQERGNSGPLEAPGAGSPAGRARVINRSREFPQAAGRD 457 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R P +P A+ A+ ++ W ++ + Sbjct: 458 RAGLAGPETATGLEPGSP---------------ASPGLELAVVQEHWPEVLAAARRESIQ 502 Query: 537 EQ--VALNAWKEESDNAVCLHLRSSQR--HLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 Q + + + L +++ L G +QK+ +AL+ + G +++ I Sbjct: 503 LQAFLREGEPVAIDGDTLTLAVKADFHRGMLEQPGNRQKVEKALAAVFGRPLKVVITSGK 562 Query: 593 NPAV 596 Sbjct: 563 PSPP 566 >UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propionibacterium acnes RepID=Q6ABA1_PROAC Length = 957 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 166/647 (25%), Positives = 270/647 (41%), Gaps = 33/647 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +V+G++HV+ L + R++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 108 LALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALN 167 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +CR++ G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 168 CEQGPTPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVHSRYK 227 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + + + Sbjct: 228 IYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPK 287 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + L + +E I + L L+ RA GS+RD+LS+ DQ + + DG VS + +A+ Sbjct: 288 VLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGHVSYEQAAAL 347 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +V+A + +V A I++ G + ++L + + +V P Sbjct: 348 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLVIVSAVPD 407 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L + R+ ++ + L G + R+ +E+ R Sbjct: 408 ACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAPRLHLELMCSRI 467 Query: 357 ----------------LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 R+ + P + T PQ S PQ Sbjct: 468 LLPGADTDGRGIHARLERLERRIGVSGPVEEVERAERPVTAQPPTRYADTPQQASPPQHW 527 Query: 401 PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQAR 460 P L + + + RP N A + ++ Sbjct: 528 PAENLQNPERRSAPEHHDAPSPGQRPSGRP--RPSRKDYRPGNQLAEQPPSNQHGDDGQM 585 Query: 461 PVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 + P+ + + + Q++ TP A + E+ + R Sbjct: 586 SQGPRQQGGPSTSQRQQPRPQDHQPSQRDRQDTPPAQPQQPSAEQGGRADDAINI-TTLR 644 Query: 521 DPWAAQVSQLSLPKLVEQVALN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEA 575 W + + V + LN E N L + ++ + + L +A Sbjct: 645 REWPQVLEAVKDGGRVAWMVLNQYAQVLEVHGNQATLGFSNIGARENFAAGNYPKVLHDA 704 Query: 576 LSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 + + G + T V + PA P A+E D Sbjct: 705 VVKVLGVDLAFTAVVGEPPAAVRPESHPAEFQSGP--AAQEPPDDDP 749 >UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PSN6_CHIPD Length = 634 Score = 382 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 159/645 (24%), Positives = 271/645 (42%), Gaps = 24/645 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RPQ F+ VVGQ H+ T L N + ++ HA+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE C C +C +G ++ E+DAAS V+D R L++ V++AP G++ Sbjct: 63 INCENLQPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F K + + Sbjct: 123 KIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFKRITI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I ++EHI E AL L+A+ +G +RD+LS D+ ++ G ++ Q Sbjct: 183 QDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGGHLTYQNTLEH 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D +++ +++ + + + +E +G E + L L + M + Sbjct: 243 LNILDYDYFFRVMDTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKV 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L ++ R +++A + P+ + L A ++R+ VEM L++ Sbjct: 303 LHLVEVSGNLKDRYKQMAGKVSPSYLITALHLLNETEINYRMARNKRLHVEMALIKLCFL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L + + P ++ A +A T+ +AA + Sbjct: 363 QQAVTLVSDDQTGEVVKKKLVADGAQPQKLRSSFAQAAPEAKPAAGQAATTTSIAANEAR 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++ + V A Sbjct: 423 LTIETPV------NNTGVPPQTVTQPAQPVQQQPPVSQAPANTQHTSSYNTTTTATAPKP 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV---SQLSLPKLV 536 A P K A + + P A W + Q + +V Sbjct: 477 AQAPTNAPKLTGLAAMKEALASKQQTQPAKAVIPMTAGALSVYWDEFIDRFRQANKMTVV 536 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST-VELTIVEDDNPA 595 + L K +S +C+ R+ + + ++ + + LT+ D++ Sbjct: 537 SNLQLATIKLQSAEEICIVSRNIVQFRFMEEEKLAISAFFKDKFQNPGIVLTLQLDESQQ 596 Query: 596 VR----TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + PL R+ + ++ L+ + ELD Sbjct: 597 TQDIGPAPLSSREQFLKMTEKY--------PLVKELKEKLNMELD 633 >UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 Tax=Pseudomonadaceae RepID=Q48KQ6_PSE14 Length = 737 Score = 381 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 247/539 (45%), Positives = 316/539 (58%), Gaps = 2/539 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IAR++AK Sbjct: 1 MSYQVLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+TPCG C C+EI++GRFVDLIEIDAASRTKVEDTR+LLDNVQYAP+RGRF Sbjct: 61 CLNCETGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP +VKF+LATTDPQKLP TILSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L H+L E++ E AL LL RAA+GS+RDA+SLTDQAIA G+G+V V AM Sbjct: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ A++E + V+ + A +G +W +L E+L +LHR+A+ Q P Sbjct: 241 LGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N R+ LA+ +P D+Q YYQ LIGR++LP APD R G EM LLR LAF Sbjct: 301 GVDNGHGD-RDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P + T P ++ A + Sbjct: 360 PADNYDAPRQPLKPVGISQATVDSRKAVADATPVASVAPAVSTAPVMAAPDPAFEALPPA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T A ++EPAA ++P + PV ++ Sbjct: 420 AAPMPTAAVRAEPAAQPESQPQAQPEPVEEVDLPWNEPKSPVAEKNAESAPDTGTVAEPV 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPE-LAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 PV++ + P+ A+ A E+ A + + + Sbjct: 480 AEPVLETVSEQPDLTPMPTPAPASPVPDAPEAEPAQPVAEQQVTPAMLEAIPDSAYLSM 538 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 94/291 (32%), Gaps = 8/291 (2%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P EV P +P A P A A V + L Sbjct: 440 PQAQPEPVEEVDLPWNEPKSPVAEKNAESAPDTGTVAEPVAEPVLETVSEQPDLTPMPTP 499 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A ++EPA + V A LE + S+ + + Sbjct: 500 APASPVPDAPEAEPAQPVAEQQVTPAMLEAIPDSAYLSMNPDSMSSNSGPMGRDDEPPAD 559 Query: 480 ATTPVMQQKEVVATPKALKKALEHEK------TPELAAKLAAEAIERDPWAAQVSQLSLP 533 A+ L + PE A W +L + Sbjct: 560 DDYVEPDIDIDPASYSYLDELAHESVVELEAVEPEPAPAAKPATGLAADWLEVFPKLPIS 619 Query: 534 KLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + +A N ++ LHL + L N Q++L +AL+ G T+ L+I Sbjct: 620 GMTGSIAANCTLMAVDGDSWLLHLDPAHSALFNSTQQRRLNDALNQYHGRTINLSIEL-I 678 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P TP + + E+ QA SI AD IQ + + F A + E++I+P+ Sbjct: 679 KPEQETPAQAASRLRAERQRQAEASIQADPYIQQMLQQFGAVIREDTIQPV 729 >UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH32_BDEBA Length = 621 Score = 381 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 175/643 (27%), Positives = 286/643 (44%), Gaps = 59/643 (9%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV+ARKWRPQ+F DVVGQ H+ L+N L GR+ HA LF+G RG GKTS AR+LAK Sbjct: 18 SYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKA 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L C PC C +C EI G +D+IEID AS V+ R+L D V + P+ G++K Sbjct: 78 LRCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYK 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP HV F++ATT+ K+P TILSRC +F + + Sbjct: 138 IYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTR 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L+ I + E + + AL ++AR +GS+RD+ SL DQ I +G ++ +V +L Sbjct: 198 SITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEIL 257 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV---QLS 298 G D + A+++ N + V+ +I + AA G E ++L ++ + ++ + Sbjct: 258 GLTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMIRNLLLIKVSEAQ 317 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + E+A+ +P DI + + L G ++P A D R+ +E+TLLR + Sbjct: 318 ASQILEMPDSELQALSEMAQRLPEEDIHMLFDMALKGGSDIPRAQDPRIVLEVTLLRMAS 377 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L Q + P + P L + Sbjct: 378 APKLVDLKTLL----------------------QGGAIPSHSAGGARPYVPPVSLPVKGH 415 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + A +A ++ A+P Sbjct: 416 DRIEESQKVLDGPTGLEAMKAALNKASSAASSLKSNPAPAAKPA---------------- 459 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL-PKLVE 537 P A A + E K+A+ + ++ W V L L Sbjct: 460 ------------ATAPAAPVPAAQPTPVVESKPKIASGSTSKERWVNFVELLRQDDALFA 507 Query: 538 QVALNAWKEESDNAVC-----LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 N + + + + L + + + ++KL + G+ ++ Sbjct: 508 AKVENLLFVKEEGKLISLGVPVKLAFLKDQMADAQVRKKLQGFIDSYWGAGYSFEVLMSR 567 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + +Q + R II + ++ + F ++ Sbjct: 568 DQVGESAQAIQQKKVQMAEEDLRNKIIENPMVKAAQTVFKGQI 610 >UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD56_9FIRM Length = 628 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 173/656 (26%), Positives = 268/656 (40%), Gaps = 48/656 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R WRPQ F +VGQEH+ AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MSYVALYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PC CD+CREI +G D+IEIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+P TI SRC +F + + V Sbjct: 121 KVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ + +I EP AL+L+A A+G +RDA+ L DQ V+ + V + Sbjct: 181 DDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA-NPVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +LVE + + + L+N+ G + +L E+L + + + Q PA Sbjct: 240 LGIAGRDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYMRALLLYQADPA 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ + + I + ++ + ++ E+ L Sbjct: 300 YQEIYLTDTAENLKTVEPLFTRSRILAATARIHEASLDVKRSLRSKIVAEICLYDLCRGE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V V P + ++ S + A Sbjct: 360 GESPAALMSRIETLEGKVTHLMAGGAPAVSPAFEPPREKRSKTQEAAYASPMATAPDMPS 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q +E AA A+ E+ AS Sbjct: 420 VTQKEASFPSAEGPAAIPLEKRQEASFEKQASA--------------------------- 452 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V Q+ + E+ + + + A + W + L + A Sbjct: 453 ---VPQRAGQKMEAEGASFTPPFEEKTDAPRQPSDLAGAQRLWNGVLQGLKQRHKMGFFA 509 Query: 541 ---LNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + + + ++ L + ++ L G E + + Sbjct: 510 YAREATPLDFDGKRLTVGTATQLAKDRLERNDLRDEVLAILKAGTGQNFEFAVEQASEKQ 569 Query: 596 VRTPLEWRQAIYEEKLAQ------------ARESIIADNNIQTLRRFFDAELDEES 639 + + + + +E ++ F L ++ Sbjct: 570 MEAARKTAPRVASRPQHKAAPPAPPKEAPLPKEDDELPETVKRAMMVFGGSLVKDD 625 >UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Tax=Rhodopirellula baltica RepID=Q7UQ66_RHOBA Length = 676 Score = 380 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 174/642 (27%), Positives = 275/642 (42%), Gaps = 13/642 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY V+AR++RP+ F +VGQ+HV AL + R+ HAYLF+G RGVGKTS AR+ AK Sbjct: 36 SYVVVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKA 95 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LN G TA P D + I+ G VD+IEID AS +++ R L NV P+R R+K Sbjct: 96 LNHPDGPTANPDSESDVAQAIDSGEDVDVIEIDGASNRGIDEIRSLRANVGVRPSRSRYK 155 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F ++ + Sbjct: 156 IYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESD 215 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I+ E E AL+LLAR A GS+RD+ SL +Q ++ DG ++ V ML Sbjct: 216 KIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLTADHVHTML 275 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DD + L EAM + + ++ I+EA A G++ L +MLG + V + A Sbjct: 276 GTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVDAGRLAEQMLGYFRDLMAVAVGCEA 335 Query: 302 LGNDM--AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A++ + ELA + + + ++ R+ +E T+++ Sbjct: 336 SLMRYAAASMHGSLGELAGRWGLQTVLAIVGLVDETLVRIRHSVHARVLLEATVIQVCHL 395 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + PT +P +++ A Sbjct: 396 PDLQAISDLTAAASGAGGGKSAGEKKKRVAVASSSPSSAAMPTSAVPSSSTSPAAGSDAK 455 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 RV AA + V +A PA + Sbjct: 456 VRVDSPAAPSGDHRAATSATASVAAGVPSGTP-----PVNSGSTAATSSQPAPQSQAVPS 510 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + A T L + W+ + ++ Sbjct: 511 GGVATAVATPPQSEGAENSAAANESTTSTDGYPLISGDEATSSWSQVLQEMDPMTATLAK 570 Query: 540 ALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 A + + + ++++ LS + G L Sbjct: 571 AAERVDSPEPGVLRMIFPGNSGLAFSRCQMPEHKEEILRTLSRVTGRRATLQFEATAVKK 630 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P+ + + ++ + RE I A+ +Q+ AE+ Sbjct: 631 IE-PVAAAKPKNKNRMQRMRE-IQANPLVQSCVELLGAEIVR 670 >UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGG2_9ACTN Length = 862 Score = 380 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 170/598 (28%), Positives = 258/598 (43%), Gaps = 10/598 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RPQTF DVVGQ H+ + N L R+ HAYLF G RG GKT++ARLLAK L Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALL 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 CE G T P G C+ C I +G D+ E+DAASRT VE+ R+ ++ VQ+AP RGR+K+ Sbjct: 63 CEKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRGRYKI 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDP K+P TI SRC +F L E+ Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L + E + E AL+L A+ A+G +RDAL+ +Q IA G+G+V+ Q +LG Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD + +V + + + E G + ++ + + L+ AL Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTDGAL 302 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +A ++ A P + L EL + + R+ E+ L R Sbjct: 303 EPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARPESD 362 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + L + + ++ + +V + A + Sbjct: 363 LTLASLAARVEELERACAQGARPVDAPAVRVAASMFDSTSVADVPMAASAAADAPSASGL 422 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + A V AS S + + ++ Sbjct: 423 SPSVIAAARAIKGGGAPSSVPVVDTGAPASAASDASGSDASSGAAAVASAERIPAVQSGL 482 Query: 483 PVMQQKEV--VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-LPKLVEQV 539 + + E + + AKL+ A + W A V+++ L + Sbjct: 483 DSSPAPAADSPSASEPKLAFSSAEPSEAVRAKLSNPAALQRGWQAAVAEVKNLRTAYGAL 542 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNN------RGAQQKLAEALSMLKGSTVELTIVED 591 L+A A L + S + + ++ AL+ G V + Sbjct: 543 LLSASVSPVQGASGLAVEFSHENSFAFSAVQKPEVSEMVSAALAHAFGGEVPFEFTQG 600 >UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 Tax=Desulfovibrionales RepID=A1V9U7_DESVV Length = 622 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 171/645 (26%), Positives = 266/645 (41%), Gaps = 48/645 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L ++RPQTFA+V GQE V L+ R+ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC T T PC C+ CR++ QG VD++EID AS ++D + L + + YAP GR+ Sbjct: 61 ALNCATAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +L E + ++P A++L+AR A GS+RD++SL Q +A G+ +++ + Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L L+EA+ + V ++ E RG++ L E++ + M++ + Sbjct: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + A+ P I +Q L G++ + + + Sbjct: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEP------------ 348 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M L + + P + P+ S T + Sbjct: 349 ----AMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGCAATIPTPGTQG 404 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 A + A P + R P P+ + Sbjct: 405 TQGTAPAAGMTPSTAAPATPSDAPSPRVPWDEAPPTPPRSGIPPRPAPRMPEASP----- 459 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLV 536 +T + + H + A + D + + + Sbjct: 460 --------ATGRPASTSSSAGASPSHSDASDTAEHTPSGPRTWDGFLEFCQGRNGQGGRL 511 Query: 537 EQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 V A E D + L SS L + Q LA + G + + Sbjct: 512 ATVLRQATPEHGDGVLRLATMSSVQYERLTDAATQTTLAGLVRDYFGDACRVKVH----- 566 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 P + E +A A +Q L+ A + + + Sbjct: 567 ----PPTRVRRTEAELRKEA----EAHPAVQLLKEEMGACILKCT 603 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 163/588 (27%), Positives = 254/588 (43%), Gaps = 5/588 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L R WRPQTF D+VGQ H++ L N + R+ HAYLF+G RG GKT+ A++LAK Sbjct: 1 MSHIALYRAWRPQTFQDMVGQRHIIQTLQNAIREDRVSHAYLFNGPRGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G PC CD CR I G +D+IEIDAAS +++ RD+ D V+YAP+ R+ Sbjct: 61 AVNCERGPAEEPCNECDACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + + Sbjct: 121 KVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQRFDFRQVSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+ +L I +E I E A+ +AR +EG +RDA+SL +Q A G +++ + Sbjct: 181 EEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGSRITLDGAVDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + DQ +L EA+ + N +M L+ G + + ++ + +++L+P Sbjct: 241 TGGMAADQFYALAEAIRDRNVAAIMPLVEGLTQAGKSADKCMENLIFYFRDLLVLKLAPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + R R +A + TL + ++ +A + E+ L++ Sbjct: 301 GAVTERVVDAERFRGMADAFSSERLFKMIDTLNTYQSDMKHASQPQTLFEVALMKICTIG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP-TVPLPETTSQVLAARQQL 419 + + + + S Sbjct: 361 NESAGGTGSGGGAATSSPPAASAEVQRLRQQVEILERKLEQLIQNGGAAGSGAGDGGAVR 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + + AA V A Q R + + + Sbjct: 421 QPASQSRRPGFGGGGAAVSRSTVKLDPFVAAAGSPGTGQVRMKWNEVLHRVKEARITVHA 480 Query: 480 ATTP-VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A K + E T A + E + +D + + Q Sbjct: 481 WLVDGEPVAATDSTILVAFKNTMHRETTERPAHREIIERVMQDVFGNPFKLATCMLKEWQ 540 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 A + E+ + L Q + EA+ L G + + Sbjct: 541 NAASRSGEQEGETLELQ--PDAIDTGEEQRPQWVEEAVK-LFGEDLVV 585 >UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 Tax=Roseiflexus RepID=A7NLI5_ROSCS Length = 644 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 194/649 (29%), Positives = 301/649 (46%), Gaps = 25/649 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L R++R QTF +++GQEHV+ L N ++ GR+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MTVQALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCGVC++CR I +GR VD+IE+DAAS T VED R++++ VQ+ PA R Sbjct: 61 AVNCTAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAVART 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+ K+P TILSRC +F V Sbjct: 121 KVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I +E + EP A + +ARAA GS+RDALS+ DQ +A G G VS + V + Sbjct: 181 ASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAYGGGTVSLEQVRNL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + +LV+A++ A+ + ++ + AA G + +++ L + ++ Sbjct: 241 LGASEMQEVTTLVDALIAADLPGALRVVADVAAAGADLRQFTRDLVERLRALMLICAGAD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +L + ++ ART+ D+ + + +L + ++ +E+ ++ A+ Sbjct: 301 RSLLDVAEEEAAQIERQARTVSLGDLMRWVKLFSELDYQLRISSYGQLPLELAVIEAVIA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + P + QPQ AP Q T P + T + Sbjct: 361 SAPAATAAQSTVPATPPRPSARPTTAPARDAAQPQRAPAQPTTAPAHDRTPPQPPPARAA 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + P A R + A A +AP A + Sbjct: 421 PAHNAEPPQRDLAPPATVPVRDDMPPVPTIRRAGATGTAAASPVDAAREAPGD--APQAS 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPEL-------AAKLAAEAIERDPWAAQVSQLSL 532 A P + + ++A + E A A W+A V + + Sbjct: 479 ARQPDSTGDPFIRHQEQTRRASNPGISTESGEGVAAANADAVALERIEGIWSAVVRDVRV 538 Query: 533 PKLVEQVALNA---WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELT 587 Q LN+ + DN + L + S + +Q + E LS G+ + Sbjct: 539 HNKTLQALLNSGARPVDVKDNILVLEVPSEWLMNQIEKPAMRQIVEEVLSKHMGARFAIR 598 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + P R+ I + D ++ FDA++ Sbjct: 599 CAV-ETQRRENPGALREQIRASR---------KDPLVRAALNIFDADII 637 >UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 Tax=Vibrio RepID=Q7MIV2_VIBVY Length = 730 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 295/731 (40%), Positives = 373/731 (51%), Gaps = 89/731 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+ F +VVGQ HVLTAL N L R+HHAYLFSGTRGVGKTSI RL AK Sbjct: 1 MSYLALARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCG CD CREIE+GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 ALNCEKGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+ IL +E + + RAL ++A AA+GS+RDALSLTDQAIA G+GQ+ T VS M Sbjct: 181 DAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNGQIETDLVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D DQA+ L+EA+ + M I + A G EW+ LL ++ LHRIAM QL P+ Sbjct: 241 LGTIDTDQAIHLLEAISSKQPQVAMDKIQQLAQNGAEWDGLLQQLATQLHRIAMYQLLPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L ++ L+R + P D+QL+YQ L GR +L AP+ R+G+EM +LR +AF Sbjct: 301 SLDKAQPD-AEKIELLSRALSPQDVQLFYQIALKGRDDLSLAPNGRIGMEMIVLRMMAFR 359 Query: 361 PRMPLPEPEVPRQ-------------------SFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 P + Q S A AP P+ P PQ Sbjct: 360 PADVSQANIISAQGANLASAPAAQSAAPQVSTSPAQTAPAMSAKPSSERVAPAERPQAVS 419 Query: 402 TVPL------PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 P +S Q Q P E A++ Sbjct: 420 HAPSRLASSMNAPSSVAPQPVQTEMPPQYDAPPMDYADYPPMDDMPPMGYGYEDAAALQP 479 Query: 456 RVQARPVPSALEKAPAK-----------------------KEAYRWKATTPVMQQKEVVA 492 Q P + +PA K++ A + + Sbjct: 480 EPQPAPQQAPERASPAPGGLTGLRHQLRSQRQGLAQNGGSKKSKAASAEKESVLDRVAQK 539 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAV 552 A + + P E + P V S ++ E++ Sbjct: 540 QATAAQVSPRQSLAPSEPEVKEDEPYQWRPSQPVVQSKSKELTPTEIKRALEHEKTPEMA 599 Query: 553 CLHLRSSQRHLNNRGAQQKLAE-------ALSMLK---GSTVELTIV------------- 589 + S +L AL+ GST+ LT+ Sbjct: 600 EKLVAESLEQSEWAKLITQLETAKLVEQLALNSAFNKEGSTIALTLRSHQQHLNTDKAQK 659 Query: 590 -----------------EDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 + TPLE R+ +Y++KL QA S+ D ++Q + R F Sbjct: 660 ELLSALNETLGETCHLSVEVGGQGETPLELRERLYQQKLQQAFTSLENDTHVQFILRRFS 719 Query: 633 AELDEESIRPI 643 AELD +S+RP+ Sbjct: 720 AELDRDSVRPV 730 >UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XQ9_COLP3 Length = 715 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 267/716 (37%), Positives = 370/716 (51%), Gaps = 76/716 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++GQEHV+ LAN LS R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT PCG CD C +I+QGRFVDL+EIDAAS+TKV+DTR++LDNVQYAP+RGRF Sbjct: 61 SLNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF+LATTDPQKLP+T+LSRCLQFHLKAL V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L IL+ E ++HE L LLA+AA GS+RD+LSLTDQAIA G G ++ + M Sbjct: 181 KQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + LV +++ + + +M L E A+ + L E++ L H+IA++Q+ Sbjct: 241 LGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAELIQLFHQIALMQIVEQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + L ++ ++ + D+QLYYQ L GRK+LPYA D + +MTLLR AF Sbjct: 301 PFDLPADLLALL-KKFSQAMSAEDVQLYYQISLNGRKDLPYAFDEQAAFDMTLLRLFAFK 359 Query: 361 PRM---------------------PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 P ++ + A A T+ + + Sbjct: 360 PMQKSQLTNESTIDNIEQNTAISFDDDNLSKTTETLSNNADIAKAAVTEAVVESFAEVDI 419 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + + T Q Q L Q A + K+SE + + + + E A V Sbjct: 420 SDSAAATDNTQQTELNEQMLAIEQQADELKQSENNSLNQTPAQHVVSQEVKAPQQVPVVE 479 Query: 460 RPVPSALEKAPAKK------------------------------------------EAYR 477 + R Sbjct: 480 SYKEKQNTAPIVPNEQVGQLSIHSPVGSVLATRNMLRSRKKELEKQTKKSSDATLRQPNR 539 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER---------DPWAAQVS 528 + Q + PE ++I+ D WA + Sbjct: 540 ADNSKNKTQDSVNATVKPQVVSTESLVIAPEPDLPFHQDSIDPAKVTKANQVDKWAHMID 599 Query: 529 QLSLPKLVEQVALNAWKEE--SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L + Q+A++A E +D+ + L L + RHL+ A Q L A+ + + Sbjct: 600 SMQLTARIRQLAIHATISEKSTDDNLILKLDQATRHLSTEIAHQHLQSAICEFLARQITV 659 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T+ + P + + I +++L A+ + D + L+ F A L+EESI P Sbjct: 660 TLDIVEETVAD-PYQIQGQINDKRLEYAKTLLKEDAVVIALQETFQASLNEESISP 714 >UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetella RepID=A9HZ16_BORPD Length = 736 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 325/709 (45%), Gaps = 70/709 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARKWRP++F +VGQ+HV+ AL + L R+HHA+LF+GTRGVGKT+++R+LAK Sbjct: 28 MTYLVLARKWRPRSFDTLVGQDHVVRALTHALDSQRLHHAWLFTGTRGVGKTTLSRILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C C EI+ GRFVD +E+DAAS VE+ LL+ YAP GR+ Sbjct: 88 SLNCETGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 148 KVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ +L +E +A E AL+L+A+AA GS+RDALSLTDQAIA G ++ AV M Sbjct: 208 DAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSLTDQAIAYSAGNLTEDAVRGM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+EA+ + V+A+ +E + RG+ + L ++ LL R+A+ Q P Sbjct: 268 LGTIDQRHLVRLLEALPAGDATGVLAVADELSTRGLSYAGALADLAVLLSRVAIEQRVPG 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + + LA + P +QL+Y + R EL APD G M LR LA + Sbjct: 328 ATPADDP-LAADISRLAGVLHPDAVQLFYSVAVHSRGELSLAPDEYAGFVMACLRMLALN 386 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P T +AP + T + Sbjct: 387 GQAGPATALQAPAAATPRPEAVAATAASPAAPAAAAPVASATAAPVAQAAAAAPPPPAAV 446 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY---- 476 + + + + A A N A + + + + A Sbjct: 447 QPRAGAASGAAPAAPAVPVAQTANPAPQAQGAAPAAPVSSAPAAQPAAADTPPWEDLPAT 506 Query: 477 ------------------------------------RWKATTPVMQQKEVV--------- 491 A E Sbjct: 507 PAAAEPAAAAKAPPAAALAVTPPAAQAKAPPPDADGEPPAWVDEDIPDEAQGGYVPAAEF 566 Query: 492 -ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL---------------SLPKL 535 A P + L + A +A +L + L Sbjct: 567 TADPDDEFETLATGASAAELAPVARPQPAPRRARQAAPRLDSMSAADWPGLAARLPVTGL 626 Query: 536 VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 ++A + W +AV L + + + L ++ +L L G + L I Sbjct: 627 AAELARQSEWAGVHGDAVVLRV--AVKTLAESESRVRLQTVLCEHFGQGLRLEIEVGATG 684 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 T Q + A ++ AD +Q L F + S+R + Sbjct: 685 DG-TAHAVAQIERAARQQAAEHAVAADPFVQALTTDFGGRVIPGSVRAV 732 >UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAH1_DESAH Length = 590 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 177/648 (27%), Positives = 270/648 (41%), Gaps = 78/648 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+VLA K+RPQTF +VVGQ HV T L N + GR+ HA L +G RG GKT+IAR+LAK Sbjct: 1 MSYRVLALKYRPQTFDEVVGQPHVTTTLKNAILSGRVPHAILLTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCETG T TPC +C C I G VD+ EID AS V+ R+L +NV Y P+ +F Sbjct: 61 AMNCETGPTPTPCNICKTCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYMPSSSKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP+HV F+ ATT+ K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQRHDLGRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---------ASGDGQ 231 QI L + E + + LLA A+GS+RD+LSL D+ + SG Sbjct: 181 AQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRILGSQAQTSEQTSGPRA 240 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + LG +D L +A+++ G ++ L++ G++ + ++ Sbjct: 241 IDDDKILGTLGIIDKTLVFDLADAIIQNRGADIIDLVDRIHTLGLDLKRFYASLIRHFRN 300 Query: 292 IAMVQLSPAALG--NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +A+V++S + RM L + + + TLL+ + + R V Sbjct: 301 LAVVKVSSNDKNTCDISDHDRQRMAALTAPLSQSFLNQILNTLLVDESLVKLSSHTRTAV 360 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 EM LL+ + P + + A +P P PE Sbjct: 361 EMVLLKLVQIRPGIEIDLMIKRLDDLARRFDNPDFQALPQEERPVCPP--------PEPR 412 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + +P +P + V + P P A Sbjct: 413 KAPTSMDPHPISDDNGESVPAPQPGTTPSYKPTDR----------INVVSPPTPEPRTIA 462 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 P + A RW + A+ K L+ ++ +L A +R Sbjct: 463 PPEDPAGRWNPFLKALADSLPFASAILSKGRLQKISNTDIVVELNGTAFDRGRI------ 516 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + ++ G + LT++ Sbjct: 517 ------------------------------------ESKRGEIETVCHDYFGKPLHLTLI 540 Query: 590 EDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 D P E A + R+ I+ + + F+ + + Sbjct: 541 GDCAPKEYGNDEKSPA-------KLRQEILNHPLVADAIKRFNGTVVD 581 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 174/639 (27%), Positives = 274/639 (42%), Gaps = 59/639 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY V+ARKWRPQTF +VVGQ HV L N + RI H+YLF+G RGVGKTSIAR+LAK Sbjct: 1 MSYLVIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T TPC VC NC EI QG VD++EID AS ++ R+L + V+Y PA+ R+ Sbjct: 61 ALNCETGVTPTPCNVCSNCTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYRPAKSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPEHV F+ ATT+P K+P TILSRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRFDFRRIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L HI +E +A L +AR A+GS+RDA SL +Q ++ +S + V + Sbjct: 181 HMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSRDGLSDEEVLDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A++E + + ++ + RG++ ++ + +V Sbjct: 241 LGVIDRRSIHRTGTAVLEGDVRTCLDVVEDIYRRGMDIRRFCRQLCDYFRNLLVVAFGEG 300 Query: 301 A--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + E A P + LY+QT+L +E+ + R+ A Sbjct: 301 DSRRLDLPSDEKQLLAEAAGKTTPESLYLYFQTVLKSEEEIRRSTIPRI----------A 350 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + +S V + + V ++ A Sbjct: 351 LEMLLLRLARLPRLESLQGVLDKISALEQGLKGATTGGGGSSAAVRDTRPPAREAARAAP 410 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + ++A R + + A+ + + P E P + + RW Sbjct: 411 PPMREPPPPGTGASHSSAGTGRDAPDPIVPEPATGGETIPDLPRIEG-EAVPLEDLSGRW 469 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A ++ KE + K + + + ++ E+ Sbjct: 470 PAFLKWLELKEPILAAKLARSRIGSAAADSVELEVVEVFEEQ------------------ 511 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 L ++ +A TI + R Sbjct: 512 ------------------------LREPQTVARIGDAAEAFFRRRCAWTIRKKPEGTGRG 547 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + ++ ++ + EL + Sbjct: 548 DTQREKKKKA----LSKRLVMEHPVVLQALEILGGELVD 582 >UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 Tax=Bacteria RepID=D2QBB5_9SPHI Length = 664 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 163/669 (24%), Positives = 264/669 (39%), Gaps = 42/669 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQEH+ T L N + + A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQEHITTTLKNAIKTNHLASAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C++C Q ++ E+DAAS VED R+L+D V+Y P G++ Sbjct: 63 INCQNLTAEGEACDACESCVSFNQNASFNIHELDAASNNSVEDIRNLIDQVRYPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + Sbjct: 123 KIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQIFDFNRIQP 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVSTQAVSA 239 + I + L I +E I E AL L+A+ A+G LRDALS+ D + D + + V Sbjct: 183 QHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAADRIIRYKEVLD 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D L + ++ + + ++E +G + +V + + + + + Sbjct: 243 NLHILDYDYYFKLTDLLLAGKLPQSLLTVDEILRKGFDGHQFIVGLCRHFRDLLVCKDAA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + + A P + + A D+R+ E+ L++ Sbjct: 303 TVQLLQVTENVRKQYLDQAMRAPMSFLLSALSLGGQCDMSYKQAKDQRLHTELWLMKLAN 362 Query: 359 FHPRMPLPEPEV----------PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + + P + P Q + AP V Sbjct: 363 LRNLLNWDAMPELPLPQNGAHSTERFTTPESGDEKKNGEHQPSQSRQAPTSPQLVESHPI 422 Query: 409 TSQVLAARQQLQRVQGATKAKKS------------------EPAAATRARPVNNAALERL 450 TS+ + Q A++ + + A AL Sbjct: 423 TSEPVNGYQPANGAAAASQPRSNGYAVASAGTLASSPSVAPSSAGTASVTTPTRPALVAD 482 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A +T + A + + P + P Sbjct: 483 AVMTQPETTGRPEVRPKPVIAPPQRPATSRLRSTVPLTTGPVQPATEAVSDVISTAPTRP 542 Query: 511 AKLAAEAIERDPWAAQ--VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGA 568 K +D W A + Q EQ+ LN + + + L ++ + Sbjct: 543 DKAFTFEDLQDVWRAFSKIRQQQNDSASEQLILNREIVLNGTTIHITLDNTLQVGYLTEV 602 Query: 569 QQKLAEALSMLKGS-TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + +L L + ++L T E ++ IY + + + L Sbjct: 603 KPELLGYLRAELQNSQIQLEHTV-------TVQEVKKMIYSS-QDKYNYLAEKNPALHEL 654 Query: 628 RRFFDAELD 636 R+ + E+D Sbjct: 655 RKVLNLEVD 663 >UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A300_NATTJ Length = 589 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 157/595 (26%), Positives = 286/595 (48%), Gaps = 18/595 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ L R+WRP+ F D+VGQEHV+T L N +S RI HAYLFSG RG GKTS+A++ AK Sbjct: 1 MDYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG C C E ++G F+D++EIDAAS +++ R++ D+V Y+P+ G + Sbjct: 61 ALNCDHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPP++V F+LATT+P KLP+T+LSRC +F L Sbjct: 121 KVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVS 238 +I QL+++++ ++++ +L ++A+ ++G +RDALSL DQ+++ Q+ V Sbjct: 181 SKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + GT+ +D L+ A+ E + +++ ++ + + G ++ L +++ L + + +L Sbjct: 241 EVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKLK 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ +++L + ++ L ++ + ++ +RR+ VEM R + Sbjct: 301 GPSDQLLWGSV-DSVKKLHKYFTKDELISMIDFLSEKQQAMKWSQNRRLIVEMAFYRIIN 359 Query: 359 FHPRMPLPE--PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + E + +Q + Q + L + +S Sbjct: 360 KYNTSFEAEYKEKETKQKNNEETNDKSLKVQQTTSIESVESENKENAKLQDQSSLPKQTD 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + ++K + + + ++ A+V + + + V + K + Sbjct: 420 DQSNKNNDSSKLSREDSDIQQSETKKDKMTEQQEATVQNDLNLKIVTEQWDAVLEKLKQR 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE-AIERDPWAAQVSQLSLPKL 535 + A V + K V L + E + + + + + Sbjct: 480 KVTAHALVFEGKPVDVKENTLYLGFKKLHKLHKERVEQKEKGLLEEVLSEFFGDIKVK-- 537 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ--KLAEALSMLKGSTVELTI 588 E + + + H N ++ L G ++ I Sbjct: 538 -------CIIVEETDLSKQNTKQGNDHKGNSQNEEMDDLTGIAKQKFG-PDKVEI 584 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 212/381 (55%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFAPVAPTAV 383 + + Sbjct: 362 YDMMSLLARVEQIEDKLEKGQ 382 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 212/381 (55%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFAPVAPTAV 383 + + Sbjct: 362 YDMMSLLARVEQIEDKLEKGQ 382 >UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Tax=Bacteria RepID=B4RU47_ALTMD Length = 930 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 246/614 (40%), Positives = 341/614 (55%), Gaps = 12/614 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV++A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G A PCG C+ C+EIEQG +VDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 SLNCEEGQGANPCGQCNTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKAMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL +E +A E AL LLARAA+GS+RDALSLTDQAIA G QV V+ M Sbjct: 181 EQIVGQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIAQGGNQVMASVVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ A+V + V+ L+N+ A + +++ + E+ LLH+IA+ Q P Sbjct: 241 LGLMDKNQLLKVIHAVVNKSPAEVLQLVNDIAEQAPDYDNVHSELASLLHQIALTQWVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + + +LA+TI +QL YQ L GRK+LP+A D + EMTL+R +AF Sbjct: 301 ACKLETTSAKA-IFQLAKTISAEQVQLLYQIALQGRKDLPFAADGKSAFEMTLMRMMAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ E ++ V + + Q+ P + T + Sbjct: 360 PNAPIAETVDEIENGRSEHNLPVNHASPSGGPGNVSKQEEPPLSETSAT---------ID 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + +A+ + + P + A + A + + Sbjct: 411 QGEAPIEAQPEHEPTSPKTPPQSPIADASTDLPSSAPAETVANEEEPTAVSNTQTNTAAE 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T + A+ ++ + + A A+ + P A + + L ++ Sbjct: 471 TDIAFEANLSSASASEAQEPQSNASVEDEEASPVAQYFDEPPLDAYMDDMP--PLQDESG 528 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + S++ L + L + L K + N ++ Sbjct: 529 HYELDTPESERIVEPSPSAEEQLTSTADMLALRQKLKQKKAQDADAKSNSAANAKTQSAS 588 Query: 601 EWRQAIYEEKLAQA 614 E + K A Sbjct: 589 EIQARFTRSKTDSA 602 Score = 97.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 89/284 (31%), Gaps = 4/284 (1%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + A T + S + L ++ Sbjct: 648 PESEQSQDSITDHQSANTLNDGSDTQLLGGSEQASTNADFADNNDSGHDAFALDDFEEDM 707 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR--W 478 P P + + PVP A E + Y Sbjct: 708 PFSNDESDANYNPNPHVEDAPPWDTGKSVQDGHSVEPSLTPVPRANELESKEHGFYERGE 767 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + + + A + D W+ V Q+ + L++Q Sbjct: 768 NAGERSFTRDALDFDTPLSTTYEGSLQAYLSDGSKLTHASQIDDWSNLVEQMPVAGLLKQ 827 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + L+A + N V L + SQ HL A+++L +A+ G VE++I + + T Sbjct: 828 LVLHAAFSRNGNHVSLEIHHSQTHLLKDSAKKQLVDAIHHGLGENVEVSITLGEPSS--T 885 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 P +Q I+ + A A I D IQ L FD + ++++ Sbjct: 886 PFALQQEIHAMRHAHAHSVIKTDETIQALLSTFDGSVLTDTVKA 929 >UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfovibrio RepID=B8DQU3_DESVM Length = 688 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 178/697 (25%), Positives = 273/697 (39%), Gaps = 69/697 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RPQTFA+V GQE V L+ + R+ AYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSNAPLTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE T PC C+ CR++ G VD++EID AS +ED R L + + YAP GR+ Sbjct: 61 ALNCEKAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F K L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E +P A++L+AR A GS+RD++SL Q +A G +++ + + Sbjct: 181 NELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +++A+ + V A++ + +G++ L E+ + M++ + Sbjct: 241 LGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGE 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD------------- 344 A + + E A T I +Q L G++ + + + Sbjct: 301 AALPALDLPEEEARQWLEWAPKFEITHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360 Query: 345 --RRMG-VEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 R+ +E A V P + + Q Sbjct: 361 MLPRLVSLEQLSRGGGAGPAGGRGMPGGVGGVGGGPAGGSGMPGGGAGGHGSMPPRQGGY 420 Query: 402 TVPLPET--TSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 ++ + Q Q Q + +A+ + + AA + + Sbjct: 421 GGYGAQSGQSGQPGQFGQSGQSGESFPQAQPPQGRYPGPGQVRPQAASSASSMSSSSGVP 480 Query: 460 RPVPSALEK---------------------------APAKKEAYRWKATTPVMQQKEVVA 492 A A Sbjct: 481 GAPGMQPAGGFPRPERAAPAAAPAPSRGGSDTSLPWDDVPYPAPGGAAFGDAAIGGTSSV 540 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS----QLSLPKLVEQVALNAWKEES 548 A + L A A E W V + + A + Sbjct: 541 PGAPDSVASASDTPDTLGAPDAPAPHEDGTWVGFVQYCVERNGEGGSSLSMLRQAQGHCA 600 Query: 549 DNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D + + RSS L+ G + L G+ V + + ++TP E R Sbjct: 601 DGRLTVSTRSSTLYNQLSVPGNEALLVARARAYFGTDVRVEV-LPPTTRIKTPSELRAEA 659 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + LR F A + S RP+ Sbjct: 660 ------------ERHPAVSLLREQFGATML--SCRPL 682 >UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPF5_9PLAN Length = 618 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 179/647 (27%), Positives = 289/647 (44%), Gaps = 59/647 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ+F ++VGQ V AL N + GR+ HAYLF+G RGVGKTS AR+LAK L Sbjct: 18 YVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKAL 77 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ G +ATPC CD CR + G VD++EID AS +E+ R L NV P+R RFK+ Sbjct: 78 NCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIRPSRARFKI 137 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHM ++ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F + +++ Sbjct: 138 YIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDE 197 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I+ E + EP AL+LLAR A GS+RD+ SL +Q +A G +++ V+ MLG Sbjct: 198 IVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVNQMLG 257 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +Q ++ A+ + V+A ++A RGI+ L+ ++LG + + + Sbjct: 258 AAGSEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMMTLAVGAGPT 317 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ +A++ ++ Q L + + R+ EM L+R Sbjct: 318 LLQTVLPTDAEKIEAVAKSYGLANVMAAVQILDDALVRMQRSAHARILAEMALVRVCQLE 377 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + +S P+ + P + P +T Q A ++ + Sbjct: 378 DLQSVADLVETIRSGKPLPARPAIQIAAAPQPSAAPQLPPQAAPQAMSTVQTDVAAERTE 437 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ S P V + E + Sbjct: 438 SRVNSSDPASSGPVRQASPSEVTSYVEEPDPELGLSEP---------------------- 475 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P ++ ++ W ++ +S Sbjct: 476 --------------------------PRTNGIKLTDSTAKNIWEGILTDMSDLVGEYARP 509 Query: 541 LNAWKEESDNAVCLHLRSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVE-DDNPA 595 N + + ++ L A+ +L L+ G+ V L +D PA Sbjct: 510 YKTVATSGPNRLVVSFSAAYNSQVEFLRRPAAKTRLEGMLTEAVGNPVTLEFKVLNDVPA 569 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +T + Q + + +Q F AE+ S+R Sbjct: 570 AKT--QEPPKRSAPSSGQMIRKVQQNQLVQQAIEMFGAEV--TSVRA 612 >UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPQ1_9PAST Length = 741 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 256/622 (41%), Positives = 343/622 (55%), Gaps = 15/622 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQ H+L AL+NGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQSHILIALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCVNGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI LE IL +E I + AL+ LA+AA+GS+RD+LSL DQAIA +G ++ V+ M Sbjct: 181 TQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAMSNGNITLNVVNEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+QA+ ++ + + NGE +M +I A +G +W+ L ++ LH+IA+ QL P Sbjct: 241 LGLLDDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDWDLFLRDIAEKLHQIAVKQLLPK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ LA I P D+Q +YQ ++ GRKEL ++P R+GVEMTLLRALAFH Sbjct: 301 DRL----DESNQLDFLATLITPDDLQFFYQVIVAGRKELAFSPTPRIGVEMTLLRALAFH 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P++ Q + V+ T P + L T A Q Sbjct: 357 PKLINSNIVESTQPQSSVSSVNNQTAYVEMPVLSQNIKSQYASNLNTRTVPKTAQNTSQQ 416 Query: 421 RVQGATKAKK-SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A + V + + + + + Sbjct: 417 IPSSNVVPNNMPAVDAQRSYSQPITLKNTVESDSEYSVALEALAELDKLDNTSLSSLQKE 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + + + E P + K + +++ L + Sbjct: 477 KKKSDVVSLQKTIDRVTEETSPEMTALPVIETKPFEQKSFTQKQPSKL--LKSSTQPRMI 534 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI---VEDDNPAV 596 N+ ++ + +R S ++AE T Sbjct: 535 VSNSIDISEES---VEVRQSAVENEIEIDSDEVAE--GENLAETYRWEWSNPELAKMQDG 589 Query: 597 RTPLEWRQAIYEEKLAQARESI 618 TP E +Q++ ++ + RE + Sbjct: 590 PTPSELKQSLEKDITPELREKV 611 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 11/326 (3%) Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPV 378 +P D Q Y + + + + + +E + + + E + + Sbjct: 426 NMPAVDAQRSYSQPITLKNTVESDSEYSVALEALAELDKLDNTSLSSLQKEKKKSDVVSL 485 Query: 379 APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 T + P+ + P ++ +Q ++ Q S + Sbjct: 486 QKTIDRVTEETSPEMTALPVIETKPFEQKSFTQKQPSKLLKSSTQPRMIVSNSIDISEES 545 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALK 498 +A + +D V + YRW+ + P + + + TP LK Sbjct: 546 VEVRQSAVENEIEIDSDEVAEGENLAET---------YRWEWSNPELAKMQDGPTPSELK 596 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLR 557 ++LE + TPEL K+ + + D W V L + L +++ALN E+S V L + Sbjct: 597 QSLEKDITPELREKVILLSRKEDVWTNIVESLDINNLTKELALNCALIEKSGGRVTLGIH 656 Query: 558 SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARES 617 + + HL R + L E L+ +EL I D +TP ++ + Y+ +A+E Sbjct: 657 TEKSHLEKRTFVKNLTEELAKYYAEQIELEIRVSDE-ITQTPTDFYRQTYKMLREKAKED 715 Query: 618 IIADNNIQTLRRFFDAELDEESIRPI 643 + D +Q F+ ELD S++P+ Sbjct: 716 LQQDKKLQLFLTEFNGELDLASVKPV 741 >UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Tax=Clostridiales RepID=C7GFD5_9FIRM Length = 526 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 145/435 (33%), Positives = 231/435 (53%), Gaps = 3/435 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++ AK Sbjct: 1 MSYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C CR I G +++IEIDAAS V++ R + + V+Y P G++ Sbjct: 61 AVNCEHPVDGSPCGECPACRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E I +L ++ +E + E RA++ +A+AA+GS+RDALSL DQ IA ++ V Sbjct: 181 ETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLGQDLTYDKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG +D + L+ ++E N + +I+E G E + + L + +VQ S Sbjct: 241 TLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYLRNLMLVQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A+ + + Y + ++ YA +R+ +E+ +++ Sbjct: 301 DMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSELSNQIRYAVQKRILIEIAVIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 S ++ + + + A + Sbjct: 361 KPEMEKDYGSLIDRVDSLEKKLEKGIVVTQASGDMAAGTTGSSAASAVLKKKELPKAIPE 420 Query: 418 QLQRVQGATKAKKSE 432 ++++ + S+ Sbjct: 421 DIKQIMSSWSGILSQ 435 >UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU40_DESOH Length = 570 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 170/640 (26%), Positives = 261/640 (40%), Gaps = 74/640 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q+ V L N ++ GR+ HA LF+G RG GKT+IAR+LAK Sbjct: 1 MSYLVLARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHAILFTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T TPC C +C EI G D+ EID AS V+ R+L NV++ PA + Sbjct: 61 AMNCEKGPTPTPCCACRSCLEIASGNATDVFEIDGASNNSVDQVRELRGNVKFMPAHSPY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP HV F ATT+P K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQRHDLSFVGI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + LE + +E+I E ++L+L+A A GS+RD+LSL DQ ++S G VS + V Sbjct: 181 DPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQGPVSHEMVLEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + L A++ + + +++ G + + EMLG + MV+L Sbjct: 241 LGIIDREVIFGLSGAVLAGDMTGALDILDTVYRGGHDIKRFYAEMLGHFRDLLMVKLGVR 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + +M+ R + + +L + ++ ++ VEM ++ L Sbjct: 301 AERLASLPGWAVEKMQAQTRDVTELFLSQAMALMLAEEDRVRFSSQPKIAVEMVFVKLLH 360 Query: 359 FHPRMPLPEPEVPRQSFAPV-APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P +P+ + A A +AP++ + S+ AR Sbjct: 361 TKPVLPIDTLIQKVDALRKSFAQLAGNGNAPATASKDAAPERNADGAAGVSASRPAQARP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + PV + + + E+ P Sbjct: 421 APTENQPRPSSPPPASPLPEETGPVATGTTDPVPLDNAGTWEAILARIDEQYPLLG---- 476 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A + +L + Sbjct: 477 -----------------------------------------------ANLRNSTLAAMEG 489 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 N L S +L + + + L + + Sbjct: 490 GRLEIKVYGSQTNKAILAREQSMENL---------KQVCCDFFKTDINLAVTYTCDTQ-- 538 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P + + D + F + Sbjct: 539 -PAQPDKQKPRTAGP--------DPLVAEALNIFGGTIVN 569 >UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URG8_AKKM8 Length = 732 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 177/730 (24%), Positives = 287/730 (39%), Gaps = 94/730 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV ARK+RP TF DV+GQ+HV+ L N + R+ HAYLF G RG GKTS AR+ AK Sbjct: 1 MSYQVFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRLAHAYLFVGPRGTGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G D C EI +GR +D++EID AS ++ RDL DNV++AP+RG F Sbjct: 61 ALNCSGGPKVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVRFAPSRGNF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ IDEVHML++ SFNALLKTLEEPP HVKF+ ATT+P K+ TILSRC +F L+ + Sbjct: 121 RIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRCQRFDLRPIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HI + E ++ A +A+ A+G +RDA S+ DQ ++ + Q V + Sbjct: 181 EIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLDQLVSFCGDHIEEQQVLHI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + ++ ++ L++E A G + L E++ + I + ++ P Sbjct: 241 FGITSRETVAHALALILNKELPSLLHLLHEQAEAGRDMSQFLSEIISAVREILVSKVDPE 300 Query: 301 ALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A + + + + EL + I + L ++ ++ ++R+ +EM L++A+ Sbjct: 301 ASFDSLPESSKEELAELVKRTHTDKILRLVEVLAETEDKMRWSTNKRLHLEMGLIKAVHT 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS--------- 410 + + + + + Q S + T P P Sbjct: 361 LAEASISDIIMALEGAPLATAAPASSSDLASQQEPSTFISSATAPTPAPRQNIQSPVAAT 420 Query: 411 -----------------------------------QVLAARQQLQRVQGATKAKKSEPAA 435 + + + P Sbjct: 421 NPTPATEEHLMDPIPDFSLSSPASSPAVQKIQSTDAQASPHPTQEAEPQQETLTPAAPPT 480 Query: 436 ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV---- 491 + + + + + + + P E Sbjct: 481 SLAVAEEEFPYSATKLRTKTVPASEEITRHPDSDASDVSKFPTDSPEPTFMDPEENLPLE 540 Query: 492 -------------ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVE 537 + + +A ++ P + ++ + I + W + Q+S L Sbjct: 541 RRTNSFFDNLFDTPSTSSQTQAPVEKEEPAVLSQQSGRTITEEDWKTVLEQMSAKFPLQA 600 Query: 538 QVALNAWKEESDN-AVCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVED- 591 N+ D AV + S L + L ALS G++V ++I +D Sbjct: 601 DFLANSVFSGYDGVAVAISFHPSDRQGMDSLGTGPLRTALEAALSQYIGTSVTISIRQDF 660 Query: 592 -----------------------DNPAVRTPLEWRQAIYEEKLAQARE--SIIADNNIQT 626 P TP + +E + E S D I Sbjct: 661 SIPEPVQEELAPLPAPPPSASTIPAPKPHTPQKKTAEPVQEASKEENEDNSYYTDPLIDA 720 Query: 627 LRRFFDAELD 636 F A + Sbjct: 721 AMEIFRARII 730 >UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibrionales RepID=B7VL96_VIBSL Length = 752 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 277/645 (42%), Positives = 368/645 (57%), Gaps = 33/645 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP F +VVGQ HVLTAL N LS R+HHAYLFSGTRGVGKT+I RL AK Sbjct: 1 MSYLALARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGIT+TPCG C C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGITSTPCGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+HIL +E++ EPRAL ++A AA+GS+RDALSL+DQAIA G+G V T V+ M Sbjct: 181 DNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIALGNGNVVTDTVAHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ L+EA+ ++ MA I A G+EW+ LL ++ LHR+AM Q P+ Sbjct: 241 LGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQLHRLAMYQALPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ +++T+ P DIQLYYQ +L GR++LP +P R+G+EM +LR LAF Sbjct: 301 TLDKAQPD-AERLELMSKTLSPQDIQLYYQIVLKGRQDLPLSPTARVGIEMVVLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + QS +P A P Q Q + P + + ++ Q+Q Sbjct: 360 PAEQTVATAISTQSTSPAPAPAAQNPVQNQVQGVAQSMSQPVPEPRQQVQAPVGSQPQVQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAA----LERLASVTDRVQARPVPSALEKAPA----- 471 + + + + + A + VP A ++ P+ Sbjct: 420 QQAPVQQPVQQQQQNPAQYSDSQGYADHSGNQGYPEQDYPHSQYDVPPAYDERPSYGADQ 479 Query: 472 -KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 +++ +++ +PV Q +TP ++ +P + + R A Sbjct: 480 PQQQQTNYQSQSPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLRSQRRSSAATDNKGS 539 Query: 531 SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 + K A + + R +Q+H + A S + Sbjct: 540 TPKKAKATSAKTSVLD----------RVAQQHGGSERVSPASLSASSTE-------KVTN 582 Query: 591 DDNPAVRTPL-----EWRQAIYEEKLAQARESIIADNNIQTLRRF 630 D+ P P E + + ++ +A E I + L + Sbjct: 583 DNEPYRWKPSKPVVKEVSKELTPTQIKRALEHIKTPEMVDKLLQE 627 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 7/264 (2%) Query: 385 TPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKA-----KKSEPAAATRA 439 +P Q P S P + P T+ Q + + + + A + Sbjct: 491 SPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLRSQRRSSAATDNKGSTPKKAKATSAK 550 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKK 499 V + ++ A S+ EK E YRWK + PV+++ TP +K+ Sbjct: 551 TSVLDRVAQQHGGSERVSPASLSASSTEKVTNDNEPYRWKPSKPVVKEVSKELTPTQIKR 610 Query: 500 ALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS 559 ALEH KTPE+ KL E+I +D W+A + +L KLVEQ+ALN+ ++D ++ L LR+S Sbjct: 611 ALEHIKTPEMVDKLLQESIAQDEWSATIQKLETAKLVEQLALNSVFAKNDTSITLTLRAS 670 Query: 560 QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESII 619 Q HLN AQ +L ++L+ + G L++ + TPLE R+ +Y+ KL A ++ Sbjct: 671 QAHLNTDRAQSELLQSLNTVLGEECHLSVEIGE--GGETPLELRERLYQGKLKDAFTALE 728 Query: 620 ADNNIQTLRRFFDAELDEESIRPI 643 D N+Q + R F AELD +S+RPI Sbjct: 729 NDANVQFIERRFAAELDRDSVRPI 752 >UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 Tax=cellular organisms RepID=A3D5Q4_SHEB5 Length = 1147 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 265/664 (39%), Positives = 357/664 (53%), Gaps = 30/664 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGACGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I QL HIL +E + A++LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 GEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAFGGGNVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 AAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMP-------------LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 P P LPE + P + A V P P P Sbjct: 386 PEKPVKRWQPDAVAEIRLPEWQTPVAATAAAQAPHVNEPQFAETHTAEPHTAEPHSTEPH 445 Query: 408 TTSQVLAARQQLQRVQGAT-KAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 V A ++ Q + + ++ A A V+ + + V D Sbjct: 446 IAETVPAEKKTALIEQTSANQQVETAQADAVDMAEVSIEPADTVEQVFDAELEADAALIA 505 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 E+A +A + V A + + + + P + IE + Sbjct: 506 EQAVILSQAQSQGFNADSLNADTVNAEVEPQTQTVSTAQAPSIHISEPVADIEASVASLD 565 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 +P+L+ A ++ + + S+ + + +T+E Sbjct: 566 AQNSEVPELIGATAESSIVNPAMAETLVGSTSADNNSAAENTLDN-----NPTTNNTLEQ 620 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ---------TLRRFFDAELDE 637 +++ +P A+ + A D ++ FD+ Sbjct: 621 NGLDEHSPYGTEAEHSYPAMGDYAQESAPLDSYQDAYVELSSGSYNDDDFHHSFDSHAVP 680 Query: 638 ESIR 641 + ++ Sbjct: 681 DDVQ 684 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 5/303 (1%) Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 D + ++ L P + V V T P ++AP+ A T Sbjct: 820 LDPDLTIDFDDDFDLDLEPIALHQSVPSAASASGSVPADPVKPATYDRPPWEAAPEVAST 879 Query: 403 VPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR---ARPVNNAALERLASVTDRVQA 459 L ETT + A++ + + A+ + Q+ Sbjct: 880 AELIETTQVDSGNTDIADAGMAQGSDINDDSASSGQGFLEASNIANDGQNNAADGNDSQS 939 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA-- 517 S + + +A A+E + E+A + Sbjct: 940 AEQGSDSKLQALQTQARHQDKVQATALTPASKTALTQTASAVERTQEREVALSTLPISGH 999 Query: 518 IERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 W ++ L + V Q+A+N+ + + + L L+ +Q+HL A +L +ALS Sbjct: 1000 PLDLHWYKLMASLEVGGRVRQLAVNSVCQTQSDPLPLLLKPNQKHLAADVAIVQLEQALS 1059 Query: 578 MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 G+ + +V + TPLE R+ ++E L QA +S+I D+N+Q L + AELD Sbjct: 1060 AALGNPRRVQVVIGIDAQRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDA 1119 Query: 638 ESI 640 +S+ Sbjct: 1120 DSL 1122 >UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridium RepID=B8I549_CLOCE Length = 562 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 146/438 (33%), Positives = 221/438 (50%), Gaps = 2/438 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWRP F DVV QEHV+ + N + GRI HAYLF GTRG GKT++A++ A+ Sbjct: 1 MSYTALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I +D++EIDAAS V++ R++ D V YAP++ R+ Sbjct: 61 AINCINPKDGNPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDP KLP TILSRC +F K + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +++ I I + L+AR A+G+LRDALS+ DQ IA G ++ Q V Sbjct: 181 AGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGSTTITYQNVLDA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--S 298 +G + DD +V+ + N E ++A + +A G + +++ + + +L + Sbjct: 241 IGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +M + + + L +L YA ++R+ +E+ L+ Sbjct: 301 PENILDVGKQYLDKMIAQSEAFTKERLIGIIKELSSFETQLKYALNQRVFLEVMLISISV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + + P + + Sbjct: 361 GSYGQSGSDNNLLDRITNLESAVRTGATALGPSVKDRSSVSVQVNVANTSPVPSGKKLDN 420 Query: 419 LQRVQGATKAKKSEPAAA 436 L + G++ K S + Sbjct: 421 LPPIPGSSVPKSSAKGNS 438 >UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERB2_AMOA5 Length = 629 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 164/638 (25%), Positives = 281/638 (44%), Gaps = 15/638 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RP F+ V+GQ H+ T L N + + HA+LF G RGVGKT+ AR+LAK + Sbjct: 4 FVVSARKYRPSVFSHVLGQAHITTTLKNAIRTNHLAHAFLFCGPRGVGKTTCARILAKAI 63 Query: 63 NCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ PC CD+C+ Q ++ E+DAAS VED R L+D V+Y P G +K Sbjct: 64 NCQQLTADIEPCNACDSCKSFNQRTSFNIYELDAASNNSVEDVRSLVDQVRYPPQNGAYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + + E Sbjct: 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILSRCQIFDFQRIKPE 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I QL+++ +EHI ++ AL L++ A+G+LRDALS+ D ++ G G+++ +A L Sbjct: 184 DIVQQLKNVSEQEHIPYDEEALHLISLKADGALRDALSMFDVIVSFGAGKLTYEATLENL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 LD L EA+++ + + + + +E G + L ++ + + Q Sbjct: 244 HILDYSCYFKLTEAILQNDIKACLLIYDEIIQSGFDGLYFLEGLVAHFRSLLVAQDPQTL 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +I+ R A+ P + Q + + ++R VE+ L+ + Sbjct: 304 PLLEVAPSIQERYGMQAQQASPGFLLDALQLANQCALQYKESLNKRFHVELALIELASKM 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + +P V+ + ++ + + V E T Sbjct: 364 STGHPKDSVLPNPGVTTVSNNPTIPIVSASKPTNASDRPSAAVNKTEATVVKDNKEADKV 423 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q + K+ + A++ +++ A P+ ++K + Sbjct: 424 IEQVQEELPKTAVSVASKYDRKEEEITQQIKEERPNPAAGLAPNIVKKGVLQSTI----- 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV- 539 P + + + + + E + + E + W A QL L + + Sbjct: 479 KIPQLSHIKANIDQPKVVETVNTTTVMEASVEFTKEIVLV-HWQAYTQQLKLAERMPAYN 537 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 LN E +N + + ++ +++L L D AV TP Sbjct: 538 LLNQPIELENNTITIKFTNTVEERILADIKEELVNYLRNNLKHP------AIDVKAVFTP 591 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + R + ++QTL+ E+ + Sbjct: 592 TQSGPQRPYTAQERFRYLANKNPHLQTLKEQLQLEVVD 629 >UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridiales RepID=C4ZB56_EUBR3 Length = 523 Score = 368 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 146/422 (34%), Positives = 233/422 (55%), Gaps = 7/422 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT++A++ AK Sbjct: 1 MSYQALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C +CR I +G +++IEIDAAS V++ R + + V Y P GR+ Sbjct: 61 AVNCEHPVDGSPCGECPSCRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYRPTEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 + I +L ++ +EH+ E RA++ +A+A +GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLGEKLTYENVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D + L+ +++ + + ++ E G E L+ + + + ++Q S Sbjct: 241 VLGAVDTEVFSRLLRRILDEDVTGAIRILGELIDEGRELSQLVNDFTWYMRNLLLLQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A + P + Y + ++ +A +R+ VE+ +++ Sbjct: 301 DMEEVLDISKDNLEALKEEAALVKPETLIRYIRVFSELSSQVKFASQKRIMVEIAIIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP----QPQSAPQQAPTVPLPETTSQVL 413 S + Q Q +A + LP+ Q + Sbjct: 361 RPQMEKSYDSVLDRINSIEKKLEKGIPIAAQAAQTQDMQQAAASEPIVKKELPKAIPQDI 420 Query: 414 AA 415 + Sbjct: 421 SE 422 >UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJV5_9BACT Length = 533 Score = 368 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 146/423 (34%), Positives = 222/423 (52%), Gaps = 1/423 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ F +V QEH+ L + ++ RI HAYLF+G RGVGKTS+AR+LAK Sbjct: 1 MSYIVLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC C NC EI G D+IEID AS T V+D R+L + Y + + Sbjct: 61 SLNCVNGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPASSSNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+++FNALLKTLEEPP++V F+ ATT+PQK+ TI+SRC ++ K + + Sbjct: 121 KIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I + +L L+AR A+G +RDALSL DQAI+ ++ V + Sbjct: 181 ASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + + + + + ++ ++ +GI+ + + M + I +++ Sbjct: 241 FGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFVR-ILILRKLQV 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ELA + L+ R +L + + + +E +++ Sbjct: 300 QIKDINPDELSLFDELAELFGQNKLLYILSYLIACRNDLRGSSNPYLILEALMIKLCKLD 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A P ++ +PT S + VPL E T Q Sbjct: 360 EMEDIASLIGKININAFAQPVSMASPTTAKTIQSSYVASSAEVPLREETIVAKMEFNQEN 419 Query: 421 RVQ 423 Q Sbjct: 420 LEQ 422 >UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderiales RepID=Q13Z80_BURXL Length = 957 Score = 368 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 233/629 (37%), Positives = 320/629 (50%), Gaps = 14/629 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+TPCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LEHIL EE + ++ +AL+LLARAA+GS+RDALSLTDQAIA QV+ +AV M Sbjct: 181 GHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSLTDQAIAYSANQVNEEAVRGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ + +G V+++ +E A R + + L ++ LLHRIA Q +P+ Sbjct: 241 LGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + +QL+YQ IGR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAGD-LRRFAEALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V + T P V + A Sbjct: 360 PAPTGGGGAVGAARAPGQSGAGGARRTGAPAVAAQQGASGSPVSQARAVAASGAVPGTSF 419 Query: 421 RVQGATKAKKSEPAA-----ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + A E A + V ++E + + A Sbjct: 420 EAQVSAAAPGRETQPGNVVVADKGAVVGAVSVEPATRAVAQAGSTVEVPPAVGDVQAAAA 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + AT ++ +A AA A PW Sbjct: 480 DSAQGAVAGQSPAAEPATVAGPAPVIDELNPAPASAAPAAPAPALAPW----DDAPANPA 535 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + A D+ + ++ + ++ L + V +T D + Sbjct: 536 AREASTTAGL---DDPAAGEVSAAAGDNGSAASEASTTAGLDDPASNHVSVTAGLSDAAS 592 Query: 596 VR-TPLEWRQAIYEEKLAQARESIIADNN 623 + A E L A A N Sbjct: 593 NEVSAAGLNGAAPNEALTAAALEDEAPAN 621 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 65/186 (34%), Gaps = 8/186 (4%) Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH---EKTPELAAKLAAEAI 518 L A + PV A + ++ P A Sbjct: 763 EYMPLTAADEGYYGLPDEGYMPVFDSGPDDVRVSAAPASTAAPVIDQRPLPPAVPLDPLG 822 Query: 519 ERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 + W A L L + Q+A N+ N + L++ Q KL AL+ Sbjct: 823 FKGDWPALAVDLPLKGISYQLAFNSELMALEGNTLKLNVPVPQ--YAEASQVAKLKTALA 880 Query: 578 MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 G TVE+ + PA RT A+ ++ +A I AD +Q+L R F A + Sbjct: 881 DRLGHTVEVLVEVG--PARRTAAAHDAAMRAQRQQEAEREIGADPFVQSLIREFGASIVP 938 Query: 638 ESIRPI 643 SIRPI Sbjct: 939 GSIRPI 944 >UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V121_9FIRM Length = 615 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 169/639 (26%), Positives = 278/639 (43%), Gaps = 28/639 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ FAD+VGQEH+ L+ ++ G+I HAYLF+G RG GKTS A++LA+ Sbjct: 1 MAYVALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPCG CD+CR I G +D+ EIDAAS +++ RDL ++V++AP G + Sbjct: 61 ALNCAEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML+ +FNALLKTLEEPPE V F+LATT+P K+P TI SRC ++ + V Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L ++ E I E AL ++A A+G +RDALS+ DQ A +G ++ + V Sbjct: 181 TEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + E + + ++ +++ G E +LVE+ + + + Sbjct: 241 LGLVGRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLMIAGVGGT 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A ++R A +I + L ++L +P R+ E L+ Sbjct: 301 ISAAELCAGDAEQLRADAAQFSEDEIMTILRRLNETMQDLRTSPQPRIAAETLLIELCHA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P A A A + + A + ++ + AA Sbjct: 361 DGAAVSVGAAAPHPGSADAAHIARL--------EAQVEELAARLAAGSVSAPISAAGGVP 412 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + K++ A + + A+ + + L+ + R K Sbjct: 413 PAPTPRPRTAKADSTTAPKTASKSAASSAAKVAADGAPRQ------LDMKVWQSFQVRLK 466 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + A + + + + A+ R + ++ L+ L Sbjct: 467 ERNRLAASLLSGAAYEGMTETHFFIRPSSDMARDYIAKRHRAVFDEVMTALAGRPL---- 522 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + + + L E I E +PA Sbjct: 523 ---SVVCTGGEEDAVPAPPIKASPDYPAPVAALLEVAGDG------ARIEEVTSPAPPRA 573 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 E + A ++K A+ + + FD EL + Sbjct: 574 AEKKPAPPQQKQAEEDDCETYEPTPDEEAEMFDDELPPD 612 >UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=Desulfuromonadales RepID=Q3A7L0_PELCD Length = 582 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 164/442 (37%), Positives = 244/442 (55%), Gaps = 3/442 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ+F D+VGQEHV L N + GR+HHA+LF+G RGVGKTS AR+ AK Sbjct: 1 MSYLVLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++ PC VC +CREI G+ +D+ EID AS T V+D R+L +N++Y P+R R+ Sbjct: 61 ALNCEQGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPPEH KF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I+ R+L L+AR EGS+RDA S DQ IA V V + Sbjct: 181 PLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + +E+++ + R++ + G + E++ L + ++++ Sbjct: 241 LGMVDRRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCRELVETLRSLVVLKVVPE 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P AL + +R L+ T+ D++ L+ EL + R+ +EM LLR Sbjct: 301 PEALLDATPDELEELRRLSATVELEDLERAVTVLVRTEAELAGSSFPRLALEMALLRLAH 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + V + P A ++ P + Sbjct: 361 LPSGRDVATLVRQVEDLQRRLESGVPPAERAQPA-SYASSESIVAERPAPAPVQAQVPEP 419 Query: 419 LQRVQGATKAKKSEPAAATRAR 440 Q A K S+ A ++ + Sbjct: 420 AQSTAVAAAGKGSDAQAESKPQ 441 >UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 Tax=Sphingobacteriales RepID=C6W6R9_DYAFD Length = 621 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 257/639 (40%), Gaps = 27/639 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RP TF VVGQ H+ T L N + + A+LF G RGVGKT+ AR+LAK + Sbjct: 4 FVVSARKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQAFLFCGPRGVGKTTCARILAKTI 63 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ G CG C++C + ++ E+DAAS VED R+L+D V+Y P G++K Sbjct: 64 NCQNLGDDVEACGECESCVSFQNNASFNIHELDAASNNSVEDIRNLIDQVRYPPQTGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + + Sbjct: 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQSK 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVSTQAVSAM 240 I H L I +E I E AL+L+ + A+G LRDALS+ D S + ++ AV Sbjct: 184 DIAHHLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFSTNNHLTYAAVLEN 243 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D + +A+ + R + L +E +G + +V +L + + + Sbjct: 244 LHILDYDYYFKITDALTAGSIARSLVLFDEILRKGFDGHLFVVGLLEHFRNLLVCKDPAT 303 Query: 301 ALGNDMAAIELR-MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++ R E + + + A ++R+ VE+ L++ Sbjct: 304 VTLLQVSESAERKYLEQSLMADMSFLLSALSITGQCDINYKSAKNQRLHVELCLMKLANL 363 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L ++ P APQ + V + A Sbjct: 364 PQVLQLHSLAAVDETAKKKVEPQQSLNNG----PAPAPQPSAVVNGQPSNGSAYAQAPAP 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + + T + V + + + + + P+ + Sbjct: 420 QPAMPQHPSPQQAMHQQTAPQQVMPQQTAPQQVTPQQPASSRLKNTISLTPSLTPPTQQA 479 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK--LVE 537 A P Q + A + + W + E Sbjct: 480 AKEPAAQPRVEYAAVPNGT-----------KKEELTLPNLQRLWYEFSQKRQQAGNSTTE 528 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 Q+ LN + + + + L + + + L L + +L I Sbjct: 529 QITLNREFQLNGTTIEIALDNDHQQDAVMNMRYDLLGFLKSRLDAP-KLDIN-----PRV 582 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 P E + + + + L++ ++D Sbjct: 583 APQEVN-RLPYTPAEKFNYMAEKNPYLLELKQALGLDVD 620 >UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunits n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017455DA Length = 676 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 173/668 (25%), Positives = 273/668 (40%), Gaps = 40/668 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV ARK+RP+TF DV+GQ+HV+ L N ++ R+ HAYLF G RG GKTS AR+ AK Sbjct: 16 SYQVFARKYRPRTFEDVLGQDHVVRTLRNAIAQNRLAHAYLFVGPRGTGKTSTARIFAKA 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G + C EIE+G +D+ EID AS VE R+L + V++AP R R+K Sbjct: 76 LNCPNGPRVDFDPDDEVCVEIEKGISLDVREIDGASNNGVEQVRELREEVKFAPTRCRYK 135 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y IDEVHMLS +FNALLKTLEEPPEHVKF+ ATT+ K+ TI+SRC +F L+ + Sbjct: 136 IYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISRCQRFDLRRIPAG 195 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I L HI E +A +A +A+ AEG +RDA S+ DQ +A ++ Q V + Sbjct: 196 LIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSMLDQLVAFCGERIEEQDVLDIF 255 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + +L +++ + + ++ A G + LL +++ + + Q+ PAA Sbjct: 256 GFTRGETVANLAARVLDRDTVGALKELHSQADTGKDLGRLLTDLIQHFRTLLVHQVDPAA 315 Query: 302 LGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D+ + +R+ + + + L + +A ++ + +E+ +++A+ Sbjct: 316 AEEDLSPEVADMVRQQSAMVQAESLLRVMDGLAEVDARMRWASNKLLHLEIGVIQAVQTL 375 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + L E A P + P E A Sbjct: 376 GEVTLSEVIEALGGAPSPDLIARR------AAPPVPSRAVVEAPAAERPRPAPVAVAAPT 429 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K A P+ E PA Sbjct: 430 PAPVSLSTPKPAAAPVVEPAPLPALFREEPPPQAPVPPLFRDEPPQTDRPAPVAVAPTPP 489 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ-- 538 V + P A A + AA + W + + ++ Sbjct: 490 PVAVPAEVPPAVEPAAPTPAPAPVAEAPTSPPAAAGGTPEEQWRQIKDRFRIKSPLKADY 549 Query: 539 VALNAWKEESDNAVCLHLRSSQR----HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + A++ + + + +S+ L ++ L E +S + G + L I +P Sbjct: 550 LDVAAFQSCEGKTLRIGMPTSEAGHRDALLYAPVRKALEEIMSDVIGRPMMLEINL--DP 607 Query: 595 AVRTPLEWRQAIY-------------------------EEKLAQARESIIADNNIQTLRR 629 ++ P E E D IQ Sbjct: 608 SMEPPPMAEPMFTFSDPEPAPAKAPAAPKPEPKAEAKSEAAKPAINEDFYNDPLIQEALV 667 Query: 630 FFDAELDE 637 F A L + Sbjct: 668 KFKATLVK 675 >UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZX2_HALOH Length = 588 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 142/390 (36%), Positives = 224/390 (57%), Gaps = 2/390 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L RK+RPQ F D+VGQ HV+ L N L GRI HAYLF+G RG GKTS A++ A Sbjct: 1 MGFLSLYRKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+NCR+I++G+ +D+IEIDAAS +++ R+L + V++ P G + Sbjct: 61 ALNCIHGPTTEPCGQCENCRKIQKGQSIDVIEIDAASNRGIDEIRELREKVKFYPNEGEY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPPE V F+LATT+P ++ TILSRC +F L V Sbjct: 121 KVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQRFDFSLLPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ +L +I +E + E AL +LAR+A G LRDA+SL DQAI+ ++ V M Sbjct: 181 REIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISYTGNNLNPIDVQGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-QLSP 299 LG + + ++ ++ N + L+N +RG L+ +++ ++ +V + P Sbjct: 241 LGKVSREVLSQFIKYVLNGNSVEALKLVNRIISRGNNVGRLIGDLIEYGRQLLLVKECGP 300 Query: 300 AALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + ++ AR I + + L + +++ Y+ + R+ +E+ +++ Sbjct: 301 DSRIIEYPDEVLEKISGEARAIKTSRLIEIIDQLTVMERDIKYSDEPRLILEVGIIKMAN 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ 388 + + E + + Sbjct: 361 PEAGGSIIDLEKRIARLENIISGKITANDG 390 Score = 41.5 bits (95), Expect = 0.092, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 42/163 (25%), Gaps = 12/163 (7%) Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 V + + + R W + Q+ + Q Sbjct: 426 ADKNRVKSDNTPEHETGIRTDMGGGQGVEDASGGELTLDKFRKGWPVVLKQIKEKNIKAQ 485 Query: 539 --VALNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + + + ++ + + +S + G+ ++ Sbjct: 486 AFLIESRPAAFDGEVLVIEFPEDKAFHKKGAEKEKKLIEDVVSKIAGTRCQVRFRLAG-- 543 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 E + + + ++ D+ + + FD E+ + Sbjct: 544 ------EKEKGYNNTAVKKKEKNKKDDDLVNRVMELFDGEIIK 580 >UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WR18_9SYNE Length = 745 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 160/602 (26%), Positives = 260/602 (43%), Gaps = 9/602 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQTF+ +VGQ+ + L + L RI AYLF G RG GKTS AR+LAK L Sbjct: 2 YEPLHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSL 61 Query: 63 NCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + TA PCG CD C+ + QG +D++EIDAAS T V++ R+L++ Q+AP + R+ Sbjct: 62 NCLSSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQCRY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DEVHMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + Sbjct: 122 KLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +I EE I EP A+QL+A+ ++G LRDA SL DQ + +++ + V + Sbjct: 182 PSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQL-SLQANKITVETVWDL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + L+LV A+ + ++ + +G E +L ++G + + + +P Sbjct: 241 VGAVPERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPK 300 Query: 301 ALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + M A+ + + Q L ++ R+ +E+TL L Sbjct: 301 RVDLVAITSPTWAEMIPFAQKLSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLLP 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + P A + +A +V S + Sbjct: 361 SALEVMAKRTPASNAATNPATNRANSAAVDNARETTAATDITSSVKPKIAPSITPPIVKP 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 S A + A + + A P KA + Sbjct: 421 AIASTIQHPVPPSVDQPA---QTAATGASKSPTEPPVSLPAIPGEPNEPKAELSDSSASS 477 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 P + + + + A D W ++ L Sbjct: 478 NNLDPAKAAVLSDPSAASATQPTPLKPAAPEKPIAVAFGNLSDLWKQILAVLQPRGTQML 537 Query: 539 VALNAWKEESDNA-VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 ++ D + RS+ R L A + +++++ D Sbjct: 538 MSQQGMLLGFDGVGAKVGFRSAPLQKAARERIPNLEAAFQTVFQRPIKISLEVVDTSKPV 597 Query: 598 TP 599 P Sbjct: 598 DP 599 >UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUL1_HALO1 Length = 649 Score = 367 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 186/648 (28%), Positives = 275/648 (42%), Gaps = 26/648 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP TF++VVGQEHV LAN + R+HHA+LF G RGVGKT+ AR+L K Sbjct: 1 MSYVVLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVHHAFLFCGPRGVGKTTAARILGK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C I G VD E+D AS ++ R+L + V+Y PA R Sbjct: 61 ALNCERGPTAEPCGSCVACETITNGTAVDYFEMDGASNRGIDAIRELTEAVRYQPAVLRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TILSRC ++ K + Sbjct: 121 KVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTILSRCQRYDFKLVPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++ L I E I + A+ L+ R + GS+RD+LSL DQ I+ G + V+ Sbjct: 181 PKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYVGTSNIGESDVAE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +LV A+ E + + + + A ARG++ L ++ L +A++Q++P Sbjct: 241 VLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARAIVRYLRDLAVMQVAP 300 Query: 300 AALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A G +RE A + + + ++ +L R+ +++ L+ Sbjct: 301 EAEGLIDGSEEEAAELREHAGRLSRERVTQMFDRMVQACNDLADTQMPRLVLDLALIDVA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A P +PL + + + + P Sbjct: 361 ALEPVLPLGDLIDRLGALERRLGGGGGRGGPGGGGRGGPSRSPASAASP---------GG 411 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + A+ S P + P PS ++ PA+ +A Sbjct: 412 QRGNARNPGAARMSAGDLDPELVPPPPPGVAVAPQQQQPPSQPPPPSRPQQPPARAQATP 471 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK--L 535 + A P A A AA A E+ W + L L Sbjct: 472 PPPPAEDF-DRPPPAEPPAAPPAGRASAPAAAAAPNAGESDMMAAWEQMLPALGETHRSL 530 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLN----NRGAQQKLAEALSMLKGSTVELTIVE- 590 + N + L + + L G V+L + Sbjct: 531 AGFYEHAKILSAAANRIEAGFAPEMSALAELAMEPESMAAMRSFLHGYFGRPVDLAVRVL 590 Query: 591 --DDNPAVRTPLE----WRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 + ++P + EE Q A + + F Sbjct: 591 SAAEAEKNQSPARSVFDLNRERAEEDKRQRELEARAHPIYKKVLSTFG 638 >UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKH0_FIBSS Length = 575 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 175/573 (30%), Positives = 283/573 (49%), Gaps = 3/573 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +ARKWRPQ+F+D+VGQEH+ L N + GR+HHA+LF+GTRGVGKT+ AR+LA+ Sbjct: 1 MAYIAMARKWRPQSFSDMVGQEHIAKTLENAIQGGRLHHAFLFTGTRGVGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG CD+C++I G +D+ EIDAAS T V++ RD+++ VQY P G++ Sbjct: 61 TLNCKGSDPLHPCGECDSCKDIAGGNPMDVYEIDAASNTSVDNIRDVIERVQYPPVIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS +FNALLKTLEEPP HV F+ ATT+ K+P TILSR +F K L V Sbjct: 121 KIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQRFDFKRLTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QIR +L +I +E I AL + A A+GS+RD L+ DQA A +++ ++V ++ Sbjct: 181 DQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFTGNEMTAESVRSV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQLS 298 LG + SL++++ + + ++++A GIE+ LL L + + Sbjct: 241 LGIPPVELFFSLIQSIENHDIKGCFRMVDDAVKIGIEFIPLLDGFGKFLRNLLYARLDAF 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 N + + + A+++ DI + L+ + L Y+ + R+ VE T R Sbjct: 301 TPDALNITEELYTKYKSCAQSLTNGDILRISKMLIDLQGTLRYSTNPRLLVETTFARMAW 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L + AV A ++ Q Sbjct: 361 LDRLVDLRKALAAINDPKSAENDAVKKKVTEVSAMIDAQEEVQASYDDPFAGYDQGGVQA 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 R + + A V +AA+ T + P P AL A + + A W Sbjct: 421 FSRYEISAAWPSILSNIANDGDYVFSAAIAGTTLETGDPEQNPFPIALTYAGSTENAENW 480 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + V + L+ L+ + + + E+ + AA++S L L ++ Sbjct: 481 GYRQMTEHPEYVERVTRILEDRLQTKIALSIRTRAFTESELAEQRAAKMSPYELD-LEKE 539 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 L+ ++ + + + L + ++ Sbjct: 540 PGLSKLQQMFATELVFTKKLKKAALVAQTDEED 572 >UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Coriobacteriaceae RepID=C7MLT3_CRYCD Length = 900 Score = 366 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 173/621 (27%), Positives = 271/621 (43%), Gaps = 17/621 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RPQ F DVVGQEH+ L N + ++ HAYLF G RG GKT++ARLLAK L Sbjct: 3 EALYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAKALL 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 CE G T+ P G C C+EI +G D+ E+DAASRT VE+ R+ ++ V +AP RG+ K+ Sbjct: 63 CEKGPTSEPDGSCRECQEIAEGVHPDVYELDAASRTGVENVREEIIGRVNFAPTRGKAKI 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDPQK+P TI SRC +F L E+ Sbjct: 123 YIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQRFDFHRLSNEE 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L + E++ E AL L+A A+G +R+AL+ +Q IA G+G+V+ +LG Sbjct: 183 IVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGEGKVTVAGAEDLLG 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +LD ++ A+ + + + G + +M + + ++ L+ Sbjct: 243 SLDSSDLAEIMAAVGVRDAAACFSWVASYVETGADLAQFTRDMAQQVRNLYVMSLAGTDA 302 Query: 303 GNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 D+ + + P + L EL A ++R+ E+ L R + Sbjct: 303 ALDVTDAERRELASELKLFGPNRLTHLLSILGELSSELRTASNQRLAFEIALTRMIRPES 362 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + L ++ + P Q ++ Q +P S + Q Sbjct: 363 DLTLEALAARIETLEEQLAQSKQPAQSTPSQREAVAQSESAAGIPVQASAHVPPVGASQP 422 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 Q PAA + A + SV + + A + + AT Sbjct: 423 AQPVPVVVPQSPAATSVAAANPSTPAVSQTSVPVQGAVQASMPASQSSATTATQSPTPAT 482 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 + A+ + E A ++ A + W VS + K+ V L Sbjct: 483 QSNSPVVQPTASVETA--------AGETAEIISNPAALQRVWRQVVSIVKREKVSYGVLL 534 Query: 542 --NAWKEESDNAVCLHLRSSQRHLN-----NRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + ++ L + L ++ L A G + L + + + Sbjct: 535 VNASVQVQAGGQGVAILFPADNPLAFSMAQKPEVKEVLEGAFRQAIGKDIPLALKQKPSS 594 Query: 595 AVRTPLEWRQAIYEEKLAQAR 615 + + A Sbjct: 595 TTQGAASGEPLERSPLDSSAN 615 >UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=root RepID=Q2LYB8_SYNAS Length = 588 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 161/558 (28%), Positives = 251/558 (44%), Gaps = 14/558 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLARKWRPQ F DVVGQ+HV+ L N + RI HA+LFSG RGVGKTSIAR+LAK Sbjct: 1 MDYLVLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G TPC VC NCREI +G +D+ EID AS +++ R+L + +++ P R+ Sbjct: 61 AINCEQGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+R +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F + L + Sbjct: 121 KVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL I E I L +A A +GS+RD+ S+ DQ I+ + +AV + Sbjct: 181 RQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG D L EA++ + + + ++ E G++ +L + +V++ Sbjct: 241 LGRTDRRFLFQLSEAVLRRDAGQCLRIVEEGYYAGLDMTYFYTLLLHHFRNLLLVKIVGP 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + + +Q LL + + + R+ +E + R Sbjct: 301 QQELLDLPGNDLSGIEAQVAEVSRETLQQLLDILLAEEESARRSHNPRLHLEAIVCRMAG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P +P+ E + + + A +P+ P TT + Sbjct: 361 LPPALPIEEILSRMEDLE---TRLASSAPCLSETVPGAASFSPSKPGNSTTVRERPLTLP 417 Query: 419 LQRVQGATKAKKSEPAAATRARPVN---------NAALERLASVTDRVQARPVPSALEKA 469 + R + + + P + A +++ + + + E Sbjct: 418 IVRTEDRSVREPMAELQGAVRDPAHAGGDVWADFKAHVKKHSILLASKIEQGECLGCENG 477 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 + + + + E + L + + E+ R Sbjct: 478 HLRIGFRKGSVFFEDLNEPEQKSRLSELAGSFFKTAVTVDIEPVETESDGRGSGGRLSEA 537 Query: 530 LSLPKLVEQVALNAWKEE 547 ++ E++ A Sbjct: 538 MARKNQAEELRREALNHP 555 >UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax=Desulfovibrio RepID=C4XU00_DESMR Length = 654 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 178/664 (26%), Positives = 275/664 (41%), Gaps = 41/664 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQ FADV GQ+ V L+ + RI AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSTISLTAKYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET T PC VC CR+I G D+IEIDAA+ KV+D R L ++V YAP R+ Sbjct: 61 ALNCETAPTGEPCNVCSQCRQITAGVSPDVIEIDAATHGKVDDARRLKEDVGYAPLNSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP V F+LATT+P K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E + +E +A+ L+AR GS+RD++SL Q +A G +++ + Sbjct: 181 SELEAHLSSVLMREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELTEADARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L+EA+ +G V+ L+ + +G++ L E+ + + +++ + Sbjct: 241 LGLAGQEVFFGLIEAIRAEDGPAVVELLRQVLDKGLDIGFFLRELASMWRNLFLLRQAGE 300 Query: 301 ALG---NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD------------- 344 + A A I I +Q L G++ + + + Sbjct: 301 RALPVVDLPAEEAGEWLVWAGRIEAAHIHACWQMTLEGQRRVQTSLEPALALELLLLNMA 360 Query: 345 --RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP---QPQSAPQQ 399 R+ L A P +S P P +PQ Q Sbjct: 361 YLPRLLPLQNLASCAAPAASGPGGSGGSSGRSGGQGGGLTPRQPQGGRPGGYRPQPLADQ 420 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 PET ++ AA P + R + T + Sbjct: 421 VAPYGQPETGPGRDQGGYGRPAAGLDAAPPTAQSAAPRSYPPQAAPPVSRSEAPTPHAAS 480 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 P + A A A A+ A + ++ A Sbjct: 481 GPGNGSTPPAQAPAAAPAAGGY--APSGSGQSASFAASGQGHGSSGHDDVPRPPQAAPAG 538 Query: 520 RDPWAAQVSQLSLPKLVEQVALNA---WKEESDNAVCLHLRSSQR--HLNNRGAQQKLAE 574 W + Q + + + + + + ++ L + ++L E Sbjct: 539 PRTWDGFLRQAGRGSDMVALKHAQGTFSPDPAPGELVVSCTNAFHRGRLAHPDKLRQLTE 598 Query: 575 ALSMLKGSTVELTIVEDDNPA-VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDA 633 A G V + + E + +P + R + + ++ FDA Sbjct: 599 AAEAYFGPGVTVRLTEGEAANDRMSPHDLR------------DYVDNHPEVRQAVTAFDA 646 Query: 634 ELDE 637 E+ E Sbjct: 647 EIIE 650 >UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A8C7_THECD Length = 715 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 171/610 (28%), Positives = 247/610 (40%), Gaps = 23/610 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA++ GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPATFAELKGQEHVAEPLQQALRNGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + G +D+IEIDAAS ++D RDL + +AP Sbjct: 60 SLNCEQGPTPDPCGKCESCVALGPGGSGHIDVIEIDAASHGGIDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + L Sbjct: 120 RFKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDKVIGTIRSRTHHYPFRLL 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E +L E + +EP AL L+ RA GS RD LS+ DQ +A D ++ Sbjct: 180 PPGTLRELVEEVLQSEGVPYEPAALPLVVRAGAGSARDTLSILDQLVAGADESGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D +V+A +G V A I+ G + ++L + + ++ Sbjct: 240 VSLLGYTDSALLNEVVDAFAARDGAAVFAAIDRVIESGQDPRRFATDLLERVRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + +M+ A + + L G +E+ A R+ +E+ Sbjct: 300 VPEAGSTGLLDVPPDELEQMQRQASAMGAATLSRAADLLHAGLREMRGATSPRLALELVC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + A S AP P Sbjct: 360 ARILLPAAYQDERSLLARLEQLEQ--RIAQGGIGTTVTGGASPATGAPAPSAPAPQGLAA 417 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + + +RP + S + A+ AP Sbjct: 418 PAAAPAWPSAESASRQAPSAYPTAPSRPPAPEPPAQGPSNQSAGASPAPVQAVPAAPRPG 477 Query: 474 EAYRWKATTP--------VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 A A TP + V + A A R W Sbjct: 478 GAGWGAAATPSVGGGIPAPGAENRSVDNRWGAPSPPAPASSNAPAGGGPDVAAVRQAWPN 537 Query: 526 QVSQLSLPKLVEQVALNA---WKEESDNAVCLHL--RSSQRHLNNRGAQQKLAEALSMLK 580 V + V ++ + N + L ++ + N L E Sbjct: 538 IVEAVKKKSKVAWTSIMSGVQPVSLEGNLLTLAFEVPGARTNFVNGRRDTVLREVFREFF 597 Query: 581 GSTVELTIVE 590 G + V Sbjct: 598 GVDWRIDTVL 607 >UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=cellular organisms RepID=B2GFF0_KOCRD Length = 1264 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 149/545 (27%), Positives = 231/545 (42%), Gaps = 11/545 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TF DV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TATPCG C++CR++ + +D+IE+DAAS V+ RDL + +AP R R+K+ Sbjct: 64 AEGPTATPCGRCESCRDLARDGAGSLDVIEMDAASHGGVDHARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 124 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTHHYPFRLVPPEP 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + LE + EE ++ EP L L+ RA GS+RD+LS+ DQ +A D + +S A+L Sbjct: 184 LMRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQLMAGSDERGISYDLAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A + V + ++ G + + ++L + +V P + Sbjct: 244 GYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRFVEDLLERFRDLVVVNAVPDS 303 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 N + R+R A + ++ E+ A ++ +E+ R L Sbjct: 304 AANILHGMPTDQINRLRNQATQLGAAELSRSADITNEALNEMTGATSPQLHLELLCARIL 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + A P A Sbjct: 364 LPSADDTTRGITSRVDRLERRLSIPRGAGIRPGGPSIPPAPGAADGVDPAAPHAPGADAM 423 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS----ALEKAPAKK 473 + + PA + + + P + ++A + Sbjct: 424 APVAPDSPSSDASAAPAREAADPAPSGPVRQDGSQPGRSALTTPDIAEPSIPEDEAENPR 483 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + A PV Q + E + A DP + S Sbjct: 484 GSDHPAAGDPVPQGERGPQGNHPPADGTTTEHDAAGQERSPATGAPADPTKSPASSTPSR 543 Query: 534 KLVEQ 538 Q Sbjct: 544 PDDAQ 548 >UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N3Y5_9GAMM Length = 569 Score = 365 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 228/545 (41%), Positives = 330/545 (60%), Gaps = 3/545 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++F +VVGQ+HVL AL NGL R+HHA+LFSGTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFEEVVGQQHVLRALINGLDQNRLHHAFLFSGTRGVGKTTLARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++TPCGVC +C E++ GRFVDLIE+DAASRTKV+DTR+LLDNVQYAP++GR+ Sbjct: 61 SLNCEQGVSSTPCGVCQSCTEVDSGRFVDLIEVDAASRTKVDDTRELLDNVQYAPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFL ATTDPQKLPVTILSRCLQF+L+ L++ Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSRCLQFNLRRLEL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L ++L +E I EP AL+ LARAA+GS+RDALSL DQAIA G G+V++++V M Sbjct: 181 TQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAIAFGGGEVTSESVFQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ DQ + +++A+++ +G+ ++A E AA G ++ + +L L +IA +QL P Sbjct: 241 LGSISQDQLILILDALLKQDGKALLAQSAELAALGRDFHVVFDFLLSALQQIATLQLVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++ ELA P IQL YQ L G+++L +A D + G +MTL+R L+F Sbjct: 301 --LEPVEANSPQLTELAAQFDPETIQLLYQIALHGKRDLSWAADPKSGFDMTLMRMLSFQ 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P + P V +P + + + + + + A + Sbjct: 359 PTTPPEVGDEPLKKSPPPRKPVVSSPPASEAMTTKSVSVSTSPAVKQALIEPDIAPKPQI 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + ++ A ++ + + ++ + + Sbjct: 419 KPDVIAANEPEPIDNTLISVDLSPANWTQIIAELKLSALAHQLAENSALVKCEQQSVYLS 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ-VSQLSLPKLVEQV 539 +P + + + L+KAL + +L A + V + + +Q Sbjct: 479 LSPELGHLATDNSKQKLQKALSKKLGQDLKLVFADADTTFETGPTLAVERAEQQAVKQQQ 538 Query: 540 ALNAW 544 A+ + Sbjct: 539 AIESI 543 >UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clostridium RepID=C9XIC8_CLODC Length = 545 Score = 365 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 226/377 (59%), Gaps = 2/377 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L R +RPQ F DV+GQ+H++ L N + I HAYLF GTRG GKTS A++ ++ + Sbjct: 2 HKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC I PC C+ C + + +D++EIDAAS V+D R+L ++V+Y+PA ++KV Sbjct: 62 NCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATT+P K+P TILSRC ++ K + V+ Sbjct: 122 YIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +++ I +E I + +AL L+AR ++G+LRDALS+ DQ ++ G+ ++ + V ++G Sbjct: 182 MTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 +++ +Q L + +VE + ++ + ++NE G + L+ +++ + + ++S Sbjct: 242 SVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELD 301 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +++ ++ I D+ L I + ++ + + R+ VE+T+++ Sbjct: 302 EIISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIAQPM 361 Query: 361 PRMPLPEPEVPRQSFAP 377 ++ Sbjct: 362 FDESKEALIKRVENLEK 378 >UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 Tax=Nostocaceae RepID=B2J7Q6_NOSP7 Length = 707 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 169/617 (27%), Positives = 265/617 (42%), Gaps = 44/617 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RP++FA++VGQE + T L N + +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC TA PCGVCD C+ I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLKSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L I ++E+I P A+ L+A+ ++G LRDA SL DQ G V+ V Sbjct: 181 QLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLA-GVVTPDRVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ + L L+ A+ + E V+ ++ RG E L + + + + + Sbjct: 240 DLVGTVSEQDLLGLLNAIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + E A+ T I + L ++ + R+ +E+TLL Sbjct: 300 PNRHDLVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L T P P AP+ P P V Sbjct: 360 L------------------------PSATTNIQPQAPNIAPRVIPPAVSPSYPPAVTQNH 395 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + ++ A+ + VT + A + Sbjct: 396 AVSSLPVAEPQTNHNSTLRQGSVTTNHHVAIAQNQPVTSSGAVEQQKNHNSAANSVSPPT 455 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 PV T + + +A W ++ L Sbjct: 456 PEPVAVPVPSAIVEAVTSEVVGEAQY---------------DLTQVWQQVLANLQPKSRQ 500 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 E + + E D + + + + A +++ I + + Sbjct: 501 EMLRQMSQLIEFDGVMARIAIKQAWYDKGKSYLPMITAAFQQTFQREIQINIEKGISSNS 560 Query: 597 RTPLEWRQAIYEEKLAQ 613 + + ++ Q Sbjct: 561 TSAKKNPPPKDSSRVQQ 577 >UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUH2_9FIRM Length = 577 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 146/597 (24%), Positives = 255/597 (42%), Gaps = 41/597 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RK+RP F ++GQE ++ +L N + + HAYLFSGTRG GKTS A++ A+ + Sbjct: 2 YKALYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE I PC C +C I VD++E+DAAS V+D RDL D V Y P ++KV Sbjct: 62 NCEHPIDGNPCNKCKSCLSILNNTSVDVVEMDAASNNGVDDIRDLKDKVIYPPTFLKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLK LEEPP H+ F+LATT+ +K+P TILSR +F + +E Sbjct: 122 YIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSLEN 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I E + QL+A+ ++G++RDALS+ DQ ++ +S + +LG Sbjct: 182 IIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L A + + R +++I++ A +G ++ +L ++L + + +V+ Sbjct: 242 ISSSESLFELTSAYLNKDAARAISVIDDIAIQGKDFLSLNNQLLKHMRDLMLVRTLKNPE 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + +E A T +I L + L YA + R+ +EMT ++ Sbjct: 302 NLVYSTYLKDFKEQAATCDLDNILDIIDELKDLQVNLKYAENPRILLEMTSIKICNKKNF 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 L + + S + L + + + Sbjct: 362 KSLQLNLDNLSK-----RVEKLEFLGSLTKESSNNKNIYRQSLEKPNENDIINLNSDMKS 416 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + K S+ + N + + Sbjct: 417 ENEVLEKSSQSDPLSVKTEEN--------------------------------SDYNRSI 444 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 +++ + + + L +TPE + + + + + ++ LV + Sbjct: 445 DEDKKEYHKNSLENIDDQLVDNETPEKSLGINDIKKDWNEILNDLKAVNQVPLVGLLNDA 504 Query: 543 AWKEESDNAVCLHLRSSQR----HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + + N + + L G +++ I D+ Sbjct: 505 KPLSFENGTLNICYGPGHEFHLKSTNEPKRLEIIKSVLKKRYGMDIDVKISIADDTT 561 >UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 Tax=Clostridiales RepID=A9KQC7_CLOPH Length = 522 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 233/426 (54%), Gaps = 8/426 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP TF DV GQ+H++T L N + RI HAYLF GTRG GKT++A++LAK Sbjct: 1 MSYMALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC C C+ I+ +++IEIDAAS V++ R++++ V+Y+P G + Sbjct: 61 TVNCEHPIDGNPCNECAMCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPTEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 ++I +L I +E I E +AL+ +ARAA+GS RDALSL DQ IA GQ ++ V Sbjct: 181 DEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYFGQSLTYDNVLD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LGT+D + L+ + + + +A++ E +G E ++ L + + + S Sbjct: 241 ALGTVDIEVFARLLRYIRKGSVTDCVAILEELIIQGRELTQFTIDFTWYLRNLLLAKTSE 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + +++ A++ + + + ++ YA +R+ +E+ L++ Sbjct: 301 DMEEILEMSSDQLQLLKQEAQSCDTELLIRFIRIFSELSNQVKYATQKRVMIEVALVKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAP-----TAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 Q T+ P + A + + V LP+ S Sbjct: 361 KPAMETDYASLIHRIQVLENRLEEGVFVTSKDEIEGAVPVVEKAKKASVPVELPKAVSAD 420 Query: 413 LAARQQ 418 L + Sbjct: 421 LQEVAR 426 >UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5L2_9PLAN Length = 715 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 181/643 (28%), Positives = 277/643 (43%), Gaps = 9/643 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ F +VGQ V AL N ++ GR+ HAYLF+G RGVGKTS AR+ +K L Sbjct: 42 YMVVARRYRPQDFTQLVGQAQVSQALGNAINTGRVGHAYLFTGARGVGKTSTARIFSKAL 101 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G T PCGVCD CR + G VD+IEID AS +++ R L V P+R RFK+ Sbjct: 102 NCVNGPTTQPCGVCDICRGVASGDDVDVIEIDGASNRGIDEIRQLRSGVNIRPSRARFKI 161 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TT+ K+P+T+LSRC +F L + Sbjct: 162 YIIDEVHMLTTPAFNALLKTLEEPPEHVKFIFCTTEADKIPITVLSRCQRFDFAPLPSQA 221 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I EH+ EP AL +LAR A GS+RD+ SL +Q ++ G Q++ V LG Sbjct: 222 ILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSYGGKQITVDDVHRALG 281 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 T + +L+ A+ + + I+ AA G++ L ++LG L ++ + ++ Sbjct: 282 TAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAEQLLGYLRDAMVLSVGASSD 341 Query: 303 GNDMAAIELR--MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +R LA + Q + L + R VE+ ++R + Sbjct: 342 MLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHGRTLVEVAVVRLCSLG 401 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + +S AP+ T A P + Sbjct: 402 QLDMLADLVAQLKSGAPLPAIPAGTAAAPRAALPPTSLPAAAPSGPPAQKKTAELAPPPP 461 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A PV AA A R P +A PA+ +Y Sbjct: 462 SLAPPAPVAAVSRPTPPVAPPVTRAAEAPRAVEPIRPAPPPRATAAPTTPARSSSYVDDG 521 Query: 481 TT---PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 P +AT + ++ + + D W +S + Sbjct: 522 EIYEGPSASDLAELATISGSRTSVAPAPVETVRPAPSRLEDASDLWQQVLSTVPEMLAEF 581 Query: 538 QVALNAWKEESDNAVCLHLR----SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + + + ++ + + ++ L A+ G + L + + Sbjct: 582 ASKATQTAISAPDRLVVRFPKAYTQAKEYCDRPEKRRDLERAIDQAAGRKLRLELELTAD 641 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 V P+ Q + I+ F AE+ Sbjct: 642 SVVAGPIPSAPQQPRMSRRQRMIDVHRKPIIRQAIEIFGAEVI 684 >UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLY2_ACIFE Length = 671 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 168/597 (28%), Positives = 250/597 (41%), Gaps = 31/597 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRPQ F D+VGQ + AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MAYVALYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PC C NCREI +G D++EIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTAHPCNQCSNCREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+ TILSRC +F + V Sbjct: 121 KVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFDFRRATV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I LE + HI EP AL+L+A A+G LRDALSL DQ V+ + V + Sbjct: 181 DEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMAS-PVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ LV + + N + + + +G E E +L E+L + + Q Sbjct: 240 LGLVGREKLRELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYFRALLLYQADRE 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E A + I + + +E Y+ +++ E+ L + Sbjct: 300 YQEIYLTDTREALAETASLFTSSQIVASVERIHEAIRESKYSLRKKIVGELCLFDLCE-N 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 S P + P V + V Sbjct: 359 RGNTEAALLARIDSLEQQVAALRQGNGTAPTFVTAVPAAPAAVQAVSASRPVP------- 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + Q Sbjct: 412 ------QGPVPATPGPSAPPTGGTVRDAFARMAAAARQEISQEPPAPAPAEPAPVPAPAP 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + A P+ E + A + W + L + + Sbjct: 466 LPEARPEAGPAAAPEG-----------EPQFDGSGRAQAQQLWQLVLQGLKQRRKRTFLV 514 Query: 541 ---LNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + + D + L + S+ + + + + L G ++ L +V+ + Sbjct: 515 YAEMARAADYQDQELLLGVSSAYGKEKMEEPAFRNLIQDILKGAVGQSIRLRVVQQE 571 >UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=Q6FAW7_ACIAD Length = 711 Score = 363 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 239/711 (33%), Positives = 340/711 (47%), Gaps = 73/711 (10%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL + L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETGIT+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E I + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + RV L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +LA+ + D+QLYYQ GR EL + + G EM +LR LAF P Sbjct: 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT----------SQV 412 + + + S + T E SQ Sbjct: 362 SIDEVTVHASSQPSELQINQLPPAADSETDSSSRSELQHTNNRIEPDLEGSVVISVISQE 421 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + + Q V T ++ + E+ + + + + A Sbjct: 422 AESFEAEQVVNHTTDDCQTAKTRQNKDVSSAVVEAEQENILVFNANSDDIVGIEQNKTAV 481 Query: 473 KEAYRWKATTPV--------------MQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 A + PV ++ A + + + +++ ++ Sbjct: 482 VLAAQDMPFFPVEEERQIANHQHIALPAERVEQADTYQPEPHQVTQPISDSSSEESSLDA 541 Query: 519 ERDPWAAQVSQLSL----PKLVEQVALNAWKEESDNAVCLH------------------- 555 D + + LS+ K+ A N + + + L Sbjct: 542 LADDESTPLIDLSIDTNEHKVQVTSAANDLEVMPQDILKLAEQELEGEWTLEKWEYWFRT 601 Query: 556 --LRSSQRHLNN--------------------RGAQQKLAEALSMLKGSTV---ELTIVE 590 L + + L G +L AL S + T+ Sbjct: 602 SQLSPAVQELAQYGLMSGNIDGICTFNIPQQYEGMLSQLQHALESEVKSRWPNTQFTVKY 661 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 TP + E+ +A + + + ++ L FD +L ++ Sbjct: 662 GKV-NEITPYIKQIERKEKAFQRAIDLLQQNPVVKDLLNTFDGQLQNIQLK 711 >UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 Tax=cellular organisms RepID=A9BMI7_DELAS Length = 731 Score = 363 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 247/732 (33%), Positives = 349/732 (47%), Gaps = 94/732 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F+++VGQEHV+ AL N L+ R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYLVLARKYRPRNFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNCET-----GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC+ GITATPCGVC C EI+ GRF D E+DAAS V++ + LL+ Y P Sbjct: 61 SLNCQGADGQGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 +GRFKV++IDEVHML+ +FNA+LKTLEEPPE++KF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + + E + L +L +E +A EP+AL+LL+RAA GS+RDALSLTDQAIA G GQ+ Sbjct: 181 RPMAPETVLEHLGQVLGQEGVASEPQALRLLSRAARGSMRDALSLTDQAIAFGSGQLQEA 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG++D L+EA+ +A+G+ V+ G+ + L EM +L R+A+ Sbjct: 241 TVRQMLGSVDRSHVFRLIEALAQADGQVVVETSEALRRNGLSAASTLEEMCAVLQRMAVA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q P + + LA +P + QL Y L GR EL APD + M LLR Sbjct: 301 QAVPQMAADASDPEAAEIARLAVLMPRDETQLLYSICLHGRAELGLAPDEYAALTMALLR 360 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA- 414 LAF P+ P P + + P+ + P Q A + Sbjct: 361 LLAFKPQSAEPAPGAAEKKTPALTPSTAKPESPAPVAQARPAQPAVPEAPAAPAKAAMPV 420 Query: 415 -------------------------------------------------ARQQLQRVQGA 425 L VQ A Sbjct: 421 PVAPPAPVAPVAPAASPVTAAPAVVAPVVQAVAAAAPVQAPVAVAAVARPEPVLAPVQEA 480 Query: 426 TKAKKSEPAAA----------TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + E A PV++ + +S + QA+ + E A A Sbjct: 481 RPSAAPEVQPAARVAQGPLDEPVDEPVDDVQEDEDSSADEAPQAQDADAPDEGAWAGMPD 540 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPE-------------------LAAKLAAE 516 W ++ P A A + E + A Sbjct: 541 EGWADEGRWSDDGDLALEPPAAAVARQAEPQIDTQIDVQDFAPERGRHSPGAPPAPTVER 600 Query: 517 AIERDPWAAQVSQL----SLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQK 571 E D W A V QL ++ L Q+AL + +A L + SS L +++ Sbjct: 601 TPEGDVWHAAVQQLVQAEAVTALARQLALQSQLVARDGDAWTLRVESS--SLAQPATRER 658 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L AL G +L + + V +P E+ A + ++ + +QTL R Sbjct: 659 LRAALEAA-GLARQLHVEQGAV--VDSPARRNAVASHERQRIAEDIVMNHSLVQTLIRSH 715 Query: 632 DAELDEESIRPI 643 A++ SI+P+ Sbjct: 716 GAKIVPGSIKPV 727 >UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E6B7 Length = 834 Score = 363 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 264/694 (38%), Positives = 360/694 (51%), Gaps = 54/694 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+TA++N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPNKFSELVGQEHVVTAISNALDNNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG++A PCG C CR+IEQGRFVDL+EIDAASRTKV+DTR+LLDNVQY P +G + Sbjct: 61 SLNCDTGLSANPCGECGTCRDIEQGRFVDLLEIDAASRTKVDDTRELLDNVQYRPTQGDY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI+ QL H+L +EHI HEP AL LARAA GS+RDALSLTDQAIA G+ Q+ST VS M Sbjct: 181 EQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSLTDQAIAQGNNQISTVVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ +M+E + V + A + +L E++ LLH+IAM Q+ P Sbjct: 241 LGLMDKNQILKILHSMIEGDKIAVFEQVESLAQTSPNYAHVLDELMSLLHQIAMTQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + +LA +I +QL YQ L G+++LP++ D R G EM LLR LAF Sbjct: 301 VCKLETISARA-IYKLAGSISKEHVQLLYQMALNGKQDLPHSMDGRSGFEMVLLRMLAFT 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ ++ V +P+ + + P + + + Sbjct: 360 PVTPIDGFVDIIKTDMQNHIAEVGEMVTFAAEPEVVSPEPTILEAPVIEQEPKSTTNPMI 419 Query: 421 RVQGATKAKKSEP---AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + A K + R + + V A + Sbjct: 420 ESESAVDPKAQPETIVPYQSEVREEIDPEPTTAPEPVKEPVSVIVEDEENSAEKVDFSAV 479 Query: 478 WKATTP--------------------VMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + + +A E + L EA Sbjct: 480 MNDMFSEPEPEPEPEQPQVSVSTLQGPDESAMFQEQAEIMHEAHEMHPSQFDEQSLPPEA 539 Query: 518 IERDPWAAQVSQLSLPKLVE----QVALNAWKEESDNAVCLHLRS----SQRHLNNRGAQ 569 D ++ + + + + VA NA + + L+ S S L + + Sbjct: 540 YMNDDYSDVPIDVQVEQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKASI 599 Query: 570 QKL---AEALSMLKGS------------TVELTIVEDDNPAVR---TPLEWRQAIYEEKL 611 KL ++ KG ++L V D TP+ I E Sbjct: 600 NKLDSETPIVAEHKGESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTEPE 659 Query: 612 AQAR--ESIIADNNIQTLRRFFDAELDEESIRPI 643 QA D + L ++EL + +++ + Sbjct: 660 VQAESLSQPERDPSKMGLVD--NSELVKVTVQKV 691 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 98/297 (32%), Gaps = 6/297 (2%) Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E + + P E E Q + +P L E Sbjct: 538 EAYMNDDYSDVPIDVQVEQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKA 597 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAAT----RARPVNNAALERLASVTDRVQARPVPSA 465 S + + ++K + V ++ + T + A + + Sbjct: 598 SINKLDSETPIVAEHKGESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTE 657 Query: 466 LEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 E + + + K ++ + A + D W Sbjct: 658 PEVQAESLSQPERDPSKMGLVDNSELVKVTVQKVDVQGLQAILPNGDKLTSAAQIDEWTN 717 Query: 526 QVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVE 585 + QL+L L +Q+A++A + V L L + HL+N + LAEALS+ +++ Sbjct: 718 VIGQLNLTGLNKQLAIHASFSREGDVVTLLLGQDKAHLHNETSVNALAEALSVFFDTSIT 777 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 L + + + TP + I + + A+ + ++ +Q L+ F + +++P Sbjct: 778 LQVSFGEP--INTPYALQMHINQIRNEYAQSILNSNPELQKLQSTFGTSVVSGTLKP 832 >UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Tax=Veillonellaceae RepID=C9KLC0_9FIRM Length = 631 Score = 362 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 241/473 (50%), Gaps = 3/473 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRPQTF D+VGQEH+ LAN ++ G I HAYLF+G RG GKTS A++LAK Sbjct: 1 MAYIALYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCG C+ CR+I G +D+ EIDAAS +++ RDL + V++AP GR+ Sbjct: 61 ALNCEHGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TI SRC ++ K + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L +I E + E AL ++A A+G +RDALS+ DQ A +G ++ + V + Sbjct: 181 EEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D + +A+ N + + ++ E G + + +L E+ L + + Q + Sbjct: 241 LGLVGHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLRSLMIFQAAGT 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A + +++ A+ P + L E+ ++P R+ VE+ L+ Sbjct: 301 VEAMDLYAEPQDVLQDQAKLFAPEVLPRMIARLHEAMTEMKWSPQPRITVEVALMELCRP 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ--VLAARQ 417 E S P A ++ + ++A Q + T A Sbjct: 361 ELVASTQENAGQAASNGPRAASSNPADEARIAKLEAALAQVTALLKQATAGAGVRPAVAP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A + A A A + Q KAP Sbjct: 421 ATGVPTPAPAPAAAPAVTPAPADVPEEPAALDEAGLQVWNQLFQSLREQHKAP 473 >UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteobacteria RepID=Q1NUY3_9DELT Length = 706 Score = 362 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 169/705 (23%), Positives = 280/705 (39%), Gaps = 76/705 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+TFA+VVGQ V+ L N L L R+ HA LF+G RGVGKT++ARL+AK Sbjct: 1 MSYLVLARKWRPRTFAEVVGQRPVVRTLQNALRLQRVAHAMLFAGVRGVGKTTLARLMAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC+ + PC C +C+EI G VDL EID AS +++ R+L +N+++ P Sbjct: 61 ALNCQEPEPASRPCNQCKSCQEINAGAAVDLHEIDGASNRGIQEIRELKENIRFLPVSAS 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+ +IDEVHML+ +FNALLKTLEEPP HV F+ ATT+ K+P+TILSRC ++ L + Sbjct: 121 YKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILSRCQRYELTRVA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ + E + AL +++R A+GS+RD LSL DQ + DG + V Sbjct: 181 YDELLAFFRQVAAREEVTISEAALAMISREADGSVRDGLSLLDQVFSFADGGIDDDDVRQ 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D L A++ R + + + G+ + ++L + + + + Sbjct: 241 LLGLVDRRVFAQLARALLAGELGRALEIFDRGQRAGMNLKRFAADLLDYFRNLVVCRATA 300 Query: 300 AALGNDMAAIEL--RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + E+A P + + LL G +E+ YA ++ +EMT++RA+ Sbjct: 301 GARQLLELGEQELVELEEIAAAHSPETLLYCFNLLLKGIEEMQYASRPKLVLEMTMVRAV 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +P E P P+P + + +T + + Sbjct: 361 EAGQIVPTAEALGRLDQLLAGLPAEEQIAVAATPRPTARGEGKAAPGGGDTAVEAYQKPE 420 Query: 418 QLQRVQGATKAKKS--------------EPAAATRARPVNNAALERLASVTDRVQARPVP 463 + G + + + EPA + + + +R Sbjct: 421 EAAVTAGIGEPEPALAVSDHGAPHLAAIEPAHVPMYASPSRLPQDAVPRDRLPRGSRDQL 480 Query: 464 SALEKAPAKKEAYRWKATTPVMQQ------------------------------------ 487 A E + Q Sbjct: 481 PLAGVATDPGEPEPELSGADTGQAPAAAGGPEPPPAAPASPKSPATSATPTEPPPEPTPE 540 Query: 488 ------------KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK- 534 A +K + + R W V + K Sbjct: 541 PTPKPTPKPPPESPAGQQTGDEAPAAGVDKAAAVKGRSREGRDLRRQWDDFVRYVRQRKI 600 Query: 535 -LVEQVALNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + + + A E + + L + L + L E +++ + Sbjct: 601 WMASVLEMVAGIREENGELRLRYDDPADCKLLEETENSRLLTEFAQDFFQRELKVRLRIR 660 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + E + R ++ D +Q + F+ E+ Sbjct: 661 GGDSKEVAA-------NELPREERRALAGDPLVQAVTEIFNGEVV 698 >UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcineae RepID=C7NGE4_KYTSD Length = 796 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 163/619 (26%), Positives = 254/619 (41%), Gaps = 30/619 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RPQ F++VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T +PCG CD+C+++ +G VD+IEIDAAS V+D RDL + + PA+ Sbjct: 60 CLNCEQGPTDSPCGECDSCQDLARGGAGSVDVIEIDAASHGGVDDARDLREKASFGPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++ FNALLK +EEPPEHV F+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 ++ L + E I EP L + RA GS+RD++S+ DQ IA D ++ Sbjct: 180 PPAVLQEYLAQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLIAGSDDAGITLAGT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +V+A +G + + G + + ++ + + +V Sbjct: 240 TALLGFTDSELLDGVVDAYAAGDGASLFTTVERVVESGQDPRRFVEDLSERMRDLILVNA 299 Query: 298 SPAALGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P + R+R A + P ++ L G E+ A R+ +E+ + Sbjct: 300 VPTGTEAVLPGVPSDQLDRLRVQASGLGPAELSRASDVLFHGLAEMTGATSPRLQLEIIM 359 Query: 354 LRALAFHPRMPLPEPEVPRQ-------SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 R L + A P Q A Q +P Sbjct: 360 ARLLLPRAAGEGGFAARLEKVERWMAFRGDASAGGTAGAQAGAPAQEAPASQGSPVAQSA 419 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 A +Q+ R Q + ++ + Q A Sbjct: 420 PAVPAAAAPQQEQSRAQEPARRDQTPRDEQREQEQPARQDRTPQGEERAQEQPAAPQPAA 479 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE----------HEKTPELAAKLAAE 516 E+AP + + E + A Sbjct: 480 EQAPPVPDEPPADMWEAEEAAAAAGPDSAGDRTPEPGAPQQAQQAAPEGSSSPGAAPVPL 539 Query: 517 AIERDPWAAQVSQLSLPKLVEQVALNAWKEESD---NAVCLH--LRSSQRHLNNRGAQQK 571 R W + +L V ++ + D + L + + + Sbjct: 540 ETLRHEWPTVLDKLKDISRVTWALVSQSMQVQDLSSEGLTLATEVAPIAERFSRGENADR 599 Query: 572 LAEALSMLKGSTVELTIVE 590 +A A+ G + V Sbjct: 600 VAAAVQEALGFHPRVRCVV 618 >UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 Tax=Alkaliphilus RepID=A8MKQ3_ALKOO Length = 563 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 239/470 (50%), Gaps = 2/470 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R++RP+ F DV+GQ+ V+T L N +S I HAYLF+GTRG GKTS A++ A+ Sbjct: 1 MSYKALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + A PC C+ C I +D+IEIDAAS V++ R++ +NV+Y P++G++ Sbjct: 61 AVNCLSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYPPSKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TILSRC +F K + + Sbjct: 121 KIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE I + I E AL+L+A ++G+LRDALS+ +Q I+ + ++ V + Sbjct: 181 NDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG ++ + LV+ + + V+ LIN+ G + L+ +++ I + +++ Sbjct: 241 LGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQ 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + R+R+ I + L +L Y+ + +E+ ++ + Sbjct: 301 LDELLTLPEERQDRLRQQGALFTINQITSFIYNLSDIESKLKYSAQPKTLIEIGIVGLCS 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L Q + + + Q + Q + + + +Q Sbjct: 361 KALDDSLEGLIERVQDLERKLASGNIKVEPHYNKSQISTPQNRSSHKTQPIEEKQEYKQP 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 + + P+N AL+ + + ++ Sbjct: 421 ESSPPSVDANESTAEEPVHSGAPLNFDALKESWQQILEELRKEKKAQIQA 470 >UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZS6_UNCTG Length = 531 Score = 361 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 139/398 (34%), Positives = 220/398 (55%), Gaps = 3/398 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F +VVGQEH+ L N +S RI HAYLFSG RG GKT++AR+LAK Sbjct: 1 MAYLVLARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G T PCGVC+NC EI + VD++EID AS ++D R L +NV+++ A ++ Sbjct: 61 ALNCKNGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDE H ++ +FNALLKTLEEPP HV F++ATT+ K+P+TILSRC ++ K + Sbjct: 121 KIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ ++ I EE + AL ++ A+ GS+RDALSL DQA++S G+++ + + Sbjct: 181 AEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D +S+ + + + + ++ ++ E +G ++ L + + ++P Sbjct: 241 LGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHLRNVMIYSINP- 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ + + + L +E+ + R+ +EM LL+ + Sbjct: 300 AIAEISSEDKKIFDVQKSLFTVSRYVRMNNLLSKALEEMRWHDQPRILLEMYLLKMSEPY 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 + E T + QP + Sbjct: 360 YDVG--ELINKITDLERNFRTCGNSQLPFEKQPAVRSE 395 >UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 Tax=Bacteria RepID=C9L9Q0_RUMHA Length = 538 Score = 361 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 234/431 (54%), Gaps = 11/431 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++LA+ Sbjct: 1 MGYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PC C CR I +G +++IEIDAAS V++ R++ + V Y P G++ Sbjct: 61 AVNCEHPVDGSPCNTCKTCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 + I +L+ ++++E E +A++ +A+AA+GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGEKLTYEKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV--QL 297 LG +D ++ +++ + + ++E +G E + + + L + ++ Sbjct: 241 NLGAVDTQVFSRMLRQILQQDTAGTIKTLDEIIIQGRELGQFVTDFIWYLRNLLLISTSE 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + A RM+E + + + Y + ++ YA +R+ VE+ L++ Sbjct: 301 HPEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELSNQIKYASQKRVLVEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M L + V QS P + E + + + Sbjct: 361 QPVMEMNLDSLYDRVRVLEEKLKNGVTV--------QSLPTENYVRTRAENPEEQILKEE 412 Query: 418 QLQRVQGATKA 428 ++ + A + Sbjct: 413 TVKPEKAAPED 423 >UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 Length = 553 Score = 361 bits (925), Expect = 6e-98, Method: Composition-based stats. Identities = 144/397 (36%), Positives = 230/397 (57%), Gaps = 2/397 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R+WRP+ F+DVVGQ H+ L N + R+ HAYLF GTRG GKTS+A++LAK Sbjct: 1 MSYTTLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C++I QG +D+IE+D AS+ K+ED +D+++NV+Y P G++ Sbjct: 61 AVNCLDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML++ + NA LKTLEEPP +V F+LATTDPQKLPVTILSRC +F + + Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++L I+NEE I + R+L L++R +G++RDALS+ DQAI+ G G+V ++ M Sbjct: 181 SEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--S 298 LG + ++ L ++++E N E M +I++ G + + EM+ L + MV++ + Sbjct: 241 LGLVTNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +++ A+ I +I + ++ + R+ +E+ +++ Sbjct: 301 PEEILDISEENIELLKKQAQKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMCK 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 M + Sbjct: 361 IEYDTSKEIMLSRLNKLEEAFKQGGMKIFHEKIPSKE 397 >UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Bacilli RepID=Q1WSU3_LACS1 Length = 579 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 157/591 (26%), Positives = 281/591 (47%), Gaps = 25/591 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQE V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I +GR D+IEIDAAS VE+ RD+ D V+YAP + Sbjct: 61 AINCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TI+SR +F K + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I ++ +IL+++++ ++ +AL+++A+AAEG +RDALSL DQ I+ GD V+ + Sbjct: 181 ESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + ++ ++ + + I + +G + L+ +++ + + Q +P Sbjct: 241 TGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPE 300 Query: 301 ALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + ++ ++ + +EL++ I T + L ++ + ++ + + +E+ Sbjct: 301 MVSDGELGLLDDKFKELSQQINVTQLYQIIDELNKQQENMRFSSHQSIYLEVL------- 353 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 V + + ++ + + + S ++ Sbjct: 354 ---------TVKLTQLSTNSEADRVSNVDLSQIELLKQKIENLQRKVDNLSSNTVQTEKN 404 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + ++ + ++ A+ + + V L + + Sbjct: 405 NEPRKQVRKNTTKGQKNVKINLSQVYSVLNNATRQSLNELKQVWPDLMNMLSVTQRAIMH 464 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV--E 537 + PV + V + A +K E + D +V L L + Sbjct: 465 VSEPVAASENGVV--VGFEYAFLCQKALEDQELIDTLENGLDRLIGKVPSLVLIPVENWP 522 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGA----QQKLAEALSMLKGSTV 584 ++ N K+ + AV + +S++ +N Q + + L G+ + Sbjct: 523 EIRSNYLKQRKNGAVVIADDTSEQSQDNDDQSASTQPTIIQKAEELFGTDI 573 >UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W2_EUBE2 Length = 561 Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats. Identities = 136/372 (36%), Positives = 217/372 (58%), Gaps = 6/372 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RKWRP F DV GQ+ ++T L N ++ RI HAYLF GTRG GKTS+A++ AK Sbjct: 17 MSYQALYRKWRPDNFNDVKGQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAK 76 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PCG C C+ I G +++IEIDAAS V++ R + + VQY+P GRF Sbjct: 77 AVNCEHPVDGNPCGECPTCKAIAAGTSMNVIEIDAASNNGVDNIRQIREEVQYSPTEGRF 136 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 137 KVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRYDFHRITI 196 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E I +L ++ E + E +A++ +A+AA+GS+RDALSL DQ +A + + V Sbjct: 197 ETIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYLGKDLKYENVLD 256 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D ++ ++ + M+L+ + +G + + + + L + +++ + Sbjct: 257 VLGAVDTAVFSKMLSTILSGDVAVCMSLMEDLIMQGRDLSQFVTDFIWYLRNLLLIKTTK 316 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A + A +++ A+ + + Y + L +L ++ +R+ E+T + Sbjct: 317 DAERIEDVIEVSADNLEDLKKDAQNVDIDTLMYYIRVLSELSNDLKFSTQKRVKTEITFI 376 Query: 355 RALAFHPRMPLP 366 + + Sbjct: 377 KLMRPAMDNSQD 388 >UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Tax=Corynebacterium RepID=C3PJQ2_CORA7 Length = 868 Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 273/628 (43%), Gaps = 20/628 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCGVCD+C + G +D+ E+DAAS VED R+L D YAPA R+++ Sbjct: 62 EQGPTSTPCGVCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S NALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 ++ LE + E++ + ++ +A GS RD LS+ DQ +A +G ++ +L Sbjct: 182 MKGLLERTVASENVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGAGPDGLTYDVARPLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D+ + +EA+ + + L+++ G + +++L L + ++Q P+A Sbjct: 242 GVTDEGLLDNTIEALASQDKAGLFRLVDDVIEAGHDPRRFAIDLLDRLRDLMILQAVPSA 301 Query: 302 LGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A+ + +T+ L A R+ +E+ + Sbjct: 302 LEEGLVSAPTDRGEVLTAQAQRFSGPQLAYLAETVNERVSSLRGATSPRLLLEILCAHLI 361 Query: 358 -------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 A ++P P+ + A + SA A Sbjct: 362 VGAAPAAAAAGQLPTAAPQGAGAQPSAPAGQPTAPAQRQQSAVASAQDPAAAAAAIIAQR 421 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + A +Q + Q + + A + + ++ + E P Sbjct: 422 RSRQAAKQEAQQQQPLQQPQQAEKAQEAVQQAQQTPAPEDSQPQVPERSAQPEAQPEPQP 481 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + + +Q E + ++ E+ PE A R W+ + + Sbjct: 482 EQPKQRQEQPERQQQEQHEQQQQEQTEQQEQAREQHPEAEQPQDPAAEIRGRWSDLRATI 541 Query: 531 SLPKLVEQ--VALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVEL 586 V + +A D+ + L + +N+ G + + L T+++ Sbjct: 542 GRRNKVAEIMLAEARVLGVRDDTLVLGHTTGALAERINSPGTNEVIVTVLQEELNRTLKV 601 Query: 587 TIVEDDNPAVR--TPLEWRQAIYEEKLA 612 T V +P T E Q Sbjct: 602 TCVIGTDPKAHGFTVTEPVQRTQWNPNQ 629 >UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Betaproteobacteria RepID=Q3SLE5_THIDA Length = 581 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 232/639 (36%), Positives = 325/639 (50%), Gaps = 73/639 (11%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LARKWRP+ FAD+ GQEHV+ AL+N L+ GR+HHAYL +GTRGVGKT++AR+LAK LNC Sbjct: 14 ALARKWRPRAFADLRGQEHVVQALSNALTQGRLHHAYLLTGTRGVGKTTLARILAKCLNC 73 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E+G++ATPCG C C +I+ GRFVDL+E+DAAS T V++ R++LDN QYAP GR+KVY+ Sbjct: 74 ESGVSATPCGTCSACTQIDAGRFVDLLELDAASNTGVDNMREVLDNAQYAPTVGRYKVYI 133 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FN++LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + + Sbjct: 134 IDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKPMTPALVA 193 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L +L +E + EP AL LLARAA GS+RDALSLTDQAIA G G++ AV AMLGT+ Sbjct: 194 GHLGDVLAQERVDAEPAALNLLARAAAGSMRDALSLTDQAIAYGGGRIEAAAVEAMLGTV 253 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D L++A+ +G+ +M A RGI ++A L ++ LL ++A+V +P A+ + Sbjct: 254 RRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDLGNLLTQLALVLHAPGAVED 313 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 A R R A + +QLYYQ L GR++LPYAPD G MTLLR Sbjct: 314 --GADAERTRAAAEKLDAETVQLYYQIALNGRRDLPYAPDEFSGFCMTLLRM-------- 363 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 +A PT P AP + A + Sbjct: 364 -------------LAFAPATDPTPRSPGGGRAPVASADSTPAAAPLAAPAPARVPAAAPA 410 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 + ++ A+ A A+ A A Sbjct: 411 PLQQPEAARQVASAEPLAAEDADSPRAAAAPPDAPFVAAEPAPAAQWDWLAVVAGLRLGG 470 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 M + V+Q ++ Sbjct: 471 MAKMLA-------------------------------DHCELVAQTG----------DSV 489 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQ 604 A L + + ++K G +++T + A +TP + R Sbjct: 490 TLRVGEAHKHLLDRAYQDRLTGALREK--------YGPALQITFEVG-SAADQTPQQVRT 540 Query: 605 AIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I E + A+A +I AD ++ L F +++ +I+P+ Sbjct: 541 RIKEARQAEAIAAIEADPFVRELVEQFGGQVEASTIQPL 579 >UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Bacteroidales RepID=A6LDQ5_PARD8 Length = 586 Score = 360 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 157/643 (24%), Positives = 271/643 (42%), Gaps = 67/643 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ+ + T L N + ++ HAYLF G RGVGKTS AR+ AK Sbjct: 3 NYIVSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS V+D R L+D V+ P G++ Sbjct: 63 INCLNPTADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHML+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + + Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+++ ++E + EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ QAV Sbjct: 183 ADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A++ N + ++NE +G + + ++ + G + + + Sbjct: 243 LNVLDYEYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCRDEST 302 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A+I R +E+A+ P + + + ++R+ +E+TL++ Sbjct: 303 LVLFEVGASIRERYKEMAKHCPDQLLFKAIELANTCDLNYRASRNKRLLLELTLIQLCQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + A P++ + P QP AP P+ S + + Sbjct: 363 TQVAVDDKKKALIEPIAGTNPSSQAVNSGQPQQPPQAPSVTAAAGAPQVMSTHMPSSVPA 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A + K + Sbjct: 423 PPPSTAP-------------------------------------NPARKTARPMGISMKE 445 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 +Q+ V +K+ + W + + ++ Sbjct: 446 IGVEKPKQQTVQQATTNVKEVV----------TPFDNDSLVREWDNYAATIDKKVYLKNT 495 Query: 540 ALNAWKEESDN---AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS---TVELTIVEDDN 593 +N +N V +H Q L N + L + + + IVE + Sbjct: 496 MINCKPTLQENYYFEVAVHNPGQQEELINNAI--HILPFLRQHLNNSRIQMRVRIVEGNE 553 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + + + + LR F+ LD Sbjct: 554 ----------KHLAYTSTEKLELLMKINPTLGRLRDEFNLTLD 586 >UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PXF7_9SPHI Length = 596 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 155/637 (24%), Positives = 271/637 (42%), Gaps = 53/637 (8%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ+H+ L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE CGVCD+C+ + G + E+DAAS V+D R+L+D V+ P G++ Sbjct: 63 INCEHITSEVEACGVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + V Sbjct: 123 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIRV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L I +E + ++ L ++A+ A+G LRDALS+ DQ ++ + Q+S Q+V Sbjct: 183 EDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFSNKQISYQSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D L +A+++ + + ++ RG + + + L + + + Sbjct: 243 LNILDYDYYFKLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGGLSSHLRNLLVTKEPAT 302 Query: 301 ALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 D++ I+ R E ++ + + + ++R+ VE+ LL+ Sbjct: 303 LKLLDVSDNIKKRYLEQSQKVSSGLLLSALNISNQCEINYKTSKNQRLQVELALLKMCHI 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + V S QP S P P+ TS + A L Sbjct: 363 ATAIQMSQNGVLSGSAEVKKKRPDSAVAAPVSQPVSVPAPV-VTPVSIPTSAEIKAPPSL 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + K ++ ++ L ++ + Q Sbjct: 422 AKPVENHPPKLADSGKKGWGAVKVGVSIPNLNTIFEEKQVEESEGPSLVKGEAYREVNLN 481 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL--VE 537 W +L + Sbjct: 482 EFL--------------------------------------QKWNEFAERLKAENKINLY 503 Query: 538 QVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS-TVELTIVEDDNPA 595 + +A + DN + + + ++ + A+ + L + + ++++ V ++ Sbjct: 504 TLMTSAPPKLQPDNLIEVEVENAIQMDVLTSAKIDILNFLRVELQNFSLDVKGVMIEHQV 563 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 R P ++ + + N++TLR+ F+ Sbjct: 564 SRKPYTSQEKYQAM--------VAKNPNLETLRQTFN 592 >UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 Tax=Chloroflexus RepID=B8G7M2_CHLAD Length = 613 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 178/649 (27%), Positives = 285/649 (43%), Gaps = 47/649 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L RKWR QTFA++VGQEHV+ L N ++ R+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MAVQSLYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC +A PCG C+ C I +GR VD+IE+DAAS T VED R++++ VQ+ P+ R Sbjct: 61 AVNCLHPDPSARPCGTCEMCTAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPSVAR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDE HMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 MKVYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V + + I E I A + +ARAA GS+RDAL + +Q + +G ++ Q V + Sbjct: 181 VTSMAAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFVEGPITLQHVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +L+EA++ A+ + +N A +G + +++ L + ++ + Sbjct: 241 LLGMTAAAEVDALIEALLSADLTAALRAVNAVANQGADLRQFARDVVERLRAVMLLNATG 300 Query: 300 AALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 D+ ++ + A+ + + + +L P + +E+ ++ Sbjct: 301 DRTLLDLGDDEVAQLMQWAQRAEMAALVQWVKLFSGLDYQLRTTPYGHLPLEVAVV---- 356 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + P PQ P+VP TTS Q Sbjct: 357 -----------------EALVAPVPVVQPVTPHPHAVRPQSRPSVPASPTTSSARPNIDQ 399 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 A + + +S P+ E + Sbjct: 400 SMAFTVAPALTQPSAPVKPSRATPPPSTEPPTSSPLPATPPVAPPTTPE-------SGVA 452 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 P V A + + +++ A+L+ W + Q Sbjct: 453 PTADPPPPPPAVWAAVQQSRPPVDYPAARAADAELSLLERLEATWEDFKRDVRPRSPTVQ 512 Query: 539 VALNAWK--EESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LN+ + + N + L + S+ L + + E L G T + ++ Sbjct: 513 ALLNSARPYDVEGNTIILLVTSTFHKERLEEPKNRAIIEEVLRRRFGKTYAVRCTIEEKS 572 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P++ R I E + D ++ FDA + I P+ Sbjct: 573 TE--PIDLRAKIREAR---------KDELVRAALNIFDAHIV--GIEPL 608 >UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYU5_HALNC Length = 591 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 247/642 (38%), Positives = 342/642 (53%), Gaps = 59/642 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++FA++VGQ HVL AL N L R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFAEMVGQGHVLQALTNALDQSRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++TPCGVC C EI+QGRFVDLIE+DAASRT V+DTRDLL+NV YAP RGRF Sbjct: 61 ALNCEHGISSTPCGVCSACVEIDQGRFVDLIEVDAASRTGVDDTRDLLENVAYAPVRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHM S+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+L+AL + Sbjct: 121 KIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLRALPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +L +E+IA EP AL L+A AA GS+RDALSL DQAIA G++ T VS + Sbjct: 181 SQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLLDQAIAFTGGKLDTVQVSQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +++A+ + + +R+ AL++EA R +E LL + + +H++AM Q + Sbjct: 241 LGLSDHQIIWDMIDALYQQSADRLFALVDEALDRAVEPAILLAQFIESIHQLAMGQWIQS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++I P +QL+YQ GR+++ ++P+ R+G+EMTLLR LAF Sbjct: 301 MSAAANPPPDEL-----KSIDPQLLQLWYQIATTGRRDMAWSPNARIGLEMTLLRMLAFQ 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V A V P + +V +T + +A+ Sbjct: 356 PGGEASNGAVKATEPAAVHSY---------------PSDSRSVSAAKTKPERVASSITQP 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + TKA+ + A A P+ + V + + + + Sbjct: 401 ESEPETKARLQKSAEHRVAEPMVAQTMPVQDKSDHDVPDHSGHARAQLTDLPWHEWVERI 460 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + ++ P+ A A E Sbjct: 461 PGQPGRNLADRCHINIVDGQIQLVVAPQYEVIANARARES-------------------- 500 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 L + + + + + Q + A +++ A TP Sbjct: 501 LLSQLSKLADTSKVKIIIGQNDTASDRATSEISA-------------------QAAITPA 541 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 E R Q R+S++ +Q L+ A+L EESI P Sbjct: 542 ERRNQEEINLQQQRRQSVVQHPVVQLLQEQAGAQLVEESILP 583 >UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8F3_MAGSM Length = 605 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 198/642 (30%), Positives = 296/642 (46%), Gaps = 42/642 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VLARKWRP+ F D++GQEH + AL + L GRI HA+LF+G RG+GKT+++RLLA Sbjct: 6 SYVVLARKWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMC 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC TG+TA PCG CD+CR I +G D+ E+DAASRTKVE R+LLD V Y P+ R+K Sbjct: 66 LNCGTGVTANPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS SFNALLKTLEEPP HVKF+ ATT+ +K+ TILSRC ++ L+ LD + Sbjct: 126 IYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDRD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L H+L+ E IA++ L ++ AA+GS+RDALSL DQAIA G G+V VS +L Sbjct: 186 GLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLLDQAIAHGGGRVDYTHVSGLL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D ++L + ++ G+E LL ++L + H++ Sbjct: 246 GLTDRQAVVALFADLCRGRLLEMLERAAYFHRDGVEPVVLLNDLLDITHQVTRELAVGVG 305 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + ++E+ + +Q+ YQ LL GR++L A R +EM LLRA P Sbjct: 306 DAAQALSEHEGLKEVWPKLGLEHLQMLYQVLLRGREDLQMARLPRQALEMLLLRAAHLRP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 PL + Q A V Q A ++ + ++ Sbjct: 366 VPPLKQLVESLQRQAGV--------EPGERQASPAVKKFDAPGVGQSEVAPTVHFAPKSA 417 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 A +A ++ + +P A + V A P + ++ Sbjct: 418 ALEAPQAVQAPQVKRAKKQPTVLAPEPQPPVVPPDWPAVPPLQEEPTVVSPTPPATVESW 477 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 +++ + A K + + A K+ + + Sbjct: 478 EKLIEAARIKFPLLAQKMESHLSLLSYTGGSGPHDPPCMEVMIAHAFAGEPSKVHKNLM- 536 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 D V L L + H+ D T E Sbjct: 537 -------DLLVSLKLPNGVVHIRKS------------------------SDGTRPDTEAE 565 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 ++ + + D IQ + R F+A++ + P+ Sbjct: 566 KQKKAQDAYQNALTREVADDPLIQEIERRFEAKIIH--VEPV 605 >UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 Tax=Cystobacterineae RepID=A7HGU5_ANADF Length = 606 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 199/653 (30%), Positives = 292/653 (44%), Gaps = 67/653 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F ++ GQ+HV+ L+N L G++ HA+LF+G RGVGKT+ ARL+AK Sbjct: 1 MNYLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C EI +GR VD++EIDAAS V++ RD+++ V+Y PAR R+ Sbjct: 61 ALNCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARDRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DEVHMLS +FNALLKTLEEPPEHVKF+LATTD K+P TILSRC +F + L + Sbjct: 121 KVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL + E + P AL L+AR AEG +RDALSL DQ A+ AV+ Sbjct: 181 QQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPDEAAVAEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + A+V G ++A + ARG+E + + E++ L + + +L PA Sbjct: 241 LGAVDAAAISRICGALVHREGGALLAELEALHARGLEMKRVAEEIVRHLRNVVVARLVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +R A P + + ++ + R +E+ LL + Sbjct: 301 TPLDLPDGELAEVRAQAAAADPAQLTRLFDLAQRAVVQVKLSEQPRYALEVALLEGVFLA 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E ++ A AP + PP P + P ++ A Sbjct: 361 PGAQVSELVARLEALARGAPLPPRSAPPSPPPPSAVPAPGGQTGAGGAAARTGLASSGTP 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ P A+ P A Sbjct: 421 GCAEGSEPAGWRPLPASTGSPA-------------------------------------A 443 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL--PKLVEQ 538 P A P + + W A V ++ P Sbjct: 444 GHPERSSDASAAEPSRGAPTAY--------------GSDAERWRAAVDEVEKVSPAGAPM 489 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR- 597 + + D + L + + + + +L L+ G V L I PA Sbjct: 490 LKQAVLRGIRDGEIDLVMPTDFLARSVERRRSELEPVLTQFLGRPVRLAISVGAPPAAEA 549 Query: 598 ------TP-------LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 TP A + + A+ RE+ NI+ R D +D+ Sbjct: 550 QSPDATTPTPVPASIAATEAAERQARSARVREAARNHPNIREAVRILDGGVDK 602 >UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Streptomyces RepID=Q9RKL5_STRCO Length = 784 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 170/656 (25%), Positives = 268/656 (40%), Gaps = 65/656 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP++FA+V+GQ HV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MSSLALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T TPCG C +CR++ + +D+IEIDAAS V+D RDL + + PA Sbjct: 61 CLNCEQGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPASS 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+Y+IDE HM+S FNALLK +EEPPEH+KF+ ATT+P+K+ TI SR + + + Sbjct: 121 RYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 +R L + E IA E L L+ RA GS+RD++S+ DQ +A +G V+ Sbjct: 181 PPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGADGVTYDMT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +++LG D S+VE+ V +G +++ G + + ++L L + ++ Sbjct: 241 TSLLGYTDGSLLDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLERLRDLVILAA 300 Query: 298 SPAALG----NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A + A + RM+E AR+ ++ + G E+ A R+ +E+ Sbjct: 301 VPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVNEGLTEMRGAHSPRLQLELIC 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV------------------------ 389 R + + Sbjct: 361 ARVMLPAAYGDERSVMARLDRIERGVQFSGGAGAPAMGYVPGPEAHAGAGAAAPVAAPVP 420 Query: 390 -----PPQPQSAPQQAPTVPLPETTSQV---------------LAARQQLQRVQGATKAK 429 + Q A T P + ++ V A A Sbjct: 421 GGGPAAARAAVRGQGAGTPPGGDPSADVAAGAGDGAGAGTGPASDAGGAPPGGGHPQAAP 480 Query: 430 KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKE 489 S A A P A A + A + W TP + Sbjct: 481 SSADVAPVPAPPSPATPSPAAAPAPAPASAPGAWPSAAPAGGGRRPGGWPTATPAGGGQP 540 Query: 490 VVATPKALKKALEHEKTPELAAKLAAEA---------IERDPWAAQVSQLSLPKLVEQVA 540 A A + P AA A R W + + + + Sbjct: 541 RTPAAPASGPAATAAQAPAPAAAAPAPVSPPSGASGVDPRSLWPNILEAVKNRRRFTWIL 600 Query: 541 LN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 L+ ++ L + ++ + + G++ L +AL+ ++ V D Sbjct: 601 LSQNAQVTGFDGTSLQLGFVNAGARDNFVSSGSEDVLRQALAEQFNVQWKIDAVVD 656 >UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79 Tax=Bacillaceae RepID=Q65PK1_BACLD Length = 566 Score = 358 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 158/552 (28%), Positives = 244/552 (44%), Gaps = 11/552 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A+L AK Sbjct: 1 MSYQALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I+ E + + AL ++A AA+G +RDALSL DQA++ +++ + Sbjct: 181 QAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L + E N + +NE +G + L+ +M+ + + Q +P Sbjct: 241 TGAVSQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ + L+R IP +D+ L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDEEFQTLSRQIPASDLYEMIDILNKSHQEMKWTNHPRIFFEVAVVKLCQG 360 Query: 360 HPRMPLPEPEVPRQSF-----APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + + V A + + P S A Sbjct: 361 PKAGASAAAQPEVDNLVNKVRQLEQEIERLKTQGVQVSSAPAQAKEASRPQKSIKSAYKA 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 ++ + E + + + S + +A KA Sbjct: 421 PVGRIHEILKDATRPDLEKLKGCWGQLLAQLKQQNKVSHAALLNDSEPVAASSKAFVLAF 480 Query: 475 AYRWKATTPVMQQKEVVATPKA-----LKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 Y V + L ++ PE E +D Sbjct: 481 KYEIHCKMVAEDNNGVRTNLEQILDGMLGGRIDIVGVPEAQWGKIREEFLQDHQPEDSEA 540 Query: 530 LSLPKLVEQVAL 541 + VA Sbjct: 541 NEPKEEDPLVAE 552 >UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 Tax=Shewanella oneidensis RepID=Q8EFG0_SHEON Length = 1002 Score = 358 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 247/572 (43%), Positives = 331/572 (57%), Gaps = 6/572 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA++A GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + +V ++ +TP P A +Q +LA + Sbjct: 359 PEKSVKRWQVDDAVKVDLSAQPALTPQATIPPEVPAERQLAVNAPVAEKKTLLATVANPE 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A ++ A +++ + + Q++ ++ + + A Sbjct: 419 AQLQAETTPETALEDDEPELNAALIAEQQV--ILSQAQSQGFGASADPVVSSNTALNQDV 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + T + + + + E Q Sbjct: 477 NSSDPTDPDTALTEQTATEDVLDAQNTAGDLAPEPYVAEAYGQYDYAQSNDAQSNYAQF- 535 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 N + + + H + A ++L Sbjct: 536 -NHAQSYDTSTPLDAYQDDYAHFMSEDAAEQL 566 Score = 132 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 2/302 (0%) Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 L + D + + + P + P + T + + Sbjct: 682 LEFESDFELPFDDDFEAEIYTKPELSTKATNAPLAPLSTRPITHSIIVPSTQQSAAAQHL 741 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 P +A T + +E + + +A L + V Sbjct: 742 PLDPNDRPPWEDAPVAECHHGNAEPITTSRQVNEESHLRQESAALHAPLLAVEPVQVAPA 801 Query: 459 ARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 + + + P A + Sbjct: 802 LTLPTNTQAAQVEQAAGQSHQLNHPDEVPATPPRELDAAAPPAPASDLTVAQSITGHP-- 859 Query: 519 ERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 W ++ L + V Q+A+N+ + N + L L+ Q+HL + A ++L +AL+ Sbjct: 860 LDLHWYKLMASLDIGGRVRQLAVNSICQVQSNPLPLLLKPDQKHLAAQVAIEQLEQALTA 919 Query: 579 LKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 G+ ++ +V +P+ TPLE R+ ++E L QAR+S+I D+N+Q L F AEL+ + Sbjct: 920 ALGAPRQVEVVIGTDPSRETPLELRKRFHQELLQQARQSLIMDDNVQWLINRFGAELEND 979 Query: 639 SI 640 S+ Sbjct: 980 SL 981 >UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S561_SHEAM Length = 909 Score = 358 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 257/615 (41%), Positives = 334/615 (54%), Gaps = 8/615 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ HVL AL N L R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITATPCG C CREI +GRFVDLIE+DAASRTKV+DTR++LDNVQY P+RGRF Sbjct: 61 GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ QL +L+ E + + AL LLA+AA GS+RDALSLTDQAIA G G+V V M Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L+L +A+ + + E ++ A G + + +L +L LLH+I++ Q +PA Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + A+ + P +QLYYQ LL GRK+LPYAPD G+EM+LLRA+ F Sbjct: 301 TASI--SDNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS--APQQAPTVPLPETTSQVLAARQQ 418 P P+ + A A V T+ PQ+ AP A P + A Sbjct: 359 PEKPVSRWQSGEGVSAAEALKLVAPSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGIAS 418 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE----KAPAKKE 474 + + +E A V ++ + + +A ++ Sbjct: 419 TLVAGTHSPVRTTEEPAVKADSSVATEEAPSGDDDVHEAESDALFAEQNLLISQAESQGF 478 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + A + P + + +A ++ +ER QL + Sbjct: 479 NPGYDAVNAGDNDLPLHDAPPLFDEMAYADYPQSYSADISETPVERGLDDGAGFQLQNEQ 538 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + V + A S + ED+ Sbjct: 539 SQSDHLQSGATGAQSKVVAESQPVNTPASAFGDDLLDAVLAAREDLLSGITSEAKEDEAK 598 Query: 595 AVRTPLEWRQAIYEE 609 + E R+ +E Sbjct: 599 KPVSSFERRRMAVQE 613 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP--TVPLPE 407 E L + +P + P P + + + Sbjct: 582 EDLLSGITSEAKEDEAKKPVSSFERRRMAVQETSTVPVTTAPTDKGTQDEISLGAMSANT 641 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 T+ + A + A + + A L +R A + + Sbjct: 642 QTATLTQATASVSGADVAADYDRPPWEDTATPDDSSKAPELALDYAVNRESAPVNAESPD 701 Query: 468 KAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH---------EKTPELAAKLAAEAI 518 KA ++ T K T K AA Sbjct: 702 KAHPEEYTSAAPHTQTPQPLKAESQTALQAKGQTHTDEVSSSDGVHCANHSAASPIGGDE 761 Query: 519 ERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 W + L + V Q+A+N+ N + L L+ Q+HL A +L EALS Sbjct: 762 TDLRWYKLMGALEIGGRVRQLAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSK 821 Query: 579 LKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 G E+ + + P TPL+ R + E L+ AR ++ D + L + A D++ Sbjct: 822 ALGHEAEIALEVGEVPGRETPLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDD 881 Query: 639 SI 640 SI Sbjct: 882 SI 883 >UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma and tau n=1 Tax=Moritella sp. PE36 RepID=A6FBQ8_9GAMM Length = 814 Score = 357 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 257/550 (46%), Positives = 327/550 (59%), Gaps = 11/550 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F VVGQ+HVLTAL N L R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPHNFQQVVGQQHVLTALVNALEQDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+TPCG C C EI+QG +VDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEKGITSTPCGECSTCVEIDQGCYVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRCLQFHLK L Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCLQFHLKCLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL+ EH +E AL +A+AA+GS+RDALSLTDQA++ G G+V Q V M Sbjct: 181 EQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSLTDQALSHGAGEVLYQTVLDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L L+ +V + + MA I E ++ G +++ L VE+ LLHRIAM Q+ P+ Sbjct: 241 LGTLDHSHMLQLLRLIVSGDANKCMAKIAEVSSLGPDFDQLHVELASLLHRIAMAQILPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ L + P D+QLYYQ L GRKELP APD R +EMT+LR LAF Sbjct: 301 SVVDT--EHADKVKALCDDMSPEDVQLYYQITLTGRKELPLAPDPRSALEMTILRMLAFR 358 Query: 361 PRMPLPEPE-----VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P+ L PE P V T + P + Q+ Q +P Sbjct: 359 PQGRLQAPERDVTPAPVAIAPAVTETIIAAPVEQTVVSQAPVQATTPAVMPIAAPVPAQI 418 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 +QQ + + A A + A + +QA +E ++ Sbjct: 419 QQQAPQQVQQPVPESMPQPVAPAAEQRDEAVTNLNLEQNELLQAAQAMGHVEPKTVTPQS 478 Query: 476 YRWKATTPVMQQKE----VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 + P + + ++ P A +A ++++ + Sbjct: 479 VEQQTADPQSVEPQNYVTPQIESPSVAPQDYAAPQPINTAPVAENSVDQGRKTRNFLRSR 538 Query: 532 LPKLVEQVAL 541 L ++ A Sbjct: 539 LGTTAKKSAA 548 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 103/272 (37%), Gaps = 1/272 (0%) Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 + A + + VPP+ P T + + + Q Q+ Q + E Sbjct: 543 AKKSAAAKSEQAPSSYVPPKKAVTPVIQHTPAMQSRFNAPASQPMQQQQAQQQSAPAWQE 602 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 + N + D+ PA+ A Q +V Sbjct: 603 LPPLDSYQDQGNFQGQGNYQDQDQGGYHNQMPEPSAYPAQGFAEPAIRQIDRFSQVKVDI 662 Query: 493 TPKALKKALEHEKTPELAAKLAA-EAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA 551 + + A L E DPW ++Q+SL V Q+AL++ E+ Sbjct: 663 NDLSPAFQAQKSGKSTATAPLDNKLRDENDPWCCYINQMSLGGRVRQLALHSVMEQEPGR 722 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L + QR+ N ++Q+L++AL + VEL I +N TP + + IY+++L Sbjct: 723 ITLTMNPDQRYFANDKSRQQLSDALQQVLSEPVELVINFGENLNKSTPAQLEEIIYQQRL 782 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A A +++ D IQ A +D+ SI P+ Sbjct: 783 ANATKNLYDDKYIQFFMNRLGAVIDDSSIVPL 814 >UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 Tax=Shewanella RepID=Q12LL5_SHEDO Length = 921 Score = 357 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 252/645 (39%), Positives = 339/645 (52%), Gaps = 26/645 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLLALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGVTASPCGTCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QLE IL +E + E +AL LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAFGSGQVMLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q + L++++ +A+ +M + + G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDERQVIGLLKSLCDADIAHLMQTTAQVLSFGADADEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + ++ A+ + P +QLYYQ LL GRKEL +APD + G+EM LLRA+AF Sbjct: 301 AAQ--HSLYSEQILAFAKQLKPEQVQLYYQILLTGRKELAFAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT-------------VPLPE 407 P + V + + + P+P T P+ + Sbjct: 359 PEKTVNRWVVDDTATLELPNGTSKAAAKTKPEPDVKLSAETTEVTEATETLAVLGTPVAQ 418 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAA-LERLASVTDRVQARPVPSAL 466 T + +A+ + + + + A +A L + AS+ Q S Sbjct: 419 TITAEVASLEVKDTPSDTEQVIEDDEGAPLKALTAEQDVLLSQAASMGFEPQNSNDDSPS 478 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + + + + ++ + Sbjct: 479 SDVVVNDTSSAQANDDASVTDEYADYMHYGFDEQVSEAHPDAYLQEPTLDSHSAEESLLV 538 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 +S+ + E S A+ L + + + L + Sbjct: 539 AEGVSVDGAALSSSAVLNPEVSQEALTLAVSDEALAPVVDDILDAVLASRDALIADVSAI 598 Query: 587 TIVEDDNPAVRTP----------LEWRQAIYEEKLAQARESIIAD 621 + + P + E QA Sbjct: 599 NLANNAEPNAGSIKVGVAKKPLGAPQASTQVESVRPQAETEAQNH 643 Score = 107 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 91/273 (33%), Gaps = 2/273 (0%) Query: 368 PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATK 427 P+ S + PQ+ Q + +T Sbjct: 620 LGAPQASTQVESVRPQAETEAQNHAPQALVTQEAPLLDKVSTDADRPPWVAASDGSSQFD 679 Query: 428 AKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQ 487 K N + + T PV AL A+ + + ++ Sbjct: 680 PLKLAQDTPLSHAQDNRVSSVGMEDKTTLDSILPVIEALPAIEAEAQGTGYA--EKMLDT 737 Query: 488 KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE 547 + ++ + W ++++ + + Q+A+N+ + Sbjct: 738 AMPAKLMSDVADDDSGIDAQLISEHQISGHEMDLHWYKMMAEVKIGGRIRQLAVNSVCQG 797 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 + L L+ Q+HL A ++L ALS V + + + TPLE R+ + Sbjct: 798 LASPFPLLLKPDQKHLGADVAVKQLEAALSEYLQQDVSIAVNVGYDEHRETPLELRKRFH 857 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 +E L QA++ +I N +Q L DA+L E+S+ Sbjct: 858 QELLQQAKQRLIGSNKVQWLLSQLDAQLQEDSL 890 >UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subunits n=3 Tax=Bacillus RepID=A8FAE4_BACP2 Length = 570 Score = 357 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 160/565 (28%), Positives = 262/565 (46%), Gaps = 13/565 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC CD C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I++ E + + +L+++A AA+G +RDALSL DQAI+ Q++ + Sbjct: 181 KDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L EA+ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ L+ + P + + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDENFVTLSDRVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQA 360 Query: 360 HPRMPLPEPEVPRQSFAP-----VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL- 413 +P + + + VP PQ+ P P+T+++ Sbjct: 361 TAGIPQAHANADLTTLTDKIDRLEQELSRIKAEGVPMSHSQHPQEKKEAPRPQTSNKNGY 420 Query: 414 -AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A ++ + K + E + + + S + +A A Sbjct: 421 RAPVGRIHEILKEAKRPELEKIKGKWGELLAHLKQQNKVSHAALLTDSEPVAAATHAFVL 480 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKA-----LEHEKTPELAAKLAAEAIERDPWAAQV 527 K + + V + L ++ +E P+ E RD + Sbjct: 481 KFKFEIHCKMVAEDKSGVRTNLEQLLESMLGKRVELVGVPDAQWGKIREEFLRDHQPDEQ 540 Query: 528 SQLSLPKLVEQVALNAWKEESDNAV 552 + E + K+ + Sbjct: 541 ADGQGTPAEEDPLIAEAKKLVGTDL 565 >UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 Tax=Chlorobiaceae RepID=B4S8V3_PROA2 Length = 617 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 162/654 (24%), Positives = 278/654 (42%), Gaps = 56/654 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV+ARK+RP FAD+ QEH+ + N L L R+ H Y+FSG RGVGKT+ AR+ AK Sbjct: 1 MSYQVIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAK 60 Query: 61 GLNCETGITA--------TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 +NC+ I PCG C++C + + G +++ E DAAS V+D R L +NV+ Sbjct: 61 AVNCQKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNNSVDDIRQLRENVR 120 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P +GR++VY+IDEVHMLS +FNA LKTLEEPP H F+ ATT+ K+P TI SRC + Sbjct: 121 YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQR 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG---- 228 F+ K + + +I+ QL+ I E + AL L+AR A+GS+RDA S+ DQ IA Sbjct: 181 FNFKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGND 240 Query: 229 -DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 + ++ Q V+ +L +DDDQ + +A+ E + +++ + G + + L +++ Sbjct: 241 AEKVIAYQGVAELLNYIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKLIE 300 Query: 288 LLHRIAMVQLSPAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 ++ + + ++ R ++ A + + L+ EL + + + Sbjct: 301 HFRNFLVLYNLRSTRLIERTESVKERYQQSAGGLSAPLVMQLIDLLMKESGELKFQFEYQ 360 Query: 347 MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 E+TLLR + ++ P V Sbjct: 361 FRFELTLLRLIELVHNDGGV---------------------------AASVAGGPPVKKK 393 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 + + + + + + P R AS+ Q + Sbjct: 394 APEPDLKQPDRHPGPAGRSAPGARPAELPSPASTPEQQPPSARSASLPPSPQQSAPRNVA 453 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 P + +M + + ++ + + + + R W Sbjct: 454 SGKPGVDFSA---WQGKLMNFTRNGSRKQPVQASSSDARQSGVFEGVVEVEKFRMEWNQF 510 Query: 527 VSQLSLPKLVEQVALN----AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 + L L K + + + S + + + L++ + G Sbjct: 511 LEML-LKKRQKVLVTHLRSCELTSCSHGVLVMTCGKKFSYEELMQDAALLSKEIESFYGI 569 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 V+L I D +T + R+ ++ ++ + + F EL Sbjct: 570 AVKLQICYDAARDAQT-------REQTIFTLFRDLAETNDVMKYIIKEFGGELV 616 >UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured bacterium URE4 RepID=C0JZX8_9BACT Length = 577 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 153/635 (24%), Positives = 266/635 (41%), Gaps = 65/635 (10%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V ARK+RP +F ++GQ+++ L+N + G++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSQYIVSARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC PCG C++C ++GR + E+DAAS V+D + L++ VQ P G Sbjct: 61 KMINCAHPGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQVPPQVG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ VY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 KYSVYIIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQTYDFNRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L I +E I + +L ++A+ A+G++RDAL++ DQ +A + + V Sbjct: 181 GIPDMVRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFCGTDIKYEDVV 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD D + +VE + + ++ +E ++G + + L + + + + Sbjct: 241 RNLNVLDYDYSFGMVENFLSGSYAAALSSFDEILSKGFNALHFVAALSSHLRDLVVARTA 300 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ ++ R RE A P + A + R+ +E L++ Sbjct: 301 GLDALLELPDSLKQRYREQAARCPLQFLYDALGVTTACEAGYKAAVNPRLHIEFALMKLS 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R + P+P + PQ AP +P + ++ A++ Sbjct: 361 FLTGRTDVSA----------------------APRPVAVPQAAPVIPSEKPSAIPSEAKE 398 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ A V R + + A Sbjct: 399 SPAPAPA-----------------------DKTAVAVAPVPTRQRRAPKNGSALSMNAIM 435 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + Q+ V A A + L AK R A +++ L E Sbjct: 436 QEKEEKPEQEAPVAAEAALPDDAAVKDGWKALIAKF----EARPRLANALAKAELRMSEE 491 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + + S+ ++Q+ + L + + S ++ + DD P Sbjct: 492 AGVKSVFFSVSN--------AAQKQWIEEKLLRDLETSFREILQSR-KVNLHVDDIPE-- 540 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 E + +A++ + ++ Sbjct: 541 --EEPGEKKPYMPEEKAKDLMDKHPEVRAFVADLG 573 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 356 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 154/479 (32%), Positives = 230/479 (48%), Gaps = 3/479 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRPQ+F ++VGQEHV L N ++ RI HAYLF G RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NCR I G D++EIDAAS V++ R+L + V+YAP G + Sbjct: 61 ALNCSGHGPVRPCNDCLNCRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP +V F+LATT+ K+P TILSRC +F + L V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFDFRRLGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +LE I IA L +AR AEG +RDAL + DQ ++ ++ + V+A+ Sbjct: 181 NEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGDVTAI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D+ + + + E V+ +N+ RG E L ++LG +++ P Sbjct: 241 LGAVADEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTRDLLGHYRDRLILRTVPG 300 Query: 301 ALGNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A I +++E +D+Q L ++ + R+ +E+ +R Sbjct: 301 AADLVDMPDDIAAKVKETGHVYSVSDLQACIALLSQAENDMKWTTHPRILLEVAFVRIAC 360 Query: 359 FH-PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + P P A A M + + A + + + R Sbjct: 361 REWGKGAGNAPASPTSGGAGGAADMEMRALRRRVESLEAKVREMQQAVENQGAASGEKRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 L A ++ AA Q + A ++ + Sbjct: 421 SLDSEALRRPQPAMPSATISKLDEETKAAARLAEGPIHIDQVNACWPNVLAAALERISP 479 >UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B5_LYSSC Length = 636 Score = 356 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 166/577 (28%), Positives = 264/577 (45%), Gaps = 23/577 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S VL RK+RPQ F +++GQ HV L N + ++ HAYLF+G RG GKTS A++ AK Sbjct: 4 SNFVLYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKL 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC++ I PCG C C++ D+IE+DAAS V+D RDL + V YAPA G+ K Sbjct: 64 LNCQSPIDYNPCGECVCCQD----SNTDIIEMDAASNNGVDDIRDLREKVNYAPAFGKKK 119 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLKTLEEPP H+ F+LATT+P K+P TILSRC ++ + + + Sbjct: 120 VYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQD 179 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I H+++ I+ E + E +AL+L+++ A G +RDALSL DQAI+ +G+V+ Q + + Sbjct: 180 DIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVEGKVTLQDIIEIT 239 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D + +L++ + ++N E + N G E L EM+ L I + + Sbjct: 240 GAVDTRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEK 299 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + E+A ++ P I Y L + + D ++ +EMT++ + Sbjct: 300 ATLKKGHNDPQFYEIANSVGPDKIYDYMDLLNKAHSNMKFHNDVQLLMEMTIIEMI---- 355 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 QS + + + S Q A T E T++ A ++ Sbjct: 356 -------NNQNQSPSILQQQIDELKQFIMGGNYSLQQVAVTQNATEKTNEESLANIDIKD 408 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 +QG A+ L + V + K E + Sbjct: 409 IQGMMLNDPIGFIEASEEATKKGDDWTNLVTEETVVIPSEKLTPPSKPLPPHEEHLEPPH 468 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 + E + +E P ++ E+ + D ++ + Sbjct: 469 VDDDEHLEPPSIEVENLATHNNELNP--KETVSNESEKTDSQPTSFGDFTVENIYLSERE 526 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 E L + ++ + AL Sbjct: 527 EIILE------ALASCNESHRKAFESKIEEFSAALKK 557 >UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LG88_CORK4 Length = 990 Score = 356 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 157/549 (28%), Positives = 240/549 (43%), Gaps = 7/549 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFADVVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++CR + G +D+ E+DAAS VED RDL D YAPA R++V Sbjct: 62 VHGPTSTPCGECESCRALAPGGPGSLDVTELDAASHRGVEDMRDLRDRAIYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR Q+ + L Sbjct: 122 FIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSRTHQYPFRLLAPND 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 +R LE I +EE + E L+ RA GS RD+LS+ DQ +A D ++ + +L Sbjct: 182 MRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGADENGITYAHAAGVL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + VE++ + + IN G + +++ + ++Q P A Sbjct: 242 GITDSALIDAAVESVANNDPAGLFTTINNVLDAGHDPRRFATDLVDRFRDLLVLQSIPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + + A+++ P + + G EL A R+ +E+ R + Sbjct: 302 FDQGLVDAPLDQRETLADEAQSLGPATLTRCAAVVSDGLNELKGATSPRLLLEIMCARMV 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + ++ PTA + + + S A S Sbjct: 362 MPGAADGIEALSQRVEALESGQPTASRSTSDNGHRVGSTSSSASEDGTRAAGSGAADNGA 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 K + S + A + Sbjct: 422 SGSDANATPPRAKGGGRIIWPRKNKKTETPTPQTSPSSEANTETSQEAKGTEHRDTGNAK 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + T A + +++ A + + + +L K + Sbjct: 482 PQETQSTSSGAPETPASPQEDAATPSQDEAAASSQAEAAPSQESVDPRTMDRETLSKYLR 541 Query: 538 QVALNAWKE 546 + AL +E Sbjct: 542 EQALQQERE 550 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 162/543 (29%), Positives = 257/543 (47%), Gaps = 6/543 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R +RPQTF DVVGQEHV T L N L R+ HAYLF+G RG GKTS A+++AK Sbjct: 1 MAYTALYRVYRPQTFQDVVGQEHVTTTLRNALRENRLSHAYLFNGPRGTGKTSAAKIMAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC CD CR I G D++EIDAAS VE+ RD+ D V++AP+ R+ Sbjct: 61 AVNCEQPIDGEPCNQCDTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRCQRFDFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I + + E +ALQL+A+ AEG RDALSL DQAI+ +V + + Sbjct: 181 RVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSKDEVRASDIMQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + E + +VM ++ +G + E L + L + +++ +P Sbjct: 241 TGTVAQSYFSVLARHIAENDIAQVMEQFDKVMVQGKDPEQFLHDFLYYYRDMLLLKTAPQ 300 Query: 301 ALGND-MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I+ + E+A+ + +T +L ++ R+ VE+TL++ Sbjct: 301 LEEIVERTMIDDQFAEVAKLYSFPVLYAAIETCNQALSQLKWSTYARVLVELTLVKMCQP 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + P S A + + + Q + + + +++ Sbjct: 361 NANATESMGASPVNSEELTAMSNRIRVLEERLVQVMQGQVSTPG-QQKAEETRKSEPRRI 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 G ++ + +A N R + + + + + Sbjct: 420 AAASGGSRTPMNRVREVAKAMDENLTRQVRGQWSQILTELKKIKIQYQAWLVNGQPVAAG 479 Query: 480 ATTPVMQQKEVVATPKALKKA----LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 V+ + K ++ +E + L L ++ + W + Q+ Sbjct: 480 NEAVVVTFNSAIHCDKTMEAELRSVIERVMSTVLGRPLQLLSVMEEEWQSVDQQVGQKDA 539 Query: 536 VEQ 538 ++ Sbjct: 540 SDE 542 >UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 Tax=Zymomonas mobilis RepID=C8WB95_ZYMMN Length = 628 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 192/644 (29%), Positives = 301/644 (46%), Gaps = 35/644 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F+D++GQ+ ++ L N ++ R+ HA+L +G RGVGKTS ARL+AK L Sbjct: 11 YRVLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKAL 70 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G+T PCG C+ CR I +GR +D++E+DAAS T V+D RD++++V+YA Sbjct: 71 NCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHTGVDDIRDIVESVRYASVS 130 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 RFKVY+IDEVHMLS+ +FNALLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 131 ARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVLSRCQRFDLRR 190 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + ++ E + E AL ++A+AAEGS+RD LS+ DQAIA G + V Sbjct: 191 ISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSILDQAIAHSSGSILAADV 250 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D SL+ ++E G+RV+ + G+E EALL +L L+H I ++ Sbjct: 251 REMLGLSDRGVIKSLLVDLLEGKGDRVLDHVKAQYDLGVEPEALLHGLLQLIHAITRSKM 310 Query: 298 S-PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L E+ + EL + + + +Q LL G E+ A EM LLR Sbjct: 311 GRPDNLTLHPTEEEIWLAELGKKLSFPVLHRLWQLLLKGHSEVQNAVLPLEAAEMALLRV 370 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + V+P+ +P P ++ A+ Sbjct: 371 IHASQLPDPATIIAQFKKQGSVSPSLSPSPEDNRLAPPTSSF-----------QDREASD 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + ++ A ++ + +L+ S + + E Sbjct: 420 VKKNISEQVSPSQFQAKEALSKNGNDFSKSLQPTEKKYFSSFDDDNNSRMAASDYPVEGK 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + + P Q + +A K E + + A L Sbjct: 480 QKFSELPENQPRPSAIPIAPASEAKLKNPHFPPDFKSLTEMLFDNGHALLGHSLEDYGR- 538 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 E + + L + +Q+L+ AL L ++ ++D Sbjct: 539 -------LIEYNPPRLLL----ENHSRISGETRQELSLALKNLTKQAWQVEFLQDRKGQP 587 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEES 639 + +E +A I+ +Q + + F DAE + S Sbjct: 588 S--FREAEIAQKEARQKA---ILNTPIVQAVLKTFPDAEWVQSS 626 >UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 Tax=Frankineae RepID=A8KYB1_FRASN Length = 855 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 173/614 (28%), Positives = 249/614 (40%), Gaps = 61/614 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL + L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTEALGHALRSGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEKGPTPEPCGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 +R LE I +E + EP L L+ RA GS+RD+LS+ DQ +A +GDG +S + A Sbjct: 180 GVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVLDQLLAGAGDGGLSYERAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ E +G + +++ + G + ++L L + +V P Sbjct: 240 LLGMTDGILLDETVDALAERDGAALFTVVDSVVSSGHDPRRFATDLLDRLRDLIVVAAVP 299 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A L RMR A I P ++ L G E+ R+ +E+ L Sbjct: 300 DAVERGLLEAFSTDQVDRMRAQAGRIGPVELSRTADVLHAGLVEMRGTASPRLLLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL V + A P + A ++ Sbjct: 360 RALLPGAAGDPAALAVRLERLERRAVVGGGAGAGTTPTGGAEVGGATHADARFGGARPAD 419 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + A A A Sbjct: 420 GGPGFGGAADSAHGQAAAHAPAPAAHT--------------------------------- 446 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLP 533 A A W ++ + Sbjct: 447 ----------------QTARPASPARPAMPAAAAPGGGGLDAAALNARWDEVLALAVQRS 490 Query: 534 KLVEQVAL--NAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + + + E + V L + + + LA L+ G T +TI Sbjct: 491 RRTHAILKDYASVAEVRGDEVVLAFSAPAMAKMFGQGNNVEILATLLAEKFGGTWRVTIG 550 Query: 590 EDDNPAVRTPLEWR 603 + P R Sbjct: 551 GGPGSSGGRPQAPR 564 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 131/376 (34%), Positives = 212/376 (56%), Gaps = 2/376 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RK+RP F +VVGQ H++ L N + RI HAYLF G RG GKTSIA++ AK Sbjct: 1 MAYQALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PCGVC+NC+ G D+IEIDAAS V++ R+L+D V+YAP +G++ Sbjct: 61 TLNCTNSQDA-PCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHM++ +FNALLKT+EEPP HV F+ ATT+P K+ TI+SRC +F + V Sbjct: 120 KIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSV 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+++L + E I + L L+A+ A+G +RDALS+ DQ +A + + + Sbjct: 180 NDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L ++ + + +R + I + + G++ + L + + +L ++ S Sbjct: 240 YGVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYSEN 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +R+ ++ P + L+ + YA + +E +LL+ ++ Sbjct: 300 S-TLVSDMNKDMIRKYFKSAPIHFRIQCMEELMDTYNKYTYASNALDYLEASLLKISSYS 358 Query: 361 PRMPLPEPEVPRQSFA 376 + E + + Sbjct: 359 YEPKSNKFESEYDNNS 374 >UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S8R6_9ACTO Length = 970 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 181/639 (28%), Positives = 271/639 (42%), Gaps = 27/639 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQE V L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCR--EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG CD+CR + G +D+IEIDAAS V+D R+L + +APAR Sbjct: 60 SLNCEQGPTPEPCGQCDSCRGLAPDGGGSIDVIEIDAASHGGVDDARELREKAFFAPARS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + Sbjct: 120 RFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLF 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + +R LE + E + EP L+ RA GS+RD+LS+ DQ IA +G V Sbjct: 180 PPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGPEGVGYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ A G + ++L L + ++Q Sbjct: 240 AALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEAGHDSRRFASDLLERLRDLIVLQQ 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A RM A+ + P + + G E+ R+ +E+ Sbjct: 300 VPDAAARGLIDGPADQIERMAAQAQRLGPATLSRCADIVHNGLVEMRGTTAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT----------PTQVPPQPQSAPQQAPTV 403 R L + PTQ +AP Sbjct: 360 ARMLLPGADDSSGGLLQRLERMERRLTLGGAELPPAAADPAHPTQTQGVRPAAPAPGAAA 419 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 S A A +A + A A P + A D A P P Sbjct: 420 AAVHADSAGTPAAAGAPTGAAAARAAAAAAVGARNAAPGSRPAPAGTEPAGDPEAASPAP 479 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE---- 519 +A E+A A A P + P A++ Sbjct: 480 AAPERAAVDPAASGSPAAASDAPAAARRPVPPSAVMPDPATPEPPRPGAANPGALDAVAV 539 Query: 520 RDPWAAQVSQLSL--PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 R W V +++ ++ + ++ + + L ++S+ L +AL Sbjct: 540 RRVWPEVVGKVNRSNKRIAALMRDAVVRDLDGDTLVLTVKSTVLAKMMADHAAVLTDALY 599 Query: 578 MLKGSTVELTIVEDDNPAVRT---PLEWRQAIYEEKLAQ 613 G ++ + P A + A Sbjct: 600 EELGGRWQIRCEVAGERGASSLGGPSRPSGASRAQADAA 638 >UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR83_9FIRM Length = 638 Score = 355 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 171/594 (28%), Positives = 255/594 (42%), Gaps = 39/594 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRP TF +++GQ+H+ + R+ HAYLFSG RG GKTS+AR+LAK Sbjct: 1 MAYLSLYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I G +D+ EID AS V++ R L ++V+ P G Sbjct: 61 AVNCLDLKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+P+TILSRC ++ + V Sbjct: 121 KVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYEFHRISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSA 239 I+ L HI E H++ P A L+A AEG LRDALSL DQ AS ++S + V Sbjct: 181 NDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAGNELSAEIVYD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +Q + L +V + L + G E A+L ++L I + +++P Sbjct: 241 LLGLTDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSIMICKVNP 300 Query: 300 AALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A +++ A+ + + + +L E + RM EM LLR Sbjct: 301 NAPELSAYGNKISVIQKDAQELSDAYLDALFDSLHHSFSEANRSSSPRMSAEMGLLRLCR 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L E + + + + PQ P Sbjct: 361 LRGSQALDSLEERITALEKNVSVLM--------KSSTLPQTETIPAAPSPAILPPTISIP 412 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 L T A + + P + Sbjct: 413 LVTPTALTPAPAASTTTCPDSPKEVVP------------------------PPPADKTPV 448 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL--- 535 K + + PK + + E + E+ L + D WA ++ + Sbjct: 449 KMEPATKSKPSLPCKPKKSPEEKKAETSHEIGETLLDPSTYNDIWAKVLAFFEINHRIDI 508 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHL--NNRGAQQKLAEALSMLKGSTVELT 587 + + ++ S + L NN+G Q + +A G VE Sbjct: 509 LYCLQKSSLILLSKSRAIAVASQPYLVLAGNNKGYQNTIKDAFINAIGIPVEFH 562 >UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15RT3_PSEA6 Length = 914 Score = 355 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 238/586 (40%), Positives = 324/586 (55%), Gaps = 15/586 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+ A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ + PCG C C EIEQG FVDL+EIDAASRTKVEDTR+LLDNVQY P+RGR+ Sbjct: 61 SLNCELGMGSKPCGKCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL+H+ +E + + P AL +ARAA+GS+RDALSL+DQAIA G+G VS V+ M Sbjct: 181 AQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAIAQGNGNVSLSIVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L L+ A++ E V L++ + + +++ +L E++ LLH++A+ Q P Sbjct: 241 LGLMDKTQVLKLLNAVLNKQNESVFELVDFMSEQAVDYSQVLNELMSLLHQVALTQFVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + +LA+ P IQL YQ L G++++P+A D R G+EMTLLR LAF Sbjct: 301 ACKLETISARA-IYQLAKNALPEHIQLLYQIALQGKRDMPFAADARTGLEMTLLRMLAFS 359 Query: 361 P-----------RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 P M S AP+ ++ + + Sbjct: 360 PVQVNTSVEELVAMTPSSAPSSGPSSAPLPMRDKHDLVTPTDDTPVESKETVVAAMAQAE 419 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A A K P+ A+ + N+ + + Q V + + Sbjct: 420 EAPQAPIATEIDNTQRVAAPKDAPSTASDSTSNNDFTNDSDFTARQNTQPLEVMGSKSER 479 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 +++ T E+ + I ++ Q Sbjct: 480 ADNAATQNQVEGAAAVEKTLADETSAQPFDDDEYHSAQMQDMEAQQAGILQEAEYFIQPQ 539 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEA 575 P + + +A SQ + ++KL +A Sbjct: 540 TQQPHDTNTAVDHQQEVHQQDASK---PQSQSTESLLALRRKLTQA 582 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 2/272 (0%) Query: 371 PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKK 430 S +P T P A + + + Sbjct: 644 EPSSPEQYSPEQATPYTYSAQADAPYPNDADVPNANQAELGEAPPWATDDANNQTSLNEF 703 Query: 431 SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEV 490 ++ + + + + A + + Sbjct: 704 NDINDINEVTVNEVTGGDVSVNELSHEALALDEVTVPVDAQEDIAENQQEIENTVFDPTA 763 Query: 491 VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN 550 + + + A + D W+A ++Q+ + L +Q+AL++ + + Sbjct: 764 HLAQDLECEVDYEVPAFLESGEKVTIAPQLDKWSALITQMQVAALTKQLALHSEFTQDGD 823 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 V L+L ++ HLN A+++L ALS + + L + D A+ TP +Q+I + Sbjct: 824 KVVLNLVQTKEHLNTDSAKEQLQRALSDVLQQQITLEVHVGD--AINTPFALQQSINRVR 881 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A++ + + +I + F+A++ +SI+ Sbjct: 882 FEYAKQVVETNESICMFKDMFNAQVLNDSIKA 913 >UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C6MGX6_9PROT Length = 537 Score = 355 bits (909), Expect = 5e-96, Method: Composition-based stats. Identities = 232/534 (43%), Positives = 320/534 (59%), Gaps = 13/534 (2%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS QVLARKWRP+ F ++ GQEHV+ AL N L R+HHAYL +GTRGVGKT+IAR+LA Sbjct: 1 MSQTQVLARKWRPRNFTELTGQEHVVRALTNALEQNRLHHAYLLTGTRGVGKTTIARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCETGITATPCG C C +I+ G F+DL+E+DAAS T+V++ R+LL+N YAP GR Sbjct: 61 KSLNCETGITATPCGTCTTCVQIDSGSFIDLVELDAASNTQVDNMRELLENALYAPTCGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTD QK+P+T+LSRCLQF+LK + Sbjct: 121 YKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSRCLQFNLKQIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 QI L+ IL +E I + +LQL+ARAA+GS+RDALSL DQAIA G G++ +V Sbjct: 181 QPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLLDQAIAFGAGKIEEASVRD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG +D L++A+ + NG ++++L +E AR + ++ L ++ +LHRIA+ Q P Sbjct: 241 MLGIIDHSYLFDLLDALTQKNGLKLLSLADEMEARCLSFDCALQDLAVILHRIALAQAIP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ALG D+ R+ LA+ + P DIQL+YQ L GR +L APD G MTLLR L F Sbjct: 301 QALGEDIPDYI-RINALAKILAPDDIQLFYQIALHGRGDLSLAPDEYAGFTMTLLRMLTF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 PE V Q V+ ++ +V +PQ P P VP + QQL Sbjct: 360 M-----PEDLVAHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVPADNSDLPWPQLVQQL 414 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + A + A A + E + ++ + SAL K A Sbjct: 415 KLAGMAKMLAQHSEAKILSADKIELCVPEVHKHLLEKKYQDKIQSALNTFFGKLVA---- 470 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 TP A+++ E EK + A + + + ++ ++L +P Sbjct: 471 --LDFFVGSITGLTPAAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAKLIIP 522 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 3/187 (1%) Query: 459 ARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 A + + + + Q +V + + HE P A Sbjct: 342 APDEYAGFTMTLLRMLTFMPEDLVAHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVPAD 401 Query: 519 ERD-PWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAEAL 576 D PW V QL L + + +A ++ + S + + L + +HL + Q K+ AL Sbjct: 402 NSDLPWPQLVQQLKLAGMAKMLAQHSEAKILSADKIELCVPEVHKHLLEKKYQDKIQSAL 461 Query: 577 SMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + G V L + TP +Q EEK AQA +I D +Q L FDA+L Sbjct: 462 NTFFGKLVALDFFVGSITGL-TPAAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAKLI 520 Query: 637 EESIRPI 643 SI+PI Sbjct: 521 IPSIKPI 527 >UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thiomonas intermedia K12 RepID=C7I1D0_THIIN Length = 612 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 240/649 (36%), Positives = 334/649 (51%), Gaps = 52/649 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ LARKWRP++FA +VGQ+HV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MTSVALARKWRPKSFASLVGQDHVVRALTHALDHDRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC + G+T+ PCGVC C EI+ GRFVD IE+DAAS VED LL+ Y P Sbjct: 61 ALNCTGPDGQGGVTSQPCGVCPACTEIDAGRFVDYIELDAASNRGVEDMTTLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHMLS H+FNA+LKTLEEPP++VKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLSNHAFNAMLKTLEEPPDYVKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+ +L E++ + AL+L+ARAA GS+RDALSLTDQA+A G+V T+ Sbjct: 181 KQMMPGAIVGHLQQVLQAENVPADDAALRLIARAAHGSMRDALSLTDQALAYCAGRVETE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLGT+D L +++A+ +G ++ + ARG+ + A L E+ LL IA++ Sbjct: 241 AVQQMLGTVDRSDLLLILQALASQDGVALIHQADALEARGLSFGAALEELAALLQTIALL 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 QL P A D + LA + P +QL Y T+L GR EL APD R G MTLLR Sbjct: 301 QLVPQAADADDP-QHEALVALAAQLSPELVQLAYTTVLHGRNELSLAPDDRTGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P S P P + + Sbjct: 360 LLAF-----------------------------APVIAGSVPSLPPGGLALPKAAAPASP 390 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q Q A + ++ +AT + A A+++ + A E+APA A Sbjct: 391 PSQSAAAQVAAQREQPATKSATPVQTAAKAMPRTAATLSAPLAPAAPVLAAEEAPATSYA 450 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-K 534 + + T A K + H + W V +L +P Sbjct: 451 AKPEPQTQPQPTPPRPADIKPPLQITPHIAS-------------DTDWPTLVQRLDVPAG 497 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 L +A + L LR L G+ KL A+ + G + L + Sbjct: 498 LPRALAQQSELVAMQGMDWL-LRVPNEQLTRAGSLDKLQTAVRLALGQDIVLRAEAGEVT 556 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + ++ + A A +I D +Q L A++ S++P+ Sbjct: 557 --DSVMQRDARAKAQAQADAEAAIRNDPLVQQLMHDLGAQIVPGSLKPM 603 >UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=2 Tax=Psychrobacter RepID=A5WFF8_PSYWF Length = 751 Score = 353 bits (906), Expect = 9e-96, Method: Composition-based stats. Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 2/492 (0%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP+ F ++VGQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L Sbjct: 1 MSQQYQVLARKYRPKNFHELVGQSHVSKALINAIDHNRLHHAYLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +K LNCETG+T+TPCGVC +C I+QGRF+DLIEIDAASRTKVEDTR+L+DNV YAP +G Sbjct: 61 SKCLNCETGVTSTPCGVCSSCVAIDQGRFIDLIEIDAASRTKVEDTRELIDNVPYAPTQG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 121 RYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + + ++L +E+I AL LA AA+GS+RDALSLTDQAIA G G+++ + V+ Sbjct: 181 PQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAFGQGRLTDETVN 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG +D +SL+ + + N + A I + A+ ++ ++ + LLH+IAMVQL Sbjct: 241 DMLGLIDSADLISLLLDIYQGNAPALSAHIEQMRAQLVDAGSMFDGLADLLHQIAMVQLL 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P N ++ LA I P +QLYYQ ++ GR+++ A +EM LLR LA Sbjct: 301 PNVSLNVNDLQAQQITALAAQIGPDVLQLYYQIVIQGREQIKLANTPLQALEMCLLRLLA 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + A A + ++ A Q + ++ + Sbjct: 361 FRPLALNEVAVASSNTPAHKASSDQPASIEMQAPNPHADQAEDYLTEQALSATSTESMAD 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + ++ + +L+S + + + A Sbjct: 421 TNIEPQSPNVNDADINNTANIDVKTHQDDYQLSSTSGADINPASLNETDFATPLASEPTA 480 Query: 479 KATTPVMQQKEV 490 + T P ++++ V Sbjct: 481 QDTRPQLEEQAV 492 >UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 Tax=Thermoanaerobacterales RepID=C6PF43_CLOTS Length = 533 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 142/429 (33%), Positives = 224/429 (52%), Gaps = 1/429 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP+ F++V+GQ H++ L N + GRI HAYLF GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C C +D+IEIDAAS V+D R+L DN+ YAP+ ++KV Sbjct: 62 NCPNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TILSRC +F K + + Sbjct: 122 YIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSKV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + I + +I E RA+ ++AR GS+RDA+S+ +Q ++ + ++ V +LG Sbjct: 182 ISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSY-NDVLTYDDVCDILG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 T++DD +LV+ + + N + V+ I++ GI+ L+ ML L I + + Sbjct: 241 TVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCGTES 300 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + A + + + L+ + ++ YA R+ E+T+L+ + Sbjct: 301 EEILETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLMNPEIS 360 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + + + +V A + + + Sbjct: 361 PDIDSILDRIKKLENRLNNVKVAFNGENDAGIISKKDVVKSEKGVQNDKVAADEIKKEHI 420 Query: 423 QGATKAKKS 431 + A KS Sbjct: 421 EITESADKS 429 >UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATA7_RUBXD Length = 567 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 156/546 (28%), Positives = 241/546 (44%), Gaps = 17/546 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L R+WRP+TF ++ GQE V+ L + GR+ HAYLFSG RG GKTS A++LA Sbjct: 1 MKHATLYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G T PCG C++CR I G +D+IE+DAAS +++ R+L D V APA GR Sbjct: 61 GLNCAQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVNLAPAAGRA 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLK LEEPPEHV F+LATT+ K+ TI+SRC F + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + +L I E I E AL +ARA+ GS RDA + DQ + +G+V+ V + Sbjct: 181 GTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVREL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+ + +A+ E + +++ ++ G + E++ L + ++ +P Sbjct: 241 LGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQFAAELISHLRVLMLLPHAPE 300 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A + E AR IP + + L + D ++ +E+ L+ Sbjct: 301 AALAEAGPEERPALEEQARRIPTGETVRMIEALGETSGRIRRGGDPKLELELCFLKLARD 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS-------APQQAPTVPLPETTSQV 412 + L ++ P + P + A + P P T Sbjct: 361 YTEPSLEGLVRRVEALEKRLEEGSAPPRENPAKESPEQPPDGRAGEAPPRQEEPPRTGAE 420 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRAR---------PVNNAALERLASVTDRVQARPVP 463 L LQ ++ + + + R + S + + P+ Sbjct: 421 LDWDSVLQELRARRQVPVAALYESARVEGCEDGLVKISFPEELAPLMKSAGEPKRVEPLR 480 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 LE+ + K + + P E E P + + Sbjct: 481 DVLEERLGFRPRVELKLSGEAPPRPPAAYPPSPEPARREGEDAPRAQERPHPPREGPEGE 540 Query: 524 AAQVSQ 529 + Sbjct: 541 EDVIRS 546 >UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Bacillales RepID=DPO3X_BACSU Length = 563 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 231/472 (48%), Gaps = 3/472 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I ++ I++ E + E +L+++A AA+G +RDALSL DQAI+ + + + Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L +++ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ REL+ IP + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQT 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET--TSQVLAARQ 417 + PEV + + +A P S A Sbjct: 361 SHQSAADLPEVDMLMKKIQQLEQEVERLKTTGIKAAAESPKKEAPRVPKGGKSNYKAPVG 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 ++ + + + + + + + S + +A A Sbjct: 421 RIHEILKEATRPDLDLLRNSWGKLLAHLKQQNKVSHAALLNDSEPVAAGSAA 472 >UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBF2_9BACT Length = 638 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 142/535 (26%), Positives = 232/535 (43%), Gaps = 4/535 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP TF VVGQ + T L N + G++ HAYLF G RGVGKT+ AR+ AK + Sbjct: 4 YIVSARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI 63 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE C C++CR + R ++ E+DAAS V+ + L++ + P G++K Sbjct: 64 NCEHPREDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPPQVGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDEVHMLS +FNA LKTLEEPP+HV F+LATT+ K+ TILSRC + + + V Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVA 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L+ + +E I +E +AL ++A A+G +RDALS+ DQA + G ++ Q V L Sbjct: 184 NTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 LD D LV+ +E +M ++ RG + ++ + + + M + Sbjct: 244 NVLDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAKDPQTL 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + + + A+ P + + + + ++R+ VE+TL++ Sbjct: 304 PLLETSDDQKAKFQAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQIGQIT 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P R + + + + + + + AA Sbjct: 364 QPEDQDVPSAGRTPNRLKSLFQKLLAQSKLASQGAGSEPSGSSENRSSQPGASAATATAV 423 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA--LEKAPAKKEAYRW 478 GA A + AA+ + AA A S K Sbjct: 424 PSSGAPTAASAASNAASYSASATAAASASPEGSAAAGAATDAASPHKPRLKNIKLGGIGM 483 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + +++ E + T + W + ++ Sbjct: 484 TFSNLKKKEENQRRLHSPYDDTNEEKATITGDQNEFTQEQVEATWFSMCMRMQNK 538 >UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobacteria RepID=Q47HW9_DECAR Length = 537 Score = 353 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 238/532 (44%), Positives = 314/532 (59%), Gaps = 6/532 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+ +VGQEHV+ AL + LS R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRNFSTLVGQEHVVRALTHALSEQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C C+EI+ GRFVDL+E+DAA+ T+V++ R LL+N YAP RGRF Sbjct: 61 SLNCETGITATPCGTCSACQEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L HIL E I + AL L+AR+A GS+RDALSL DQAIA G G+V V +M Sbjct: 181 LAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLLDQAIAHGAGRVEEAQVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D D +++EA+ A ++ + + R + + A L E+ LL R+ + Q P Sbjct: 241 LGTVDQDYLFTILEALHGAEPSALLQVAADLGIRSLSFSAALQELGALLTRLQIAQCVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D R++ LA + P +QL YQ + GR EL APD G MTLLR F Sbjct: 301 AIDDDEPE-RDRLKGLAAALSPEFVQLAYQIVNAGRNELAAAPDEYAGFVMTLLRLYTFR 359 Query: 361 PRMPLP--EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P VPR + A P AV + S P+ LP S + Q Sbjct: 360 PSTVADVVGAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPVIIPKLPPIASGEMDWHQI 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + A++ R + N L RL+ +Q RP P L++A + Sbjct: 420 VASLSLSGLARELAQNCELR-QLSENQCLLRLSPAQGHLQMRPNPDRLQQALSDFFGRPL 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + Q TP E+ A +A + RD + + L Sbjct: 479 QVRIELAQN--ENVTPAETVGRQRQEQQERAATAIAQDTFVRDVIESFDASL 528 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 96/290 (33%), Gaps = 2/290 (0%) Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + EP Q A + ++ + + +P Sbjct: 248 YLFTILEALHGAEPSALLQVAADLGIRSLSFSAALQELGALLTRLQIAQCVPGAIDDDEP 307 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 R +L+ + A + + A N A + + + A Sbjct: 308 ERDRLKGLAAALSPEFVQLAYQIVNAGRNELAAAPDEYAGFVMTLLRLYTFRPSTVADVV 367 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + V A + + P + KL A W V+ LSL Sbjct: 368 GAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPVIIPKLPPIASGEMDWHQIVASLSLSG 427 Query: 535 LVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 L ++A N + S+N L L +Q HL R +L +ALS G +++ I N Sbjct: 428 LARELAQNCELRQLSENQCLLRLSPAQGHLQMRPNPDRLQQALSDFFGRPLQVRIELAQN 487 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 V TP E +E+ +A +I D ++ + FDA L E SI+PI Sbjct: 488 ENV-TPAETVGRQRQEQQERAATAIAQDTFVRDVIESFDASLVESSIKPI 536 >UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VYC4_MARMS Length = 752 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 227/521 (43%), Positives = 304/521 (58%), Gaps = 2/521 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG CD+CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGR Sbjct: 61 CLNCETNGISPEPCGTCDSCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ L+ +L E + + AL + +AA GS+RDALSLTDQAIA G+G +S V+A Sbjct: 181 PQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIAFGNGTISESGVTA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q L L+E++ N +V+ I + A ++ A+ +L +LHR+A+ Q P Sbjct: 241 MLGLVNQAQVLDLLESVASKNAAQVLTRIEQLADYQPDFTAICGSLLDVLHRVAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + R++ +A ++ +IQ+ YQ+LLIGR++L A R G EM +LR +AF Sbjct: 301 GALMDQLGD-LARIQAIAASVSSEEIQIMYQSLLIGRRDLHLAHSARAGFEMLMLRLIAF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+ +T + + + T V + Sbjct: 360 RPAPPMVVSHNAPPVMNVQTEAVPITSPDESMHQTAESEYPLQPMTEKKTPVVKQEEPVV 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + +A P + E + A+E A+ E + Sbjct: 420 IKPAEQMVEPEPVQESAQPTAPAEHPPWEYAPEPAAAEEYVVEQVAVESESAQSEVIQHD 479 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 V + + + + L E+ + Sbjct: 480 IEEDVEITAVENSELEESLDVEQQTVSIALEPTARQESDIQ 520 Score = 93.9 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 2/303 (0%) Query: 340 PYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 YAP+ E + + + + + + Q Sbjct: 448 EYAPEPAAAEEYVVEQVAVESESAQSEVIQHDIEEDVEITAVENSELEESLDVEQQTVSI 507 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 A + + + + + + + + Sbjct: 508 ALEPTARQESDIQVETANKPEHEPKSFVVADDRFTEELLDESDEDEDEQEAEERAIADIV 567 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 P A + A + + + + A P E + Sbjct: 568 DPFNPAADLVDALGAEPIESSVVEESTEPDTRLSKVPDTIAQPALGMPLPEMSHFNE-LT 626 Query: 520 RDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 W +L L LV+ + +N+ + SD V L + H+ N+ +++ ALS Sbjct: 627 MKLWWLVAPRLPLTGLVQNILMNSSLVDASDQGVRLEVPLEYGHMLNQVRYEQIQGALSD 686 Query: 579 LKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 TV L I ++ T E+ + E L A + + +Q L A+L + Sbjct: 687 FFAMTVPLIIDTVEDTTGVTAEEFAASKRAEALQVAITHLNSHPVVQALSATMGAQLVYD 746 Query: 639 SIR 641 +++ Sbjct: 747 TVK 749 >UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8CMY6_SHEPW Length = 946 Score = 352 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 267/627 (42%), Positives = 361/627 (57%), Gaps = 14/627 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGR+ Sbjct: 61 GLNCEQGVTATPCGQCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L E + E AL LLA+AA GS+RDALSLTDQAIA G GQV + V M Sbjct: 181 DEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSLTDQAIAFGAGQVKLELVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q ++L+EA+ +A+ +M + + G E E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKQVIALLEALAKADVMALMQVSAGVLSFGAEPEEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A M+ +++ A+ + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+ F Sbjct: 301 AAQ--MSLYSEQIKAFAQQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVTFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + +P A+ P P + + A + +V AA + Sbjct: 359 PEQPVSKWVTD-------SPAAIAIPQAAAPAITQSSESAKPQAIVAPQQEVKAAPVEEA 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + S PV L+ + + PV S LE ++ +A Sbjct: 412 AEKKTVLTANSVNDKQPNQDPVAADTLKPELAAIEASVGAPVSSTLESMNSEMAVILSQA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA---QVSQLSLPKLVE 537 + + T + + E P + A+ A+ D QL P ++ Sbjct: 472 QSQGFSSSDTSETKDISTEQTQSEVKPPVKAQQPADTSTSDDATEISSIAEQLPKPSDID 531 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 N + +V L + Q+ +++ A S G+ D + A+ Sbjct: 532 SNLNNTVV--DNASVKLEAQKGQQVQDSQFDGDDDLAAYSQYAGAYDTDIDDSDFDFALE 589 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNI 624 Q I + + A+ + I+ + + Sbjct: 590 QSEPLAQDITDRRQNAAQSAAISTSLV 616 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 2/267 (0%) Query: 376 APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 + + +P + P + P S + + Q KA ++ Sbjct: 652 EEDPQESSAKKSVAERKPFAPPVRKPKAEPEIDNSDPATVGAKSDQAQENIKAANADNQE 711 Query: 436 ATRARPVNNAALERLASVTDR--VQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 T RP + + + A + A + + Q K V + Sbjct: 712 ETFDRPPWEEPHAQDPTPRFDDVAVEKEANKAADNAAVEPKRTPQPQNQTEQQSKPPVTS 771 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 + P L + W ++ L + V Q+A+N+ + + + Sbjct: 772 LDSTSVQDVELNLPALPSGEITGNDIDLKWYRFMADLEVGGRVRQLAVNSVCHQFEQPLS 831 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQ 613 L L+ Q+HL A ++L EA+S G E+ I + + TPLE R+ ++E LAQ Sbjct: 832 LLLKPDQKHLGADVAIKQLEEAMSKALGEPSEVRISVGVDSSRETPLEVRRRFHKEILAQ 891 Query: 614 ARESIIADNNIQTLRRFFDAELDEESI 640 A +I D+N++ L A+L +S+ Sbjct: 892 AHHGMITDDNVRWLSENMGAQLTPDSL 918 >UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 Tax=Bacteria RepID=A3QF53_SHELP Length = 1113 Score = 352 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 236/523 (45%), Positives = 317/523 (60%), Gaps = 3/523 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L + Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + ++ A++LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D+ + L++A+ + + + +M + + + G + +L +L LLH+I + Q +P+ Sbjct: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A+ + P +QLYYQ LL GR++LP+APD + G+EM LLRA+AF Sbjct: 301 AAQL--SQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + P + + P ++ + Q Sbjct: 359 PEAPVQRWMGE-AGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEA 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 V+ + ++ A+ V + + ++ + E + + Sbjct: 418 EVEDKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADS 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 T +++ A ++ L + A Sbjct: 478 TEKDALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNH 520 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 103/302 (34%), Gaps = 1/302 (0%) Query: 340 PYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFA-PVAPTAVMTPTQVPPQPQSAPQ 398 A D + VE A+ + P + P S Sbjct: 784 QNAQDNALIVEAVSNTAVTNEAGKTEHGTKAPETQHNYSAQQPNAYLNDEDRPPWVSPEP 843 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 V P LA + Q A ++ + + +L+ + + Sbjct: 844 SLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQGLDELSLEDQSLDDQSLDDQSLD 903 Query: 459 ARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 + E+ + + V+ P A+ + + A Sbjct: 904 DQSSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVTEPVSQTTQVAFVADEITGHD 963 Query: 519 ERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 W +S L + V Q+A+NA + + L L+ +Q+HL GA +L +ALS Sbjct: 964 TDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKHLAAPGAISQLEDALSK 1023 Query: 579 LKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 G + ++ P TPLE RQ + E L QA + ++ D NIQ L + AE++ + Sbjct: 1024 ALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWLTQVMQAEMEPD 1083 Query: 639 SI 640 S+ Sbjct: 1084 SL 1085 >UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, putative n=2 Tax=Rhodothermaceae RepID=Q2RZH6_SALRD Length = 728 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 163/539 (30%), Positives = 241/539 (44%), Gaps = 8/539 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP F +VV QEHV L N + + R+ HAYLFSG RGVGKT+ AR+LAK + Sbjct: 6 YLVTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAI 65 Query: 63 NCETG-----ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NCET A PC CD+C E GR +++ E+DAAS KV+D R+L + V+ P Sbjct: 66 NCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQG 125 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + KVY++DEVHMLS+ +FNALLKTLEEPP H F+ ATT+P K+ TILSRC +F + Sbjct: 126 DQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRR 185 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + V +I +L I E + + +L LLAR G+LRDALS DQA++ + + Sbjct: 186 IPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGEL 245 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ- 296 + LG +D D L + + + ++ L+ G + + +LV + L + + Sbjct: 246 TQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVAHS 305 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L AL + R + A D+ ++ +P R+ +E TLL+ Sbjct: 306 LGGEALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKM 365 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L +A P VP +A + A P P + + Sbjct: 366 AQLRRSADLRAVLEKIDRLEQMA-EDGDLPEAVPGDGVTASETASAPPAPPESEKSENTE 424 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A+ +EP A T ++ P + APA Sbjct: 425 TGGAAGREASPDAAAEPRPGYGPESTAPPNAPEDAPSTKDAESDPKNETPDGAPADVVDE 484 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T + + +A E P+ A+ + E A Sbjct: 485 AGNETLSASDEDDAPNDDAPNDEAPNDE-APDADAQGPDDGDEPPSSDAPADGTDASGA 542 >UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 Tax=Actinomycetales RepID=A8LYH3_SALAI Length = 834 Score = 352 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 170/634 (26%), Positives = 258/634 (40%), Gaps = 20/634 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQEHV L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C +CR + +D+IEIDAAS V+D R+L + +APA+ Sbjct: 60 SLNCEHGPTPEPCGTCGSCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFAPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + +R LE + E + EP L+ RA GS RD+LS+ DQ IA +G V+ Sbjct: 180 PPKVLRPYLEQLCQAEGVQVEPAVFPLVVRAGGGSARDSLSVLDQLIAGAGPEGVTYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ G + ++L L + ++Q Sbjct: 240 AALLGVTDSALIDEMCDALAAGDGAAAYATVDRIVGAGHDPRRFAADLLERLRDLIVLQR 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + RM A+ + P + + G E+ A R+ +E+ Sbjct: 300 VPDAAPKGLVDGPDDQIERMTAQAQRLGPGTLSRCADIVHDGLVEMRGATAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + A P P + AP+ S Sbjct: 360 ARMLLPGADDSAGGLLQRLERLERRLTLAGTDALPAAPAPSAGAAPAPSAGAAPALSAGA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A+ + A + + ++ + A+ A P + Sbjct: 420 ASASDDSPRRPPAAAVPASAEDPAGSLAMSGTSSGLAAARAAAAPAGSRADQPPGQPDRP 479 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL- 532 A+ + V+ P + A R W V + Sbjct: 480 GPDASDASRRASARPAVMPDPVTPEPPRPGTT----DRGTLDAAAVRRHWPEVVGLVGRK 535 Query: 533 -PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE- 590 K E + L R L E+L G ++ Sbjct: 536 SKKAAAWAREATVHEVDGETLVLAFRYPFHAQALANEPDLLIESLYEELGERWQIRCEVA 595 Query: 591 -----DDNPAVRTPLEWRQAIYEEKLAQARESII 619 R P R + + + Sbjct: 596 GERVGGPGAGPRAPGPARPVTAPARPEPSTAPVE 629 >UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Tax=Symbiobacterium thermophilum RepID=Q67TJ5_SYMTH Length = 570 Score = 352 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 160/456 (35%), Positives = 232/456 (50%), Gaps = 2/456 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++ L R++RPQ F +VVGQEH+ L N + GR+HHAYL SG RG GKT++AR+LAK Sbjct: 1 MAHLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G +DLIEIDAAS +++ RDL D V +AP ++ Sbjct: 61 AVNCLNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ QKLP+TILSRC F + L Sbjct: 121 KVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++I +L + ++ + P AL +AR A+G +RDALSL DQ +A +G+++ A Sbjct: 181 DEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAAEGEITLDMTLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT DQ L+L ++ + + ++E G + L+ + L L + +V+L Sbjct: 241 VLGTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKLEA 300 Query: 300 AALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + +MR A + + L EL +P R+ VE+ L+R Sbjct: 301 GAQVLGLPAEALEQMRARAEPFAERQLIRAIRLLGQAETELRLSPSPRLLVEVALIRLTG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 E E + AP+ +PQ A Q P A Q Sbjct: 361 LFTGAAADEGEDDGTAAEAAAPSRRRRQEHGEVRPQGASQATAPGPAGPGDPGEPAGGQA 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVT 454 A + + + R ++ Sbjct: 421 TTPSAPAPVGAGVDRVVEAWEQVLGLVRKARTSTYH 456 >UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 Tax=Actinomycetales RepID=C7Q5N1_CATAD Length = 863 Score = 352 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 160/557 (28%), Positives = 232/557 (41%), Gaps = 22/557 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 20 LALYRRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAYLFSGPRGCGKTTSARILARCLN 79 Query: 64 CETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +C E+ G +D+IEIDAAS V+D RDL + +APA RFK Sbjct: 80 CEQGPTPTPCGTCRSCVELANGGSGSIDVIEIDAASHGGVDDARDLRERAFFAPAASRFK 139 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 140 IYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSRTHHYPFRLIPPG 199 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 +R L I E I EP L L+ RA GS RDA+S+ DQ +A D V+ + + Sbjct: 200 VLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVLDQLLAGADENGVTYAMATGL 259 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LVEA +G V L+++ G + L ++L + ++ Sbjct: 260 LGYTDAALLDRLVEAFAGNDGAAVFGLVDQVVESGHDPRRFLTDLLERFRDLVVLNAVTD 319 Query: 301 -----ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 AL + RM AR+ +++ + G E+ A R+ +E+ R Sbjct: 320 AGAARALIDVPDDQFERMAGQARSFGASELSRAADLVNTGLTEMRGATAPRLLLELVCAR 379 Query: 356 ALAFHPRMPLPEPEVPRQSFAP-----------VAPTAVMTPTQVPPQPQSAPQQAPTVP 404 L P V + P + P+ Sbjct: 380 VLLPGADDAERGLVARVDRLERRGVVLGAAAPAPMAPMGSGPRVVEDEYDEPPVRRPSAA 439 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + V A + + P A+ + + + Sbjct: 440 GAGAGASVPAGSVPSGGNPQNAPDNQQATGGGSLGTPPWEQGGGPSAANSGGGAEQSAAN 499 Query: 465 ---ALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 A A W+ A A E + + AA + Sbjct: 500 SGGAPNPAAGPLGTPPWEQGAGAPAAANANANANNNANANAPEPSSTGSGPAAATSQGAL 559 Query: 522 PWAAQVSQLSLPKLVEQ 538 S +Q Sbjct: 560 GTPPWESGAPNAGASQQ 576 >UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1W4_ABIDE Length = 522 Score = 352 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 136/380 (35%), Positives = 221/380 (58%), Gaps = 3/380 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP+ F +V GQ+ V+T L N + +I HAY+FSGTRG GKTS+A++ AK Sbjct: 1 MSYTALYRKFRPKGFDEVKGQDSVVTVLKNQIKHEKIGHAYMFSGTRGTGKTSVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE +PCGVC+ C++I +GR +D+IEIDAA+ V++ R++++ V+Y+P ++ Sbjct: 61 AVNCENTKDGSPCGVCETCKKIGEGRTLDVIEIDAATNNGVDNMREVIEEVKYSPTDTKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPE+ F+LATT+P K+ TI SRC ++ + + + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQKYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 E I +L+ ++++E +E AL+ +AR +GS+RDALSL DQ +A D +++ V Sbjct: 181 ETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFSFDEKLTYDKVLN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG++D D L A+ + M + E + GI+ ++ + ++++S Sbjct: 241 VLGSVDTDLFNKLYIAIKRGDVTTCMDIAEEISMNGIDIGQFTLDFTWYFRNLLLLRVSK 300 Query: 300 AALG--NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 AA ++E+A+ D+ Y + ++ Y+ +R +E+ L++ Sbjct: 301 AAADRIEISTDKLAELKEVAKIGEENDLYRYIRIFSKLSADIKYSTSKRAELEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAP 377 Sbjct: 361 RPEMEEDRESLIARINKLEE 380 >UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 Tax=Staphylococcus RepID=B9DLF5_STACT Length = 583 Score = 351 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 168/637 (26%), Positives = 273/637 (42%), Gaps = 69/637 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N ++ G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + PC CD C+ I QG D+IEIDAAS V++ R++ D V+YAP++ ++ Sbjct: 61 AINCPNSVDGEPCNECDICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L ++ +HI ++ A+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 DQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ +L+ + + A ++ A G E L+ +++ + M Sbjct: 241 TGSVDEASLNALLNDVANGQVKDAFARYHQFIAEGKEVNRLINDLIYFVRDTIM------ 294 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 N A E L + + + ++ ++ + E+ L++ Sbjct: 295 ---NKTAQRETEYDALMA-FDLDTLYKMIDLINDTLVSVRFSVNQNVHFEVLLVKM---- 346 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 E + Q P PQ A Q + +S +L + L+ Sbjct: 347 -----AELIKEGDAPVANPDMHSANAHQAPSAPQPAQQNN------DVSSALLQRLEHLE 395 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A K + + N+ R + Q V + K K W+ Sbjct: 396 QELNALKQQGVTSTNTPPKQKSNSRGRRRSKNSYSMTQIAKVLDSANKEDIKLLKDHWQE 455 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + A L+ ++ + + + Sbjct: 456 VIDHAKNHNQKALVSLLQNSIP-----------------------VAASEKSVLVQFEAE 492 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 ++ D+ + L E + + V + V D Sbjct: 493 IHCEIVNDDD----------------EKRSNLEEVVRSIINKNVSVVGVPADQWLQVRSE 536 Query: 601 EWRQA----IYEEKLAQARESIIAD-NNIQTLRRFFD 632 + A E + + +Q + F Sbjct: 537 YIQNRKKGGANNASQESANEPEQQEVDIVQKAKDMFG 573 >UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bacteria RepID=A4CK17_9FLAO Length = 631 Score = 351 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 157/641 (24%), Positives = 259/641 (40%), Gaps = 32/641 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RPQ F DVVGQ+ + L N + + A LF G RGVGKT+ AR+LAK + Sbjct: 15 FIVSARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKI 74 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 N + + ++ E+DAAS V+D R+L+D V+ P G++KV Sbjct: 75 NEDGNQRDG------------EDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKV 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC F + + V Sbjct: 123 YIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDFRRITVGD 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 L++I ++ I + AL ++A+ A+G++RDALS+ D+ ++ +++ +AV+ L Sbjct: 183 AASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNKLTRKAVAENLN 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-A 301 LD D + +++ + ++ NE A+G E + + + + A Sbjct: 243 VLDVDVYFESTDHILKGDIPALLIYFNEILAQGFEGHHYINGLASHFRDLMVCTSQETVA 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 L ++ R E A + + + + R+ VE+ L++ + Sbjct: 303 LLETSESVRQRYLEQASHCSGEFLLAALDLANQCDLDYKTSKNHRLLVELCLMKLASLTQ 362 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 R P A TP + + S Q Sbjct: 363 RQKKKARNGEDAWLIPAAAFHNQTPPPETVSEPESTSKPAAGAQEGAESSPETVGSAHQT 422 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + ++K + R + A P + P K+ K + Sbjct: 423 TESIPESKDMPESKDIREPEGAEQSQSPDNQKETSAPAGPKETPAPTLPVGKKKSGQKVS 482 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK---LVEQ 538 + KA + +L E+ + W Q L Sbjct: 483 GLSLSSIRAKKAHKASRHHAAPNPE-DLPRDPFEESELQALWKEFAEQTEKRGRKILAAS 541 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR 597 + + K D+ + + L +S Q +L + L ++L I ++ A + Sbjct: 542 LGTDLPKLIGDHVIWIELPNSTMKKEVERDQFELMDFLRTQLNNHHIQLKITVNEETAKQ 601 Query: 598 ---TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 TP E Q + + I LR+ FD EL Sbjct: 602 FAFTPEEKYQKLR-----------EKNPAIDLLRKTFDLEL 631 >UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB01_KANKD Length = 773 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 227/613 (37%), Positives = 323/613 (52%), Gaps = 25/613 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++ GQEHV AL N + GR+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPKNFDELQGQEHVSRALVNAIESGRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE G+T+ PCG C +C EI++GRFVDLIE+DAASRTKV+DTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGLTSKPCGECGSCVEIDEGRFVDLIEVDAASRTKVDDTRELLENVQYKPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVYLIDEVHMLS SFNALLKTLEEPPEHV FLLATTDPQKLPVT+LSRCLQFHLK ++ Sbjct: 121 YKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLSRCLQFHLKHME 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I E AL+L++R+AEGS+RDALSL DQAIA G G+V + + Sbjct: 181 EQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLLDQAIAFGQGKVQEEDIRT 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLGT+D + L+EA+ + + + E + +++ L E+L +H++A+ Q + Sbjct: 241 MLGTIDHQFMVKLLEALANKDSAEAIKAVAEMSHYPVDFADALKELLSRIHQVAIFQSTG 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L +E A I D+QLYYQ L R++L +AP R G+EM LLR LAF Sbjct: 301 VLLDQAAPYVED----FASKIASDDLQLYYQMGLHARRDLEWAPSPRQGLEMALLRMLAF 356 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ V+ S ++ ++ PE+ +Q L Sbjct: 357 RLE-----------------PSQVVQNNSSQTSLDSEAKKKASLKQPESAAQPATVEPGL 399 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + + + + LE+ + P + + Sbjct: 400 IE---NSALENNAAEKYSAPKTAPEQKLEQEPKQEREQKPEPSTAHKTVTEETQSFSDAP 456 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 P + + ++ ++ E + + ++ + Q Sbjct: 457 EEPPFNPDDYASFSDDEKTEESIVDQYQTASSSKPEEQAAQASSNTVIENKTVKENTAQA 516 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + N + L L S ++R QK+ + + T + E ++ Sbjct: 517 SSNEQAALASLHSALGLNFSDDADSDRAPSQKIEQPVQEEVVETGQTETGESESTQNEPE 576 Query: 600 LEWRQAIYEEKLA 612 + + Sbjct: 577 QSNDDEFRLQPVQ 589 Score = 97.8 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 95/293 (32%), Gaps = 2/293 (0%) Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E +++ E S + V T + A + L Sbjct: 476 EESIVDQYQTASSSKPEEQAAQASSNTVIENKTVKENTAQASSNEQAALASLHSALGLNF 535 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 S + + + ++ T + E S D + +PV E+A Sbjct: 536 SDDADSDRAPSQKIEQPVQEEVVETGQTETGESESTQNEPEQSNDDEFRLQPVQPIEEEA 595 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 A+ E + + L E WA V + Sbjct: 596 EAESEPATSPKLAQEQVSSVDEISLQETSLEKTVLVEAALEESGPPATEEALQWAQHVKK 655 Query: 530 LSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 + L Q+A ++ K +D+ + L + +Q L+ A+Q + EAL+ ++++ Sbjct: 656 MDLTGTYHQIAQSSTVKWLTDDKIQLTVEPTQDILSTDTAKQAIEEALAQYFSKSIKIEW 715 Query: 589 VEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + P V TP Q + K +A E I Q L + F A LD+ SI+ Sbjct: 716 QFAE-PDVATPAMIWQRAAKAKHRKACEMITQHPFAQQLAQKFAATLDKNSIQ 767 >UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N205_9FIRM Length = 640 Score = 351 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 156/587 (26%), Positives = 262/587 (44%), Gaps = 20/587 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RPQTF +V GQEH++T L N + RI HAYLF+G RG GKT++A+LLAK Sbjct: 1 MSYKALYRSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ I G D+IEIDAAS V++ RDL+D V+YAP G++ Sbjct: 61 ALNCT--GENPPCDQCPNCKAITVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPINGKY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP H+ F+LATT+P K+ TI+SRC +F K ++ Sbjct: 119 KVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKKVEN 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE++L E+ +E AL+ +A+ AEG +RDALS+ +Q +A + +++ ++V+ + Sbjct: 179 HDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAY-NNELTVESVNMV 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L D +S ++ ++ + + V+ ++ + I+ + L +++ +L I + + + Sbjct: 238 YGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRLTFDLVDVLKDIIIYKNT-Q 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + LA I + L+ + D E+ +L+ Sbjct: 297 DVSILFVLTQQDVDNLAPYILVEEAFEIIDILIEASSHYSQSLDANTYFELAMLKICNRI 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 S A + P + + E + + Sbjct: 357 KEENK---LAIDNSKAIEQVNILPVKDTAKAIPVVEETDSLPEEVIEDEIIEEELNKGVI 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + E A E +A T + Sbjct: 414 EYDPEIEESIPEELKAKADDITETVVPEEVAEGTLET--------VISNSDVSLPVGEDI 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS---QLSLPKLVE 537 + + + V +P+ ++ + + A ++ W L+ K Sbjct: 466 SQEIDENIIVNKSPENIEVSFSDILNILVQADRRVLNDIKEKWTVIARYRFNLNTAKFAS 525 Query: 538 QVALNAWKEESDNAVCLHLR--SSQRHLNNRGAQQKLAEALSMLKGS 582 + + + + + +N +L L + G Sbjct: 526 MLCDGKPVAAAPGGIIVAFEHQPNVNEVNETQNYYQLKNFLKEVLGE 572 >UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJ36_9DELT Length = 747 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 188/731 (25%), Positives = 292/731 (39%), Gaps = 91/731 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y LARK+RPQ FAD++GQEHV L N + R+HHAYLF G RG+GKT+ AR+LAK Sbjct: 1 MAYLALARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTTAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T PC C +C I +GR VD+IEID AS V+D R L D V Y P R Sbjct: 61 CLVCEHGPTPEPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYLPQIARR 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP HV FL ATTDP K+ TILSR + + + Sbjct: 121 KIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYRRVRA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD--GQVSTQAVS 238 + L+ IL +E A EP L ++AR +GS+RD+L+L D+ IA ++ + V Sbjct: 181 ATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFAHDPKAITGEEVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG LV+A+++ + V+ + + G + L V +L L + ++ L+ Sbjct: 241 TVLGQASRYAVAELVQAILDRDAASVLQRFEQITSSGSDLMQLAVAILQHLRDLTVLSLT 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AAL + + +++ A PT + ++ + ++ R+ +EM LL Sbjct: 301 KSRAALLDMNDDLFEQLQRQAGATSPTVVAQHFDRFARVVDSIEHSRVPRLVIEMGLLEL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 ++ P MPL + + + PT + + P Q A+ Sbjct: 361 VSAEPLMPLGDLVTRLDALSKGRPTPRGGGGGGGGGRRGSGGGGGGRPRGPAPRQAAPAQ 420 Query: 417 Q---------------------------QLQRVQGATKAKKSEPAAATRARPVNNAALER 449 Q + + PA + + LER Sbjct: 421 AAPMRAGPPASAAPMPAPTPAPNPSPVVHRPPAQTQAPKRATAPAGGGGSGNASADMLER 480 Query: 450 LAS----VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 +A + + + + A ++ A ++ P P + Sbjct: 481 MAREAGLLGGKPEPAQARTPQRNAAPQRSAAAQRSAPPQSNAAPQRNAPPQYQDGPPPRD 540 Query: 506 TPELAAKLAAE---------AIERDPWAAQVSQLSLPKLVEQVALNAWKEES-------- 548 P A + A+ D + K + ++ Sbjct: 541 EPPWPVPAANDPRSPQGQGFALTNDRLRPVEPSSEVAKDPQAACPSSRCTPREPIQWRQL 600 Query: 549 ------------------------DNAVCLHLRSSQRHLNNRG---AQQKLAE------- 574 DN L L L A+ +L E Sbjct: 601 GSWDAWETFLSRVRQENDLLSAVLDNLGLLSLTEGHVELAAPANGFARTQLRENPEIEAA 660 Query: 575 ---ALSMLKGSTVELTIVEDDNPAVRTPLEW--RQAIYEEKLAQARESIIADNNIQTLRR 629 + G + L +V+ P + + Q + I+ L Sbjct: 661 FEALAAAYFGENMHLELVDIVPSLPDAPSMLLVYKERQRKHREQIEHDAHSHPRIRALLH 720 Query: 630 FFDAELDEESI 640 F E+++ I Sbjct: 721 AFGGEVEKVDI 731 >UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE33_ACHLI Length = 564 Score = 350 bits (898), Expect = 8e-95, Method: Composition-based stats. Identities = 148/432 (34%), Positives = 241/432 (55%), Gaps = 12/432 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R +RP+ F DV GQ+ ++ L N L +I HAY+FSG RG GKTS+A+++AK Sbjct: 1 MSYVALYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG CD C +++G D+IEIDAAS V++ RDL D V+YAP+ G++ Sbjct: 61 ALNCLEAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP++V F+LATT+P K+P TILSRC +F K +++ Sbjct: 121 KVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFDFKNIEM 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L+ I+N+E++ P AL +AR AEG +RDALSL DQ ++ + +++ + + + Sbjct: 181 DQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFTNDEITEEDIYTV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L L++ + ++ + L+N+ G + ++ +++ L + + ++ P Sbjct: 241 SGGLSRRYINELLKVIYLKQPQKALDLLNQIIKDGKDIARMVSDIILALRDVLLDKIRPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D+ I+ + I Y L ++EL + +R +E+ L++ + Sbjct: 301 KKYPDLKDIKPNL-----------IYAYLDILNDLQQELKFTTSKRAYLELALIKMINHE 349 Query: 361 PRMPLP-EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + E ++ V ++ QV + P Q P ++ ++ Sbjct: 350 SIEMVSLEDKITHLESDIVKLKELVNKAQVSQEAVKTPVQNIPASRPTNLKALVTVKEIE 409 Query: 420 QRVQGATKAKKS 431 + A + K+S Sbjct: 410 DILNHADRQKRS 421 >UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 Tax=Proteobacteria RepID=A0KY06_SHESA Length = 1040 Score = 350 bits (898), Expect = 9e-95, Method: Composition-based stats. Identities = 246/549 (44%), Positives = 320/549 (58%), Gaps = 2/549 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V + + + T P V +T Q L Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERDSQTLP 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + KSE A++ L ++ D + A ++ + + Sbjct: 419 QAAISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQAHSQGFG 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + K E +A + + + Sbjct: 479 ANAETVSRTEALSTPEAKVDSSAESNSVSMPASNIDAEHNQAATVDTASVDQGPSPATLT 538 Query: 541 LNAWKEESD 549 D Sbjct: 539 EPVALSLDD 547 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 113/275 (41%), Gaps = 1/275 (0%) Query: 367 EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGAT 426 E E+ +S + V PT + P PP ++ P + + + Sbjct: 745 EAELHLESQSNVTPTPPLDPNDRPPWEEAPVAAMDETHAPAASVNLQTESPVAAQTAVEH 804 Query: 427 KAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQ 486 A + ++ L + S P + +A Q Sbjct: 805 LGAAPVAAQISPTDREATRVVQALEQAAGQESEPATQSPEPNTPQQPQAKELTQPKTQPQ 864 Query: 487 QKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQVALNAWK 545 ++ + + ++ + LA + D W ++ L + V Q+A+N+ Sbjct: 865 TQQPASVQSQSSETVQPTSSTALALAQSITGHPLDLHWYKLMASLEIGGRVRQLAVNSIC 924 Query: 546 EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQA 605 + N + L L+ Q+HL A ++L +AL+ G+ ++ +V +PA TPLE R+ Sbjct: 925 QVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALGNPRQVEVVIGTDPARETPLEMRKR 984 Query: 606 IYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 985 FHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1019 >UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and tau n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4B Length = 522 Score = 350 bits (898), Expect = 9e-95, Method: Composition-based stats. Identities = 134/412 (32%), Positives = 220/412 (53%), Gaps = 3/412 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RPQ F+D+VGQEH+ L N + L RI HAYLF+G+RG GKT+ A++ A+ + Sbjct: 2 YLTLYRKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAYLFTGSRGTGKTTAAKIFARAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ + PC C C+EI +G FV++IE+DAAS V+D R + + V Y PA G +KV Sbjct: 62 NCKNSVDGKPCEKCVVCKEIAEGAFVNIIELDAASHNGVDDIRQINEEVLYTPAVGVYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNA+LKTLEEPP +V F+LATTDPQK+P T+LSRC +F + + Sbjct: 122 YIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQRFDFRRISTSD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 I L + E+I E A++L+AR A+G +RDALS+ +Q I+ D +++ V ++ Sbjct: 182 ICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYIDEKITHSKVLKLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--P 299 G +D+ ++ A++E + + +A+ NE +G + ++L + + + + Sbjct: 242 GAVDNALLFEMMNAVIEMDAAKAIAVCNEINQQGRNIKQFAKDLLMHTRNLLIAKTTEQK 301 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + + A + I Y + E+ + R+ +E+ +++ Sbjct: 302 TEILDYTQEHVRELTQQANELAIETIFRYIKNFTELDMEMKTSTFPRITLEVAVIKLCTP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 + S +V + + T+ + Sbjct: 362 EVDLSKDSVLDRMLSIEKQLEEVKKNGIKVVEKASEEAVVTEIERVKATSEE 413 >UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Psychromonas RepID=A1SX03_PSYIN Length = 774 Score = 350 bits (898), Expect = 9e-95, Method: Composition-based stats. Identities = 229/524 (43%), Positives = 309/524 (58%), Gaps = 4/524 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VVGQ+HVLTAL+N L+ R+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TATPCG C +C+ I+QGRFVDL+EIDAASRTKV+DTR++LDNVQY PA+GR+ Sbjct: 61 SLNCEKGVTATPCGACVHCQAIDQGRFVDLLEIDAASRTKVDDTREMLDNVQYKPAQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+T+LSRCLQFHLKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQFHLKAILP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL +ILN E E AL ++A AAEGS+RDALSLTDQA+A G G ++ Q+V M Sbjct: 181 QEIETQLAYILNHEQATFEHAALTVIATAAEGSMRDALSLTDQALAFGSGHIAYQSVLKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D++ L+ + N +V I+E G ++ L + L H IA+ Q+ P Sbjct: 241 LGSIDNNHLHYLLHFIASGNVSKVFLKIDEFVHLGADFAMLHQTLASLCHEIALSQMQPK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ LA + P ++QLYYQ + G K+ +AP+ ++ EMT++R LAF Sbjct: 301 Q----NVTQKSAVQLLAERLTPEEVQLYYQIAVQGYKDYAFAPNGKIAFEMTVMRLLAFK 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E + + + P+ E Q AA Q +Q Sbjct: 357 PANYISLDERQLGNPNSAEASDAQQSNIAAASESVESVEIAEAPVIENLQQNPAASQIVQ 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + +S + + +++ Q EK E + Sbjct: 417 QEPKSADSVQSTSPSVEPLQRSAASSVPPPIERQPEPQQNQSAPPSEKIAPVAEVSHSRN 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 524 + K A + A+ + D + Sbjct: 477 MLRSHRLKRESAKKNQATTTEQPASVVASGAENVTAEFKADKYQ 520 Score = 80.1 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 2/285 (0%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + +P S A P + + + + Sbjct: 491 NQATTTEQPASVVASGAENVTAEFKADKYQMSGIDEDISSTPDLQGVNRNNAIADNLSAI 550 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + + E + P ++ + ++ + A S + + + + Sbjct: 551 QDNRVDQEIIPLESYQQDQFVPDSDNQEQPADYLSQTMSADYGESRGPENILENKREEKE 610 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + K + + E+ E+ DPWA + ++ L LV+ + Sbjct: 611 PAVAENKDKSSTFLSDNIFVNDDIERA-EIDPGKYVADKLSDPWALAIQKMRLVGLVKLL 669 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQ-QKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A N+ + + + L L+ Q+HL N +L L + G+ + + + T Sbjct: 670 AKNSVMKIVEQQIVLTLKPEQQHLLNNHQLCTQLETKLKVHFGAQMSMYVEVGHVTGKLT 729 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E AIY+ L A+ +I D NI T + A++ E SI P+ Sbjct: 730 AFESELAIYQTYLNNAKTAIKEDQNILTFVSEYGAKVYENSIIPL 774 >UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=A9D7T4_9GAMM Length = 882 Score = 350 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 250/632 (39%), Positives = 345/632 (54%), Gaps = 20/632 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITA+PCG C +C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGRF Sbjct: 61 GLNCEQGITASPCGQCSSCVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L +E + + AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 181 DEISAQLSYVLTQEQLTFDHAALTLLAKAANGSMRDALSLTDQAIAFGAGTVQLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ LSL A+V+ + E +M +I + + G + E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKHVLSLFNALVQGDIENLMRMIGQILSFGADPEEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA++F Sbjct: 301 AAQLSI--YSEQIKAFAEQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVSFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ V + + + P+ + P + + T + Sbjct: 359 PETPVTRWVVDKPAKVIIPERVTGQDNPQQPEAKDKP-VSQDNSNGQPTEVQKEPVSEPV 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + P A + AL ++ + A+ ++ Sbjct: 418 PELVSKPEAAVIPQAEPDDETDDLLALNSEQALILSQASSQGVEPSSLNTAEPDSQAETT 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + ++ +L+ E + +D A +Q + +++ Sbjct: 478 HLDDKAVRLSPPEDPSKVNPPGSNQSELSQPELSPEQLAQD--ADFDAQYGFQQDEQELG 535 Query: 541 LNAWKEESD-NAVCLHLRSSQRH-------------LNNRGAQQKLAEALSMLKGSTVEL 586 D + + S + + + A+ + S + Sbjct: 536 DYQTPVADDVQPIQQTVTPSPQSDVGSGLTGQGPDFQAGTELEDDILAAVLAARDSLLTD 595 Query: 587 TIVEDDNPAVRTPLEWRQAI-YEEKLAQARES 617 + A + P R+ ++ QA Sbjct: 596 LAKTPEESAGKKPEVQRKDFAPPKRQPQAEND 627 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 97/258 (37%) Query: 383 VMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPV 442 TP + + ++ P + ++ A Q + K AA + Sbjct: 597 AKTPEESAGKKPEVQRKDFAPPKRQPQAENDDAAPSSLGGQAIVEVKSDAKAALQSQPVL 656 Query: 443 NNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE 502 A +R A + + ++ V Q V + +A Sbjct: 657 ATAIEDRPPWEESVEVAATENTTSSGGDEQGTDTHPMVSSQVEAQVPVQDQVQTEIQAQS 716 Query: 503 HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRH 562 + P L W +S + + V Q+A+N+ E + L L+ Q+H Sbjct: 717 FDPLPPLGEGEVTGNEVDLNWYRLMSAIDVGGRVRQLAVNSVCHEFTEPLSLLLKPIQKH 776 Query: 563 LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 L A +L EAL + G+ ++++I + TPLE RQ + E AQAR+ ++ D Sbjct: 777 LAAEIAIVQLEEALGKVLGAEIKVSISVGVDGDRETPLEVRQRFHREIQAQARQGLLTDT 836 Query: 623 NIQTLRRFFDAELDEESI 640 N+Q L AEL+ +S+ Sbjct: 837 NVQWLMSQMGAELENDSL 854 >UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8W3_ATOPD Length = 755 Score = 350 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 146/612 (23%), Positives = 246/612 (40%), Gaps = 44/612 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + ++ HAYLF G RG GKT++ARLLAK + Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAIL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C++C+ I G+ D+ EIDAAS T V++ R+ ++ YAP G+ KV Sbjct: 62 CHEAPGHLPDGTCEDCQLIAAGQHPDVFEIDAASNTGVDNVREEIISRASYAPVCGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+ TILSR +F +++ ++ Sbjct: 122 YIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSRVQRFDFRSIAADE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L + E +E A+ L+ R A G +RDALS +Q G G +S Q V +LG Sbjct: 182 MAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVYGGGVISEQTVRDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 S A+ + + + +N G + E+ + + + + Sbjct: 242 QSSGSLINSAALALAQRDISSLFTTVNTLFEGGKDLLQFTRELAAHVRDLYVATAVGVDS 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +A ++ + A+ + L ++ A ++R+ +E+T + Sbjct: 302 PALANSSASTEQLTKEAQAFGSVDRLSRVLTVLGDAANQMRTAVNQRLVLEVTFTKLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + L V++ V P P + AA + Sbjct: 362 NTELSLEALADRVAVLEQQLANGVVSAPVVQNSAAPVHASTPAAPAAPQPTSAPAAAPVV 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + PA A + + Sbjct: 422 AHTSTPVPTPVAAPAPAPTQQSAPELPSQPEPKP-------------------------- 455 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ--VSQLSLPKLVE 537 V+ P + A + P ++A+ W V Sbjct: 456 -----TAATVPVSAPAPVAAATSSQPAPVPKEVDQSDALLARQWKEVSKVCTSKNAAHAA 510 Query: 538 QVALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + + + + + + L + R L+ + E ++ + G I ++ Sbjct: 511 LLVSSTLESDDGSELVITLPKGSSFAMRMLSTPAVSDFVKECVAQVIGPR---RIKYVES 567 Query: 594 PAVRTPLEWRQA 605 T + + Sbjct: 568 SLAATAISREKR 579 >UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 Tax=Shewanella RepID=A1RIP8_SHESW Length = 984 Score = 350 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 253/547 (46%), Positives = 320/547 (58%), Gaps = 12/547 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 DEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVIALLKALTDADITVLMQTSAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 CAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V +P V P +A + + Q Sbjct: 386 PEKPVKRWQVE-------SPAEVSLPVGQTSTSLAALATSAAEKKTDLVEQPTDVNVHAA 438 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A +A A + P + A + Sbjct: 439 VEINAPSDTA---DSALFAEQTLIISQALSQGYKLSESIAPTSIEIPVAAISQSEDTKVE 495 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T ++ VV + + + +A I +D +A+ S+ E VA Sbjct: 496 TLVSTNEQAVVNNTDSDTQLDYVYGHGDYTQDVAPLDIYQDDYASFSSESYSSLTQEMVA 555 Query: 541 LNAWKEE 547 A Sbjct: 556 EQATINP 562 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 8/283 (2%) Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 P+ + P PQ A +V + Q ++ Sbjct: 664 PKAVKAVSQSVESIDSEFDFDDDFEPAPQMDGGFAQSVTQANKNPEASQPLTQNGQITQN 723 Query: 426 TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVM 485 + E + A+ PV + P + Sbjct: 724 GQKPSGEKPVSVDDPNDRPPWEAAPATNMQHPVVHPVSALEPVVPTAMQDELAPIDQAPH 783 Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD--------PWAAQVSQLSLPKLVE 537 +++ P + + ++ + W ++ L + V Sbjct: 784 TPVSLMSDPIEDAVKESLTEPVTGLSNQTGLSVVQSVSGNPLDLHWYKLMASLDIGGRVR 843 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 Q+A+N+ + + + L L+ Q+HL A +L +AL+ G+ + +V +P Sbjct: 844 QLAVNSVCQAQSDPLPLLLKPDQKHLAADVAIVQLEQALTAALGNPRRVQVVIGSDPKRE 903 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 TPLE R+ ++E L QA++S+I D+N+Q L + AELD +++ Sbjct: 904 TPLELRKRFHQELLQQAQQSLIKDDNVQWLIQRLGAELDTDTL 946 >UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD9 Length = 600 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 149/497 (29%), Positives = 243/497 (48%), Gaps = 6/497 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RPQTF DV GQE ++T L + + +I HAYLF G RG GKT++A+LLAK Sbjct: 3 MAYKSLYRTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCG C+NC++IE G D+IEIDAAS VE+ R L+D V+YAP +G++ Sbjct: 63 AVNCTGNP--KPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC +F L Sbjct: 121 KVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFDFTRLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ +++++L EE ++ +L+L+AR A G +RDALS+ +Q +A D +S + + Sbjct: 181 QEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAYNDDHLSINDIHTI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D +L++ ++ N + ++++ GI+ + L +++ +L I + + + Sbjct: 241 YGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDILKDIVVYRNTKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + I + + L+ ++ A D + E+ LLR Sbjct: 301 AS-IMSVMTQKDLENIVPYITSDECFSFIDILMDASEKYIRATDPHIYFELALLR---LC 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + P ++ V + V P V A ++ Sbjct: 357 NQEHAPSQKIEYTPIKEEPVKPVEVKKVEVKEEPIEEIMEEPVFEPIEEEIVEPAIEKKA 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + T N + R + + +++ Y Sbjct: 417 EQPVPQFNYEKKEEPETYESDDNIEVDQSDILNILVQADRKILNEVQEKWPVIRRYMANM 476 Query: 481 TTPVMQQKEVVATPKAL 497 T P A Sbjct: 477 NTAKAASMLSQGHPVAA 493 >UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=Peptococcaceae RepID=A5D6B1_PELTS Length = 558 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 148/443 (33%), Positives = 227/443 (51%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+TF +++GQEH+ L N + GR+ HAY+F G RG GKT+ A++LAK Sbjct: 1 MTYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PC C++CR + +G VD+IEIDAAS +++ RDL + +++APA GR+ Sbjct: 61 ALNCTGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDEVHML+ +FNALLKTLEEPP H +LATT+P ++P+TILSRC +F + + Sbjct: 121 RVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ + + E AL+L+ARAAEG LRDALS+ DQA A G +V+ V + Sbjct: 181 ADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ D + + R + L++E A G + E+ G L + + ++SP Sbjct: 241 LGTVRTDALDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYLRALLLEKISPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + RM A + + + +++ ++ + +E+ L++A Sbjct: 301 TPAGEAWGDTARMAAQAAEFSEAGLVRAVEIIARAEQDMKWSAMPGIVLELALVKACRPE 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 LP V P +A + V + Sbjct: 361 AGWDLPSLAARVAGLEEKIKLLAPAEAPVKRPPAAAKAASAPRQAAPAPVPVAVPALPQK 420 Query: 421 RVQGATKAKKSEPAAATRARPVN 443 +VQ A A + Sbjct: 421 QVQEAGGPGGPAEAVSLEQVREA 443 >UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match) n=3 Tax=Frankia RepID=Q0RT17_FRAAA Length = 1016 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 222/476 (46%), Gaps = 10/476 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEQGPTPEPCGVCDECVGIRTGASMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 +R L I +E + +P L L+ RA GS+RD+LS+ DQ +A D + A Sbjct: 180 GVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGADDDGLHYDRAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ +G + ++++ + G + ++L L + ++ P Sbjct: 240 LLGMTDGVLLDETVDALARHDGAALFTVVDKVVSAGHDPRRFATDLLDRLRDLIIMAAVP 299 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A L + RMR A + P ++ L G E+ R+ +E+ L Sbjct: 300 DADARGLLESFSPDQIDRMRAQAAAVGPAELSRTADVLHGGLVEMRGTTSPRLMLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL + +V+ ++ P ++ Sbjct: 360 RALLPAASADPAALLTRLERLE---RRSVLAAPDSAAAHPASAPGFGPDPAAGSSPFGGV 416 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 R A A A P A + P + + AP Sbjct: 417 NGPDGPRGMPGPPGPDEAAAPARTASPARPAPAHSARAAAAPASQGPASGSWDAAP 472 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 133/424 (31%), Positives = 227/424 (53%), Gaps = 7/424 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+V+ARK+RPQTF +V+GQEH+ ++ ++ +I HAYLFSG GVGKTS+AR++AK Sbjct: 4 NYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G T PCGVC +C +IE G +D+IEID AS +E+ R +++NV+ +P G++K Sbjct: 64 LNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH ++ +FNALLKTLEEPP HV F+LATT+ +++ TI SRC Q+ K+L +E Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSLGIE 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSA 239 + L+ IL++E+I ++ A+ L+A+ A GS+RD+ ++ ++ IA + +++ V+A Sbjct: 184 DLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVNA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + M+E + + + + ++ + ++ + + M++ Sbjct: 244 VVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIKSGI 303 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM---TLL 354 L ++ A +I+ +L + + A + R EM LL Sbjct: 304 DDIKLLEITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEMRMLLLL 363 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + + S V S A P P+ + Sbjct: 364 NTDNLIRPVDIISSNMQSVSSVSVNEDYGFESVSNNNNASSNNASAVNQPKPQYDVPLNP 423 Query: 415 ARQQ 418 ++ Sbjct: 424 NDKR 427 >UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Tax=Bacilli RepID=Q4L3D4_STAHJ Length = 571 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 211/382 (55%), Gaps = 10/382 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N +S G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C C+ I QG D+IEIDAAS V++ R++ D V+YAP+ ++ Sbjct: 61 AINCLNPQDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI +L + E+ + ++ AL+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 EQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ L + +++ N + ++ + G E L+ +M+ + M Sbjct: 241 TGSVDEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIYFVRDTIM-----N 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 N+ A + M + + + ++ ++ + E+ L++ Sbjct: 296 KTVNNHAEFDALM-----NFDLDMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMV 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTA 382 P V A Sbjct: 351 KSQPDTVTNVATTQVASQPNNE 372 >UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfitobacterium hafniense RepID=B8FY14_DESHD Length = 554 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 141/451 (31%), Positives = 235/451 (52%), Gaps = 3/451 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ F D+VGQ+HV L N L ++ HAYLFSG RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C C I+QG +++ EIDAAS +++ RDL D V+ + ++ Sbjct: 61 ALNCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPE V F+LATT+ K+P+TILSR +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ + EP ALQ++A+ +EG LRDALS+ DQ + DG++ + V + Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL-DGKLGVEQVYQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ + LV+ ++ + + + + E +G++ ++ E+L + + + + Sbjct: 240 LGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYAST-Q 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + + + + LL G +L YA + R+ E+ L++ + Sbjct: 299 AFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDS 358 Query: 361 PRMPLPE-PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 E P+V + ++ + + + + E L Sbjct: 359 QPGYSKESPQVLERLQELEEEIKNLSTGKSRQESKGELPKKVNERSSEPPGHKKPELPPL 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERL 450 Q ++ ++ + + + LE++ Sbjct: 419 QDKPAISQGGETAALSIEQVQGRWGDILEQV 449 >UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 Tax=Proteobacteria RepID=A3NA70_BURP6 Length = 826 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 220/490 (44%), Positives = 288/490 (58%), Gaps = 1/490 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE IA EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD + L++A+ A+G +++A+ +E A R + + A L ++ LLHRIA Q +PA Sbjct: 241 LGTLDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAAD-LRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P SA + AAR + Sbjct: 360 PATTGGGAPAGGVPARVAGAAPKSGARAAAAVGASAVPAVTGATGAALAPKAAAARAATR 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A +A + A+ +R + A + Sbjct: 420 AEAPPAAPARPAAAERGDDASDGDAPVPAKANARASADSRCDERDAQPPADSGSASGAAS 479 Query: 481 TTPVMQQKEV 490 + P E Sbjct: 480 SAPPDTAFES 489 Score = 96.6 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 80/283 (28%), Gaps = 6/283 (2%) Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 P V R + A A + + A A + +V Sbjct: 533 TPAAGAPVSRATGAAAALDVLRNAGMRVSSGRGAGAGAGAARPAAGPAASPTKPAPRAQV 592 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 T ++ A + P + + Sbjct: 593 SVPTPRARAATGDVPPNGAARAEARSESRGAPPPWEDIPPDDYVPLSMDDGFIPPDDGFV 652 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI-ERDPWAAQVSQLSLPKLVEQVAL 541 PV T L + +AI W + L L + Q+A Sbjct: 653 PVFDSGPDDVRVAPKPAPAPPVDTRPLPEPIPLDAIGYDGEWPTLAASLPLKGVAYQLAF 712 Query: 542 NAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 N+ + L + Q + KL AL+ G V++ + PA RT Sbjct: 713 NSELTAADGGTLKLAVPVPQ--YADAAQVAKLKAALADALGKPVDVAVEVG--PARRTAA 768 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A ++ +A + + AD ++ L R F A + E SIRP+ Sbjct: 769 ALAAAERAKRQREAEQEMSADPFVRQLLREFGASIVEGSIRPV 811 >UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCQ4_PLALI Length = 682 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 167/570 (29%), Positives = 269/570 (47%), Gaps = 3/570 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLAR++RPQTF++VVGQ+ + L N + GR+ HAYLF+G RGVGKTS+AR+ AK Sbjct: 5 NYTVLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKA 64 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + A PC C+ CR + G+ VD+ EID AS ++D R L NV R R+K Sbjct: 65 LNCPNAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSMRTRYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP+ VKF+ TT+P KLP TILSRC +F +++E Sbjct: 125 VYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGTVNIE 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I N E + A++L++R A GS+RD+ SL DQ +A G V+ V +L Sbjct: 185 SIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADVHRLL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--P 299 GT DD+ + LV+A+++ + R + +++A G++ +AL +++ L + + Sbjct: 245 GTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDLMVTAAGVKG 304 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + R+ A I Q L + ++ A R E+ L+R Sbjct: 305 IALLGATESSRSRVETQAEAWGLKTISAALQILAEAKIKMARATWGRALTELALVRITLL 364 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 L E Q + A ++ P S P V + + + + Sbjct: 365 EDLSRLDELIARFQGKSIPATSSSGRLATDRPMNSSPRVLPPPVAIIQGSPESRDLPDVQ 424 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + + A N + + T V + S++ + A+ E Sbjct: 425 ESQPEFQSQTEPQHHQHATANTSNATVVPVSSDATVSVDSSAEASSISTSLAEPELVFQP 484 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + L+ ++ E + + L P +V ++ Sbjct: 485 GNEATLLEYLRTKNTDLTGIHLQRATHCQITGPTQLEIVISANHRFEQQCLEQPNIVSKL 544 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQ 569 + + ++ L + H ++ Sbjct: 545 -EQQLRTATGTSIRLRFTTGSAHESSESNP 573 >UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 Tax=Burkholderia glumae BGR1 RepID=C5AFH6_BURGB Length = 861 Score = 347 bits (889), Expect = 8e-94, Method: Composition-based stats. Identities = 227/526 (43%), Positives = 300/526 (57%), Gaps = 2/526 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE +A EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ ++G ++A+ +E A R + + L ++ GLLHRIA Q +PA Sbjct: 241 LGALDQTYMVRLLDAIASSDGPEILAIADEMALRSLSFSTALQDLAGLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAAD-LRRFAEALSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P P+ S A Q Sbjct: 360 PAASGGAPVPGAAPAVAAGGRRAAAPVAPAGAGARDAAAHAMPPVAAAASARPAPAPVAQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A + P A A + A +R A + R + + ++A A Sbjct: 420 AAAEPPPAAVAAPRAVPPAAARDVATAKRPAELPVRAEQARP-AESDEAAAVAPRESAPD 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + ++ AL TP E R Sbjct: 479 LADEPAESPLASQLESSDVALGAGPTPPAEPAAMLEPSLRADTPPM 524 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 65/213 (30%), Gaps = 5/213 (2%) Query: 432 EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV 491 A+P AA ++ P A PV Sbjct: 634 PTPRPRTAQPSRPAAAADPSAPPPWDDMPPDDYLPISADDHYGPPPDDGYLPVFDSSPDD 693 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDN 550 + P A W + L+L + Q+A N+ Sbjct: 694 VRVAPQPAPAPADTRPLPPAIALDAIGYAGEWPQLAATLTLKGVAYQLAFNSELISAQGG 753 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 + L + Q + KL AL+ G VE+ + PA RT ++ Sbjct: 754 VLKLAVPVPQ--YADAAQVVKLKTALAEALGKPVEVAVEVG--PARRTAAALDAVERAKR 809 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +A + I AD +Q L R F A + E S+RP+ Sbjct: 810 QREAEQEIGADPFVQQLIRDFGARIVEGSVRPV 842 >UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Tax=Marinomonas sp. MED121 RepID=A3YHQ6_9GAMM Length = 823 Score = 347 bits (889), Expect = 8e-94, Method: Composition-based stats. Identities = 238/606 (39%), Positives = 331/606 (54%), Gaps = 12/606 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFIELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG C +C EI +GRFVDLIE+DAASRTKVEDTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGISPEPCGTCGSCVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + LE +L E ++++ L + +AA GS+RDALSLTDQAIA G+G +S V++ Sbjct: 181 PGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAFGNGHISETDVTS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q + L++A+V+++ ++ L+N+ A ++ A+ +L LLHRIA+ Q P Sbjct: 241 MLGLVNQAQVVGLLDAIVQSDAANLLKLVNDLADYQPDFVAICASLLDLLHRIAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + +++ +A+ +P IQL+YQT+LIG+++LP A + G EM LLR +AF Sbjct: 301 GALEDQLGD-LAKVKLIAQQVPSEVIQLFYQTMLIGKRDLPLAHSPKAGFEMLLLRLIAF 359 Query: 360 HPRMPLP---EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P P +A + + Q T P+ ++ A Sbjct: 360 RPAQATSVSTSPVALVTHTPESTSSASDASEPLIQNEIDSSVQEITAKYPDVKHEIDQAI 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V+ + K + +P+ N L+ Q A+K + Sbjct: 420 SVATDVEKNLEPLKPLTNEPSTNKPLINKTLKGEGDKATIDQQGEQKDETLNVTAEKHSP 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEH---EKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A+ V Q + T + + ++ I +D + Sbjct: 480 VNSASASVSSQTTEMDTKPPFEADEKPKVLDQAAAKEKMADLNKIMQDQGETKPDSAETL 539 Query: 534 KLVEQ--VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 V + +A + V L R + LS + L Sbjct: 540 ASVTETKLAAKELDSLPEQDVEASLNEDDAAAQQRQTPA--STGLSQQTQTDQALNNDAS 597 Query: 592 DNPAVR 597 ++ + Sbjct: 598 EDSGLE 603 Score = 92.4 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 35/312 (11%), Positives = 88/312 (28%), Gaps = 13/312 (4%) Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 D+ E + + A +P Q A Sbjct: 509 LDQAAAKEKMADLNKIMQDQGETKPDSAETLASVTETKLAAKELDSLPEQDVEASLNEDD 568 Query: 403 VPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV 462 + + Q + A SE + + + + + Sbjct: 569 AAAQQRQTPASTGLSQQTQTDQALNNDASEDSGLEVDGSEDGDLEDSDSEDDIELIDDHA 628 Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVV------------ATPKALKKALEHEKTPELA 510 + A ++ + + + + ++ ++ Sbjct: 629 MDRSAELVAVMQSQTIEVEEIAPITETEALVEKAIATNLEDVSYTKAQIIVQPALGEKVE 688 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA-VCLHLRSSQRHLNNRGAQ 569 + W +L L LV+ + +N+ E+ + L + H+ N+ Sbjct: 689 PIDHFSKMTMQMWWLIAPRLPLTGLVQNILMNSCMLEAGEQGIKLEVPLEYGHMLNQVRY 748 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 +++ A+S + V L I ++ + T E+ + + + +A E + A +Q L Sbjct: 749 EQIQGAISHYFDAVVPLIINTVEDVSGVTAEEFAASKRAQAMQEAIEHLNAHPIVQALSS 808 Query: 630 FFDAELDEESIR 641 +L +S++ Sbjct: 809 TMGGQLIYDSVK 820 >UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacillales RepID=C2H810_ENTFC Length = 581 Score = 347 bits (889), Expect = 9e-94, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 252/583 (43%), Gaps = 9/583 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WR Q F D+VGQ+ V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G D+IEIDAAS VE+ R + D YAP + + Sbjct: 61 AINCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEP E V F+LATT+P K+P TI+SR +F K ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL E I +EP AL ++AR+AEG +RDALS+ DQAI+ +G ++ + Sbjct: 181 ADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L D+ S + A V+ + +N+ A G E L +ML + M Q +P Sbjct: 241 TGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + I ELA+T+ + + L + E+ + + +E+ ++ Sbjct: 301 LVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLAQL- 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +P ++ V + + Q +Q Sbjct: 360 PSASVPSAKMALADDQIVKQLQQEIKELRNEIKELRSNTGTVNTKVQPVQQTNHKKQTST 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K A + E L Q + ++ A Sbjct: 420 YRVPTERVYKVLREATRQHLNQVKEVWEDLLMSLSVTQRAMLKASEPVAAGPTGLVIAFD 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V Q+ + + A I R+ W + + L + E+ A Sbjct: 480 YEIVCQRAANDEELQLSVHNNLSRMIKDYAPDPV--YITRESWPE-LRKNYLTQAQEEGA 536 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 N++ E L Q ++ L GS Sbjct: 537 ENSFASEESEGEIELLPQEQ-----EVPEETLVVKAEEFFGSE 574 >UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUQ2_XYLCX Length = 926 Score = 347 bits (889), Expect = 9e-94, Method: Composition-based stats. Identities = 166/678 (24%), Positives = 263/678 (38%), Gaps = 70/678 (10%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFAEVIGQEHVTGPLMQALRSGRVNHAYLFSGPRGCGKTTSARILARTLNC 63 Query: 65 E----TGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 TPCGVC +C E+ +G +D++EIDAAS V+D RDL + +APAR Sbjct: 64 HANTPQTPLDTPCGVCPSCVELARGGSGSLDVVEIDAASHGGVDDARDLRERATFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE HM+S FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + Sbjct: 124 RYKIFIIDEAHMVSPAGFNALLKIVEEPPPHIKFVFATTEPDKVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + + LE + E + + L+ RA GS+RD+LS+ DQ IA + G V Sbjct: 184 PPDVLAPYLESLCASEGVTLGGGVVPLVVRAGGGSVRDSLSVLDQLIAGASTGVVDYDLA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG +V+A+ +G + ++++ A G + + ++L L + ++ + Sbjct: 244 VGLLGYTHSSLLDDVVDALAARDGASLFRVVDQLIASGHAPQRFVDDLLERLRDLIVIAV 303 Query: 298 SPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 S A G A RM A + ++ + E+ A R+ +E+ Sbjct: 304 SGDAAGAVLRGLPADQLDRMAAQASRLGVAELSRAADLVNAALTEMTGATSPRLHLELLC 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFA------------------------------------- 376 R L + Sbjct: 364 ARLLLPGADEGAAGLAARIERLERGGLVAAASVAAPVRSGRQADGGAPTAGADVGGLRGA 423 Query: 377 ------------PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 P A + ++ P P +S V A Q V Sbjct: 424 AAVRAAMQASRRPTAEVQGDATEGAGARTVASAPAQDPAPAPGRSSVVAAPPQGDSGVGH 483 Query: 425 ATKAKKS---------EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 A + S +PAA + A V+DR + + Sbjct: 484 AVEPVASGPAAETVGGDPAAGPAVDAEPDVEPVPAAPVSDRPVDDELLHDEPVPDEPLDD 543 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 E +A E +A I R W + + P+ Sbjct: 544 QPLDGPPVAAAPAEPHVGAAPGARAEEPPAPDPASAGGITTEIVRRRWPEVLGSIQNPRA 603 Query: 536 VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + +A D + L + G + +++A+ G V + IV Sbjct: 604 QAFLGEHAQVLSLEDGVLTLGFTPAVVTQARMGRPETISDAVYETLGVQVRVEIVAGSGG 663 Query: 595 AVRTPLEWRQAIYEEKLA 612 + ++ Sbjct: 664 PRPRDAAPTRRTQDDAAE 681 >UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5D8_LARHH Length = 769 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 230/561 (40%), Positives = 309/561 (55%), Gaps = 6/561 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPRRFADLVGQEHVVRALSNALAGQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++++N QYAP GR+ Sbjct: 61 SLNCERGVGAEPCGECAACRQIDAGRFVDLLEIDAASNTGIDNIREVIENAQYAPTAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFALRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I E AL LLARAA GS+RDALSL DQAIA G+G V V AM Sbjct: 181 QQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLLDQAIAYGEGVVREDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+ A+ + +G V+ E AARGI ++A L E+ L ++IA++Q P Sbjct: 241 LGAVDRRYLFTLLAALADGDGAAVLDEARELAARGIGFDAALEELAQLFYQIALMQAVPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D + LA ++ P D+QLYYQ + G ++LP APD ++G M LLR LAFH Sbjct: 301 AIADDEPE-REALAALAGSMAPEDVQLYYQMAVQGGRDLPLAPDEQLGFNMALLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ P + + +P Q P + + A A+ + Sbjct: 360 -----PQTGSPALAAPAAVAGGIASPPQAPAGMTAGARPAAPAGTATDDDDDPASGRGAA 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R A ++S A A + S P + + A Sbjct: 415 RAAIAKALRRSPVERPVVATRQAVPADTPVESGLPATTGTSRPGDTGQPASVPAGTTAPA 474 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P + P + P A A P Sbjct: 475 PVPASASGLDSSLPWDDEVHDSLSAAPVEAVPAAGLGQASLPHEDAYDCPEREPAASTPE 534 Query: 541 LNAWKEESDNAVCLHLRSSQR 561 + A + AV L ++ Sbjct: 535 VPAGASPAGEAVRLASGPAEA 555 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 5/256 (1%) Query: 392 QPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATK-AKKSEPAAATRARPVNNAALERL 450 Q + A P E + A + A A + + Sbjct: 512 QASLPHEDAYDCPEREPAASTPEVPAGASPAGEAVRLASGPAEALPWDDETAHGLNADEQ 571 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A+ D A P+++ + + + TP + P A+ E + + Sbjct: 572 AAHDDMFGAPAEPASVPVSSSGQAVTTAPDVTPPADVRAPDVMPDAVAVPAESAEALAAS 631 Query: 511 AKLAAEAIERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVC-LHLRSSQRHLNNRG 567 +A W A V L L +A NA + + L L + R + Sbjct: 632 GPVATGTGLTGDWIALVDTLKDSLGAKARLLAQNAELVAREGELVRLRLPGAHRFVAGAD 691 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + LA+AL+ G V + + D T L R + EKL AR +I D + L Sbjct: 692 YRSALADALATHWGQPVRIEVEIGDV-VGETHLMQRARVQGEKLELARSAIEQDPRVAEL 750 Query: 628 RRFFDAELDEESIRPI 643 +R F A + ESI+P+ Sbjct: 751 KREFGAVVVPESIQPL 766 >UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0B1_9SPHI Length = 575 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 215/448 (47%), Gaps = 3/448 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ H+ T L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T CG C++C + +++ E+DAAS V+D R+L+D V+Y P G+ Sbjct: 63 INCLTPTEDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQSGKR 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPPE+V F+LATT+ K+ TILSRC F K ++V Sbjct: 123 KVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRIEV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + + L +I +E I E AL L+A+ A+G LRDALSL D D ++ Q+V Sbjct: 183 KDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSADRHITYQSVVK 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D + +A++ + V+ +E +G + + + L + M + Sbjct: 243 NLHILDHDYYFKITDALLAQDMPLVLLYFDEILRKGFDGHIFIAGLGAHLRNVMMCKDPA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L ++ R E A+ + + + + R VE+ L++ Sbjct: 303 TVKLLEVSEKVKQRFAEQAQNASASFLLSALNLANDCDLHYKSSKNPRFFVELVLMKMAN 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + V P P T V Q S QQ P + + Sbjct: 363 LNRVIDWAQNPVEIAGQPPADPEKKKPETNVAEQNNSHQQQQAPPPAKMSLEYTKKENPK 422 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAA 446 + + + +N Sbjct: 423 TPVIPNKPDVTLKVDTSNGSVQASDNTP 450 >UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus RepID=A8W2Q1_9BACI Length = 600 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 171/638 (26%), Positives = 279/638 (43%), Gaps = 42/638 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WRPQ DVVGQEH+ L N L ++ HAYLFSG RG GKTS A+++AK Sbjct: 1 MAYQALYRVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C I+ G VD+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEQAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFAPSGASY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++E I+ + +A +P AL ++ARA+EG +RDALSL DQAI+ D V+ V ++ Sbjct: 181 HTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADTSVTLDDVLSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D ++EA+++ + I+ + G + + + + L + MVQ +PA Sbjct: 241 IGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFMEDFIFLTRDLLMVQAAPA 300 Query: 301 ALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + R LA + + + L ++++ +A + +EM +++A Sbjct: 301 LDESGDRKLGDQRFEILASKASQSWLFALMEKLNHFQQQMKWASHPAVFLEMFVVQACQM 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 R P + + Q + A P + SQ A ++ Sbjct: 361 PSREPEKAGLPEEVRQQISTLEHKLADLERRLQQAPSQAPAGRPDQPASPSQPQAPVRK- 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + Q A+ + A Q + A + Sbjct: 420 -QPQAASTGASRANMQRVKGVLNEATKAHLKAIHQKWAQIQDTVKQQNVAAS-------- 470 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A + + L E + + D + + + + Q+ Sbjct: 471 AWLNDCKPVVASSGHYVLAFRNEMHR-----------GMVDDKFRDLIEGVVSQVMDTQL 519 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + E+ V Q+ +A G+ + + + Sbjct: 520 VMYTLLEQDWEEVKAAFVKEQKK----------KQASQPADGN--QESEDVPQDGDSEAA 567 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + EE +A + + F ++L Sbjct: 568 GQAVEDEPEEDQGEA--------VVDEAIKMFGSDLVR 597 >UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 Tax=Dehalococcoides RepID=A5FRM9_DEHSB Length = 570 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 164/577 (28%), Positives = 255/577 (44%), Gaps = 17/577 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ QV RKWRPQT AD+VGQEHV L N LS GRI AYLF G RG GKTS R+LAK Sbjct: 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAK 63 Query: 61 GLNCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC T PC C C I +G +D+IEIDAAS T V+D R+L + VQY+P+ Sbjct: 64 AVNCTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLAN 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS + NALLKTLEEPP V F+LATT+ K+ TI+SRC +F + Sbjct: 124 YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + +L I E I EP AL+L+AR+A GS RD +L Q + ++S V A Sbjct: 184 LVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG D++ +L E +++ + + + +N A G++ + E+L L +I +V Sbjct: 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGS 303 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A + +++++ +I + A + E+ L+ A Sbjct: 304 ESSLELTADEKKALQKVSGITNLENITKAIKAFSQLDFSSDTASS--LSFELALIDA--- 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P + A A P+ ++ P ET ++ + + Sbjct: 359 -SLDKNTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAETA 417 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + TK + A + +E+ ++ + Sbjct: 418 ATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEEKVLIGAGDIIEQLKVSWKSILDQ 477 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A + + V A + + +K + + + ++ +L K+ ++ Sbjct: 478 APDNLKRSAAVAILRSAGVRPVSMDKN------IVTLSFKYKYHKDKIEELENRKVTAEL 531 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL 576 N L S + QKL + Sbjct: 532 ISNFV----GKTCTLVCISEAETNHLVKQAQKLGAQI 564 >UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CH16_9PLAN Length = 484 Score = 346 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 147/449 (32%), Positives = 229/449 (51%), Gaps = 2/449 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLAR++RPQ F++VVGQ V AL N + R+ HAYLF+G RGVGKTS+AR+LAK Sbjct: 6 MQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAK 65 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG C+ C+ I G VD++EID AS ++D R L NV R ++ Sbjct: 66 ALNCPHTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVNVRSMRSKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP +VKF+ TT+P KLP TILSRC +F ++ Sbjct: 126 KIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEE 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E ++ A+QL+AR A GS+RD+ S+ DQ ++ G+ ++ ++V + Sbjct: 186 NSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT D++ + L++A++E + + + A G++ + ++L L +++V + Sbjct: 246 LGTASDERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDLSVVATGAS 305 Query: 301 ALGNDMAAIELR--MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + R ++ A +Q L R + A R VE+ L+R Sbjct: 306 QVTLLSISEMNRASLQRQAEAWGIQTCLAAFQILNEARNRMFRASHGRALVELALIRMSL 365 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L + S P P P E+T ++ Sbjct: 366 LEDLDLLSRFLSSGGQIPAAPAAVRQASPSLSAAAVSQPVSEPPTPPQESTEPSSDQKKI 425 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAAL 447 ++ + + ++ A Sbjct: 426 EKKNEIESPVASESIESSPPAAETVPFRP 454 >UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C4ZNJ5_THASP Length = 716 Score = 346 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 214/517 (41%), Positives = 289/517 (55%), Gaps = 2/517 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F +VGQEHV+ AL + L+ GR+HHA+LF+GTRGVGKT+I+R+LAK Sbjct: 1 MSYQVLARKWRPKSFGTLVGQEHVVRALTHALATGRLHHAWLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCG+CD CR I+ RF D +E+DAAS VE+ LLD YAP +GRF Sbjct: 61 ALNCETGITAEPCGICDACRAIDADRFPDYVEMDAASNRGVEEMAALLDKAVYAPVQGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E +A EP AL+ LA+AA GS+RDALSL DQAIA G G+V + VS M Sbjct: 181 GHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAIAHGAGRVEEEQVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ DD ++++A+ + ++A+ + AR + ++A L + L+HR+A+ Q +PA Sbjct: 241 LGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQALATLVHRVALAQYAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +++ R+ +QL YQ + GR ELP APD G MTLLR AF Sbjct: 301 AIADEL--ERARILGYVERFDAEFLQLAYQVAVHGRDELPLAPDDYTGFTMTLLRLHAFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P S P ++ + A Sbjct: 359 PEQPAALGGPGVPSGPDAGRARAPALAAGGPAESGRAAESGVPAEVPARTVASAGIAGPA 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A ++ A + + V AA A+ + + + + R + Sbjct: 419 PAAVPAPAAGADAAIPSAQQTVLEAAAPASMQPGSVPAAQQAVAPAPASAPPRRSAREEH 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + L E + EA Sbjct: 479 AVQPARAAPASVQDVPPWEDLPPEAYADSDLPPPREA 515 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 97/281 (34%), Gaps = 4/281 (1%) Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 + + + A + P +V Q ++ + AA +Q V Sbjct: 437 QQTVLEAAAPASMQPGSVPAAQQAVAPAPASAPPRRSAREEHAVQPARAAPASVQDVPPW 496 Query: 426 TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVM 485 A + P A S P A R + Sbjct: 497 EDLPPEAYADSDLPPPREARNGHDEAYAASAGAHTGAISRARPEPRGGGARRAEEVPSRS 556 Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-W 544 V P+ + A+ AA + W + L L LV ++A + W Sbjct: 557 APLPAVRAPEPATSPAAPTQDAPAASGDAAALLALGDWRGLIRALGLGGLVRELAQHCEW 616 Query: 545 KEESDNAVCLHLRSSQRHLN--NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 E D + L L ++ RHL NRGA ++L + L G T+ + I D +TP + Sbjct: 617 VECGDGVLQLRLSTAHRHLLDMNRGAVERLQDVLCAALGRTLAVRIAIGDISG-QTPAQR 675 Query: 603 RQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + + A+A ++ AD ++ L FDA L E +++P+ Sbjct: 676 DAIERQVRHAEAVAALEADPFVRELIERFDATLVENTVKPL 716 >UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LV54_9FIRM Length = 691 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 160/436 (36%), Positives = 224/436 (51%), Gaps = 1/436 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP +F D+VGQ V L++ +S GRI HAYLFSG RG GKTS A++LAK Sbjct: 28 MAYIALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVC NC +I G +D+ EIDAAS +++ RDL + V++ PA GR+ Sbjct: 88 SLNCEKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TI SRC +F + + V Sbjct: 148 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITV 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L ++ E I E AL+L+AR A+G +RDALSL DQ + ++ V Sbjct: 208 EEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEEN 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ E V+ I E A G + LL E+ L + + + + A Sbjct: 268 LGLIGHEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAELTIHLRSLMIYEAAGA 327 Query: 301 ALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++A + E I L EL + P R+ +E+ LL Sbjct: 328 LAALNLADDTGAALEEQKALFTQAQIMAMIARLHEAMAELRWTPQPRITLEVALLSLCRE 387 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + P + AP A Q + + + Sbjct: 388 NVEDGAEGAPAPTPAAAPAPAEAARVARLEAELAALKAQLSAQPVRAAAPAASPLPTARK 447 Query: 420 QRVQGATKAKKSEPAA 435 + +A S A Sbjct: 448 RAASRTNEAASSGTPA 463 >UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter sp. MED105 RepID=A6GQQ4_9BURK Length = 586 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 220/640 (34%), Positives = 311/640 (48%), Gaps = 68/640 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q LARKWRP+ F +VGQ HV+ AL++ L R+HHAYLF+GTRGVGKT+IAR+LA+ Sbjct: 5 ASQALARKWRPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARA 64 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NCE GI+ TPCG C C EI QGRFVDL+E+DAA+ T+V++ R LL+N YAP GR+K Sbjct: 65 VNCEQGISRTPCGKCQACVEISQGRFVDLLEVDAATNTRVDEMRALLENAMYAPTAGRYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNA+LKTLEEPP HV F+LATTDPQK+P T+LSRCLQF L+ L + Sbjct: 125 VYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPPD 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+ L HIL+EE IA EP AL+LLA+AA GS+RDALSLTDQAIA G V+ V ML Sbjct: 185 QLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSAGHVTEDTVRTML 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D L++A+ + +G+ ++ L N AA + A+L E+ + +R+++ + Sbjct: 245 GAIDQQVVHQLLQALAQGDGKALLELSNALAAASAPFGAILDELAAIAYRLSVAHFAGG- 303 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + ++ L D+QL YQ R EL AP+ +G M L+R LAF Sbjct: 304 -LDADDPDQAALQNLQGAFGAEDLQLIYQIATHARAELHLAPEEHIGFSMALVRMLAF-- 360 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 P +SAP V A Q Sbjct: 361 -----------------------KPGGQGAVTRSAPLAPAVVKATVPVMAAKPAVAQSPL 397 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + A +A A P + A + A+ P+A P Sbjct: 398 PKAAPQAAAPAVADDFDESPPWDTADDLPV-------AQSQPAAPAIKPQPVYNQSASGD 450 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 P V+ K + + E V Q+ L ++ Sbjct: 451 LPSATNWPQVSQEVPAKGLTRQALVQAELVEASREGD--------VLQIVLRTAIKAYTE 502 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + A+ GSTV L + + +T Sbjct: 503 ASMVTRLEGAL------------------------GQYYGSTVRLQMQFGEAQ--QTAHA 536 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + L A++++ D ++ ++ A + S R Sbjct: 537 VQSETRRQALEGAKQALQEDPFLKDIQNLMGATVVSGSER 576 >UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q394_9BACT Length = 558 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 152/549 (27%), Positives = 247/549 (44%), Gaps = 9/549 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR++RPQTF+D+VGQ ++ L N + R+ HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSYVVLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC VC+ C+ I +G +D++EID AS +++ R++ NV +AP+R R+ Sbjct: 61 ALNCVNGPTDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFAPSRARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++Y+IDEVHML+R +FNALLKTLEEPP HVKF+ ATT +LP T+ SRC +F K + V Sbjct: 121 RIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I E E AL +A+ A+G LRD+ S+ DQ + D V++ V+ + Sbjct: 181 NDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFCDDNVTSADVNYV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DDD+ S+ E V + + ++++ G + ++L L + + Sbjct: 241 LGYIDDDKIYSMFECFVNKDTSGALRIVDDILNEGKTPAEFIDQLLLRLRDLLVFSSCGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ + Q L + R + +R+ EM +++ Sbjct: 301 EAVWAEYDES-FIQRFEKSFSGDTLMYMIQMLSVMRIRSTDSLLQRISAEMAIIKLCRME 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + P + + + E + + + Sbjct: 360 SIGALSGLIERITTLEEKLEQVDNIPGKRGSAILLPAESFARQTVSEKSIEEGDVIPPAK 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A V L+ + A L + A + Sbjct: 420 EEKITP-------GIAMEKNEVWGDILKSIQKKKKSTWAFFKEGRLVSSDAGVLVVAFPR 472 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV-SQLSLPKLVEQV 539 +++ K L + E P + + +P + L +Q+ Sbjct: 473 KFLFQKERLEQPEEKKLIENCAKEVVPGFMELKLVLSEKEEPEENRQSQSLDNGGGAQQI 532 Query: 540 ALNAWKEES 548 + E + Sbjct: 533 NDTVFSEPA 541 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 12/161 (7%), Positives = 42/161 (26%), Gaps = 6/161 (3%) Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ--VA 540 P + K++++ E + + W + + K Sbjct: 395 PAESFARQTVSEKSIEEGDVIPPAKEEKITPGIAMEKNEVWGDILKSIQKKKKSTWAFFK 454 Query: 541 LNAWKEESDNAVCLHLR----SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 + + + L ++ + + +EL +V + Sbjct: 455 EGRLVSSDAGVLVVAFPRKFLFQKERLEQPEEKKLIENCAKEVVPGFMELKLVLSEKEEP 514 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + Q +++ ++ ++ FD + + Sbjct: 515 EENRQSQSLDNGGGAQQINDTVFSEPAVKKTLELFDGRVIK 555 >UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZE0_9FIRM Length = 473 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 215/412 (52%), Gaps = 4/412 (0%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L ++RP TF +V+GQE+++ N L G + HAYL G RG GKT++ARL+AK +NC Sbjct: 7 ALYTRFRPNTFDEVIGQENIIKVFLNQLKAGSVSHAYLLCGIRGTGKTTLARLMAKAVNC 66 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 PCG C+NCR I + +D+IEIDAAS V+D R+L+D V Y P+ KVY+ Sbjct: 67 LDPQK-KPCGACENCRSITEESHMDVIEIDAASNNGVDDVRELIDTVAYPPSVAEKKVYI 125 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDP K+P TILSRC++F L+ + + Sbjct: 126 IDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRCMRFDLRRITESDLV 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L + E AL+L+A AEGSLRDALS+ +Q +A +G ++ + V L + Sbjct: 186 KRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILEQVMAIDEGIITREDVLESLHAV 245 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AAL 302 D + + +++ ++ + E+ + N A G + + L ++L L + + ++S AL Sbjct: 246 GDGKIIEIMDGVLSNDLEKAIVTCNNAFDDGKDEKQFLNDLLIYLRNMMLAKVSGELDAL 305 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL-AFHP 361 N + ++ A + I+ ++ A R+ +E L++ P Sbjct: 306 INMHSDDINELKRQASGVSMDFIERAIFEIVRIIDLSKGASYPRILIEAGLIKVSNCLSP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + E + T ++P P + Sbjct: 366 DKSIKKEETKPSGIKKSSNVGKNTNDEMPVTPAETSAPVAKSQEGMAQGKSE 417 >UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunits gamma/tau dnaX n=2 Tax=Parachlamydiaceae RepID=Q6MDZ7_PARUW Length = 522 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 164/522 (31%), Positives = 256/522 (49%), Gaps = 5/522 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARK+RPQTF +V GQE V+T L N + R+ AYLF G+RG GKT++AR+ A Sbjct: 1 MSEYQVIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC+ PC C +CREI G +D++EID AS +ED R + + V YA G Sbjct: 61 KAINCQNSTEDFEPCNQCTSCREITSGSSLDVLEIDGASHRGIEDIRQINETVGYAATSG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHML++ +FNALLKTLEEPP VKF+ ATT+ K+ TILSRC +F+L + Sbjct: 121 QYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + QI +L+ I ++ I E ALQLLA AEG LRDA SL DQ +A +G+++ V Sbjct: 181 PLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLFDQIVAFSEGKINAATVQ 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++LG + + L A E N + + A G + + ++ I ++QL+ Sbjct: 241 SILGLMPREAYFELDLAGKEGNFVKAFEIAYRIFAEGKDLNHFIEGLIDHFRHILLIQLA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + L + A L+ +++ + ++ +E LL Sbjct: 301 GITSPLLTISPKEKQFYERAAHLYTQEQCLDLIDYLIESAQQIRFTHSGKIALEAILLHV 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV-PPQPQSAPQQAPTVPLPETTSQVLAA 415 + H R+P+ + A + + V PP +S PQ + + + Sbjct: 361 IRSHFRLPIEVLVQRLGELEQMLGEASLVNSSVFPPLSKSTPQSSLSTEVKNPPLTPPVP 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + Q T + + ++ A + + + + V P P+ + + ++ Sbjct: 421 LTNNKPSQNLTTSPIEKNLNSSTATSLLSPSTNNCSLFDHFVSEDPTPTQSDLGRSTQKL 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + V + TP L EL KL +A Sbjct: 481 PNKDSPSLVAKLNGDNPTPVHQYDTLFQFAAIELEGKLQRKA 522 >UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 Tax=Gammaproteobacteria RepID=Q0HHZ2_SHESM Length = 1071 Score = 345 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 238/500 (47%), Positives = 311/500 (62%), Gaps = 2/500 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V + + T Q + + + + ++ Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPSTIPAATEQAVNRVENQAEAEKKTPLTSTVDSQPAAT 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + A T +P + A + ++ + + A + ++ Sbjct: 419 EAVQSGFMSEPSVADPTLPQPEISKASQASQALVAEAAQQLLSDEDVSAVDGDDTAGEES 478 Query: 481 TTPVMQQKEVVATPKALKKA 500 E + Sbjct: 479 ALNAALIAEQQVILSQAQSQ 498 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 13/293 (4%) Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 E A P P P T +P + Q Sbjct: 771 LFEAQAGVINASLPAHVAPAPHPQFDPNDRPPWEEAPVDTLADVEPVATSYQGSETARAP 830 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 SQ Q + AT S + T QA + Sbjct: 831 QVSQTPQPIIAPQEPELATGIAHSASIPTLPTDTGAANTKTANSEETRVEQAIAPHPQRD 890 Query: 468 KAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV 527 A + + Q+ +T L +++ W + Sbjct: 891 TAAQPVTQTQTPPQSSEETQQSAPSTALTLAQSITGHP-------------LDLHWYKLM 937 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 + L + V Q+A+N+ + N + L L+ Q+HL+ A ++L +AL+ G+ ++ Sbjct: 938 ASLEIGGRVRQLAVNSICQLQANPLPLLLKPDQKHLSAPVAIEQLEQALTAALGNPRQVE 997 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 +V +P TPLE R+ ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 998 VVIGIDPTRETPLELRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1050 >UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT Length = 564 Score = 345 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 155/466 (33%), Positives = 228/466 (48%), Gaps = 6/466 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVL RKWRPQ F+DVVGQ V L N L GRI HAYLF+G+RG GKT+ A++LAK + Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAV 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C I+ G +D++EIDAAS VE+ R+L + + PA +++V Sbjct: 65 NCLSLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ KLP TILSRC +F +D E Sbjct: 125 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEV 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ + EE+ E A L+AR A+G +RDALSL DQ + +++ + VS G Sbjct: 185 IADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSS-EITLEVVSETAG 243 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV--QLSPA 300 D SL + ++ NG + + I+E + L E+ G + ++ +P Sbjct: 244 LAGRDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFRNLMLLKTMKNPQ 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +++ A L ++ + DRR+ +EM LL+ + Sbjct: 304 NLIVVSQDEYQKLQVQAEAFTLAGTIHAIDVLQAAKERMFRGFDRRVELEMALLKLCSPE 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ-- 418 + + + P P+T Q A + Sbjct: 364 LDESVDAILRRLARLEKQPRAVIPEQAEAAAPSIKPPAAPMESQRPQTKPQGTNAEPEGC 423 Query: 419 -LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 + A + + + PV+ AL++ A Sbjct: 424 GEEPAAEAADMPQEQEPPEDKKGPVDMEALQQGAKRMTDWPEVLEY 469 >UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBE6_9GAMM Length = 636 Score = 345 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 236/643 (36%), Positives = 336/643 (52%), Gaps = 14/643 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+ F ++VGQ HV AL L RIHHAYLF+GTRGVGKT+IAR+ AK L Sbjct: 2 YQVLARKWRPKNFHELVGQTHVTQALTYALDHNRIHHAYLFTGTRGVGKTTIARIFAKSL 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ +++ PCG CD+C+EI+QGRF DLIE+DAASR++VE+TR+LLDNV YAP +G++K Sbjct: 62 NCQKNHVSSNPCGECDHCKEIDQGRFPDLIEVDAASRSRVEETRELLDNVPYAPVKGQYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM S SFNALLKTLEEPP HVKF+LATTDPQKLP TILSRCLQFHLK + Sbjct: 122 VYLIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILSRCLQFHLKNMSER 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 QI L HIL EH +EP AL LLA AA GS+RD+LSL DQA+A G G V T+ V+ +L Sbjct: 182 QISEHLAHILQAEHAEYEPDALHLLANAAAGSMRDSLSLLDQALAYGRGHVRTRDVATLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + + Q L +++ + + + + ++ LL+ +L + +I + QL Sbjct: 242 GAVPEPQLLHMLQLLANGDAPGLRNTLESLDEYAPDYAGLLLRLLQQMQKITIAQLGAER 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ A + +P +QL+YQ + LPY PD RM +EM+LLR +A P Sbjct: 302 YAEEIPAALHALAA---RLPVELLQLWYQIGNEAWQNLPYQPDARMALEMSLLRMIALQP 358 Query: 362 RMPLPEPE-VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P +P A A ++ Q P +A A T P S+ + + Sbjct: 359 LLPTSDPAQARPVREAAPASDSLTASLQAQTTPATATPAATTEPQAVAPSETASHGEAPA 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 AT + AA + + +P E+ PAKK Sbjct: 419 APTTATVHAEPADNEPPPWEDTTPAAADDSNDAVPPWVSETIPDDSERTPAKKP------ 472 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + A A + P + W+ ++ L L + + Sbjct: 473 --ESAPAAAIAPETAAPAAAKKPAAPPANTTDPGDLIDNLERWSDFLASLDLHEYPLLLL 530 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 N+ + L L ++ + AQ + A ++ + TI A++TP+ Sbjct: 531 ENSVPASWQAPL-LSLYTAPTGIIFDQAQNREQAAAAIAHALGIACTIEIQPADALKTPI 589 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E+R+ +A + + I+ + F L ++I+P+ Sbjct: 590 EYRRQKNAAAQQRAEQDFLNHPQIRAAQATFGPALQVDNIQPL 632 >UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HBY1_ARTCA Length = 1202 Score = 344 bits (882), Expect = 6e-93, Method: Composition-based stats. Identities = 154/517 (29%), Positives = 235/517 (45%), Gaps = 7/517 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 6 ALYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 65 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ +G +D+IEIDAAS V+D RDL + YAP R R+K+ Sbjct: 66 AEGPTDTPCGVCPSCVELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRDRYKI 125 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + E Sbjct: 126 FIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEP 185 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A +G + + A+L Sbjct: 186 LMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPNGLDYELAVALL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +VEA+ ++ V ++ G + + ++L + +VQ P + Sbjct: 246 GYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQAMPES 305 Query: 302 LGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A R++ A + ++ E+ A R+ +E+ R L Sbjct: 306 AQVILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELLCARIL 365 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + Q S A + P + + A Q Sbjct: 366 LPSSEQNERGIAARIDRVERRLNYSGHDAGAPAGQGASGTLGAGSAPHTPAAAAIPVAAQ 425 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 G + A + A+ A A + APA + + Sbjct: 426 AAPAAGGQASEPHAPAAQSPSAQDAAGQAASVQAPAEQAPAGQAQVPQAASAPAPADGPQ 485 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 + + + A P A + E +P A Sbjct: 486 GQTPRAPLASAQPQAGPDAPSRPATGESSPRTAHGAP 522 >UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37DC8 Length = 539 Score = 344 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 140/429 (32%), Positives = 216/429 (50%), Gaps = 5/429 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRP TF DV+ Q+ L N + G+ HAYLF+G+RG GKT+ AR+LAK + Sbjct: 2 YKALYRKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC CD CR+ + G D++EIDAAS V++ RDL D Y P RG++K+ Sbjct: 62 NCRNMKDGNPCLECDICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLK +EEPP +VKF+LATT+ K+P TILSRC +F + + E Sbjct: 122 YIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRCQRFDFRRIKPED 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I +E + ++A+ A+G +RDA+SL D+ + G ++ VSA G Sbjct: 182 IAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRC-SVGGEEIDEDVVSAAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D L+EA+ + + +++ + L E++ L I ++++SP Sbjct: 241 IAGRDYLFGLLEAINTGDTAKALSITASLYDMSKDIGRLCEELISQLRNIMLIKVSPDTA 300 Query: 303 GN---DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +A ++RELA + I + L + A +RR+ EM L++ Sbjct: 301 ESLIVCVAEEMQKLRELADSTELDTIMSHISILQECSSNMNRAMNRRVEFEMALIKLCGN 360 Query: 360 HPRMPLP-EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + P QV QQ + ++ A Sbjct: 361 IRNTTEAIDNSEIYDKIKQLEDKIKNAPVQVQSGAPQQQQQPEVLTASSPPTEADPAPTV 420 Query: 419 LQRVQGATK 427 + + Sbjct: 421 DIKTLKPSD 429 >UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX9_THEYD Length = 512 Score = 343 bits (880), Expect = 9e-93, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 226/388 (58%), Gaps = 2/388 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LARK+RPQ F+D+ GQ+ V+ L N L G+I HAY+FSG +GVGKTS AR+LAK Sbjct: 1 MEYLGLARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C I++GR + +IEIDAAS T VE+ RDL +N++YA A G + Sbjct: 61 ALNCIDSQN-KPCDKCPSCVAIKEGRAMSVIEIDAASHTSVENIRDLRENIRYASAEGFY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS+ +FNA LKTLEEPP HV F+LATT+P+K+P+T+LSRC K + + Sbjct: 120 KVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRIPI 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ +L+ I N+E+I AL +A +EGS+RDAL++ DQ + + V+ V+ + Sbjct: 180 NLIKQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTEN-VTQDNVNLL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D + L E +++ N E+++ + E G +++ L+ +++ + + +++ + Sbjct: 239 IGGTDVNVLYELTECLIDGNREKIILKVEELNNFGTDFKRLVGDLINFIRNTLISKITKS 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +L + + + + L+ + + R+ E+TLL+ Sbjct: 299 FKLYISESEASLIEKLNKKTSEEHLVVLLKELINSEFAIRSSFFPRVIFEITLLKLSFLA 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQ 388 + + + +P+ P ++ Sbjct: 359 HFKNIDDIIEEAKKKSPLQPPSLPLNNN 386 >UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYL7_9GAMM Length = 697 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 200/520 (38%), Positives = 289/520 (55%), Gaps = 7/520 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQEHV AL N + R+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPKNFHELLGQEHVSKALINAIHNQRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+ PCGVC C+ I+ GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GR+KV Sbjct: 62 NCETGVTSEPCGVCGVCQSIDSGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPLPQVA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ILN+E I++E AL L+ +A+GS+RDALSLTDQAIA G+G V+ + + MLG Sbjct: 182 LAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSLTDQAIAFGNGNVTDEVIRQMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D ++++ + + N +++ I + ++ +A+ + LH++A++Q P Sbjct: 242 LIDQADVIAILANIYQQNTQQLTQSIQLLREQVVDAKAVFDRLAETLHQLAILQALPNFD 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 ++++LA+ +P +QLYY ++ R+ L A +EM LLR +AF Sbjct: 302 LQINRQQSEQLQQLAQKLPAELLQLYYDIVVKSRENLALANTPMQALEMCLLRLMAF--- 358 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 +P Q + Q T ++ + ++ Sbjct: 359 ----KPLHRNQISLRPPIANNPESQSLDSQSPDFKIVDTTPSEAIQGAKSSVLAEDSLQL 414 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 ++ ++ + + + + + A Sbjct: 415 TSEQSDNNLSDDNLLKSASNVDSIQQIIEESIQQGTEQQAFDDSHLIAIDEAAVNTPTQQ 474 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 + + VA + + + + + A A+ Sbjct: 475 TPTIEDDAVANRLSDLQPSDSHHETSVHGIVTAPAMVTQD 514 >UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1Z8_ERYRH Length = 600 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 134/465 (28%), Positives = 226/465 (48%), Gaps = 2/465 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RP +VVGQEHV+ L N ++ +I HAYLF G RG GKTSIA+L A+ Sbjct: 1 MSYQSLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE CG CDNC + G DLIEIDAAS V++ R L++ V+Y P G++ Sbjct: 61 AVNCEN-PDQVICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGE 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+++LN E++ E +L+A + G LR+AL++ +QAI D Q++ + Sbjct: 180 VDIAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D ++L +++ E E ++ I + + + L+++++ L + + + Sbjct: 240 NGIITDQDKINLFDSIREQQMEALVNQIAMMNEKSVNIDRLMMDLVSGLKDSIIYSHTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA T+ + + LL ++ ++ ++ E+ ++ Sbjct: 300 DAL-VNENSLMFIHYLAETLQVHERLKVIEKLLSYTDKMKFSQNQSTYFEVAMVDVFNSF 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + S + P P S + + Sbjct: 359 SNKNVNLNQQTELTMTAEQIYRAENNIKPQKPKTSTQIEVIKKPAPVEESVPFEEDKDID 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA 465 V+ + + + + + ++ + Sbjct: 419 SVEEEIVIETQVLSEVSTEQTESFLTVDDVVRYMVTADKAIRIQD 463 >UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 Tax=Lactobacillales RepID=A5VIC2_LACRD Length = 611 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 141/532 (26%), Positives = 235/532 (44%), Gaps = 3/532 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQ+ V L N + +I HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RD+ D +YAP + + Sbjct: 61 AVNCHHSKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P+TI+SR +F + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E +++++IL+++ + ++ +AL ++A AAEG +RDALS+ DQ ++ D +V + Sbjct: 181 EDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + G + + + G + + + +++ + I + Q SP+ Sbjct: 241 TGSVTKQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPS 300 Query: 301 AL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + E+ + + L ++E+ + + +E+ ++ Sbjct: 301 LISVESTGLKQEDFEEIVQLASSATLYRMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQI 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ L A + Q Q Q +Q P+ + +Q Sbjct: 361 EPQKNLQSAPAVSADTNAEATKTIEKLQQEIQQLQQTVKQLQNTPVRASRPSPRQQNEQP 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + Q + ++ + R +L A Sbjct: 421 RVQQKKVQVNLNKIYPVLENATRQDLINVRELWGDMLNLLSVPQRSLLHVSQPVAASAAG 480 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE--RDPWAAQVSQ 529 E + + + +D W Sbjct: 481 IIVAFDYPFLFQQAADDTTLLENMESALQRLTGNERQVVFVPKDKWPKIRQD 532 >UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y576_9FIRM Length = 613 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 141/446 (31%), Positives = 229/446 (51%), Gaps = 4/446 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RP +F +VVGQ+H++T L N + +I HAYLF G RG GKT+IA+LLAK Sbjct: 1 MSYKALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE A PC C +C I+QG D++EIDAAS V++ R+L++ V+YAP GR+ Sbjct: 61 AVNCEDQQNA-PCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+PQK+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ +L +EHI E AL+L+A+ A+G +RDALS+ DQ IA ++ V+ + Sbjct: 180 NEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQNHITAAHVNEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + +++ + + + ++ I +G++ + L +++ +L + + Sbjct: 240 YGITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIEILKECVIFIYTQD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + D+ L+ ++ A E+ +L+ +A Sbjct: 300 VTLLNKINETEANAIINGK-SSRDLLALIDILMETLEKYRTASSAASYFEVAVLKMMAEL 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + +P P ++ Q Q+ + +PE L Sbjct: 359 DQSRRTAAVIPPVYSQPATAPSIPASPQASTGKPRPEVQSESTLMPE--EADLTEDTLPL 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAA 446 + A E + + V Sbjct: 417 EMMPPLPAPPEETGRVIQEKTVEVHP 442 >UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMB1_9ACTN Length = 723 Score = 343 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 150/613 (24%), Positives = 232/613 (37%), Gaps = 53/613 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + G++ HAYLF G RG GKT++ARLLAK L Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAYLFCGPRGTGKTTMARLLAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C+ C+ I G D++EIDAAS T V++ R+ ++ YAP RG+ KV Sbjct: 62 CRKAPGQLPDGTCEECQLIAAGNHPDVVEIDAASNTGVDNVREEIISRANYAPVRGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ T+LSR +F A+ E+ Sbjct: 122 YIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSRVQRFDFHAIGNEE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + E ++ RAL+L+ R A G +RDAL+ +Q GDG VS LG Sbjct: 182 MLSHLQQVCEAESFQYDARALELIVRHARGGMRDALTSLEQLSVFGDGVVSLAIAQDFLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 + A+ + + + +N G + E+ + ++ Sbjct: 242 EASGSLLAHVSTAIAKRDVSTLFEQVNTLVDEGRDVLQFTRELAAHIRNAYVMAAVGPDT 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ + R + L ++ A ++R+ +E+ R Sbjct: 302 SALTITDDERTQLAQEVREYRSADRLARALTILGDASNQMRTASNQRLVLEIAFTRLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L V T P V T ++A+ Sbjct: 362 TSDLTLESLAERIADLEYQLADGVSRSTSDVDTSSVTEVTKPPVETAPTPVVEVSAQMTS 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 V A+P + Q Sbjct: 422 APVVEVPVQPMPTLVVEMPAQPAPLTPPVSEPTPEVPSQ--------------------- 460 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE-Q 538 A EA W V Q Sbjct: 461 -------------------AETSSHDASARTPGNADEATLTRRWKQIVKQYREKAPAHGS 501 Query: 539 VALNAWKEESDNAVCLHLRS-----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + +N+ D + L L + L +++L + + G T+ ++ Sbjct: 502 LLMNSTLASDDGSNLLVLLPKGSEFASAMLGREEIKKELLTFIEPVLGMR---TVTYGES 558 Query: 594 PAVRTPLEWRQAI 606 + + Sbjct: 559 SLQNKAIADAERA 571 >UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsiella grylli RepID=A8PNF7_9COXI Length = 523 Score = 343 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 212/532 (39%), Positives = 304/532 (57%), Gaps = 18/532 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ+F +++GQE L N L RIHHAYLF+GTRGVGKT++ARLLAK Sbjct: 1 MSYQVLARKYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+T IT PC C +C+ I RF DLIE+DAASRTKVEDTRDLL +V Y P++GR+ Sbjct: 61 CLNCQTQITPEPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HV FLLATTD Q+LP TILSRCLQFHLK + Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCLQFHLKTITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +IL +E I EP AL LA+AA+GSLRDALSL DQAIA + ++ Q ++ + Sbjct: 181 VQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQAIAYTNQNLTKQDINTL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L++A++ + ++ +L+ + + G+++ ++ E+L LH++A+ Q Sbjct: 241 LGHVAHSEIIQLLDALILEDTAKLWSLVEQFSELGVDFSCVMDELLTCLHQMALSQRFKT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + A+T+ P IQLYYQ +L R+++ AP R+G EM LLR LAF Sbjct: 301 EV-----NYTQTIIDFAQTLSPEAIQLYYQIVLFSRRDITLAPTPRLGFEMMLLRLLAFK 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E P + P+ Q + + L + Sbjct: 356 PAGDDSEIN----------PIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIA 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ A ++ N+ +L + R + A A E ++ Sbjct: 406 QLKLTGLTHALAQQCALQSYHNNHVSLCLDPR---QAALRSAKQETKLAHALSEYFKKPI 462 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 T + ++TP L++ + ++ + L + + ++L Sbjct: 463 TLSIGVGDTSLSTPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQP 514 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 2/164 (1%) Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + + + T + + + W ++QL L L Sbjct: 356 PAGDDSEINPIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIAQLKLTGLTHA 415 Query: 539 VALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 +A +N V L L Q L + + KLA ALS + L+I D ++ Sbjct: 416 LAQQCALQSYHNNHVSLCLDPRQAALRSAKQETKLAHALSEYFKKPITLSIGVGD-TSLS 474 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 TP Q ++L QA E++ D +Q + + FDA+L +SI+ Sbjct: 475 TPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQPQSIQ 518 >UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 Tax=Acidithiobacillus RepID=B5EJD9_ACIF5 Length = 572 Score = 343 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 226/468 (48%), Positives = 289/468 (61%), Gaps = 5/468 (1%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y LAR+WRPQ F D VGQE V++AL + L GRIHHA+LF+GTRGVGKT++ARLLA Sbjct: 1 MSAYLALARRWRPQHFDDFVGQEAVVSALRHALDSGRIHHAFLFTGTRGVGKTTLARLLA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCE G+++ PCG C CR I G FVDL+E+DAASRT+V++TRDLLDNVQYAP GR Sbjct: 61 KCLNCERGVSSNPCGECSACRSIAAGNFVDLLEVDAASRTRVDETRDLLDNVQYAPTAGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+T+LSRCLQF+L+ LD Sbjct: 121 YKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRCLQFNLRRLD 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V QI+ +L I++ E + E ALQ+L+RAA+GSLRDALSL DQAI G G V V A Sbjct: 181 VPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLLDQAIVHGGGAVRRDGVLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG DD L L+ A+V+ + +V A++ + ARG++ LL ++ LHRIA+ Q P Sbjct: 241 MLGRSGDDAVLGLIAALVDRDAAQVFAIVGDHLARGMDGPGLLDLVIEGLHRIALAQFLP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A +D A + +R I P +Q +Y LL R++ PD RM +EM LR L+F Sbjct: 301 ADPDDDGAEAVVHLR---GRISPLTLQSWYFLLLSARRDFALYPDDRMALEMAFLRVLSF 357 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS-APQQAPTVPLPETTSQVLAARQQ 418 P P + PT+ P++ +P +VPL S+ Sbjct: 358 SGSASPDSPPAALPGGENRHPGESLPPTREFVMPEATSPLSDHSVPLLSIRSRDEVREPS 417 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 G A AA R + + A+ + + R Sbjct: 418 PVATSGQRDADAGTAPAADWRRVLASLAVSPMIAEYLRYGQALRCDPE 465 >UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 Tax=Synechococcus RepID=Q2JLX3_SYNJB Length = 779 Score = 343 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 163/523 (31%), Positives = 254/523 (48%), Gaps = 6/523 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RPQ FADVVGQ V+ LAN + LGR+ AYLF G RG GKTS AR+LAK Sbjct: 6 NYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKS 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G T PC C CR I G +D++EIDAAS T V++ R+L++ Q+AP R+K Sbjct: 66 LNCEQGPTPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVNSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + ++ Sbjct: 126 VYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L I +E I P ALQL+A+ ++G LRDA L DQ + +G ++ +AV ++ Sbjct: 186 DMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQL-SLLEGSITPEAVWDLV 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + + Q L+L++A++ + + V++ + RG E ALL ++ L + +V+ +P Sbjct: 245 GGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQ 304 Query: 302 LGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +++ A + L ++ + ++ +E+ L+ L Sbjct: 305 RELVAVTDSTWAALQQRAPRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALVDLLGQ 364 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + E R +P + Q P +AP P + S V + Sbjct: 365 LRPSMVAEDSAER---SPFPALDLSPAPQRTPPDGTAPPAPAATISPSSPSTVGEIDELT 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + S+ A + E RP K + Sbjct: 422 VGPSASPAVASSQKADRATRTESSEQPREPARDAATVKLLRPHWDEFLKRLSPLTKALMG 481 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 + + E + K +E ++ E + + + P Sbjct: 482 SGHLHQETPEAITLAFPSKGLVEKVRSKEAELRSVLHNLLQRP 524 >UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Tax=Gloeobacter violaceus RepID=Q7NK69_GLOVI Length = 632 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 165/522 (31%), Positives = 248/522 (47%), Gaps = 3/522 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F DVVGQ ++T L N L GRI HAYLF+G+RG GKT+ ARL+AK Sbjct: 1 MAYEPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+ C I G +D+IEIDAAS T V++ R+L++ Q+AP + R Sbjct: 61 ALNCIHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQ 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHMLS +FN LLKTLEEPP HV F+LATTDPQK+ T++SRC +F + + + Sbjct: 121 KVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I +E I E A++L+A+ A+G LRDA SL DQ A +G + + + + Sbjct: 181 TDMVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQL-ALLEGTIGAERIWQL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + L + E + + R++ + G E +L ++LG + + +P Sbjct: 240 VGAVPERELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPD 299 Query: 301 ALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA +M E A+T+ + + L ++ + R+ +E+ LL LA Sbjct: 300 RRDLVAVTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGLLGLLA 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + A P P + P P P + Q Sbjct: 360 SPSQNQPVALAPAAARPAAPVPVPPPRPAEERPTPPPPAAPRGVEERPNSVPQPPVEPTP 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 QR Q + + A ARP + R +P + + Sbjct: 420 PQRPQVPPPSIEPAAAIHRPARPSGSTPDGTGLRERWPEWIRLIPQPTQSLMSSSFWLEE 479 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 V+ +A + + L L + Sbjct: 480 TPKRLVIGFTTEPLVKRASEPRRLKQIQEVLQQFLGRPIEVQ 521 >UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau subunits n=2 Tax=Alteromonadales RepID=Q3IKN4_PSEHT Length = 842 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 245/529 (46%), Positives = 324/529 (61%), Gaps = 10/529 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++VGQ HV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+A PCG C +C++IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCDEGISANPCGQCSSCKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ QLEH+L E + + AL+++A+AA+GS+RDALSLTDQAIA +G ++ QAV M Sbjct: 181 SEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + SL+ A++ +G +M + A+R + ALL +++ L H + QL P Sbjct: 241 LGLMDTHYSQSLLAALLAQDGAALMKEVANVASRNPNYVALLDDLIALTHLTQLSQLVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + +A+ P IQ+YYQ LL G+K+L +AP+ R+G EM +LR LAF Sbjct: 301 AAALDETN-ADYITHVAQNTNPQQIQIYYQLLLNGKKDLQWAPEPRLGFEMIMLRLLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + QS PVA + + PLP T + Q+ Sbjct: 360 P--------IDTQSQQPVAVNTQPVQSNTTKASALRDILNKSKPLPSTAQNNDTTQPQII 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A AK SEP NN++ + T + EA + Sbjct: 412 EPKPADVAKLSEPQNVAPDPLNNNSSTTQHV-STTVPAVEQAVEPTIVSAVPNEAASEQL 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 T Q V +A +++ + + + + A D ++ V Q Sbjct: 471 VTQQHQHTNDVTDEQAQRQSEDEAYLQQSNLEHSLAAQFDDVISSAVDQ 519 Score = 107 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 100/274 (36%), Gaps = 1/274 (0%) Query: 370 VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAK 429 Q +A P++ ++ +Q T Q Sbjct: 570 ETEQQNTANLSSANTRPSRFTANSSNSNEQNVTTNSDAINHSRANNNAQQTHADNPPPWP 629 Query: 430 KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKE 489 + + + A + A+ + +++P KA + + Sbjct: 630 NDFAGESEKKPQLPLAGSQNKAASQAQFESKPERKIDFKAKHQTITENLAPELLEQINPQ 689 Query: 490 VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESD 549 V + ++ + A ++D WA + ++ L + Q AL++ + Sbjct: 690 KVPEVVVAQPSIPAPDDFQSPISEIRFAHQQDEWAYLIKRMGLGGRMRQFALHSIFTKQG 749 Query: 550 NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEE 609 N + + + SQ+HL+ +Q+L ALS + V L+I + +P +Q I Sbjct: 750 NNLHIDVDESQKHLDTPMLRQRLDAALSSIYEHNVTLSINF-AKGVIDSPYLIQQKIDAG 808 Query: 610 KLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + QA + I +D+NI ++ F AE+DE SI+ + Sbjct: 809 RHQQAIDVITSDDNIVQFQQLFSAEIDENSIQAL 842 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 342 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 136/430 (31%), Positives = 208/430 (48%), Gaps = 3/430 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP+TF DVVGQEH+ L N ++ G+ HAYLF+G+RG GKT+ ++++AK + Sbjct: 2 YQALYRKWRPKTFDDVVGQEHITATLKNEVAAGKFSHAYLFTGSRGTGKTTCSKIVAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C CR I+ G +D++EIDAAS V++ R L + + P+ +++V Sbjct: 62 NCERPVDGNPCNECAACRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPSVVKYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HMLS+ + NALLK LEEPPEHV F+LATT+ K+ TILSRC +F + Sbjct: 122 YILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRCQRFDFHRIRSRV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I +E + A L+AR ++G +RDALSL D + G ++ QAV+ G Sbjct: 182 IADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASFGTD-ITVQAVTQAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +A + + + ++ + + ++ L +M+G + +V+ A Sbjct: 241 LAGQSHLFEIADAAIARDPAAALLVVGRLSEQSCDFSRLCEQMIGHYRNLMIVKTVREAD 300 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+R A I I L L +R +EM ++R Sbjct: 301 DLVQGTPEDLERLRTQAGGISLGAIMYALGVLQDAATSLTRTAFKRTELEMAIVRLCDER 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + A PP A A P AA + + Sbjct: 361 MGGGLEGVLDRLEKLEKAARLGAAQAPAAPPAQPEASGAATAPPKDSAKPVSAAAASKPK 420 Query: 421 RVQGATKAKK 430 G + Sbjct: 421 PAAGVAQVTP 430 >UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BCW3_STRRD Length = 727 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 166/602 (27%), Positives = 240/602 (39%), Gaps = 56/602 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEKGPTPDPCGECESCVALAPTGPGHLDVIEIDAASHGGVDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E IL E + EP AL L+ RA GS RD+LS+ DQ A D ++ Sbjct: 180 PPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSILDQLFAGSDEAGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D D ++ A +G +V +N G + +++L + ++ Sbjct: 240 VSLLGYTDGDLLDDVIAAFAARDGAQVFQAVNRVIEGGHDPRRFAMDLLERFRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A R++ A ++ P ++ + G E+ A R+ +E+ Sbjct: 300 VPEAAGSGLLDRPADELERLQAQAVSMGPAELTRAAEIFNAGLTEMRGAASPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + TAV P A Sbjct: 360 ARTLLPGAAQGEAALLSRLERLEKGGVTAVPAAYAAPAPVIHAAPAPGAPAPVVQAVAPQ 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A A A + Sbjct: 420 APPPVPPAAGTAPAAPAEQ----------------------------------------- 438 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 R + A + A + W + L Sbjct: 439 --SRPQGDGDWPVAARPGAPAPEPQAQQAPAAPAAAPVSGAGGGAVQQAWPQVLGVLKQR 496 Query: 534 KLVEQVALN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 +V +N V L + R+ G +A AL + G ++ Sbjct: 497 SIVVWANVNTNAQVIGVEGKVVTLGFTQVGAMRNFTGGGKDAVVAAALQDVLGGNWKVEA 556 Query: 589 VE 590 V Sbjct: 557 VV 558 >UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mobiluncus RepID=D0YP73_9ACTO Length = 719 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 175/618 (28%), Positives = 263/618 (42%), Gaps = 35/618 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFA+V+GQ+HV AL L+ GRI+HAYLFSG RG GKT+ AR++A+ LNC Sbjct: 4 ALYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R RFK+ Sbjct: 64 AEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPVRDRFKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+KF+ ATTDP K+ TI SR + + + E Sbjct: 124 FILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRTHHYPFRLVAPEI 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAML 241 +R L + + E + E L L RA GS+RD+LS+ DQ +A V A+L Sbjct: 184 LRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAEPVLHYDRAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D LV+A+V+ G +++ G + + ++L L + +++L+ A Sbjct: 244 GYTDSGLLQGLVDALVDGCGADAYGVVDRMIQTGHDPRRFVEDLLQYLRNLVILRLAGAG 303 Query: 302 LGNDMAAIEL----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + I MR PP + + G E+ A R L L Sbjct: 304 AEAVLGDIPAVQLSAMRAQVAARPPRTWTRAAEQVNAGLSEMGGASSPR------LSLEL 357 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + E + + A ++ S A + A Sbjct: 358 LVAQLLLEFGVEAGEPAASLGVSGAAVSAPAPAVPVSSVSTPAVPAAASSAGFPAVPAPA 417 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 V + A S A V+ E A Q PV Sbjct: 418 APTAVSQQSAAPVSSAAPIPVPAAVSPRVHEVPAPSPQESQPEPVW-------------- 463 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 TP E V+ LK A ++ A+ EAI R W + L Sbjct: 464 EFKPTPWGISGEAVSGKTTLKPAKAALESAMPASSDNYEAI-RSRWGEIMDVLKAHHSAT 522 Query: 538 QVALN---AWKEESDNAVCLHLRSS-QRHLNNRGAQQKLAEALSMLKGSTVELTIVE--- 590 + L+ + N V + ++ LA ++ + G V +T V Sbjct: 523 ESLLSTHGQLQGMRGNTVEIAFQNQGMLRAFGERHVSALAGVITQVTGQNVVVTGVVAGF 582 Query: 591 DDNPAVRTPLEWRQAIYE 608 + T + + Sbjct: 583 GAPSSPSTAPQSVSRLPA 600 >UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, putative n=2 Tax=Treponema RepID=Q73K31_TREDE Length = 612 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 168/638 (26%), Positives = 278/638 (43%), Gaps = 55/638 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQV A + RPQ F D++GQE V L + G+I HAYLFSG RG GKTS AR+LAK Sbjct: 1 MEYQVTATRRRPQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TPCG C +C EI G +D+IEID AS T V D R + D + + P R+ Sbjct: 61 VLNCAEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ K+P TI SRC QF+ K + + Sbjct: 121 KIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFNFKLVSI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E ++ L E I+ + AL +AR A GS+RDA +L DQ A DG ++ + + Sbjct: 181 EILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSDGHITFEKIHEK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LV A V NG+ +++++ GI E ++ + + +V+ Sbjct: 241 LGLTGVDSINKLVSACVAKNGQEALSILDGILQGGISVEQVVSDCADYFRSLLLVKHGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +++ + I+ +L K+L ++ D+R +E+ + R Sbjct: 301 KEALIGQRADRFPQDILQGWEAVQIERALSIMLQLFKDLRFSIDQRYELELAVSRLSWLG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + + + P P + P P + L + + Sbjct: 361 DYVSPADLKTAFDAAKSLISSRRTDVETGRPLPHREESRPKESPRPFDNAGSLTEQFKAV 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + +E + NN + ++ ++ + A Sbjct: 421 LRRDNKLDVFTEKKNEEKQPVSNNVPSDNVS--------FEKKDEAQETVLQTVRSVENA 472 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V + KE E E + L++ + W Sbjct: 473 FNNVEELKEP-----------LIEALLEKSGILSSAVGQSKDWI---------------- 505 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 ++++ L RSS + + + + +++S + G ++L + Sbjct: 506 ------LKEDSLTLFARSSFDYTLIQKQKDTVIDSISEITGKKIKLIL------------ 547 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 ++ I + + E++ I+T+ F ++ E Sbjct: 548 --KEYIPPQPENKVEETVKEPEKIRTITDVFMGKIVEC 583 >UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 Tax=Cyanobacteria RepID=B1XPA0_SYNP2 Length = 742 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 166/632 (26%), Positives = 261/632 (41%), Gaps = 44/632 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFA +VGQE + T L+N L RI AYLFSG RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L I + E+I ++ L+A+ A G LRDA ++ G+++ V Sbjct: 181 PLDAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDA-ESLLDQLSLLSGEITPDKVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++ + + E V+ RG E +L + + + + + Sbjct: 240 DLVGAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTA 299 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L + + A + I Q L +L R+ +E+TLL Sbjct: 300 PQRGDLIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + T T P P P T+ + Sbjct: 360 LPAAFGQTQTTRTATTPLNTQINLQTQPTATPPTSPPPPQDIPHPFGETPPATNGHGSGT 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A A+ + Sbjct: 420 PPSPVDTQVHQVPPKPEVPQVPAPVPEAKAIAKAP------------------------- 454 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 Q + T + + P + + + W V QL L Sbjct: 455 --------PSQDVIPPTVQPTEPPPLSPSPPATTSPTISALEREELWQGIVRQLPLLSQS 506 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE------ 590 + +D++ + ++S+ + +L A + G+ +++T+ Sbjct: 507 LFRDHGKLLQLTDHSALIGIKSANLLKIAKNKTLQLEAAFEKICGNPLKVTLQVGHGLEN 566 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 TP+ A ++ A+ I Sbjct: 567 GQGGTSVTPILSTPAPAPTVISPAQNPIEMPP 598 >UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4E9Y5_9ACTN Length = 825 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 168/639 (26%), Positives = 270/639 (42%), Gaps = 39/639 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP TF VVGQ+H+++ L + ++ GR+ HAYLF G RG GKT++AR+LAK L Sbjct: 2 ESLYRKYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALL 61 Query: 64 CETGITAT--------PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYA 114 C A P G C+ C I +G D+ E+DAASRT V++ R+ ++++V +A Sbjct: 62 CRNAEAARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGVDNVREEIINSVNFA 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P RG++K+Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ TILSRC +F Sbjct: 122 PVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRCQRFD 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + E I H+L ++ +E ++ AL ++AR A+G +RDALS +Q G+G V Sbjct: 182 FHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQLSVFGNGSVHA 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 ++LG + D A+ + + + LI G + L +++ + + + Sbjct: 242 DDARSLLGEVSDQILGEFSRAIADRDVAELYGLIRAQVEEGNDLLELTRDLVAHVRDVYV 301 Query: 295 VQLSPAALGN-----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ A + A P + L E+ A D R+ + Sbjct: 302 ACVAGARAELFEGGSEQAEALAAEAAAFGEHPADRLARVLTVLDDAALEMRGASDVRLVL 361 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E+ R + + + + + Q + Sbjct: 362 EIACTRLARPEADLTIEALAERVARLEAMIANGAVPASVAAAQAAAP-----------AA 410 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 S AA+Q A + A A + +R A+V A + Sbjct: 411 SVPAAAQQPTLISGARAAAPAASAAPAATSARQGGMPWDRGAAVPAAQPAPKSAAPAPAP 470 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 A + A V+ K A + + WA V + Sbjct: 471 RPVTPAPQPVAAPASAPAASTVSVSKPNNAAQVAAAGAAETPAVEDAGELQRKWAEVVER 530 Query: 530 LSLPKLVEQ-VALNAWKEESDNA-VCLHLRS----SQRHLNNRGAQQKLAEALSMLKGST 583 + + + LNA D + + + + + + L Q + + + G Sbjct: 531 VKARQASYAGLLLNARATADDGSKLTVSFPAGSTFAIKMLGRADTQSVVLPTVCAVFGRR 590 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 + V D TP +EE AR ++ AD Sbjct: 591 -TVDYVLD---GGGTPAPQ----HEEHSPSARAAVSADP 621 >UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Coxiella burnetii RepID=B6J935_COXB1 Length = 509 Score = 341 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 229/505 (45%), Positives = 312/505 (61%), Gaps = 4/505 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++QVLARKWRP+ F +V+GQ V+ AL+N L +HHAYLF+GTRGVGKT+I+R+LAK Sbjct: 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PC C+NCREI++GRF DL E+DAASRTKVEDTR+LLDN+ YAP +GRF Sbjct: 61 CLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKF+LATTD KLPVT+LSRCLQFHL L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +H+L EE++ E AL LLARAA GS+RDALSL DQ+IA G+G+V V M Sbjct: 181 LQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ ++EA+ G+R++ + +G+++ L ++L LLH+IA++Q P Sbjct: 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + + ++R+LA+ + D+QL+YQ LIG+++L Y+P + G EMTLLR LAF+ Sbjct: 301 ALIENDS---EQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFY 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P PE + A V PT + T P T+ L + S +L Sbjct: 358 PSAANAIPETESKE-AVVTPTPKSSETSWPQLLSQLKLTGATLALAQQCSLKELTDNRLY 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + R V + R +V + + A K + + +A Sbjct: 417 LMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDISNHQTETPAALAQKKAQDRQTEA 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEK 505 +M ++V + L E Sbjct: 477 EKRMMNDRQVQRIMQTFDATLVKES 501 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNA 551 E + A W +SQL L +A KE +DN Sbjct: 355 AFYPSAANAIPETESKEAVVTPTPKSSETSWPQLLSQLKLTGATLALAQQCSLKELTDNR 414 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L L Q+ L + ++++E LS T+ + I ++ TP Q +++ Sbjct: 415 LYLMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDISNH-QTETPAALAQKKAQDRQ 473 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A + ++ D +Q + + FDA L +ESI P Sbjct: 474 TEAEKRMMNDRQVQRIMQTFDATLVKESIVP 504 >UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q117S8_TRIEI Length = 695 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 234/474 (49%), Gaps = 6/474 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ+ + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T +PCG C+ C I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L HI EE I A+Q++A+ A+G LRDA SL DQ + G+++ + V Sbjct: 181 PLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQL-SLLAGEITVERVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + + LVEA+ N +V+ + RG E +L + G + + + + Sbjct: 240 DLVGAVPERDLMVLVEAIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + ++ + ++ I + L ++ R+ +E+TLL Sbjct: 300 PTSKNLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS-QVLAA 415 L + + + + P + + P + E Sbjct: 360 LPSALPKFNQLEKQETRDISQNVSVKNTSKNLSQPLTKKPISEKPKQQISEPKEVSKEVP 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + + +++ + + E V +A Sbjct: 420 IAPKSEDFFTSSTNDTAKKSSSDSLETDKIKNESELQNIWEKVLAEVKPHSTQA 473 >UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUE6_9DELT Length = 561 Score = 340 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 141/441 (31%), Positives = 222/441 (50%), Gaps = 3/441 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L ++RPQ FA V GQ+ + + L+ R HAYLFSGTRGVGKT++AR+L+K Sbjct: 1 MAKAGLTARYRPQNFAQVAGQDFIKSILSRAAGQDRPSHAYLFSGTRGVGKTTLARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G PC C +C +I +G D+ EIDAAS T V++ R L ++V Y+P GR+ Sbjct: 61 AINCYNGPAPEPCNQCSSCEQITRGASPDVWEIDAASHTGVDNVRKLREDVAYSPMSGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS +FNALLKTLEEPP H F++ATT P+K P T++SRC + K L Sbjct: 121 KVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRCQHYVFKRLTH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L+ E +++E A+ LL R GS+RD++S+ Q +A GD + T V + Sbjct: 181 GELFAHLCFVLDTEGVSYEKEAVHLLTRRGSGSVRDSMSMLGQVLALGDEGLKTADVRRV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + L L++ +++ + R+ ++N +G++ L EM + ++ Sbjct: 241 LGLADQELFLRLMQHILDQDLVRLHEMVNYLLEQGLDLGFFLQEMAQCWRNMFLLSQGGQ 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A + RE+A + I +Q +L RK + + + + +E+ L Sbjct: 301 EAGKVLDLPAEEVEKWREMAGMFAASTIHAGWQMVLESRKSILGSYEPGISLELMLYNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +P+ Q + +S + T P V Q Sbjct: 361 YLPELIPVSGYAPEPQPRGETRQNTAEKKYPAGGEKKSLNNEYKTSSSPGEPEVVTENFQ 420 Query: 418 QLQRVQGATKAKKSEPAAATR 438 + Q + E T Sbjct: 421 EFQDRGEDKAEVQEEKPPGTE 441 >UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYL6_9BACT Length = 598 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 170/630 (26%), Positives = 266/630 (42%), Gaps = 51/630 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q H++T L N ++ R+ AYLF G RG GKTS AR+ AK LNC T PCGVCD C+ Sbjct: 6 QAHIVTTLKNAIAQNRLAQAYLFVGPRGTGKTSTARIFAKALNCVHAPTTNPCGVCDMCK 65 Query: 81 EIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 EI G ++++E DAAS T+V+ R+++ DNV+YAP RG +K+Y++DEVHMLS SFNAL Sbjct: 66 EIAAGNSLNVLEFDAASNTQVDKIREIIIDNVKYAPTRGNYKLYIVDEVHMLSNSSFNAL 125 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEPP HVKF+ ATTD QK+P TI+SRC +F L+ + +I L I +E I Sbjct: 126 LKTLEEPPPHVKFVFATTDVQKVPTTIISRCQRFDLRRIPTPEIAQHLLFIAGKEAIELT 185 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P A + +AR AEG LRDA S+ DQ +A ++ Q V + G L E ++ Sbjct: 186 PTAAESIARGAEGGLRDAESMLDQLVAFCGDKIDEQNVLNIFGFTARQTVAELCEHLING 245 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL-GNDMAAIELRMRELAR 318 + + I + + G + L+ +++ L + + Q +P L + A + A Sbjct: 246 HTGAALGAIQKQSDAGKDLSRLMADLIEHLRNLLVAQSAPETLHEDLSAEAIAELTAQAG 305 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE-----PEVPRQ 373 I + + + +A +++M E+ +RA+ + L E + Sbjct: 306 RIAADKLLNLIEQFADAESRMKWAANKKMHFEIAAIRAVQTLGQASLTEVLDTLTAIRGG 365 Query: 374 SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEP 433 P P + + P + + P P ++ +A V +A S P Sbjct: 366 GAMPERPVKKVEAPKTPVAAVAEKKTERPKPAPVSSPAPVAEPAAPVSVPAPAEAPASRP 425 Query: 434 AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 + + + ++ Sbjct: 426 SLSAFVAASIGGSEKKTP------------------------------------AAAPKP 449 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL--VEQVALNAWKEESDNA 551 + H+ + AA +A A ++ W V+++ + + V + S Sbjct: 450 DPKVSAEPAHKVEAKPAATVAPSANAQELWPQLVTRVRKDRPLISDWVESGQLTDVSSGV 509 Query: 552 VCLHLRSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 L S + L + L+ L G+ V L V R+ Sbjct: 510 ALLSFPPSADLARDTCERPNNRGFLEKLLTELTGAPVTLKTETRAGLVVEKLA--REEAK 567 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDE 637 E E+ D IQ F AE+ Sbjct: 568 PEPKVDPMEAFKNDPLIQKALAEFKAEILP 597 >UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Tax=Cyanobacteria RepID=Q8DJU0_THEEB Length = 603 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 155/529 (29%), Positives = 240/529 (45%), Gaps = 8/529 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F+D+VGQ + T L L RI AYLF G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T PCG C+ CR++ G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + ++ L++I ++E I EP AL L+A+ ++G LRDA SL DQ +++ + V Sbjct: 181 PLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLY-PERITVEQVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + G + + L+ A+ + V+ + RG + +L + L + + + Sbjct: 240 QLTGAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTV 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + LA +I + L ++ + R+ +E+++L Sbjct: 300 PQRRDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA---PQQAPTVPLPETTSQVL 413 + P P +P P T T +V + A PQ + Sbjct: 360 MTERVAQPPPPAVMPAARPQPTTMTPPRTEAEVAVAAKPAEPLPQDSALSVNHPHIQATA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 AA + + A + + L S ++ + Sbjct: 420 AAAPEPALFPEPVANPEQVWQQALQVLQQMQMSTYALLSQHAHLRHLGDREVRIGIVNQT 479 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 K ++ + K ALE P Sbjct: 480 LLNLTKNNHAKIEAAFSQVLGRPTKVALEVAPLPAKTTPTPKAKEPPQS 528 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 129/449 (28%), Positives = 227/449 (50%), Gaps = 2/449 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP+ F DVV QEH+ L N + ++ HAY+F+G RG GKT+ A+++A+ + Sbjct: 2 HIALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I + +D++EIDAAS T V D R + D V+Y P+ + +V Sbjct: 62 NCLNPKDGNPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKRRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATTD QK+P TILSRC +F K + V+ Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ ++ E I+ + +AL L+++ AEG+LRDAL++ ++ + + D +S + V+ +LG Sbjct: 182 IYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDEHISYKFVANLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + A+VE + + + ++N G++ L E + +L +++L + Sbjct: 242 VTSTEIVKEYLNAIVENDSNKGLRVVNRLWDEGMDVNTFLEESIKILRNALILRLGAQNV 301 Query: 303 GNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 DM + + L+ + I + L+ ++ + ++ +E+ ++ Sbjct: 302 LLDMMDEDKSFVTNLSNLLDSNRIVSVIKMLIDTANQIRWTRFPKVLLEINTIKLCDMQM 361 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + P+ + + + E + ++++ Sbjct: 362 DTSFEGLNERVKKLEIKLSQILENPSLLQSLKT-EKTLSLSTAAGEKSGSSEVNKEKMLL 420 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERL 450 A A L ++ Sbjct: 421 PDADVSEVLERWAEVKEAVKEEKPGLSQV 449 >UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE8_9BACT Length = 890 Score = 339 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 17/643 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRPQTF D+ GQ+H+ + L N + R+ HAY+F GTRG+GKT+ AR+ AK Sbjct: 1 MTYQVLARKWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCET PCG C NC EI QG +D+IEID AS V+D R + + QY PAR Sbjct: 61 ALNCETPRADLNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIRQIREGAQYTPARCP 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+++IDEVHMLS ++NALLKTLEEPP H+KFL ATT+ ++ TILSRC + LK + Sbjct: 121 YKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAV 237 I +L+HI E++A E A+ ++R A G +RD LS+ DQ I+ G +S Q V Sbjct: 181 RNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSILDQMISFCSGNEIISEQDV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G ++ + A+++ ++ I+ A E L E+ L + ++ Sbjct: 241 IDVFGMSSSNELKLIASAILQNQAPALIEAIDTLAKAARNMEQLYSELFQLFRDVMILLE 300 Query: 298 SPA---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 SP ++ + ++ ELA+ +Q L ++ + ++R +E+TLL Sbjct: 301 SPQQARSILDLEEVEIQQLYELAQLANNKLLQKLLNGFLDYDGKIRHTLNKRTYLEVTLL 360 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-PQPQSAPQQAPTVPLPETTSQVL 413 R + + + + Q+ + P Q + L T+ Sbjct: 361 RIMKDAHSLRVEDLLKHIQTLRKQGNLQDLEGDLPPLSITQKKNESLEARSLRPATNAEA 420 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + +A+ + + + D + + Sbjct: 421 LSIVKKPIIDTKVEAEVDTVNDTQNIGDSSASDTQNDYYEEDTAEETTPTVEATETEETI 480 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A +P + V +A E + + +++ + ++ + Sbjct: 481 SAIVEDKESPEDALQTEVEEVALQVEAAEPVDNFQASPSTDQTPAKQERHSNSIALEQML 540 Query: 534 KLVEQVALNAWKEESD----------NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 + + + + + L S G + K S ++ Sbjct: 541 AIPTSENEDTLTKAETIFVQKDDPELSKILLQPDSEDERNIETGVETKPDAEDSEVQAEP 600 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQT 626 V T V + + + + + QA E N+Q Sbjct: 601 VVETEVLPEQANEQANEQANEQANVQANVQANEQANEQANVQA 643 >UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 Tax=Exiguobacterium RepID=B1YGC8_EXIS2 Length = 561 Score = 339 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 159/556 (28%), Positives = 264/556 (47%), Gaps = 10/556 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ F +VVGQ H+ + N L R+ HAYLFSG RG GKTS+A+++AK Sbjct: 1 MAYQALYRVYRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C CR I +G D+ EIDAAS V++ R++ D V+Y P+ + Sbjct: 61 AINCEQAPVNEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYPPSEAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TI+SRC +F +K +V Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ ++++IL+++ I + AL+L+ARAA+G +RDALSL DQA+A +G ++ AV + Sbjct: 181 DQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFSNGDLTDDAVLEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++D+ L++ A+ ++++ + + G + + + +++ +++ SP Sbjct: 241 TGAVEDEALLAVANALQAHQVDQLLQTLEKMQRAGKDLKRFVEDLVFFYRDTLLLKTSPT 300 Query: 301 AL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ + A + TI + L ++++ R+ VE+ ++ Sbjct: 301 AVDLLERARPTEAFKTFVETIETEACFHIIEQLHDCQQQMRLTNHPRVLVEIAFIQIAEQ 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + ++ + T VP P Q P + +A + Sbjct: 361 GRTTGQIMQSLQQEVRELKEQMHQLKVTGVPAAE-GTPAQQPAKRKQARPTVRIAKERIR 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + A KA+ E A + + S W Sbjct: 420 QMLSRAEKAQLLEIQERWDAILKLILKQDGPIYSLVHESKPVLCSEDTLLIEFDNGKGWH 479 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + ++ +AL + ++ AI + W ++ + + Sbjct: 480 FEQVMTNERTRFVIEEALFEVCGVKRQ--------ILAILDNDWKELKAEFVAKRNSSNI 531 Query: 540 ALNAWKEESDNAVCLH 555 ES+ L Sbjct: 532 EEKEVAVESEEDRLLS 547 >UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAJ4_9FIRM Length = 593 Score = 339 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 135/431 (31%), Positives = 222/431 (51%), Gaps = 2/431 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L R +RP +F +V GQ+H++ L N + +I HAYLF G RG GKTSIA++ AK Sbjct: 7 MGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFAK 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE+ PC CDNC ++ G D+IEIDAAS VE+ R+L++ V+YAP +G++ Sbjct: 67 VINCESKEH-KPCLQCDNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYAPLKGKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKT+EEPPEHV F+LATT+P K+ TI+SRC +F + Sbjct: 126 KVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPK 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ IL +EHI + ++L+A+ A+G LRDALS+ DQ IA + Q ++ + Sbjct: 186 NEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYATNHIELQHINEI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L + +M +++ +G++ L V+++ LL + + + Sbjct: 246 YGITTVQEKMKLFHHIFNNEPVDLMDMLDGMLEKGLDIPRLTVDLIELLKESIIFEYTKD 305 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E + + L+ ++ +A + E+ LL + + Sbjct: 306 SSLLHSLSNEQAVEFITSK-SLKARFEMIHLLMDTYEKYRFASNVGSYFEVCLLEMINCN 364 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + ++ + T + T +T ++ + Sbjct: 365 GISELQIEKTEPKAVDAKKNVSRETLSNQNETINDERDTIETEFECDTAEEIFEQASEEI 424 Query: 421 RVQGATKAKKS 431 V K + Sbjct: 425 TVNEDKKGQAP 435 >UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacteria RepID=DPO3X_BUCAP Length = 363 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 180/356 (50%), Positives = 255/356 (71%), Gaps = 1/356 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ+LARKWRPQ+F ++GQ++++ A++NG SLG+IHHA+L SGTRGVGKT+IARL+AK Sbjct: 1 MNYQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC C C+EIE+G +D IEIDAASRTKVE+ R++LDN+ Y P++ RF Sbjct: 61 SLNCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP+H+KF+LATTD +K+P TI SRCL F L L Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I + L+HIL + + AL++++ A GS+RDAL+L + A+ ++ + + M Sbjct: 181 EDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + A L + ++E + +++M L+N+ + G+EW+ +L+EM+ LH IAM++ P Sbjct: 241 LGIPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLEWQNILIEMMRFLHHIAMLKSYPK 300 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++++A +IQL Y+ LL GRKEL ++P+ +MGVEM LL+ Sbjct: 301 IWNQIFIKNNENEIKKIAENNSKYNIQLCYKILLKGRKELFFSPNHKMGVEMILLQ 356 >UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWA6_9DELT Length = 670 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 183/656 (27%), Positives = 272/656 (41%), Gaps = 38/656 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA K+RPQTFA V GQ+ V L+ + R+ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLAAKYRPQTFAQVAGQDMVKAVLSRAAAEDRVAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC CD CR+I QG VD+ EID AS VED R L +N+ YAP GR+ Sbjct: 61 ALNCRHAPGPEPCNQCDQCRKITQGSHVDVTEIDGASNNSVEDARALRENIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HMLSR +FNALLKTLEEPP V F+ ATT+ K P+TI+SRC F + L Sbjct: 121 KVFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQHFVFRHLGE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +LN+E++ E A++L+AR A GS+RD++SL DQ +A G +++ + Sbjct: 181 DALVQHLSQVLNKENVPFEEGAVRLIARRAAGSVRDSMSLLDQTLALGGDNLTSAVTREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ + V L +G++ + E+ G L + +++ Sbjct: 241 LGLAGQELSADLFDALHARDCAAVSQLCAGLFRQGVDIGFFVRELAGHLRDLFLLRQGGD 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+ L + LA + +Q +L ++ + P+ +E+ LL Sbjct: 301 AVAPTLGLPGEEILFWQGLAPRFSAGHLHAAWQMVLDAQRGIVQNPEPAAALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-------TS 410 +PL + APV + P P A V P + Sbjct: 361 LLPQLLPLERMDSAPAPAAPVQGHPGHDRQEGSPLPPRDMGHAAPVQAPAARAREHGTPA 420 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + AA + +++ A + A R A VT+ + E Sbjct: 421 EKSAAAGSSEPAPEPAPSRRPGSCARPQREAPARQATSRPARVTETPAPKAAQPRAEAPA 480 Query: 471 AKKEAYRWKATTPVMQQKEVVA--------------------TPKALKKALEHEKTPELA 510 + ++ A P Sbjct: 481 HPEHVGPSESGMIEADDIPAAAPIIPVAPARPAAPAAPVAPAAPATPPVPPAAPAVETRP 540 Query: 511 AKLAAEAIERDPWAAQ----VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN-- 564 AA A R W A +L + Q+ L S CL L L Sbjct: 541 TAPAAAAGFRPDWQAFCDFCARRLENGEAAPQLHLLRQLRASWEPDCLRLTPRAETLLHQ 600 Query: 565 NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + +L +AL+ L + RT E + QA ++ Sbjct: 601 TEKQRPQLEQALAAW--GAGHLRLEFVAPRQARTEAELIEEFRNRPEMQACLRLLN 654 >UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C334AE Length = 726 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 213/376 (56%), Gaps = 5/376 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L +K+RPQTF +VGQ+ ++ L+N + RI HAYLF+G RG GKTS AR+ AK + Sbjct: 4 YEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSI 63 Query: 63 NC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + +PCG C+ C+ I +G +D+IEIDAAS T V++ R++++ ++AP + R+ Sbjct: 64 NCLASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFAPMQLRY 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HMLS +FNALLK LEEPP+HV F+LATTDPQ++ TI+SRC +F + + + Sbjct: 124 KIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAI 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L I EE+I E AL L+A+ + G LRDA SL DQ G+++++ V+ + Sbjct: 184 EEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFT-GKINSEKVNDL 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + LSL++A+ N + ++ + +G E +L + + + ++SP Sbjct: 243 VGLISERDLLSLLQAIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQ 302 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L I + A I Q L +L + +E+ LL L Sbjct: 303 CPELTMISKDIWKELCIEAEFWKTDRILKNQQKLRNSEIQLKSTTQPYLWIEIILLDLLQ 362 Query: 359 FHPRMPLPEPEVPRQS 374 + + + Sbjct: 363 EEKEFSIDSNNLDIAA 378 >UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 Tax=Aeromonas RepID=A4SMN2_AERS4 Length = 865 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 264/578 (45%), Positives = 336/578 (58%), Gaps = 7/578 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVLTAL N L GR+HHAYL SGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++ PCGVCD CREI+QG FVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP +VKFLLATTDPQKLP+TILSRCLQFHLK+LD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QLE +L++E EPRAL LA+AA+GS+RDALSLTDQA+A G+G V ++V AM Sbjct: 181 TQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRLESVLAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+EA++ + MA I E A G +++ L E+ GLLHR+AM QL PA Sbjct: 241 LGTLDHRHLHQLLEAILRQDAAATMAKITEIATLGPDFDQLHAELEGLLHRVAMAQLLPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A + +LA+ + P ++QL YQ +L GRK+LP+APD R +EMT Sbjct: 301 TVQEQGAD-AESLLQLAQAMSPEEVQLCYQIVLGGRKDLPWAPDGRTSLEMTC-----LR 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E + V P ++ V P + A + P T A Sbjct: 355 MLAFSPRREAVHPANLTVLPPSMAGGMGVAPAQLGKSRGADSAPTLATAIVAPPAAPGSV 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK-APAKKEAYRWK 479 V+ A A A + L++ Q + A + A+ Sbjct: 415 SVEHTATQMVPLVAHAVLETDEQEMASDALSAPLFVEQDELLREAQQMGYEAQPVMDAPS 474 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A + + A+ E+ E+ A++ AE++ A + L ++ Sbjct: 475 APISTVVAADEAMQHLPSDMAVAAEQPTEVPAEIVAESVVEPEAAPSAASSMQSLLGKRN 534 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 L + + + + + A++ Sbjct: 535 LLRSRLRSEPATAQAPRVAPIKPVAAPEGRPVAQPAVT 572 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 93/300 (31%), Gaps = 14/300 (4%) Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ------SAPQQAPTVPLPETTSQ 411 + + P P Q A T P + S Sbjct: 564 RPVAQPAVTPPSAPWQGAAVAPVHHSAPVTAYDELPPLDAYDEGGSDYEEYLNQGFGESA 623 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 A+ + + + + A A+ A + P A Sbjct: 624 ASASMANVAQTAASGASAVPAYGQAAPAQAPTRARPNPDDLPPWDLDGTPAARAQVAPAV 683 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAA--------KLAAEAIERDPW 523 A + +V + E E + + DPW Sbjct: 684 SSAAPVMPQAVATSEPAPMVDSVMETIDWDELESDNQPEEGEEVARLIPSSLLVNCDDPW 743 Query: 524 AAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 A +++ + + Q+A+N+ + V L L+ QRHL + A+ LAE + G Sbjct: 744 AELIARTGVGGRLRQLAINSVMTRQGDKVLLTLKPEQRHLVSDRARVDLAEIIGPELGQA 803 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 V++ + P TPLE +Y Q + D N+Q LR+ F A L +ESI P+ Sbjct: 804 VQVEVTLGTVPDQETPLEIEHRLYLGVREQVSRDLEQDPNVQFLRQRFGAVLHQESIEPL 863 >UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax=Bacteroidales RepID=B6YRS0_AZOPC Length = 471 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 128/411 (31%), Positives = 210/411 (51%), Gaps = 4/411 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V AR++RP TF VVGQ ++T L N + ++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSDYIVSARRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAYLFCGPRGVGKTTCARIFA 60 Query: 60 KGLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC C CD C+ + R ++ E+DAAS VE+ R L + ++ P G Sbjct: 61 KTINCTCLKEDGEACNECDFCQSFNENRSHNIYELDAASNNSVENIRFLTEQMRIPPQIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 HYKVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILSRCQIYDFSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I LE+I E+I+ E AL ++A+ A+G +RDALS+ D+ + ++ Q+V Sbjct: 181 TINDIVEYLEYIAQNENISTEREALNIIAQKADGGMRDALSIFDRVASFSANNITYQSVI 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD + LVEA++ + + ++N+ +G + + ++V + I + + Sbjct: 241 ENLNVLDYEYYFRLVEAILIGDVSCSLLILNKIIRKGFDLQQVIVGLSDFFRDIMVCKDP 300 Query: 299 PAALGNDMAA--IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ I + L++ + + Y+ ++R+ VE+ L+R Sbjct: 301 QTIVLFEIGDSAIREKYLNLSKQCTSDFLYNALELSNECDLNYRYSKNKRLLVELLLIRL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 ++ + ++ P+ + S + +P+ Sbjct: 361 CQLCCQLLTDGKDKKKRVIEPLIAKEKNVSVKQEQVFVSEKKSIIESEIPD 411 >UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GJF4_9CORY Length = 796 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 157/623 (25%), Positives = 264/623 (42%), Gaps = 19/623 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E L+ RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTLVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT---L 353 AL + + + E + + + G +++ R+ +E+ L Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L P + AP + Q +A QA P+ S Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPTAQPQAQQPVQPQQQSAPS 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A ++ Q Q + S+P + S P ++ Sbjct: 422 APVEEKQPRQYQEYGQPSQPEQRPAQPQAQQPVQPQQQSAPSAPAEEKQPRQYQEYGQPS 481 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS---QL 530 + + + P ++Q+ + ++ + PE + R W ++ + Sbjct: 482 QPEQEEHEVPELRQQWEAGRDEQPQQVESAPQEPETS--TVDVETVRAKWVDILNYISRE 539 Query: 531 SLPKLVEQVALNA-WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELT 587 + A + D + L + + LN+ + +A+ +++ + Sbjct: 540 KKNTTARILLRGATLLDVRDGTLYLGILTGAIANRLNDAKHNADIVDAVKAETNASLAVE 599 Query: 588 IVEDDNPAVRTPLEWRQAIYEEK 610 V + T A Sbjct: 600 CVLGNKIPASTKSTTAPAPASAP 622 >UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YCC7_DICT6 Length = 521 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 146/422 (34%), Positives = 222/422 (52%), Gaps = 8/422 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L RKWRPQTF +VVGQEH++ L N L I HAYLF+G RG GKT+IAR+LAK LN Sbjct: 3 IALYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T TPC C++C EI +GR +D+IEIDAAS +++ RD+ + + P R R+KVY Sbjct: 63 CVQGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKVY 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLK LEEPPEHV F++ATT+PQK+P+TILSRC +F + L +++ Sbjct: 123 IIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFDFRRLTRDEV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 QL I +E AL+L+A ++GS+RDA+SL +Q + D +++ + +LG Sbjct: 183 IKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQEITEELARNLLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AA 301 + + +A+ E N +L+ + G + E+L + +++ Sbjct: 243 PTYEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFRNLLLLKADERIGN 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 L + + + + +Q LLI L + + +EM LL P Sbjct: 303 LLSLTQEEFEELMQETKLYTIKRLQDIIDQLLILENRLRDLTNAPLVMEMILL------P 356 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 E + P+ +P + ++ P + Q L + Sbjct: 357 LFMKEETAETQPISQPLTQAVSSSPKGEEKTEEKDKKEEIVTGKPNIDEIIDKWPQLLAK 416 Query: 422 VQ 423 ++ Sbjct: 417 IK 418 >UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 Tax=Porphyromonas gingivalis RepID=B2RJ68_PORG3 Length = 602 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 148/642 (23%), Positives = 266/642 (41%), Gaps = 52/642 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V A K+RP +FA +VGQE + L + + + HAYLF G RGVGKTS AR+ A+ + Sbjct: 5 YIVSALKYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAI 64 Query: 63 NC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC E CG C++C+ ++ R +++ E+DAAS V+D R L++ P G++K Sbjct: 65 NCLERLPDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIEQANVPPQIGKYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP +V F+LATT+ K+ TILSRC F K + Sbjct: 125 IYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPA 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L ++ + E I E AL ++A A+G +RDALSL D+ +G ++ L Sbjct: 185 RIEQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANTIENL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 LD D L + ++ + V+ +++E A+G + + ++ + + M Q + Sbjct: 245 NILDYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGLASFFRDLMMAQDASTL 304 Query: 302 LGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + R ++A P + + + L ++ + +R+ +E++L+ A Sbjct: 305 PLLEQSEVVIQRYVDMAARCPTSFLYQSLKILNACDQQYRQSNGKRLLLELSLMNIAALF 364 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P A A + ++P P QP AP Q+ P P Q Sbjct: 365 SKGLTAPPPTHGAQHANPAVSGSVSPRPAPAKEQPSVAPSQSSVPPQPSIGEQRRQPETT 424 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + R R + + + +++ + Sbjct: 425 APTITEDKPEQTKVVPPTRPMATSTVGSEGRFTLRGIRNKQEQLQNNIQEVRTEM----- 479 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLVE 537 + E + W +LS ++ Sbjct: 480 --------------------------------TESFDEEQLQLAWIEFAETKLSEEIHLK 507 Query: 538 QVALNAWKEESDNA--VCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNP 594 + N + + + +S++ +L L+ +T+ + + ++ Sbjct: 508 ETMANCLPKLRPGTSAFEVEVLNSRQEEEINNVSARLLSFLADKLCNTTIRMNVRVSEST 567 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 ++ + + + LR L Sbjct: 568 SLN-------RVPVSLDEKIECLNQENPLFDELRMRLGLSLV 602 >UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWR2_METI4 Length = 618 Score = 338 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 154/638 (24%), Positives = 260/638 (40%), Gaps = 48/638 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV +RK+RP+ F++VVGQEHV+ L N + LGR+ HAYLFSG RG GKT++AR+LAK L Sbjct: 16 YQVFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSL 75 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G A C +I+ GR +D IEID AS V+ R+L + + P + R+K+ Sbjct: 76 NCADGPNADFDPDDPICLDIDAGRSLDCIEIDGASNNGVDQVRELREAAKSLPVQSRYKI 135 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML++ +FNALLK LEEPP HVKF+ ATT+P K+P T+ SRC +FH K + Sbjct: 136 YIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQRFHFKRIPRRL 195 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I +E I E +AL+++A +EG+LRDA DQ I+ ++ +V M G Sbjct: 196 IADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFYGEKIDQSSVQEMFG 255 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + + +G + ++ G + +LL LLH IA+ S +L Sbjct: 256 LVGIEPLCRLLTDLAQGDGRGALKEAHQLLESGKDPLSLLRSFRNLLHDIALYMASVESL 315 Query: 303 -GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++R ++ + + + + + +L YA + + E+ +L Sbjct: 316 GLELDPEELDQVRSMSSRLSLSFVINLLEAIDQWENKLRYALHKEVLFEIAILELSQLKE 375 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 ++ + E + + + P +Q + + Q Sbjct: 376 KVAIEELLAQWRVQGEESSENLKGEKTALSTPPLPEEQGKKEEETTLPQALFPSVQAGNP 435 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 G + + + A E + + + + L ++ Sbjct: 436 PSGTKEQPQGGSLTPVGTQKKEQTAAELFSHSPPPLSPQEQWAKLVES------------ 483 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL--SLPKLVEQV 539 K + E + E + + L + K+ + Sbjct: 484 --FAADKADFRSLADKLYFYECRSEELIIQHALTEEDFSRRLSPFIPLLAKEVKKVFNKK 541 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + ++ TP Sbjct: 542 LSFYPLHLKPSGLTAAESPTKNK-----------------------------RKSYSPTP 572 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + +A S+ D I+ F ++ Sbjct: 573 EKNNPPQEHFLVDEA--SLKNDPLIKEALELFKGKILR 608 >UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BXR7_BEUC1 Length = 841 Score = 338 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 165/683 (24%), Positives = 256/683 (37%), Gaps = 88/683 (12%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFADV+GQEHV L L R HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFADVIGQEHVTGPLMAALRSDRATHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+C E+ +G +D++EIDAAS V+D RDL + +APAR R+K+ Sbjct: 64 AQGPTDTPCGTCDSCVELARGGPGSLDVVEIDAASHNGVDDARDLRERAVFAPARDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPP HVKF+ ATT+P ++ TI SR + + + + Sbjct: 124 FILDEAHMVTAQGFNALLKLVEEPPPHVKFVFATTEPDRVIGTIRSRTHHYPFRLVPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 + L + E +A P L L+ RA GS+RD++S+ DQ +A D + A+L Sbjct: 184 LGDYLAQVSEAEGVAVAPGVLPLVVRAGGGSVRDSMSVLDQLMAGADSDGLDYDRAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A +G V +I+ G + + ++L L + ++ + Sbjct: 244 GFTHATLLDDVVDAFAAGDGATVFRVIDNVIESGHDPRRFVEDLLERLRDLIVLAAAGDQ 303 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L RMR A+ + + + G E+ A R+ +E+ R L Sbjct: 304 AVAVLRAIPEDQVERMRGQAQHLGAARLSRAADLVNAGLTEMTGATSPRLQLELLCARIL 363 Query: 358 AFHPRMPLPE---------------------------PEVPRQSFAPVAPTAVMTPTQ-- 388 R++ A P P Sbjct: 364 LPATPAAATGVEPRSAGTSGPASGSAPSGGAGSAAGAAPSRRETPAQPVPRTERPPAPER 423 Query: 389 -------------------------VPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 ++ P+ A +V ++ AAR+ Sbjct: 424 GAPSRAAAEPPAASAARGERERGSAARAADEAGPESAGSVASGSAEAEPGAARRGAPATD 483 Query: 424 GATKAKKSEPAA---------ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + ++ + A P A V P + E A + Sbjct: 484 APARRQQPDARPGGGDDVEGRGAGAGPEAEEAPGSAEPPRSEVSDEEAPRSGEPAAGQSR 543 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE-------------RD 521 + P + A A ++A R Sbjct: 544 SEVSDEEAPRSEVPAEGPPHPQEAAAGRTPSEAPAAGPVSAAPQPDPSPLTGTDAATVRR 603 Query: 522 PWAAQVSQL-SLPKLVEQVALN--AWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEAL 576 W + L + ++ + S + L + N + L AL Sbjct: 604 RWPEVLETLSGIRRVTWTLVAQNAQVASISAGVLELAFATEGLAVTFRNGTHAEALERAL 663 Query: 577 SMLKGSTVELTIVEDDNPAVRTP 599 G V + D P Sbjct: 664 HETLGLDVRVRATIGDAAPTSPP 686 >UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C46EC Length = 614 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 179/523 (34%), Positives = 269/523 (51%), Gaps = 17/523 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V+AR++RPQ F++++GQEHV AL N L GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 16 AYTVVARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKA 75 Query: 62 LNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC T TPC CD+CR + G VD++EID AS KVE+ RDL NV + PARGR Sbjct: 76 LNCLKTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPARGR 135 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS +FNALLKTLEEPPEHVKF+LATT+ QK+P+TILSRC +F + Sbjct: 136 YKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVG 195 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +I QL+ I+ E + AL+L+AR A GS+RD+ SL DQ +AS G ++ V+A Sbjct: 196 PGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTA 255 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT DD+ + L +A++ + + + I E RG++ L+ +++ + +V Sbjct: 256 VLGTAGDDRVIELAKAILANDPKTALDRIAEWVERGLQIGELIDQVVEYWRALMLVSCGG 315 Query: 300 AAL--GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + +R A+ + + + L + + P ++ +EM ++R Sbjct: 316 PDVRELPVSPNQHEAIRTQAKAVSLDTVLAGLEILTATKARMRGTPHVQVLLEMAVVRLC 375 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 L + AV P ++ P T + LA+ Sbjct: 376 RLPDLRSLSQLVQ-----------AVSQPGVQFVASAASNGNPPPARPQPTPAAPLASEA 424 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + AT + SE +++ V L T R A EK P + R Sbjct: 425 AKKNGTPATAGRPSENGSSSVPAEVTATPLSDATVQTVW--DRFFRYATEKYPILSQHLR 482 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 + ++ + + + E E + +A++R Sbjct: 483 YASSYAIFGPNALAVRFPTSYANAKKECEGEASLARFQDALKR 525 >UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C8M2_MICLC Length = 1159 Score = 337 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 159/681 (23%), Positives = 264/681 (38%), Gaps = 59/681 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP F DV+GQ+HV L L+ R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T TPCG CD+CR++ G +D++EIDAAS VED R L + +AP R Sbjct: 60 CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+ +IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + Sbjct: 120 RYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 E + LE + EE ++ E L L+ RA GS+RD LS+ DQ IA + +GQVS + Sbjct: 180 PPEPLIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQEGQVSYELA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG + +++A+ + V +++ G + + ++L + + + Sbjct: 240 VSLLGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARA 299 Query: 298 SPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P G R+ A + ++ + ++ A R+ +E+ + Sbjct: 300 LPEEAGAILHGMPEDQVRRLSAQAAQLSRAELSRLADITNLALTDMVGATSPRLHLELLM 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L ++ P + + P + Sbjct: 360 ARLLLPASDETHRGLAARLEALERRLELGGAAPVEDGAPEGTTTPTRSGTPAADGGGSAG 419 Query: 414 AAR----------------QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 A + + A+ A + A T Sbjct: 420 NAEGSGPLTGAALARAAMRRPEESAPTASTAPPERWTPPAPQSVAEAPEGDAAAGATGSE 479 Query: 458 QARPVPSALEKAPAKKEAYRWKATTPVM-------------------QQKEVVATPKALK 498 + + P PA+ A P P Sbjct: 480 RPQQAPQPGRPEPAEVGARSEDVRRPEAGNRPEPEGRPEPEGRPQAQDSTGAAPAPAHGP 539 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL---NAWKEESDNAVCLH 555 + +P A + + R W ++ L + + + + + + + Sbjct: 540 EETAAPSSPTPAPAASQVEMIRRAWPDILAALEDASRLVWMLVKDNASVAGYDGSLLTIG 599 Query: 556 L--RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA-----------VRTPLEW 602 ++ L RG + L EA+ + G L ++ + P Sbjct: 600 FQQDGPRQSLLGRGGDRVLGEAVHQVLGIRPRLDLILGGDAPTGDARAQSGTRPAGPART 659 Query: 603 RQAIYEEKLAQARESIIADNN 623 + + A N Sbjct: 660 DRPERPASQQSRPDRPAAQPN 680 >UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8S0_CARHZ Length = 511 Score = 337 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 214/354 (60%), Gaps = 2/354 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RKWRP+TF+++VGQE ++ L N ++ ++ HAYLFSG RG GKT+ A++LAK + Sbjct: 2 YLALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C I +++ EIDAAS +++ R+L ++++ PA+G++KV Sbjct: 62 NCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHV F+LATT+ K+PVTI+SRC +F K + + Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L++I +E + +E AL L+A A+EG LRDALSL DQ + ++ + +LG Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPK-ITVEDTLKVLG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L L+ A+ E N +++ I E RG++ + + ++L + + + + Sbjct: 241 FVSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVR-YLNLIKNGIEV 299 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 M + ++R A + L + + +E+ YA R+ E+ LL+ Sbjct: 300 EELMPEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIWAEVGLLKV 353 >UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcus oceani RepID=Q3J800_NITOC Length = 529 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 221/535 (41%), Positives = 303/535 (56%), Gaps = 15/535 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F VVGQEHV+ AL NGL GR+HHA+LF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+ +TPCG C NC+ I+ G FVDLIE+DAASRT V+DTR+LL+NV YAP+RG + Sbjct: 61 SLNCKEGVRSTPCGKCQNCQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYAPSRGHY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHM S SFNALLKTLEEPP H+KFLLATT+P+KLPVT+LSRCLQF+L+ + Sbjct: 121 KVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSRCLQFNLRRITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L IL E I E AL L+ARAAEGS+RDALSL DQAI G GQV V M Sbjct: 181 KAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLLDQAINYGRGQVMVADVRTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+++ L++A++ NG+ ++ + E A ++ ++L ++L LL R+A+ QL+P Sbjct: 241 LGSIEQGDLFILLDALLAGNGQGLIEKVREICAYSVDISSILADLLHLLQRLALYQLAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA P ++QL+YQ LIG ++L YAPD EM LLR L F Sbjct: 301 TVDDI--DERGIFSSLAARTTPEEVQLFYQIGLIGSRDLTYAPDHHTAFEMILLRMLCFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P S T + Q+ + PL S + Sbjct: 359 P--------ADGASSCQALTNPKPEKTGLASSDPPLAQETTSPPL----SGNDHWPGLVT 406 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ A++ A R L+ S+ + R L++A + + Sbjct: 407 QLKLTAIARQLAENCALERREEGIIYLQLAPSMANLHSKRAE-ERLQQALEEYYGEAIQL 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + T + +K + + +A + ++L L + Sbjct: 466 IIRIADSTLGTDTVASRRKQEDATWQQAAVESIQNDANIKALSETFNARLPLDSV 520 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 2/157 (1%) Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEE- 547 + + PK K L P + D W V+QL L + Q+A N E Sbjct: 367 QALTNPKPEKTGLASSDPPLAQETTSPPLSGNDHWPGLVTQLKLTAIARQLAENCALERR 426 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP-AVRTPLEWRQAI 606 + + L L S +L+++ A+++L +AL G ++L I D+ T R+ Sbjct: 427 EEGIIYLQLAPSMANLHSKRAEERLQQALEEYYGEAIQLIIRIADSTLGTDTVASRRKQE 486 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A ESI D NI+ L F+A L +S+RP+ Sbjct: 487 DATWQQAAVESIQNDANIKALSETFNARLPLDSVRPL 523 >UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBX8_THET1 Length = 550 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 148/428 (34%), Positives = 225/428 (52%), Gaps = 6/428 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R QTF ++VGQEHV L N + G+I HAYLF G RG GKTS ARLLAK Sbjct: 1 MS-QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + T PC C C I +GR VDLIEIDAASR KVED D+++ V +APA R+ Sbjct: 60 AVNCLSEGT-KPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP H F+LATT+ K+ TI+SRC +F + + Sbjct: 119 KVYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITP 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L I E+I + AL +A+A+ GSLRDA+S+ DQ GD +++ + V + Sbjct: 179 REIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +D + V A+++ + + ++L+ + + G++ E++ L + +++ Sbjct: 239 LGIVGEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKAYNQ 298 Query: 301 ALGNDMAAI--ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + A + + + + + +E L Sbjct: 299 NASKAGIERVSLQAISDQASMVSIGRLHEITEKFSTLDYTIRTGSYGYLPLE--LAAVAL 356 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + E ++ A T + + + A + + + TS+ AA + Sbjct: 357 TNKDSQPYERTENQRQQPNPAHTNSKSVIHRVEEVAEDVKDAISDIVAKVTSKNDAALPE 416 Query: 419 LQRVQGAT 426 Q Q Sbjct: 417 AQTSQSEP 424 >UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 Tax=Micrococcineae RepID=A0JSD4_ARTS2 Length = 1078 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 163/676 (24%), Positives = 261/676 (38%), Gaps = 62/676 (9%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA Sbjct: 1 MSVTTALYRRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + LNC G T TPCG C +C E+ +G +D+IEIDAAS V+D RDL + YAP R Sbjct: 61 RCLNCAEGPTDTPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVR 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + Sbjct: 121 DRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRL 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQA 236 + E + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A +G + + Sbjct: 181 VPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPTGLDYEL 240 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 A+LG +VEA+ ++ V ++ G + + ++L + +VQ Sbjct: 241 AVALLGYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQ 300 Query: 297 LSPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 P + + A R++ A + ++ E+ A R+ +E+ Sbjct: 301 AMPESAQSILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELL 360 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVM---------------------------- 384 R L Sbjct: 361 CARILLPTSEQTERGIAARIDRVERRLNYGGNDVGTPAAAATASSAPAPSAPVPAAVPAP 420 Query: 385 -----------TPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEP 433 P++ + P Q A + + ++ Sbjct: 421 AASPVPAAAPAASLAPAAVPRATSETPAPAPAASAPEQPAAPEAPARESLTPPRVSTTDW 480 Query: 434 AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 +A+ + A P + + A A A PV Sbjct: 481 PVDESQAANRSASGPAPSRPAGPQPAVPEAAFPQAPAAPAAASGPSAPAPVEPVAAARTP 540 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL---NAWKEESDN 550 + E+ + + R W + LS K + + Sbjct: 541 LRPEAGQPVAERNVPAPNASSDVEVLRRAWPEVLQTLSKIKRSTWALVEPNAQVGQFDGQ 600 Query: 551 AVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV----------EDDNPAVRT 598 + L +S + L +A+ G ++ V E + A + Sbjct: 601 VLTLAFTTSGLAGAFGRADHSENLRQAIHKTVGIDCQINAVSGGASSSASSEPNPKAPAS 660 Query: 599 PLEWRQAIYEEKLAQA 614 P + ++A Sbjct: 661 PASPETPAGPKAQSKA 676 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 200/348 (57%), Gaps = 10/348 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L RK+RP+ F++VVGQ HV T N L G I HAY+F+G RG GKT++AR+LAK LN Sbjct: 2 QALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C+ C+ I+ G F+D++EIDAAS +++ R + + V Y A+G +KVY Sbjct: 62 CENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K L +E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNLTIEDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +LE + +E+I AL +A+ A G +RDAL++ +Q S ++ + V LG Sbjct: 182 IKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKDITIEDVRETLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + + +++++ + ++ +I + G + E L+++L + I ++ L Sbjct: 242 VPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEEM--ILKIESGDYELI 299 Query: 304 NDMAAIELRMRELARTIPPTDIQLY------YQTLLIGRKELPYAPDR 345 + + ++++ + L L R+ + ++ Sbjct: 300 EFLKPLSEILKDI--KYSEEKLILIKLGFLSVMKLKPPRENIKKNVEK 345 >UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=15 Tax=Betaproteobacteria RepID=Q1LLG8_RALME Length = 795 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 214/513 (41%), Positives = 279/513 (54%), Gaps = 6/513 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNCETG-----ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC ITA PCG C C EI+ GRFVD IE+DAAS V++ LLD YAP Sbjct: 61 ALNCTGPDGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAIYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+HIL +E I+H+ AL+LLA+AA GS+RDALSLTDQAIA GQVS + Sbjct: 181 KQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQAIAYSAGQVSEE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG +D + L++A+ +G ++ + + A R + + L ++ LLH++A+ Sbjct: 241 AVRGMLGAIDQSYLVQLLDALAAEDGATMLGIADSMADRSLSFAGALQDLGSLLHKVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PA++ ++ +R LAR + QL+YQ +GR EL APD G MTLLR Sbjct: 301 QAVPASVQDEWPE-AEDVRRLARQFDAQETQLFYQIANLGRSELALAPDEYAGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P + T A A P+ +V Sbjct: 360 MLAFRPSTAPASSVGGQGGGGQQVVRPRPAGTTSAAPSPRAMASAVAEPVAAEPVKVAPV 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 T A + AA +A P +AL A Sbjct: 420 VAPAAPTAPITAAAPAASAAPAMPAVPAKSAEPAPPQADVDTSMSPARAALAAARQASAG 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 + + A + Sbjct: 480 RAGRPMSAAPNAGAAAAASSRPAAQPLRPPSAS 512 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 3/229 (1%) Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + A + PV + A + Sbjct: 567 PEAKSVPPWEAAGASDVPPWEEMPPDLPVIGPYDSDPGYDPSFGGFDNGFDSDSADRAPR 626 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A + T + A + A + A + + W + L L Sbjct: 627 AARKPAPTQSAAKPISKPEPEPAAQLAPAVPQVAPSAGEDGTPPVFTGDWPEFAATLPLK 686 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 L +Q+A + LHLR + ++L AL V + V Sbjct: 687 GLAQQLAHQSELHRVVGR-TLHLRVPVAAIAEANVAERLQAALVEHFRVDVRVQCVVG-- 743 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T A E+ +A I D +Q L R F ++ SI+P Sbjct: 744 GVTHTAAAVDAAARAERQREAEAEIDRDPFVQGLLREFGGQIVPGSIQP 792 >UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ85_9FIRM Length = 525 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 149/416 (35%), Positives = 216/416 (51%), Gaps = 4/416 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R+WRPQ FAD+VGQ+HV L N L R+ HAYLF G RG GKTS A++LAK + Sbjct: 2 YQALYRQWRPQFFADMVGQQHVARTLQNALEQDRLAHAYLFCGPRGTGKTSAAKILAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE G + PC C CR I+ GR +D+ EIDAAS +++ R+L + +Y+P R KV Sbjct: 62 NCEKGPSREPCNECAACRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPVEVRHKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHML++ +FNALLKTLEEPP V F+LATT+P KLP TI+SRC + + + Sbjct: 122 YIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQRLDFHLIGMTD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++++ + + AL L+A A G LRDALSL +Q +A +G +S + V A+LG Sbjct: 182 IAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSEGNISDEDVLAVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA- 301 + D ++++ + + L+ E AA G + + + + + Sbjct: 242 AVGRDVYYRFTDSLLRRDLAAALLLLQEVAAGGKDLHHFTRQAISYYRDLMVALTCGDDA 301 Query: 302 -LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+ + AR + I L E+ +A R+ E+ + R +A Sbjct: 302 VALGIAPDWAGRLHKQARQLGMGTIGHILSELHGLLNEVRWASRPRLLWELAIFRIMAPQ 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 E P A V P + P Q Q+ P ET S R Sbjct: 362 AEDRQQEL--PVSKPADVKPDNTPVVKETPAQNSFPEQKRAAEPAGETASIENLPR 415 Score = 49.6 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 50/203 (24%), Gaps = 23/203 (11%) Query: 443 NNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE 502 N + + + + + ++ A VV A E Sbjct: 338 NEVRWASRPRLLWELAIFRIMAPQAEDRQQELPVSKPADVK-PDNTPVVKETPAQNSFPE 396 Query: 503 HEKTPELAAKLAAEAIERDPWAAQVS--QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQ 560 ++ E A + A+ W + + K + + + L Sbjct: 397 QKRAAEPAGETASIENLPRLWPRVLELVRKESVKTHALLLSGEVSSCDEKVLELQFSGPF 456 Query: 561 --RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESI 618 + + ++ L + L + + V N + Q + Sbjct: 457 HCEMMESAENRRSLQKVLKKVFAVEPAIRCVVGKNGS--------------LQQQ--QPE 500 Query: 619 IADN--NIQTLRRFFDAELDEES 639 D I + F + +ES Sbjct: 501 EKDPAELISSAVEIFGGRVIDES 523 >UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=B1VIS6_CORU7 Length = 1102 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 157/573 (27%), Positives = 251/573 (43%), Gaps = 10/573 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG CD+C + G +D+ E+DAAS V+D R+L D YAPA R++V Sbjct: 62 VEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYAPADSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FN LLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNYPFRLLTPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R L I+ +E E L+ RA GS RD+LS+ DQ +A +G V+ Q A+L Sbjct: 182 MRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGPEGVTYQRAVALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D EA+ + + A++++ G + +++L + +VQ P A Sbjct: 242 GVTDSSLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDLLDRFRDLLVVQAVPDA 301 Query: 302 LGNDMAA----IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + +R+ A + P + + G ++ A R+ +E+ R Sbjct: 302 FERGLVDVPAQEQDALRQQAEALGPATLTRCAAVVNDGLSQMRGATSPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M + ++ P S A P + + R Sbjct: 362 LPAAGMTVEALAQRVEALEQGTGVRAAGPMGASGGLASPAVGAGASPTGDASGLSSGKRY 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + R + A+ S + A + + E + + ++ Sbjct: 422 ERPRRRKASAEAASAESGAAEPQNAVSQGAEPKGAQPQGAAPQQPEQPGNADAQPGQS-- 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 +A P + + + + + AA EA + A + + Sbjct: 480 AQAGAPAQSGQPGQQAADQSGEQADGQSAAQGAAPATQEATSQPEKPAVQETAEVA-RAQ 538 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 Q A NA +++ + ++ + Sbjct: 539 QPADNAQEQQGAEPAAQDVNAAAQSARQESNAA 571 >UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bacillus cereus group RepID=B7IZ38_BACC2 Length = 548 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 144/408 (35%), Positives = 220/408 (53%), Gaps = 9/408 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP F++++GQ H+ + N L L + HAY+F+G RG GKT+IA+L+A L Sbjct: 2 YQALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE+ PC C C+ I D++EIDAAS VE R++ + V YAP G++K Sbjct: 62 NCESLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLKTLEEPP+HV F+LATTD K+P TI+SRC +F + + Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGPR 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 I +L H+ +E + E ALQLL A+G +RDALSL DQ IA + ++ VS + Sbjct: 182 DIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSEV 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + ++ + + +++ N ++ LIN+ G E LL +++G L + + + Sbjct: 242 VGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFEV 301 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 N AI + EL +Q+ + L + E+ ++ + ++ +E+ L++ Sbjct: 302 KEDNITTAILNSKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQL--- 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + E V T P +PTV P Sbjct: 359 ---ATEAQEENRLIKKINELEKRVRELTSSGSVPVRPKSFSPTVQQPA 403 >UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 Tax=Gammaproteobacteria RepID=A1AWB5_RUTMC Length = 529 Score = 335 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 181/406 (44%), Positives = 254/406 (62%), Gaps = 12/406 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP +F +VGQ H L N L +HH +LF+GTRGVGKT+IAR+L Sbjct: 1 MSEHYQVLARKYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK +NCE GI++ PC C C EI++G+ +DLIE+DAAS T V++ RD+L+N QY P++ Sbjct: 61 AKSINCEQGISSKPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMRDILENAQYMPSKN 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+YLIDEVHMLS++SFNALLKTLEEPPEHVKFLL TTDPQKLPVT+LSRCLQF L+ L Sbjct: 121 RYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTLQQL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++I QL+ I+N E +++E AL +A GS+RDALSL DQ+I+ G G V+ + Sbjct: 181 THDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISYGKGTVTNADIK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 AMLG + D + L + + + V+ I + + RG L ++ L H+I++ Sbjct: 241 AMLGLVHHDDIIKLTTHLFSQDAKAVIDFIKDLSRRGENLSNALKDLSSLFHKISI---- 296 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ L+ I D+Q++YQ + G K++ AP ++G EMTLLR LA Sbjct: 297 ---SQIVNTESNKTIQNLSTQISNFDLQIFYQMSINGSKDMALAPSEQIGFEMTLLRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 F +P ++ + + P + QP+ + T P Sbjct: 354 FRSD---TQPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGITKP 396 Score = 79.3 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 68/170 (40%), Gaps = 3/170 (1%) Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + ++ + ++ P K + E+ P + + + W + L Sbjct: 359 QPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGITKPTILDINNQQQWETLIQTLEFKN 418 Query: 535 LVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + N + ++N + L L + +L + Q+ + L ST+ L I Sbjct: 419 GAQILVKNTLFDNTNNATLTLTLDNQFANLLSDQVQKSMLTTLRQK-NSTLNLVINLG-K 476 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P +T + + + EK+A+ + + D +Q L + FD +++ SI+ I Sbjct: 477 PNAQTLAQKQTQAHNEKMAKIQTQFLNDKGVQKLEKIFDTKININSIKKI 526 >UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QAW7_PSYCK Length = 685 Score = 335 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 229/671 (34%), Positives = 330/671 (49%), Gaps = 44/671 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L+K L Sbjct: 5 YQVLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+TGIT+TPCGVCDNC I+QGRF+DLIEIDAASRTKVEDTR+LLDNV YAP++GR+KV Sbjct: 65 NCDTGITSTPCGVCDNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPYAPSQGRYKV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 125 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRCLQFVLRPLSQSL 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ++L +E + + AL LA AA+GS+RDALSLTDQAIA G G + V++MLG Sbjct: 185 LSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGALDDVTVNSMLG 244 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D +SL+ + + V A I + A+ ++ ++ + LLH++A+ QL P Sbjct: 245 LIDAADLVSLITDIYNHDKPAVAAHIEQMRAQMVDASSMFDGLAELLHQLALCQLLPEVA 304 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 N A + +LA+ + P +QLYY+ ++ R+ + A +EM +LR LAF P Sbjct: 305 LNVNEAQAQHIDQLAQHMSPDVLQLYYEIVVQAREGVKLASTPMQALEMCILRLLAFRPL 364 Query: 363 MPLP--EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + A PT ++ + +P S+ + T + + Q Sbjct: 365 PVDEILANVLDSTVMAIEKPTTTVSSATLITEPVSSSLELQTQSDNIVYENIDTSVNDKQ 424 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 V + E + N T + +E + Sbjct: 425 DVGADNSITQHEQYYSNDEASHLNQYDNSSVYDTLELSNNQPEPVVEPVVEPVVEPVVEP 484 Query: 481 TTPVMQQKEVVATPKALK-----------------------------------KALEHEK 505 + + V + + ++ + Sbjct: 485 VVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPEVNDSQLLIQSEDPRA 544 Query: 506 TPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ----VALNAWKEESDNAVCLHLRSSQR 561 + + W + + Q +A S NA + ++ Sbjct: 545 LLRCPPQELIGEWTPEKWDYWLQTAREAASLAQDELALARQGMMTGSCNAEAI-FVTAVD 603 Query: 562 HLNNRGAQQKLAEALSMLK-GSTVELTIVED-DNPAVRTPLEWRQAIYEEKLAQARESII 619 + + ++LA + + + + L I +TP +Q E A + Sbjct: 604 SKHLQATFEQLATKMQVQFPDAAISLRIDSSIAQADDKTPERRQQKRLVEAKTVAESRLF 663 Query: 620 ADNNIQTLRRF 630 +Q L Sbjct: 664 NTPVMQYLTER 674 >UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C3F0 Length = 944 Score = 334 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 156/580 (26%), Positives = 252/580 (43%), Gaps = 19/580 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARL 57 L RK+RP +FA+VVGQ HV L+ L RI+HAYLFSG RG GKTS AR+ Sbjct: 2 ALYRKYRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARI 61 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 +A+ LNC G TATPCG C +CR + G +D+IE+DAAS VED R+L + + P Sbjct: 62 MARSLNCAEGPTATPCGQCASCRALAPGGPGNLDVIELDAASHNGVEDMRELREKAIFQP 121 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 A R+++++IDE HM++ FNALLK +EEPPEH+ F+ ATT+P+++ TI SR + Sbjct: 122 AESRYRIFIIDEAHMITASGFNALLKIVEEPPEHLIFIFATTEPERVLPTIRSRTHHYPF 181 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVST 234 + L +R LE ++ E + EP L+ +A GS RD+LS+ DQ IA V Sbjct: 182 RLLTPPDMRGLLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQLIAGSGTDGVDY 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +A+LG D +EA+ + + +++ G + ++LG + + + Sbjct: 242 ETSAAILGVTDSVIITDAIEALAAGDRAAMFSVVGRVIMSGQDPARFASDLLGRVRDLLV 301 Query: 295 VQLSPAALGNDMAAIELR----MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + P AL + I + E A TIPP + + Q L G + R+ +E Sbjct: 302 LSAVPNALEQGLVEIPESQIDGVLEQAGTIPPATLTRFTQVLSDGLRHFRGVTSPRLLLE 361 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + R L + ++ + P SAP + P Sbjct: 362 VLCARMLLPATEDSVESLLQRVEALE--HGRPALADGSGAATPASAPVSSDAGPGSGAAE 419 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + Q Q + A + + ++ + + + + Sbjct: 420 ADASPMQSGQSAREAWRQRNAQRKKGAQTQGSRAGQAAPAQTPSQPQSQPEPVQQQPAPA 479 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK---TPELAAKLAAEAIERDPWAAQV 527 A + T P + AT + ++ + E + +E E+ + Sbjct: 480 AAAPVSQESVTEPQPAPEAPTATAEQPEQPTQAESVEQPQQAEQPQQSEPAEQPMSEEEA 539 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRG 567 + + ++A +A E L Q+ G Sbjct: 540 QAEKIREFRRKMAEHARISEQQTRAQLAQEREQQTREREG 579 >UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 Tax=Hydrogenothermaceae RepID=B2V5N0_SULSY Length = 501 Score = 334 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 142/410 (34%), Positives = 213/410 (51%), Gaps = 12/410 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ +RK+RP++F +V+GQEHV+ L N + L R+ HAY+FSG RGVGKT+IAR+L+K Sbjct: 1 MAYEAFSRKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ + C C+NC EI++G F D+ EIDAAS ++D R + DNV Y P +G++ Sbjct: 61 VLNCKNPVDYESCNQCENCIEIDKGSFPDMYEIDAASNRGIDDIRMIRDNVGYQPIKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKTLEEPP F+LATT+ K+P TI SRC F K Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQTFIFKPPTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI++ L ILN E I +E A++LLA+ EG +RD+ SL DQA+ +G+++ + V + Sbjct: 181 EQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASLLDQAVTYAEGKLTRKDVEEI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + + + + LI+ G + ++L +H+ + Sbjct: 241 LGIVPYSYVQKFLRNIKDLKVDENIKLIDTLEDEGYDINVFWKQLLEAIHKTLI------ 294 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L D + E D + +T+L+ L Sbjct: 295 DLALDKEDEIF------SKEDLKSLIYLKTIFTKTYSEARTFFDPKQIYHLTILKTLYLD 348 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + + P V+ P + Q QQ P E Sbjct: 349 SIKRIEQLFAEGVQVVPKKEPEVLKQEIKPQEKQETKQQEEIKPKEEQKQ 398 >UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD6_9FIRM Length = 655 Score = 334 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 156/665 (23%), Positives = 271/665 (40%), Gaps = 43/665 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ+F ++VGQ + L N + ++ HAYLF+G RG GKTS A++LAK Sbjct: 1 MSYQALYRVWRPQSFDELVGQPLIAETLKNAVKNQQLSHAYLFTGPRGTGKTSAAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RDL D V+YAP++ + Sbjct: 61 AVNCPHQTDGNPCNQCELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKVRYAPSQATY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP V F+LATT+P K+P TI+SR +F + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQRFDFGRISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++++IL ++ I E AL ++ARAA G +RD+LSL DQA++ V+ Q+ + Sbjct: 181 ADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSYNRSAVTVQSALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L + + A+ +G + ++++ + G + + E++ + + S Sbjct: 241 TGSLSQLVYIDYLTALQAQDGPKALSILQASLQEGKQANRFVEELILFCRDLLLTLNSKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A +R+ + L ++ +A + VE+ + Sbjct: 301 NFTLLTEAELKPLRQAGDNC---FYYNLIERLNQALNQMRFATQADLFVEVATIELAQEV 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ + + A + +V AP +P + + ++ Sbjct: 358 ANEPVAS-GLESGTVADLVRQVQALEAKVRQLEAQLRAGAPAQAVPSPQAPAEDDQPRVP 416 Query: 421 RVQGATKAKK-----SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 R + A + + A + + + P + A Sbjct: 417 RERPAGQRQAYHLDTDAIYAVLNEATRQDVSQLKSGWAAWLESLPPQDRVRLTGAEVQAA 476 Query: 476 YRWKATTPVMQQK--EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + Q V + L + +A + + W+ + Sbjct: 477 GPERILLAFKSQDFCGRVQQDADFVQELSRQLARHFDRPVALAFVLQSEWSQVRQTYKV- 535 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL--SMLKGSTVELTIVED 591 +++ + + + L + + S S ++ + Sbjct: 536 ----------LYDQAGGPIKIGAVAEPIRLALEAEPLEAEQTSPPSDDFQSLEQVMMDLP 585 Query: 592 DNPAV------------RTPLEWRQAIYEEKL-------AQARESIIADNNIQTLRRFFD 632 + P TP + +E L AQA + + F Sbjct: 586 EAPEASEPGTDLFGLPMETPEPAQPVADQEDLPTVDPVFAQAPDQDSLPPVVSQALALFG 645 Query: 633 AELDE 637 ++ + Sbjct: 646 QDVVD 650 >UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKL9_9BACT Length = 534 Score = 334 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 139/415 (33%), Positives = 218/415 (52%), Gaps = 1/415 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARK RPQ F ++ GQE V+T L N + +GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 1 MSYIALARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTSAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + + PC C+NC EI G +D++EID AS +++ R+L + V++ P + +F Sbjct: 61 AVNCLEPVGSNPCNKCENCTEITSGTSMDVVEIDGASNRGIDEIRELREAVRFLPVKCKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP++V F+LATTDPQ+LP TI+SRC ++ + Sbjct: 121 KVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRCQKYDFNKIPF 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ E I ++ AL L+ R ++G +RD+LSL DQ IA G++ Q+ S + Sbjct: 181 EIMYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLLDQIIAFTGGKLDEQSTSFL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L +++ E + I E + +G+ + ++G + M ++ Sbjct: 241 LGFSEKSLVDKLFALIIKEQPEEIPDAIEELSGKGVNFAFATETLIGHTRNLLMQLITKK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +EL + + +Q +L + + E + +A Sbjct: 301 ENKELTSKENDYYKELVKNTSEQQLYALFQVFQKLLNDLKFFSFEQYIFEFGMYKAANIG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTP-TQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + S V P + +P + + Q + Sbjct: 361 SVISSKGLASQTSSDTTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIP 415 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 + + T + L++ +E + V Q L + Sbjct: 368 LASQTSSDTTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIPGSLSSMLGHGYI 427 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS----MLKGSTVELTIVEDDNPAVRTPL 600 +D + + S ++ + + + +AL+ S ++ V + + ++ + Sbjct: 428 VHIADKVLTIGFSSEKKFYFDFVNRAQNMQALNRIIPAAFNSIDQVKTVIEQDTKKKSIV 487 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 E +Q I + R+ D +Q + R FD +L++ Sbjct: 488 EKKQTIETFHEKKIRQEAKEDGLVQKIIREFDGKLED 524 >UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Bacteroidetes RepID=A0M2F5_GRAFK Length = 653 Score = 333 bits (854), Expect = 9e-90, Method: Composition-based stats. Identities = 149/676 (22%), Positives = 277/676 (40%), Gaps = 64/676 (9%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + V ARK+RPQTF DVVGQ+ + LAN ++ + A LF+G RGVGKT+ AR+LA Sbjct: 1 MEHFVVSARKYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +N + + ++ E+DAAS V+D R+L+D V+ P G Sbjct: 61 KMINQKETQDP------------NEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGN 108 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + Sbjct: 109 YKVYIIDEVHMLSASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRIT 168 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V ++ L HI +E + E AL ++A+ A+G++RDALS+ D+ ++ ++ QAV+ Sbjct: 169 VTDAKNYLAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFSGNDLTRQAVTE 228 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D + + + ++E N +++ N+ + G + + + + + + Sbjct: 229 NLNVLDYDTYMEVTDLVLENNIPQLLVKFNDILSSGFDGHHFIAGLASHFRDLLVCKDQK 288 Query: 300 AALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + + E ++ + + + + ++R+ VE+ +++ + Sbjct: 289 TIILLEVGEQTKAKYFEQSQKASHQFLFEAIELANSCDLKYKSSHNQRLLVELCMMQLAS 348 Query: 359 FHPR------------------------MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 E + P Sbjct: 349 ITFDSEKKKSDRKIIPASNFEQEAVSIPSEKKELVRENEHDISSPSEESSIPKPKVATET 408 Query: 395 SAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVT 454 A + E+ +++ + + + + K + S+ + + + S + Sbjct: 409 CAKENEEPYYSEESPAEINSVGEIPEEAEIQKKTEISDFTENEAQKTGEEDSEKPKTSNS 468 Query: 455 DRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 + V + A + + ++E V+ + E + A + Sbjct: 469 EIVNQDDKDAFETAAEEPSKETQPAKKAFPDIKREKVSGLSIKSIGRKKELAEQQKAMMP 528 Query: 515 AEAIERDP---------WAAQVSQLSLPK--LVEQVALNAWKEESDNAVCLHLRSSQRHL 563 E + D W +L ++ + + D + L + L Sbjct: 529 VEEVMDDDFNEEDLVKQWKNYTEKLKRKGEKILASIFESQIPTLEDRNIHLTFPNETMKL 588 Query: 564 NNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR---TPLEWRQAIYEEKLAQARESII 619 + + +L L + + L I D+ + + TP E + + Sbjct: 589 DLEREENRLMTYLKAHLRNTHISLIIHVDEATSRKYAFTPQEKYEKLK-----------E 637 Query: 620 ADNNIQTLRRFFDAEL 635 A+ + LR FD ++ Sbjct: 638 ANPLLDKLRATFDLDV 653 >UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax=Bartonella RepID=A9IMY3_BART1 Length = 646 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 172/643 (26%), Positives = 280/643 (43%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P V ++C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G VS V Sbjct: 189 IEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVSAAEV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPVLSRNWQMLLKGLQEVNQTARPLQATEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E + Q + Q+ ++ Sbjct: 369 LAHTADLPTLDEALKKLTQEKTPLTLVTNSSHQEAISVNNITQETTIDVHASSSVSNTLP 428 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + S ++ A + S Sbjct: 429 NQSDLKTSLQPPLDHSLKPENFVKNKTHDNAKAQEVIEILETSQSTDFSKNI-------- 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + V Q E + PK L H+ + L Sbjct: 481 --ANLSHSVTQPVEEITEPKTLVINSLHDIVKLAEQHS---------------DVPFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 V++ + L L + ++K+++ + + Sbjct: 524 VKEFVH--PVSFETGRITLRLSENTPQFLAHDIEKKISQWARKRY------VVTFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESVAIQKTLFSHA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 Tax=Gammaproteobacteria RepID=A1WTL4_HALHL Length = 554 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 238/553 (43%), Positives = 302/553 (54%), Gaps = 11/553 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ LARKWRP+ F DV GQEHVL ALAN L+ GR+HHAYLFSGTRGVGKT++AR+LAK Sbjct: 1 MTYQALARKWRPRRFEDVAGQEHVLRALANALADGRLHHAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA PCG CD+CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGRF Sbjct: 61 CLNCEHGITAEPCGTCDSCRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQFHL+ L Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFHLRRLSS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 IR +L + EE + + A LARAA+GSLRDALSL DQA+A G+G V+AM Sbjct: 181 TLIRDRLLALAEEEGVTVDAGAAARLARAADGSLRDALSLLDQALAFGEGAARDDEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ L ++ A+ + +G ++ A +++ L E++ +H +A+ Q P+ Sbjct: 241 LGAIERRHVLEVLTALADGDGAALVTAARHMAEVAADFDEALAELVATVHSLALAQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+G+D R+ LA I D+QLYYQ + R++LPYAPD G EM LLR AF Sbjct: 301 AIGDDEPE-RDRLLALAERIDAEDLQLYYQIGVNARRDLPYAPDPATGFEMALLRMHAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P Q P Sbjct: 360 PAEGAPRVAAPTDGGRSGTDGGAPVAGGGGAQAGGGPAAN----------ASAGVAPPEP 409 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +A +E A A + L+ + A E A Sbjct: 410 AAPPPGEAVGAEGATDEDAVARWTQIVGGLSGPLRMIAAHCEWVGREGARVILRLDESHE 469 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +++E + T ++ A+ A + + L A Sbjct: 470 YLNNAERRERLQTALGEAFGETITLQIDIGPTRWTPAMAERQQAQERQAEAEQALAGDPA 529 Query: 541 LNAWKEESDNAVC 553 L E D + Sbjct: 530 LQGLCEAFDGQLH 542 Score = 92.4 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 514 AAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 A + W V LS + +A + W V L L S +LNN +++L Sbjct: 423 ATDEDAVARWTQIVGGLS--GPLRMIAAHCEWVGREGARVILRLDESHEYLNNAERRERL 480 Query: 573 AEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 AL G T+ L I P TP + +E+ A+A +++ D +Q L FD Sbjct: 481 QTALGEAFGETITLQIDIG--PTRWTPAMAERQQAQERQAEAEQALAGDPALQGLCEAFD 538 Query: 633 AELDEESIRP 642 +L +RP Sbjct: 539 GQL--HGVRP 546 >UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY Length = 692 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 176/623 (28%), Positives = 258/623 (41%), Gaps = 60/623 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-IALYRKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQ--GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T PCG CD+C + G +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCAKGPTPDPCGECDSCVALAPDGGGSIDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E ILNEE + ++P AL L+ RA GS RD LS+ DQ +A D + ++ +A Sbjct: 180 PPNTLRELIEEILNEEKVPYDPAALPLVIRAGGGSARDTLSILDQLLAGSDERGITREAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG D +V+A+ +G V LI+ G + ++L + + ++ Sbjct: 240 VQLLGYTDSSLLGEMVDALGAGDGAAVFELIDRVVEGGHDPRRFAADLLERVRDLVVLNA 299 Query: 298 SPAALG----NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P AL N +MRE A + + + L G E+ R+ +E+ Sbjct: 300 VPDALDKGLINVPPDAVEQMREQASRLGAAQLTRAAEILNKGLTEMRGTTSPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L P A A + + P + P P T Sbjct: 360 SRILLPGVD--------PGDELALAARLERLERNGIAAAPAAPAVSPPAAGTPATAPPST 411 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + P+A P + A P P+A A Sbjct: 412 PAAAPRPSTAEPRPPQPPAPSARPHPAPAAADDWGAPRRPSQPAPAAPQPAAPGPAGEGS 471 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 RW + A ++ + Sbjct: 472 FDDRWPHIVEYLASNRKRAAHAIVRDGVHATL---------------------------- 503 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + L + R G + +AEA+ + G V + Sbjct: 504 -------------LQGRTLTLFFETEGLMRSFVTGGRARDIAEAVHRVFGLEVAVEAKAG 550 Query: 592 DNPA-VRTPLEWRQAIYEEKLAQ 613 + P + + + +AQ Sbjct: 551 HPGNVRQAPPQAPMSRPPQPVAQ 573 >UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2P9_DESAS Length = 527 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 218/395 (55%), Gaps = 9/395 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R++RPQ FA+++GQ H++ L N L RI HAYLF G RG GKTS A++LAK Sbjct: 1 MAYRALYREYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C + QG +D+IEIDAAS +++ RDL + V++AP G++ Sbjct: 61 ALNCHQIKGVEPCNKCSSCVSVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFAPTGGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPPEHV F+LATT+P KLP+TILSRC +F K++ Sbjct: 121 KVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFDFKSIGA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSA 239 E + +L+ IL + + P AL+L+ +AAEG LRDALS+ DQ I + ++S + + Sbjct: 181 EPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITFNNTAEISEEDIHN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT+++ SL+E ++ + + +I E G + + + + + + + P Sbjct: 241 LLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCVRDLLLQSIEP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ N + + L ++ ++ R+ +E+ L++ + Sbjct: 301 TAIKNFSRTD--------QIYSVEYLLALLDCLTELEPKMKFSSQPRVILELALIKFIYS 352 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 L + ++ P Sbjct: 353 RRDHLLQSINTKESTEIQNNQDMRVSLPSEVKLPA 387 >UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCW6_GARVA Length = 801 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 154/626 (24%), Positives = 272/626 (43%), Gaps = 46/626 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L+ L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NCE G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCEKGPTSHPCGECQSCKDLATGGAGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I +E I +P L+L+ RA GS+RD LS+ DQ + DG +S + Sbjct: 180 PPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + ++ ++ +G + ++ G + + ++LG + + ++ Sbjct: 240 VALLGFTPNSLISEFIDDLINHDGASIYDVVRRVIVGGYDTRKFVEDLLGRVRDLLLMVS 299 Query: 298 SPAA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + L + + + + ++ D+ QT+ + A RM +E+ Sbjct: 300 AGPKAASSLLNDVSPEDLEILNKQSASMTLHDLARMAQTINDALSAMASAISPRMNLEIL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + ++ VA + Q S V Sbjct: 360 V------------ARLLADSETSNTVATNLRINNVQQQNISTSTQNIQNKVSSGAHFVGS 407 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + ++ + S + T A P+ A + + + + + A +K Sbjct: 408 TSNKKYVSADSENNSTSNSSLPSETTASPIAKAETQSATNTKETESKKVFLNDAHNANSK 467 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 ++ A K V P +++ + E P + A +R Sbjct: 468 NDSMDTDAM----WDKVVSKLPDDVREYVTREYVPTVQLTSAQSGRQR------------ 511 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + N + A+ + S + + + + + G+ V + Sbjct: 512 ----LILTFNEPMSQHAFALAVCTTSPYD---GQKVPKVVMNEVHEIFGTQVMIAPAPVA 564 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESI 618 + +E + +KLA+ + I Sbjct: 565 ANGEQ--VESVARMDPQKLAKVKRDI 588 >UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ruminococcaceae RepID=C7H4D6_9FIRM Length = 625 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 156/589 (26%), Positives = 258/589 (43%), Gaps = 16/589 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRPQ F DVV Q ++TAL N ++ GR+ HAYLF+G RG GKT+ A++ AK + Sbjct: 9 YRALYRKWRPQRFEDVVAQRGIVTALRNQIATGRVGHAYLFTGVRGTGKTTCAKIFAKAV 68 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PCG C+ CR I+ G +D++E+DAAS V+D RDL D Y P+ +KV Sbjct: 69 NCLHPQNGDPCGECEICRGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACHYKV 128 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ QK+P TILSRC ++ + E Sbjct: 129 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 188 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++E+I +E + +L++R A+G++RDALS+ D A ++ V M G Sbjct: 189 IAQRVEYIAGQEGLELSGEGAELISRLADGAMRDALSILDTC-AGVTAKIDADVVRRMAG 247 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D + +A+ + +A + + + ++ + L E++ + + L Sbjct: 248 VTDRSYLFRISDALEAQDAAAALAQLAQLRQQSVDVKRLTEELIAHYRALMLAALPGGQA 307 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E E + + + L + + D+R+ +E+ L Sbjct: 308 LLSGVSPEEEKLYLEKGPRMGQREAIRAIRALGNALEHMTRGSDQRIELELALFSLSEPP 367 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 ++ + V P Q P+P ++ P V P ++ V + Sbjct: 368 QQVAVQA----------VPVARPAVPAQEAPRPFASAPVKPFVCAPAASAPVQEPSVEPA 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +Q + +P +A +A E + P ++ R Sbjct: 418 PMQQSEPEPAPQPVEPPKAEAAASAEEELPPLPEEPPVTSEAPPPWDEPALAAPPQREAP 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-LPKLVEQV 539 P + P+ + + A WA + L ++ Sbjct: 478 PAPAQEVPAAQPQPEPKPEYTADPALNKPRKVAAEGINPFPQWAEVIKLLQEQDPMLYTY 537 Query: 540 ALNAWKEESDNAVCLHLRSSQRHL--NNRGAQQKLAEALSMLKGSTVEL 586 + V + + R N+ +Q+ + + ++ + G V + Sbjct: 538 LKKSKGYFDGTRVLIDGGKTFRDFIRANKESQKLIKKLIAQVSGVAVPI 586 >UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI02_PETMO Length = 467 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 203/387 (52%), Gaps = 24/387 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L RK+RP+ F +++GQ HV+ N L+ + HAY+FSG RG GKT+ AR+LAK LNC+ Sbjct: 5 LYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCK 64 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PC C+NC I F+D+IE+DAAS +++ R++ D+ Y P G++KVY+I Sbjct: 65 DPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYII 124 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HML+R +FNALLKTLEEPP HV F+LATT+ +K+P TI+SR + K L +I Sbjct: 125 DEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNEIVE 184 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L++I + E I +E AL+++A+ A+G +RDA+S+ +Q G+ +++ Q +LG D Sbjct: 185 GLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKKITHQDTLDILGLFD 244 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++ + +E + + + +A + G + E LL + + + + + Sbjct: 245 ENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIFDSLINEK-------- 296 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 +++ T K+L Y+ ++R+ ++ +L + + Sbjct: 297 ----------------RSNLIHLMGTFNDILKDLKYSENKRLIFDVEILDFMHKNSTTSS 340 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 + P + Sbjct: 341 TISYDKETTPKRKQVATESVPKETQHP 367 >UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 Tax=Legionella RepID=Q5X1E1_LEGPA Length = 556 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 224/558 (40%), Positives = 305/558 (54%), Gaps = 11/558 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+TF+ +VGQEH+ AL N L+ R+HHAYLF+GTRGVGKTS+AR+LAK Sbjct: 1 MSYLALARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC CD C IEQGR++DLIEID AS+T+VEDTRDLLDN+QYAP GRF Sbjct: 61 ALNCEKGITSEPCLHCDTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLKTLEEPP HVKF+LATTDPQKLPVT+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQFNLKHLPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I QL+ IL EE + E +AL +LA+AA GS+RDALSL DQAI S + ++ V + Sbjct: 181 ELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETKLLASDVKIL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D AL L++A+ + ++ L + A G ++ +L EML LH+I + Q Sbjct: 241 LGHTQQDYALLLLQALAKQEAPTMLVLSQQIIAEGGNFQYVLDEMLNYLHQITIYQCLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ELA+ D QL+YQ + GR+E+ AP +G MT+LR F Sbjct: 301 NNPLISP--KAEIKELAKQFSAEDTQLFYQIGIKGREEMHLAPTLAIGFNMTMLRMYTFK 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + + + T P P +P+ + T ++A Q Sbjct: 359 PASHVTTPPLAFEQNNKTCSLIIDDNT-----PAQNPIGIEPIPVTKATGNIVAYHQTQS 413 Query: 421 RVQGATKAKKSEPAAATRA----RPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 K+ S + + + L A + ++ Sbjct: 414 LSTDDKKSANSGESMNCDWNDIIPQLKLSGLALNAIENAEFLGKKEREITLGVQKGHQSL 473 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T ++ +K L + + E ++ + L + Sbjct: 474 FTPTTINRIETALAGYYKSPVKITLNSQDAVHASPAQQKEKATQEKQEQAEAALHADPVF 533 Query: 537 EQVALNAWKEESDNAVCL 554 +Q+ E N++ L Sbjct: 534 QQLKQEFSAELVKNSIVL 551 >UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=Q4JSL3_CORJK Length = 967 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 240/524 (45%), Gaps = 8/524 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQ HV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQSHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + G +D+ E+DAA+ V+D R+L + YAPA R++V Sbjct: 62 VEGPTSTPCGKCESCVSLAPGGPGNLDVTELDAATHNGVDDMRELRERAFYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S FNALLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLAPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE +++ E + E L+ RA GS RD+LS+ DQ +A +G V+ A+L Sbjct: 182 MRGLLESVVSGEGVPVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYNRALALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ E + + A+++E G + ++L + +VQ P A Sbjct: 242 GVTDSTLIDRAVDALAEHDSAALFAVVDEVIDAGYDPRRFSEDLLDRFRDLLVVQAVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L N +RE A + + + G ++ A R+ +E+ R Sbjct: 302 FERGLVNAPEESRDVLREQAEKMGQATLTRCASLVNEGLAQMRGATAPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M + ++ AV T S+ + Sbjct: 362 LPAAGMTVEALAQRVEALEKGNGGAVGTGAGRAGSGAGGSGAGTRAGTGVRGSRAEMFAR 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + Q A + S +A P ++ Q ++ EA Sbjct: 422 RRKAAQDAAQQSASAQPEPAQAEPAQRVENAPEQNL-TAGQEPAAEQPPARSVEPPEAVA 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + Q+ T + ++ E E E A + A A R Sbjct: 481 ENSPAKETAQEVSPGTAQGTERGTEPETAQETAEESPAIAEARR 524 >UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Anaerococcus RepID=C2BD41_9FIRM Length = 560 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 225/467 (48%), Gaps = 4/467 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+ F V+GQ+ V+ L N + HAYLF+G RG GKTS A++ AK Sbjct: 1 MT-KALYRQYRPKVFEQVLGQDKVINVLKNQIKNKNFSHAYLFAGERGCGKTSAAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC +PC C+NCR IE+ +D++E+DAAS +++D R+L DNV Y PA ++ Sbjct: 60 AINCLNPKDGSPCLECENCRAIEEETSLDVVEMDAASNRRIDDIRNLRDNVIYPPANLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP+H+ F+LATT+ K+P TILSR +F +D Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRVQKFEFNKIDS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++++ E A+ L+ A+G++RDALS+ DQ ++ + + V + Sbjct: 180 SKIKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSILDQVLSFNKKEFMLKDVEFI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ ++ LV +++ + + + + + G ++ ++ + ++++S Sbjct: 240 LGSVGFEKINKLVTSIIVKDQRQSLNDLLDIRNDGKSNLDIVDSLINFYRDLMVLKVSGD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT---LLRAL 357 + + ++E I I L ++ + + + E+ L+ + Sbjct: 300 DMDFENQDRLNFLKEKVDEISLDRILTSLDVLNDYCIKINNSSNTDILSEVLVLRLIDTV 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + E V + ++ + T L E Sbjct: 360 DTNSLRSRVEKLERLDHSNIVDTINSIINVRLENFNPVTSKHDRTYDLEEIGPNKSDDVV 419 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 K+ ++ ++ + ++ V + Sbjct: 420 DNHISNVGEIVTKTSIGNDISEDKESSKSISIDPHLMHDIREMVVST 466 >UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8U6_TOLAT Length = 760 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 268/613 (43%), Positives = 338/613 (55%), Gaps = 8/613 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ F +V+GQ+HVL AL+N L GR+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPRNFHEVMGQQHVLQALSNALDQGRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C CREI+QG FVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 CLNCETGITSRPCGQCSACREIDQGNFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL Sbjct: 121 KIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALTR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL+ +L E + +EP AL LLA+AA+GS+RDALSL+DQAIA G+G + + V M Sbjct: 181 EQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSLSDQAIAYGNGLLQAETVQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ + +G +M I A +++ L VE+ LLHR AM QL Sbjct: 241 LGTLDHRQLYQILSLLAARDGAALMQQIGSLAELAPDYDQLHVELASLLHRTAMWQLLGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ LA IPP ++QLYYQ L GRKELP APD R +EMTLLR LAF Sbjct: 301 Q-TEPGADDTEELQLLAEQIPPEELQLYYQITLNGRKELPLAPDGRSALEMTLLRMLAFA 359 Query: 361 PRMPLP----EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 PR P +P++ ++ AP A T + A Sbjct: 360 PRAGRPAITEQPQLIHRNTAPAASFVATPARPDVIPAAVPVAPPVTASAAVEDLAMQAKL 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q Q A ++ +P + PV A ++ Sbjct: 420 MQEQAELMAQAEQEMQPRPLPVSPPVTEAPAPVAVIPAVAPATPAASGPEVNNSGVQDII 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R + +Q+ T + A+ + P ++A P Q P++ Sbjct: 480 RLRNQLRSRRQQAENQTESHVTPAVMPARIPANRGEIAPLPATAAPARTVAPQDVQPQVA 539 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 AL + L Q + ++ + + P + Sbjct: 540 GNRAL-SDDLPPWELPPLTAYQDQEAFISPVDSEQ--DNAAPSFKQRQSDRFTPSAPPVM 596 Query: 597 RTPLEWRQAIYEE 609 ++ + E Sbjct: 597 QSNPAPVSRLPET 609 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 88/269 (32%), Gaps = 1/269 (0%) Query: 376 APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 + Q A A + + A + V + Sbjct: 483 NQLRSRRQQAENQTESHVTPAVMPARIPANRGEIAPLPATAAPARTVAPQDVQPQVAGNR 542 Query: 436 ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPK 495 A A PV S + A + + TP Sbjct: 543 ALSDDLPPWELPPLTAYQDQEAFISPVDSEQDNAAPSFKQRQSDRFTPSAPPVMQSNPAP 602 Query: 496 ALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCL 554 + E + D WA V++L + V Q+A+ A + ++ L Sbjct: 603 VSRLPETDEDDDSVWRSNELLLRSSDQWAQTVAKLPVAGRVRQLAMQAVVTDQQADSWHL 662 Query: 555 HLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 +R+ RHL Q+LAEA+S + + + L + A+ P E Q +A Sbjct: 663 QIRNEARHLAQPRMVQELAEAISTILPTAINLQVEPVVQLALPCPAEIEQQERIRLQQEA 722 Query: 615 RESIIADNNIQTLRRFFDAELDEESIRPI 643 +++D N+Q L++ F A LD+ SI+P+ Sbjct: 723 ELLLLSDPNVQFLQQRFGATLDDGSIQPL 751 >UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococcales RepID=A9GQB3_SORC5 Length = 829 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 177/509 (34%), Positives = 248/509 (48%), Gaps = 11/509 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQ+F D+VGQEHV T LAN ++ R+ HA+LF+G RGVGKT+ AR+LAK Sbjct: 37 MSYVVLARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAK 96 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TATPC C C EI G VD+ EID AS V++ R L +++ Y PAR RF Sbjct: 97 ALNCVHGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDEVRKLQESLPYRPARDRF 156 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K++++DEVHMLS ++NA LKTLEEPP HVKF+ ATT+ K+PVTILSRC ++ K + Sbjct: 157 KIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRCQRYDFKLIGA 216 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA---SGDGQVSTQAV 237 + I +L +L++E I + AL LAR A GS+RDA+SL DQ IA + +++ + V Sbjct: 217 QAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEGV 276 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 + +LG D L A+V+ + + ++ E A G + + + L L + + Sbjct: 277 AKVLGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAKV 336 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 PA L + R LA D+ +Q ++ + R EM L+R Sbjct: 337 CEDPAPLLDLADEEVADTRALAARADADDLTRLHQGFSRAFDDIARSGQPRASFEMALVR 396 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P +P+ E P+ PQ+ P S AA Sbjct: 397 LARRPPLLPIDELLRRLGDLERRLNGGGGGGGGGGGAPERGPQR------PGAPSSGAAA 450 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 ++ A AA N A + AR +A APA A Sbjct: 451 PRRGAASAEAAPEDAHASGAAAAGAARANDAAAFHGAPAANGVARANGAAATGAPANGVA 510 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHE 504 + A + A + Sbjct: 511 FASGAAGAGGAGRPTGAAANGVAVTGAAA 539 Score = 66.2 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 6/228 (2%) Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A A+ A A A R S + S + AP Sbjct: 590 APGVHGAATSFASGGAAPAFAKAPPYASGAVAPAYRADSAPPPSPRGALYSVPQSAPQFV 649 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--QLS 531 ++ + A A A A + W A ++ ++ Sbjct: 650 APGSAPRSSAPPSAQGPAPASSAPPSAQNPAPASSAPPPPAMSAEDLATWRAVIAAVRVQ 709 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQ---RHLNNRGAQQKLAEALSMLKGSTVELTI 588 P L + A E + V L ++ ++ LA L G+ EL Sbjct: 710 RPALASVLEHAAVLELTPTRVALGYEANSFLSGQATEPASRDLLARVLGAHFGAPAELVF 769 Query: 589 V-EDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 A + + A + ++ A+ ++ + AEL Sbjct: 770 ETITRGSAGPSLAQVETAERKARVEAAKRAVADHPLVTAAIELLGAEL 817 >UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022F8_SOLUE Length = 568 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 244/471 (51%), Gaps = 2/471 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV+ARK+RPQ+FADV+ QEHV T L N ++ RI H Y+FSG RG GKT+IAR+LA+ L Sbjct: 2 YQVIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G TATPCGVC +C+EI +G VD+IEIDAAS + + R+L +NV+Y PAR R+K+ Sbjct: 62 NCVQGPTATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE H ++ +FNALLKT+EEPPE F+L TT+ K+P TI SRC F +++D ++ Sbjct: 122 FIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + ++ I +E I + AL +LA A EGS+RD+LS DQAIA +++ V A+LG Sbjct: 182 LVDRMSWICGQEGIEADAEALAVLAAAGEGSVRDSLSALDQAIACCGAKITAPEVRALLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + EA+ ++ +++E G + E+ + + +++ A Sbjct: 242 AFSLESLEKVTEALAAGESRMMLEVVDELERNGQNLQHFSRELSRYFRNLLVTRIAGADT 301 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AA ++ +A D+ Y Q L ++L ++ R +E+ L+R + Sbjct: 302 RLVAASAAQREKLGHIAGQFSEEDLSRYLQLSLDIFRDLQFSLQPRFHLEIGLVRLVQAG 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P+ E + P A + P + +P + L ++ Sbjct: 362 RLLPIEEALAGLTAAPPAPRAAQIPQAPPPRAAAPPQRPPAPLPRVGPSPFELDRIKKGI 421 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + + A A ++ + + + + A Sbjct: 422 GPSEPQSSGANALAPEPAAPAMSAGDPRQKLHAWFHEKGNAHLADAVENAA 472 Score = 58.1 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 4/142 (2%) Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 P + + + PE AA + R A + L NA + + Sbjct: 423 PSEPQSSGANALAPEPAAPAMSAGDPRQKLHAWFHEKGNAHLA-DAVENAAFTVTGGDLN 481 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQ 613 + S A EA+ + G + L I D A A + + Sbjct: 482 IVAPKSYGLYFRDKA---FEEAVREVFGRPLRLKITTGDASAAGPAPVSLSAPKSDAEDE 538 Query: 614 ARESIIADNNIQTLRRFFDAEL 635 +A+ +Q R F E+ Sbjct: 539 VTGRALANPEVQRFREIFGGEV 560 >UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alphaproteobacteria RepID=Q0BVJ3_GRABC Length = 686 Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 176/566 (31%), Positives = 267/566 (47%), Gaps = 11/566 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLAR++RP+ F D++GQ+ ++ L N +L R+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 48 YRVLARQYRPRHFDDLIGQDALVRTLRNAFALNRVAHAFMLTGVRGVGKTTTARIIARAL 107 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 108 NCTGADGQGGPTADPCGVCPNCTAILADRHPDVVEMDAASRTGVDDVREIIEATRFRPLQ 167 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R KV++IDEVHMLSR++FNALLKTLEEPP HV F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 168 ARTKVFIIDEVHMLSRNAFNALLKTLEEPPPHVTFIFATTELRKVPVTVLSRCQRFDLRR 227 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 +D E + IL +E ++ P+AL L+ARAA+GS+RD LSL DQAIA D +S Sbjct: 228 IDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLLDQAIAQNDPGIPISEA 287 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V+ MLG D L L+EA++ + +A+ + A ARG + +L ++L L+H + + Sbjct: 288 QVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHTLTRL 347 Query: 296 QLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P A R+R LA + + +Q LL G E+ APDRR EM L Sbjct: 348 KTIPHLRTAPGMAEAERLRGSALADRLAMPVLGRAWQMLLKGIAEVEAAPDRRAAAEMVL 407 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ-- 411 +R P E V P S+ A + Sbjct: 408 IRLCYVADLPPPAELVRRLTGAPGTQQPGHQGGGGVAPSTPSSSPTASSTGFRAIAGGIM 467 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + R A + A L + Sbjct: 468 SGGSGAATARQPHAMADSVPDVPVPVFHSFREVAQFVESRREAMLHAHLLHNVHLVRFAP 527 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 R ++ P ++ A + R ++++Q S Sbjct: 528 PVIELRLESNVPHTLPAQLAALLGEANGQRWTIALSSAPGEPTLAEQGRAAGESRLAQAS 587 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLR 557 +V + + + Sbjct: 588 NHPVVRAILNAFPGARLGTVIDSTVD 613 >UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPA0_9FIRM Length = 743 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 142/516 (27%), Positives = 228/516 (44%), Gaps = 14/516 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+R TF +V+ QEH+ T L N + G HAYLF+G+RG GKT+ A+L+AK + Sbjct: 2 HLALYRKYRSATFDEVISQEHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCG C++C+ I G D+IE+DAAS V+D R L D V YAP R+KV Sbjct: 62 NCLSPVDGNPCGECESCKAIAAG-CPDIIEMDAASNNGVDDVRALRDEVMYAPTVCRYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP HV F+LATT+ K+P TI SRC QF +DVE+ Sbjct: 121 YIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQFRFSRIDVEE 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +L I +E++ A +L++R ++G +RDA+SL DQ I+ + + V G Sbjct: 181 STKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD-IDEETVRTTAG 239 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +L + + E N + +++E + + LL E+L + ++ + + Sbjct: 240 IAGTEHLFTLAQCIHEQNAPEALKILDELHNQSKDLMLLLDELLSHFRNLCILSATNSDF 299 Query: 303 GNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + +I L P R+ EM L+R Sbjct: 300 SLIPAGSGTRNDLARQTKEFTLGEIMRCMDILQDCIARTPKTAKRKTVAEMCLIRLCTPR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + P+ ++ + +++ ++ Sbjct: 360 LDSDTSALSLRLEKLENRLDKLCDGEISIQPRTAVQTGESTEKHISAQSAKPVSVAGDRP 419 Query: 421 RVQGA----------TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + A T A + PV + ER A+ + ++ Sbjct: 420 QDIIADTLNRIENKITSADDKQKDVTAPTAPVQQSGTERNAADSKPDWLFEGTGGADENA 479 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKT 506 + Q P ++A Sbjct: 480 STGNEDAPPFDLDEPQASVAPPEPVPQEQAGNTSGN 515 >UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Tax=Alphaproteobacteria RepID=C6ABP2_BARGA Length = 646 Score = 331 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 173/643 (26%), Positives = 283/643 (44%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATPCGVCDN----CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P V D+ C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G V+ AV Sbjct: 189 IESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVNAIAV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPILSRNWQMLLKGLQEVNQTARPLQAAEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E + Q + ++ ++ Sbjct: 369 LAHTADLPTLDEALKKLTQEKTPLTLVKNSSHQESTNANNITKETMVEAHASSSVSNTLP 428 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + + S + + + T S Sbjct: 429 DQSDLKTSLKNQLDHSLQPENLVKNQTPDKINVQEVTETLENSQSIDLSEKS-------- 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + V Q E + PK L H+ + L Sbjct: 481 --ANLSRSVTQTTEKITQPKTLVINSLHDIVQLAEQH---------------NDAPFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 +++ + L L + ++K+++ TI + Sbjct: 524 IKEFVH--PVSFEAGHITLRLSENTPQFLAHDIEKKISQWTEK------RWTITFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESIAIQKTLFSNA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUL3_9ACTO Length = 1113 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 146/529 (27%), Positives = 227/529 (42%), Gaps = 10/529 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TFA+V+GQ+HV L N LS R++HAYLFSG RG GKT+ AR+LA+ +N Sbjct: 15 LALYRRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAYLFSGPRGCGKTTSARILARAIN 74 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G A PCGVC +C ++ +G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 75 CEKGPIAQPCGVCKSCTDLARGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVESRYK 134 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + + Sbjct: 135 IYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPK 194 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + + + E +A P AL L+ RA GS+RD+LS+ DQ I +G V+ + A+ Sbjct: 195 VLGDYMATLCEAEGVAIAPAALPLVVRAGAGSVRDSLSVLDQLIGGAGPEGVTYELAVAL 254 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + V+ + V + + G + + ++L L + ++ P Sbjct: 255 LGFTPDSLLDACVDGFAAHDSRAVFETVEKVIETGQDPKRFAEDLLRRLRDLVILSAVPN 314 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L R++ A I P ++ + G E+ A R+ +E+ + Sbjct: 315 AVASGLIEAAEDQGERLQTQAAGIGPAELTRAADIVAAGLLEMRGATAPRLQLELICAKV 374 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + V P+ A + P T +A Sbjct: 375 LLPGADDSTNGIQARLDRMERRLTIGVPA---GTPEVAPAARVMPATDGAAGTPAGGSAG 431 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 G + A + + + SA + A Sbjct: 432 GSSAGGVGGSAGAAVAGGAGSAGAVGGVGSAGGVGGAAGASGGGTGGSAGDAGAAAGSTG 491 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 +T + V + E W Sbjct: 492 GAAGSTNGGRAASVASARAGAGGRAESGAAGGAVNPPVGGDNRSGAWPD 540 >UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Tax=Cyanobacteria RepID=B1WS93_CYAA5 Length = 683 Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 182/644 (28%), Positives = 293/644 (45%), Gaps = 12/644 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L+N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC TA+PCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPPE V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +E + L I +E+I E AL L+A+ A G LRDA SL DQ G ++ + V Sbjct: 183 LEAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGG-ITPEKVWD 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + LSL++A+ N E V+ + RG E +L + + + + +P Sbjct: 242 LVGAVPERDLLSLLKAINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAP 301 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + A I Q L +L R+ +E+TLL L Sbjct: 302 TRSDLVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + + QS + + + S+ + Sbjct: 362 PDACIAEVIVQSSNIPTQTKNNNNESKPKALPQQKTQSNIVEKSSQDKIQPLSKPNQSVT 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + E + + + + + + +K+ Sbjct: 422 KTSETPINHDDIDLEGMWQLVLNKLPLLSSALIKQHGYLISYKQTVA-TVGIKSKQLLKA 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + P ++ +K L+ + + K +I+ Q + +LPK + Sbjct: 481 AQDKLPQIESAFQEVVGHKVKVNLQVGSSSPVTQKSHRSSIKPPSSYPQTNHSNLPKNEQ 540 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT-IVEDDNPAV 596 + N K +D + S + NN Q + + ++ + + + I D+ Sbjct: 541 TLNNNNHKNLNDEP---AITSKTDNSNNNHEQSEESSSIPEISTTQDNIDNIEVSDDKIQ 597 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + + + E + + I +NN LR + EL E S+ Sbjct: 598 KAAEQLAKFFKGEVINDYEDFIQKENNSSDLRD--NIELSENSL 639 >UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9N9_9ACTN Length = 742 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 154/628 (24%), Positives = 260/628 (41%), Gaps = 56/628 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RP F DVVGQ HV++ L N + +I HAYLF G RG GKT++ARL AK L Sbjct: 2 ESLYTKYRPAVFQDVVGQTHVVSTLQNAVLEHKIGHAYLFCGPRGTGKTTMARLFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C + PCGVC+ C+ I QG D+ E+DAASRT V++ R+ ++D V YAP +G +K+ Sbjct: 62 CTSPQNGLPCGVCETCKNIAQGIHPDVFELDAASRTGVDNVREEIIDRVNYAPLKGAYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TT+P K+ TILSR ++F + ++ Sbjct: 122 YIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSRVMRFDFHRIKSDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + EH + + AL+L+ A+G +RDALS +Q G G +S + V MLG Sbjct: 182 MFVHLQKVCTLEHFSADDEALKLIVEHAQGGMRDALSSLEQISVFGKGVISKRLVEDMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-- 300 +LV+++ + +R+ I +G E+ + + + + Sbjct: 242 ATSQTNLTALVQSLALRDTKRLFEEIASLCEQGKSIVQAACELAEYMRDVYLAKTLMEQH 301 Query: 301 ------ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 A ++ A+ I ++ + A + R+ E+ Sbjct: 302 LTLDDYAELFTCGVATSQLEADAQAFKNVRHIAYVLNVVVDMISHIKTAANPRLTFELYS 361 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R + ++ Q + L Sbjct: 362 CRMIHPVVTNSSSALIKRLEAVE---------------------TQLAQLTSRSPQQSGL 400 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 +A + ++ + +R +P+ A +R+ + +P+ ++ P + Sbjct: 401 SAAHAPVQHTARVQSASNTSVQQSRYQPLQQPAQQRVQQSIQQQAQQPIQQQAQQMPQQP 460 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL-SL 532 +A TP Q+ A L+ A ++ + W V +L + Sbjct: 461 VQPPIQAHTPQPAQQPSQA------------IAAPLSQGTADKSQLQRMWKQVVDKLMEV 508 Query: 533 PKLVEQVALNAWKEESDNA-----VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL- 586 + NA D + + + + L + ++ + G+ + Sbjct: 509 NPSRGSLLTNAEIRSDDGTRLVIELPIGSSFATKMLAEPSISALVQSCVAPIFGNRKLVY 568 Query: 587 ------TIVEDDNPAVRTPLEWRQAIYE 608 A +TP Sbjct: 569 AESSLQQTNIARAHAAQTPAPKPITAPA 596 >UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZS3_JONDD Length = 872 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 161/653 (24%), Positives = 247/653 (37%), Gaps = 56/653 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF+D++GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDTFSDMIGQEHVTGPLMQALRSNRVNHAYLFSGPRGCGKTTSARVLAR 59 Query: 61 GLNC----ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYA 114 LNC TPCG C +C+E+ +G +D++EIDAAS V+D R+L + ++ Sbjct: 60 ILNCAENSPENPRDTPCGQCPSCQELARGGAGSLDVVEIDAASHGGVDDARELRERATFS 119 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P+R R+K++++DE HM++ FNALLK +EEPP ++KF+ ATT+P K+ TI SR + Sbjct: 120 PSRDRYKIFILDEAHMVTAQGFNALLKIVEEPPPYLKFIFATTEPDKVIGTIRSRTHHYP 179 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVS 233 K + + + + + +E IA L L+ RA GS+RD LS+ DQ IA G +S Sbjct: 180 FKLVAPDTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQGSAIS 239 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + A+LG +V+A+ +G + +I E G E + ++L + Sbjct: 240 YEHAVALLGYTPATLLDDVVDALAAHDGAALFRVIEEIINTGHEPRRFVEDLLERFRDLL 299 Query: 294 MVQLSPA----ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +V LSP L A RM A+ + + T E+ A R+ + Sbjct: 300 IVALSPDGARAVLSALPADQYERMNHQAQQLGAGHLTYAADTTNTALTEMSGATSPRLHL 359 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E+ R L P V Sbjct: 360 ELLCARLLLPTASDSAAALAARIDKLERGHGPTRAAVQPTSPAADGRDNDEAPVARTARP 419 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV------------ 457 + + + +A P + A V Sbjct: 420 VAKRPDSTRTTPARPNPAPAQPAGTSAPALNPAPEPDPQVAAPVNSPTAPPAVSSAASAA 479 Query: 458 ----------------------------QARPVPSALEKAPAKKEAYRWKATTPVMQQKE 489 A E + + PV Sbjct: 480 APTATTSDDVALAAAASWAAAASLVQDSAPSTPQRAHENNARNEPQREQQPEQPVASDPA 539 Query: 490 VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESD 549 A P L A + + + +Q A A + Sbjct: 540 PGAHPVPTAGVEHSVSGASLTKGAVESAWVSALDTVRQQSMPAWAMAQQHA--AVHGVTG 597 Query: 550 NAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + V + S RG LA+ALS G+ VE+ + + T Sbjct: 598 STVHVTFPSPGLAAGFAGRGGDALLAQALSTAVGAPVEVAVHVAGSEPAITSA 650 >UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2L1L6_9FIRM Length = 526 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 135/417 (32%), Positives = 213/417 (51%), Gaps = 3/417 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWR + F D+VGQ+ + + N +S RI HAYLF GTRG GKTS+A++LA+ Sbjct: 1 MSYTALYRKWRSRDFDDLVGQDAITRSFKNQVSHDRIGHAYLFCGTRGTGKTSMAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I +++ E+DAAS KV+D R + + V+Y P R+ Sbjct: 61 AVNCLNPKDGNPCNECANCKAILSNTSINVYEMDAASNNKVDDIRLIREQVEYPPVGMRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ + NA LKTLEEPPE+ F+LATT+P LP+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLTESAHNAFLKTLEEPPEYAIFILATTEPNALPITILSRCQRYDFRRIPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + I +L HI+ EEHIA E A+ +AR +GS+RDA+SL DQ + ++S + Sbjct: 181 DIIADRLRHIVEEEHIAIEEEAIHYIARMGDGSMRDAVSLLDQCASYDFQREISYEDTLK 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D ++ ++ E + + M L++E +G E ++L I + + Sbjct: 241 ILGAVDTAAFSQMIASLREKDIAKAMTLVSEVLEQGKELSQYTSDLLNYYRNIMLAKTVE 300 Query: 300 --AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A + ++ ++ +I + L ++ +A +R+ +E TL++ Sbjct: 301 KIDGLMDLSAENKKQLLSDGESLSMEEILRGIRLLTELLQQYRFARQKRVLLESTLVKLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + P + + P E Sbjct: 361 HPEMEGKTDALLQRLRELEEKMEKGSFLPVERTAFSKEENGDVPEAMEKEVVLPKAQ 417 >UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 Tax=Bacillus cereus RepID=C2TXN4_BACCE Length = 541 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 134/385 (34%), Positives = 211/385 (54%), Gaps = 3/385 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ Sbjct: 6 MSNYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIG 65 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 KG+NC PC C NC +I +F D++E DAAS VE+ R + D V AP G Sbjct: 66 KGVNCLAPLSNGEPCQKCANCGDINNNKFADILEFDAASNNGVEEIRQIRDQVHLAPVTG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDPQK+P TI+SRC QF + + Sbjct: 126 KYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFEFRNI 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + +L+ I +++ I AL L+++ AEG LR+ALS+ DQ IA V+ + V+ Sbjct: 186 PLQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNNVTIEDVA 245 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + L+ + E + + + R + + L +++G + + LS Sbjct: 246 TVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILER-KQADFFLSDLIGYYRDLMIFNLS 304 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +A LA IP + I + L + ++ + +E+ L++ L Sbjct: 305 QKTDMFKVAIYNNAFINLAERIPLSKIPSILEELTTVQYKIKSSVYAATLIEIALVKILQ 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAV 383 + + +P + + Sbjct: 365 MEQEISMNQPNIKNNENEASSELNQ 389 >UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 Tax=Aquificaceae RepID=B4UA58_HYDS0 Length = 421 Score = 330 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 130/408 (31%), Positives = 203/408 (49%), Gaps = 9/408 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY ARK+RP+TF +++GQE T L N +IHHAY+F+G +G GKT+ AR+ AK Sbjct: 1 MSYIPFARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ IE+G FVDLIE+DAAS +++ R + + Y P +G++ Sbjct: 61 VLNCLNPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVREGASYLPMQGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKT+EEPP + F+L TT+ K+ TI SRC + Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I+ L I N+E+I + AL +L+ A+ S+RDA SL DQA G+ +V+ V +M Sbjct: 181 ENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D +E ++E++ + + ++N +G + + I Sbjct: 241 FGPVDKASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKAFAIGE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + P ++ LY + ++ Y D + +E+T+L+A Sbjct: 301 AEEEFYKKMLEK---------PLEVFLYLEDIINQGFSAMYQKDPILALEITVLKASLIK 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 +P+ E + + E Sbjct: 352 DFVPISELLKESLDLPTKSAEKKTPNEPTEDIKAENSKDQEYPEEVEK 399 >UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F0Z1_ACIC5 Length = 698 Score = 330 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 189/694 (27%), Positives = 289/694 (41%), Gaps = 64/694 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARK+RPQ F+DV GQEHV L N L+ GRI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MAYQVLARKYRPQRFSDVAGQEHVTRTLLNALAQGRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCETG----------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 LNC T T PCGVC++C EI VD++EIDAA+ +++ R+L + Sbjct: 61 ALNCRTPIGSTTGSPQRPTPEPCGVCESCEEIRLSNAVDVLEIDAATNRGIDEIRELREA 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +Y P+R R+K+Y++DE H ++ +FNALLKTLEEPP+HV F++ATT+P+ +P TI SRC Sbjct: 121 ARYRPSRDRYKIYILDEAHQITDAAFNALLKTLEEPPDHVVFMMATTEPENIPQTIRSRC 180 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 F A+ + I QL I +E+I E AL LLA A +GS+RDALS+ DQAIAS Sbjct: 181 QHFSFHAVKFDDILAQLRAIATQENIVAEDAALALLAEAGDGSMRDALSIMDQAIASARL 240 Query: 231 Q-----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + + +A+ ++G++ + L+EA+ E V+ +N G L + Sbjct: 241 ENGQPHLDAEAIRELMGSVPNTVFERLLEAISENQSAAVLEELNRLLNAGNSPVQLARQF 300 Query: 286 LGLLHRIAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + L M ++ L R+ A D+ + Q +L EL Y Sbjct: 301 VRYLRNTIMAKIGGEQTDLLQISPDERARVGRSALLFSEEDLTRFLQIMLRTFDELNYRQ 360 Query: 344 DRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 ++R +E+ L++ + +P+ E A + + S AP V Sbjct: 361 EQRFHLELGLIKLVHLQRLLPVEEFLSQLPPGTGAARSISSATSSPAASRPSPAATAPPV 420 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 AA + A S A P P Sbjct: 421 RATPPPRPAPAAPASTPEPSRPAFSPFEADRQRKITSEDTAPAPVAAPSAPSIEAATPAP 480 Query: 464 SALEK--------------------------------------APAKKEAYRWKATTPVM 485 S A ++ A+ V Sbjct: 481 SVTTPSVNSVPVTSLPIAPPAEPVPAPMAAQPAPAAPSIPEPVAASRPLTPLEAASRAVE 540 Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL--PKLVEQVALNA 543 + + + E LA+ AAEA A S L + + Sbjct: 541 AAPAKPSMRVGVAEPERTEGALALASAPAAEADLDHIAQAVCSALEREGHGTASVLLSSG 600 Query: 544 WKEESDNAVC--LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + + + ++ L +K+ + G+T +L V + + Sbjct: 601 NWTQQGDTIQVEVAIKRMMLSLTMNAEAEKICKNAMRSIGATQKLVFVPGE-GNRAAGSK 659 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 AI + A E + +Q + F E+ Sbjct: 660 PAIAITGSIQSAALE----NPLVQKAKELFRGEI 689 >UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=Rothia mucilaginosa RepID=D2NPN5_9MICC Length = 972 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 162/609 (26%), Positives = 263/609 (43%), Gaps = 25/609 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 30 ALYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGKTTSARILARCLNC 89 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVCD+CRE+ + G +D+IE+DAAS V+ RDL + AP R R+K+ Sbjct: 90 AQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPVRDRYKI 149 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 150 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSRTHHYPFRLVPPEV 209 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDGQVSTQAVSAM 240 + L+ + ++E +A EP LQL+ RA GS+RD+LS+ DQ + AS + A+ Sbjct: 210 LLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQLMAGASSQNGIEYDRAVAL 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++EA+ + + ++ A G + + ++L L + +V+ P Sbjct: 270 LGYTHAQLLDEVIEALGAKDAPTLFGAVSRVVATGQDPRRFVEDLLERLRDLIVVKAVPQ 329 Query: 301 ALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A G R+ + A+ + ++ + T+ + A + ++ + Sbjct: 330 AAGQILQGVPQDQLERLAQQAQALGERELTVAAGTVNETLNGMTGAANPQL-------QL 382 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 R+ LP E A + + + +A P A Sbjct: 383 ELLCARLLLPAVEGSAGGAEVAALASRLQVLERRVASGAAGSAGSAGSAPAQGGMSAARA 442 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A K + S P + + ++ +S A P+ A Sbjct: 443 AGMAAAGLAPKTQVSAPQTSQEQAAPQQSGSQQGSSQQASAGAPPLAGAPLSVAPLAPTA 502 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAA---------KLAAEAIERDPWAAQV 527 + A + A + A A + W A + Sbjct: 503 QESAAGAPLAGNTPAAPHAPAAPNVPASPAAAAAGTPSAPLKLDPNDPLAAVQGNWRAIL 562 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 +++S+P EQ+ + + + +G +L +S V + Sbjct: 563 NRMSVPGAAEQLMKVRPARMDGATLYVSADIATLR-AVKGFVPELTARVSEFLRRQVTIH 621 Query: 588 IVEDDNPAV 596 Sbjct: 622 AQVAKPGEQ 630 >UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 Tax=Nautilia profundicola AmH RepID=B9L692_NAUPA Length = 493 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 137/395 (34%), Positives = 222/395 (56%), Gaps = 27/395 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L RI HAYLFSG RG GKT+ AR+ AK L C Sbjct: 2 VLALKYRPKRFEEIIGQDAIVKTLVNSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + G T+ PC C+NC + R +D+IE+DAAS K+ED R+L+++ +Y P+ G++K+++ Sbjct: 62 DHGPTSNPCEECENCIMANESRHIDIIEMDAASNRKIEDIRELIEHTKYKPSVGKYKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIKNGIIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 + L IL E++ + AL+L+ +AA+GS+RD+L+L DQAIA G++ +V MLG + Sbjct: 182 NYLIKILAIENVEFDEEALRLIIKAAKGSVRDSLTLLDQAIAFSKGKIDLDSVVDMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + +A+ ++ +R+ ++ E + E+++ E++ L Sbjct: 242 NPEIINEIFDAVKNSDKKRIKEIVGEIKD--YDIESIIDEVIIYLKDAL----------- 288 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 ++P +Q ++ + ++ + Y D + + LR Sbjct: 289 -----------FEGSLPLITVQRFFNIVADVKELIKYNTDNEFVLTLMFLRMSEAVKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + + +SF P + P + Q +P+ Sbjct: 338 IDDLI---KSFEQKIDLNTYKPKEEPVKIQKSPED 369 >UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Tax=Bacteria RepID=C3J7N6_9PORP Length = 594 Score = 328 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 173/624 (27%), Positives = 268/624 (42%), Gaps = 40/624 (6%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RP +F ++GQE V L + + HAYLF G RGVGKTS AR+ Sbjct: 1 MSEKFVVSARKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIF 60 Query: 59 AKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NC + + CG CD+CR + R ++ E+DAAS D R L++ V P Sbjct: 61 ARAINCASPLASGEACGECDSCRAFAEQRSFNVFEMDAASNNSANDIRQLIEEVNIPPQV 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+Y+IDEVHMLS +FNA LKTLEEPPE+V F++ATT+ QK+ TILSRC F K Sbjct: 121 GRYKIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQVFDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I QL HI E I E +AL+L+AR A+G +RDALS+ D+ + DG+VS Sbjct: 181 IPSDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYTDGEVSYSRT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 L LDDD V+ +V + + L++E RG + +++ + L + + Sbjct: 241 LESLNILDDDYYFRFVDLLVHNDYASTLLLLDELIMRGFDPRTIVLGLTDFLRNLLLAFD 300 Query: 298 SPAALGNDMAAIELR-MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + +LA+ + L+ KE + +R+ VEMTLL Sbjct: 301 PQTLPLLHLTKETEASYNQLAQASGRGFLYQAIAKLMECLKEYRNSNAKRLLVEMTLLSL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + T PT P + A P P Sbjct: 361 TSLAQERV------------SASHTPNQRPTPAATPPSAPSPVAAPRPQPIAAPAPARPS 408 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + + + P + A R + R P P+A A K Sbjct: 409 APPTPRQTGASTEAPQSIDLPKPPPTASMAAPRPVAPAPRPAVAPSPTATSAAAPK---- 464 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 Q++ T ++ A L L + + + + ++ Sbjct: 465 -------APTQEKRSFTETEMQIAWNAYAEEHLQKNLFLKNAFNEVLPKLHNGTEIEAIM 517 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 + E ++ +LRS+ + + +++ TI E+ + Sbjct: 518 FNMLQVNAVERIKGSLLSYLRSALHNSDITLQVRQIE-------------TIEEERSQRS 564 Query: 597 RTPLEWRQAIYEEKLAQARESIIA 620 TPLE +++ E + I A Sbjct: 565 ITPLELFRSLAAEPQTPLHQFIQA 588 >UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJ98_9BACT Length = 539 Score = 328 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 175/421 (41%), Positives = 255/421 (60%), Gaps = 9/421 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP +F++VVGQEHVL AL N +S ++H AY+FSGTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKYRPSSFSEVVGQEHVLKALENSISQNKLHQAYIFSGTRGVGKTTIARVFSK 60 Query: 61 GLNCETGITAT--PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + C C C EI+ GR ++ +E+DAASRT V+D R+LLD+VQY PA Sbjct: 61 CLNCMQADSPQVISCDKCSACEEIKIGRHMEFLEVDAASRTGVDDMRELLDSVQYKPANA 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+YLIDEVHMLS+ SFNALLKTLEEPP HV FL+ATT+ +K+P T+LSRCLQ +LK + Sbjct: 121 RFKIYLIDEVHMLSKSSFNALLKTLEEPPPHVMFLMATTEVEKVPKTVLSRCLQLNLKVI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +I+ L+ +L+ E I ++ ++ L+A +A+GS+RD L+L DQAIA G+G ++ V Sbjct: 181 PEAKIQLHLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLLDQAIAHGNGSLNADDVK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 A+LGT+D + LVE +V NG+ +++ +E+E +L ++ + H+I++ Sbjct: 241 ALLGTIDQSYIIELVEHVVAGNGDGAYNALHKITELNVEYEQVLKILISVFHKISL---- 296 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ LA + P QL+Y+ L + P + +E+ +LR LA Sbjct: 297 ---HQQLHNNDSESIQRLAENLDPQITQLHYEIALNSLGKFHVHPHPKQALELCILRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + P +++ + V QP S + V E T + Sbjct: 354 FQPMGDVVTPRQEKKNLKISSTPQVEIKKTDTEQPASEVIHSKIVSENEQTITKESNPSS 413 Query: 419 L 419 L Sbjct: 414 L 414 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 64/524 (12%), Positives = 155/524 (29%), Gaps = 21/524 (4%) Query: 135 SFNALLKTLEEPPEHVKF----LLATTDPQKLPVTILSRCLQFHLKALD---VEQIRHQL 187 +LK LE K + + T + T ++R L + + I Sbjct: 20 GQEHVLKALENSISQNKLHQAYIFSGTR--GVGKTTIARVFSKCLNCMQADSPQVISCDK 77 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 E I L++ A A+ + D L D + + L Sbjct: 78 CSACEEIKIGRHMEFLEVDA-ASRTGVDDMRELLDSVQYKPANARFKIYLIDEVHMLSKS 136 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH---RIAMVQLSPAALGN 304 +L++ + E VM L+ + L + L + + L Sbjct: 137 SFNALLKTLEE-PPPHVMFLMATTEVEKVPKTVLSRCLQLNLKVIPEAKIQLHLKSLLDL 195 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM--GVEMTLLRALAFHPR 362 + + L ++ L + + + T+ ++ Sbjct: 196 ESIEYDEESIALIADSAQGSVRDGLTLLDQAIAHGNGSLNADDVKALLGTIDQSYIIELV 255 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + A T + + + + ++ + + ++ + + Sbjct: 256 EHVVAGNGDGAYNALHKITELNVEYEQVLKILISVFHKISLHQQLHNNDSESIQRLAENL 315 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 E A + + + ++ + P P +++ ++T Sbjct: 316 DPQITQLHYEIALNSLGKFHVHPHPKQALELCILRMLAFQPMGDVVTPRQEKKNLKISST 375 Query: 483 PVMQQKEVVATPKALKKALEH---EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 P ++ K+ A + E + + +++ W + L L V QV Sbjct: 376 PQVEIKKTDTEQPASEVIHSKIVSENEQTITKESNPSSLDLRSWNSMFDSLELSMFVRQV 435 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + +S G + + +++S G + L I D + +P Sbjct: 436 FSEFEFISFVDKTLVLKKSDDLINPTEGLKTEFIDSISARLGYKISLVIESGDV--IASP 493 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + EE+L + S++ + ++ + FD ++ +ESI + Sbjct: 494 AVMHEQEAEEQLNLDKSSLLENPVLKDILDSFDGKIIDESISKV 537 >UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0W5_SYNWW Length = 499 Score = 328 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 137/397 (34%), Positives = 214/397 (53%), Gaps = 3/397 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRP+ FA+VVGQE +TAL N + G++ HAYLFSG RG GKTSIA+++AK Sbjct: 1 MAYLALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C++I G F+D+IEIDAAS +++ RDL + V+ PA+G+ Sbjct: 61 AVNCENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKN 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKT+EEPP+ V F+LATT+ K+P TI SRC ++ + L Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 +I +L + + I EP AL LLAR A G +RDALS+ DQ + +S Q V Sbjct: 181 AEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSYKGNNSISKQDVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G +DD L+ A++ + ++ ++ A ++G E + L E L + ++ Sbjct: 241 VMGLVDDAFMAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAREASMFLRDFLLYLVAG 300 Query: 300 AALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +A E + I ++ + ++ +L ++ ++ +E+ + Sbjct: 301 KEADLVVAGEESQAFFEQQKSQINMQNLLRALRIMMDTADKLRFSEGQKYLLEIAFMEIA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 +P + + Q Sbjct: 361 TLFSEEKSAQPSFLEEKKPKKKADPRAKASSNEAQDA 397 Score = 43.1 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 29/156 (18%) Query: 488 KEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV--EQVALNAWK 545 E + + + + +K + AK ++ + W ++ + K+ + Sbjct: 364 SEEKSAQPSFLEEKKPKKKADPRAKASSNEAQDALWNKILAAVKEKKIPTHALLVQGKLL 423 Query: 546 EESDNAVCLHLRSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 D+ V + + + RG ++ L +AL + G +E + D+ Sbjct: 424 GIKDDTVYIAYKKGYKFHKERMEERGNREILGQALKEIMGRDIESQFIFLDDDQ------ 477 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 D ++ FF EL E Sbjct: 478 -----------------YNDIIVKKALEFFGEELVE 496 >UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 Tax=Anaerococcus RepID=C7RH57_ANAPD Length = 626 Score = 327 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 202/378 (53%), Gaps = 1/378 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+TF +V+GQ+ V+ L N + HAY+F+G RG GKT+ A++ AK Sbjct: 1 MA-KALYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + +PC C+NC+ I+ +D+IE+DAAS +++D R+L DNV Y P + ++ Sbjct: 60 AINCLHPVDGSPCLECENCKAIDDESTIDIIEMDAASNRRIDDIRNLKDNVIYPPNKLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP H+ F+LATT+ +P TILSR F ++ Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSRAQNFEFNKIEK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++ I E A+ L+ R A+G++RDALS+ DQ ++ V + Sbjct: 180 GKIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSILDQVLSYDTKSYKLADVENL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L ++ N ++ ++ I + ++ ++ I + ++S Sbjct: 240 LGVVDFYDIDKLTNSIFSFNQKKALSYIFSLRESNKSNKDIIDSLINYFRDIMLYKMSED 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D +++ A I + L ++ + + + VE+ ++R + Sbjct: 300 PDLFDNEERFDFIKKRAGEIEIDRLLDLLDILNEYSAKIRLSDNTDLIVELMVIRLINSK 359 Query: 361 PRMPLPEPEVPRQSFAPV 378 L ++ Sbjct: 360 DVKSLDSRIRALEANNEK 377 >UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Tax=Finegoldia magna RepID=B0S0K6_FINM2 Length = 537 Score = 327 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 118/418 (28%), Positives = 220/418 (52%), Gaps = 1/418 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + RK+RP TF V GQ+H+ L N + I HAY+FSG+RG GKTS A++ A+ +N Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C+NC+ + +D++E+DAAS +++D R+L D V Y P + ++KVY Sbjct: 62 CLDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK +EEPP+H+ F+LATT+ K+P TILSRC ++ K ++ + I Sbjct: 122 IIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +++ILN+ + + A++L+A A+G++RDALS+ DQ ++ ++ Q ++ +LG Sbjct: 182 SDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGI 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D+ LV ++++ + V+ + + E ++ E+L + + + + Sbjct: 242 VDNKGIFKLVNSIIKKDATDVLGNLYTI-SHNKPVENVMDELLNHFRNLLLSKNGLEKIR 300 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + I I ++ +K+L A +++ +E+ ++R + + Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRLIDYIDYD 360 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 L + + + + + + + +S+ A + +L Sbjct: 361 DLIARVNTLEDKLNNIEQNGIKINSTKELSEFDEKIDKKIEISQKSSKKEAKQDELSD 418 >UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRL5_9CORY Length = 829 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 151/643 (23%), Positives = 259/643 (40%), Gaps = 49/643 (7%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E + RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTPVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AL + + + E + + + G +++ R+ +E+ + R Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTP------------------------------ 386 L+ P+ +P + AP AP V Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPAAQPQAQQPVQPQQPAQPQ 421 Query: 387 -----TQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 + P Q+ P + RQ + Q + ++ A + Sbjct: 422 SQQPVQRPAQPQAQQPTQSQQQSAPSAPVEEKQPRQYQEYGQPSQPVQRPAQPQAQQPVQ 481 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 + + + + + + V + ++ + Sbjct: 482 PQAQQPVQPQQQSAPSAPVEEKQPRQYQEYGQPSQPEQEEHEVPEPRQQWEAGHDEQPQQ 541 Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVS---QLSLPKLVEQVALNA-WKEESDNAVCLHLR 557 E R W ++ + + A + D + L + Sbjct: 542 VESAPQEPETSTVDVETVRAKWVDILNYISREKKNTTARILLRGATLLDVRDGTLYLGIL 601 Query: 558 SS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + LN+ + +A+ +++ + V + T Sbjct: 602 TGAIANRLNDAKHNADIVDAVMAETNASLAVECVLGNKIPAST 644 >UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobacteria RepID=Q31PS7_SYNE7 Length = 652 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 180/647 (27%), Positives = 287/647 (44%), Gaps = 22/647 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQE + L+ L+ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC+ TA+PCG C+ CR I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RFKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L+ I +E I EP A+ L+A+ A+G LRDA SL DQ V+ +AV Sbjct: 181 PLQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPP-PVTPEAVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG + + Q L L+EA+ + E ++ LI + RG E +L + + + + + Sbjct: 240 DLLGAVPERQLLQLLEAIAANDPEALLTLIRQLLDRGREPLTVLQNLTAFSRDLLIARTA 299 Query: 299 PAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + A P I Q L ++ R+ +E+ LL Sbjct: 300 PQRRDLTTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVALLG- 358 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P P P APV + VP + S+P V +P + Sbjct: 359 --LLPSAQAPVTTAPPAIAAPVTRPVSIPAAVVPAETPSSPAAVAPVAIPVAPAVTTTPP 416 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A + E + + + L R+ A+ P + Sbjct: 417 EVPAIAAAAPEPLNLEELWQRVLINIASRGTQMLLQQQGRLLRCQAGQAVVSVPPNWLSI 476 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKT--PELAAKLAAEAIERDPWAAQVSQLSLPK 534 + + + V + T ++ IE A + Sbjct: 477 VQGKRNLLAEAFQTVLGQAIAVELESSSGTDPNPVSLPPPPVVIEMPRSPASPAVTPRSA 536 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + A ++ + + + + + ++ + ++ + P Sbjct: 537 PPSEPIAAAPRQPAIATIAPPPVAVAPPVPPPAPSPPIPQSKPVAIATSPSKSPEVVPAP 596 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQT---LRRFFDAELDEE 638 + TP + + D ++ L +FF+ E+ + Sbjct: 597 QLETPPAALRPLA---------DWELDPGLKAARSLAQFFNGEVVSD 634 >UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8P5_CAPOD Length = 569 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 148/638 (23%), Positives = 256/638 (40%), Gaps = 74/638 (11%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M++ V ARK+RPQ+F DVVGQ+ + L N + + A LF+G RGVGKT+ AR+LA Sbjct: 1 MNHFIVSARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +N +T E ++ E+DAAS V+D R L++ V+ P G+ Sbjct: 61 KKINEQTSGVED-----------ENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGK 109 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + Sbjct: 110 YKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRIT 169 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + IR L++I ++ I E ALQ++A+ A+G++RDALS+ D+ ++ +++ QA S Sbjct: 170 INDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSE 229 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-S 298 +L LD + + + +++ ++ N++ A+G + + + + + + + Sbjct: 230 ILNVLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFDGNHFIAGLASHFRDLMVCKNPT 289 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +L + + E + + + + ++R+ VE+ L++ + Sbjct: 290 TISLMEVGEETQKKYAEQSVRATVPFLMEAIAIANDCDLKYRTSKNQRLLVEVALMQLAS 349 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + A V T P AP + TT+ L Sbjct: 350 LTYEGDKKKNDGRFIIPAYVFNGQSHTTEVR--INSQTPIVAPPINYTNTTTATLNPNIP 407 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + T+A + + V P E + W Sbjct: 408 IISKTERTEA-------VSNFSIKSVHLKTEHQRNFKEVVIDPNTLPRESFSEETFNQFW 460 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + K LK Sbjct: 461 ERYIDELLVKGERIQASILKI--------------------------------------- 481 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS-TVELTIVEDDNPAVR 597 A + L + S+ + + KL L + + + I ++ Sbjct: 482 ----AILRLEGTTIHLEVSSNTAKNDIVQMEHKLLNYLHKSLQNYDLTIEISVNE----- 532 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 E + I + + + + +Q RR F+ L Sbjct: 533 ---EIAKRIVVTPEDKYEKLLEENPILQEFRRAFELNL 567 >UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 Tax=Bifidobacterium RepID=B7GT66_BIFLI Length = 923 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 266/629 (42%), Gaps = 30/629 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVINHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L L E + AP + M P +A + + Sbjct: 355 ---RLELLAARLLAGSESGFATAAPAPVASGMPPAAASSTTSAASGAGASGFAGSSRGGF 411 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A + + + A+ N + L S P+ A Sbjct: 412 AGASHGGFSGAARNQQVAAPQSTASHESVGGNGPVNGLVSDRPAGSPSVQPAVATAAANA 471 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + Q A + + + E + RD + Sbjct: 472 GWGAPAASPAAPAQPVASPAASDNRSIDEKWDAAVAALPETIREYVSRDKVPTVKFGPNR 531 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------STVE 585 L +++ K S +A L + +S + A + +A+ G S V Sbjct: 532 KGLP-CLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPSAVA 585 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 ++ +P + + + +A+A Sbjct: 586 ANGERVESVKRMSPEQLAKVKQQIAMAKA 614 >UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=Streptococcaceae RepID=Q1JL73_STRPC Length = 561 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 142/460 (30%), Positives = 215/460 (46%), Gaps = 12/460 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEP E+V F+LATT+ K+P TILSR +F KA+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 IR L +L++E +A+E AL L+AR AEG +RDALS+ DQA++ D QV+ + Sbjct: 182 IREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G++ V + + + +A + G ++L L + +V+ Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGDN 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA--- 358 ++ I + E+ R+ EM ++ Sbjct: 302 QRQSAVFDTNL------SLSIDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQLAKEEG 355 Query: 359 --FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + S P P+ T+ + Sbjct: 356 VALPSGLSSDVTTEVEGLKRELNQLKQALAQLQASPSPSHAPVKPAQAKPKLTTYKIDRV 415 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 + L+ ++ + + + N L+ +++ Sbjct: 416 KILKIMEETVQDSQQSRQYLDALKTAWNEILDSISAQDRA 455 >UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SL11_9FIRM Length = 540 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 113/368 (30%), Positives = 204/368 (55%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + R++RP+ F VVGQ H++ L N + G + HAYLFSG RG GKTS A++ A+ +N Sbjct: 5 QAIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C I PC C+NC+ I + + ++++E+DAAS +++D R+L + V Y P ++KVY Sbjct: 65 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK LEEPP+H+ F+LATT+ KLP TI+SRC +F K ++ I Sbjct: 125 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 + ++LN ++ E + L++ + G++RDALSL DQ +A+G +++ + ++ LG Sbjct: 185 VENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGL 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + L ++++ ++ + G ++++++ I +V+ L Sbjct: 245 VNLNMLFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFRNIILVKSIKKELT 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R E + ++ + LL ++ + + E+ +++ +F + Sbjct: 305 TLNDVEYKRYLEHSNKFEMDELIFILENLLDVEDKMKKSDMQNALAELLIIKICSFKRKK 364 Query: 364 PLPEPEVP 371 E + Sbjct: 365 SEMEKRIE 372 >UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 Tax=Verrucomicrobia RepID=B1ZQU6_OPITP Length = 395 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 147/402 (36%), Positives = 210/402 (52%), Gaps = 12/402 (2%) Query: 1 MS---YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS YQV+ARKWRPQTF DVVGQ+HV+ L N ++ RI HAYLF G RG GKTS AR+ Sbjct: 1 MSSTGYQVIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARI 60 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 AK LNC G A C+ I +G +D+IEID AS V+ RDL D VQYAPA+ Sbjct: 61 FAKALNCTDGPKADFDPNDPACKAIAEGSHLDVIEIDGASNNGVDQVRDLRDTVQYAPAQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATTDPQK+ TI+SRC +F LK Sbjct: 121 GRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQRFDLKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I +L+ I E I AL+ +AR A+G +RDA S+ DQ I+ +S V Sbjct: 181 IPPDLIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCGTDISEADV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G + ++ L A+ + +++A++++ G + LL ++ + + + Sbjct: 241 LDVYGLVSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQAFVRAALLDAI 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + L G + ++ E+TLL+A+ Sbjct: 301 AQGGRSAKLGGEP---------MTTEQLTRMLDALREGEGAVKLGLAEKINFEVTLLKAV 351 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + + A P ++ Sbjct: 352 DASRSRAIDSLIKELAALAEETPATEAGAQGSGDPDLQNEKK 393 >UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium diphtheriae RepID=Q6NJY2_CORDI Length = 707 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 145/526 (27%), Positives = 232/526 (44%), Gaps = 7/526 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + +D+ E+DAAS V+D R+L D YAPA R+++ Sbjct: 62 VEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNRSVDDMRELRDRAMYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSRTHHYPFRLLTPQS 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + EH+A E L+ RA GS RD LS+ DQ IA +G + +L Sbjct: 182 MRGLLERTVASEHVAVEDSVYPLVIRAGGGSPRDTLSILDQLIAGAGPDGLDYNLARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + ++A+ + + ++++A G++ ++L + ++Q P A Sbjct: 242 GATDDTLIDTTIDALAGNDNAALFQVVDDAIEAGLDPRRFATDLLDRFRDLMVLQSVPDA 301 Query: 302 LGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L +R+ A +P + + G + L A R+ +E+ + L Sbjct: 302 LTLGLVDAPTDRGDILRDQATHLPAGEAARLAALVNDGLRGLKGATSPRLLLEILCAKML 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + AP + + P + Sbjct: 362 LPSAQPAATATAPAAAAPAPAPTEIPAKYERRSVRLAREAAARKNAEAPAPEPAPEPKPE 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + A + N+ L S + R + + A+R Sbjct: 422 PKPEPRDGFATIQEKWATISDVIFKANSVAGILLSQATLLGLRDDSTLVIGHNTGALAHR 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + L +E + A +E + W Sbjct: 482 INDPQHAGSIVTAIKQETDLDVTIECVVGTDPKAAGFSEPENKKVW 527 >UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ66_ALIAD Length = 586 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 160/571 (28%), Positives = 255/571 (44%), Gaps = 15/571 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQTF D+VGQ HV L N L G++ HAYLF G RG GKTS A+LLAK Sbjct: 1 MAYQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAK 60 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C+ C I++G VD+ EIDAAS V++ RDL D+V Y P + Sbjct: 61 AVNCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAK 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY++DEVHML+ +FNALLKTLEEPP HV F+LATT+P +LP TI+SRC +F + + Sbjct: 121 KKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRIA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E I +L + + I AL LA AA+G LRDAL+L +QA A G+G++ V+ Sbjct: 181 PEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTVAD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G++D ++LV + + M + A G + ++ ++L ++ + +V+LS Sbjct: 241 VVGSVDIGSLVALVGDLAGRSFLSAMDRLGRWYASGKDASRIVHDLLQVVRDLFIVKLSQ 300 Query: 300 AALGNDMAAIELRMRELART--IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + ++ + +A + + + L +L Y + R+ +E L+ Sbjct: 301 SPDALAGKPVDP-YQPVASRDDVTVDWLLAAMRKLGELYTQLRYVEEPRLALEAVLMGLA 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A +P + A P A +V Sbjct: 360 AERRSKDDVDPAGSIEPARTGAAARREGRPPEQPAQADADLPVQASAPAPPAPEVAQGDP 419 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + ++ + R + V ++++ + A+ Sbjct: 420 DAREAVTRSAPARAAAHRKRETLARLYRDRDEALEARLREMWQDVLASVKAKRVQTHAWL 479 Query: 478 WKATTPVMQQKE-----------VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + A + A+E L + AI + W Sbjct: 480 LHGEVALATPRAVVLSFKSRIHREAVMKPADRAAIEAALAEALGQPVHLFAILQADWEEF 539 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLR 557 + L+ E + + S + V L + Sbjct: 540 AASLAPALAEEAGSREDGEAPSTDVVQLAID 570 >UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPV7_LAWIP Length = 574 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 173/652 (26%), Positives = 278/652 (42%), Gaps = 90/652 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LA ++RPQ+F +VVGQE V L+ + ++ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKQVSLAIRYRPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC C+ C+ I +G VD++EID AS V+D R L +++ YAP GR+ Sbjct: 61 ALNCQQAPTAEPCNTCEQCKRITKGIHVDVVEIDGASNRGVDDARRLRESIAYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R SFNALLKTLEEPP F+ ATT+P K PVTI+SRC F LK L Sbjct: 121 KVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ + L H+L +E+I +E A+QL+AR A GS+RD++SL Q + +G ++ V + Sbjct: 181 EELIYNLIHVLKQENICYEDNAIQLIARRASGSIRDSMSLLGQTLMFSNGILTENVVRNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L+ A + N E V+ L +G++ L E L + +++ Sbjct: 241 LGLAEQEFYEKLLRAFKDQNYEEVVKLNQILLEKGVDLGFFLREFATLWRNLFLLRKVSK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 N + + + +L + + +M +E Sbjct: 301 LDANMLGMLPDEIPR-------------LTSLANLFEPIYLHAAWQMVLE---------- 337 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + ++ PVA + + P S Q + + +TS Sbjct: 338 -----NQRQILMSLEPPVALELLFLNLTLLPHLVSLEQISNGLAALSSTS---------- 382 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 E + D + V SA ++ + Sbjct: 383 ------------------------LETEISNKLRDNSMKKDVISASTESESISNTKFQNE 418 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLVEQV 539 V++ + K +K + + ++ E W + + Sbjct: 419 YQEVVEGDLQFISVKDVKSKRDTISSSMNEGEIIEEPT----WEGFLQYCSKNGSTINTY 474 Query: 540 ALNAWKEE-SDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 LN N + + + S L + +KL E + G + + Sbjct: 475 FLNKLTGIFQQNTLVITVDSQFLYEKLISDK-LEKLYELVHNYAGEKYTVQL-------- 525 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES------IRP 642 + + ++ I++ IQ L++ FDAEL + I+P Sbjct: 526 -----IEPKNTFKLETEIKKDIVSHPVIQILQQTFDAELLRCTPTTNLHIKP 572 >UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NU34_9BACE Length = 596 Score = 325 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 166/599 (27%), Positives = 245/599 (40%), Gaps = 50/599 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP++F DVVGQ H+ L ++ GR+ HAYLF+GTRG GKT+ A++LA+ + Sbjct: 2 YQALYRKWRPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C IE G +D++E+DAAS V+ R L D Y PA R +V Sbjct: 62 NCEHPVDGNPCNQCPSCLGIENGSILDVLELDAASNNGVDQVRALRDEAVYTPAAVRKRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS +FNALLK LEEPPEH+ F+LATT+ K+P TI SRC QF K + Sbjct: 122 YIVDEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILPGD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++ +E I LLAR A+G LRDALSL DQ + G + V + LG Sbjct: 182 IARRLSYVAEQEGIGLTSEGAALLARLADGGLRDALSLLDQCVNPS-GTIGEAEVLSALG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-- 300 + + +L+E + + + + G + +LL E+ L + + + +P Sbjct: 241 LAGNLETAALMEQIAKRETAGALETLARLYGAGKDVGSLLNELSSLARDLLIRKTAPQSG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A E +R L R + P + L +L + +RR E+ L+R Sbjct: 301 AALLTGGYDETTLRRLDRLLAPARLAQILSQLQATSADLSRSGNRRTDAELCLIRLCDET 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + V P Sbjct: 361 LDPSPAGLNARLTRLEEQLAGGGIPTQPVRGAPVQQTAAPAAQQQ--------------- 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 P A AR + E + E+ A+ + Sbjct: 406 ------------PKQAAPARSEDRPPWEEERPPLPEEPGERINQVAEEEAARPAVQPQRT 453 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS---LPKLVE 537 PV Q P A + + W V+ L Sbjct: 454 AEPVRQGAPQQQAPVQNAPAAQAFPAGDF-------------WPELVASLKGRIPMGEYT 500 Query: 538 QVALNAWKE--ESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 +A A + + + L+ S +N G +A+A S G + +T+ Sbjct: 501 FLANPAMVQGRAENGMLTLYTDSDFTRTMINKPGILSVVAQAASARLGGQMRVTVTVGQ 559 >UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DVK2_BIFA0 Length = 850 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 162/636 (25%), Positives = 267/636 (41%), Gaps = 53/636 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L + L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMHALDENKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R Sbjct: 60 CINCVKGPTSHPCGECDSCRDLATGGPGSIDVVEIDAASHNSVDDARELRERAGFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEH+ F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHLMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LEH+ +EHI EP L+L+ RA GS+RD LS+ DQ + D ++ + Sbjct: 180 PPEIMTPYLEHVCEQEHIETEPGVLRLVTRAGGGSVRDTLSVLDQLMGGCVDNDITYDST 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D ++A++E NG ++ +I + G + + ++L + ++ L Sbjct: 240 VALLGFTPDALLGEAIDAIIEQNGAKLYGIIQKVIVAGFDARRFVEDLLVRTRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + ++ + A + + + + + A RM Sbjct: 300 GGDEAEHVLSDDAEAEDMSDLHRQADALGLQQLTAMAEIMDDTLGHMAGAASPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + + A A + AP+ Sbjct: 355 -------------RLELLAAKLLAGRASGFAAEAPALAGAGARGSSAAPSATQGSARGGF 401 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + A++ GAT + A P + A+ ++P A P+ Sbjct: 402 VDAQRPSGFNDGATAPQSGHDTPTQAAAPTATPQAIQAATTEHDAGSQP--QAASNVPSI 459 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 E + T V A P ++ + E+ P + + ++ + W + L Sbjct: 460 PEDIQRNGTVDERWDAIVAALPLDVRAYINRERVPRVMLAMDRKSGRQRLWIKFETPLDK 519 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV--- 589 AL KE + + + G V L Sbjct: 520 ----YAFALAVSKEPIGGT--------------TSVVSIVRTQVHNVFGPDVALAPTEKM 561 Query: 590 ---EDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 E P + P E Q I + L Q+ + I+A Sbjct: 562 ANGESAPPLSKLPPEEAQRIKAKLLQQSLQGIVAHP 597 >UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVG4_9BACT Length = 576 Score = 325 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 257/564 (45%), Gaps = 4/564 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ + LAR +RP+TF+D++GQE V+ +L GLS G + AYLFSG RGVGKT++AR+LA Sbjct: 1 MAKFASLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NC++G TATPC C +C EI +GR D+ E+D AS T V+D R L +++ YAP R Sbjct: 61 KAINCQSGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYAPLTSR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++ +IDEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P T+LSRC F + L Sbjct: 121 SRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQHFRFRLLT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V QI ++ H+ E+I+ P ++ARAAEGSLRDALSL DQ + +G ++ V+ Sbjct: 181 VSQISDRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQLLRTGGESLTPADVAD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D ++ A++ + + A G++ A + + I L Sbjct: 241 LLGVTDHALEEKMLAAILLGDLSATLRTARTALDTGVDPRAQVRSLARRFRDILHSTLDG 300 Query: 300 AALGNDMAAIELRMRELARTIPPT---DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +L + + + PP ++ L+ G +L +P + E+ L R Sbjct: 301 TSLDSPIYGWIPESVQALPLDPPPNIFFLEQALSVLVKGEDDLRRSPQPAITFELLLARL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 +PLPE +P++V + T E Sbjct: 361 CHLREVLPLPEILAKIGVAGATSPSSVRSLGPKTHNSSPPTPLPTTEVPTEVFPSPPEES 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + A + R AL RL + +E+ + Sbjct: 421 SLQQAMPQEIPAPVDDGPLDLRIPADWPRALSRLPHEMAALLESVRTRRIEQNTLYLDTG 480 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T + ++ +A +L E + S + Sbjct: 481 NSFFNTRIQASRDPLAKALSLAIKSPEPLRIETPTLSRKGNSTGQITSEIASSGDKRERR 540 Query: 537 EQVALNAWKEESDNAVCLHLRSSQ 560 L + + L +RS Q Sbjct: 541 NLPPLVSDAVSLFGSEVLDVRSPQ 564 >UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PCQ5_9LACO Length = 605 Score = 324 bits (829), Expect = 7e-87, Method: Composition-based stats. Identities = 151/591 (25%), Positives = 270/591 (45%), Gaps = 17/591 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R+WRP+TF VVGQ + L N + +I HA+LFSG RG GKTS A++ AK Sbjct: 23 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK 82 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC ++G D+IEIDAAS V++ R + D V+YAP +G + Sbjct: 83 AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEHV F+LATT+ QK+P TI+SR +++ K + Sbjct: 143 KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ +++ IL++E IA++ ++LQ++A+ A+G +RD+LS+ DQ ++ +++ Q A+ Sbjct: 203 DQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAI 262 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G D + +L ++ + + + E G + +L E++ L+ + + Sbjct: 263 TGYADQVKIEALFLDLLNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT 322 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++R I + Q L Y +++ +++ ++R Sbjct: 323 TVTFLSANYLEQLR----LISTQVLSQTLQLANEALNSLRYTNQQQIPLKVFVVRI---- 374 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + T + + + S++L + Sbjct: 375 ---STQDVNATVSQTDAAEIKQLQTKVEQLSLQVAELLKKANSSAIAKPSEILTEIKDKV 431 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R A + ++ A + + + + ++ + + + Sbjct: 432 RPTKAVNQNVATLKKKKTGLQLSTEANLKKVNAVLSQATKQDLNTIKDVWQQDMSSLLEV 491 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + + + L+ + +A E + +L+ K + Sbjct: 492 SQRALLEVLEPVAASPTQVVLKCKYEFWFERAMADENFISQL-ENNLEKLTQHKYQIVLV 550 Query: 541 -LNAWKEESDNAV---CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 N+W V HL +Q+ L + ++ + +A L G V + Sbjct: 551 SENSWTTIRQEYVKKYKEHLIIAQKELASNPNEEVIKKA-KSLFGDLVNVK 600 >UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=Prochlorococcus marinus RepID=A2BZ44_PROM5 Length = 595 Score = 324 bits (829), Expect = 7e-87, Method: Composition-based stats. Identities = 158/639 (24%), Positives = 274/639 (42%), Gaps = 55/639 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ +K+RP ++VGQE + L L +I AYLF+G RG GKTS AR+ AK L Sbjct: 5 HKPFHQKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSL 64 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TA PCG C+ C++I G +D+IEIDAAS T V++ R+++D ++ P + R+ Sbjct: 65 NCLSCEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARW 124 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS + NALLKT+EEPPE V F+LATT+P+++ TI SRC +F K + Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISS 184 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I H L I N+E I E +AL+L+A+ + G +RDA SL DQ +G V+T+ V + Sbjct: 185 NTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNG-VTTKNVQNL 243 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ ++L+ A++ E ++ N+ G E +LV +L + + + L+ Sbjct: 244 LGEVSENDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKTLNNN 303 Query: 301 ALGNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + ++ I I ++ L ++ + + ++ +E+ L + Sbjct: 304 YSDIFYTSIDFQNELNKFSKNISKMRIIDWHNKLKNIDYQIKTSDNPKLWLEVHLTSLI- 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + V + + A + + L Q Sbjct: 363 ---ENKIEDNIVNNGQSNKETLNQKVINKDELINKTIISKNANQTESEDINKKELINNQD 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 +Q +SE + + + + P + A + Sbjct: 420 IQPNYENANQTESEDIN-----------------------KKELINNQDIQPNYEHANQT 456 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + + L + W + + Sbjct: 457 DFLKEKWELILSKLELPSTRMLLSQQAELASIDSNEVLIALSPNWENMIKSRKI------ 510 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + NA K+ + V L+ S + ++NN Q + + + I + T Sbjct: 511 IIENAVKKVCGDKVKLNFSSKKININNTAKSQ--EKIIKKSTSNR---EIQNTNFQNSNT 565 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P+E Q + D+N + L FF+ E+ + Sbjct: 566 PIEKPQKEFY------------DDNSKNLANFFNGEIID 592 >UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H8_DESRD Length = 538 Score = 324 bits (829), Expect = 8e-87, Method: Composition-based stats. Identities = 160/533 (30%), Positives = 256/533 (48%), Gaps = 7/533 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L +RPQTF+ VVGQ+ V T L+ + ++ AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSPGPLTHTYRPQTFSTVVGQKQVRTILSRAAAENQVAPAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G + PC C +CREI QG VD++EID AS T V+ R L ++V YAP R+ Sbjct: 61 AINCEQGPASEPCNQCRHCREITQGTGVDVVEIDGASHTGVDHVRKLKEDVGYAPLSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS+ +FNALLKTLEEPP F++ATT+P + P TI+SRC + L Sbjct: 121 KVIIIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHIFQRLRQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L +L E I + A++L+AR GS+RDA+SL Q +A G ++ + V + Sbjct: 181 EELTDHLRRVLENEAIEMDAEAVRLIARKGAGSVRDAMSLLAQVLALGQRRLESAHVREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + LSL EA+ + + + ++ +G++ L E+ + +++ S Sbjct: 241 LGLAGQETLLSLFEALRDQDCIAINTVLRSVLDQGLDLAFFLRELTATWRNLFLLKQSGE 300 Query: 301 ---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +L + + A + I +Q L G++ + + + + +E+ LL Sbjct: 301 GALSLLDLPQEEAREWLQWAEAFSASHIHACWQMTLEGQRRVLTSVEPALALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PL +P AP + P + AP P++ Q A Sbjct: 361 FMQDLVPLGQPGSGSSGPAPGSAGGTSGRRASGAAPAGSQTAAPQ--KPQSPVQSAAESS 418 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + +G + + P N + R+Q + A A +K+ Sbjct: 419 EEKTWEGFVRYCQQAVEGEAAKLPGLNHVQGEIDGGCLRIQCQSRVQAERFAVTEKKNLL 478 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + + A T L ++ ++ +A +QL Sbjct: 479 HDLACQYFETDMELEVHQPKESAPPDRNT--LKKEVLEHPAIQEALSAFQAQL 529 Score = 46.9 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 53/455 (11%), Positives = 113/455 (24%), Gaps = 42/455 (9%) Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ A S R + + D+A + + A+ L + Sbjct: 107 LKEDVGYAPLSCRYKVIIIDEAHMLS--KAAFNALLKTLEEPPPQAIFIMATTEPHRFPA 164 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 +++ + + E+ L R+ +M A +R+ Sbjct: 165 TIISRCQHHIFQRLRQ----EELTDHLRRVL------ENEAIEMDAEAVRLIARKGAGSV 214 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGV-----EMTLLRALAFHPRMPLPEPEVPRQSFAP 377 D +L + + R + E L A + + V R Sbjct: 215 RDAMSLLAQVLALGQRRLESAHVREVLGLAGQETLLSLFEALRDQDCIAINTVLRSVLDQ 274 Query: 378 V---APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPA 434 A + L + + Q A+ + Sbjct: 275 GLDLAFFLRELTATWRNLFLLKQSGEGALSLLDLPQEEAREWLQWAEAFSASHI-HACWQ 333 Query: 435 AATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT- 493 + ++E ++ + L A A+ Sbjct: 334 MTLEGQRRVLTSVEPALALELLLLNLAFMQDLVPLGQPGSGSSGPAPGSAGGTSGRRASG 393 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--QLSLPKLVEQV--ALNAWKEESD 549 + P+ + AAE+ E W V Q ++ ++ + E Sbjct: 394 AAPAGSQTAAPQKPQSPVQSAAESSEEKTWEGFVRYCQQAVEGEAAKLPGLNHVQGEIDG 453 Query: 550 NAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 + + +S + L + + +EL + + P E Sbjct: 454 GCLRIQCQSRVQAERFAVTEKKNLLHDLACQYFETDMELEVHQ--------PKESAPPDR 505 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 ++ ++ IQ F A+L E +RP Sbjct: 506 NTL----KKEVLEHPAIQEALSAFQAQLVE--VRP 534 >UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Q2_9FIRM Length = 645 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 206/361 (57%), Gaps = 4/361 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL R++RP+ F +++GQ++++ L N + I HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYTVLYREFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C C C +C +I G D++EIDAAS +++ RDL + V Y P GR+ Sbjct: 61 SICCLNNKEGEACNECASCNDINIGDGADIVEIDAASNRGIDEIRDLKEKVNYMPNFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H+ F+ ATT+P K+ TILSRC +F +D Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSRCQRFDFNRIDS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E + + L IL+++ I +E AL+L+A EG+LRDALSL D+AI+ D +++ + Sbjct: 181 EVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAISVVKDNKITKETADD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR--IAMVQL 297 +LG + D++ L + ++E + ++ + +++ +G E +++ +++ IA+ Sbjct: 241 ILGLISDEEIFLLAKGILENDVDKSLNAVHDFLNKGREVGSIITQLMEYYSNKIIAVNVK 300 Query: 298 SPAALGNDMAAIELRMRE-LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + N + ++E I +L + ++ + + ++ Sbjct: 301 EPEKIINKSSTYISSLKESFNGLEDSKRISDILYSLAKLKNDMRFFSEPEFLFTAKIINL 360 Query: 357 L 357 Sbjct: 361 C 361 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 131/397 (32%), Positives = 210/397 (52%), Gaps = 18/397 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL RK+RP+TF++VV Q+HV A+ + + H Y+F+G RG GKT++AR+LAK LN Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C CREI++G F+D+IE+DAAS +++ R + D V Y P G++KVY Sbjct: 62 CENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP HV F+LATT+ +K+P TI+SRC F + + E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + E I + AL +A+ A G LRDAL++ +Q +G++ + V LG Sbjct: 182 EKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + V A+ + +RV ++++ G ++E L+ E + L Sbjct: 242 IPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQE-------------AVEDLV 288 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 D+ + + DI + LL +E+ +A ++R+ ++ Sbjct: 289 EDLERERGVYQ-----VSANDIVQVSRQLLNLLREIKFAEEKRLVCKVGSAYIATRFSTT 343 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + E +V ++ V + + Sbjct: 344 NVQENDVREKNDNSNVQQKEEKKESVKAKEEKQEDSE 380 >UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUW8_HERA2 Length = 575 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 175/638 (27%), Positives = 275/638 (43%), Gaps = 72/638 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RKWR QTF D+VGQ H++ AL N ++ RI HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSSQALYRKWRSQTFDDLVGQSHIVQALRNAIAANRIGHAYLFTGPRGVGKTSAARILSK 60 Query: 61 GLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NCE PCG C CR I +GR VD+IE+DAAS T V+D R++++ VQ+ P + R Sbjct: 61 AVNCEQSDPRLRPCGECSTCRAIAEGRAVDVIEMDAASHTSVDDAREIIEKVQFRPTQFR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 KKVYVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSRCQRFVFNRHT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + LE + EE + EP + +ARAA GS+RDA+S+ DQ + G+ Q+ V + Sbjct: 181 IANTIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSILDQLMGYGEPQIPLTRVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +LV A + +++IN A +G + +++ L + +++ Sbjct: 241 LLGATASREVETLVAAFAAEDVAAALSVINTIADQGADLRQFTRDVVSYLRGLMLLKSGG 300 Query: 300 AALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA D+ + M+ ++ + I + + +L P ++ +EM ++ AL Sbjct: 301 AADLLDVGHDVLATMQSHSQQLALAAILAWLKIFSGLDHQLRTTPYGQLPLEMAVVEALV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P R + AP+ P P P + Sbjct: 361 VPVPAAVAAPSPVRGTVAPITRPNPAVAR-------------PAEPAPVQRQTPTPSVVT 407 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + V+ + + A A + + A +A + Sbjct: 408 PRPVEQPVVEQPPQAEPTPVPVAAVAAQPMPEAEQHIVLAESEILLAEVEAVWLQVIEDL 467 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 K P +Q P AL+ TP + + Sbjct: 468 KPYNPRLQAVLKSCEPLALEDNTLVIGTPSPFHTKQLDDQTQ------------------ 509 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 ++ + + L+ + + + Sbjct: 510 ------------------------------RRLIEDLLAKAVNRQMFVR---GEEANRD- 535 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + RE I+ D+ ++ R FDA + Sbjct: 536 ---QQNRARDARRQ--REEIMKDHVVKAARNIFDARIV 568 >UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=cellular organisms RepID=A9BDA2_PROM4 Length = 578 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 149/522 (28%), Positives = 242/522 (46%), Gaps = 20/522 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y L K+RPQ+F D+VGQ+ + + L L RI AYLF G RG GKTS AR+L Sbjct: 1 MSNTYAPLHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC T PC C+ C+ I G +D+IEIDAAS T V++ RDL++ ++AP Sbjct: 61 ARSLNCLNVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ+L TI+SRC +F Sbjct: 121 IARWKIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFS 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +++ + + L+ I N+E I E A+ L+AR ++G LRDA S+ DQ + ++ A Sbjct: 181 QIELNDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQL-SLLPQPITVNA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + +++ L L A+ + + ++ + E G + +L + +L + + Sbjct: 240 VLDLLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVLKN 299 Query: 297 LSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P L + ++ E+A + P + + L L ++ R Sbjct: 300 AAPDYPDLCSISQESHQKLSEIASLVEPERLLQWQSHLKGSENNLRHSSQPR-------- 351 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + L P + A Q + P + P P ++ +A Sbjct: 352 ---LWLEVLLLGLLNEPFNTKLETQVNAARANISYTSQERHEPSENPNKNNPNLENKNVA 408 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + Q + + + + + + + ++ Q + E Sbjct: 409 DKHQSSLEKNVNVKETNSGLSEAWEQVLARI--DLPSTRMLLSQQAQLVGLSENKAEINV 466 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 A W + A +AL + + + + E Sbjct: 467 AENWLGMIESRKSLLEKAINEALGQERKLILNSQSRLSVNTE 508 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 128/437 (29%), Positives = 211/437 (48%), Gaps = 24/437 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F D+VGQEH+ L N L L +I+HAY+F+G RG GKT+ AR+LAK LN Sbjct: 2 EALYRKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C +C+ I+ G +D+IE+DAAS +++ R + + V + P G++KVY Sbjct: 62 CEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+R +FNALLKTLEEPP+H+ F+LATT+P+K+P TI+SRC + + E I Sbjct: 122 IIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + +E AL+ +A+ AEG LRDALS +Q I G+V+ + V LG Sbjct: 182 ISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGGEVTEKIVDEALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ +EA + + E + ++N+ +++ + +++ Sbjct: 242 ISEETIEKFIEATLNNDRELIEKILNDIYIERGDFDTFINQLIE---------------- 285 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + E M +LA + + ++L A R+ R + + Sbjct: 286 KTLEKKEDNMLKLASDF-----YNVLKEIRFAEEKLLIA---RLMFLSIANRYHGKYSNI 337 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 Q+ + +P + +Q Sbjct: 338 SNVASTARSSQDNVGTKQLSKNIQDEKITEQNENTLPQSEKMPSAQLNESVKNEDIQVDL 397 Query: 424 GATKAKKSEPAAATRAR 440 + ++ + Sbjct: 398 KREEKEEKHLSQNVSQA 414 >UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MHU5_BRAFD Length = 1122 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 161/625 (25%), Positives = 256/625 (40%), Gaps = 37/625 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP++FA+V+GQ+HV T L L GRI HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPESFAEVIGQDHVTTPLRRALRAGRIGHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R R+KV Sbjct: 64 VEGPTDVPCGQCDSCRDLANGGSGSLDVVEIDAASHGGVDDARELRERASFAPVRDRYKV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + + Sbjct: 124 FIIDEAHMVTSAGFNALLKLVEEPPEHVKFVFATTEPDKVIGTIRSRTHHYPFRLIPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + E + + L+ RA GS RD++S+ DQ +A +GD + A+L Sbjct: 184 LGPYLEEVCAAEQVQVGEGVMPLVVRAGGGSARDSMSVLDQLMAGAGDDGLDFPTAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + A+ E + + + A G E + ++L + + ++ P Sbjct: 244 GFTDTALLDRAITAVAERDAASLYGAVEHVLATGHEPRRFVEDLLERMRDLIVLSAVPDK 303 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + MR A P D+ L + + A R+ +E+ R + Sbjct: 304 GTDLLPQVPADELEAMRGQAALFAPADLSLCGDLVHETLSTMSGATSPRLHLELLAARLV 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R L + P + AP P + E + Sbjct: 364 LRDERAALAAADGPAPAADRRAPAPAGPGAPARPAEAQGAPGGASGAREEARRIAQEKVE 423 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ +G E A P +A + + P AP + Sbjct: 424 AARQARGGRGQAAPEQRDRQGAPPAASAPAAQAPAPQAPAAQHSAPEPAAPAPEQPAPAG 483 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA----------------------- 514 Q A A + P A Sbjct: 484 PAQPAGPGQAPGSAAPAPAAHAPGSAAQPPAGDASAPPASGPPASAPAAPGPSAPAPAAG 543 Query: 515 --AEAIERDPWAAQVSQLSLPKLVEQVALNA---WKEESDNAVCLHLRSS--QRHLNNRG 567 R W+A + +L + ++ + + + R+ + Sbjct: 544 GLDADEVRGHWSAILDELQQIRRPSWALISQNGTVNGAHGSTLVIGFRTEGLVNAFHRGT 603 Query: 568 AQQKLAEALSMLKGSTVELTIVEDD 592 A Q LA+A+ + + V + V + Sbjct: 604 AAQNLADAVRRIMHTEVTIEAVVGE 628 >UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3S6_9BACT Length = 615 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 170/644 (26%), Positives = 269/644 (41%), Gaps = 39/644 (6%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARKWRPQ F DVVGQ+HV+ L N + R HAYLF G RGVGKT++AR+ A Sbjct: 1 MSEYQVIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAYLFVGPRGVGKTTLARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NC PC C++CR I + R +D++E+DAASR D R+L ++V P GR Sbjct: 61 KAMNCLDPQDGEPCCRCESCRAIAEERSLDVMEVDAASRNTTGDMRELAEDVLTQPVGGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ ++N LLKT+EEPP HVKF+ ATT+ ++ TI+SRC +F L + Sbjct: 121 YKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISRCQRFDLLPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQ 235 I +L I + E + A+ +ARAAEG +RDA SL DQ IA D ++ + Sbjct: 181 TRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFSQGDDTPITGE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V ++ G D +L+ AM+ V+++++ A +G E L ++L + + + Sbjct: 241 QVLSLFGLTDRTDLDALMVAMLRNAPGEVVSIVSRLARKGKNLETLFDDLLEAMRAVQLC 300 Query: 296 QLSPAALGNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P R R+LA P IQ+ + + + L A ++++ +E L Sbjct: 301 AILPDPSDLIDEGEEAVARYRKLAALAKPDTIQILLEIIAPVGRVLHDALNKQVYLETIL 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L+++ + + + + + A + P P PE + Sbjct: 361 LKSMREAHAVRIDDLLARLNQLRTAGELKFIDQLPPVVKRTEAAEIEPLKPQPEAPAPAP 420 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + + A P A + + A+V P A E A Sbjct: 421 APAARATPPPAPQEPAPEPAATEVAPPPAAPAPMPQPAAVESAPAPVPPEPAPEPQAAPM 480 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P + ++ A + + + E A Q Sbjct: 481 PVTAEPVPAPQLPEQAPAAPEPESEPVEPIRPLSAPSPEPPEEEPASPAPPAVERQPVPE 540 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 E A + L + Sbjct: 541 PAEEPEAEPEPAPPNQMPEVLA--------------------------------AQVTEE 568 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P ++ +A E + D I + F + + Sbjct: 569 SDLDAPGRKKRHSIANDNPKALEEAVNDPFIHEVVDLFGGSVVD 612 >UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q609A7_METCA Length = 547 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 227/421 (53%), Positives = 285/421 (67%), Gaps = 2/421 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ LARKWRP F +VVGQEHV+ AL + L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MLYQALARKWRPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE A PCG C CRE+++GRF+DLIE+DAASRTKVEDTRDLLDNVQYAP +GR+ Sbjct: 61 ALNCEDRQGANPCGRCLICREVDEGRFIDLIEVDAASRTKVEDTRDLLDNVQYAPNQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQK+PVT+LSRCLQF+LK L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRCLQFNLKRLTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR Q+ IL E I EP A + LARAA+GS+RD LSL DQAIA G+++ VSAM Sbjct: 181 EQIRAQMAQILASESIDFEPAATKALARAAQGSMRDGLSLLDQAIAHCGGRLTNTGVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ + +EA+ E+ + ++A+ A +++ ++ ++L +LH+IA+ Q +P Sbjct: 241 LGTVSREPVYGALEALAESRADELLAVSATLAEFSPDYQDVVQQLLAILHQIAIAQFAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D R+ LAR + P D QLYYQ L G+K+L APD R G EM LLR LAF Sbjct: 301 AIRQD--DEAERVLTLARCLTPEDTQLYYQIALQGQKDLQLAPDPRDGFEMLLLRMLAFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + + AP T + P + + +QAP E +S + Sbjct: 359 PHSAEAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQAPPPAAAEASSSGASPWTTSD 418 Query: 421 R 421 Sbjct: 419 A 419 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 2/181 (1%) Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 A + A +A + ++ A + + + W Sbjct: 363 EAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQAPPPAAAEASSSGASPWTTSDALNW 422 Query: 524 AAQVSQLSLPKLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 + + L + Q+A + +++A L L Q ++ L AL L G Sbjct: 423 PRMIEAMRLAGMTRQLASHCVLRTLTEHACELALDPRQAQIHTPTVTSNLETALQKLLGR 482 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 ++LTI ++ TP Q E+ +A I D + L+ F A++ S RP Sbjct: 483 PIKLTIR-CESLDAETPAAADQRAQIERQREAELEIENDATVHALKDMFGAQIVAGSTRP 541 Query: 643 I 643 + Sbjct: 542 L 542 >UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinobacteria (class) RepID=B0RIG8_CLAMS Length = 837 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 153/612 (25%), Positives = 242/612 (39%), Gaps = 51/612 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+ FA+++GQ V L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 11 ALYRRYRPENFAELIGQTQVTDPLRTALRTNRVNHAYLFSGPRGCGKTTSARILARCLNC 70 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ + +D++EIDAAS V+D RD+ + +APAR R+K+ Sbjct: 71 AEGPTDTPCGVCPSCVELSRDGSGSLDVVEIDAASHNGVDDARDIRERAVFAPARDRYKI 130 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + Q Sbjct: 131 FILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSRTHHYPFRLVPPAQ 190 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + +EH+ EE + P L L+ RA GS+RD LSL DQ IA + + V + A+L Sbjct: 191 MLDYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQLIAGSEDESVEYERAVALL 250 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--- 298 G +++A+ + A ++ G + + ++L L + +V + Sbjct: 251 GYTHAALLDEVIDAIARHDAAAAFAGVDRVIQTGQDPRRFVEDLLERLRDLIIVGATSVE 310 Query: 299 --PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L RMR A ++ + E+ A R+ +E+ + R Sbjct: 311 GAAAVLRGTPEDELERMRAQAVAFGAVELSRAADVVNAALTEMTGATSPRLHLELLVARV 370 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + A P P +A A + + Sbjct: 371 LVPASDDTHRGALARVERLERRVGVADAGADPAPATPVAAAAPAAAPAPASAPAPAATSA 430 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 T + Sbjct: 431 PVAAPDPAPTPDPAPAAKSTETGATT---------------------------------- 456 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + A + + + A P RD W + V + K Sbjct: 457 QTPAASAPDESSPSSSGTGAPAAEAPSAPAPTAPVGPVTFEQLRDSWPSVVEAVEKAKRS 516 Query: 537 EQVAL--NAWKEESDNAVCLHL--RSSQRHLNNRGAQ-----QKLAEALSMLKGSTVELT 587 + + +D+ + L + RGA L A+ + G V+ Sbjct: 517 AWLVAVTATPRALTDDVLTLSFVSANDAERFKERGAPGQGVSDILRTAILDVLGIRVKFI 576 Query: 588 IVEDDNPAVRTP 599 + + P Sbjct: 577 ARVEPHGGSAAP 588 >UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT09_EIKCO Length = 754 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 233/620 (37%), Positives = 320/620 (51%), Gaps = 13/620 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALGKGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET PCG C +CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCETPHEGEPCGQCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I +E AL LL RAA GS+RDALSL DQAIA G G V+ V M Sbjct: 181 QQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLLDQAIAMGSGSVTEADVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D SL++A +G ++A E A R I +++ L E+ LL ++A+++ PA Sbjct: 241 IGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAIGFDSALSELALLLQKLALIKTIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D +++LA + IQLYYQ ++ G+++LP APD G MTLLR LAF Sbjct: 301 AVPADDPE-RDTLQQLAGQLGDEQIQLYYQCVIHGKQDLPLAPDEYAGFVMTLLRLLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P PE + S + + A PQP P+ A +Q + Sbjct: 360 PLAAAELPEGSQISGSELHDPAPKPRPAATPQPDKPPRLAENHIAEAPPAQAEPRLPESG 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 S NN + A+ + P + + + A Sbjct: 420 HNSQNEHGSFSGSPNNNGRLSQNNPLPQATATAARHTERLPENISGSPNSRHELSPNPNA 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + P + + A + + P A ++ +A Sbjct: 480 SGNPAPGLAEPGRPYPSEPQPTQTEAVPTAFESNPPWDDAPPPAGFETRQPDSPPSSGLA 539 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML---KGSTVELTIVED---DNP 594 + N N Q +A S GS + +P Sbjct: 540 ETEPSQNPANEF------PHSRNQNDSLPQHKHDAASRNESGLGSERLPETEQSGFLQSP 593 Query: 595 AVRTPLEWRQAIYEEKLAQA 614 +T + A E A Sbjct: 594 NGQTEAQSAAAETPEHTGTA 613 Score = 102 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 91/304 (29%), Gaps = 7/304 (2%) Query: 344 DRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 + T R P P + + P P + PT Sbjct: 443 NPLPQATATAARHTERLPENISGSPNSRHELSPNPNASGNPAPGLAEPGRPYPSEPQPTQ 502 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 T+ + ++ + ++ + R Q +P Sbjct: 503 TEAVPTAFESNPPWDDAPPPAGFETRQPDSPPSSGLAETEPSQNPANEFPHSRNQNDSLP 562 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKT-PELAAKLAAEAIERDP 522 A ++ E+ P +Q + +P +A PE A + D Sbjct: 563 QHKHDAASRNESGLGSERLPETEQSGFLQSPNGQTEAQSAAAETPEHTGTAALPLPDADT 622 Query: 523 WAAQVSQLSLP-KLVEQVALNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 W V+ ++ + A + + + + L + + + +R Q++ + L+ Sbjct: 623 WPHIVAAIAPKIGAAQMSAQHTACLGYDPQQHLLTLAVAEAGQVSISREHIQRIEQHLAA 682 Query: 579 LKGSTVEL-TIVEDDNPAV-RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 G V + TI + TP +Q + + QA+ + D+ Q + F A Sbjct: 683 AYGHPVSIRTIDWPADGNAAETPAMRQQRLRQAARDQAQSLLEQDSAAQDILNLFGARWL 742 Query: 637 EESI 640 ES+ Sbjct: 743 PESL 746 >UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Leptospirillum sp. Group II RepID=B6AMH2_9BACT Length = 540 Score = 321 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 170/513 (33%), Positives = 246/513 (47%), Gaps = 3/513 (0%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS LARKWRPQ F+D+VGQE V+ AL LS G++ A LFSG RGVGKT++AR+LA Sbjct: 1 MSTILSLARKWRPQLFSDLVGQEFVVRALTGTLSSGKLPQALLFSGDRGVGKTTVARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NCE G T PC CD+C EI +G D++EID AS T VED R L + ++Y P R R Sbjct: 61 KAINCEKGPTVNPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRSLREGIRYLPFRSR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +VY+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F ++L Sbjct: 121 SRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQHFRFRSLG 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V +I +LE+I+ +E ++ L L+ARA+ GSLRDALSL DQ GD S + + Sbjct: 181 VPEITAKLENIVRQELLSFPRAILNLIARASGGSLRDALSLLDQIRFLGDTPRSVEETAL 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG L+++++E N + + + A GI+ A L + + + M L Sbjct: 241 FLGMAGGLPEKKLLDSLLEGNLKNALENGDRILAMGIDPRATLRSLASKVRDLLMSSLLE 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + A + ++ LL G + +P + + L R + Sbjct: 301 CPLTDPRFAWDESEVPETPLPGAFFLEQMLSLLLEGEMGIRKSPQPSITFLLCLCRIVHI 360 Query: 360 HPRMPLPEPEVP--RQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PLPE + + P + A QQ Q Sbjct: 361 QNILPLPEILDRLSKTGLSSSPPEPTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQ 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 L+R + A A + + L + + + + + A ++ K Sbjct: 421 ILERCRDAGPAVLELLEHCPVKKLSSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIP 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 ++ + + A H E A Sbjct: 481 FELVVSTDSSDKSPEPDSSDALARNHPLVREAA 513 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 16/169 (9%), Positives = 33/169 (19%), Gaps = 14/169 (8%) Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 P + R T E + W + + Sbjct: 365 PLPEILDRLSKTGLSSSPPEPTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQILER 424 Query: 530 LSLPKLV-EQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 ++ + K+ S L ++ + E + G EL Sbjct: 425 CRDAGPAVLELLEHCPVKKLSSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIPFELV 484 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + D + P ++ F E+ Sbjct: 485 VSTDSSDKSPEPDSSDA------------LARNHPLVREAASLFGGEVI 521 >UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAA1_9ACTO Length = 967 Score = 321 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 161/626 (25%), Positives = 249/626 (39%), Gaps = 19/626 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TF V+GQEHV L L R+ HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG C++CRE+ G +D++EIDAAS V+D RDL + +AP R R+K+ Sbjct: 64 AQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P+++ TI SR + + + + Sbjct: 124 FIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPPDV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + L + +EEHI L L+ RA GS+RD LS+ DQ +A + DGQV+ Q A+L Sbjct: 184 LGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVLDQLMAGAIDGQVTYQTAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-- 299 G D V+A+ +G ++ G + + ++L L + ++ ++ Sbjct: 244 GYTDSALLDESVDALAGGDGAAAFRVVERMVESGHDPRRFVEDLLQRLRDLLIIAVAGDG 303 Query: 300 --AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + RM+ A+ P + + + A R+ +E+ + R L Sbjct: 304 ARDVLADTPHDQFERMQRQAQNWGPHGLSRAADLTDEALRAMTGATSPRLQLELLVGRIL 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP----QSAPQQAPTVPLPETTSQVL 413 P + AP P+ ++A E Sbjct: 364 VPSPGPAQAPVQGTVGMTGGGAPREASAPSSSKASSGRFGAREAREALARKKQERAEVSA 423 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A Q + A E ++ + A Sbjct: 424 PAAQAPASSAAPAPQGMPAWGSGPDWSAQKPVAPEPSSAPAQAARQEAPRHEAAHETAPA 483 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P + + E E A + R W V +LS Sbjct: 484 REATPAQAEPRPAAPPQQRHESSAPQRSETPARAEAPAWGRNADMLRGRWNEVVERLSSI 543 Query: 534 KLVEQVAL---NAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTI 588 V + + V L + + +A++ + G TV ++ Sbjct: 544 SRVTWSMVGGNAQLGAVDGSQVVLLFPVEAMVNAFSRGPRAADVEKAINEVTGLTVSVSA 603 Query: 589 VEDDNPAVRT---PLEWRQAIYEEKL 611 P Sbjct: 604 QVGQASGGAATTGPSAQASHPGPAAQ 629 >UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=B0TVX0_FRAP2 Length = 551 Score = 321 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 170/360 (47%), Positives = 241/360 (66%), Gaps = 1/360 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ LARK+RPQ+F++V GQ+H L +L + L ++HHAYLF+GTRGVGKT++ RLLAK Sbjct: 1 MSYQALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG+TA PC C+NC I F+DLIEIDAASRT VE+T+++LDN+QY P++GR+ Sbjct: 61 CLNCKTGVTAEPCNKCENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPE+VKF+LATTD K+PVTILSRC+Q HLK + Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ QL+ +LN+E+I+ + ++L +A A+GSLRDALSL DQAI+ G++ + M Sbjct: 181 SDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLLDQAISFCSGELKQAQIKQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D ++ +++EA++E N V+ + +A+L + + + + Sbjct: 241 LGIIDSEEVYNIIEAIIENNPSAVLPAVKNLTLTESNADAVLDRIAEIWFACCIYSFT-Q 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L + ++ I YQ + +K++ AP GV M +LR +AF Sbjct: 300 SLDAINDIDIDIINKVLDKISIEQAHFLYQLTITAKKDISLAPSFETGVTMAVLRLIAFQ 359 >UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K934_CYAP7 Length = 730 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 170/654 (25%), Positives = 290/654 (44%), Gaps = 40/654 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQE + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ C+ I + +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L+ I N+E I + A+ L+A+ A G LRDA ++ G ++ V Sbjct: 181 PLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDA-ESLLDQLSLLSGTITPARVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++A+ + ++ RG E +L + G + + + + Sbjct: 240 ELVGAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTA 299 Query: 299 PA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P L A+ ++ + A+ +I Q L +L + R+ +E+TLL Sbjct: 300 PTRSDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP---------QQAPTVPLPE 407 L+ E P + Q P ++ + P+ E Sbjct: 360 LSLGVVSKPSLEEKPVNGNNGKNGKGHHSSVQAPSISPNSQIISPPPQPKPEPKVDPVQE 419 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 ++ + Q ++ E V A + L S + + A+ Sbjct: 420 SSPPQTTPEKPKTTEQNIQPSEDLEKLWHQVLDQVEPPATQALFSQQGHLISFDGSVAII 479 Query: 468 KAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE---HEKTPELAAKLAAEAIERDPWA 524 ++ ++ ++ K +K ++ + PE+ + + Sbjct: 480 GVNSQNLFKLYQERISALETALKAIFQKFVKVNIQITNVNQAPEIPKETPSLNPISSRQI 539 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + +++ P+ + + + SS + +Q+++ Sbjct: 540 EPIKEVAQPQSTPSPDEEETFTNNGKSPQVDPPSSPEPESLSPSQEEI------------ 587 Query: 585 ELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 TI +D+ + E + ++ +A E L + F+ EL E Sbjct: 588 --TITQDEPEILDPVEENTLDESKNEINKACEL---------LIKAFEGELIEN 630 >UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBE2_9RHIZ Length = 617 Score = 319 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 262/579 (45%), Gaps = 27/579 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP TF D++GQ ++T L N + GRI Y+ +G RGVGKT+ AR+LA+ L Sbjct: 24 YVVLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGYMLTGVRGVGKTTTARILARAL 83 Query: 63 NCETG---------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 N E T G+ +C++I +GR D++EIDAAS T V++ R+++++ QY Sbjct: 84 NYEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASNTGVDNIREIIESAQY 143 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 P R KV++IDEVHMLS+ +FNALLKTLEEPP HV+F+ ATT+ +K+PVT+LSRC +F Sbjct: 144 TPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVPVTVLSRCQRF 203 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 L+ ++ + + I E + ALQL+ARAAEGS+RD LS+ DQAIA G+G V+ Sbjct: 204 DLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSILDQAIAMGEGHVT 263 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 +V MLG D + L EA+ + + G E ++ ++ +H IA Sbjct: 264 AASVRDMLGLADRGRIFDLAEAIFRGDLPAALNGFASLHRDGAEASEVIGDLAEAVHAIA 323 Query: 294 MVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 V+ A + A + R+ +LA + + +Q L+ G +E+ P+ + EM Sbjct: 324 RVKAVGEEPAGESLTAEEKKRLSDLASRLSMPYLSRAWQMLIKGLEEVGRTPNPDVAAEM 383 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV-PPQPQSAPQQAPTVPLPETTS 410 L+R E A A + P + + T P + Sbjct: 384 VLIRLAYTADLPTPDELIRGLGGSAMPARRPALAPAETRTSDTRPTVNTTTTAPRADAEH 443 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA--------RPV 462 LA V + + +++A+ V + Sbjct: 444 DDLATGDVFDFVGDDGELDDGDALDDDEQTSLSSASRLPDPRSFVDVVTLVGEKRDVKLK 503 Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA----- 517 K + + L++ L L+ +A Sbjct: 504 MHLENDVSLVKFDAVAGSIDVFLLPDAPPELANDLREKLNLWTGRRWVVVLSKDAGQRPI 563 Query: 518 --IERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCL 554 + R+ AA++ QL + V + L Sbjct: 564 GVVRREREAAELEQLKQHPAMRAVLQAFPDAKIAEVRRL 602 >UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 Tax=Alphaproteobacteria RepID=A1B872_PARDP Length = 592 Score = 319 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 164/437 (37%), Positives = 239/437 (54%), Gaps = 7/437 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG Sbjct: 7 NYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKG 66 Query: 62 LNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LNC + G T PCGVC++C I +GR VD++E+DAASRT V D R+++++V Y A Sbjct: 67 LNCTGPDGQGGPTTEPCGVCEHCVAISEGRHVDVMEMDAASRTGVNDIREIIESVHYRAA 126 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 127 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLR 186 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + Sbjct: 187 RIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETTATQ 246 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V AMLG D + L L + ++ +A + A G + A+L ++ + H +++V+ Sbjct: 247 VRAMLGLADRGRVLDLFDMILRGAAAEALAELQAQYADGADPMAVLRDLAEITHWVSIVK 306 Query: 297 LSPAALGNDM--AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++P AL + R + +A +P + +Q LL E+ AP+ M EM ++ Sbjct: 307 ITPEALDDPTIGPDERARGQAIAEKVPMRALTRLWQMLLKALDEVGQAPNAMMAAEMAII 366 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R Q+ A + AP P+ A Sbjct: 367 RLTHVADLPDPETLIRKVQASAAAGEFSRNAAPSAARGEAPPRAAAPRTPVAVRQDGSAA 426 Query: 415 ARQQLQRVQGATKAKKS 431 A +S Sbjct: 427 ALAVSPDALAGFPDFES 443 >UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZL2_SULD5 Length = 546 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 148/408 (36%), Positives = 217/408 (53%), Gaps = 22/408 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M +QVLA K+RP +F ++GQE + L++ L+ R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MPHQVLALKYRPSSFDKLIGQEAITQTLSSALNQNRLSHAYLFSGLRGSGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G ATPC VC++C + R +D+IE+DAAS ++D R+L+++ +Y P+ RF Sbjct: 61 ALVCEQGPNATPCDVCEHCLSANENRHIDIIEMDAASNRGIDDIRELIESTKYKPSSARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLTTQAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRVQHFRFKQIKQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L HILN E I +E AL++L+RA GSLRD L+L DQAI G ++ + V+ M Sbjct: 181 SDVINHLCHILNLEKIEYEKEALEMLSRAGNGSLRDTLTLLDQAIIYSKGYITPEHVATM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD Q +L A++ N ++ LI E E ++ E++ L Sbjct: 241 LGLLDPKQLETLFSAILNGNKTELLGLIKTL--ESYECEVVMDELIAYLKNAFF------ 292 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E R + +++ L + L + + + L + + Sbjct: 293 --------------EQDRRFSTLLYERFFKILSEAKSLLYINANNGFILSLVLFKMVEAT 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + E ++ P + P T +P+ Sbjct: 339 HIKTIEEMIDSLENEKLQMPLHTPMQEEETAHPLLLETSMETAHVPDQ 386 >UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=beta proteobacterium KB13 RepID=B6BTP5_9PROT Length = 512 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 156/386 (40%), Positives = 241/386 (62%), Gaps = 9/386 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LARKWRP+ F +VGQE ++ AL N + R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKNLALARKWRPKNFETIVGQEFIVEALKNSILGDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC TG TPC C +C EI+Q + +D+IE+DAAS T+V++ R+LL+N Y P ++ Sbjct: 61 CLNCHTGSNPTPCCECSSCVEIDQSKSIDVIELDAASNTQVDNMRELLENANYQPTSSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ SFNA+LKTLEEPPEHV F+LATTDP+K+PVT++SRCL F+L + Sbjct: 121 KIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRCLHFNLMQMTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL++I EE+IA+E A+ ++++ A+GS+RDALSL D+ I +G VS + ++ + Sbjct: 181 DEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSLADRVINYTNGNVSLEKLTQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D L+ +++ N ++V+ L+N+ I +E+ L + ++ Sbjct: 241 LGITSDGVIDELLTNILDNNKQKVLDLLNKLKEHHISYESALKVLSE--------KIFAI 292 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ + + +Q YQ + G K+LP++P + +G MT++R L F Sbjct: 293 SEEQTFGGGNKSIQR-GKQVSLQLLQTLYQISINGLKDLPFSPSQHIGFRMTIIRLLNFI 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTP 386 P + ++ ++ P Sbjct: 352 PTNNVNAIQLEKEQINHNESIENHEP 377 Score = 98.2 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 5/210 (2%) Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 + R + V+ L+ L ++ S + + R P + Sbjct: 302 NKSIQRGKQVSLQLLQTLYQISINGLKDLPFSPSQHIGFRMTIIRLLNFIPTNNVNAIQL 361 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNA 551 + + E E K E I+ D W V Q+ P + + +A N + DN Sbjct: 362 EKEQINHNESIE-NHEPKKKKTIENIQIDNWDHVVDQIK-PGMAKTLAQNCVVKSQEDNF 419 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L + +HLNN + L E+L + G ++ I ++ TP + +Q ++ L Sbjct: 420 LYLIVDDRFKHLNNDKYIKILEESLYTIYGE--KIKIEINEETVTSTPAQKKQIEKDDAL 477 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIR 641 A +SI D+ I+ + FDA++ E +I+ Sbjct: 478 KVATDSIKTDSKIENILNEFDAQIIESTIK 507 >UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bifidobacterium RepID=B3DUB5_BIFLD Length = 960 Score = 318 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 270/629 (42%), Gaps = 32/629 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A+++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM +E+ Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRMRLELL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 R LA P S P A + + T ++ + S Sbjct: 360 AARLLAGSESGFATAAPAPASSGMPPAAASSTSTTSAASGTGASGFAGASRGGFAGASHG 419 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + + A ++ S + + A A A Sbjct: 420 GFSGAARNQQAAAPQSTASHESVGGNGPVSDRPADSPSVQPAVATAAAGAGWGAPAASPA 479 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 A + P + A E E ++ ++ Sbjct: 480 VPAQPVAS--PAASDNRSIDEKWDAAVAALPETIREYVSRDKVPTVKFG---------PN 528 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------STVE 585 K + +++ K S +A L + +S + A + +A+ G S V Sbjct: 529 RKGLPCLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPSAVA 583 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 ++ +P + + + +A+A Sbjct: 584 ANGERVESVKRMSPEQLAKVKQQIAMAKA 612 >UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES0_ELUMP Length = 627 Score = 318 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 151/461 (32%), Positives = 222/461 (48%), Gaps = 12/461 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L+ K+RPQTF DVVGQE + L N + LGR+ HAYLF G RG GKT+ AR+ AK L Sbjct: 11 YISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKAL 70 Query: 63 NCE---TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG 118 NC A+PCG C C EI G +D++E+DAAS T+V+ R+ ++D V A R Sbjct: 71 NCTGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIIDTVALAATRD 130 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK++++DEVHMLS SFNALLKT+EEPP HV F+LATT+ K+P TI SRC F + + Sbjct: 131 RFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRPI 190 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L + +E+I EP+A+Q++A A G+LRDAL++ D+AIA DG ++ + V Sbjct: 191 TQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELVI 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG + +D + V+A+++ N + + G + + L ++ L + + + Sbjct: 251 DMLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLFYLSIG 310 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A ELA+ P+ I + + E +A + E+ + + Sbjct: 311 HGHEPFSGA------AELAKKTSPSYIAGLTRKINKVIDETKFADSPLITAEVGIFTVMD 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + T + P Q + T V A Sbjct: 365 SCIDL--DAFIKRLEKLESALSGNSPTEEEKKNLNSFNPSQTKDNNIEITQKPVTAKITV 422 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 Q A K A P+ Q Sbjct: 423 ENIGQEAPKKAPKVVHAKIADIPLPAKKSTTAQPENADFQK 463 >UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PKZ6_9PROT Length = 763 Score = 318 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 172/615 (27%), Positives = 265/615 (43%), Gaps = 55/615 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP++F ++GQ+ V +LA+ L GR+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKSFEQLIGQDAVAKSLAHALDSGRLSHAYLFSGLRGSGKTSTARIFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T PC VCDNC +GR +D+IE+DAAS K++D R+L++ +Y PA RFK++ Sbjct: 62 CDKGPTGKPCEVCDNCVMANEGRHIDIIEMDAASHRKIDDIRELIEQTKYHPASARFKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ + NALLKTLEEPP +VKF+LATTDP KLPVT+LSR F K + + Sbjct: 122 IIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRTQHFRFKPIAKSAV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L IL E+IA+E AL++LAR+ GSLRD L+L DQAI ++ +A++ MLG Sbjct: 182 VAHLAQILKTENIAYEDGALEILARSGSGSLRDTLTLLDQAIIFSREGITQRAIADMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +++ ++ + + +I E E ++ EM+ L Sbjct: 242 LDPAKIGEILDIVLRQDRAGAIEIIKEV--ENYNAETIIDEMIANLKD------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +R A + +++ L + L +PD + M + + Sbjct: 288 -------KFLRRDA-KFSLLMYERFFRILAGAKSMLAISPDNTYAISMMIFMMMEAVNLR 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E +S + + P +Q A + Q Sbjct: 340 EIDELIEVGRSLDQG-------------------EDYASASAPNLNAQSSAPNFRSNSNQ 380 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 A +EP A A +A+ + RPV +A A Sbjct: 381 SAAFTSNNEPGGAAFASSDRGSAISGVP-SFTASAKRPVNTAQNSGAGGAAKQSHDANGE 439 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + A + + + D + Sbjct: 440 IKPGAAAQAQNSSSSVKTGAQNEIYENFLAKIYDRDYDMGEKFSKCVE------------ 487 Query: 544 WKEESDNAVCLHLR-SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 + + + L R Q R + + L L G ++ I + P + Sbjct: 488 FLKFERGTLYLLSRAQGQDREYLRKGSRAINSVLKSLFGEGAKIKIEQSAPQNGDVPAQS 547 Query: 603 RQAIYEEKLAQARES 617 + + A A +S Sbjct: 548 ERDQNSARGATATQS 562 >UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonproteobacteria RepID=Q30Q97_SULDN Length = 543 Score = 318 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 143/412 (34%), Positives = 211/412 (51%), Gaps = 25/412 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQE + L+ L R+ HAYLFSG RG GKTS AR+ +K Sbjct: 4 SSEVLARKYRPINFDELIGQESISQTLSLALDANRLSHAYLFSGLRGSGKTSTARIFSKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE GI+ PCGVC NC + R +D++E+D AS K++D RDL++ +Y PA RFK Sbjct: 64 LICEKGISHKPCGVCQNCILALENRHIDIVEMDGASSRKIDDIRDLIEQTKYKPATARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKSIATN 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL ++AR+ GSLRD L+L DQAI V + V+ ML Sbjct: 184 KIADHLSHILNLEGIKYESEALDIIARSGSGSLRDTLTLLDQAIIYSKNYVDVRTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D L A+ + +++ + E + +L E++ L Sbjct: 244 GLVDPKFLQELFNAVFAKDYAKLIQHVKSLED--YEAQMVLDELIAFLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYASDALYSTLVLDRFFRILSDAKYLFSINADGSFVLSLIFFKMVEALR 341 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + +S ++ + P + Q +P + V Sbjct: 342 IKEVDQMI---ESLQKEIYRPAISCSPTENLPLNTTVQNIVKSVPNLSQSVE 390 >UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 Tax=Acetobacteraceae RepID=B5ZIA7_GLUDA Length = 687 Score = 317 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 164/425 (38%), Positives = 237/425 (55%), Gaps = 13/425 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP T D++GQ+ + L N +LGR+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 57 YRVLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARAL 116 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 117 NCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATRFRPMQ 176 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR KV++IDEVHMLSR++FNALLKTLEEPP V F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 177 GRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSRCQRFDLRR 236 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD------GQ 231 + + I E P AL L+ARAA+GS+RD LSL DQAIA G Sbjct: 237 VPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGSVEGDGAAP 296 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + V+ MLG D + L+EA++ +R +A+ +EA ARG + +L ++L L+H Sbjct: 297 IGAERVADMLGLADRGRVFDLLEAVLAGQPDRALAITDEAHARGADLGVMLGDVLELVHT 356 Query: 292 IAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ ++ PA + A R LA + + +Q LL G E+ APDRR Sbjct: 357 VSRLKAVPALRQSADLPEAERERGGALADRLSVPVLGRTWQMLLKGLSEVEMAPDRREAA 416 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 EM L+R P + + + P Q S A + +P Sbjct: 417 EMILIRLCYVADLPPPGDLVRRLTEGGETGGSGSGALSGGPAQGTSQGTSASGLSVPGRP 476 Query: 410 SQVLA 414 Sbjct: 477 VSGNP 481 >UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3Z5_DESDA Length = 741 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 233/524 (44%), Gaps = 15/524 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA ++RPQTFA V GQ+ V L+ + R AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLASRYRPQTFAQVAGQDMVKAVLSRAAAEDRPAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C CR+I QG VD+ EID AS VED R L + + YA GR+ Sbjct: 61 ALNCEHSPGPEPCNECAQCRKITQGVHVDVTEIDGASNNSVEDARSLRETIGYAAMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R++FNALLKTLEEPPE V F+ ATT+ K PVTI+SRC F + L Sbjct: 121 KVFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQHFVFRHLSK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +L +E++ E A++LLAR A GS+RD++SL DQ +A G Q++ A + Sbjct: 181 DALVEHLSGVLRKENVTFEDSAVRLLARRAAGSVRDSMSLLDQTLALGGEQLTAAATRQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L EA+ + V L + +G++ + E+ G L + +++ A Sbjct: 241 LGLAGQEMFAELFEALHAQDCPAVAGLCRQILQQGVDIGFFVRELAGNLRNLFLLRQGGA 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+ A + LA + +Q L ++ + + Sbjct: 301 AVASSLQLPADEAALWQGLAPRFSTAHLHAAWQMTLDAQRGIVQS------------PEP 348 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A + L + Q T P P + Q P+ S + Sbjct: 349 AAALELLLLNLALLPQLLPVGQVTPDQMPAGPPGAAPADANQPPSGSTSGPASSMPHGGY 408 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + A A P + + A A + E+A A Sbjct: 409 RSGQPPHAGAEAARHNAGTPDDAPAASGMGKSAARPRATTTAARPTTDGEEAETPDPAPA 468 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + ++ T + P+ + + + Sbjct: 469 CDHSRNQPSGQDENLTRGQNSPHSNQGRHPDKSHTSDQRDVRAE 512 >UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax=Tropheryma whipplei RepID=Q83FL2_TROWT Length = 522 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 190/357 (53%), Gaps = 5/357 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L R++RP+ F+++VGQ+ V L++ L R+ HAYLFSG RG GKT+ AR+ A+ Sbjct: 4 SEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARC 63 Query: 62 LNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC G T++PCG C +C ++ +D+IEIDAAS V+D R L + +APA+ R Sbjct: 64 LNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRERAIFAPAQSR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 F+++++DE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + Sbjct: 124 FRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRTFSYPFALVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + I N+E I E L L+ RA GS+RD LS+ DQ + ++ ++ Sbjct: 184 ASVMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSILDQLMV--GKCITYESTVG 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +L D L A+ E +G A I + G E + +++ + + + + Sbjct: 242 LLRLAPDILLYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCNA 301 Query: 300 AALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + R+ L++ D+ + L L R+ +E+ L Sbjct: 302 EGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRLLLEIMLAS 358 >UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Candidatus Phytoplasma australiense RepID=B1VAI4_PHYAS Length = 602 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 207/394 (52%), Gaps = 4/394 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VL RK+RPQTF DVVGQ+ ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 4 SYLVLYRKYRPQTFQDVVGQKFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKV 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + C C +C D++E+D AS V++ R++ D QY P G+ K Sbjct: 64 INCIYPQSGDVCNKCTSCLG-SLQTNNDIVELDGASYNGVDEIREIQDKAQYKPHIGKNK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH+L+ ++FNALLK LEEPP+HV F+L TT K+P TILSR F + L +E Sbjct: 123 VYIIDEVHVLTPNAFNALLKILEEPPKHVVFILITTQMHKIPETILSRAQSFSFENLSLE 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I QL+ I N E I A++ +A +EGS+R+ALSL DQ + + ++++ ++ + Sbjct: 183 NIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQISSYQNNLITSEDIAEIK 242 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + +L ++E N + + L+N+A G + L+ ++ L + QL Sbjct: 243 GVVSGSFLKNLFCCLIERNYNQALKLLNKAVDSGKNLDLLVANLINSLKNYFLEQLKQNE 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + + I + L ++ L + ++ +E+ ++ F P Sbjct: 303 KEQNENLGKKNINNYELELQIDFILQIFLKL---QQNLKKSSQKKDLLEIAFIQICYFSP 359 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + P A + T+V + + Sbjct: 360 SHQNLSISETEKILKPNATKIEIEKTKVISEKKP 393 >UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NVX1_9BIFI Length = 935 Score = 317 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 160/646 (24%), Positives = 265/646 (41%), Gaps = 30/646 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF VVGQ+ V L L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 5 MA-LALYRRYRPDTFEGVVGQDQVTVPLMRALDANKLTHAYLFSGPRGCGKTSSARILAR 63 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS VED R+L D +APAR Sbjct: 64 CINCAQGPTSHPCGECESCKDLANGGPGSIDVVEIDAASHNGVEDARELRDRAGFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P+++ TI SR + + + Sbjct: 124 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPERVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I +EHI EP L+L RA GS+RD LS+ DQ + DG+++ + Sbjct: 184 PQEIMGPYLEQICEQEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVDGEMTYDSA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D V+A++ +G + +I + G + + ++L + ++ L Sbjct: 244 VALLGFTPDVLISEAVDAVINRDGAALYGVIQKVIVGGFDARRFVEDLLAYARDLLVLTL 303 Query: 298 SPAALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + ++ + A+ + I +T+ ++ A RM +E+ Sbjct: 304 AGDKAESVLSDDAAENREDLHRQAQALGLPAITAMAETINQALVQMVGAVSPRMRLELLA 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R LA L R+ A V + P +T S Sbjct: 364 ARLLATREPGALQSGAAMREGDADVETHHKAPAPHGGFIGAGRKEMQPAATTAQTASATT 423 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + A S+ A+ A +A A + P Sbjct: 424 QSASAPAQTPSGSPAATSQRQASQAAAAPADAYASAATHAAAADAAATDAWGV-AMPVMP 482 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-- 531 + + + + + + A + W A V+ L Sbjct: 483 ATSAAASPSSPSSPAASADGSASAHASGTAADASQASTSAAMSGTPDERWDALVASLPEQ 542 Query: 532 --------------LPKLVEQVALNAWKEESD--NAVCLHLRSSQRHLNNRGAQQKLAEA 575 L A W + + + + Q + A Sbjct: 543 IRMYVDRTHVPRINLAADPRTGAQRLWIKFDTPLSKYAFAFAVANESIGGSNRVQDIVRA 602 Query: 576 -LSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + + G V L + P + +E+ + I+ Sbjct: 603 KVHEVFGDQVSLAPTQKMANGEVAP--PVSRLTDEQRKTIKAQIMQ 646 >UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6I0_MYCCR Length = 665 Score = 317 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 136/526 (25%), Positives = 243/526 (46%), Gaps = 18/526 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y RK+RPQTF DVVGQE ++ +L N ++ + HAYLF+G+RG GKTS+A++ Sbjct: 1 MSSKYIAWYRKYRPQTFNDVVGQELIVQSLKNIITSQQYFHAYLFAGSRGTGKTSLAKIF 60 Query: 59 AKGLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A LNC+ PC C +D+IEIDAAS V++ R+L++NV P Sbjct: 61 ANTLNCQHKRDLLIPCETCIA----NINNSLDIIEIDAASNNGVKEIRELIENVANLPQN 116 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 +KVY++DE HML+ +FNA LKTLEEPP+HV F+LATT+ K+P+TILSR +F+ Sbjct: 117 SPYKVYIMDEAHMLTTSAFNAFLKTLEEPPKHVIFILATTEVHKIPLTILSRLQRFNFVK 176 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + ++ + +LE +L +E I++E AL+++A+ +EGSLRDALS+ +Q G+G+++ V Sbjct: 177 VQIQDVIKRLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILEQVSTFGNGKLNLSDV 236 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G +++ + + ++ + + +A++ + +G + + L +L L+ + + Sbjct: 237 ETLFGLTSNEKIVEFINSLYAEDIKESLAILKQIFEQGKQTKLFLNSILNLIKNWLIYNI 296 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + I + ++ I Q + ++L Y+ + +EM +++ + Sbjct: 297 AHSTDLLSNSDI-EILDKI--KIDKAFAYKLQQIIFETIEKLIYSDNSNSFLEMMVIKII 353 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A E S+ P T + + + + + + Sbjct: 354 AKKEESRTVESYANPVSYLPSKIAENTIITNDKQEFDNQKIKINFQRPKDENPFQSQSWK 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 VQ T + +P + + Q PS Sbjct: 414 SNISVQIPTPQQ--------SDKPKISTLKKSQEIANFDGQKEGYPSPETTIANNDSQSL 465 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + ++ + L + + E + D Sbjct: 466 IETIDEHFNEQVMENNLSYLAQEEQIEHNSSPILEQNLTNNALDSH 511 >UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Actinomycetales RepID=DPO3X_MYCBO Length = 578 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 149/545 (27%), Positives = 228/545 (41%), Gaps = 8/545 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TA PCGVC++C + +D++E+DAAS V+DTR+L D YAP + R++V Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R L I +E + + L+ RA GS RD LS+ DQ +A + D V+ +L Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ + + I G + ++L + ++Q P A Sbjct: 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + RMRE A I + Y + + G E+ A R+ +E+ R L Sbjct: 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-PQPQSAPQQAPTVPLPETTSQVLAAR 416 + ++ P VP P +A + P A Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPAS 421 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + R+R + + A E Sbjct: 422 SEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQR 481 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 ++ V + + + A + + Sbjct: 482 NADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEE 541 Query: 537 EQVAL 541 +A Sbjct: 542 HMLAE 546 >UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 Tax=Treponema pallidum RepID=B2S4P2_TREPS Length = 572 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 141/519 (27%), Positives = 234/519 (45%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQV A ++RPQ F V+GQ+ V+ L L ++ AYLFSG G GKTS AR+LAK Sbjct: 1 MAYQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C +CREI G +++IEID AS T V D R + + + + P R+ Sbjct: 61 ALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ ++P T+ SRC QFH + +D Sbjct: 121 KVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L + IA E L +AR + GS+RDA +L DQ + S G V+ + + Sbjct: 181 QTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + DD +L + + L++ + G+ E +++ + + + Sbjct: 241 LGLMTDDSLAALFSHCCRKDARAALELVDALVSSGVSVEQCVIDCVRYARALLLFTQGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + T + I+ LL +++ ++ D R +E+ + R Sbjct: 301 NESLVGIAANQVPEYVRTTWNASQIERALGLLLQLFRDIRFSVDPRYELELAISRLAWLS 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + E V S + T + + P + Sbjct: 361 EYVSIQEVRVALDSVQQILDTHAVPGVCSASVGSDDGETGVVSPHGIRPPMSTSVCTVRA 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + ++ A + + E SV V+ S + + + + Y + Sbjct: 421 LQDALVEKLRASHQMLATALGSSYSWREEDTSVCMCVRTHYERSVISQHASLLKEYASEL 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + + ++ + + K A H + L ++ Sbjct: 481 LGREVCVRVLLDSVPSSKVAPSHLPQSPAPSALFTTSLL 519 >UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Enterobacteriaceae RepID=DPO3X_BUCBP Length = 370 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 182/366 (49%), Positives = 271/366 (74%), Gaps = 3/366 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +LA+KWRPQTF DV+GQ+++++A++N L LGRIHHA+LF G RG GKT+IAR+LAK Sbjct: 1 MNYHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+ PC C NC E+EQG F+DL E+DAASRTKVED ++LLDN++Y P++GRF Sbjct: 61 SLNCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSR+SFN LLK +EEPP+H+KF+LATT+ +K+P TILSRCLQF LK +++ Sbjct: 121 KIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I + +IL++E+I +E +AL L+++ +EGSLRDA++LT+Q I+ G G ++ + V Sbjct: 181 NEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKT 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +DQ L ++ ++ + + ++ + I +E +LVE+L LLH+I+++++ P+ Sbjct: 241 LGMLYEDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQISIIKIIPS 300 Query: 301 ALGNDMAAIEL---RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ND + ++++A DI LYYQT L+G+KEL APD+++ +EMTLLR Sbjct: 301 IKLNDTKYSKNMQHAIQKIAELSNYNDIYLYYQTALLGKKELHIAPDQKISIEMTLLRMF 360 Query: 358 AFHPRM 363 + + Sbjct: 361 NLNTKP 366 >UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V2B2_SPHWW Length = 582 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 156/377 (41%), Positives = 222/377 (58%), Gaps = 5/377 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F +++GQ+ ++T LAN + GR+ HA+L +G RGVGKTS ARL+AK L Sbjct: 8 YRVLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKAL 67 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCGVC+ C I +GR +D++E+DAAS T ++D R++++ V+YA Sbjct: 68 NCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREIIEAVRYASVS 127 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS+ +FN LLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 128 ARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRFDLRR 187 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + +++ +++ E + +P AL L+ARAAEGS RD LS+ DQAIA G G+V Q V Sbjct: 188 ITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIAHGSGRVEAQQV 247 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D L M++ + V+A I G+E A+L +L H I ++ Sbjct: 248 RDMLGLSDRGAVRRLFGEMLKGDAAAVLASIRGQYDLGVEPVAMLHGLLETCHAITRAKV 307 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A + + +Q LL G E+ A EM LLR + Sbjct: 308 AGTDDPALSAEEREAYGDWAGKLGFATLHRLWQLLLKGHGEVQTAAMPIEAAEMALLRVV 367 Query: 358 AFHPRMPLPEPEVPRQS 374 E S Sbjct: 368 HASQLPDPGELARRLAS 384 >UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMU3_THEM4 Length = 460 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 121/322 (37%), Positives = 188/322 (58%), Gaps = 4/322 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L RK+RP+ F ++VGQ HV N L I HAY+F+G RG GKT++AR+LAK LNCE Sbjct: 4 LYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCE 63 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PC +C+ C I++G F+D++E+DAAS +++ R + + V Y A+G++KVY+I Sbjct: 64 NPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGKYKVYII 123 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K + + I Sbjct: 124 DEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDIIK 183 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +LE + E I A+ +++ A G LRDAL++ +Q I S + + V LG + Sbjct: 184 RLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRETLGLIP 243 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 D L+E + + + + LI+E G E L + + L I++V+ + + Sbjct: 244 DTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKL--ISLVEENNHNYIHF 301 Query: 306 MAAIELRMRELARTIPPTDIQL 327 + I ++++ I L Sbjct: 302 LKPISEILKDI--KYSEEKITL 321 >UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C546_SPHTD Length = 589 Score = 316 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 230/489 (47%), Gaps = 26/489 (5%) Query: 4 QVLARKWRPQTFA--DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 Q L RK+RP++FA + VGQEH+ L N + L R+ HAYLF G RG GKTS ARLLAK Sbjct: 16 QSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKA 75 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC A PC C+ C I G VD+IEIDAAS V+D RDL + V+YAP + R Sbjct: 76 VNCLAPDPEARPCNACEACEAINAGTAVDIIEIDAASNRGVDDIRDLREKVKYAPTQLRV 135 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDE H L+R +FNA LKTLEEPP HVKF+LATT+P KLP TI SRC +F + + Sbjct: 136 KFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQRFDFRRFAL 195 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-----QVSTQ 235 + L + E + E AL+L+AR A GS+RDAL L +Q G+ ++ Sbjct: 196 SDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKLVITAD 255 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV + G D+ ++LV+A+ + + + +I EA G + L +++ L + ++ Sbjct: 256 AVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLRTLLLI 315 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + R A ++ +T L ++ +E+ L+ Sbjct: 316 RAGGTSD-----EAGDDARAQAEQFTVAELAALVRTFSSIEGALNKGSYAQLPLEIALV- 369 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 E V A + P P +P A +P P P + Sbjct: 370 -----------ESIVGATPAAAPPAESPQPPPIRPAEPARAVAPSP-RPEPARRQPPVRE 417 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + R + + P A RP +ALERL + +++ + A Sbjct: 418 PSPVLRTVRPVDSPRPAPTPAATPRPAAGSALERLVASWGQIRRDVKMANSRVAALLSSV 477 Query: 476 YRWKATTPV 484 Sbjct: 478 DPLDVRGEE 486 >UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8I9_9BACT Length = 648 Score = 316 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 161/623 (25%), Positives = 259/623 (41%), Gaps = 10/623 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RPQ+F+DVVGQ + + LS GRI HAYLFSG RG GKT++ARLLAK + Sbjct: 2 YQSLYRRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC A PCG C +C I GR +D++EID AS V++ R+L NV A G +KV Sbjct: 62 NCTARNGAEPCGQCQSCLAIRDGRSLDVVEIDGASNNTVDEVRELKANVGLASFGGNWKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT+P K+P TI SRC L V Sbjct: 122 YIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQHIPFHGLSVPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I QL+ + E ++ E AL +AR+++G +RD LSL +Q IA G G V+ AVS + G Sbjct: 182 IVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIALGGGSVTKAAVSQLTG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ S + ++ + R ++++++ G E L+ + + + ++ A Sbjct: 242 GGSTEEIQSWL-SLCRTDPARSVSVLSDMFLSGALPERLVSNVFSSVRNLWLLVRWGQAG 300 Query: 303 G---NDMAAIELRMRE--LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 E + A ++ + L ++ + L+ Sbjct: 301 LAGTAFSEDEEGWLLREGEAARGHSGSLESFLVRLAALTPQIRRGMGSSVV--AGLVSMW 358 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A P P + + P P + E ++ Sbjct: 359 AVDALSGKEPAVAEPPVMKPSIPANRVFSSPAPAAPAQDGGKTGVSSEREPSASRAPEPA 418 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK-KEAY 476 + + + A + A++E + + V P + +A + ++ Sbjct: 419 LTVDLPPRETENEPQNAQPFQEEAEQPASVEEKVNASSPVSLEEDPGRMAEAVDELRKFP 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + ++ + + +A + + + + V Sbjct: 479 AAEDPVLWTVVHLASFAGGEGGVTVDLDGSQTIAWEAMNDRRMAALRGRLKAHFPDLENV 538 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 ++ S + ++ EA S + + Sbjct: 539 TVRFCGQTRDCSGLTELEDAEKMISRMAGAKEEKADQEAESAEGSEPAKAGLQISPVEVE 598 Query: 597 RTPLEWRQAIYEEKL-AQARESI 618 P E A E+K+ AQA + Sbjct: 599 PVPAEPAGAAQEKKVGAQAESVL 621 >UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y4_9BACT Length = 640 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 167/625 (26%), Positives = 257/625 (41%), Gaps = 43/625 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQ F+DVVGQ + + + G I HAYLFSG RG GKT++ARL AK + Sbjct: 2 YISLYRRYRPQKFSDVVGQSAAIGVITRAIESGAIGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + A PC C+ CR I +G +D+IEID AS V++ R+L ++V A +KV Sbjct: 62 NCPSKTGAEPCNECETCRAIREGSCLDVIEIDGASNNSVDEIRNLKEHVALASFTCPYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT P K+PVTI SRC + +EQ Sbjct: 122 YIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQHIPFHGMTLEQ 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++L+ + E I AL +AR +EG +RDALSL +QAIA G G V+ + V +LG Sbjct: 182 IVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQAIALGAGSVTRETVDKLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + E + ++ G E E L + + + + + + Sbjct: 242 GGSSSSIRQWLSGSHAT-PENSLPILEGLFRSGAEPERFLSVLFACVRNLWLQKRWGEKI 300 Query: 303 GNDMAAIELRMRELART---IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +A E + LA+ + ++ + ++ + + + L Sbjct: 301 LRALALSEEERQWLAQEKDFLSLPHLEELMARIASLLPQVRRGLSIDVLCGLLVSWTLKS 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL-PETTSQVLAARQQ 418 S V+P + + AP AP PE+ Q Sbjct: 361 AVSEVSLPDVETAASATNVSPEGRAARIRSGARDTGAPASAPVRSRLPESAPSAAQKAQT 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + + + + E + S+ A + Sbjct: 421 APETEMPPREQAARAESGASPSAAEVPSAETVGSL-----------------APLHSDVK 463 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + ++ VA P L + + EL L + ++ ++ + K + Sbjct: 464 DALLSALGKQPNVAVPLCLADIVYDRERQELGILLNEDDVQA---YETLNSERMAKAAQS 520 Query: 539 VALNAWKEESDNAVCLHLRSS-QRHLNNRGAQQK--LAEALSMLKGSTVELTIVEDDNPA 595 V E + R HL+ A + L AL+ D P Sbjct: 521 VLHLNDLEIQSIKLQCGSRVERFDHLDAERAPENTPLQLALAE-------------DQPG 567 Query: 596 VRTPLEWRQAIYEEKLAQARESIIA 620 +P E A E + Sbjct: 568 KDSPYAGFLRRDAEA--AAPERLEK 590 >UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=C7QXQ5_CYAP0 Length = 650 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 173/632 (27%), Positives = 269/632 (42%), Gaps = 18/632 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + TATPCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + + L I +E I AL L+A+ A G LRDA ++ G ++T V Sbjct: 183 LDAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDA-ESLLDQLSLLSGTITTDKVWE 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + L L++A+ N E V+ RG E +L + G + + + +P Sbjct: 242 LVGAVPEQDLLLLLQAIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAP 301 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A I Q L +L R+ +E+TLL L Sbjct: 302 NRPDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLL 361 Query: 358 AFHPRM----PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 +P + +P P P P Sbjct: 362 PSAFMKSEVTSQKSEVIPTPTPPLSPSPPPPSPHPPHTPPPPLTPSPPLSQNPVINDVNG 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP--A 471 L ++Q ++ + R + VQ + A Sbjct: 422 IWPAILAKLQPFSQGLVNSHCYFLNLEESAAYIGVRSQGLLKLVQGKIPDLEAAFAAVCQ 481 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 + K +P P + E + A+ + + Sbjct: 482 RPIKVHLKVASPSSNAVSTSPQPVNPSPSPVPISNSETEKPVIAQPVINSDKETISNTPK 541 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 N E ++L+ +L++ ++ + +G V+L + Sbjct: 542 TEIKAFSHKQNNLPESE-----INLKDISENLDDEDLKKVAENFAKIFEGEIVDLAPSFN 596 Query: 592 DNPAVRTPLEWRQAIYE--EKLAQARESIIAD 621 + Q I + +Q +SI D Sbjct: 597 SKIPSLSVGSEEQKIKHKTQPNSQLSDSIKLD 628 >UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=Lactobacillus RepID=Q1G919_LACDA Length = 607 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 148/486 (30%), Positives = 234/486 (48%), Gaps = 6/486 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RKWRP+TF DVVGQE + L N L G++ HA+LF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC +QG D+IE+DAAS V++ RDLLD V YAP G++ Sbjct: 61 ALNCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP V F+LATT+ QK+P TI+SR +++ K Sbjct: 121 KVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + ++E+IL +E + +E +AL+++A+ A+G +RDALS+ DQ ++ V + + Sbjct: 181 EAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +Q L+ A++ + + + L A G + +L E++ L + + + Sbjct: 241 TGFAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +E+A+ P L + +++ +E+ L++A Sbjct: 301 GEFLT----DDFAQEIAQQ-SPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQASQ-K 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + P+V + P + + Q QQ P + + + Q Sbjct: 355 RQNSQAGPQVASAASNPAIERQIKVLKEQVHQLTQQVQQLSQRPSQAFSPRHVFQLNQQL 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q + ++ AA + + + A + + Sbjct: 415 YTQKGGATEVAQQAAEKQQQAESLQAEITSSQEEIYAVLSQATKPGLAEARNLWDRDLPS 474 Query: 481 TTPVMQ 486 Sbjct: 475 MLEEPA 480 >UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R066_PHYMT Length = 580 Score = 315 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 194/356 (54%), Gaps = 11/356 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY RK+RP+ F +VVGQ+ ++ L N + ++ H YLFSG +G GKT++A++ +K Sbjct: 1 MSYIAFYRKYRPKFFKNVVGQKIIIQTLRNAIIYKKLSHCYLFSGNKGTGKTTLAKIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC CG C+ C I++ D+IEID AS VE+ RDL + + Y ++ Sbjct: 61 TINCLNNKDGDCCGYCEACNIIDKQNS-DIIEIDGASYNGVEEIRDLKNKINYKTNFLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVH+L+ ++FNALLKTLEEPP+HV F+ ATT+ K+P TILSR FHL + Sbjct: 120 KIYIIDEVHVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETILSRTQHFHLLNIQK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L I++ E I+ + AL+ +A ++GSLRDAL+L DQ + ++ V + Sbjct: 180 QHIIEKLTEIVDLEKISIDKEALEKIAFYSQGSLRDALNLLDQISSYETDLITVTCVQEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +++ + L++ + +++L+++ G L +++ +L + Sbjct: 240 KGAVEESNLIKLLQYTFNKDLNSIISLLDKINNEGKNILILFNDLIIILKNCLL------ 293 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++++ +TL+ ++ L + + +E+ ++ Sbjct: 294 EELLSPHDKKIKL----ENFSLELANYVLKTLIDYQQNLKNSDLKESFLEIIFIQM 345 >UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 Tax=Alphaproteobacteria RepID=C3MC56_RHISN Length = 645 Score = 314 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 188/649 (28%), Positives = 284/649 (43%), Gaps = 77/649 (11%) Query: 2 SYQVLARKWRPQTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 +Y+VLARK+RP+ F+D+ VGQE ++ L N GRI AY+ +G RGVGKT+ AR+LA+ Sbjct: 39 AYRVLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILAR 98 Query: 61 GLNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LN +T P ++C+ I GR VD+IE+DAAS T ++D R++++ V+Y P Sbjct: 99 ALNYKTAEIDKPTIDLRIPGEHCQAIMDGRHVDVIEMDAASHTGIDDIREIIEQVRYRPV 158 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY+IDEVHMLS +FN LLKTLEEPPEHVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 159 SARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 218 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + ILN+E + EP AL ++ARAAEGS RD LSL DQAIA G G V + Sbjct: 219 RISASDLVGLFSTILNKEAVRFEPEALAMVARAAEGSARDGLSLLDQAIAHGGGSVEMET 278 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +MLG D + + L E +V+ + + G +L ++ H + ++ Sbjct: 279 VRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMK 338 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 P A + + R R E A ++ T + +Q LL G E + EM L+ Sbjct: 339 YVPEAANDQSFSEIERRRGAEFAGSVAVTTLSRIWQMLLKGIPEAESSARPAGAAEMVLI 398 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R P A ++ + AP T +Q Sbjct: 399 RLAHAAHL--------------PSPEEAARRLLELSGGEAGDGRPAPARTSGNTQAQAGQ 444 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 Q + + A RA P D +E PA+ Sbjct: 445 PVQARSVEAAPVQRPSANGATMLRAVP-------------DVAAQPITVGRIEDRPAQAP 491 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 A + + PV ++ A+ + L Sbjct: 492 AAKAEPKVPVNSVGDIA------------------------------DLCAKNRDIKLKT 521 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LV + ++L + +LA L G + + P Sbjct: 522 LVRGFLR--LVHIEPGRLDVNLSDDAP----KTLLNELAVKLKEWTG--IHWVVSYSREP 573 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRP 642 T +E Q E+++ AR+ D ++ + F A + + IR Sbjct: 574 GEPTLVEAEQRAQEQRVNDARQ----DPDVAAILARFPGARITDVRIRA 618 >UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanobacteria RepID=Q3B0U5_SYNS9 Length = 625 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 170/646 (26%), Positives = 271/646 (41%), Gaps = 37/646 (5%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQ L K+RPQ F +VGQE + L N L+ RI AYLFSG RG GKTS AR+L Sbjct: 1 MSSTYQPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC+ G T PCG CD CR I G +D+IEIDAAS T V++ R+L++ ++AP Sbjct: 61 ARSLNCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 + R+KVY++DE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC +F + Sbjct: 121 QARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFR 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + ++ + L I +E IA +P A+ ++A+ ++G LRDA SL DQ + + A Sbjct: 181 RIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQL-SLLPPPIEANA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + + + L+L +AM + ++ RG + A+L + G+L + ++ Sbjct: 240 VWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLVLMA 299 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P ++ ELA++I T + + L ++L + R Sbjct: 300 AAPNRPELTGVSPQFRDQLPELAKSIGRTRLLQWQAQLRGAEQQLRQSVQPR-------- 351 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + P+ A VP+ T Sbjct: 352 --------------LWLEVLLLGLLAEPMSPALATAPRTPQATPAPAAVPVLVTADAPTP 397 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 AT + A V A S T+ + + P+ + Sbjct: 398 TATTPAATTPATPSPSPAQAKTPELPTVAAVAPTPATSGTNLPELWQQILGSLELPSTRM 457 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 +A + V + + L +A + + Sbjct: 458 LLSQQAQLVRLDANRAVVQVAGNWMGMVQSRASLLEQAVAKA--LGGSRQLIIEASTSAI 515 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + L + +A + + T + P Sbjct: 516 AATSAPTAPLVQPPPQTAPAPVETETPQLPKTEVVPAVVDASTPITRLTTQ---EPAKPP 572 Query: 595 AVRTPLEWRQAIYEEKLAQARE---SIIADNNIQTLRRFFDAELDE 637 A +P+ Q + E ++ D + L FF+ ++ + Sbjct: 573 ATPSPVAISQPVQAEPAQNPANPSPALGLDRQAKNLADFFNGQVLD 618 >UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptospira RepID=B0SRY5_LEPBP Length = 497 Score = 314 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 236/473 (49%), Gaps = 11/473 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS +QVL RK+RPQ F DV+ Q+ + +L N +I HAY+F G RGVGKT+IAR+L Sbjct: 6 MSENHQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARIL 65 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK LNCE PC C +C EI +G D+ EIDAAS + V++ R+L +NV++ G Sbjct: 66 AKRLNCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +++VY++DEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P TILSRC FH + + Sbjct: 126 KYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKV 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 V +++ +E + +E + ++ L +A+ +GS+RD LS +QA+ DG ++ + Sbjct: 186 PVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKLR 245 Query: 239 AMLGTLDDDQALSLV-EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 M+G D + + + + ++ + GI+ + + + L+ + ++ Sbjct: 246 KMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENLFQAGIDLSKFIWDFIEFLNSLLLIKD 305 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK-----ELPYAPDRRMGVE 350 L+ N ++++ R + + L + + + +L + + ++ +E Sbjct: 306 NLADRESINIPHEDLQKLKQNYRELDREILVLLAERIFSIHEKLNLMKLRSSYEMKVYLE 365 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + + + + + + + + + PT + Sbjct: 366 IQFRKLILDREKPSVSGLLAKISELTKLVQGDLSNIPESVEPVKKISTPPPTQSATQKKE 425 Query: 411 QVLAARQQLQRV-QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV 462 A+++ ++ TK ++ + ++ + + + +++ + Sbjct: 426 PTTTAQKENDQIDSNHTKQNENMDSNPLPSKSESQSINKPISTPPSSPEDMEK 478 >UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=Prochlorococcus marinus RepID=A2C5C3_PROM1 Length = 565 Score = 314 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 131/418 (31%), Positives = 213/418 (50%), Gaps = 5/418 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RP +F ++VGQ+ + + L L RI AY+FSG RG GKTS AR+ AK Sbjct: 4 TYEPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKS 63 Query: 62 LNCETGI--TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC T TPCG C+ C+ I G +D+IEIDAAS T VE+ R+L++ ++APA+ R Sbjct: 64 LNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAKAR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC++F + + Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIA 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + L I +E I A+ L+A+ ++G LRDA SL DQ + ++ + Sbjct: 184 LHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQV-SLLPPPITQLNIIN 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS- 298 ++G + +++ + L ++++ + ++ + N +G E A+L + +L + + +++ Sbjct: 243 LIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVTN 302 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P L N + +LA + I L + + + +E+ LL L Sbjct: 303 KPTNLCNISREHSESLNDLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIHLLGML 362 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 + E + + ++ + Sbjct: 363 TDEVSKENNKIEQSLVKTKISDNSESKNTNNTSNRIVPNTEKEQIKTTAFLDETKTSP 420 >UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Tax=Rhodobacteraceae RepID=Q1GKB7_SILST Length = 608 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 175/583 (30%), Positives = 274/583 (46%), Gaps = 17/583 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG+ Sbjct: 17 YQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGM 76 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCG C++C I +GR VD++E+DAASRT V D R+++D+V Y A Sbjct: 77 NCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAYRAAS 136 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 137 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRR 196 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + V Sbjct: 197 IEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQV 256 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + L L++ ++ + + ++ A G + A+L ++ + H +++V++ Sbjct: 257 RAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDLAEITHWVSVVKI 316 Query: 298 SPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P A + R +++A +P + +Q LL +E+ AP+ M + Sbjct: 317 TPDAAEDPTISPDERARGQDMAARLPMRVLTRMWQMLLKALEEVAAAPNAMMA---AEMA 373 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 + LP PE + P Q A Sbjct: 374 VIRLTHVADLPSPEELLRKLQDTPPPPHPGGPGGGHPMQGMGSPAAGGGGGAPAYASAPP 433 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + + ++AL R S ++ ++ + Sbjct: 434 QGAPGGDPRGGHTMSTSGGQSAVLAQRADSALARYPSFEHVIELIRHHRDVKLLVEVETG 493 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 R + P + A A +I D A +++L Sbjct: 494 VRLVSYQPGRIEFTPAANAPQDLAARIGTALQNWTGSRWVVSIAPDGDAPTIAEL----- 548 Query: 536 VEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 A NA + E S + + + + + + A Sbjct: 549 -RDAAQNALRAEASAHPLVQAVLQNFPKAKITKIRTQEELAAE 590 >UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and tau subunit n=3 Tax=Corynebacterium RepID=C0WHV4_9CORY Length = 904 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 151/559 (27%), Positives = 236/559 (42%), Gaps = 7/559 (1%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 GQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNCE G T+TPCG CD+C Sbjct: 2 GQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHGPTSTPCGKCDSC 61 Query: 80 REIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G +D+ E+DAAS VED R+L D YAPA R+++++IDE HM+S N Sbjct: 62 VSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAHMISPSGAN 121 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L ++ L+ + E + Sbjct: 122 ALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPAMKGLLQRTVASEGVQ 181 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 E ++ A GS RD LSL DQ +A +G ++ +LG D + + Sbjct: 182 VEDAVYPMVIEAGGGSPRDTLSLLDQLLAGAGPDGLTYDLARPLLGVTDVTLLDDTIATL 241 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA----LGNDMAAIELR 312 E + + A I+ G + V++L L + ++Q P A L + Sbjct: 242 AENDKAGLFAQIDNVIEAGHDPRRFAVDLLDRLRDLMILQAVPGAIDAGLVSAPTDRAEV 301 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPR 372 + A+ + T+ +L A R+ +E+ L P + Sbjct: 302 LTAQAQRFSGPQLTYLASTVNDRISDLTGATSPRLLLEIMCAHLLIGTSSGAAPGAALGA 361 Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 S P A S P QA +Q Q Q A Sbjct: 362 ASQPGQLPQAAQPSGAPQSAQASQPNQAGQGAQSAQAAQSGQPGQSGQAAPSAGNGPAFS 421 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 A ++ A R S + Q P +A + ++ T + ++ Sbjct: 422 GAQDPQSAAAAIIARRRAKSQAQQNQPAPGSTAPAEPQQRQNQAATGPTGSEVPAQQSNQ 481 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAV 552 + +P +++ A A + +Q + EQ A A + + Sbjct: 482 AAAGTEAQSGQATSPSPSSQPEATAQQSRGEHEGPAQSAQATPAEQSAQPAPAAQHEQPA 541 Query: 553 CLHLRSSQRHLNNRGAQQK 571 ++ + +Q++ Sbjct: 542 QTESTGAENQGRSELSQEQ 560 >UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHM0_KOSOT Length = 503 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 129/392 (32%), Positives = 206/392 (52%), Gaps = 26/392 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ +VL RK+RP+ F ++VGQ+ V L + I HAY+F G RG GKT+ AR+LAK Sbjct: 4 MA-EVLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C++C ++ +D+IEIDAAS +++ R + D Y P G + Sbjct: 63 ALNCLS-HDDKPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DE HML+R +FNALLKTLEEPPEH+ F+LATT+ +K+P TILSRC F K L Sbjct: 122 KVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSE 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L+ IL EE + AL+++A+AA+G +RDA++L ++A+ G ++ V + Sbjct: 182 GQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFG-EKIEEDNVKNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L ++ S + A++ + + ++AL G ++++ + + L + Sbjct: 241 LGILPEEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQSIELTKDMISR----- 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT-LLRALAF 359 R + + L +E+ Y+ ++++ E+ L A Sbjct: 296 -----------------RELEFERGVKLIEKLWEVNREMRYSENKKLTFEVLSLTTLAAM 338 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP 391 + EP + +V P Sbjct: 339 NVPSVSVEPAKAVNAVVKEEVKKSNEEKEVEP 370 >UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau subunits n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5P9_9GAMM Length = 820 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 248/624 (39%), Positives = 344/624 (55%), Gaps = 10/624 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F +VGQEHV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFHQLVGQEHVKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C +IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCELGITATPCGQCSACLDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLSALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL +L EE I E +L LLA+AA+GS+RDALSLTDQAIA +GQV+ V +M Sbjct: 181 PQIEQQLSFVLTEEQIHFEVASLALLAKAADGSMRDALSLTDQAIAQTNGQVNESQVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A L+ ++V+ +G +++L+ + + +++L ++L L H + + QL P+ Sbjct: 241 LGLMDASWAKRLLVSIVDKDGAELLSLVADLVKQNANAKSVLDDLLSLTHLLLLTQLVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++++ P +Q+YYQ LL G+K+L +APD ++G+EM LLR LAF Sbjct: 301 AAA-FNEDEADFIDAMSKSLSPEQVQVYYQLLLGGKKDLQWAPDEKLGLEMVLLRLLAFE 359 Query: 361 PRMPLPEPEVP-RQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P S P + A+ Q+ S + T+Q Q Sbjct: 360 PHFSASNTISTVMPSALPSSNKAMSNIRQMLAGQASGDKLTAQTAQTAQTAQTAQTAQTT 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q Q + + + V ++ + P+ S + +A Sbjct: 420 QTTQNNSPVPTASVESVVEHPAVAADKVQTPELAVVENASEPLISQSAVSAVPLDAVALN 479 Query: 480 ATTPVMQQKEVVAT-PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + ++ + + L + + LA +A +A + Q++ P+ Sbjct: 480 NSLESTEPEQSQDAWHQQYDEILTQAQEYREYSDLAHQANTVPDNSALMQQINQPEDHLV 539 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLA-------EALSMLKGSTVELTIVED 591 + + ++D L Q L + S +I Sbjct: 540 TDTVSLESQADLPTSAQLVEQQLSGAQSAIAAILRNRNISSHGLVKPESSSLPLSSINTP 599 Query: 592 DNPAVRTPLEWRQAIYEEKLAQAR 615 + +T + R + + Q R Sbjct: 600 GDTEKKTEPQQRGNLVAQSQQQIR 623 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 113/351 (32%), Gaps = 13/351 (3%) Query: 294 MVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + P + + A+ +D+ T+ + + Sbjct: 482 LESTEPEQSQDAWHQQYDEILTQAQEYREYSDLAHQANTVPDNSALMQQINQPEDHLVTD 541 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + + + + S A A A++ + P+ + T Sbjct: 542 TVSLESQADLPTSAQLVEQQLSGAQSAIAAILRNRNISSHGLVKPESSSLPLSSINTPGD 601 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + + Q+ + + A + + V AP Sbjct: 602 TEKKTEPQQRGNLVAQSQQQIRPNDEREDKAMVAYAAVEKPQSPRSSH-VMDPAHLAPEL 660 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + + + +V+ P+ L A ++D WA + Q+ L Sbjct: 661 LVQISEQPKVEEVAETQVIEIPEGFVSPL----------TDIRFAHQQDAWANLIEQMQL 710 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + Q AL+ + D V L + + Q+HL++ ++KL E+LS+ + L+I + Sbjct: 711 GGRIRQFALHGLFSQQDQNVTLQVDAQQQHLDSAVMREKLTESLSLALARDITLSIEFVN 770 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP + +Q + + A+E I D Q R F A +DE SIR + Sbjct: 771 AVTG-TPYQIQQQLDSNRWYHAKEVIENDAVTQQFMRRFAAVIDENSIRAL 820 >UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMQ4_CYAP7 Length = 452 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 217/399 (54%), Gaps = 6/399 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ K+RPQT D++GQ + T L N ++L +I AYLF+G+RG GKTS R+LAK Sbjct: 1 MNYQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG C++C+ I G +D+IE+DAAS E RD++ + Q+AP Sbjct: 61 SLNCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGR 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE H LS + LLKTLEEPP +V F+L TTDP KL TI+SRC +F+ K Sbjct: 121 RYKIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRF 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + I +QLE I E I AL L+A+ ++G +RDA L +Q D V+ V Sbjct: 181 NNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDN-VTPVEVH 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LGT+ +D L+ A+ + E ++ +I + A G + +L ++L + + Sbjct: 240 QLLGTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQLLEFYTNALITLEN 299 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + N + + R++ELA + + + Q L ++ ++ R+ +E+ +L L Sbjct: 300 PKSPLNTLTSTTTQRIKELA--LNSNTVLNHQQHLRSCETQIKFSRLPRVMLEVAILGLL 357 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 + +P +S + + TQV Sbjct: 358 VQPTEVKIPLSSNGTKSSPKTTVNSELIWTQVINLQTPT 396 >UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 Tax=Borrelia RepID=Q0SN45_BORAP Length = 566 Score = 313 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 204/370 (55%), Gaps = 1/370 (0%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 A K RP+ F + GQ+ V+ L + + +I +AY+FSG RGVGKTS AR A+ LNC+ Sbjct: 8 ALKKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKN 67 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G T PCG C NC+ IE +D+IEID AS T V+D R + + + + PA ++++Y+ID Sbjct: 68 GPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRIYIID 127 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNALLKT+EEPP ++ F+ ATT+ KLP TI SRC F K L +E+I + Sbjct: 128 EVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNM 187 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L+ + E+HI +E AL+ +A + GS+RDA +L DQ ++ + + + + +G +D Sbjct: 188 LKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFTNSDIKLDQIRSKMGFTND 247 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 + L +++ + + ++ +++ G+ +E L++ + +++ Sbjct: 248 EFLEKLSVSILSEDVKELICILDSIFLAGVSYEQFLLDSIEFFREALFLKIGIKNFEFIG 307 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 E ++L ++ LL ++L ++ + R +E+ ++ L +P Sbjct: 308 IKSEDLRKKLIE-FDLNYLERIIVVLLETYRDLQFSINPRYELEINFIKILRLKNYIPNH 366 Query: 367 EPEVPRQSFA 376 Q+ Sbjct: 367 VLIKQIQNIE 376 >UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium RepID=Q98BM8_RHILO Length = 604 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 156/456 (34%), Positives = 237/456 (51%), Gaps = 6/456 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP F+++VGQE ++ L N + GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 18 AYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARA 77 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P ++C+ I +GR VD+IE+DAAS T ++D RD+++ V+YAP Sbjct: 78 LNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVS 137 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 138 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 197 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +D + L I +E I+ + AL ++ARAAEGS RD+LS+ DQAIA G G VS +AV Sbjct: 198 IDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGAGAVSAEAV 257 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + + L E +++ + +A G + A+L ++ H + ++ Sbjct: 258 RAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEFNHLVTRLRF 317 Query: 298 SPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 P A+ + R + AR + + +Q LL G E+ + EM L+R Sbjct: 318 VPTAMDDASLSQDERQRGADFARALSVRVLSRTWQMLLKGIPEVQSSNRPVSAAEMVLIR 377 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E A V A A + S Sbjct: 378 LAHAADLPTLDEALRSLDGAATVQNGASRPNGAPGGPGNGGGAGAVAQTRMPSGSSGAQT 437 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLA 451 + ++ + + + + +A Sbjct: 438 MRLVEAAPALAAFVAPPAPVSEPQQVPVRSLADIVA 473 >UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 Tax=Ureaplasma RepID=B5ZAS2_UREU1 Length = 603 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 120/397 (30%), Positives = 199/397 (50%), Gaps = 4/397 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP F DV+GQ + AL N + HAY+FSG RG+GKTSIAR+ A Sbjct: 1 MSELTLYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAA 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C C+ I + VDLIE+DAAS V+ R++ DN+ Y P ++ Sbjct: 61 SINCLKPNNGDCCEECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS ++NALLKT+EEPP+HV F+ ATT+ QK+P+TI+SRC ++ L+ Sbjct: 121 KVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ ++ + +E I A+ L + A+G+ RD LS+ DQ + + ++ Sbjct: 181 SELQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVT-NQKVIDIDLINKT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D+ + ++L+E + + + + I E GI EA +++ +L + Q + Sbjct: 240 FGLVDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTND 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +I+ + L+ + + L + ++ E+ L + + + Sbjct: 300 ETNLKKISIDELKKILSINFNANHL---LNNFISLYSHLKNSVNQVFEFEIYLYKIVNVN 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 + +P + T +P S Sbjct: 357 NDKLETKKTIPLIAIEKDKNTLPPSPPIAKTTSISKE 393 >UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM34_MYCA5 Length = 647 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 132/405 (32%), Positives = 211/405 (52%), Gaps = 9/405 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RP F +V GQE+++ L N + + +I HAYLF G G GKTS+A++ A L Sbjct: 5 YLALYRQYRPNKFDEVKGQENIIRTLTNIIKMQKISHAYLFCGPHGTGKTSVAKIFANTL 64 Query: 63 NCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C R +D+IEIDAAS T ++D R+L + +++ P ++K Sbjct: 65 NCSHSSDLLEPCQECIE----NIDRNLDIIEIDAASNTGIDDIRELREKIKHLPTHSKYK 120 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNALLKTLEEPP+H F+LATTDPQK+P+TILSR +F+ K +D Sbjct: 121 IYIIDEVHMLSKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTILSRVQRFNFKRIDEN 180 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVSAM 240 I L H+ ++EHI +E AL+L+A A GS RDALSL DQ I + + +++ V ++ Sbjct: 181 VIVMHLMHVYDQEHIDYEKNALKLIASLANGSFRDALSLADQVSIFATNSKITLVEVESL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ + L+ M N + V+ + + G + E L+ +M+ +L + + Sbjct: 241 FGLINLKNVIDLINLMASHNIKEVLQKLGKLIDAGADIERLVTQMINVLKDFLVYSRTED 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A +++ + I + L+ KEL Y+ +E+ ++ Sbjct: 301 AALLEISDVTDL---QTLKISIDKTYEFISELVNLLKELKYSDLPLQTLELGFIKMATLK 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 E+ ++P ++P + Sbjct: 358 THDENFVNEIVMPKAKEISPQTTPMKDFEIDVEPNSPTPKKRMSQ 402 >UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D230_WIGBR Length = 365 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 153/363 (42%), Positives = 235/363 (64%), Gaps = 1/363 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L KWRP+ F D++GQ+HVL L N +I+++YL SG RG+GKT++ARL+AK Sbjct: 1 MNYKPLNIKWRPKIFNDIIGQDHVLRFLKNSFLDKKIYYSYLISGIRGIGKTTLARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC I PC +C NC E E+ FVDLIEIDAAS TK+E+ +++LDN++Y P++GR+ Sbjct: 61 SLNCFYDINFNPCRICKNCEESEKNCFVDLIEIDAASHTKIENIKEVLDNIKYLPSKGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS++SFNALLK LEEPP HVKF+LATT+ K+P TILSRCL LK + Sbjct: 121 KIYIIDEVHMLSKYSFNALLKILEEPPNHVKFILATTELNKIPETILSRCLHLQLKEISE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I + L+ IL E I +E AL++++++++ S+RDAL+L ++A G+ + VS M Sbjct: 181 TDILYNLKKILKLEKIYYEEEALKIISKSSQHSMRDALTLAEKASILGENNILYNVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E + E+++ + + I W+ L+ M+ ++H++ + + Sbjct: 241 LGCISFMELIDLFEIISLNKKEKLIFFFKKIENKSINWDDFLINMILIVHKVLFFKFNDT 300 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + +L++ I D+ YY L GRKEL Y+ ++++ VE+T+LRA F Sbjct: 301 YKDPKKINTKKTKFYKLSKLISTNDLYKYYDIFLQGRKELSYSTEQKITVEITILRAFYF 360 Query: 360 HPR 362 Sbjct: 361 INE 363 >UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERI6_ARCB4 Length = 643 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 155/602 (25%), Positives = 252/602 (41%), Gaps = 46/602 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VLA K+RP+ F D++GQ + L+ L R+ HAYLFSG RG GKTS AR++AK L Sbjct: 9 RVLALKYRPKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALL 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T+ PC +CDNC+ + +D+IE+DAAS ++D +DL+++ +Y P+ RFKV+ Sbjct: 69 CSQGPTSKPCDICDNCKSANASKHLDIIEMDAASNRGIDDIKDLIEHTKYKPSSARFKVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLKTLEEPP VKF+LATTDP KLP TILSR F + + Sbjct: 129 IIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRFNKIAQSDV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 H L +ILN+E+I E AL++LAR+ +GSLRD L+L DQAI G+V+T +V MLG Sbjct: 189 VHHLSYILNKENIDFEQNALEILARSGQGSLRDTLTLLDQAIIFSKGKVNTTSVVDMLGL 248 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++ ++ E + L+ E E + EM L + + + L Sbjct: 249 IDPKMMDNIFSMILNK--EDITKLVKEL--EVYEVSQICDEMTIYLKDKMLSRDNKFDLL 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +++ L ++ L D + +T ++ + Sbjct: 305 LFD--------------------RFFRILSDAKQLLAINSDGTFVLILTFMKMIEATNLR 344 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + P T + ++++ + + Sbjct: 345 TIDDIINQVEKIEPKKELISEKTTPIIESSLVK--------------NPEIPQKEVIKEK 390 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 T + E + + + Sbjct: 391 VNTLIVEEETKIEEVTALDEVLIQTNNIIDLGITNSIETINYSTPFDELPITKPIENQKE 450 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 ++ + + E P ++ E D + +QL+ +L Sbjct: 451 EKIEEIKELEIEHISFESEVSFNPTQEVEIIPLEDESDKFLDLYNQLTAKVYDRDYSLGE 510 Query: 544 WKEE--------SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 E+ D + + + + GS VEL +++ Sbjct: 511 CFEKNFIFNGFSDDKLHIISYAQDEDRKLLFKYFGLIKAFAQDIFGSNVELDFKKEEATI 570 Query: 596 VR 597 + Sbjct: 571 LE 572 >UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax=Bacteria RepID=Q6KIL7_MYCMO Length = 720 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 131/413 (31%), Positives = 218/413 (52%), Gaps = 6/413 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RP+ F ++ GQ+H++T L N L+ ++ HAYLFSG RG GKTS+A++ A Sbjct: 1 MDYKALYRKYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAA 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE I +C+ C E +D+IEIDAAS V++ R+L + V+Y+P++ ++ Sbjct: 61 ALNCEHEIQKE--KICNLCVE-NLDNNLDIIEIDAASNNGVDEIRELREKVKYSPSQYKY 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKTLEEPP+H F+LATTDPQK+P+T++SR +F+ K + + Sbjct: 118 KVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRITL 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + QL+ +L +E+I AL L+A+ AEG LRDALS+ DQ + ++ + V + Sbjct: 178 PILEKQLQEVLTKENIRINKNALTLIAKMAEGGLRDALSIADQISIFSNNNITEKEVDEV 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 + + + + + + + V+ IN GI E L++ ++ ++ + + A Sbjct: 238 FSLVSIEDQIYFLNLIYKKDTTTVLRTINNYIESGINIEKLVINLIDIIRDFIVFNKTHA 297 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++EL I L+ +L ++ E+ +L+ L Sbjct: 298 SNLLEYLNE-EDLKEL--EIDIHFAYQTKDALMPLLSDLKHSEIPTRNFEIIILQLLHES 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R + E + + + A P T + Sbjct: 355 KRDEILEQNKKNSLSEFFKNEDTQPIHLADSKVKQKNENAIKFTAPTETFETE 407 >UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QBX8_SULNB Length = 666 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 158/547 (28%), Positives = 257/547 (46%), Gaps = 36/547 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP TF D++GQ+ V L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MS-LALARKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T+ PCG C +C + R +D+IE+DAAS ++D +DL+++ +Y P+ R+ Sbjct: 60 ALLCEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIEHTKYKPSSARY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP+ VKF+LATTDP KLP TILSR F K + Sbjct: 120 KIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIPQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LEHI+N E I +E AL+++AR+ GSLRD+L+L DQAI V V+ M Sbjct: 180 NLVLSHLEHIMNLEKIEYEKEALEIIARSGAGSLRDSLTLLDQAIVYSKNFVDVGTVTGM 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ +L+ +V+ + +++ I A E E +L Sbjct: 240 LGIIEPSLLEALLGNIVKKDTTKILEFIK--LASDYEAEMILD----------------- 280 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + + + P I+ +++ + + L D + + L + + Sbjct: 281 ---ELTLYLKELLLTGSGKLNPMIIERFFRVIAESKSLLALGSDGEFVLSLALFKMMEAL 337 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + ++ S + VP T S+V+ ++ Sbjct: 338 EIKDIDTMIRGLEK-------------ELKGVEVSEIMVSTPVPDLSTPSEVITITEEDI 384 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T++ + +A + + T + Q RP + AP + Sbjct: 385 LTPSQTESVQRSAFSAEKEEETTEPLPKTSPENTIKEQNRPEETVGRGAPTPTMKPDKQT 444 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + ++E + + +A + ++ ++ A + A + +L Sbjct: 445 VSEETTEQEQKSPETPVTEAPKAKEETQITAAPSLNAQRSTLNTDKFKELVSKIYDRNYE 504 Query: 541 LNAWKEE 547 L + E Sbjct: 505 LGSCFER 511 >UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 Tax=Fusobacteriaceae RepID=D1AJH2_SEBTE Length = 496 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 203/402 (50%), Gaps = 24/402 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQ H++ A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFEEIAGQGHIVKAIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAK 59 Query: 61 GLNC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G+NC GI+ PCG CDNCREI G +D++EIDAAS +++ R+L + + Y P G Sbjct: 60 GVNCLTNGISDHPCGTCDNCREIAAGISMDMVEIDAASNRGIDEIRELKEKINYQPVNGN 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ L+ Sbjct: 120 KKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEVDKIPDTVISRCQRYDFLPLN 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVS 238 + I L+ + +E+I + +L+L+ R +EGS RD+ S+ +Q + ++ + Sbjct: 180 MNDIIEMLKMVAEKENIKIDEESLKLIYRKSEGSARDSFSIFEQVASNFSGEEIDIEKTQ 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LG + D + + + + +++ GI E L + L Sbjct: 240 TALGVIPDKLLNEFLTVVSNGDKIGGIDFVDKLWEDGILIENFLKDFSYFLKENL----- 294 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + +I + E Y D+R+ + + Sbjct: 295 ----------------KREDSIGIDRTLSLISVIYFVLGEFRYEEDKRLLGYVLINEIFK 338 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + E ++ + P ++AP + Sbjct: 339 QEAPVVITEVRQEYKAAESAPKSTQEIPAGNTQIQETAPSPS 380 >UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S3_COPPD Length = 522 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 145/455 (31%), Positives = 226/455 (49%), Gaps = 22/455 (4%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RPQTF +VVGQ HV L L +I HAYLF+G +G GKTS AR+ AKGLNC Sbjct: 2 ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 ETGIT+ PC C++C+ I +G +D+IEIDAAS V++ R+L + V+Y PA+ R+KVY+ Sbjct: 62 ETGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSRYKVYI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDE HML+R +FNALLKTLEEPPE+V F+LATTDPQK+P T+LSRC +F K L +++ Sbjct: 122 IDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDEVF 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 LE++ E +++ AL+L+A ++G++RDAL+L +Q +G+VS + +L + Sbjct: 182 QILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLNVV 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 +D+ L L++ + + + + E G+E L M L+ R Sbjct: 242 EDEVILDLLKTAFA-DMDEAVERLAELMESGVEPMELFRTMKSLVRRSVFRN-------- 292 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + P ++ L + + + L + Sbjct: 293 -------------KPWPRDVALEMFRVLESYNFIMERTEFPAVALVALLNELRSKANLGT 339 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 E S + ++ E + + A + + Sbjct: 340 PKGGESAPLSEKNADKEKTRVAEKPQEPAAETQKENKHSEKREELANDVEAEAVKEATES 399 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 +K + S+ AA T + + + ++ Sbjct: 400 ESKREVSDAAATTVTAVEEKESSQDATDLQSWIEN 434 >UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteroidales RepID=C2MCK6_9PORP Length = 429 Score = 311 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 139/427 (32%), Positives = 220/427 (51%), Gaps = 8/427 (1%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RPQTF +++GQE + L + + G+I HAYLF G RGVGKTS AR+L Sbjct: 1 MSDNFIVSARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTSAARIL 60 Query: 59 AKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NCE CGVC NC+ R ++ E+DAAS V+D R L ++V P + Sbjct: 61 ARTINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDVYIRPQQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++KVY+IDEVHMLS +FNA LKTLEEPP +V F+LATT+ K+ TILSRC + K Sbjct: 121 GKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQA 236 + EQI QL + + E + ++PR+ +AR A+G +RDALSL D+ + + DG +S + Sbjct: 181 IPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQDGVISYEQ 240 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 L LDD+ + + +R + L++E +G+ L++ + + + + + Sbjct: 241 TLQTLNILDDEYYFYFTTYLYSGDYKRTLLLLDELLGKGVAMRQLIIGLADFMRNLLVAR 300 Query: 297 LSPAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL- 354 R LA+ I P + L+ + + +R+ VE+T + Sbjct: 301 TPETMQLFPYTGVHAERFATLAQQIHPLFLYKSISKLVSCERNYRSSQAKRLLVELTFMG 360 Query: 355 --RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + P + P + P + P+ + +P P + Sbjct: 361 ISEMCGAFKNATVAPPTAAPATPTPQESSVQAPQATYQAPPAATPKPSTAMPTPSAATPT 420 Query: 413 LAARQQL 419 ++++ Sbjct: 421 QDEKKRV 427 >UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z5_MYCS5 Length = 609 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 212/374 (56%), Gaps = 8/374 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RPQ F +++GQ+H++ L N +S +I HA+LF+G +G GKTS AR+ AK Sbjct: 1 MKYKSLYRKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + +C++C D+IE+DAAS T V++ R+L +NV P ++ Sbjct: 61 ALNCSHSEVRS--QICESC---PNQNSGDIIEMDAASNTGVDEIRNLKENVDQLPFESKY 115 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATTD QK+P+TILSR F+ + + Sbjct: 116 KIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISE 175 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QLE+ILN+E+I+ E AL L+A+ + G LRDAL++ +Q + ++ ++V Sbjct: 176 KQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRKN 235 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D+ + ++ + N V+ +N+ GI+ ++ ++ L+ + + + Sbjct: 236 FGIASNDEIIQVLNDLYSKNISDVLKKLNDLKLWGIDPFLFVLNLISLVKEYLLFRKTGD 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + + +L I + +L + +E++ L+ L + Sbjct: 296 DSFLNYYSEKE-LNDL--KINDSFAYRVSSSLYDLLINVKRTEYPFEIIEVSFLKLLDEN 352 Query: 361 PRMPLPEPEVPRQS 374 + + E + Sbjct: 353 DFIAMQNEEKQFKQ 366 >UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L148_THERP Length = 562 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 152/420 (36%), Positives = 212/420 (50%), Gaps = 12/420 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M L RK+RPQTF ++VGQE + L N ++L R+ HAYLF G RG GKTS ARLLAK Sbjct: 1 MQSGSLYRKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAK 60 Query: 61 GLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C CR I G VD+IEIDAAS V+D RDL + V+YAP R Sbjct: 61 AVNCRDADPWRRPCNQCGACRSIATGTAVDIIEIDAASNRGVDDIRDLREKVKYAPVELR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K Y+IDE H L+R +FNA LKTLEEPP HV F+LATT+P KLP T+ SRC +F + L Sbjct: 121 TKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQRFDFRRLP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-----VST 234 V+++ +L + E I L L+AR A GSLRDAL L ++ ++ Sbjct: 181 VDRMVERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLAVFASDGENEPVITL 240 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +LG DD+ L LV A+ + + R + L+ EAA G + L E++ + Sbjct: 241 ELARQVLGGSRDDRLLDLVTAIADRDAGRALRLVAEAADAGDDLHQLGRELVRFTRTLLY 300 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA-PDRRMGVEMTL 353 V+ + A LA+ ++ L + L LP + D ++ +E+ L Sbjct: 301 VRAGGSDPLLPPEA-----SALAQRFSLEELALVLRRLTGLDAPLPRSGIDPQLLLELGL 355 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + ++ P + A A TA + P A + P T+ Sbjct: 356 VESILLLDGSQRERTLAPSGATAVPAMTATPPRVVPAAPRPAPPPAASSQPAVSPTTSPA 415 >UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Candidatus Phytoplasma asteris RepID=Q2NK09_AYWBP Length = 653 Score = 310 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 222/477 (46%), Gaps = 13/477 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK+RPQTFADVVGQE ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 1 MSYLVLYRKYRPQTFADVVGQEIIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + I C C+ + D+ EID AS V++ R+L D QY G++ Sbjct: 61 AINCLSPIQGEAFCSCHFCQNFAKAN-TDITEIDGASYNGVDEIRELQDKAQYKAHAGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+L+ ++FNALLK LEEPPEHV F+L TT+ K+P TI SR F + L++ Sbjct: 120 KVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIFSRSQSFAFENLNL 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL I E++ A++ +A +EG +R+ALSL DQ A + ++++ V+ + Sbjct: 180 KNITAQLTKIAALENMFITEDAIKSIAYHSEGGMRNALSLLDQVSAYQNNLITSEDVANI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + +++ + + L++++ G + L+++++ + + Sbjct: 240 KGTVSASVIKKLFQNLLKKEATKTLQLLHKSIDSGKNIDILILDLIDAIKDYLICNAKNK 299 Query: 301 ALGNDMAAIELRMRELARTI----PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A+ I I + +TL+ +++L + ++ VE+ L+ Sbjct: 300 KYSKTSQ------LSQAQKILLLEETNHIDHFLRTLIKLQQDLKKSDQKKSLVEIAFLQI 353 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + H + + +Q + + +A + P ++ Sbjct: 354 CSLHSFQFQADLQEFQQFVTNKTKISNNNQALLELDETNAEEHY--EPTKPIQKKLENPP 411 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + + + P++ Sbjct: 412 FYKTEEIKSIQFTPIANKKTPKIEKIEYLHSTLKDLQPQNNSTISELTQQNNLPSQN 468 >UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQQ3_9BACT Length = 554 Score = 310 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 124/398 (31%), Positives = 189/398 (47%), Gaps = 4/398 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQTF DV GQ + + +S G + HAYLFSG RG GKT++ARL AK + Sbjct: 2 YLSLYRRYRPQTFQDVTGQNTAVEVVRRAVSRGNVGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G PC VCD+CR I +G +D++EID AS +V++ RDL +V A +K Sbjct: 62 NCSDRGKGGEPCNVCDSCRSISEGNSLDVVEIDGASNNRVDEIRDLKTHVGLASFSSPYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY++DEVHMLS +FNALLKTLEEPPE V F+LATT+P K+PVTI SRC ++ +E Sbjct: 122 VYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSRCQHIPFHSIGLE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +L ++ E + + +L +AR A+G LRD LSL +QA+A D V V ++ Sbjct: 182 DMVSRLRYVTELEKVKCDDDSLWEIARQADGGLRDGLSLLEQAMAVQDDGVDLSVVERLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + ++ E + + RG E +L + + + + Sbjct: 242 GGGSHGELCRWLDGFHERGEMGTLKDLEGMFLRGASVERVLDGLYVIFRNLWIASRWGEK 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + + + + + + + R + Sbjct: 302 GIDALGLSPWESRFLTRTVGRWNEPFLRDMMELTSSLMPQGRRGLRQDVLIGILMTRLVP 361 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 + P V + PV+ Sbjct: 362 SETPSSIKSPTVEPPNEEPVSAKPAPVSVPASDGEDPP 399 >UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax=Mycoplasma RepID=A5IZC8_MYCAP Length = 614 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 130/402 (32%), Positives = 209/402 (51%), Gaps = 18/402 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L RK+RP+ F DV GQ++++ L N + +I HAYLF G RGVGKTS+AR+ A Sbjct: 1 MSYKALYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFAN 60 Query: 61 GLNCETGIT--ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC + C +C+ +D+IE+DAAS V+ R+L D +Q+ P+ G Sbjct: 61 LINCYHNNDDYSKLCQICEE----NGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSVG 116 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +K+Y+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDPQK+P+TILSR +F+ + + Sbjct: 117 NYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRM 176 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + Q++ IL +E I ++ AL +AR A GS+RDALS+ DQA A G+G + V Sbjct: 177 SNDTLVKQIKSILEQEGIKYDAEALPYIARLAVGSMRDALSIIDQANAYGNGYIKFSDVM 236 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 G +D + ++ ++ E + L+ + GI+ + L+ +L + + + + Sbjct: 237 YSFGITSNDNLIKIINSLYNGKSEEALMLLQDLKNGGIDPKQLVESLLSIFKDFIIYEKT 296 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL-----PYAPDRRMGVEMTL 353 + L + Y +L + + +E+ L Sbjct: 297 -------YKDSLFEILTLDQFNTLEFDLRYAVNSSELLYKLVKEMYYASGNLFQLIELYL 349 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 ++ + +V Q + + ++ Q Q Sbjct: 350 VKMAREIEPKEEKKEQVIMQVDKDEKKARIDSINEILSQTQE 391 >UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DD60_9PROT Length = 487 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 127/391 (32%), Positives = 216/391 (55%), Gaps = 24/391 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L+ RI +AYLFSG RG GKT+ AR+ +K L C Sbjct: 2 VLALKYRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E GI+++PC C++C+ + R +D+IE+DAAS K+ED R+L+++ +Y P+ RFK+++ Sbjct: 62 EKGISSSPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIEHTKYKPSISRFKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + ++I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L+ +L +E++ E AL+L+ ++A+GS+RD+L+L DQAIA + ++ V MLG + Sbjct: 182 SFLQKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLLDQAIAYSNYNITLDKVVEMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + + + + + + ++ +I + IE + + L Sbjct: 242 NPEIISKIFKLIFDGDKKEIIEIIKQIKDYDIESIIDEIIL--YLKEAMFY--------- 290 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 +P +Q ++ + ++ + Y D + + R + Sbjct: 291 -------------GNLPLITMQRFFNIISDTKELIKYQNDNEFILSLMFFRMIEATKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + + + + + P P+ Sbjct: 338 IDDLIKSFEQSININSYQIKKVDIQKPNPEE 368 >UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=Wolbachia RepID=C0R4F2_WOLWR Length = 533 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 131/412 (31%), Positives = 216/412 (52%), Gaps = 2/412 (0%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 A K RP +F D+VGQ+ ++ L N L +I + L SG+ GVGKT+ AR++A LNC Sbjct: 4 ALKHRPSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCSL 63 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G PCG C+NC I+ D+IEIDAAS T ++D + +L ++ Y+P +FKVY+ID Sbjct: 64 GPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKVYIID 123 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNALLKTLEEPP VKF+LATT+ +K+P+TI++RC +F L + V +I + Sbjct: 124 EVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQRFDLHNIPVAKIVER 183 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLGTLD 245 L + +E + E AL+L+AR + S+R+AL L +QA+ DG +ST+ V+ +LG +D Sbjct: 184 LNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYSKDGAISTKNVTDILGLVD 243 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 D L+ A++E + ++ +++ ++A ++ +L + + ++ Sbjct: 244 KDIIFDLLGAILEGDLQKALSVFDKAVKT-ANPLSIFEGLLQTIQLVCRFLITKEIDNAV 302 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + R+++L+ ++ LL G +++ + + EM L+ Sbjct: 303 TEHEKNRIKDLSIKRSLIFFSRLWKMLLKGIQDIKTSTCNDVAAEMMLISLCYLSDLPSP 362 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + S P P + E+ Q + Sbjct: 363 EQVIKKVLSQNVEQGNRQGRPVAPSPSVIQVADYSDPKKYVESKQQPHSVIP 414 >UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977980 Length = 562 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 154/550 (28%), Positives = 250/550 (45%), Gaps = 26/550 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LA K+RP +F+D+VGQ + L+ L I HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MSSIALALKYRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE+G +TPCG C +C + R +D+IE+DAAS ++D + L++ +Y P+ GR+ Sbjct: 61 ALECESGPISTPCGSCASCVAALENRHIDIIEMDAASSRGIDDIKKLIEQTKYRPSFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ +FNALLKTLEEPPE VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQIPH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + +ILN+E +++E AL+++AR+ GSLRD L+L DQAI + +VS M Sbjct: 181 RLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCKNHIEVASVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + ++ ++V ++ E E +L EM+ L Sbjct: 241 LGIVDPQVLKEYFQGILHHQHDKVSGILQVLYE--YECEMILDEMMLFLK---------- 288 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + PP + + + L + L D + + ++ Sbjct: 289 ----------EKLLQRDSDFPPLLLDRFARILTESKSLLNLNTDGAFVLLLCAMKMQEAI 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + ++ A + + + Q P P SQ A + Q Sbjct: 339 KVKDIETMIEELENEIFGANQNKVLNSTSALSSLPSSPQNPQAPQTPADSQNPQAFESPQ 398 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A + + +R A + + + +K RW++ Sbjct: 399 APAQTPSLDSQKTLGALHFQTLIQKITDRNAEL---GEIFEKNVKFVEFSREKSLLRWQS 455 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + KE + + +L E + +D + P+ ++ Sbjct: 456 -VAQGEHKEKLREFGKIIVSLVREIFGANTHIEQVQDNIQDSNSQATQDSQSPQNLQNPQ 514 Query: 541 LNAWKEESDN 550 + + + + Sbjct: 515 AQSPQNQQEG 524 >UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VPV6_9PROT Length = 607 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 179/652 (27%), Positives = 277/652 (42%), Gaps = 80/652 (12%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ+F D++G E ++ L N + RI HA++ +G RGVGKT+ AR++A+ L Sbjct: 14 YRVLARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARAL 73 Query: 63 NCE----TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N E T +CR I + R D+ E+DAASRT V D R+L++ V+YAP G Sbjct: 74 NYETETIDRPTVDMPVEGRHCRAIAESRHPDVYEMDAASRTGVGDIRELIEGVRYAPIEG 133 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 134 RYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRF 193 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 D+ + L I +E A AL ++A+AAEGS+RDALSL DQA+ G+ + + Sbjct: 194 DITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQALVQKAGEAIGAADI 253 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH---RIAM 294 MLG +D Q L+ A + + + + L E G + ++ ++L L H R + Sbjct: 254 RDMLGLVDRTQTWDLLGAAMAGDAKTALRLFREQYDGGADAGQVMRDLLSLTHLLTRTLV 313 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 AA G A R + +A +P + + L+ +E+ APD E+ L+ Sbjct: 314 AGDEAAAHGQAGEADTERAQAMAHGVPLPALTRSWSLLMKALEEVQNAPDAAAAAEIGLI 373 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R + E AP A Sbjct: 374 RVAYAAGQPTPEEALKALGQAAPQAAAQ-----------------------------AAP 404 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 Q A +A S A T A + + AP + Sbjct: 405 QAAPQAAPQAAPQAAPSAERAPTGAATGPQGSWSPTGGQVAVAVNAAPDAGPHTAPDPAQ 464 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P++ +P IE A ++ + Sbjct: 465 PSPERPARPMLTAPSPAPSP----------------------TIETLDDIAALAGVKRDA 502 Query: 535 LVEQVALNAW--KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + + + + + + +L +AL G ++I D Sbjct: 503 RLREEIETCLIPVHLETGRLDVAVTEAAPKDLTG----RLGQALKAWTGRPWIVSI-VAD 557 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRPI 643 V T + ++I A+ + F A + ++RP+ Sbjct: 558 PGEVPT-----------IRGRRNQAIKANPVVNAALSAFPKARI--AAVRPL 596 >UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=3 Tax=Candidatus Pelagibacter RepID=Q4FNB0_PELUB Length = 557 Score = 308 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 128/390 (32%), Positives = 217/390 (55%), Gaps = 9/390 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + +VLA K+RPQTF D++GQ+ V ++N + ++ +AYLF+G RG+GKT+ AR++AK Sbjct: 4 NTKVLALKYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKS 63 Query: 62 LNCETGITATPCGV--CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC GI C C+NC I +D++E+DAAS+T V+D RDL++ +Y P + Sbjct: 64 LNCSNGIDNL-CKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTTAK 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+++IDEVHMLS+ +FNALLKTLEEPPE++KF+ ATT+ +K+P+T++SRC +F L + Sbjct: 123 YKIFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIK 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAV 237 ++ + I +E+ AL+L+ + +EGS+RDALSL D+A+ + D ++ A Sbjct: 183 SLELFDFIRKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRALLTLDKDKELDLAAA 242 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE---MLGLLHRIAM 294 + G D Q + L E + E V+ E +G+E + + + +L I Sbjct: 243 QKIFGYFDKSQLIDLFELIFEGKETEVLNTYREIYNQGVEPKIFINDFLELLYYFKNIDS 302 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + L ++++L+ + + L++Q + +EL ++ + +EM L+ Sbjct: 303 LNLDGNNFLL-NDEEFNKIKDLSEKVNNETLILFWQFTIKTLEELDIVSNQHLSMEMFLI 361 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVM 384 R + E + Sbjct: 362 RLIHLKSIKQESEKYKEDSKLLVESENQTS 391 >UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKU4_9PROT Length = 585 Score = 308 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 216/434 (49%), Gaps = 22/434 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQ+ + L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 4 SSEVLARKYRPSNFDELIGQDTIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE G++ PCGVC NC+ + R +D++E+DAAS K++D RDL++ +Y PA RFK Sbjct: 64 LICEQGMSHEPCGVCQNCKLAVENRHMDIVEMDAASSRKIDDIRDLIEQTKYRPASARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ + Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILSRTQHFRFKSIATK 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL++LAR+ GSLRD L+L DQAI V V+ ML Sbjct: 184 KIIDHLAHILNLEEIKYETDALEILARSGNGSLRDTLTLLDQAIIYSKNHVDVNTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D + L A+ + ++ E E ++ E++ L Sbjct: 244 GLVDPKFIMDLFSAVFAKDYASLVQYTKILED--YEAEMVVDELIAYLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYNQDALFSTLVLDRFFRILSDSKSLFSINADGSFVLSLIFFKMVEALR 341 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + Q + + + A + V E+ + ++ Sbjct: 342 IKEVDQMIESLQKEIKRPEISSINIEPLKRVQVEAVEPQDQVASTESIQEYYQEEDEMLH 401 Query: 422 VQGATKAKKSEPAA 435 + + E Sbjct: 402 QETHIPEPQPEMPN 415 >UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQ39_HIRBI Length = 619 Score = 307 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 174/547 (31%), Positives = 247/547 (45%), Gaps = 7/547 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP TF D+VGQE ++ L N GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 36 AYQVLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRIAHAFMLTGVRGVGKTTTARLLARA 95 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN P +C+ I + R D++E+DAASRT V D R+LLD V+Y+P Sbjct: 96 LNYSRDGVEEPSVQLSPVGRHCQAIMESRHPDVLELDAASRTGVADMRELLDGVRYSPVN 155 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F+L Sbjct: 156 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFNLAR 215 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQA 236 L + + L I +E L L++RAAEGS RDALS+ DQAI S +VS A Sbjct: 216 LTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVLDQAIVQSTGDEVSVDA 275 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L++A + + + N G E + L+ ++L + IA Q Sbjct: 276 VRDMLGLADRARVFDLLDAAIAGEHKVALEETNAQLQEGAEAQILMKDLLDAMAEIARAQ 335 Query: 297 LSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R ++LA +I Y++ LL G ++ APD + EM +LR Sbjct: 336 AMGESYVFAGPVEWTQRTKKLASSISNAQSARYWKLLLQGYEDCARAPDPNVAAEMAVLR 395 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 A + Q+ P+ P A Sbjct: 396 LAAAAALPSPEDAARMLQNGPSGNNPNGGGPSGGGAYSNGDPGPGAQSYQANGGGGARAQ 455 Query: 416 RQQLQRVQGATKAKKSEPAAATR-ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 V A K +E A A + + + Sbjct: 456 SGAQSVVARAVPDKYAEAAPGPVLGSLNQICAALQGDKQIHLLYDVEHYVRPAEVRYGLF 515 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Y PV Q + + + + E R ++P+ Sbjct: 516 TYAAAPGIPVDFQMRMKNWLEDKTGVEWNVDLGHSTKESLEEIRVRQEKERVAEVSAIPR 575 Query: 535 LVEQVAL 541 + E + L Sbjct: 576 IAEALEL 582 >UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=Mycoplasma penetrans RepID=Q8EUW0_MYCPE Length = 804 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 118/473 (24%), Positives = 234/473 (49%), Gaps = 11/473 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + RK+RP +F +++GQ+ ++ L+N + + HAY+FSG +GVGKTSIA++ +K Sbjct: 3 NKIAFYRKYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFSKV 62 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC C C+NC I Q + VD++E+DAAS V + R+++D + Y P+ ++K Sbjct: 63 LNCLNLKDGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVLKYK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HMLS ++N LK +E+PP+++ F+ ATT+ K P TI+SRC +++ L+ Sbjct: 123 VYIIDEAHMLSNAAWNTFLKLIEDPPKYLVFIFATTESYKFPPTIISRCQRYNFLKLNNS 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +++ L+ I +E I E AL +A A+GSLRDA SL DQ + + + + + + Sbjct: 183 ELKECLKSIAKKEKIKVEDNALNKIAELADGSLRDACSLIDQLDSYTNSDIKIEDIYNVF 242 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G LD ++ ++L++++ +N E+++ INE +GI++ L ++++ LL+ + + + Sbjct: 243 GILDVNEKINLLKSVWNSNVEQIINKINEYEVKGIDFYQLSIDLINLLYDKLVYERTKNV 302 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L + + + EL P I + ++ + + + +++ + Sbjct: 303 SLLKYLPSEQTNFLEL----QPKFIIKCLEVWQDNLNKIKTSSNPKFYFQLSCFESCKLF 358 Query: 361 PRMPLPEPEV------PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 V + + + + P E ++ + Sbjct: 359 EFEFDTNLTANSYVVKNETELKEQLEQKVKPTKKETVKVELTEKNKPDKLKEEIKAEEIK 418 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 + + K + E + P+ + + + +++ ++ + E Sbjct: 419 VKPSKKEEIVEEKVIEQEKENNSAQEPILDTSNFKQVKLSESMKVVQIKGKPE 471 >UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S640_9ACTO Length = 765 Score = 306 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 158/561 (28%), Positives = 231/561 (41%), Gaps = 35/561 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP TFA+VVGQEHV L N + GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPATFAEVVGQEHVTAPLVNAVDGGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T+TPCG C +C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEQGPTSTPCGTCGSCVALAPDGPGSLDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPPE + F+ ATT+P K+ TI SR + + + Sbjct: 120 RFKVYIIDEAHMVTTQGFNALLKVVEEPPEFLVFVFATTEPDKVLSTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R LE E + EP L+ RA GS+RD+LS+ DQ +A + V+ ++ Sbjct: 180 PPTTLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEGVTYKSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG DD ++A+ + V ++ G + ++L L + ++ Sbjct: 240 VGLLGVTDDALLDETIDALAAHDAPGVFRAVDRVVEAGHDPRRFATDLLDRLRDLILLDA 299 Query: 298 SPAA------LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 P A L + M A + + T+ G E+ R+ +E+ Sbjct: 300 VPDAGGNGNGLLDCPPDRLDLMSSQASALGSATLSRMADTVHAGLTEMRGTTGPRLLLEL 359 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 R L + A + +P PE + Sbjct: 360 VCARMLLPGTDGSAAATLQRLERLERRMSIAGEHAGRPVAEPAVLGAPV-RESRPEPAAA 418 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 A Q + V+ + + A + A RP P E A A Sbjct: 419 PPPADQPGRPVREFVRRSQVAAQAPSVPAAPAQPAPRPAPEPPRAAPERPEPPRPEPARA 478 Query: 472 KKEAYRWKATTPVMQQKEVVATPKAL------------------------KKALEHEKTP 507 + A R A + + + Sbjct: 479 EPVAARPPADDGWPETTPPGSGAPPRPPAPAATPPTPAATPPAAAPAAVGEPRRAPVAVG 538 Query: 508 ELAAKLAAEAIERDPWAAQVS 528 E L E + + W Sbjct: 539 EPDIPLPPEPTDDEDWPHPAQ 559 >UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 Tax=Rhizobiales RepID=B2ICM3_BEII9 Length = 651 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 182/659 (27%), Positives = 289/659 (43%), Gaps = 60/659 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP F D++GQE ++ L+N L RIH AYL +G RGVGKT+ AR+LA+ Sbjct: 29 YLVLARKYRPSRFEDLIGQEAMVKTLSNAFDLDRIHQAYLLTGVRGVGKTTTARILARAF 88 Query: 63 NCETG----------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 N E T +C+ I + R VD+IE+DAAS T ++D R+++++ + Sbjct: 89 NYEVPAENGQPAIEKPTVHMDRFGVHCQAIIESRHVDIIEMDAASHTGIDDIREIIESAR 148 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P R KVY+IDEVHMLS+ +FN LLKTLEEPPEHVKF+ ATT+ K+P+T+ SRC + Sbjct: 149 YRPVSARVKVYIIDEVHMLSKQAFNGLLKTLEEPPEHVKFIFATTEIDKVPITVRSRCQR 208 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 F L+ ++ + L + +E++ E AL L+ARAAEGS+RDALSL DQAIA G GQ Sbjct: 209 FDLRRIEPAVLIDYLASVCAKENVLIEREALGLIARAAEGSVRDALSLLDQAIAHGTGQA 268 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 +S + AMLG D + + L EA++ + + +A + G + +LV Sbjct: 269 DPHSSAQPISATDLQAMLGLADRARIIDLFEAVMRGDMAKALADLKNLHDCGADPAQVLV 328 Query: 284 EMLGLLHRIAMVQLSPAALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 E+ +H + ++LSP R +A T+ + +Q L G +E+ + Sbjct: 329 ELAEFVHFVTRLKLSPHTFDAAATPEELSRGGAMAGTLSVMVLTRAWQILTKGLQEVKDS 388 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP---TAVMTPTQVPPQPQSAPQQ 399 P +M L+R P + + QP Sbjct: 389 PRPLACADMVLVRLAYAADLPTPDVVLRQLAKTPPSPHGRDGSTDAVSGSRVQPSLPSAS 448 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 P++ P TS L A+ Q S P+ L+ ++ Sbjct: 449 GPSLGSPLVTSSRLGAQAATQAASHMAPLAVSAPSLQPGLAQAPAIRLQSFGALVALAGE 508 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + R++ T + A ++ +A + Sbjct: 509 KRDIQLKTALERDVRLVRFEEGTIEFALAPGASPQLAQTLMRRLQEWTGTRWMVAIASET 568 Query: 520 RDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML 579 + L+L + E+ A + + + + +ALS Sbjct: 569 SGG----AAALTLKEQAEKQAAAVRQGIEADPL-------------------VRKALSQF 605 Query: 580 KGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 G+ + + + ++ PA E A +S +D+++ F E+DE+ Sbjct: 606 PGAQI-IAVRPNEAPATV----------PEDQPFAADSAESDDDV-AFPDQF--EMDED 650 >UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Tax=Helicobacter RepID=C5ZV42_9HELI Length = 586 Score = 305 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 152/587 (25%), Positives = 245/587 (41%), Gaps = 25/587 (4%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + + LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A Sbjct: 1 MEHNEALALKYRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + L CE G A PCGVC NC R +D+IE+D AS K++D RDL++ +Y P Sbjct: 61 RALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNM 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+++IDEVHML++ +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K Sbjct: 121 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I L++IL++E+I ++ AL +L R+ GSLRD L+L DQ I + ++ + Sbjct: 181 ISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITADSC 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + MLG ++ L E + + + E ++ I + E E LL EM L Sbjct: 241 ANMLGLINPQSLNMLFEEIFKKDKESLLKHIEGFSE--YECEMLLDEMAIFLKEKL---- 294 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +R T I +++ + ++ L D + +++ + L Sbjct: 295 ---------------LRGEDTRYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKML 339 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + + + T + T+ Sbjct: 340 EALKIQEIDKAIETLEKGLTLPSKENQTKESKQTFENTPTNPTNTIKENPIKPLEETHTN 399 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 E+ V + KE + Sbjct: 400 HFTPTPNGADLFALLVQKIYERNFELGEIFEKNIHFVSYENGILVW-ETTAQDSDKERLK 458 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 T + + + K + E + + + S + Sbjct: 459 NSYTNIIKGFVLEIFGMQTQIKPIAKEPKISQTPLTNTQESIQKQEIQKASDSINTPNTK 518 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 N+ + N +++ + + + + + ++ G + Sbjct: 519 PQNTNSTESLELNTTLSTPKTTTQSAETQPTHKSIQDEVNEALGLPI 565 >UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=Rickettsieae RepID=A5CF91_ORITB Length = 559 Score = 305 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 132/420 (31%), Positives = 218/420 (51%), Gaps = 14/420 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP+T +++GQE + L + G + AYL SG RGVGKT+ AR++A Sbjct: 7 NYVVWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAARIIATT 66 Query: 62 LNCETGI----TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +NC + T C C++C +E D+ EIDAASRT V+D R ++D+ +Y P Sbjct: 67 INCLQPVVTSKTIFACTKCNSCIAMENNSHPDINEIDAASRTGVDDVRTIIDDSEYKPLI 126 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++K+++IDEVHMLS+ +FNALLK LEEPP H F+ ATT+ K+P+T++SRC +F L+ Sbjct: 127 SKYKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQKFDLRR 186 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ------ 231 LD+ I L +I+ +E+++ L+ +A A+GS RDA+SL +QA A Sbjct: 187 LDINNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAVSLLEQARALAQNIADTASS 246 Query: 232 ----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +S V M G L + L+ A+ E N E+ + ++ + G ++ +L Sbjct: 247 DVVVISLNTVEQMCGVLCLGKLTDLLSAIAEQNAEKGINIVTDLYISGTDFIVCSQNILD 306 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 L+ + V+ + A+ + L+ + + + + +Q +EL + + R+ Sbjct: 307 LIGYLIKVKTIDGYTESIYASHNNILNSLSMKLSLSRLTVLWQIFSKSIQELKISHNTRL 366 Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 E+ +++A+ + Q+ A T V P P+S P L Sbjct: 367 CFEVVVIKAIYSFSLPTPIDALRQLQNELTDAKTNVDNAANSPAVPESLPASMNKYELQS 426 >UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Chlamydiaceae RepID=B0B7Q2_CHLT2 Length = 466 Score = 304 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 142/453 (31%), Positives = 219/453 (48%), Gaps = 13/453 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV +R++RP F++++GQ+ V++ L N L L R HAY+FSG RG GKT++AR+ AK Sbjct: 3 SYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKA 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PC C C+EI G +D+IEID AS +ED R + + V + P++ R+ Sbjct: 63 LNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FN+LLKTLEEPP HVKF LATT+ K+P TI SRC + LK + Sbjct: 123 KIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRISE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I +L I +E AL +A+AA+GSLRDA SL D + + + + Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKA 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +D L EA+ N E+ + +++A G+ L ++ L + Q S Sbjct: 243 LGILSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSK- 301 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +A + L + + A + +E ++R L + Sbjct: 302 -----------QFHSVATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIY 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 R + + AP + T +++ P +A Q Sbjct: 351 SRPTFSQLVSQIRQPAPTQIRPIPTASELESCPPQIKSSNTEETKSSPQPTAVAKLSQGS 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASV 453 + A+ K E P + ++ Sbjct: 411 LLTAASSQTKKETIHQETPPPSLDKISPSESAA 443 >UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7N2_MYCHP Length = 667 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 128/441 (29%), Positives = 222/441 (50%), Gaps = 17/441 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP+ F D+ GQ+H++ L N + ++ HAYLF G G GKTS A++ A + Sbjct: 7 YLALYRKYRPKIFDDIKGQDHIVITLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTI 66 Query: 63 NCETGITA--TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + PC C R +D+IEIDAAS T ++D R+L + +++ P + ++ Sbjct: 67 NCLHNQSDILKPCEECIK----NVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNALLKT+E+PP H+ F+LATTDPQK+P TILSR +F+ K + + Sbjct: 123 KIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 E + QL+ I N+E+I +E A+ ++A+ GSLRD+LS+ D + + + V Sbjct: 183 ETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G ++ D + L+ M + + + L E ++GI+ L+ +++ +L + + Sbjct: 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTR 302 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++ ++ I Y +TL+ + + E+ LL+ F Sbjct: 303 DQSL-VSTDFKILLQI---KIDDVKAHYYIETLIDQLHSIAISDSPEDYFEILLLKLCNF 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ ++ A + + Q + A + + +S Sbjct: 359 L------SPKEEYKNSAVMPKISNEEFNNFNSQEKQAINKNNIYKSLDLSSIANGFNANN 412 Query: 420 QRVQGATKAKKSEPAAATRAR 440 +Q ++ +E A + Sbjct: 413 STIQNSSDNNSTEDLANNSKK 433 >UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0ASK9_MARMM Length = 606 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 184/566 (32%), Positives = 267/566 (47%), Gaps = 14/566 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP TF D++GQ+ ++ L N + GRI HAY+ +G RGVGKT+ ARL+A+ L Sbjct: 32 YQVLARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARAL 91 Query: 63 NCETGITATPC----GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N +T P +C I + VD++E+DAASRT V D R++L+ V+YAP Sbjct: 92 NFQTDGIDAPSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIREILEGVRYAPVSA 151 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPPEH KF+ ATT+ +K+PVT+LSRC +F LK + Sbjct: 152 RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRI 211 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASGDGQVSTQ 235 D E + L+ I E + E L L+ARAAEGS+RDALSL DQAI + DG VS Sbjct: 212 DREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLLDQAIVQGSDEDGPVSAP 271 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + MLG D + L L+E + +A ++ G + + ++L +H A V Sbjct: 272 QIRDMLGLADHARVLDLLEQTLTGKTADALAELSSLHDAGGDPVVITRDLLDYVHATARV 331 Query: 296 QLS-PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + P A + A R+ LA + ++ LL G ++ APD EMT+L Sbjct: 332 KAAGPGADLGEAADTVARIVTLAEGQTLGQLTRMWKILLTGLDDVRNAPDALAAAEMTVL 391 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R LP PE + A + + P A A Sbjct: 392 R---LASAASLPPPEDAARLLAGMPRATSPASGAGEAPGKPEPAPASATGSASAAMDRDA 448 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A + A + + A A A ++ L D V + A K Sbjct: 449 AAHRALSAPEAVA-QVEQDAPAISGPQTWEALMDLLREKRDIGLQSDVERYVRPAVFKPG 507 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 ++ ++ + + + L+ E+ LA ++ L Sbjct: 508 SFTFQPIEDAPRDLAQRLSRRLLE--WTGERWMILADGSLEGGETWSERRLRLKAERLEA 565 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQ 560 A+ A + +R Q Sbjct: 566 ARHDPAVTEVMRLFPGAEIVKIRDPQ 591 >UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUB2_GARVA Length = 771 Score = 303 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 133/492 (27%), Positives = 225/492 (45%), Gaps = 13/492 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ V L L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC+ G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCKEGPTSKPCGKCQSCKDLATGGSGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 237 E + L+ I +E I + L+L RA GS+RD LS+ DQ I S DG +S + Sbjct: 180 PPEVMGPYLQDICKKEGIQAQKGVLRLAMRAGGGSMRDTLSVLDQLMIGSDDGVISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + +++A++E +G ++ ++ + G + + ++LG L + ++ Sbjct: 240 VALLGFTPSNLIADVIDALIEKDGAKLYEVVQKVVVGGFDTRKFVEDLLGRLRDLLLLVS 299 Query: 298 SPAA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + LG+ ++ + + + + + + A RM +E+ Sbjct: 300 AGPNCAKNLLGDLSPEDMQDLQRQSSQLTLRSLSKMAEIVNNAFAGMANAVSPRMNLEIL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP----PQPQSAPQQAPTVPLPET 408 + R LA + + + +A ++ + P Sbjct: 360 MARLLADMQSGTTAQEPFSKATNQSLAKSSSHPASSARHFIGSNSAVNSVNPVNPVNPVK 419 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 ++ + + A + E ++ + Sbjct: 420 IAEAPSVILDDKSEINNNTQANWSTATVEKQTTQELDVDETWDNLVKNLPDDVREYVERD 479 Query: 469 APAKKEAYRWKA 480 K A Sbjct: 480 RVPKVRLDDGNA 491 >UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylobacter RepID=A7ZDZ3_CAMC1 Length = 554 Score = 303 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 171/580 (29%), Positives = 267/580 (46%), Gaps = 32/580 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+ F +++GQE V +L + L R+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALV 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G T+ PC VC C + R +D+IE+DAAS K++D R+L++ +YAP R+K++ Sbjct: 62 CEKGPTSRPCEVCAQCVMANESRHMDIIEMDAASHRKIDDIRELIEQTKYAPTAARYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + +I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHFRFKQISRYEI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL++E +++E AL++LAR+ GSLRD L+L DQAI G G ++ +V+AMLG Sbjct: 182 VKHLEFILSKEGVSYEREALEILARSGGGSLRDTLTLLDQAIIYGAGNITKSSVAAMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++E + A+ + L+ E E E ++ E+L L + Sbjct: 242 LDPSRIEQIIEHVANADKNAIRVLVTELET--YEPEMIIDEILANLKQ------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R + + +++ L + L + D + + L + Sbjct: 288 --------RFLDNDPKFSLLIYERFFRILAQAKSMLSVSSDNGFVLMLMLFMMIEALNLQ 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E + VA + Q P+T + A+ + + Sbjct: 340 DIDEAIKLAKIEPSVAVIEPKAGM--------SEQILAVKEAPKTPYEQFVAKIYDRSFE 391 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 K + + + ++ V + K+ A T Sbjct: 392 LGEIFKNHISFSFLNENELGLIVNATGDELAFFKKSWGVMHEILHTIFGKKIKIVNAKTQ 451 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + K TP + E+A A + E+ A ++ L V +A Sbjct: 452 ISAPKPEPQTPPQEPQDKYSYLDDEIAKIKARQQNEQKDEPASKPEVVLETRVNTLAQPQ 511 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 + + + L S L + + + EA + L G Sbjct: 512 -NDFAKELMSLSQSKSPEELKKQREEGVIKEA-NRLFGQP 549 >UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and tau n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3190A Length = 724 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 199/388 (51%), Gaps = 11/388 (2%) Query: 1 MSYQV-LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS L R+ RP+TF+DVVGQ HV+ L N + ++HHAYLF G+RG GKTS+A++LA Sbjct: 1 MSAGPSLYRRHRPRTFSDVVGQTHVVRTLRNAVERDKVHHAYLFVGSRGTGKTSMAKILA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCGVC +C I +D+IE+DAAS V+D R+L D V YAP G Sbjct: 61 ACLNCERGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY++DE HMLS ++NA LKTLEEPP H F+LATT+ K+ T++ RC +F Sbjct: 121 RYKVYILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCHRFDFTRP 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-------DGQ 231 +VE+I L + ++E IA +A+ L+AR A GS RDAL +Q G + Sbjct: 181 NVEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAE 240 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 +S + V A+LG D + ++A+ + + + G + L+ E+ Sbjct: 241 ISVEDVLAVLGVADAEALFGALDAVSAHDARAALLAVARLVDAGRDAGGLVRELEAHARE 300 Query: 292 IAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + VQ+ A + R+ A + D+ L L R+ + Sbjct: 301 LLAVQVLGEVPAELRLTPERDARLAAQAAQLGRQDVVRLLDLLSDALDALANGAQARIQL 360 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAP 377 E+ L++A A Sbjct: 361 ELALVKAAAPEVDPSTRALLARIDRLEQ 388 >UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601S8_MYCH2 Length = 726 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 115/403 (28%), Positives = 213/403 (52%), Gaps = 8/403 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y RK+RP+ F+D+VGQ+ +L +L N + G HAYLFSG G GKT++A++ A + Sbjct: 12 YIAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI 71 Query: 63 NCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C +D+IE+DAAS V++ R++++N P +K Sbjct: 72 NCTHKTDLIEPCQNCIK----NFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS +FNA LKTLEEPP+H+ F+LATT+ K+P+TILSR +++ AL + Sbjct: 128 IYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALKED 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I H+LE IL +E I +E AL+ + ++GSLRDA+S+ +Q G G V+ + ++ + Sbjct: 188 EICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATFGSGYVNQKNINELF 247 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G ++ + ++ V A+ A+ + ++ + + + ++ L ++ L+ + + + Sbjct: 248 GLVNKEILVNFVNALFLADSKISYEILEQISFQSKNFQLFLESLINLVKEWIIWKSTKTN 307 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L I + + K++ +A + + +E+ ++R L+ Sbjct: 308 ELLEFYSNFD-LENL--KISQDFAFKFLEIAFSSLKDINFADFQNLTLEIFIMRILSLSN 364 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 + + + + P ++ + + + P Sbjct: 365 LEISDQNNIKFKKIEENKVDKIDIPEKITEKVSEKVSEIKSTP 407 >UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 Tax=Rickettsiales RepID=Q2GI84_EHRCR Length = 505 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 203/385 (52%), Gaps = 2/385 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S A K+RP F D++GQE ++ L N L +I + L +G GVGKT+ AR+++ Sbjct: 12 STMSFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMC 71 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC +G T+ PC C NC I+ D+IEIDAAS T +ED + +L+N +Y P +FK Sbjct: 72 LNCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFK 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLK LEEP +VKF+LATT+ +K+PVTI+SRC +F + + + Sbjct: 132 VYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTD 191 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++ L+ + +E+++ + +++L+A A+GS+R+ALSL +QA + +S ML Sbjct: 192 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEML 251 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + L ++E ++ N + EA +L ML +++ I ++ Sbjct: 252 GYVSRHTLLEIIEPLIIGNATEALNKFEEACNS-YNSVIILDNMLQIIYEICYFSITKKD 310 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +I ++ + + PT + +Q L G +E+ + + M ++R Sbjct: 311 NSTSDNSIITYIKNE-KILSPTFLSRLWQMLFKGIQEVKSSSCIKQAANMLIIRLCYLSS 369 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTP 386 + Q Sbjct: 370 LPSPKQIIDKIQGKINNTSDINRKA 394 >UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Leuconostoc mesenteroides RepID=Q03ZG9_LEUMM Length = 575 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 148/588 (25%), Positives = 259/588 (44%), Gaps = 26/588 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L R +RP++F D+VGQ+ + L N ++ + HAYLFSG RG GKTS A++ A+ Sbjct: 4 AYQALYRVYRPRSFDDMVGQKIITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFARE 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +N T + D+IEIDAAS V++ R++ D YAP +K Sbjct: 64 VNGIAPETDD-------------SQIPDIIEIDAASNNGVDEIRNIRDGANYAPIESEYK 110 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+P TILSR +F K +D + Sbjct: 111 IYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRIDND 170 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ IL +E I+ + AL ++A AEG +RDALS+ DQ +A G V+ + + Sbjct: 171 TIQARMAEILQKEGISFDDDALHIIANVAEGGMRDALSILDQVLAFGADHVTLENALQVT 230 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G+ Q ++ ++ + + E + +++ G + + ++LG+L + + +++P Sbjct: 231 GSTTASQLVTYLQQVSNYDTESALQTLHDILLEGKDAVRFVADLLGVLRDVMLAEVAPN- 289 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 A ++ L + + IQ TL +K+L + +E+ ++ P Sbjct: 290 -LIKTTAPLADLKALTIKLGTSRIQQMMVTLDDIQKQLLQTMQSDVYLELLTVKLSMPEP 348 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P + + + ++ P E T + A + + Sbjct: 349 EQTVPAKQSSNVIKEKPQNIDDIVK---ASKNTEVHEEQVVEPAIEKTPVEVPAVENAEY 405 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + ++ A A + A + A Q A+ A Sbjct: 406 EDLLVRTGQNAVFAVLIAAKRDALARVKNAWSDLLRQFNVTQQAMLTIAEPVAASEQAVV 465 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA-IERDPW----AAQVSQLSLPKLV 536 + + + + I +D W A+ V++L + Sbjct: 466 LAFDYPVLLEQALHDATLQNHLVQQLQSQNLPSELVFISQDEWTSDRASYVNKLKTGETP 525 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + + + ++ N + ++ Q N K+ L G + Sbjct: 526 QIQLEDVPRVKAANLSAIPTKTPQESSNKE---LKIVSEAKELFGEDL 570 >UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 Tax=Ammonifex degensii KC4 RepID=C9RAG1_AMMDK Length = 427 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 146/384 (38%), Positives = 208/384 (54%), Gaps = 18/384 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L R WRPQ FA VVGQ HV L N L++GRI HAYLF+G RG GKTS AR+LAK LN Sbjct: 5 QALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAYLFAGPRGTGKTSTARILAKALN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T PC C C I +G +D++EIDAASR +++ R+L + V+ +P R+KVY Sbjct: 65 CLQGPTPVPCDTCPQCLSIMEGTSLDVLEIDAASRRGIDEMRELRERVRLSPVHSRYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+ + NALLKTLEEPP V F+LATT+P K+PVTILSRC +F + L I Sbjct: 125 IIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRCQRFDFRRLPTALI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + + E AL+LLA+AAEGS+RDALSL DQA+A +G++ V+ +LG Sbjct: 185 EEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAEGELRAIDVADLLGK 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ + + + + L+NE RG + + +++ L Sbjct: 245 VPSQALEEMLTYLQKGDLAGALRLVNEIEERGKDLNLFVRDLILRLR------------- 291 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 I +RE P+ + L ++ +P + + +E+ L+R L+ Sbjct: 292 ---EEILRHLRE--ERKAPSWLLRSLAALHQALVDMRLSPLKSLTLELALIRLLSTEEGR 346 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPT 387 P V + +P Sbjct: 347 PPSLERVKALWPDVLQFVKEASPR 370 >UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 Tax=Clostridium botulinum RepID=C3KSA4_CLOB6 Length = 472 Score = 301 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 115/384 (29%), Positives = 208/384 (54%), Gaps = 5/384 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP+ F DVVGQ L N + G I HAYLF G RG GKT+ AR+ AK +N + Sbjct: 2 LYLKYRPRFFKDVVGQGENTKILLNQIRTGHIGHAYLFCGNRGSGKTTTARIFAKAVN-Q 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 P + ++I+ G +D++E+DAAS +ED R++++ QYAP+ +++V++I Sbjct: 61 HNKNGEPLDNELS-KKIDAGNCIDIVELDAASHNGIEDIRNIIEQAQYAPSECKYRVFII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS + NA LK LEEPP++V F+LATTDPQKLP+T+LSRC +F K +DV I + Sbjct: 120 DEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQRFDFKRIDVTDIFN 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L++I E I + ++L+L++ A+G++RDA+S+ DQ +++ V+ +LG + Sbjct: 180 RLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTM--EEITYSNVTTLLGIMI 237 Query: 246 DDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 ++ ++ ++++ + + LIN+ + L+ ++ + ++ ++P Sbjct: 238 EEDIRNIAFSIIKKDTISALQLINKAVMQNKKDANQLMKDLQKYFRNVLVLAINPKTEIA 297 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + + M L + + ++ Y + L + Y + +E+ ++ + + Sbjct: 298 TIEEEKQVMINLGKQVHKENLIKYIELLQEKINDSKYTYNNLTLLEVAVIELVGYKTEEE 357 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQ 388 + + + V Sbjct: 358 KISDIIKKVLKSTNTNPVVANNCS 381 >UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK0_9BACL Length = 569 Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 205/389 (52%), Gaps = 18/389 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L RK+RPQTF D+VGQ H+++ L N + +I HAYLF G+RG GKTSIA++ A + Sbjct: 2 FQALYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 N I Q VD+IEIDAAS V++ RD+ + +++ P G++KV Sbjct: 62 NGNE---------------IYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKV 106 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TILSRC +F K L EQ Sbjct: 107 YIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFEFKNLSQEQ 166 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +L++I EE++ E A++ +A A+G LRDA+S+ DQ +++ + + Sbjct: 167 LIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYA-EEITLNHILEVTS 225 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ +D L +++ + + + NE A+ + + LL +++ + I + + Sbjct: 226 SISEDDILEFYRGLLQGDVTKSLLKYNEFVAQAKDTKLLLNDLINVTRDIVVYKNLKD-- 283 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 A ++ ++ + L + + ++ + +++ +++ + Sbjct: 284 TKHTAYNVEKIVTEIDSVSFDYFYKIIEYLSQTEQHIRFSTEYMSYMQICIVKICSKEEG 343 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPP 391 + + + + + ++ Sbjct: 344 INQNNSTIGSGQNSMTSSRNIELENRIKV 372 >UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Leuconostoc citreum KM20 RepID=B1MVT7_LEUCK Length = 604 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 160/542 (29%), Positives = 255/542 (47%), Gaps = 21/542 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RP+TF D++GQE + L N + + HAYLFSG RG GKTS A++ A+ Sbjct: 1 MAYQALYRVYRPRTFEDMIGQEVITQTLKNAIETHQTGHAYLFSGPRGTGKTSAAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N T + D++E DAAS ++VED RD+L NV YAP F Sbjct: 61 EVNGIAPETDD-------------SQISDIVEFDAASNSRVEDMRDILSNVDYAPIEAEF 107 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+PVTILSR +F K +D Sbjct: 108 KVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRFEFKRIDG 167 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L +L ++HI + AL+++A AEG +RDALS+ DQ IA G V+ + Sbjct: 168 QAIAAHLADVLKQQHIDFDQDALRIIANVAEGGMRDALSILDQVIAFGTDTVTVDNALQV 227 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+ Q + + A+ + + L+++ G + + + +++GLL I + ++P Sbjct: 228 TGSTTTTQLMQYLTAVTNSQTPEALKLLHDILVAGKDAQRFVSDIIGLLRDIMLANIAPE 287 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT---LLRAL 357 + + +R LA+ + IQ L +K+L + +E+ L + Sbjct: 288 LIKSTAP--LNDLRTLAQQLNSQQIQAMMGELDDIQKQLLQTMQSDVYLELLTVKLGMMI 345 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV-LAAR 416 R + + +P ++ PT S Q T + E T ++A+ Sbjct: 346 QGDQSHTESTQHATRNTSSFASPESLNDPTVTTQPVSSDTQPDTTTVIAEPTQNEGVSAQ 405 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + L+ K +N +L R + + A Sbjct: 406 ENLEATHDTVKPIAQSSQYDESEAVSHNNSLARTGQLAVFAILQAAKRDTLSRSKSTWAT 465 Query: 477 RWKATTPVMQQKEVVATPKALKKA--LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Q +A+P A + + P L + + + ++ A + + +LP Sbjct: 466 LISTFNVAHQALLTIASPVAASQEGLVVAFDYPALLDQALKDVVLQEKLIAALREQNLPT 525 Query: 535 LV 536 + Sbjct: 526 AL 527 >UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 Tax=Campylobacter RepID=B9KFI3_CAMLR Length = 510 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 205/387 (52%), Gaps = 22/387 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+TF ++VGQ V +L L R+ HAYLFSG RG GKTS AR+ ++ L Sbjct: 3 QALAIKYRPKTFDELVGQSTVSISLKYALENNRLAHAYLFSGLRGSGKTSSARIFSRALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PCG C C G +D+IE+DAAS +ED ++L++ V+YAP+ RFK++ Sbjct: 63 CENGPNANPCGKCSQCVSSLNGSNIDIIEMDAASHRSLEDIQELIEQVKYAPSMARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ + NALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + ++I Sbjct: 123 IIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQISQQEI 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL +E I++E AL+L+AR+ GSLRD L+L DQAI + TQ ++AMLG Sbjct: 183 LKHLEWILEQEKISYEKEALKLIARSGNGSLRDTLTLLDQAIVYCQNHIQTQKITAMLGF 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +A++ ++V + E E ++ EM+ L + + Sbjct: 243 LDPAKIEEFYQAILANEKDKVFEFLKEFED--YEASNVIDEMIFFLKEAFFAKNN----- 295 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + +++ L + L + D + + + Sbjct: 296 ---------------LFSMLIYERFFRILSRAKTMLNSSDDDSFVLCVMAFMLIEATYLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVP 390 + E + + +P P+ Sbjct: 341 SIDEAIKGSKQDSTPSPKQQEIPSIQQ 367 >UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 Tax=Alphaproteobacteria RepID=B1M6N3_METRJ Length = 637 Score = 298 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 148/404 (36%), Positives = 221/404 (54%), Gaps = 8/404 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP F D++GQ+ ++ LANG + RI A++ +G RGVGKT+ AR+LA+GL Sbjct: 27 YRVLARKYRPTNFGDLIGQDAMVRTLANGFAANRIPQAWMLTGVRGVGKTTTARILARGL 86 Query: 63 NC------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 N +TG T + + +C I + R +D++E+DAAS T ++D R ++D ++Y P Sbjct: 87 NYARAGQPDTGPTVSMPELGLHCAAIMESRHMDVLEMDAASHTGIDDVRAIIDGIRYGPV 146 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY++DEVHMLS +FNA LKTLEEPP H KF+ ATT+ +K+PVTILSRC +F L+ Sbjct: 147 SARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSRCQRFDLR 206 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ + L + E + E AL + RAAEGS+RDALSL DQAIA G G ++ Q+ Sbjct: 207 RVEAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGSVRDALSLLDQAIAHGAGTITAQS 266 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L L EA++ + A + G + +L ++ H + ++ Sbjct: 267 VRDMLGLADRARILDLFEAVMRGSVPAAFAELRAQYDSGADPSVVLSDLAAFTHLVTRLK 326 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + P A + + R+R A + + +Q LL E+ AP EM ++ Sbjct: 327 VVPEAAADPTLSETERVRGAAFADKLSIRALSRAWQILLKAIPEVQAAPRPLAAAEMAIV 386 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 R E ++ A AP P P Sbjct: 387 RLAYAADLPTPDEALRQLRAEAAAAPADEAPAVSARPPLPPIPD 430 >UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=B7KLR0_CYAP7 Length = 462 Score = 298 bits (761), Expect = 6e-79, Method: Composition-based stats. Identities = 117/392 (29%), Positives = 195/392 (49%), Gaps = 4/392 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L K+RPQ F D++GQE + AL N ++ +I ++YLF+G RG GKTS AR+LAK Sbjct: 6 NYQPLHLKYRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTARILAKA 65 Query: 62 LNCETGITAT--PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC++ +T PCG C +C+ IE+G +++ EIDAAS V+D R L++ +AP GR Sbjct: 66 LNCKSTPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQSHFAPIDGR 125 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++V+++DE HML+ S NALLKT+EE P F+L TT+P KL TI SRC F+ K Sbjct: 126 YRVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFNFKNTS 185 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + L I +E+I P ++ +A A G LRD ++ ++++ V Sbjct: 186 LKTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLRD-GLQLLSGLSLLSCEITSDLVIK 244 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-LS 298 L LV+ ++ ++ E G +++L + + +++ Sbjct: 245 ATNGLSPQTISQLVQKILTGQTLDLLIAGRELIEEGKTPQSILKSLTETYRDLLLLKSDF 304 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ +++LA + + Q L+ +L + + +E+ LL+ + Sbjct: 305 KCHTLISNSSNLTHLKQLADSTELEILDQGLQQLIQSEAQLKTNLNATVWLEICLLKLIP 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 P P Q + V Sbjct: 365 ATPIFLPPISNHNGQRKREQQQSEVSPSRIWA 396 >UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax=Mycoplasma pulmonis RepID=Q98RG0_MYCPU Length = 836 Score = 297 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 125/482 (25%), Positives = 221/482 (45%), Gaps = 17/482 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RP TF +V GQ+H++ L N + +I H YLF+G RG GKTS+A++ A Sbjct: 22 MNYKALYRVYRPTTFDEVNGQDHIVATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFAT 81 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC PC +C + +D+IE+DAAS V+D R L + ++ P +G Sbjct: 82 ALNCIHKNDDFNPCQICIE----NSNKNIDIIEMDAASNNSVDDVRRLNEELKSLPLKGE 137 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++Y+IDEVHM ++ +FNALLK+LEEPP+HV F+ ATT+ K+P TILSR +F+ + + Sbjct: 138 YRIYIIDEVHMFTKSAFNALLKSLEEPPKHVIFIFATTESHKIPNTILSRVQRFNFRRIS 197 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I +EP++L +A A GS RDALS+ DQA G G+++ + + Sbjct: 198 NDVIIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSIADQASIYGQGKITLKNLIT 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 G ++ ++L+ N + ++E G + E LL+ ++ ++ + + + Sbjct: 258 SFGISSNESVINLINN-TVFNLYEAINNLDEFKKNGADPEYLLISLINIIKDFIVFKKTN 316 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + I + + + L + +E+ +++ Sbjct: 317 NLSFLALLSFDEIDLI-----KIDLQKSYFIIEEAMKTLEFLRISEMPFDAIEILIIKVH 371 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ----VPPQPQSAPQQAPTVPLPETTSQVL 413 + E E + + + S + ET+ Sbjct: 372 KKIGQEEEKENENEKLKIIQNSIDNEKIKDELLNYASASKGSIGTNTIETSILETSEDEE 431 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A G K E + + N+ ++ + + E + ++ Sbjct: 432 AQSLTQILNSGEMDLKLKEKTNNSWDKTQNHKQQSNTDLISKTNEIITNLNENEASISEL 491 Query: 474 EA 475 + Sbjct: 492 DQ 493 >UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7E4_GEMAT Length = 598 Score = 297 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 165/652 (25%), Positives = 260/652 (39%), Gaps = 69/652 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP+ FA V Q HV L ++ GR+ H YL G RG GKT++AR+LA Sbjct: 1 MS-LALARKYRPRNFATVAVQNHVANTLKGAIARGRVAHGYLLCGPRGTGKTTLARVLAM 59 Query: 61 GLNCETGIT----ATPCGVCDNCREIEQGR-FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNCE PCG C +C+ I G +D++EIDAAS V+D R+L + YAP Sbjct: 60 ALNCERRGEPELQGEPCGHCGSCQRIWSGSASLDVVEIDAASNRGVDDARELRERAMYAP 119 Query: 116 AR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV---TILSRCL 171 + R+KVY++DE HML+R ++NALLK LEEPP V F+ ATT+PQK+ ILSR Sbjct: 120 SGDDRYKVYIVDEAHMLTREAWNALLKILEEPPPRVVFVFATTEPQKIAQQAAPILSRLQ 179 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-G 230 +F LK + +IR +L +L EE +A E AL ++ARAA+G LRDALSLTDQ ++ G+ Sbjct: 180 RFDLKRIGPAEIRERLAAVLTEEQVAFEADALGMIARAADGGLRDALSLTDQVLSLGESA 239 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 V+ V LG + DD+ L+L++ + E V A + A G+++ +L + LL Sbjct: 240 AVTADRVQTALGLIPDDEYLALLDMVAERRAVDVFATVQRLADAGVDFVLVLSGLGDLLR 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + + + E + + D+ LL + ++ +E Sbjct: 300 -AQLAIALGGVPPELPERMRAALDERKQRLAANDLLRMLHALLELEPMYRRSGQPQLLLE 358 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 L+R + L E S P + A Sbjct: 359 TLLVRFALLDRTIELQEVLQGFGSGGREDPPLRRAAHESRVASAHA-----------LPP 407 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 A V A + A RP + A+ + Sbjct: 408 APPAVMAPAPAVSSTQAAAQVLAQAVPTPRPATQQVADAAAAAQRADRQAAPRVPTTPPT 467 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 ++ +W+A ++ K +A+++ + TP Sbjct: 468 VEQVLNQWRAVADAIRAKGRGMLAQAVERLVPITITP----------------------- 504 Query: 531 SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNN--RGAQQKLAEALSMLKGSTVELTI 588 + + L ++ + A+ + G + Sbjct: 505 ------------------NGGLTLGYDPLDDTFAQAAENSRADVLAAVQGILGGVSAVAF 546 Query: 589 VEDDNPAVRTPLE---WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P R ++ + + + + + D EL + Sbjct: 547 KPYTPTISDKPARDTTVRMTAHDVQRQRTEQIASRSPLLDAAVKALDLELLD 598 >UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=Anaplasma RepID=B9KH82_ANAMF Length = 514 Score = 297 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 135/463 (29%), Positives = 222/463 (47%), Gaps = 11/463 (2%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA K+RP++F D+VGQ+ ++ L N ++G + L G GVGKT+ AR+++ LNC Sbjct: 43 LALKYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCV 102 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 G T PCG C C I+ D+IE+DAAS T V+D R LL+N Y P R+KVY+I Sbjct: 103 NGPTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLENSSYLPTSSRYKVYII 162 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS +FNALLKTLE+P EHV+F++ATT+ +K+PVT+ SRC + L L +Q+ Sbjct: 163 DEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFA 222 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I +E I H+ L+L+A A GS+R+AL L +Q+ ++ V A+LG +D Sbjct: 223 HLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIYTKNKIHVSEVRALLGCVD 282 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 +LV+ ++ A+ + + E ++ + +L + +++ + + +S Sbjct: 283 KHLTENLVKCILLADASSALEVFRELCSQSL-PVPILEGVQLIVYELCVTSVSKG----H 337 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + + R+ + +QTL G +E+ A D + EM ++R Sbjct: 338 KFDLGRELLSTVRSGSTPFLSRVWQTLTHGLQEVKNADDVQRAGEMMVIRLCYL------ 391 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 + P++ + + + + + PE S+ + Sbjct: 392 SDLPSPQKIAGLLLSKSREGAPMHTVKKKVEGATTYSYGTPELESRTMGGTSGESAGPSQ 451 Query: 426 TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 A +S P +++ T P Sbjct: 452 VAASESAPTQRVYDNEQRTEPMKKNGVNTHDKVYNPEEDEAVM 494 >UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 Tax=Alphaproteobacteria RepID=B0T1T4_CAUSK Length = 632 Score = 297 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 150/374 (40%), Positives = 212/374 (56%), Gaps = 6/374 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLARK+RP+TF D++GQE ++ LAN S GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 82 AYTVLARKYRPRTFEDLIGQEAMVRTLANAFSSGRIAHAFMLTGVRGVGKTTTARLLARA 141 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN ET P +C+ I +GR +D++E+DAASRTKV++ R+LLD V+YAP Sbjct: 142 LNYETDTVHQPSVDLTIDGRHCKAIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVE 201 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP H KF+ ATT+ +K+PVTILSR +F L+ Sbjct: 202 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQRFDLRR 261 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 ++ + + I +E E L L+ARAAEGS+RD LSL DQAI G+ V+ Sbjct: 262 VEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLLDQAIVQGERGSTVTAA 321 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG D Q ++L E ++ +A G + +++++L H ++ Sbjct: 322 VVRDMLGLADRGQTIALFENVMSGKPGDSLAGFRALWGFGADPAVVMLDLLDHCHGASVA 381 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R+ + + +Q LL +E+ APD EM L+R Sbjct: 382 KALGPDALTLPKEQAARLTAIGAQTSAGTLSRLWQMLLKAHEEVRRAPDAMAAAEMALIR 441 Query: 356 ALAFHPRMPLPEPE 369 E Sbjct: 442 LCYAADLPGPEEAL 455 >UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9W0_THEAS Length = 580 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 156/533 (29%), Positives = 228/533 (42%), Gaps = 9/533 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP F+++ GQ V+ AL L GRI HA+LFSG RG GKTS ARLLAK L Sbjct: 2 YLSLYRKYRPSRFSEISGQRGVVEALVGSLRSGRIPHAFLFSGPRGCGKTSAARLLAKRL 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC + CG C NC I++G +D++EID AS +E+ R L D V AP + K Sbjct: 62 NCASPAEDGESCGTCVNCEAIQRGGHLDVVEIDGASNRGIEEIRSLKDQVALAPFQAPNK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML+ +FNALLKTLEEPP V F+LATT+PQK+PVTI SRC+ F + + E Sbjct: 122 VYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRSRCVHFPFQRISTE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ H++ E I E +AL LAR+A+G+LRDALSL +QAI+ G G V+T A+ +L Sbjct: 182 DIKDRISHVVQMEGIEAEDQALWELARSADGALRDALSLLEQAISVGGGMVTTAAMEGIL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + V + E + + + G E + + L + V Sbjct: 242 GGFSRESLQRWVRQLRE-DPPGAFQGLAQIVRGGSNLERISEGLFLLFRDLLFVGRWGEG 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + A +++ TL + V + Sbjct: 301 VLSALGISSSEGAFLLSEAPNWDLGVLEVLCATLSELMPRTRQGMRSDVFVGLLQCGIDG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV---PPQPQSAPQQAPTVPLPETTSQVLAA 415 R P A + MT Q Q P++ + + Sbjct: 361 ALGRAGSSPPASRAPKAGHEAHRSAMTAPQTVVVAQTEGKPGQIDPSIAVEDKPDTPSEP 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 E + + NAA+ +A+ + + Sbjct: 421 SLAGSETPKGRPLDGGERFSVFQHLADVNAAVACVAAHCRILVGEEGVHVSVPEDPLISS 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS 528 + + M V +T L E K + + W Sbjct: 481 ILSQWRSMDMILDAVRSTLGLPPGELPPGVCEEDPPKE-DKDLPSGRWCRMAE 532 >UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYP8_9ACTO Length = 768 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 239/575 (41%), Gaps = 24/575 (4%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L R+ HAYLFSG RG GKT+ AR+LA+ LNC G T TPCG C +C E+ G Sbjct: 3 EPLKAALKANRVTHAYLFSGPRGCGKTTSARILARCLNCVEGPTDTPCGKCASCIELATG 62 Query: 86 R--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 +D++EIDAAS V+D R+L + +APAR R+KV+++DE HM++ FNALLK + Sbjct: 63 GPGSLDVVEIDAASHNGVDDARELRERAAFAPARDRYKVFILDEAHMVTPQGFNALLKLV 122 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPPEHVKF+ ATT+P+++ TI SR + + + + + L + E I+ L Sbjct: 123 EEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPGDVLMPYLSSLCAAERISVAEGVL 182 Query: 204 QLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ RA GS+RD+LS+ DQ +A + +G +S + A+LG D +V + +G Sbjct: 183 PLVVRAGGGSVRDSLSVLDQLMAGAENGVISYERAIALLGYTDGTLLDGIVTNLHAGDGS 242 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA----LGNDMAAIELRMRELAR 318 V + G + + + L L + ++ L+P L RM + A+ Sbjct: 243 AVFDALERMVDSGHDPRRFIEDFLQRLRDLLVISLAPEGARTLLQGIPVEQSERMYQQAQ 302 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPV 378 T + + + A ++ VE+ + R L + Sbjct: 303 QWGATKLSKAADLTDEALRSMVGATSPKLQVELLIGRIL---------VEIQGAAKASVE 353 Query: 379 APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 AP P+ ++ A ++L+ +Q A + + Sbjct: 354 RAITDQGGDSAGNASSDAPVVYPSGLSGAALAREEA--RRLREMQEAKAREAQSVPVSPV 411 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALK 498 L+ +A P+ E+A +A PV VV+T + + Sbjct: 412 HSAPAAQPLQPIAPTVSAPPVSVEPTPTEEATVPITPTAEQA--PVTTAIPVVSTVEPVY 469 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLR- 557 + +A AE + W + + A K +N V + + Sbjct: 470 EVPPITPLATVAEPAVAEVKLIEKWDVFTQIFLSEHAGWKNVVAALKVHQENEVEVIFQL 529 Query: 558 ---SSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 L+ +A + G + V Sbjct: 530 PTVEQAEKLSGEKGTTIVAGVVEKTLGVVKRVKFV 564 >UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X phytoplasma RepID=Q83VB4_9MOLU Length = 579 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 203/365 (55%), Gaps = 10/365 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK RP+ F +VGQE V+ L N + L +IHH YL SG +GVGKT++A++LAK Sbjct: 1 MSYLVLYRKHRPKNFDGMVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C+ C + Q +D+IEID AS V++ R+L D VQY P ++ Sbjct: 61 AINCQNPQGQDCCNECEFCLVVHQKANLDVIEIDGASYNGVDEIRELKDTVQYKPHLLKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+LS ++FNALLK LEEPP +V F+L T++ K+P TILSR FHL L Sbjct: 121 KVYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I+ +L I+ EE I AL +A ++GS+RDAL+L D+ + + + + M Sbjct: 181 EEIKTKLNPIVEEEKILITDEALTTIAAYSDGSMRDALNLLDKISSYKINLIEKKDIEKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E +V+ + +++A + ++ L +++ ++ + ++ Sbjct: 241 LGVISESKINQLAEYLVQPDINQMIAFLELILKPNVQISPFLDDLIDFFQKLLLEHVT-- 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R + + +++ LLI ++ + + P ++ + + ++ Sbjct: 299 --------NPQENTNLFRLLTNSKRNEFFEILLILKQNIIHFPTKKNSLILNFIKIHNLF 350 Query: 361 PRMPL 365 + Sbjct: 351 FDKNI 355 >UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Tax=Nostocaceae RepID=Q8ZSE1_ANASP Length = 429 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 130/429 (30%), Positives = 218/429 (50%), Gaps = 6/429 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQ ++V+GQEH++ L N ++ +I AYLFSG +G GKTS AR++AK L Sbjct: 2 YRPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSL 61 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC+ T PCG C++C+ I VD+ E+DAAS + VE R+L+ Q+AP RF Sbjct: 62 NCQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRF 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDE H LS S+ ALLKT+E PP HV F+ TT+ K+P TI+SRC +F K + V Sbjct: 122 KIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPV 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I ++E I P A+ +A+A +G LRD+L L DQ G+ +++ V + Sbjct: 182 SLVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWEL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ + L++ E +++ + ++ + G + A+ ++ L + + + +P Sbjct: 242 SGTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTNPN 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + +++ I+ L + R+ L D + +E TL+ + Sbjct: 302 GRHLTQLEQDTWEELVSISQLWNIDQIRNAIAIL-MARQSLMRDEDAHLWLEATLIEIVP 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAP-TAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + +P ++ P Q Q Q+ + + + V A ++ Sbjct: 361 TNKGSHQSQPWKDWKTAQDAINWGKEQLPHLTQAQLQEHWQKLTPINGKKAPAWVEAVQK 420 Query: 418 QLQRVQGAT 426 Q+ Sbjct: 421 LQQKQLQQA 429 >UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX3_9PROT Length = 561 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 171/554 (30%), Positives = 267/554 (48%), Gaps = 4/554 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR+WRPQ F+D+VGQ+ V+ L N L+ G + HAYL G RGVGKT+IARL+A Sbjct: 1 MSYLVLARRWRPQQFSDLVGQDVVVRTLKNALASGNLAHAYLLCGIRGVGKTTIARLMAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NCE PCG C CR I G +D+ E+DAAS T V+D R++LD V+Y P+ + Sbjct: 61 AANCEQPEDGEPCGRCKACRGIADGSNLDVQEMDAASHTGVDDVREILDGVRYPPSSLKT 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDE HMLS+ +FNALLKTLEEPP HV F+LATT+ +KLPVT+ SRC +F L+ L + Sbjct: 121 RVYIIDEAHMLSKSAFNALLKTLEEPPAHVLFILATTESEKLPVTVRSRCQRFDLRRLGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I L H+ +E I+ + A +ARAA+GS+RDALSL+++ +A +++ V A Sbjct: 181 SEIAAYLTHVFEQESISADSDAAAAIARAADGSVRDALSLSERVLAYSGKKLALADVDAA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + SL A+ + V+ + AA G LL E+ L H+++ + + + Sbjct: 241 LGQIGVARIRSLSHAIFAGDALAVVEQMRAAAGTGHGARTLLQELARLWHQLSCLLVDES 300 Query: 301 ALGNDMAAIELRMRELAR-TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 LG ++ + + E R + + L YQ L+ G ++L D RMG EM L+R Sbjct: 301 LLGEEVDLEQRQWLEQYRDKLSGPALDLRYQVLISGMRDLSL-VDERMGAEMILMRLCGL 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + A + Q + P P + + Sbjct: 360 NAISAVGALPAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKDAAG 419 Query: 420 QRVQGATKAKKSEPAAATRARPVN--NAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + V + LA++ + VQ + + A K + Sbjct: 420 ANSAAEMSNQPAGQRCKDWPQVVAVLHEFKPGLAAMLEHVQCLEFSAKVRLALDKHQQAM 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A+ + + + ++ + A A + + L L++ Sbjct: 480 INASDRRAFAEWLGREVFWESRQAGEGESISQERERLARAEKARMRQHAEADPHLQALMQ 539 Query: 538 QVALNAWKEESDNA 551 ++ Sbjct: 540 EMDAQLVNVLPAGV 553 Score = 63.9 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 9/185 (4%) Query: 456 RVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 P+P+A + A + + + A L+ AA+++ Sbjct: 369 PAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKDAAGANSAAEMSN 428 Query: 516 EAIERD--PWAAQVSQL-SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 + + W V+ L + + + E V L L Q+ + N ++ Sbjct: 429 QPAGQRCKDWPQVVAVLHEFKPGLAAMLEHVQCLEFSAKVRLALDKHQQAMINASDRR-- 486 Query: 573 AEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 A + G V + + + R+ + + A+ R+ AD ++Q L + D Sbjct: 487 --AFAEWLGREVFWESRQ--AGEGESISQERERLARAEKARMRQHAEADPHLQALMQEMD 542 Query: 633 AELDE 637 A+L Sbjct: 543 AQLVN 547 >UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5VA21_9CORY Length = 977 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 216/480 (45%), Gaps = 15/480 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +F ++VGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPGSFNELVGQEQVTVPLSAALDNGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+ PCG C++C + +D+ E+DAAS V+D R+L D +APA R+++ Sbjct: 62 VNGPTSKPCGKCNSCVSLAANGPGNLDVTELDAASHNGVDDMRELRDRAMFAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + E E L+ RA GS RD LS+ DQ +A +G ++ Q +L Sbjct: 182 MRGLLERTVAAEGAIIEESVYPLVIRAGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + + A+ + + +++ G+ ++L L + ++Q P A Sbjct: 242 GVTDDTLIDATIAALATNDRASLFTTVDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDA 301 Query: 302 LGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + A+ I L G L A R+ +E+ + L Sbjct: 302 VNLGLVDAPTDRGEILLQQAQEFDSQRIPRIAGILNDGLSSLKGATSPRLLLEILCAKML 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 EP ++ + P S+ + P+ + + Sbjct: 362 I--------EPGGQAAPAPALSAPSARPTPAAPASTPSSKYERPSQRRAREAQEARNVAE 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + V+ +AK E + R + + +K A Sbjct: 414 KPEVVEAPVEAKPRESEESPETRSTPPQPASTSVHAQPIDAIKNAWDKIRSTVSKTNAVA 473 >UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Tax=Bulleidia extructa W1219 RepID=D2MMY2_9FIRM Length = 547 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 202/378 (53%), Gaps = 2/378 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q L +K+R + F +V+GQ++++ A+ N ++ ++ HAYLF G RG GKT++ARLLAK Sbjct: 1 MEKQALYQKYRSKKFTEVIGQDYIVQAIQNTVNQNKVGHAYLFCGPRGTGKTTMARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C +G D+IEI+AA+ T V+ RDL+D AP +G + Sbjct: 61 AINCEDSKE-KPCNHCVSCELANKGIHPDIIEINAANETSVDHIRDLIDKAYLAPMQGIY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVH LS + +ALLK LEEPPE+V F+LATTDPQK+ TI+SRC +F + Sbjct: 120 KVYIMDEVHQLSSAASSALLKILEEPPENVIFILATTDPQKMLPTIISRCQRFDFHRVPS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ L H+ N E I E A + LAR A+G +RDALSL DQ A G + + + Sbjct: 180 KQIQDHLLHVSNLEGIQLEEEAAKNLARLADGGMRDALSLLDQCSAYTSGDIKESDIRRI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ ++L+ + N ++ + +GI E L E + ++ I + + + Sbjct: 240 YGLTSVEEKMTLLNLIQTKNYFSIINHSKQYQEQGINLEKFLEEWIEVVKEIVLYVNTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ + L+ R++ ++ E+ ++ Sbjct: 300 REILEIL-TDEEASQISLLFSKQNWMKILDLLIEFREKFKQNKNQTAYFEVLCIQLSQIS 358 Query: 361 PRMPLPEPEVPRQSFAPV 378 P + E+ Sbjct: 359 PAKEEEKTELVESQEPDP 376 >UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter showae RM3277 RepID=C6RIQ9_9PROT Length = 831 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 144/443 (32%), Positives = 220/443 (49%), Gaps = 22/443 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDENRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSQPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ AV+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSAVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A I + + E ++ E+ Sbjct: 243 LDPQRIEEILALVMSGDKPAVSAAIAQL--ESYDAEMVIDEI------------------ 282 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 283 --TANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E A +A + A + + + Sbjct: 341 SIDEMIAVDAREKFTDSQARTADFGGSRAASNAVKSAVQNGAAQGRNLSAQTLAGSANLN 400 Query: 424 GATKAKKSEPAAATRARPVNNAA 446 T + + +A + A Sbjct: 401 AKTPQEPGDQTSAAKTPNPAYEA 423 >UniRef50_B3TCV4 Putative ATPase family associated with various cellular activities (AAA) n=2 Tax=root RepID=B3TCV4_9BACT Length = 555 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 209/392 (53%), Gaps = 8/392 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y++LA K+RP+ F +++GQ+ ++ L N + RI A++ +G RG GKTS AR+++K Sbjct: 5 TYKILALKYRPKNFKELIGQDIMVETLVNSIKSNRIAQAFMLTGERGTGKTSTARIISKS 64 Query: 62 LNCETGI-TATPCGVCDNCR--EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 L C C + C EI + +D+ E DAASRT V+D R ++D +Y P Sbjct: 65 LTCTGNFLEGVKCKTGEICHCEEITNDKHLDVTECDAASRTGVDDVRQIIDAARYKPTTA 124 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++K+Y+IDE HMLSR ++NALLKTLEEPP +KF+ TT+P+K+P+TI SRC FHL Sbjct: 125 KYKIYIIDECHMLSRSAWNALLKTLEEPPNQLKFIFCTTEPKKIPLTIASRCQTFHLHRA 184 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQ 235 ++ + L+ I E A++L+A+A+ GS+RDA+SL D+A+ + + +V Sbjct: 185 SIKVLFDHLKKISKIEEGKISDSAIKLIAKASTGSVRDAISLLDRALINQHVSEKEVDEA 244 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + MLG D + L L++ + + + ++ + + + G++ +L ++L LL+ I Sbjct: 245 TMRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMIDEGLDAASLKNDILELLYFILQK 304 Query: 296 QLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + +++ + + L++Q L E + +G+EM + Sbjct: 305 KNLGDFESDLTISESELEMIDVISKDVRTETLILFWQFTLKALDEDKILTNPLLGLEMLV 364 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 +R L + S + Sbjct: 365 IRLLHLKGMPTYEDLINKSISSQTDEISTQEQ 396 >UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRC3_CLOPE Length = 531 Score = 294 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 129/480 (26%), Positives = 241/480 (50%), Gaps = 9/480 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP TF V+GQ L ++ +I H+YL G RG GKT+ AR+LAK +NC Sbjct: 2 LYEKYRPNTFESVIGQGENAEILKKQVASKKIAHSYLLYGERGSGKTTTARILAKAINCL 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + I PCG C NC IE+ + +D++EIDAAS V++ R+++D+++YAP ++KVY+I Sbjct: 62 SPINGEPCGKCANCIAIEEKKAIDVVEIDAASNNGVDNIRNIIDDMKYAPTSMKYKVYII 121 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HMLS+ + NA LKTLEEPPE+ F+L TT+ LP+TILSRC ++ K +DV+ I + Sbjct: 122 DEAHMLSKAASNAFLKTLEEPPEYGVFILCTTEQTALPITILSRCQRYTFKHIDVKDIFN 181 Query: 186 QLEHILNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAMLG 242 ++ I +E + L L+++ A+G++RDA+ + +Q I +G ++ V +LG Sbjct: 182 RINFIATQEGYNPSDKEKILYLISKMADGAVRDAICILEQVI---NGNITDYNEVVKLLG 238 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + ++N +R + LI +A + + E L+ ++ L+ I +++ + + Sbjct: 239 VVSNRTLFELLATLKKSNSKRAIDLIYKALEQ-TDAEKLITNIIALVRAILLIKSNASID 297 Query: 303 GNDMAAIELRMRE-LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 M+ ++ + + A+ +++ + ++ + + + +EMT+L+ + Sbjct: 298 LIKMSDEDINIAKSAAQCFETSELFNIIEAFNKVYFDVKNSNFKGVLIEMTVLKLIEDLS 357 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAARQQLQ 420 P + + + Q + + E Q AA Q++ Sbjct: 358 ISVKPINNIDINGLRAEIESELKAKYSNQAQNTDKLKATLEKEIEEKYKRQFQAAIPQIE 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K+ E + L++ ++ + + + P+ + A Sbjct: 418 KNIREKIQKEVEETQNSNFERAEKVKLQKAIDLSKQKLIEECNNLAKNNPSFSSLAQAFA 477 >UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter rectus RM3267 RepID=B9D4Q0_WOLRE Length = 906 Score = 294 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 148/476 (31%), Positives = 226/476 (47%), Gaps = 25/476 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDESRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSRPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ V+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSVVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A + + + E ++ E+ Sbjct: 243 LDPQRIEEILALVMSGDKSAVSAAVAQL--ESYDAEMVIDEI------------------ 282 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 283 --TANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPEPE---VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + E + A A + ++ +A P T Q+ A+ Sbjct: 341 SIDEMIAVDAREKFADSQARAADFSASRAASNFTGGRSEAARFRAPAQTGQISASADGSN 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 S+ AA Q ++ K Sbjct: 401 LTGVNAAKLASQNGAALEQNLSAQTLTGSANLSAQTPQEPGGQTSAAKTQNPAYEA 456 >UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa Japonica Group RepID=Q53M12_ORYSJ Length = 1121 Score = 294 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 113/462 (24%), Positives = 209/462 (45%), Gaps = 4/462 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L++K+RP++F ++VGQ V+ +L N + RI AYLF G RG GKTS AR+ + L Sbjct: 334 QRSLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAAL 393 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 +C PCG C C + G ++LIE+DA++R + R L++N+ + R+KV Sbjct: 394 SCVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKV 453 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM+S ++A +K L+EP V F+ T DP+ LP ++SRC ++ + Sbjct: 454 FVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDID 513 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ ++G Sbjct: 514 IVCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLVG 572 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +++ L L+E + A+ + E G++ AL+ ++ GL+ I A Sbjct: 573 VVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADP 632 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I R A +Q + L K++ + +R LL+ + H Sbjct: 633 TCGGEGIGGRNITDAE---LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNS 689 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + +QS + + + +A +T A+ + Sbjct: 690 EMIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTASGHSSPQG 749 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + ++ + + + ++ + Sbjct: 750 VVSVSSRMRANDNLKHGECRSVDRVLQDSAQRSNSSELRPMT 791 >UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanothece RepID=B1X2D0_CYAA5 Length = 381 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 110/358 (30%), Positives = 186/358 (51%), Gaps = 4/358 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++Q K+RPQ+ D+ GQ+ V L ++ + A L SG +G GKTS AR++A Sbjct: 18 AFQPWHLKYRPQSINDLTGQDSVQKVLTRLITEDSVPQALLLSGPKGTGKTSTARIIAMS 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G+T TPCG C NC+ I+ G +D++E+DAAS V+D R L+ + YAP R + Sbjct: 78 LNCEKGVTTTPCGECKNCKAIQNGNSLDVVELDAASHNGVDDIRKLVADAGYAPFSARTR 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H LS + NA LKTLEEP H KFLLATT+P K+ T+ SRCL + + Sbjct: 138 VFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQS 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSA 239 ++ +LE I +E ++ + L+ +AR+++G +RD++ L + GD V V Sbjct: 198 EVAQRLEDIAKKEGVSIDDSCLEAIARSSKGGMRDSIQLLFEVFCHKEGDEPVKVDKVYE 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQL 297 + L+ Q L+ A+ + + ++ N ++ + +L + ++ Sbjct: 258 VTKELNPTQVEFLLSAVAQGDSYNLVRCCNAIEESALDINKVFDALLTAWTDVMAVVLGA 317 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + L++ + T + + + L + + + + + TLL Sbjct: 318 NPKQIAKTSILGTENLETLSQKLDLTMLTVGLEKLDQAERRIATSSNSSRWLLATLLS 375 >UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 Tax=Leptotrichia RepID=C7ND36_LEPBD Length = 524 Score = 293 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 215/414 (51%), Gaps = 11/414 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQE VL A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFDEIAGQEFVLRAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAK 59 Query: 61 GLNCETGI--TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 G+NC T PCG C+NCREI QG +D+IEIDAAS +++ R+L + + Y P +G Sbjct: 60 GVNCLNSENVTDNPCGECENCREISQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKG 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R K+Y+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ + Sbjct: 120 RKKIYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVISRCQRYDFLPI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 D + I+ L+++ +E I + +L L+ R +EGS RD+ S+ +Q ++ + ++ Sbjct: 180 DKKDIKKLLKNVAEKEKITIDEASLDLIYRKSEGSARDSFSIFEQVVSNFNNEEIDITKT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH------- 290 LG + D + + + N E+++ I++ G+ E L + L Sbjct: 240 QNALGVVPDVILEEFLNLIKDGNKEKLVDFIDKIWEEGLIIETFLKDFSYYLKEQFKKKT 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 +++ L E + E R + I Y+T ++ + + V Sbjct: 300 DLSVNFLLDTISAIFFTLNEFKYEEDKRLLGYVLIHELYKTQRKNLRQNNISEEPVSSVN 359 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 ++ + E + + S P A + + + Sbjct: 360 SAFSKSDMNEMSTMIYEKVMNQISINPKIEKAAFNSKENAEITEKTENEKIVKN 413 >UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4_PHYPA Length = 1473 Score = 293 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 133/621 (21%), Positives = 261/621 (42%), Gaps = 20/621 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +++ +++K+RP++F D+VGQ V+ +L ++ G++ YLF+G RG GKT+ AR+ A Sbjct: 687 THRSMSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAAA 746 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C PCG+C C + R D+ EID ++ ++ R L + + GR Sbjct: 747 LVCLNTEPHRRPCGLCRECATMTLNRSRDVKEIDVSTCPDLDHMRLL---LNLPSSNGRQ 803 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V++++ L+ + A LK L++PP +V F+L TT+ ++LP++ SRC ++H L Sbjct: 804 QVFILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLKE 863 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L+ + +EH+ + AL L+A AEGSLRDA + DQ + D ++ V + Sbjct: 864 SEIMTRLQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQL-SLLDQTITLAMVQEL 922 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + +++ ++L++ + A+ + + E G++ +L+ ++ L+ I Sbjct: 923 SGLIPEEKLINLLDMALAADTVNTVKGMRELLDAGVDALSLVAQLASLIANIL---AGAI 979 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + R + R ++ + L K+L + DR + LL+ Sbjct: 980 DLRRETRKKGFFYRNMPRREEQQRLRQALKVLAECEKQLRASNDRPTWLTAALLQFAPDR 1039 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P + + P +P P+ S+ ++R+ Q Sbjct: 1040 SYLPSSVD---------TSMAPSPIAFDTFERVPPGEPCTPRLPPPQPASESRSSRKHSQ 1090 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +V + S+P R + + + S + A + + Sbjct: 1091 QVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQADD 1150 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T+ V+ P + + + + + + QL L +A Sbjct: 1151 TSLRSASSLVLFDPSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQL-LSSQGTLMA 1209 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 L+ ++E+ + RS + A M G VEL + + P+V L Sbjct: 1210 LSVARDETFAVAHVEFRSPGHKARAERLRSSTCHAFQMALGCPVELKLSLECPPSVV--L 1267 Query: 601 EWRQAIYEEKLAQARESIIAD 621 E +A + ++ S + Sbjct: 1268 EEIKASHIAAQSEPSTSEVKH 1288 >UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XKJ2_9HELI Length = 587 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 133/322 (41%), Positives = 187/322 (58%), Gaps = 5/322 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MEQQALALKYRPMDFDELVGQEAVSRTLSLALDSKRLSHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 L CE+G + PCG C NC +D++E+D AS K++D RDL++ +Y P G Sbjct: 61 ALQCESGPRSKPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIRDLIEQTKYHPNIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+++IDEVHML+R +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K + Sbjct: 121 RFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I L+ IL E I ++ AL +L R+ GSLRD L+L DQAI V+++ + Sbjct: 181 SDRSIFEHLKKILQNEQIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYSSYNVTSEVCA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG ++ + +L E + + + ++ ++ E LL EM L + + Sbjct: 241 NMLGLINAESLNALFECIFTQDRDSLLKMLEGFFE--YECGMLLDEMSIFLKEKLLKG-N 297 Query: 299 PAALGNDMAAIELRMRELARTI 320 + + R+ A+ + Sbjct: 298 DTRYSSLLIDRFFRIITQAKEL 319 >UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Tax=Mesoplasma florum RepID=Q6F0D9_MESFL Length = 631 Score = 293 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 109/393 (27%), Positives = 198/393 (50%), Gaps = 3/393 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP F D+ G ++V+ L N L +I H++LF+G RG GKTSIAR+LAK +N Sbjct: 5 KALYRKYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C VC++C + R D+IE+DAAS V++ R++ +N+ P G++K+Y Sbjct: 65 CLNIKDGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNNINSLPFIGKYKIY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP H F+LATT+ K+P TILSRC F+ K +D + Sbjct: 125 IIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISL 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++L I E + L+ +A +EGSLRDA ++ +Q + ++ + + ++ Sbjct: 185 MNRLSFICENEGYKIDKAVLEEIAIISEGSLRDASNVIEQLMTVTSDHITVEDLKSVFYV 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + ++ ++ + ++ +A +G++++ + ++ ++ I + + Sbjct: 245 ATKNEKMKILTNILNNDPATIINYFEKANNQGMDFDVFTLSLIEIVKEIIEFKFTNDENV 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP-YAPDRRMGVEMTLLRALAFHPR 362 ++ + + E A+ + + L + + + L Sbjct: 305 LNILD-KSDLNEFAQ-VNVKSLFEVADNLSEAYAKTKGTNINFNYLLISLLKTLKEPTEH 362 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 E V + + P + + Sbjct: 363 KIKIEESVLTIQENIIVKEVIAEPVHIQEPEKQ 395 >UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicobacter pylori RepID=B9Y2E6_HELPY Length = 558 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 129/413 (31%), Positives = 205/413 (49%), Gaps = 23/413 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITEGKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ E E++L EM+ L + Sbjct: 242 IDRSVLEDFFQSLINQDEVRLKERYAIL--ENYETESVLEEMMLFLKAKLLSPD------ 293 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + + ++ Sbjct: 294 ---------------SYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLK 338 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + + + A + P Q + ++ + E+ Sbjct: 339 ALDDAILELEQSKENAFQPLNQNANAPKQEPKSAEKIEKLEKIESAETPQTPM 391 >UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGK3_9HELI Length = 939 Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 154/541 (28%), Positives = 247/541 (45%), Gaps = 24/541 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 LA K+RP+TFA++VGQE V L L +I +AYLFSG RG GKTS AR+LA+ L Sbjct: 43 IALALKYRPKTFAELVGQESVARTLCLALDSKKIANAYLFSGLRGSGKTSSARILARSLQ 102 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE GIT++PCG C NC +G +D+ E+D AS K++D RDL++ +Y P GRFK++ Sbjct: 103 CERGITSSPCGTCANCIAALKGAHLDITELDGASNRKIDDMRDLIEQTKYKPTMGRFKIF 162 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FN+LLKTLEEPP +VKF+LATTDP K+P TILSR F K + + Sbjct: 163 IIDEVHMLTKEAFNSLLKTLEEPPNYVKFILATTDPLKVPATILSRTQHFRFKKIPTTAL 222 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++ L HIL +E+++ + +L +L R GSLRD L+L DQAI ++TQ ++ MLG Sbjct: 223 KNHLAHILQKENVSSDEASLDMLIRNGHGSLRDTLTLLDQAIVFCQNSLNTQKLADMLGA 282 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD +L +A++ + + + G E E +L E+ + Sbjct: 283 LDPSAFDTLFQALLRKDMQECIKFAKSL--EGYEIEMILDELSLYIKN------------ 328 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +M E IPP Y + + L D + +T+L+ L Sbjct: 329 --------KMLEEIPQIPPVLGMRYANIINDSKAMLQLDCDSDFCLLLTILKMLEAQKIR 380 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + +S A A +T ++ ++ + + + Sbjct: 381 EIANALKQLESMQTPAQNAQITQLSNDYIATQNSMESKNAMQVDSINPMQSNTSVDSINP 440 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 + + + +++T + + + A ++ + Sbjct: 441 IKDSINPTNTKDSINKDSLPQTQTSVNSNLTIESSNKDSITHINTAQDSINPMQYNDSVK 500 Query: 484 VMQQKEVVATPKALKKALEH--EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 P K ++ H +P + + + IE ++ + Sbjct: 501 NSIDSINATIPTNSKDSISHVNSNSPNSTSLDSIQPIEARESKDSITYSITKNTTQTEIS 560 Query: 542 N 542 N Sbjct: 561 N 561 >UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 Tax=Rickettsia RepID=A8F087_RICCK Length = 544 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 128/428 (29%), Positives = 218/428 (50%), Gaps = 42/428 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y ARK+RP FA++ GQE ++ L+ + R+ YL +G RGVGKT+ AR++AK + Sbjct: 10 YIPFARKYRPGNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKTV 69 Query: 63 NCETGITATP---------------------------------------CGVCDNCREIE 83 NC IT C C NC Sbjct: 70 NCSALITEDTVGNSVKLKYNEQGAKPIGNRRVTSNNVGKFKSIDYTIRTCEECTNCISFN 129 Query: 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D+IEIDAAS+T V+D R ++++ +Y P +G+ K+++IDEVHMLS+ +FNALLKTL Sbjct: 130 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL 189 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP H+ F+ ATT+ QK+P TI+SRC ++ L+ L E+I LE+I +E++ + AL Sbjct: 190 EEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKADIEAL 249 Query: 204 QLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 ++++ +EGS RDA+S+ DQA + D +S+Q ++ MLG +D + E ++ Sbjct: 250 RIISFKSEGSARDAVSILDQAASMSAKSDNIISSQVINQMLGLVDTSVIIEFFEYIIRRE 309 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 E+ + LIN+ + + E + + + + V++ P + R++ + I Sbjct: 310 TEKAINLINKLYSFSVNLEIFIESVADFIAYLNKVKMLPNYRLPIYESFNDRIKNILSEI 369 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP 380 + + +Q G E+ + ++ EM +++++ L + +V Q+ Sbjct: 370 SLPYLSILWQIYNKGVVEIKISYNQLTETEMLVIKSIYSRSLPLLTDFDVNNQNLNQSIN 429 Query: 381 TAVMTPTQ 388 + + Sbjct: 430 PEIKKKFE 437 >UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 Tax=Neorickettsia RepID=C6V4Y0_NEORI Length = 403 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 178/328 (54%), Gaps = 8/328 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LA K+RP+ ++VGQ+ ++ L+ ++ + A L SG G GKT+ AR + Sbjct: 8 MGYIGLANKYRPRLLNEIVGQDFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTL 67 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C + PC CD+C + G D++EIDAAS T VED R L++ Y P ++ Sbjct: 68 SLLCSNRMDVLPCLKCDSCLSVLNGSHPDVLEIDAASNTGVEDVRMLIEGALYKPLLSKY 127 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDEVHMLS+ +FNALLK LEEPP+HVKF LATT+ QK+P TI+SRC + L L Sbjct: 128 KSYIIDEVHMLSQSAFNALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 187 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 I +L + E I A++ +A A+GSLRDALSL +Q +G+++ + Sbjct: 188 FVITERLTQVAEREQIEIAQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVDVLRN 247 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +G D + L+++++ + + + +N+ ++G E + +E++ + + Sbjct: 248 KMGLADLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGHEMLTIFMELV-----ALINEKIQ 302 Query: 300 AALGNDMAAIELRMRELARTI--PPTDI 325 L + LA+ + +I Sbjct: 303 DKLTARDDSKSGFFCRLAQCMLSSIEEI 330 >UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C591_HYPNA Length = 578 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 178/539 (33%), Positives = 251/539 (46%), Gaps = 24/539 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP+ F D++GQE ++ L+N GRI H ++ +G RGVGKT+ ARLLA+G Sbjct: 28 TYEVLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARG 87 Query: 62 LNCET--------------GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 107 LN E I P G +C I R D++E+DAASRT V D RDL Sbjct: 88 LNYEPKADAKGKKGKAAGPSIHLDPPGE--HCDAIMASRHPDVLELDAASRTGVADMRDL 145 Query: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 LD+ +Y P R+KVY+IDEVHMLS SFNALLKTLEEPP H+KF+ ATT+ +K+PVT+L Sbjct: 146 LDSARYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVL 205 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-- 225 SRC +F LK LD ++ L ++ E AL L+ARAAEGS+RD LSL DQ I Sbjct: 206 SRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQ 265 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + +VS AV AMLG D + L VE V + + +A + E A G + +L ++ Sbjct: 266 TTDGEEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDI 325 Query: 286 LGLLHRIAMVQLSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 L + I++ Q + R R LA+ + P +Q LL G +L APD Sbjct: 326 LDIAADISVAQATGDDWTQAGPADWANRTRALAQRLTPAQAARNWQLLLSGYGDLQVAPD 385 Query: 345 RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 + M +LR A E + P P A + Sbjct: 386 PATALNMVILRLAAASTLPSPEEAARMIAEGSRPPGKDNPPLKAPPQAPGGIESFADMIA 445 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN-----NAALERLASVTDRVQA 459 + +V + V+ + A P LE + + V+ Sbjct: 446 IMVAAREVGLQVDTERFVRPSHFEPGKLACALAPGAPQGLLGRLKIFLETYSDLDWSVEE 505 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI 518 + + ++E + + L+ E PEL E Sbjct: 506 ADTDTESVRERERREKAERIESAKQDPRVAAALALIPGAIILDVEDPPELLEMEGGEGD 564 >UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VVC8_9CYAN Length = 379 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 117/371 (31%), Positives = 194/371 (52%), Gaps = 13/371 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQ K+RPQ +++VGQ ++ L N L G + + +LF G RG GKTS AR+ AK Sbjct: 6 SYQPWHLKYRPQNLSELVGQPLIVRTLTNELKTGNLPNVFLFDGPRGTGKTSTARIFAKS 65 Query: 62 LNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + T TPCG C +CR I G +D+ E+DAAS V+D R+L++ + + R Sbjct: 66 LNCLSSSQPTLTPCGTCLSCRSICSGSNLDVRELDAASNNGVDDIRELINYSKLSTTN-R 124 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++ +DE MLSR + NA LK E+ + F+LATT+ +KL TI+SRC F + L Sbjct: 125 YRIIYLDECQMLSRSAQNAALKLFEDRLPNTIFILATTESEKLLDTIISRCQHFQFRRLS 184 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I +L I E I+ P AL+L+A+ ++G +RD++ L +Q S +G++ V Sbjct: 185 TQDITERLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMSTNGKIEPHHVRD 244 Query: 240 MLGTLDDDQALSLVEAMVE---ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++G++ D + L ++ + +MAL N+ G+E L+ E+L + + + Q Sbjct: 245 VIGSIPADSLVDLCVSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLVFQ 304 Query: 297 LSPAALGNDMAAIELR-------MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 LS + + L++ + +I TL + + + +G+ Sbjct: 305 LSQDTNSLKQGKVPFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQSSNPLIGL 364 Query: 350 EMTLLRALAFH 360 E+ LL+ Sbjct: 365 EICLLQLAYPC 375 >UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR32_9RICK Length = 553 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 232/419 (55%), Gaps = 15/419 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + LA ++RPQ F +++GQ+ ++ ++ N + L RI +AYL +G RG GKT+ AR++AK +N Sbjct: 6 KPLALRYRPQKFQELIGQDSMVISIQNAIKLKRIPNAYLLTGIRGTGKTTTARIIAKAIN 65 Query: 64 CETGITATPCGVCD-----NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 C+ + C +C I +D++E+DAAS+T ++D R++L+ +Y P+ Sbjct: 66 CKVDFASD--QKCSEGDFCHCESITNSNHIDILEMDAASKTGIDDIREILEASKYHPSTA 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KV++IDEVHMLS+ +FNALLKTLEEPP H+KF+LATT+ +K+PVTILSRC +F L+ + Sbjct: 124 EYKVFIIDEVHMLSKQAFNALLKTLEEPPPHLKFILATTEVKKIPVTILSRCQRFDLRRI 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASGDGQVSTQ 235 VE+++ L I ++E + +L L+++++EGS+RDALS+ DQAI +V+ Sbjct: 184 KVEEMKSFLRKICDKEEADVDENSLTLMSKSSEGSVRDALSILDQAIITYNLMGEKVTED 243 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG DD + + L+ +VE N E+ + + E G + + +L +L + + + Sbjct: 244 KVRTMLGLADDTKIVDLMSYIVEGNIEKSINAVEEIFDIGADPKLVLHSLLDVCYLMTRT 303 Query: 296 QLSP--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + R+ + + + T + + + L+ G ++L P+ + +M L Sbjct: 304 KTLGKISKDLSVSESDAERLNVMVKDLDMTYLTMLWHFLIKGLEDLNLYPNLSIAFQMLL 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 R +P+P+ +S T + Q V + + Sbjct: 364 TRLCHL---KNMPDPQSVYESKEESKINTEHNKTSNQKINLQSTTQIKNVSQEIESPKQ 419 >UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5C50 Length = 468 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 114/291 (39%), Positives = 188/291 (64%), Gaps = 2/291 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP +F +V G++ ++ AL N L ++ AYLF+G RGVGKT+IARL+AK + Sbjct: 2 YITLYRKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSV 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC CGVC+NC ++G F+DL+EIDAAS +++ R L + + Y P++G+ K Sbjct: 62 NCLEPKEDGEACGVCENCTSFQEGSFLDLVEIDAASNRGIDEIRLLKEKINYQPSQGKKK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC ++ K L ++ Sbjct: 122 VYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEPDKILPTIISRCQRYDFKTLSLQ 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + +QL++IL+ E++ E +L+ A+ GS+RDA+S+ ++ I +S + ++S + + Sbjct: 182 DMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLERLIVSSSERKISLEESEKI 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 LG + + +++ + ++ ++E + ++ EA L + + Sbjct: 242 LGMTPIQKMEQFLHCLLQEEKKTILRELDELWFQSVDMEAFLKDFAKFIKN 292 >UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057E1_BUCCC Length = 368 Score = 284 bits (727), Expect = 5e-75, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 229/367 (62%), Gaps = 4/367 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y++L+ KWRPQ F ++G ++ + + N L+ +IH ++L SG GVGKT+IAR+LAK Sbjct: 1 MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GIT+ PC C NC +E+G+F+D IE+DAAS+TKV+D + +LD +YAP GRF Sbjct: 61 CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLK LEEPP++++ +ATT+ K+P TI+SRCL L + + Sbjct: 121 KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQAVS 238 I + L+ I +E+I + AL++++ ++GS+R+AL+ + +S ++ + + Sbjct: 181 HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM--VQ 296 +LG LD L L ++ + ++ ++N A GI++ ++ ++ H+I++ + Sbjct: 241 KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN 300 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N ++ + ++ L++ I D+Q Y + LL G+ L +P ++G E+ L + Sbjct: 301 QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI 360 Query: 357 LAFHPRM 363 + Sbjct: 361 FQYIKEK 367 >UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 Tax=Helicobacter RepID=Q9ZLC5_HELPJ Length = 582 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 129/420 (30%), Positives = 205/420 (48%), Gaps = 25/420 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+TG A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CKTGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ E E +L EM+ L + Sbjct: 242 IDRSVLEDFFQSLINQDEARLQERYAIL--ENYETEGVLEEMMLFLKAKLLSPD------ 293 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + LL+ Sbjct: 294 ---------------SYSILLIERFFKIIMSSLSLLKEGANASFVL--LLLKMKFKEALK 336 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + P Q + ++ E ++ + + + Sbjct: 337 LKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGREKLEKRERIETPQTPMLSAK 396 >UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Y2_THELT Length = 465 Score = 284 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 119/348 (34%), Positives = 182/348 (52%), Gaps = 18/348 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F ++ Q L N L +I HAY+FSG RG GKTS+AR+LAK LN Sbjct: 2 EALYRKYRPKNFDQIIDQLQAKLVLQNALLKNKISHAYIFSGPRGTGKTSVARILAKALN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C++C I++G D+IE+DAAS +++ R + D V + P K+Y Sbjct: 62 CSNRKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+R +FNALLKTLEEPPE V F+LATT+ +++P TI+SRC + + I Sbjct: 122 IIDEFHMLTREAFNALLKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIEFRNFSEDAI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLG 242 + + + E I A +++AR A G +RDALS +Q DGQ ++ Q V LG Sbjct: 182 LENIRKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANYADGQVITPQVVEKALG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL----------------VEML 286 + D+ ++A+ + V L++E G++ + LL +++ Sbjct: 242 LVPDEIVQRYIKAIRNGLVKEVGELVDEVHRSGLDVDQLLQSSIEIIEEEISRNPSRDLI 301 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQTLL 333 + + ++ N A +L LA P I+ Y+ Sbjct: 302 SIGENLVLILRELKYSENRKAICKLLSMNLASKFESPEKIEHDYEIKN 349 >UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fusobacterium RepID=Q7P6U1_FUSNV Length = 490 Score = 284 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 110/294 (37%), Positives = 173/294 (58%), Gaps = 2/294 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP +F++V G+ ++ +L L + HAYLFSG RGVGKT+IARL+AKG+ Sbjct: 8 HITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV 67 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C NC+ I +GRF DLIEIDAAS +++ R L + + Y P G K Sbjct: 68 NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLKK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HML++ +FNALLKTLEEPP HV F+LATT+ +K+ TI+SRC ++ K LD++ Sbjct: 128 VYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDFKPLDLK 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 +++ LEHIL EE+++ ++ + GS+RD++S+ ++ I + ++ + Sbjct: 188 EMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAEDT 247 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 LG + + ++ N ++ + A + E ++ + Sbjct: 248 LGITPSSRIKIFLNKILNENEYDIINELENLANESFDIELFFKDLAKYCKNAIV 301 >UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=Q2QW40_ORYSJ Length = 1174 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 106/427 (24%), Positives = 200/427 (46%), Gaps = 4/427 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F+++VGQ V +L+N ++ +I AYLF G RG GKTS AR+ + GL+ Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PCG+C C + G +LIE+DA++R + ++LL+N+ + R+K++ Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM+S ++A +K L+EP V F+ T DP LP ++SRC ++ + I Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ ++G Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLVGV 638 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + +++ L L+E + ++ + E GI+ AL+ ++ GL+ I A Sbjct: 639 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADST 698 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + A+ R +Q + L K++ + +R LL+ H Sbjct: 699 ANDMAVGGRSLTDGE---LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSSE 755 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + ++ + + + + Sbjct: 756 MNQARSSTTECHKSMNDAVTEAGRESSSSRAASHSISAFGVSKKLLDPKATSLHSSPQAL 815 Query: 424 GATKAKK 430 + ++ Sbjct: 816 ASHSSRS 822 >UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, scaffold_35.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I8B7_VITVI Length = 1078 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 113/438 (25%), Positives = 198/438 (45%), Gaps = 12/438 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP F +++GQ V+ +L N +S GRI YLF G RG GKTS AR+ LN Sbjct: 319 RSLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALN 378 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--APARGRFK 121 C PCG+C C + G+ EID ++ ++ R LL + + +K Sbjct: 379 CLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYK 438 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ A LK LEEPP V F+ T D + +P T+LSRC ++ + Sbjct: 439 VFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEG 498 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I ++E++ E AL+L+A A+GSLRDA ++ DQ G +++T V+ ++ Sbjct: 499 DIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLG-KRITTSLVNDLV 557 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+E + ++ + E G++ L+ ++ L+ I Sbjct: 558 GVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVD 617 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + R A ++ + L K+L + +R TLL+ + P Sbjct: 618 AQQSDSFFGGRSLTEAE---MDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSPSP 674 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA------PTVPLPETTSQVLAA 415 L + S + + Q + +P++ + Sbjct: 675 DPTLSGSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNSTH 734 Query: 416 RQQLQRVQGATKAKKSEP 433 + L + + + + S Sbjct: 735 QGDLFQFRNSGASASSHD 752 >UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oenococcus oeni RepID=Q04E50_OENOB Length = 594 Score = 279 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 144/514 (28%), Positives = 244/514 (47%), Gaps = 20/514 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L R++RP+TF+D+VGQ + L N L ++ HAYLF+G RG GKTS+A++ A+ + Sbjct: 2 YKALYRQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 T ++ F D+IEIDAAS V++ R+L D YAP +FK+ Sbjct: 62 EGIPEDT-------------DRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKI 108 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP VKF+LATT+PQK+P TILSR +F +DV+Q Sbjct: 109 YIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQ 168 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 I +LE +L+++ IA++P AL+++A A++G LRDALS+ DQA+A G+V V + Sbjct: 169 IVKRLEFVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAVAITKTGRVELDDVFKIT 228 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DQ + ++ +E + I++ G + ++L L + + L A Sbjct: 229 GTSPIDQQIGFLQHALEKQTAKAFKDIHKLLLDGKDPIRFAEDLLVL---LKNLMLIKIA 285 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ L++ + + + ++ + +E+ Sbjct: 286 PELVSENAFNQIENLSKEFSNSVFEQAIDDVSDNLMKMKQTTRPELYLEIL--AVKIASR 343 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV-PLPETTSQVLAARQQLQ 420 + + + Q+ +P + V SA A P+ + ++ Sbjct: 344 LKKVDQKAIQAQTPSPAKTEMSSSAVLVNSNASSAESMASDFDNHPQAQVDIAEKNEKSN 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ +T+ S+ + + + V + + + + P + Sbjct: 404 QMPESTEKPASQNEEPLESPSLAKTDDDSAWQVMEAAVKSELQAVKDAWPDIVADFDESV 463 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 + V A+ K L + H + E AA+ Sbjct: 464 AMLAENSEPVAASQKGLIISFNHPELAEAAARTP 497 >UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma pneumoniae RepID=DPO3X_MYCPN Length = 681 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 133/507 (26%), Positives = 224/507 (44%), Gaps = 9/507 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL +K+RP F+D VGQ+ + + N ++ ++ H Y+F+G RG GKT+ A+++AK +N Sbjct: 3 KVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAIN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C C+ C+ I +D+ EIDAAS+ + D R+L +NV P + + KVY Sbjct: 63 CLNW-NGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HML+ S++ LLKTLEE P++V F+ ATT+ K+P+TILSRC F K + + I Sbjct: 122 ILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 242 + +L + +E I AL LA A+GSLRD LSL DQ + +S V Sbjct: 182 QQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFN 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD +Q +EA++ + ++ LI+ ++GI + L E+ L + + Sbjct: 242 LLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDLYGYVKTGQIA 301 Query: 303 GNDMAAI--ELRMRELARTIPPTDIQLYYQ-TLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++R + + + G +L + + V + A++ Sbjct: 302 VVKPSDQTMAAKLRFHPKQYAL--LVQAIEANTGYGPSQLSLSDQIKAIV-IHYNNAVSK 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P +P P V QS A + P P P + P+ +S V Sbjct: 359 EPHIPAYTPVVQTQSPAKEHVPSKTVEEAKPQLPAKEPVLYKVIEEPKVSSFVKDPVASK 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP-AKKEAYRW 478 Q T + T + + V + P + + + Sbjct: 419 LIEQPQTIVQPEAQQEITEVEQPTETSPAPATDLFGLAIKPEVVRKRGRRPLSVENTDFF 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEK 505 + + Q P L + ++ Sbjct: 479 QPAVKKLIQPVSKPAPIKLIEPSDNNP 505 >UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=Mycoplasma mycoides group RepID=Q2STA6_MYCCT Length = 669 Score = 278 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 200/374 (53%), Gaps = 2/374 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q L R +RP+ F V G + L + RI+HA LFSG RG GKTS+AR+ AK Sbjct: 4 NKQSLYRAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKT 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + C C+NC+ + + +D+IEIDAAS V++ R++ ++V P ++K Sbjct: 64 VNCLNLTGSKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIREIKNSVSTLPINSKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP + F+LATT+ K+P TILSRC F+ +D Sbjct: 124 VYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFTKIDKN 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++++L++I+N+E+ E L + +EGSLRDA+++ +Q + + D ++ + + ++ Sbjct: 184 SLKNRLQYIVNQENYQIEKEVLDEIFYLSEGSLRDAINILEQLMLATDDLITIKNLKSIF 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + L ++ + N +++ +A +G+ W+ + ++ +L I +L+ Sbjct: 244 LIATKQEQLQVIHQSLNNNTNFIISYFQKANDQGMNWDVFALGLIEILKEIIEYKLTNNI 303 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ + + I + L L + A + ++LL+ + + Sbjct: 304 EFLNILEEDE--AKQFINIDVNHLFLLSDNLAEAYFKTKAANISFNYLLLSLLKTINSNN 361 Query: 362 RMPLPEPEVPRQSF 375 + + + Sbjct: 362 KQENIQTINQNINN 375 >UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN5_MYCGA Length = 624 Score = 278 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 1/443 (0%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 +K+RP + ++GQ H+ L + ++ AY+F G+RG+GKTSI+++LAK NC Sbjct: 27 FYQKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYNCL 86 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 C C C I + + D+ E+DAA+ V++ R ++D + YAP KVY++ Sbjct: 87 NKKDGDVCNQCSACELINENKSQDIYELDAATNNGVDEIRKIIDAINYAPMNLSKKVYIL 146 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HMLS ++NALLKTLEEPP+HV F+ ATT+ K+P+T++SRC F+ K LD + + Sbjct: 147 DEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKLDKDDLVD 206 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L++++ +E I E A+ +A A GS RD LS+ Q + +++ + ++ G ++ Sbjct: 207 VLKNVVKQEKIKIEDSAIDKIADFASGSARDGLSILQQLAYDKNKKITVEKINETFGLIN 266 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + L +E + + + E+ + L+NE A+G + + ++L +L + + Q ++ Sbjct: 267 LEIKLEFLELINQHDLEKFVKLLNEIEAKGTNFVLFIQDLLAILIDLLVYQKVKSSSLLK 326 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + E + I + LL R + + + P + Sbjct: 327 VLDEEQVKAINLKNIKLLSLSEKINGLLSTRVS-QTNIKESLLLAVFDYLEQNPQPVVGN 385 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 V + + + + + V + + Q+ A + + + Sbjct: 386 NVEVVIKPKTKTTEQIQEKEEAKPQVEIKQKNENEKVVKVEQPNEQLKAKKVRSLPSEET 445 Query: 426 TKAKKSEPAAATRARPVNNAALE 448 + KS A + Sbjct: 446 ESSTKSTTNDQLDLSLDPTKAKD 468 >UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1M4_ACIFD Length = 635 Score = 276 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 149/613 (24%), Positives = 234/613 (38%), Gaps = 46/613 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RP+ F +V GQE V L ++ G + HAYLFSG RG GKTS AR+LA L Sbjct: 5 YQSLYRRFRPRRFGEVRGQERVTETLRRAVAEGHVSHAYLFSGPRGTGKTSTARILAMAL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C + +G D+ E+DAAS + V+ R + V AP GR++V Sbjct: 65 NCEAPVDGEPCLACASCEAVVRGSSADVEELDAASNSGVDSIRWITQTVAAAPV-GRWRV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS+ + NALLKTLEEPP HV F+LATT+P K+ T+ SR F + LD Sbjct: 124 YIVDEVHMLSQAASNALLKTLEEPPAHVVFILATTNPAKVLATVRSRTQHFAFRLLDDAS 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + + +L + AL + R GS RD LS+ +Q +A G V+ Sbjct: 184 VDALVAEVLEALGASLSDEALAYVRRRGGGSARDTLSVLEQVLALGG------VVNDAA- 236 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D A++L +A+ + + + + ++A GI+ L+ + + Sbjct: 237 ----DGAVALAQAIADGDLASAVRIASDAFEGGIDPTELVAD----------------TV 276 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 G+ AR + +TL L A D ++ V L ALA R Sbjct: 277 GDLGRRFVAEALAGARGAELARLSRPLETLGRLGAGLRDALDPQVVVLAGLAEALAPDAR 336 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + E V + P +P A +P + V Sbjct: 337 LSALEARVAALEADLAGAGHMPRPKPPTGEPLPARTTSPEPAGHSASPNVAEPETSQPET 396 Query: 423 QGATKAKKSEPAAA----------TRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + + ++ A+ Q V P Sbjct: 397 RERASRAPARGLQDARRGGDEHPGASTEQRPSSLDRVRAAFARNQQRADVDRGEPSEPVA 456 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + +P A E + A+ A + W V Sbjct: 457 TTPAPHGDDDQPAAAPDAHGSPVPSGLADEATRAAGPASLEARRQRLQARWFDDVMA-KA 515 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS----MLKGSTVELTI 588 P+++ + +A D + + + + LAE ++ E+ + Sbjct: 516 PRVLRPLLAHARLAIRDERIVVAVDN---RTVAERLVPHLAEIVALVGPDEFAEPPEIVV 572 Query: 589 VEDDNPAVRTPLE 601 + Sbjct: 573 DPGSSQTSSRAPA 585 >UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR Length = 1241 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 6/356 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + L++K++P F++++GQ V+ +L N +S GRI YLF G RG GKTS AR+ A Sbjct: 466 NIRSLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASA 525 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG--R 119 LNC + PCG C C + G+ DL E+D + ++ R LL + P G R Sbjct: 526 LNCMSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPLGSSR 585 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KV+LIDE H+L + A LK LEEPP+ V F+ TTDP +P T+ SRC ++ + Sbjct: 586 YKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFSKIK 645 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 I +L I NEE++ E AL L+A A+GSLRDA ++ DQ G +++T V+ Sbjct: 646 DRDIVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLG-KKITTSLVNE 704 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + D++ L L+E + + + + GI+ L+ ++ L+ I + Sbjct: 705 LVGDVSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGTYNV 764 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + I + A ++ + L K+L + DR TLL+ Sbjct: 765 VYAKHGDSLIGTQNLTEAE---LERLKHALRLLSEAEKQLRISSDRSTWFTATLLQ 817 >UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana RepID=Q9M9R7_ARATH Length = 1071 Score = 273 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 111/399 (27%), Positives = 186/399 (46%), Gaps = 8/399 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L++K++P F +++GQ V+ +L N + GR+ H YLF G RG GKTS AR+L+ Sbjct: 420 SIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAA 479 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARG- 118 LNC+ PCG C C + G+ DL+E+DA + E R LL + AP Sbjct: 480 LNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQ 539 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV++IDE H+L ++ +LLK LE P + F+ TTD +P TI SRC ++ + Sbjct: 540 RYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKV 599 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I +L I ++E++ E +AL L+A A+GSLRDA ++ +Q G +++ V+ Sbjct: 600 RDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMG-KRITVDLVN 658 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQ 296 ++G + DD+ L L+E + ++ + E G + ++ ++ L+ I + Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYK 718 Query: 297 LSPAALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ ++ + L K+L + DR TLL Sbjct: 719 ALDEKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL 778 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP 393 + + RQS + + Sbjct: 779 QLGSMPSPGTTHTGSSRRQSSRATEESISREVIAYKQRS 817 >UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR Length = 1190 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 114/587 (19%), Positives = 226/587 (38%), Gaps = 48/587 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +++ P+TF D+VGQ AL+N ++ Y+F G G GKTS AR+ ++ L Sbjct: 451 HQNLTQRYMPRTFRDLVGQNLAAQALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRAL 510 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC++ PCG C++C + G+ ++ E+ S + DLLDN+ + +++V Sbjct: 511 NCQSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRV 570 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L+ ++A+ K ++ P V F+L + LP I+SRC +F L Sbjct: 571 FIFDDCDTLAPDCWSAISKVIDRAPRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDAD 630 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V ++G Sbjct: 631 IIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQK-ISVPLVQELVG 689 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 690 LISDEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYDF 746 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + R ++ +TL K+L + D+ + LL+ Sbjct: 747 TKERPRRKFFRRNPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 806 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + +P+A + + + R Sbjct: 807 LLPSSSTETSFNHSPLALNNMGG-------------------------------RDIARK 835 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 G + + + N A+ + + ++ A A +W + Sbjct: 836 GGERVEMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTSVQ 895 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 + + E E+ K+ ++ L ++ L Sbjct: 896 TSDAVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREF-------------LYQEGKLI 942 Query: 543 AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + + V L S L + + +A + GS V + I Sbjct: 943 SVSFGAAPTVQLIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIR 989 >UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 Tax=Deinococcus RepID=Q1IWF5_DEIGD Length = 737 Score = 267 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 219/470 (46%), Gaps = 22/470 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++ RP + VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MS--ALYQRARPINWDQVVGQEHVKDVLKAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TG + PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-TGPSPKPCGECESCLAVRNGSHPDVLEIDAASNNSVDDVRDLREKVGLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRCQHYRFRRLTP 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + E + EP AL L+ R A+G++RD SL ++ +A+G V+ +V Sbjct: 178 EEIAGKLADLAEREGVRAEPEALNLIGRLADGAMRDGESLLERMLAAGT-AVTRVSVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V+ + + E G ++ ++ +L Sbjct: 237 LGLPPSERVRGIAAALVQGDAGMALTGAAELYRAGFAARTIVEGLVAACAEALHAELGLE 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 G + A + +R A +E +A + ++L AL Sbjct: 297 GAGLEGADVPRLLRLQAAL---------------DEQEARFARSADL---LSLELALTHA 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 A A ++ + + P ++V A + Sbjct: 339 LLAADAGGGGGMVGAAAPASLPADVAQRLNRLEKEVASLRMSGTRPAPANEVPAFEPGKR 398 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 R A +A A V + + + + + +++A + P Sbjct: 399 RGGPAGEAPARAETPAPMPAAVQGSWDDVVKAASMQLKAFIKTAQKHSEP 448 >UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and tau n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYE9_DEIDV Length = 762 Score = 267 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 211/476 (44%), Gaps = 20/476 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS ++ RP + +VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MSAI--YQRARPIRWDEVVGQEHVKDVLRAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC +G PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-SGPLPKPCGECESCLSVRAGSHPDVLEIDAASNNSVDDVRDLREKVSLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSRCQHYRFRRLTA 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + +E + EP ALQL+ R A+G++RD SL ++ +A+G V+ AV Sbjct: 178 EEIAGKLSGLAAKEGVRAEPDALQLIGRLADGAMRDGESLLERMLAAGT-AVTRVAVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V + + + G ++ ++ L +L + Sbjct: 237 LGLPPGERVRGIAGALVLGDAGSALQGAAQLYRDGFAARTVVEGLVSALGTALHAELGLS 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A + ++ A L + D++ L A Sbjct: 297 GERLEGADVPRLLKLQAA-------------LDEQEARFARSADQQSL---ELALTHALL 340 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + AP A ++ + + A Sbjct: 341 AADSGGAGSERAPASAPAAGIPADLVQRLNRLEKELRSLRAAGVTIPSAPTAPVADFDPV 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 +G ++ A + P A + + QA A K Sbjct: 401 ARRGPAPVREVAAQALGQVAPAAAPAAVQGSWADVVRQASMQLKAFLKPARMHAQP 456 >UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I3J8_POPTR Length = 965 Score = 261 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 172/361 (47%), Gaps = 6/361 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP++F ++VGQ V+ +L +S GRI YLF G RG GKTS +R+ A LN Sbjct: 292 RSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAAALN 351 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C + PCGVC C GR D+ E+D+ + + R L+ N P RFKV+ Sbjct: 352 CLSRE-YKPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKNASMPPISSRFKVF 410 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE H+L ++ +L +LE ++V F++ T + LP + +SR ++H + I Sbjct: 411 IVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDADI 470 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L +I EE + + AL +A + GSLRDA + DQ G +++ ++G Sbjct: 471 AGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQLSLLG-KRITMSLAHELIGV 529 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + DD+ L++ + ++ + E I+ L+ ++ L+ + + Sbjct: 530 VSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVL----AGKCQD 585 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 N R+ A + + L K+L + ++ + + LL+ + Sbjct: 586 NSSEVRRKFSRKHASEGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEASP 645 Query: 364 P 364 Sbjct: 646 M 646 >UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma genitalium RepID=DPO3X_MYCGE Length = 597 Score = 260 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 1/307 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +QV +K+RP F +GQE + L N ++ ++ + Y+FSG RG GKT+ A+++AK + Sbjct: 2 HQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC C CD C+ I +D++EIDAAS+ + D R+L++NV P + KV Sbjct: 62 NCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HML+ S+ LLKTLEE P +V F+ TT+ K+P+TILSRC F K + + Sbjct: 122 YILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 I +L I +E I E AL +A ++GSLRD LSL DQ D ++S V Sbjct: 182 ILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTF 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 +D + + ++A++ + + L+++ + G+ + L E+ L + Sbjct: 242 NIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNI 301 Query: 302 LGNDMAA 308 D Sbjct: 302 NVLDSTE 308 >UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J8L4_BLASP Length = 574 Score = 259 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 99/471 (21%), Positives = 196/471 (41%), Gaps = 31/471 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY V + K+RP + DV+GQ V T L N + R+ LF G RGVGK + AR+LA Sbjct: 6 SYIVWSLKYRPVRWEDVIGQMDVTTILRNSIEKNRLSQILLFLGPRGVGKNTCARILASE 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L+ F ++ EI VE + + +++ P G++K Sbjct: 66 LD----------------------SFSNVFEISGFLNHSVESICETIRKIRFYPKEGKYK 103 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +I++ + S+ SFN +LKTLEEPP HV F+ T+ K+ +I+SRC + + + + Sbjct: 104 ILIINDFNFFSQDSFNIILKTLEEPPTHVLFIFCATEKNKI-NSIISRCQVYEFRFISLR 162 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I L+ I +E I + AL L+++ GSL +AL+ ++ ++S + V L Sbjct: 163 DIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFYDQRKISRELVMEKL 222 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G LD +++ +++ +++ L+++ G+ + + + + + Sbjct: 223 GILDTSYYFKIIDYLLDQKISQILILLDKIFQFGVSSINFISGLTKHFRDLLLSKNPETL 282 Query: 302 LGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR--ALA 358 + + +R I + + + KE + R+ +E+ L++ Sbjct: 283 FLLKLKKKTIQFYIQQSRKIRSSFLINALRICRQMEKESLTYKNSRLTIEIYLIQLANCL 342 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS-----QVL 413 F + PE ++ P ++ Q + + + PE S Sbjct: 343 FSIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEE 402 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + Q+ + + + K E + + P + ++ ++Q Sbjct: 403 ISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEKKKIQYLQENW 453 >UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Tax=Thermaceae RepID=Q72HA7_THET2 Length = 529 Score = 258 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 186/374 (49%), Gaps = 20/374 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF +VVGQEHV L + GR+ AYLFSG RGVGKT+ ARLLA Sbjct: 1 MS--ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C+ PCGVC +C+ +++G D++EIDAAS VED R+L + + AP Sbjct: 59 AVGCQ--GEDPPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HMLS+ +FNALLKTLEEPP HV F+ ATT+P+++P TILSR F + L Sbjct: 117 KVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTE 176 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L IL E AL LLAR A+G+LRDA SL ++ + G ++ + V Sbjct: 177 EEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLE-GPLTRKEVERA 235 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + ++ + L G +L+ +L + A Sbjct: 236 LGLPPREALAEIAASLARGKTAEALGLARRLYGEGYAPRSLVSGLLEVFREGLYAAFGLA 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 P + L + L D + +E+ LL A Sbjct: 296 GTPLPAP--------------PQALIAAMTALDEAMERLARRSDA-LSLEVALLEAGRAL 340 Query: 361 PRMPLPEPEVPRQS 374 LP+P Sbjct: 341 AAEALPQPTGAPPP 354 >UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidopsis thaliana RepID=Q9SB72_ARATH Length = 815 Score = 256 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 10/402 (2%) Query: 2 SYQVLAR----KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 S++VL+R K+RP++F ++VGQE V+ L + + GRI YLF G RG GKTS +++ Sbjct: 233 SHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKI 292 Query: 58 LAKGLNC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A LNC + PCG+C C+ GR D++E D+ + R L+ + P Sbjct: 293 FAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPV 352 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 RFKV++IDE +L + ++ LL +L+ +H F+L T++ +KLP +LSR ++H Sbjct: 353 SSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFS 412 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + I +L I EE I + A+ +A ++GSLRDA + DQ G +++T Sbjct: 413 KVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLG-KRITTSL 471 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++G + DD+ L L++ + ++ + E I+ L+ ++ ++ I Sbjct: 472 AYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII--- 528 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + A + ++ + L K L + ++ + + LL+ Sbjct: 529 -AGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQL 587 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 + Q V ++ + A + Sbjct: 588 SNTDSSSFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEK 629 >UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=Q75K66_ORYSJ Length = 1023 Score = 256 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 113/553 (20%), Positives = 211/553 (38%), Gaps = 19/553 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF D++GQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 353 HQSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKAL 412 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ L+EI ++ D+LDNV +P + +V Sbjct: 413 NCHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRV 472 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++D+ + L +++ + K +E P V F+L + + LP I+SRC +F L Sbjct: 473 FIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECD 531 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 532 IVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISMSLVQELVG 590 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G+E AL+ ++ ++ I A Sbjct: 591 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDIL---AGTYAF 647 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++ +TL K+L + D+ + LL+ Sbjct: 648 TQERVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQL------ 701 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 P + +P S + ++T + +A P + Sbjct: 702 APDKQYVLPSSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLPRNANLGVDSDNN 761 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 T+ + ++ + + A A R++ Sbjct: 762 MAGTR----RGKGPAPTVQLMFSSRVNKSKAERSREQVLHAFESVLASAITLEIRYEPKD 817 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 +P +A + + +L +V N Sbjct: 818 DARAGHVPAISPYPEDSTSNVALRRSFTRHSSASS----RGENLIRRLQKDNVVHGANSN 873 Query: 543 AWKEESDNAVCLH 555 + + L Sbjct: 874 QTRWVQSDPHILT 886 >UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomonadales RepID=Q2NBW3_ERYLH Length = 521 Score = 253 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 163/506 (32%), Positives = 241/506 (47%), Gaps = 12/506 (2%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGVCDN 78 ++ LAN + R+ HA+L +G RGVGKTS ARL+AK LNC + G T PCG C+ Sbjct: 1 MVRTLANAIERDRLAHAFLMTGVRGVGKTSTARLIAKSLNCIGPDGQGGPTIDPCGQCEP 60 Query: 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 C I +GR +D+IE+DAAS T V+D R++++ V+YA RFK+Y+IDEVHMLSR++FNA Sbjct: 61 CTAIAEGRHIDVIEMDAASHTGVDDVREIIEAVRYAAVSARFKIYIIDEVHMLSRNAFNA 120 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP HVKFL ATT+ KLPVT+LSR +F L+ + + ++ + +E + Sbjct: 121 LLKTLEEPPAHVKFLFATTEVDKLPVTVLSRTQRFDLRRIPADLLQKHFGWVCEQEQVEA 180 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLGTLDDDQALSLVE 254 E AL ++A AAEGS+RD LS+ DQAIA DG+V+ V MLG D + Sbjct: 181 EDEALAMIAAAAEGSVRDGLSILDQAIAHADLDADGKVTATRVRDMLGLADKGAQRRMFG 240 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++E + + ++A I + + G+E AL+ + L HRI + QL + G + + Sbjct: 241 TILEGDAKALLAAIEDQYSLGVEPLALVRSQMELAHRITLAQLGGSLPGAVSEEEQAALT 300 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQS 374 + + +Q LL +E+ APD + +M LLR LP+P ++ Sbjct: 301 AWGEQLSQGQLHRLWQLLLKAYEEVKTAPDPLVSAQMGLLR---LLHASELPDPGKLVKT 357 Query: 375 FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPA 434 + + PP A A+ G A Sbjct: 358 LEILTANPPVQSPAPPPSDDPAATPTGEAGAEVPAPSDFASLVDRVEQAGHGFAASIMRL 417 Query: 435 AATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATP 494 + AS A + AL A ++ + A Sbjct: 418 QLRVIECEERRLVFSRASSYTEEIAPQLREALLAATGQRWQLEERDWVDAPPSLMEQAEA 477 Query: 495 KALKKALEHEKTPELAAKLAAEAIER 520 + +K + P +AA A Sbjct: 478 REEEKKARIDGHPLVAATKTAFPDAE 503 >UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabidopsis thaliana RepID=Q9FK71_ARATH Length = 900 Score = 252 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 7/397 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q +K+ P+TF D++GQ V+ AL+N ++ R+ Y+F G G GKTS AR+ A+ L Sbjct: 342 HQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARAL 401 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCGVC +C + G+ + E+ E+ LLD + + V Sbjct: 402 NCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFEN---LLDKTNIRQQQKQQLV 458 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + D+ +S +N L K ++ P V F+L + LP I+SRC +F L Sbjct: 459 LIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVD 518 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V M+G Sbjct: 519 IIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTR-ISVPLVQEMVG 577 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDIL---AGSYDF 634 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 D + R+ ++ +TL K+L + D+ + LL+ Sbjct: 635 TKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQY 694 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + + + V + +Q Sbjct: 695 LLPHSSSADASFNHTPLTDSDPSNHVVAGTRRDDSKQ 731 >UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IBG9_VITVI Length = 919 Score = 252 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 6/390 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF +VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L Sbjct: 267 HQNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARAL 326 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C + G+ ++ E+ S E +LLDNV + +++V Sbjct: 327 NCPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRV 386 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ LS ++A+ K ++ P + F+L ++ LP I+SRC +F L Sbjct: 387 FIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDAD 446 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I +E + + AL+L+A ++GSLRDA +Q G +S V ++G Sbjct: 447 IIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 505 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + E G+E AL+ ++ ++ I + + Sbjct: 506 LISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDIL----AGSYD 561 Query: 303 GNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 R A ++ +TL K+L + D+ + LL+ Sbjct: 562 FTKERLRRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 621 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPP 391 M + + A + Sbjct: 622 YMLPSSSADTNRKKHAGSGMARQQSSAHSA 651 >UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MFK9_9FIRM Length = 335 Score = 252 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 143/346 (41%), Gaps = 26/346 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++F +VVG + ++ + G+I HAYL +G G GK ++A+ AK L CE Sbjct: 7 KSFDNVVGHKKIIQHFEEAIQTGQISHAYLLNGEDGSGKMTLAKAFAKALLCEK---HEG 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR+ + G DLI I +V++ R + + + P +K+Y++D+ Sbjct: 64 CGQCTPCRQADTGNHPDLIYITHEKYEIRVDEIRQGINETIDIKPYSSNYKIYIVDDADR 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + NALLKTLEEPPE+ LL T + +L TILSRC+ L + +QIR L Sbjct: 124 MNVGAQNALLKTLEEPPEYAVILLLTNNKDRLLETILSRCVCMSLGTVPEDQIRDYL--- 180 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 +EH + + + G+L A+ + + MLG + + Sbjct: 181 --KEHTQADEDMIDFAVSFSLGNLGKAVHVAETKEFHE----MLNEALGMLGYIHHIELH 234 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + + L M + +++ + + Sbjct: 235 EMIS------------YLKTLTKYKEQIYDFLDIMTDWYRDMLILKTTGSVNLLIFKDKY 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +++E I + + R L + + +EM LL Sbjct: 283 RQLKEQEIYITFEGLTHIMDEIQKARVRLNANVNFEVTMEMLLLTM 328 >UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=Clostridium thermocellum RepID=A3DH83_CLOTH Length = 329 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 146/346 (42%), Gaps = 22/346 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++GQ+ V+ +L + RI HAY+FSG G+GK+++A++ A L C+ Sbjct: 1 MDFNSIIGQKSVVESLKRFIDNNRIGHAYIFSGPEGIGKSTVAKIFASILMCDDAAVDKS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR E D ++ V++ R+L ++ P + KVYLI E + Sbjct: 61 CGNCRSCRLFENRTNPDFGVLETRGLSIGVDEIRNLQQDICIRPLYSKRKVYLIREAEKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N LLKTLEEPPE+ +LAT++ + L TI SR ++ + ++++ + Sbjct: 121 TVQAQNCLLKTLEEPPEYAVIILATSNYESLLETIRSRSVRINFAKNTFDEVKRFIVSRA 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + +A A+G + A+ L + + + A + G Sbjct: 181 -----GGDFEQADFIAAYADGVIGRAVELMESERFKELREKAIDAAVRLSG--------- 226 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ E ++ + + +++L +L + M + + Sbjct: 227 -------SDFEDMLNISRMFDENKEDVDSILDVILLFYRDLLMAGKFGNEKLLINSDKKD 279 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A + + + R+ + + ++ VE+ L++ Sbjct: 280 IILKYAGRFSAGKLLNNIEIIEETRRNIKQNANYQLAVEVMLMKLQ 325 >UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSU9_9BACT Length = 454 Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 118/291 (40%), Positives = 166/291 (57%), Gaps = 16/291 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R +T +VVGQ+H+ L L RI HA+LF+G RG GKTSIAR+LA Sbjct: 1 MS-QALYRKYRSRTLDEVVGQKHITDVLLKALQHKRIGHAFLFTGPRGTGKTSIARILAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N + +D++EIDAAS +++D RDL + V AP F Sbjct: 60 AINDLPYENDS--------------LHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAPF 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ SFNALLKTLEEPP HV F+LATT+ KLP TI+SR +FH + + Sbjct: 106 KVYIIDEVHMLTGESFNALLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 ++ L HI +E+I + AL+L+A EGS RD++SL DQ + +GD V+ + + + Sbjct: 166 AEVAKHLSHIAEQENIKIDEDALELIAEHGEGSFRDSISLLDQLGSVAGDEHVTAKMIES 225 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 LG + L+E + L++ G L+ ++L L Sbjct: 226 TLGLAPRARVEKLIELTEAHDIGGATKLLDNLEKVGTSPTVLVNQLLKALR 276 >UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 Tax=Arabidopsis thaliana RepID=Q9SN33_ARATH Length = 1057 Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 96/425 (22%), Positives = 175/425 (41%), Gaps = 20/425 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+ P+TF D++GQ V+ AL+N ++ ++ Y+F G G GKTS AR+ A+ L Sbjct: 430 HQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARAL 489 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C +C + G+ ++ E+ E DLLD ++ +V Sbjct: 490 NCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP-RV 548 Query: 123 YLIDEVHMLSRHSFNALLKTLEE-PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 ++ D+ LS +NAL K ++ P HV F+L + LP I+SRC +F L Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM- 240 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V + Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELV 667 Query: 241 -------------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +G + D++ + L++ + A+ + + +E AL+ ++ Sbjct: 668 SIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLAT 727 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 ++ I D + R+ ++ +TL K+L + D+ Sbjct: 728 VITDIL---AGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLT 784 Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + LL+ + + + ++ Sbjct: 785 WLTAALLQLAPDQNYLLQRSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNR 844 Query: 408 TTSQV 412 + Sbjct: 845 PAVEE 849 >UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=4 Tax=rosids RepID=D1H1L3_VITVI Length = 875 Score = 248 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 168/384 (43%), Gaps = 5/384 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L++K+RP+ F ++VGQ V +L +S GRI YLF G RG GKTS +R+ A Sbjct: 151 SPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAA 210 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG+C C GR D EID + R L+ + P RFK Sbjct: 211 LNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFK 270 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ +L +L++ P+HV F++ T KLP + +SR ++H + Sbjct: 271 VFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDA 330 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I EE + + AL +A + GSLRDA + DQ G +++ ++ Sbjct: 331 DIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLG-KRITMSMTYELI 389 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + DD+ L L++ + ++ + E I+ L+ ++ L+ I + Sbjct: 390 GIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDIL----AGKC 445 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L K+L + ++ + + LL+ + Sbjct: 446 QEGTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQLSSVES 505 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMT 385 V Sbjct: 506 SFLDANDSRAFLRTEHPRGENVKR 529 >UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau subunits n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A1 Length = 489 Score = 248 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 111/295 (37%), Positives = 169/295 (57%), Gaps = 17/295 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R ++ +++VGQ+HV + L L ++ HAYL +G RG GKTS+AR+LA Sbjct: 1 MS-QALYRKYRSKSLSEIVGQDHVTSLLDRALESNKVAHAYLLTGPRGTGKTSVARILAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +D+IEIDAAS V++ RDL + AP + + Sbjct: 60 KITGLPYDIED--------------NNLDIIEIDAASNNGVDNVRDLREKALVAPIKSQK 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLK +EEPPEHV F+LATTD K+P TI+SR +++ + +D Sbjct: 106 KVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQRYNFRLIDE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQAVS 238 + L I EE I + AL L+A GSLRD++SL DQ S +G+++ V Sbjct: 166 STVADHLAFIAKEESIKIDTDALNLIAERGGGSLRDSISLLDQIQHTESKNGEITRSDVE 225 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 A LG D+ ++ EA++ + +++ + + RGI ++ ++ + R Sbjct: 226 ASLGLATKDEINAIGEAILSGDALKIITAVRQPELRGIGAVSVADQLYNWIQRNL 280 >UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae RepID=B9F6D9_ORYSJ Length = 1050 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 106/564 (18%), Positives = 207/564 (36%), Gaps = 10/564 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L +K+ P+TF DVVGQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 349 HRSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKAL 408 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ ++EI ++ D+LDNV +PA ++V Sbjct: 409 NCHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRV 468 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L +++ + K ++ P V F+L + + LP ILSRC +F L Sbjct: 469 FIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECD 527 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 528 IVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISLSLVQELVG 586 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G++ AL+ ++ ++ I + Sbjct: 587 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRE 646 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + R ++ +TL K+L + D+ + LL+ Sbjct: 647 RLR---RKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQY 703 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + + + Sbjct: 704 VLPSSSSTSLNHGVLAGSFPDRDMAIHSALEHNGNMASTSYRERRPVEHTSNSHLLSTSA 763 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 A + ++ +++ + + S + Sbjct: 764 PRANEQSRNSKIENELIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTVQLIFSSRVN 823 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV----SQLSLPKLVEQ 538 + +A + L E+ + + + A ++ S L Sbjct: 824 KSKAENYRGQILQAFESVLRSAIILEIRYE-SKNDVRASHAPAVFSHGENESSNTTLRRS 882 Query: 539 VALNAWKEESDNAVCLHLRSSQRH 562 ++ + L+ + Sbjct: 883 FTKHSPLSSGGENLRRRLKKDRAS 906 >UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MVQ4_RHDSA Length = 370 Score = 244 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 161/282 (57%), Gaps = 2/282 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ K+RPQ F +++GQ L ++ +I AYLF G G GKT++AR++AK Sbjct: 4 NHNPFHLKYRPQNFTNIIGQNSATNYLQLAIAAKKITFAYLFVGQHGSGKTTLARVMAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + TPC VC+NC I GR D EIDAA T +E+ R++++ VQY+P ++K Sbjct: 64 INCTSSKN-TPCNVCENCVNIHLGRSFDFYEIDAAKNTGIENIREIIEKVQYSPIMSKYK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +IDE HMLS ++FN+LLKTLE PP + F+L+TT K+P TI+SRC + + + + Sbjct: 123 VCIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDH 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + + ++ E + + ++ L + +GS RDAL++ + + G+ +++ +++S Sbjct: 183 DLIIGITKVVYNEKLRITNKGIENLIKITKGSFRDALNIVE-LFSVGEKKITAKSLSDKY 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + L+E ++ N V+ +I+ E ++ Sbjct: 242 LIIPIAITNLLIEKVLSLNILEVLTIIDYIQFNNWNEEDVID 283 >UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CSD7_9FIRM Length = 336 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 25/346 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++G E V+ L N + G++ H+Y+F G +G GK +A A L CE PC Sbjct: 11 FDSIIGHEDVVEHLKNAIETGKVSHSYIFYGDKGAGKKLMASTFAMALQCEKD-GFEPCQ 69 Query: 75 VCDNCREIEQGRFVDLIEIDAAS--RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHML 131 CD+C++ D+I++ +++ R L+ +V P +K+Y+I E + Sbjct: 70 TCDSCKKALGKNHPDIIQVTHEKPNSISIDEIRQQLILDVDIKPYNSEYKIYIIPEADKM 129 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKT+EEPP + +L T + L TI SRC++ +K +D ++ L Sbjct: 130 TPQAQNALLKTIEEPPSYAVIILLTENVDGLLPTIQSRCIRLDMKVVDDALVKDYLM--- 186 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 EH+ ++ A A+GS+ A +A S D T+ V +L ++ + Sbjct: 187 --EHLQVPDYQAEVDASYAQGSIGKA----KEAATSEDFAKMTENVLHILKNVNRMEVFE 240 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 LV+A+ E + L M+ + M + + Sbjct: 241 LVDAI------------KEISQDKQNVNDYLDMMMFWFRDVLMFKATREIDNLVFKQEIN 288 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +RE A ++ + L + L + + +E+ L Sbjct: 289 YIREQASERSYEGLEKILEALEKTKTRLRANVNFDLAMELLFLTIR 334 >UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1 Tax=Sorghum bicolor RepID=C5YTM4_SORBI Length = 1074 Score = 237 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 178/425 (41%), Gaps = 47/425 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F ++VGQ +L+N ++ RI AYLF G RG GKTS AR+ + LN Sbjct: 409 RSLSQKYRPRAFPEIVGQNIAAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALN 468 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C T PCGVC+ C + G+ +L E+DA++R + + LL+N+ + R+KV+ Sbjct: 469 CLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISIIKHLLENLPPSAPLSRYKVF 528 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM ++A +K L+EP V F+ T DP LP ++SRC ++ + Sbjct: 529 VVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKDIDT 588 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ +L Sbjct: 589 VCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLLAG 647 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 L ++ + G + + +A+G Sbjct: 648 L------------------------------------IMDIIAGTYKLADVACCNGSAVG 671 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +Q + L K++ + +R LL+ H Sbjct: 672 GRSLTEAE----------LERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSSD 721 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + ++ + + S A + ++ ++ Q + Sbjct: 722 MNQQKCSTQEHHKLTNDAMSEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIA 781 Query: 424 GATKA 428 + Sbjct: 782 SHSSQ 786 >UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF5_ORYSJ Length = 799 Score = 235 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 168/355 (47%), Gaps = 5/355 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L +K+RP+ F+++ GQ V +L++ + G++ YLF G G+GKTS AR+ A Sbjct: 147 SARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAAS 206 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG C+ C I G +IEIDA+ LL N PA FK Sbjct: 207 LNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFK 266 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++D+ + + + ++ +LE P+ F++ T+D KLP + C + +D Sbjct: 267 VLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEA 326 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I E + E AL+L+AR A GS+RDA+ + DQ G ++S ++ Sbjct: 327 EIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLG-KRISKSVTYDLI 385 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+ ++ ++ E + ++ LL ++ L+ I + Sbjct: 386 GDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDIL----AGRH 441 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ + + I ++ + L K+L ++ + LL+ Sbjct: 442 QSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQF 496 >UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_ANIW141I9 RepID=B3T5E1_9ZZZZ Length = 480 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 122/561 (21%), Positives = 220/561 (39%), Gaps = 87/561 (15%) Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 NCREI + R +D++EID AS +++ R+L +N++++P FKVY+IDEVHML+ +FN Sbjct: 6 NCREITESRSMDVLEIDGASNRGIDEIRNLRENIKFSPMNANFKVYIIDEVHMLTTQAFN 65 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALL+TLEEPP H KF++ TTD K+P TI+SRC +F + I ++++IL+EE I Sbjct: 66 ALLRTLEEPPPHGKFIMCTTDIHKMPATIISRCQRFDFNRISSTIISDRMKYILDEEKIK 125 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ +L ++R A+GS+RDALS+ DQ I+ ++ + +S++LG + D +L A+ Sbjct: 126 YDSESLAAISRKADGSMRDALSILDQVISFAGEKIEFEQISSILGLIPYDLYFNLTTAIK 185 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-AALGNDMAAIELRMREL 316 E N E ++ ++ + G E ++ + L + + + + ++ R Sbjct: 186 EKNAESLVQVLKHIRSLGTPLEDVVNGLNQHLRNLLIGTVQGAESSLEVNPDLQERYTAE 245 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFA 376 A+ D+ + Q L A ++ +EM LL+ L + + R Sbjct: 246 AKNWERRDLIRFSQVFSKLEPTLRRAAQPQILLEMNLLKMLEMDQCVSIENMLNNRTQNI 305 Query: 377 PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAA 436 P + Q + + + V + + A + AA Sbjct: 306 PASK---------------PVQYEIPEVIEKMPTSVSSQNIIDDKKVENKSAPIKKEAAN 350 Query: 437 TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKA 496 + N AL+ ++ Q +++ + A + V Sbjct: 351 PEKKNKVNGALDLKTIKSNWHQMITKIGSIKTSVAMVLEHTLPMELNNKILDVAVVDQPR 410 Query: 497 LKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHL 556 L + Q+ N + E D ++ + Sbjct: 411 F-------------------------------SLERLERNRQLIENTFAEIFDQSIRITF 439 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 L N Q+++ D P + T Sbjct: 440 ------LFNEDIQEEIKH--------------EIPDAPGIIT------------------ 461 Query: 617 SIIADNNIQTLRRFFDAELDE 637 D + + FD E+ Sbjct: 462 --KGDPVLNRVIEIFDGEILR 480 >UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 Length = 331 Score = 234 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 24/346 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F+D+ G E + L + +S+G++ HAY+ SG G GK IA A+ L CE G PC Sbjct: 3 NFSDIYGYETIKEHLQSAISMGKVSHAYVISGGLGSGKKLIASTFAQTLQCEAG-GVEPC 61 Query: 74 GVCDNCREIEQGRFVDLIE--IDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHM 130 GVC +C + D+I + V+D R L+ ++Q P +K+Y+IDE Sbjct: 62 GVCHSCVQAAGRNQPDIIWVGHEKPGSIGVDDIRDQLVSDMQIKPYSSPYKIYIIDEADK 121 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LKT+EEPP + +L +P TILSRC+ LK L + + L+ Sbjct: 122 LTVAAQNAMLKTIEEPPAYGIVILLANNPDVFLQTILSRCVVLDLKPLKDDIVIKYLKDH 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + + AR A G + A+++ + + + + Sbjct: 182 YDN----ISDYECKFAARFAAGRIGRAMTMVESTEFAELRR----------------DVM 221 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 +++ + + +M + + + L ML + M + + Sbjct: 222 DVIKNAKDMDSTDIMTSVKRVTNYKLTIDDYLDLMLMWYRDVLMFKSTNDTNLLIFNDQM 281 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ A+T+ +Q ++ + L + + +E+ ++ Sbjct: 282 TLIKSQAQTMSYEGLQDIINSIDRVKVRLQANVNFDLVIELLIMAI 327 >UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZS9_HALOH Length = 326 Score = 234 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 141/346 (40%), Gaps = 25/346 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F +++GQ + L L RI+HAYLF+G GVGK +A A+ +NC + Sbjct: 1 MGFNEIIGQNGAIKILKEELRDNRINHAYLFNGRDGVGKKLLAFQFARAINCHNKVD-DS 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C C++I+ DL I+ + K++ R+ + Y P + K+Y+ID + Sbjct: 60 CGQCMACKKIDHFNHPDLKLIEPVNNSIKIDQIRNFQKEIVYKPYESKKKIYIIDGADTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLKTLEEPP + +L D KLP TI+SRC Q L + E I+ L Sbjct: 120 TLEAANSLLKTLEEPPHYAVIILLVEDLNKLPSTIISRCQQIQLSNIAREIIKEYLI--- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + L+A A GS+ DAL L ++ + + + ++ Sbjct: 177 ---NKGIGDKKAHLIATLARGSIGDALKLVEK-----------EDILLI-----REELFD 217 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + + + L + G I Sbjct: 218 FLCNLTHLRAVDIFNKSQQMVDWFQQDLPLFDLISGWFKDIIFYNQGIKD-NIVNYDFID 276 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ AR ++ + + RK + + + +++ LL+ Sbjct: 277 KIEVQARNYRTEELISIIELIGETRKYIKANVRKDLALQVMLLKIR 322 >UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=Alkaliphilus RepID=A6TJF9_ALKMQ Length = 329 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 139/345 (40%), Gaps = 22/345 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ HV+ L + + H Y+F G G+GK +A LAK L C TG P Sbjct: 1 MAFENIVGQAHVIKLLKQSIKQNTVGHGYIFEGIEGLGKHLVAFELAKALCC-TGTGDQP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 C C++C+++ D+I I K+ RDL + Q P R KVY+I++ ++ Sbjct: 60 CNQCNSCKKLSHQNHPDVIWITGEGSIKINTIRDLQKDTQQKPYESRKKVYIIEKAEKMT 119 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKTLEEPP +V +L T + L TI SRC + + ++ I+ L L Sbjct: 120 VQAQNALLKTLEEPPSYVTLILLTANSHSLLPTITSRCQIIKFQPVPLDVIQAFLM--LE 177 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + + +L+A + G + AL L + + + + Sbjct: 178 K---NVDLEKAKLMATLSNGVVGKALKLLEDPSFQNQR----------------EGLIQI 218 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + + + + + E +L L + + + + + Sbjct: 219 SKDLFKKDKVAALQKFSFFEDHKESIEEILELYLVWYRDLLVYRDTQNKVLMFNIDQVEE 278 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + I I + ++ + ++ +E+ LL Sbjct: 279 IISQSNRIDLKKISNIISIIENTKENVRRNVQFQLNIEVMLLNIQ 323 >UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2Q8_DESAS Length = 358 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 79/351 (22%), Positives = 146/351 (41%), Gaps = 22/351 (6%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ ++G + ++ L ++ GR+ HAYLFSG GVGK + A L+ L C+ + CG Sbjct: 29 FSQIIGHKSLIRGLEQAVATGRVAHAYLFSGQHGVGKKTTALALSASLLCDFNRSGDACG 88 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +CR++ G DL I K+E RDL +Y + + ++++ID+ ++R Sbjct: 89 KCTSCRQLVNGNHPDLHIISPDGASIKIEQIRDLQQKARYKSYQNKHQIFIIDQAEGMTR 148 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N LK LEEPPE F+L + +P+ L T++SRC K L +E+I L + Sbjct: 149 EAANCFLKILEEPPEQTVFILISAEPELLLPTVISRCQPMSFKDLGLEEISSLLIQLS-- 206 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + E L A+ A GS+ ALS + ++ + L Sbjct: 207 -GVNQEKAGLA--AQMARGSIGRALSYFNDDQQYKLREL----------------VIRLS 247 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 ++ + ++ + E + + +L + + + + S + Sbjct: 248 QSTRRSAISLLLQEVEELLGKKVNIFEMLEMLSLWYRDLLIWKSSHNEKLVFNRDKLDVI 307 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 A + + + + +L +RR +++ LL Sbjct: 308 DTEAEHYTLEKLVNALEMSEMTKYKLMRNANRRAALDVLLLSLTRLGRGEH 358 >UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KMD2_9FIRM Length = 331 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 140/334 (41%), Gaps = 25/334 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPC 73 F DVVG ++++ + N ++ + HAY+ +G RG GK +A L A L CE C Sbjct: 4 FKDVVGHKNIIKYIQNAVTADAVSHAYILNGERGSGKKLLANLFAMSLQCENRDEDGDAC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHM 130 G C +CR+ G D+I I V D R + D++ P ++K+Y+I + M Sbjct: 64 GKCRSCRQAAGGNQPDIIRIMHEKPNTIGVGDIRTQVNDDIMIRPYSSKYKIYIIADADM 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLKT+EEPPE+ +L T + + L TI SRC+ L+ + + ++ L Sbjct: 124 MSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMMKLRNIKDQLVKKYLM-- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + + A+G++ A+ L + ++ + V Sbjct: 182 ---EQLEVPDYKADVCVAFAQGNMGKAIMLANSEYF---NEIKEEVVH------------ 223 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + E +M + +E L + + + + + + + Sbjct: 224 -LLRNIDEMTVPDLMEAVKRCMIYKMEISDYLDMIAIWYRDVLIYKATRSVDRVVFSDQM 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 +RE A+ I+ +L + + + Sbjct: 283 KYIRERAKKSSYEGIENILDSLEKAKARMKANVN 316 >UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC30A0 Length = 329 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 150/344 (43%), Gaps = 25/344 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + ++G E++++ L + +S+ +I+HAY+F+G G GK +A+ A+ L CE CG Sbjct: 5 SKIIGHENIISQLISAVSMSKINHAYIFNGPDGSGKNMLAKAFAQALLCEK-QGPEGCGE 63 Query: 76 CDNCREIEQGRFVDLIEIDAASR--TKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLS 132 C C++ E G DLI I + V+D R+ L+ ++Q P G +KVY+IDE L+ Sbjct: 64 CHFCKQTESGSNPDLIYIRHSKENIISVDDIRESLVQDIQIKPYNGLYKVYIIDEAEKLT 123 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKT+EEPPE+ + T + TILSRC+ F+LK L + I L Sbjct: 124 VQAQNALLKTIEEPPEYSVIIFLTNNADIFLQTILSRCIVFNLKPLRDDVITDYLIKT-- 181 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 ++ + A+G L A+ L + +G + A+ L Sbjct: 182 ---YKIADYEAKVCSSFAQGILGKAIRLFESEDFNGVK----------------EAAVRL 222 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 V+ + ++ + + + + + + + +++ Sbjct: 223 VKNIYSYEIYDLIEEVKMISQNKVNINDFIDILEMWYRDVILFKVTKDPNNLIFKDEINY 282 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +R+ A ++ I + + + + +E+ LL Sbjct: 283 IRKSASKSSYEGLENIINGCEIAKSRIKANVNFDLAIELMLLNI 326 >UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D691_PELTS Length = 335 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 140/353 (39%), Gaps = 23/353 (6%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 ++VG + AL N ++ GR+ HAYLF+G GVGK + A A+ L C CG Sbjct: 4 LREIVGHRQITGALMNAVACGRVAHAYLFAGPAGVGKKTTALAFARALLCPVPEGGDACG 63 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C CR++E DL ++ + K+E R+L Y P +G K++LI ++ Sbjct: 64 TCRQCRQVEHRNHPDLYIVNPSGATIKIEQIRELQHRAPYRPYQGGRKLFLICRAETMTA 123 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N LLKTLEEPP +L + PQ L T+LSRC Q K++ + ++ L Sbjct: 124 EAANCLLKTLEEPPHDTVLILVSDQPQSLLPTVLSRCQQCFFKSIPLSELSGSLTA---- 179 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 L A + GS+ AL+ ++A A + Sbjct: 180 -RHGLAQEEALLAAAMSGGSMGKALAYASGSLAERRNAAGALAGALKTA----------- 227 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + + E +L ++ + + + + A A + Sbjct: 228 ------GPLEALEMAGKISEDREEALLILEMLICWFRDLLVYRETEDAALLFNADRAGLV 281 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 ++ A++ P + + + R ++ R+ +E LR P Sbjct: 282 KKEAQSFQPGRLVEIIEDIEATRNKIEANASTRLALEALFLRLSGGACAQEAP 334 >UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J0K7_DESRM Length = 335 Score = 228 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 145/344 (42%), Gaps = 22/344 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++++G + ++ L N + R+ HAYLF G G+GK ++AR A+ L CE C Sbjct: 3 RLSNIIGHQQIIQTLKNAVQKSRVAHAYLFMGPPGIGKQTVARSFAQVLLCEAPQGGDAC 62 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C +CR+ + G DL + + K+E R+L VQY P +G V+++++ ++ Sbjct: 63 GNCKSCRQTDGGNHPDLHLLRPSGVTIKIEQIRELQRQVQYKPYQGIRHVFILEKSETMT 122 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + + N LKTLEEP F+L + P L TILSRC Q ++L +++ L + Sbjct: 123 QEAANCFLKTLEEPGSATVFILLSDQPYGLLPTILSRCQQLQFRSLSNQEVSEGLRVLCQ 182 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + LA A GS+ A+ L ++AL L Sbjct: 183 -----VARDRAEELAPLASGSIGRAIQLAGGEDQW----------------PLREKALWL 221 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 V+ + + + + E + L ML + + + Sbjct: 222 VQRFPQMSQYQALQAAEELSNDRSAAVEALEIMLLWFRDLLVYHYTRQKEILINQDKIDT 281 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + E P+ + + + + ++ L + RM +E+ +L+ Sbjct: 282 LLEQENWYAPSKVVEIIEEIKLAKERLMANANTRMALEVMMLKI 325 >UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS16_9FIRM Length = 330 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 150/349 (42%), Gaps = 25/349 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F +++G E ++ + + LG+I Y+ +G G GK ++ R L K L CE G T PC Sbjct: 4 FTEIIGHEDIIRHFKSSIELGKISQGYIINGETGSGKKTLTRALVKTLQCEEGGT-EPCN 62 Query: 75 VCDNCREIEQGRFVDLIE--IDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHML 131 C +C + E G D+I D + VE+ R + ++ P R+K+Y+I++ +L Sbjct: 63 HCKSCLQCETGNQPDIIWVTHDKPNVISVEEIRDQVNSDIDIKPYSSRYKIYVIEDAQLL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ NALLKT+EE P + +L T + K+ TI SRC+ ++K + I L + L Sbjct: 123 NVNAQNALLKTIEEAPSYAIIILLTNNIDKMLQTIQSRCIVLNVKPVREHDILDYLMNEL 182 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + A+G+L A+ L A + ++ V Sbjct: 183 K-----LDKQKADFCMDFAQGNLGKAIRL---ATSDEYREIKENVV-------------K 221 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + E + + ++ I ++ + M+ + M+++S Sbjct: 222 IMRHLREMSVDDMLFAIKNMELYKLKISDYIDLMMMWYRDVLMLKVSNNPGRLMFKEYYS 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +R+ + I I+ +++ + L + +E+ LL Sbjct: 282 DIRKQSSHISYEGIEKVLKSMDKAKVRLEANVSFDIAMELMLLTMKENC 330 >UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax=Thermoanaerobacteraceae RepID=B0K122_THEPX Length = 324 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 30/348 (8%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 +R + G E VL N +S +I +AYLF G G+GK +A A +NC+ G T Sbjct: 2 YR------IYGHETVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINCK-GET 54 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 A PC C +C ++ D+ I KV+ R + + + P K+++ID+ Sbjct: 55 AKPCFKCSSCLKVMDKNHPDVFFIKPEENSIKVDTIRYITNEINIRPYEANKKIFIIDQA 114 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + NA LKTLEEPP + F+L + Q+L TI+SRC + I++ L Sbjct: 115 DKMTAAAQNAFLKTLEEPPLYGLFILIASQQQELLPTIVSRCNIVRFNKENRNTIKNYLM 174 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 EH E A ++LA A+G+ A LT+ + + + Q + +L Sbjct: 175 F----EHDISEKEA-EVLAHIADGNFAQANKLTNNEYLNFRRE-TIQEIEKILTI----- 223 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 G V+ E +L +L + + + + + A Sbjct: 224 -----------KGFEVIEEFEFFDKNKDNIEEILKILLSYMRDLLVFKATKDASFIKNID 272 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 R++E+ + + + ++ + ++ VE L Sbjct: 273 FLNRIQEMESRLTINKLNNIINRIEQFNSQINSNINYQLAVENLFLDM 320 >UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 Tax=Corynebacterium RepID=C8NR93_COREF Length = 704 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 115/552 (20%), Positives = 193/552 (34%), Gaps = 75/552 (13%) Query: 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 +D+ E+DAAS V+D R+L + YAPA R++V++IDE HM++ FNA+LK +EEP Sbjct: 10 NLDVTELDAASHNGVDDMRELREKAHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEP 69 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PEH+ F+ ATT+P K+ TI SR + + L +R LE E + + L+ Sbjct: 70 PEHLIFIFATTEPDKVIGTIRSRTHHYPFRLLTPGAMRGLLERTCRAEGVHVDDAVYPLV 129 Query: 207 ARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 RA GS RD+LS+ DQ +A +G +S ++ +LG D + + A+ + + Sbjct: 130 IRAGGGSPRDSLSILDQLLAGAGPDGLSYESALPLLGVTDFTLIDAAITALATDDKAGMF 189 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN----DMAAIELRMRELARTIP 321 A I+ G + ++L L + ++Q P A + + A Sbjct: 190 ATIDRVIEAGHDPRRFATDLLDRLRDLMILQTVPEAFDLGLVDAPTDRAQVLTDQAAMFS 249 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 ++ + G +L A R+ +E+ +R L + Sbjct: 250 GNELATLASMVNTGLADLRGATSPRLLLEILCVRLL-----------------LSRGQVA 292 Query: 382 AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 V+ P QP +A APT P + A+ + + +P P Sbjct: 293 QVIAPAVGATQPAAAGT-APTFSGPGGAAAAARAKALAASQSYGQRPEPKKPEPEPVKEP 351 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 A E + PVP + A P ++ K K+ + Sbjct: 352 EPAPAPEPAPEPVKAPEPAPVPEPAPEPEPATPAVPTADLLPTIRSKWAQLRTLVGKENI 411 Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS-- 559 E + + + L + Sbjct: 412 RTEI--------------------------------MLTEAKVLGIRQDTLVLGHSTGAL 439 Query: 560 QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA------------------VRTPLE 601 LN + L L G+ + + V +P+ TP E Sbjct: 440 ANRLNAPEHNEVLVTVLERELGTRLAVECVVGTDPSAVGFTTTSQPEQPTWNPTRPTPQE 499 Query: 602 WRQAIYEEKLAQ 613 Q Sbjct: 500 QSAQQQMPSQPQ 511 >UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVI5_9BACT Length = 354 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 16/354 (4%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +FA ++GQE VL+ N L R+ HAY+F+G G+GK AR LAK + C++G Sbjct: 8 MSFAKIIGQEQVLSLFKNALKNERLAHAYIFAGQEGIGKMLFARELAKKIFCQSGKIDGA 67 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 C C+ C+ I+ G F D+ + K+E + L + + P + K+ +I++ Sbjct: 68 CDNCNICKRIDAGNFTDIFFLLPEKNHRVIKLEQLKYLQEILFVKPLESKHKIVIIEDAD 127 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLKTLEEPP + LL T + + TI SRC L ++ + + L Sbjct: 128 KMNEEASNCLLKTLEEPPLYAIILLIVTSLESVSETIKSRCQVVRFSPLSLKAMENILTD 187 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + + LA + GSL+ A + A A + + + + + Sbjct: 188 -----RFQLDKQLAGQLALISGGSLKRAAMFME-ANALEKKHWLAEKLFEVSLKDNLTFS 241 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L+ + E + + L + L I + + Sbjct: 242 KELLNEWNIQDME-------VLEEKRSHVKELFLLFLMYYRDILICKAGGEHFLLYYDDW 294 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + ++++ + + + K L Y + + +E + L Sbjct: 295 KDALIAKSKSMSEKTLFKILERIKTSLKYLDYNANINLLIENMITEILYLQSDP 348 >UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=Q3A3X2_PELCD Length = 321 Score = 222 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 139/342 (40%), Gaps = 26/342 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ V+G + L +S R+ HAYLF G G+GK +A L K L C G CG Sbjct: 2 FSRVLGHQRQKDLLEKAVSSKRLPHAYLFEGPEGIGKRLVALALTKILFCANG---NSCG 58 Query: 75 VCDNCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C +++ DL + S K+E R L + Y P +KV +ID ++ Sbjct: 59 DCPACHKVDHHNHPDLHQLGPDGSSIKIEQIRALQKELSYRPLEAPYKVSIIDGAEKMNP 118 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEP +L T P + TI SRC + + R +L+ +L Sbjct: 119 AAANALLKTLEEPRSQTLLILLTPAPDAVLPTIRSRCQRLPFSRIP----RERLQEVLV- 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E + E +LA +EGS + AL + ++ + Sbjct: 174 EQLNIEDAQAHILATLSEGSFKKALGKDRELYLQRRKELLKN-----------------L 216 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 A+ + ++ L + A +L + + ++Q + + Sbjct: 217 TALSSGSIIPLLNLAQKFAEEKDLLFDILEIIQAFYRDLLLLQHGRPMDDLVNVDMLETL 276 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + ++R + + L+ R+ L +R++ +E+ LLR Sbjct: 277 QSVSRRENVSSLLGKLDALMTSRRHLERNVNRQLAMEVLLLR 318 >UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC81_9FIRM Length = 330 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 144/348 (41%), Gaps = 25/348 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD++GQE + L N L ++ HAY+ SG G GK +A A+ L CE A Sbjct: 1 MRFADIIGQEELKGHLQNALQNQKVSHAYIISGEEGSGKRMLAEAFAQTLLCEEK-GADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR+ D+I + V+D R + ++ P +KVY++DE Sbjct: 60 CGHCHHCRQTMSHNQPDIIYLTHEKPATISVDDIRSQINSDIVIRPYNSDYKVYIVDEAE 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + NALLKT+EEPP + LL TT+ Q TI SRC+ K + +R +L Sbjct: 120 KMNEQAQNALLKTIEEPPSYAVILLLTTNAQAFLPTIRSRCILLETKPVPDALVRGELMK 179 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + A+G++ A++L + + Sbjct: 180 -----RYEIPDYQADMSVAFAQGNMGKAIALAQSQEFADRK----------------EMV 218 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E +A I E A+ L ++ + + + + A A Sbjct: 219 LSLIRHISEMTYADRIAWIREMEAKKEPLTDYLDLLMVFYRDVLLYKATGQADRLIFADQ 278 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +++ LA + ++ ++ + R++ + + ++ + R Sbjct: 279 VYQVKRLADGLSYRHLEEIFEGVESCRRKDAANVNTDLILQQLMERMR 326 >UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YD97_DICT6 Length = 326 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 132/335 (39%), Gaps = 28/335 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ+ + L ++ ++ YLF G GVGK A + LNC+ Sbjct: 1 MAFKEIVGQKQAIEVLRRAINENKLSQTYLFVGPEGVGKRLTAISFVQALNCKVEP-LEG 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG CD C+ IE+ + DL + + K++ RD+ P +KV+++D+ H L Sbjct: 60 CGECDICKSIEKLSYPDLFYLKPEGQWYKIQQIRDIRKEAYVKPYISNWKVFILDDAHQL 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 NALLK LEEPPEH F+L P+ L TI+SR L +++ ++ Sbjct: 120 RAEGANALLKILEEPPEHTLFILIAYRPELLLPTIISRSQIISFSYLSYDEVWQIIKD-- 177 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L++L ++GS+ AL ++ + + Sbjct: 178 -----KVSEDKLEILVNLSQGSVGKALFWGEENNWTKRIE-----------------LFK 215 Query: 252 LVEAMVEANGERVMALINEAAARGIEWE--ALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 + + + L++ + + LL +L + + +L+ Sbjct: 216 YLTLLKKDRPYSPFELVDFLVEEKDDEKIINLLELVLFWWRDLLLWKLTEDEKYIMQKDF 275 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + A+ +D++ +++ + + + Sbjct: 276 LPEIARKAQEYSVSDLRNFFRLTQDAIRGIRNNAN 310 >UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=Geobacter RepID=A5G697_GEOUR Length = 320 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 29/344 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ ++ L L+ GR+ HAYLF GT GVGK + A L + + C Sbjct: 1 MPFSHILGQNSAISILQRSLATGRLAHAYLFEGTEGVGKKATALALIEAVFCGK---EEG 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR+I + DL ++ K++ RDL ++ Y P K +ID Sbjct: 58 CGACPSCRKIAALQHPDLHLVEPDGAFIKIDQIRDLQKDLAYRPFEAPKKACIIDGAERF 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ + NALLKTLEEPP + +L T + TILSRC + H + L E I L Sbjct: 118 NQAAGNALLKTLEEPPGNALIILVTAQSSGVLPTILSRCQRLHFQTLPEETIAAYLGRN- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + A ++ A A GS++ AL ++ + S Q + ++G + Sbjct: 177 -----GIDGEAARIAASLAGGSMKKALEISKETTLSDRK----QFLERLIGLSLRE---- 223 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + E AA + LL + L I +++ G A + Sbjct: 224 ---------ITPLFSAAEELAADKDKVMELLELLTSFLRDILLLKGGGE--GIVNADLLP 272 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A + T I + R L + R+ +E+ +R Sbjct: 273 ILEREAGRLSQTGIMERIGHVAAARHALLRNVNARLTLEVLFMR 316 >UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUA9_SYNAS Length = 329 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 24/344 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D++G + L N + R+ HAYLF G GVGK ++A AK LNC G + Sbjct: 6 MSFKDILGHAKPIGILQNAIQHNRMAHAYLFHGMAGVGKLTLALNFAKALNCLQG-ASDA 64 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +C + + D+ I+A + +++ +DL + +++ P G+ +V ++ + L Sbjct: 65 CDCCISCIKTDHRNHPDIEMIEAEGQYIRIDAVKDLQERMKFKPMEGKKRVAILVDADRL 124 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP +L T P +LP+TILSRC Q L E + L Sbjct: 125 NNAAANALLKTLEEPSPANILILVTDRPYQLPITILSRCQQIRFNPLAQEIVTTLL---- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + E LLA A+ GS+ AL L +A + +V ++ + G D Sbjct: 181 -HERFSVENTQAGLLAAASGGSIGKALDLNREAYLTLKNEV----LNFIAGISADSSLHR 235 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L + + + L + + +++ + A G Sbjct: 236 LT-------------FLRFLSDDKRDIMDKLDILRTFFRDVLILRETGRAEGLMHQDRVD 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ A DI + + + L ++ + +E+ + + Sbjct: 283 QITAFAGKRTTGDILTAIRAIDSAERRLIQNTNKSLTLEVMMFK 326 >UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD26_9BACT Length = 297 Score = 215 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 10/306 (3%) Query: 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G +D++EID AS VE R L ++ QYAP++G++KVY+IDEVHMLS +FNALLK Sbjct: 1 MNGTCMDVLEIDGASNNGVEQVRALREDAQYAPSQGKYKVYIIDEVHMLSTGAFNALLKI 60 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPEHVKF+ ATT+ K+ TI+SRC +F LK + + IR +L+ I E I + A Sbjct: 61 LEEPPEHVKFVFATTEAHKVLPTIVSRCQRFDLKPIPEDLIRERLDLICKTEGIEADEAA 120 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ +AR A+G +RD+ S+ DQ IA +++ V + G + + L A+ + Sbjct: 121 LKAVARLADGGMRDSQSILDQMIAFCGTKITEPDVLQVYGLVSGEHIDELARAIATGDHP 180 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 ++ L ++ A G ++ LV++ + + + + + + Sbjct: 181 HLLELSDQFDASGQDFYRALVDLQSRVRQALLEAVRGGGKTKSLGEE----------LST 230 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTA 382 + +L L + ++ E+ LL+A + + A P Sbjct: 231 ESLTRLLDSLRQSESGLKFGLSEKVNFEVALLKASEECRARAIDGLIRELSTIAENLPET 290 Query: 383 VMTPTQ 388 Sbjct: 291 ADEKKN 296 >UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=Clostridium RepID=B8I4J3_CLOCE Length = 322 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 129/345 (37%), Gaps = 25/345 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G + +++AL + + HAY+F G GVGK + A A L C PCG C Sbjct: 1 MLGHQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASMLMC--REDQFPCGECK 58 Query: 78 NCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +C+ + D EI + VE+ R++L + P +KV +I++ ++ + Sbjct: 59 SCQLYREASNPDFQEIIQKDKSISVEEIRNILKGLVIRPLYSDYKVIIINDADTMTIQAQ 118 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK+LEEPP +V F+L + TI SRC + L E I +E Sbjct: 119 NALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRILFNRLSHEDIMEIMES-----KY 173 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + A+G AL L + + ++ L + Sbjct: 174 GPRQSDWEFIVSYADGVAGTALELAESPHSLELR----------------EEVLEFTSRL 217 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 V + +L +L + + + + + + + Sbjct: 218 VSDRDADPFKFYETFEKNNDRVDYILHVILLYFRDLLIYKETGDTSLLINSDKKDMIIRN 277 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + I Q + R+ L + ++ +E+ L++ Sbjct: 278 VE-LSFSHIIKCIQAVWDARRGLGNNANFQLAIEVMLMKIQKADN 321 >UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBQ2_BLASB Length = 501 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 171/379 (45%), Gaps = 17/379 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 VLA K++P + +++GQE++ L + R+ F G +GVGK + A +LA LN Sbjct: 9 IVLADKYKPLKWDELIGQENISITLKKAIQENRLSQVLFFFGPKGVGKNTCAHILANELN 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 + + ++ EI+ ++ ++D +Y+P RG++ ++ Sbjct: 69 SFSE---------------FKDISLNTFEINGFFHNSLKCIHRIIDTSRYSPKRGKYNIF 113 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +I E+H S+ F+ LK +EE H+ F+ T+ + +P ILSRC + ++L V++I Sbjct: 114 IIKEIHKFSKDVFDFFLKFIEEKHPHILFIFCGTEEKIVPEFILSRCQVYEFQSLSVKKI 173 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ I +E+I E AL LL++ EGSL A+ L D+ I+ ++S + LG Sbjct: 174 FFHLKMIAEKENIEIENEALLLLSKHVEGSLSKAIHLFDRFISCDGQKISKYFIMNKLGI 233 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-AL 302 D +V+ +++ N +++ L+++ + I+ L+V + + + S ++ Sbjct: 234 FDVKYYFEIVDYLLDENVNKILILLDKILQKKIDSYNLVVGFTKHFRNLFLSKNSETISI 293 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRALAFHP 361 I E ++ I + L KE + R+ VE+ L++ F Sbjct: 294 LKFKKEIIQSYIEQSKKISFFFLIHALSIFLRLEKEYRLNNQNLRLTVEIHLIQLAHFFS 353 Query: 362 RMPLPEPEVPRQSFAPVAP 380 + + Sbjct: 354 IHKKNHKNSSIEKNSQEFH 372 >UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G973_9FIRM Length = 349 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 80/364 (21%), Positives = 149/364 (40%), Gaps = 43/364 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--------- 65 F D+VG E ++ L N +++ ++ HAY+ +G GK IA A+ L CE Sbjct: 4 FKDIVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFAQTLQCEAVNKKLEEL 63 Query: 66 ----------TGITATPCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQ 112 TA PC C +C++ D+I + V+D R L +++ Sbjct: 64 AGETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHEKPNTISVDDIRTQLNNDIV 123 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 P + K+Y++DE +++ + NALLKT+EEPP + LL TT+ + TILSRC+ Sbjct: 124 IKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTTNAESFLPTILSRCVT 183 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 +LKA+ E+I+ L H + A+G++ A+ L Sbjct: 184 LNLKAVPDEKIKKFLMA-----HYQIPDYQADVCVAFAQGNVGKAIQLA----------- 227 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 ++ + + AL L++ + + + + + + + ++ M+ + Sbjct: 228 ASDDFNEL-----KASALQLIKRLHDIDLYEMTEAVKQISEYKLQINDYFDLMMIWYRDV 282 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + G ++ A I+ Q L + L + + +E+ Sbjct: 283 LYYKATKDVNGLIFKDEVYDIKRQAEQSSYNGIEEILQALSKAQVRLNANVNFDLVIELL 342 Query: 353 LLRA 356 LL Sbjct: 343 LLTI 346 >UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK6_SYNFM Length = 335 Score = 212 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 140/345 (40%), Gaps = 25/345 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D+ GQE L G + HA LFSG GVGK +AR LAK +NC Sbjct: 1 MSFKDIPGQERTKRLLKRMARAGTLPHAVLFSGMAGVGKLRVARELAKLVNCLEPRDDES 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+I++G DL I + K++ R+L + V++ P GRF+V +I+ L Sbjct: 61 CDRCISCRKIDEGHHPDLFVIRSEGTFIKLDRIRELRERVRFRPFEGRFRVVIIENAQHL 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 S NALLK LEEPP FLL +PQ L TI+SRC L+ L+ E I +L L Sbjct: 121 HDESGNALLKVLEEPPRANLFLLTAIEPQMLLPTIVSRCSHLRLQPLEDEVIAGELAASL 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + L R + GSL A L + S ++ Sbjct: 181 K-----IPEAQARELTRLSGGSLDRAQWLAREEHLSHWKEIVEN---------------- 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + V+A+ A + + E L + + + + ++ Sbjct: 220 -LRKSERSGTADVLAMAGRWAQQKEDLEQDLECVKLWVRDLLLSRVIDGYRQAFEPDDPC 278 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + P + Y + L ++++ +E L Sbjct: 279 AVCG--GEVSPDSLLTLYDRVEESIGRLRGNANKQLVMESICLNI 321 >UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3R5_9FIRM Length = 346 Score = 211 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 70/357 (19%), Positives = 145/357 (40%), Gaps = 37/357 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT------ 69 ++GQ H+L N + +G+I HAY+ +G G GK ++A AK L CE + Sbjct: 4 ERILGQNHILRHFENAIRMGKISHAYIINGEEGSGKMNLAIHFAKALQCERNNSNKAINE 63 Query: 70 --------ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTR-DLLDNVQYAPARGR 119 T CG C +C++ + D+ I V++ R + D++ P Sbjct: 64 DGERITVPGTACGQCKSCKQTDSKNQPDIKYITYEKSGIGVDEIREQINDDIDIKPYSSP 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y++ E ++ + NALLKT+EEPPE+ +L TT+ TILSRC+ +++ + Sbjct: 124 YKIYIVPESEKMTVQAQNALLKTIEEPPEYAIIILLTTNADTFLQTILSRCVMLNIRPVK 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I++QL ++ A + G+ A+ L +++ Sbjct: 184 EDIIKNQLTS-----QYGVGDYEARVAATFSNGNPGKAIKLA-----------TSEEFKE 227 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + + + ++ + + + I + + + M I + + + Sbjct: 228 L-----KQYVVGMFMSLEKGGMDIIGEAIKKTGTFKKQIDEYFSLMRIWFRDILVYKATK 282 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + ++++T DI + + + + + +E+ LL Sbjct: 283 EEDQIIFQDEYMTIEKMSQTYSFDDINDILKAIDLAESRIKSNVNFDSTIEILLLSI 339 >UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PER6_CLOTS Length = 320 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 139/341 (40%), Gaps = 26/341 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G +++L +S +I +AYLF G G GK +A+ A +NC+ G + PC C Sbjct: 4 IYGHKNILALFNKIVSSQKIANAYLFIGESGFGKEFMAKYFAMMINCKNG--SKPCLSCP 61 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +C ++ G D+ I+ KVE R++ ++N P K+++I E ++ + Sbjct: 62 SCIQMISGNHPDIFFIEPDGISIKVETLRNVVINNAYVKPYNSYKKIFIIKEAEKMTEQA 121 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N++LKTLEEPPE+ F+L ++ + L TI+SRC E I L I + Sbjct: 122 QNSILKTLEEPPEYGLFILTSSKMEGLLPTIVSRCEIIRFTRESDEVIEDYL--INEK-- 177 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + + +A A G+ A L D+ + + + LG + + Sbjct: 178 -KIDRSKAKKIASIANGNYGKANLLIDEGYS---------RIRSELGDILYNVI------ 221 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + ++ M L + +++L + + ++++ Sbjct: 222 --NQDKALRLESFKFFDENREMIDDIIDIMFSYLRDLMILKLLGSEEYIINKDMVDKLKD 279 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + + L + ++ +E LL Sbjct: 280 FSDNLTGFKLNNIINEIGELAFNLKSNVNYQLAIEKFLLNI 320 >UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNC0_9FIRM Length = 334 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 143/353 (40%), Gaps = 32/353 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + + G E AL L GR+ HA LF+G G+GK + R+LA + C+ PC Sbjct: 4 RWDTISGHEKQKEALRTMLREGRLPHALLFTGPDGIGKRMVGRVLAAAILCDA--EDGPC 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 G C++CR ++ G D +E+ ++E R + V P + + LID+ Sbjct: 62 GHCESCRAMQLGSHPDYLEVVPEQNGKSAAQIRIEAIRSMQTQVSRYPVLAKRRTVLIDD 121 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V F+L T+ L TILSRC+ L +++R L Sbjct: 122 ADRMNEAAQNSLLKTLEEPEGPVTFILVTSARSALLDTILSRCMPVAFGMLSPQEMRSVL 181 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 LA ++GSL AL L + G D Sbjct: 182 LQ------HDVPEAEAAELAALSDGSLGRALLLHEHE-----------------GLHLRD 218 Query: 248 QALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 +AL + + + ERV +L + A + + LL + ++ + Sbjct: 219 EALDFLAQLPSFDMERVWSLAADMGARDRESLREYFLYLNMLLRDLLVLAEDGGSPLLYH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I ++ L T P + + ++ L + R+ +E L+RA Sbjct: 279 GDIRAKLLALLPTYPEGRVFALLAEVREVQRRLQANVNLRLLMEGFLIRARDC 331 >UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET70_9FIRM Length = 340 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 67/356 (18%), Positives = 132/356 (37%), Gaps = 33/356 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---AT 71 +++G E + + +I HAY+ G +G GK +A +K L CE T Sbjct: 4 LNEILGNERIKEHFITAVHHKKISHAYIMEGDKGSGKKMLAEAFSKILQCEGRETTGLVE 63 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQYAPARGRFKVYLIDEV 128 CG C++C ++E D+I + V + R +++ V+ P +G +K+Y++DE Sbjct: 64 SCGKCESCIQMEYHDHPDVIWVSHEKPNVISVGEIREQIVNTVEIMPYKGPYKIYIVDEA 123 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + NA+LKT+EEPPE+ L TT+ TILSRC+ + + + L Sbjct: 124 EKMNAAAQNAILKTIEEPPEYAVIFLLTTNRGAFLDTILSRCILLATRPVPGTAVEKYLV 183 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E + + A + G++ A ++ +++ Sbjct: 184 -----EKCSVSKEEAEFAAGFSLGNIGKAEAIISSEEFQDLKELTL-------------- 224 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV------QLSPAAL 302 S++ + E + + E E L I ++ A Sbjct: 225 --SILRYIHEIESYEIADKVKEYKKYKNRIEDFFDIFLMWFRDIMLLKADNSVNAEAAKK 282 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +++ + I + R + + +E+ ++ A Sbjct: 283 KIIFKNEYAYLKKQVDKLDLEAIDYVIGKIHRARVRIKSNVNFDATLELLIVEARR 338 >UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0463 Length = 323 Score = 205 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 141/342 (41%), Gaps = 27/342 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 D++G + + + + +I H+Y+F G +GVGK S+A +AK L CE I CG C Sbjct: 2 DIIGHQKIKDYFKKVIKINKISHSYIFEGNKGVGKKSLAAEIAKILLCEDAIDEIACGKC 61 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ ++ D I+I+ ++ K+E + LL V P +G++K+++I E L Sbjct: 62 SACKMMDAKVHPDFIQIEKDTKITKIETIKEKLLKEVSIKPYKGKYKIFVIAEAETLRSV 121 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 NA+LKT+EEPP + L TT+ + L TI SRC+ L +++ + Sbjct: 122 GQNAILKTIEEPPTYALIFLVTTNIEMLLPTIRSRCIHISFSGLSETELKDYCKKYSINN 181 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + H + AEGS+ + + + +A+ + Sbjct: 182 KLIH--------LKFAEGSIGK-----------LKDNIYDEKFLDL-----RAEAMDYIL 217 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++ N + +++ +L + + + A + ++ Sbjct: 218 SICSCNVLSLYKVVSVLRENKEFVLKILEFWKLFFRDMLLYKRI-QATDLYFSDYINDIK 276 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 LA + ++I + + + ++ + + +E LL Sbjct: 277 RLAAIMQYSEISENIKNIDVASNDIQNNINAVLVIENLLLSF 318 >UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Euryarchaeota RepID=RFCS_METVS Length = 315 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 25/335 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + K+RP+ +VVG + ++ L N + + H LFSG+ GVGKT+ A LAK L Sbjct: 2 QKPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPH-LLFSGSPGVGKTTAALCLAKDL 60 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR-GRF 120 T + +E++++ ++ R + D + P F Sbjct: 61 YGNTWKE-------------------NFLELNSSDERGIDVIRTKVKDFARTKPIGDAPF 101 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +DE L+ + NAL +T+E+ + +F+L+ P K+ I SRC F L Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L+ I +E I E + + +EG +R A+++ Q A+ ++ + + Sbjct: 162 EDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVL-QTGAAVSKNINETVIYKV 220 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSP 299 D+ + E + + + G+ E +++++ + + + + Sbjct: 221 ASKARPDEIKKMTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEK 280 Query: 300 AALGNDMAAIELRMRELA-RTIPPTDIQLYYQTLL 333 L + + R+ E A I + + L Sbjct: 281 VHLVEAIGECDFRIVEGANERIQLSALLAKMGILE 315 >UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67JB2_SYMTH Length = 332 Score = 204 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 134/337 (39%), Gaps = 24/337 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T++ + GQ + L ++ GR+ HAYLF+G GVGK +A LA+ LNC Sbjct: 1 MTWSAIRGQRMAVDLLRRAVAGGRVAHAYLFAGPAGVGKRLVALELARSLNCLEPRAGEA 60 Query: 73 CGVCDNCREIEQG--RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C ++ D+ ++ R + E R + + V P GR+KV +ID Sbjct: 61 CGACRSCLKLSAEPPVHPDVTVVEPEGRMIRTEQMRQVQNEVYARPTEGRYKVVIIDGAE 120 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ S N LLK LEEPP + F+L TT+ + TI+SRC H L E I L Sbjct: 121 RMNAESGNRLLKVLEEPPPYACFVLLTTNAAGVLPTIVSRCQIVHFSPLPAEAIAAVL-- 178 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E P +L A + GS+ AL++ D+A Sbjct: 179 ---QEKAGIGPGEARLFASLSGGSVGAALAMAANPEVGRRR----------------DEA 219 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E + ++ E L L +V A Sbjct: 220 LSLLLRLGEMDDADLLEQAAAWEKEKDHLEERLEMAAFWLRDALLVAREAPERLVVNADR 279 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 +R LA + ++L R L + R Sbjct: 280 LPEVRTLAGRYGGEGLVAALESLSRARDALLRNGNAR 316 >UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bacillus thuringiensis RepID=Q3F084_BACTI Length = 431 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 158/335 (47%), Gaps = 12/335 (3%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 R++RP++ + G E + A+ + L+ A L GT G GKTS+AR++AK CE Sbjct: 15 TRRYRPKSMDEYKGNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYLCED 74 Query: 67 GITAT-PCGVCDNCRE----IEQGRF---VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 CG C +C+ IE G + L EI+A+ + + LL+ QY G Sbjct: 75 RDEEKGACGECYSCKMMDDYIETGNTDGLMGLREINASKDSGLTAINSLLEEAQYPNPDG 134 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF-HLKA 177 +K+Y++DE H +S + N+LLK +EEPPE+V F+ TTDP K+ T+L+RC +K Sbjct: 135 SWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTTDPDKMLDTLLNRCNIKLDVKK 194 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 EQ+ L I +E I+++ + L L+ +E +R AL + I + + V Sbjct: 195 PSEEQLTQILLDICVKEGISYDRKGLSLIVDRSELVIRQALMDLENVIVQTESA-EHRFV 253 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 S + + A+++ + + +++I++ + + + + R + Sbjct: 254 SKIFDKHPNSLYFDFYRALLKHDTHQFVSIIHKV-KTKMTVQEFVKNLTNFTKR-GIYIW 311 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + L M+EL + ++ + + L Sbjct: 312 NGVNLEGITENELKNMKELFKQFKLEELAMMIEFL 346 >UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBV2_THET1 Length = 345 Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 144/350 (41%), Gaps = 25/350 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ VG + L L+ + R ++LF+G VGK+++AR A L C + PCG Sbjct: 7 SEFVGNKQALRLLSAAKAKNRASGSWLFTGPPSVGKSTLARWFAALLLCSDETSDYPCGQ 66 Query: 76 CDNCREIEQGRFVDLIEID----------AASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 C +CR+I G D+ I + ++ R++++ + P KVYLI Sbjct: 67 CIHCRKIYHGSHPDVETISLALQAEQSGKPSREIGIDSIRNIIERIYLRPFEANRKVYLI 126 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ ++ + NA LKTLEEPP+ V +L D LP TI SRC + +L+ + +I Sbjct: 127 EDASTMTEEAANAFLKTLEEPPDFVTIVLIAIDDYSLPETIRSRCYRVNLQPVPHSEITR 186 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + E ++A + G A+ T + ++ +L + D Sbjct: 187 YLVN-----SLGFEQEEANMIATLSNGRPGWAIRATHDRALVAQVNDDWKYLNKILQSND 241 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++ + E + + + +LL +G++ +A ++ Sbjct: 242 IERL---------KSAEEISKDWSNKPNNRDDLYSLLFNWIGIIR-LATIKSFQENGSKA 291 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + + ++ P Q +L L + R+ +E L+ Sbjct: 292 YLSENVDLIRFLSSLGPQHGYELIQQILKAIYMLDSNANVRLVLENLFLK 341 >UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=B3E2K6_GEOLS Length = 331 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 136/355 (38%), Gaps = 28/355 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT 71 + + + GQ+ VL AL ++ R+ HAYLF G G G+ + A L + L C+ Sbjct: 1 MSLSVIKGQDRVLDALKRSIAANRVAHAYLFEGPDGCGRRTTALALMQALFCKEPLDGGD 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C +CR++ G DL + +E R+L + P + K LI+ Sbjct: 61 ACGNCSSCRKLASGNHPDLHLLSPLPDKRDISIEQIRELQQQLSLRPFEAKRKACLIEPA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ S NALLKTLEEPP H +L +T L TI SRC LD + L Sbjct: 121 ERMNEKSANALLKTLEEPPGHAIIVLLSTQADLLLSTIRSRCQHLRFSPLDDGVVADLLI 180 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +P + LA AEGS+ A +L +++ A ++ V + + Sbjct: 181 QQ------GMDPDKARELAPLAEGSMERASTLEEESDAVRRQELL--TVLSKASSRQVAT 232 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 E++ E ++ N + + + S +G Sbjct: 233 IFDAAESV-AGGREETLSTFNLLLSLLRDLLLI---------------RSCGQIGIANGF 276 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + A P + + L R+ + + ++ +E LL + Sbjct: 277 LNNELTVEASRFTPAGMMEALERCLETRRAIQGNANPKLALERFLLAYDRLRKGV 331 >UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Tax=Plasmodium RepID=B3L0H3_PLAKH Length = 330 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 125/333 (37%), Gaps = 33/333 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M K+RP+ D+V Q + ++ L + + H +F G G GKTS LA Sbjct: 1 MDNLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPH-LIFHGPPGTGKTSAINALAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR- 119 L I+ ++E++A+ + R+ + Sbjct: 60 ELFGRDNISER------------------VLELNASDDRGINVVREKIKAYTRISISKNK 101 Query: 120 -----------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E +F+L K+ I S Sbjct: 102 INSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYS 161 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC + + + ++ + +L +I E I AL + +G LR A+S+ Q + Sbjct: 162 RCSCYRFQGIPIDVKKEKLLYICKSEGINILDDALDKIIETTQGDLRRAVSIL-QLCSCI 220 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 D ++ ++V + G DD +++A + + V + + G + + + Sbjct: 221 DPMITLESVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNY 280 Query: 289 L-HRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + +++ + R+ A Sbjct: 281 FVMNTEYQDSVKSQILLELSRHDYRLHSGATKY 313 >UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=Clostridia RepID=A4XHH7_CALS8 Length = 320 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 137/346 (39%), Gaps = 33/346 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 VGQ+ ++ AL L HAY+F G +G GK +AR+ +K + CE + Sbjct: 1 MNLDTFVGQKEIVFALKKALKN--PFHAYIFEGEKGFGKKLLARVFSKHILCENKSS--- 55 Query: 73 CGVCDNCREIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CGVC +CR E D + VE R+++ ++ P KV++I+E Sbjct: 56 CGVCKSCRLFEASSHPDFHIIKRQEDKKEISVESIREIIKDLSRGPIFSDKKVFIIEEGE 115 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 LS + NALLKTLEEPP + F++ + ++L T+LSR + K +I L Sbjct: 116 ELSISAQNALLKTLEEPPTYALFIITCNNIERLLPTVLSRSIVLSFKRYSASEIAKIL-- 173 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E EP+ + + +G+ + AL ++ + + + + + D + Sbjct: 174 ----EQNGLEPK--DYIVKLCKGNPKIALDFYNKEVQNKRDYIFDKLLCY------DGAS 221 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L++ + ++E L ++ L + + + Sbjct: 222 FDLIKEFES-----------DFEKLKNDFEFLFKNIIYFLRDALFYKKTKSIELITNTDK 270 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ E + + I Q +I K ++M L+ Sbjct: 271 LEKIIEFSNKHTISHIYKLLQDFMILEKYPDANVISDNVLDMIFLK 316 >UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=A8W216_9BACI Length = 330 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 132/338 (39%), Gaps = 22/338 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L + R+ HAYLF G+RG GK IA+L+AK C+ +A PCG C +CR Sbjct: 12 QPVAAGILKRTIEKNRLAHAYLFEGSRGTGKQEIAKLVAKAFLCQVRESADPCGDCGDCR 71 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++ G D+ I+ KVE R L KVYL+ + +++ + N+L Sbjct: 72 RVDSGNHPDVHLIEPDGTTIKVEQIRGLKKEFSMRGMESGRKVYLVQDADLMTASAGNSL 131 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L TT PQ++ TILSR L ++ L + +E Sbjct: 132 LKFLEEPDGEALAILMTTRPQRILKTILSRVQVLSFHPLAPDEFVKTLVNHDVKE----- 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL L +L +ALS+T++ + Q + ++ Sbjct: 187 RDAL--LLSRMTSNLDEALSMTEEDWIAEARNKVIQLIDDLVTRPGYSLIS--------- 235 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + + + + M + E R+++ A + Sbjct: 236 ----LQDDWIPFFKEKTDVQLGIDLMTLWYRDVLR-TKVDQMEQIVYVDQEDRLQKQAFS 290 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + ++ ++ + ++ +E L+R Sbjct: 291 LSEERLARHLEAIVDTKRRIDANTTPQLAMEQMLIRLQ 328 >UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Thermoprotei RepID=RFCS1_PYRIL Length = 329 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 69/348 (19%), Positives = 146/348 (41%), Gaps = 26/348 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ K+RP++F +VV E V + L + G + H LF G G GKT++A +LA+ Sbjct: 1 MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPH-LLFYGPPGTGKTTMALVLAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPA-RG 118 L E + +E++A+ + R + + + AP + Sbjct: 60 ELYGEYWRE-------------------NTLELNASDERGINVIRERVKEFARTAPVGKA 100 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE ++ + AL + +E ++ +F+L ++ I+SRC F + Sbjct: 101 PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM 160 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + +L++I E + + A+ L+ +EG +R A+++ Q A+ + V V+ Sbjct: 161 PRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINIL-QVAAATNKIVDRNVVA 219 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQL 297 A + + L + + + + E +G+ + L R+++ Sbjct: 220 AAAAAIRPTDIVELFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDE 279 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + A + +A ++ R+ + A + + L K++ A Sbjct: 280 TKAEVAELLADVDYRLTQGADE--EIQLSYFLAKLGSIGKKIRAASLP 325 >UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PXY3_VIBCH Length = 479 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 164/482 (34%), Positives = 234/482 (48%), Gaps = 55/482 (11%) Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 +RDALSLTDQAIA G+G V + V+ MLGTLD D AL L++A+ + VM I A Sbjct: 1 MRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQ 60 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G+EW+ LL ++ LHRIAM Q PA L + R+ LA+T+ P D+QLYYQ L Sbjct: 61 NGVEWDGLLQQLSTQLHRIAMYQALPATLDKSLPEAS-RIESLAKTLAPQDVQLYYQIAL 119 Query: 334 IGRKELPYAPDRRMGVEMTLLRALAFHP-RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 GR++LP +P R+G+EM +LR +AF P + L VP + A T Sbjct: 120 KGRQDLPLSPTARIGIEMLMLRMMAFRPSHVSLASVIVPPNTAVTTPTIATPTSQMAVSA 179 Query: 393 PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRAR------------ 440 PQ P V P + + + + Q ++ Sbjct: 180 PQPQPVAQSNVSQPASQAMPYSVAPPMMAAQPVVESAVPVTQREASHSINAPEVSVVTNT 239 Query: 441 ---------------------------------------PVNNAALERLASVTDRVQARP 461 +ALER+A +VQ P Sbjct: 240 DTQSQASMPALAGLRHQLRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSP 299 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + ++ ++E Y+W+ P+ + TP LKKALEHEKTPE+ AKL EA+ +D Sbjct: 300 ERNDEDELEPEEEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMVAKLIEEAVAQD 359 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG 581 W+A V +L K+VEQ+ALN+ + + L LR S HL+N AQQ+L +AL+ + G Sbjct: 360 AWSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLG 419 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 L I TPLE R+ +Y++KL A S+ D N+Q + R F+A+LD +S+R Sbjct: 420 EACSLNITVGQEG--ETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVR 477 Query: 642 PI 643 PI Sbjct: 478 PI 479 >UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archaea RepID=RFCS_METST Length = 321 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 68/353 (19%), Positives = 135/353 (38%), Gaps = 43/353 (12%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RPQT DVVGQE ++ L + + + +F+G GVGKT+ A LAK L Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPN-IMFTGFAGVGKTTCALALAKSLLG 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVY 123 E + +E++A+ ++ R+ + + F++ Sbjct: 63 EYWQQ-------------------NFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRII 103 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +DEV +++ + AL + +E + F+L+ K+ I SRC F + I Sbjct: 104 FLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANI 163 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L++I +EE I E AL+ + +G +R ++++ QA + + V+ +AV ++ Sbjct: 164 IKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINIL-QASTTTENTVTEEAVYDVISR 222 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + + LL I +++ Sbjct: 223 AKPKDVRKIINKALNHDFMEAR---------------------DLLRDIMIIEGVSGDDL 261 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 E+ IP + + + + + R+ +E L + Sbjct: 262 ITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNPRLQLEALLSKF 314 >UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ60_DESPS Length = 338 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 132/347 (38%), Gaps = 24/347 (6%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + V+GQ+ +A + R+ HAYLF G GVGK AR +A LNC A CG Sbjct: 12 SQVLGQQRAKQIVARAIEADRVPHAYLFKGPDGVGKKLFARGVAAALNCRERQGAFACGH 71 Query: 76 CDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C +CR++ G D + K++ R L ++ + P +V ++++VH + R Sbjct: 72 CVSCRKLLSGNHPDYTVVQPDKGAIKIDQVRSLCRDLSFPPYESPVRVVVLEDVHTMRRE 131 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + N+LLKTLEEPP++ +L ++ TI SRC L ++ L+ +E Sbjct: 132 AANSLLKTLEEPPQNNVLILTAESSCEILTTISSRCQVVSFYPLTENEVSTALQ---GKE 188 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 LLAR AEGS L L+ A+ + + ++ Sbjct: 189 LPPLAENEQGLLARLAEGSPGKMLLLSTTAVLPVWKK-----AQKL-----------FID 232 Query: 255 AMVEANGE--RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 ++ + E + E A + + ++ + + Sbjct: 233 PALQGDAEIGAWLQCAEEIALLKEDMTYFFAILRLMIRDHLLNLSGVQESLCSLTDWGFS 292 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +L + + K++ Y + + E+ L Sbjct: 293 ENKL--RWSRPALLQALHYIDTAEKKMVYNCNNTLVCEVLLFALQRL 337 >UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=Rhodothermaceae RepID=D0MDY9_RHOM4 Length = 391 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 148/407 (36%), Gaps = 66/407 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++GQ+ V+ AL L+ R+ HAYLF G G GK + A + A+ L CE G + P Sbjct: 1 MTWDRIIGQKRVVEALRRALAQQRVAHAYLFYGPDGTGKRAAALMFAQALQCEQG-GSDP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDA-------------------ASRTKVEDTRD------- 106 CG C C ++++ D+ + V+ R Sbjct: 60 CGQCVPCTKVQRLIHPDVQVMLPHPSDADPDDLYERLQRLAAEPYATVDYIRRPVLDDPT 119 Query: 107 -----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 L +V + P GR+KV ++ + + + NA LK LEEP Sbjct: 120 RASNKQAFYSVARINESLRRSVSFKPLEGRYKVAILIDADRMRVEAANAFLKLLEEPGPQ 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 F+L T+ P L T+ SRC L E I L + E + + +LAR Sbjct: 180 TVFILTTSRPDHLLPTVRSRCQHLRFDPLPAEAIAQAL---VEREGV--DEARAMVLARM 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A+GS AL L + + D +QAL+ + + E ++ L+ Sbjct: 235 ADGSYSRALDLLENEVL----------------QADREQALAFLRQAYRFHSEALVDLVE 278 Query: 270 EAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + +A G E LL MLG + + + + + +R + +P D++ Sbjct: 279 QLSALGRERLKGLLQLMLGWVRDLVLFRTLGDGAELVNLDQQEAIRRFCQNLPEADLEGM 338 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSF 375 + L + + + + + Sbjct: 339 ARLLEEALELIERNVQPFLVLSVLAAALRDAMHGRAPERLVPALDDP 385 >UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A325_NATTJ Length = 320 Score = 199 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 136/345 (39%), Gaps = 44/345 (12%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP 72 +F +GQE ++ L L+ G HAY+F G G GK S+AR+ A GL CE+ + P Sbjct: 14 SFDKFIGQEKIVKNLLRQLTSGNTGHAYMFVGPEGQGKGSLARIFAAGLLCESVDENSGP 73 Query: 73 CGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C ++++ D + + K+E+ R + + Y P + K+YLI+ + Sbjct: 74 CGICYSCSKLKKSIHPDLVTIGSESKSIKIEEVRKVKQYINYRPTDSKKKIYLIESAENM 133 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +R N++LK LEEPPE+V FLL + +++ T++SRC L EQ+ L + Sbjct: 134 TREGANSILKMLEEPPEYVVFLLTVNELERMLPTVISRCQIHQFLPLTEEQLYKALSN-- 191 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L+L + G + L++ + + V + L Sbjct: 192 ---RTHASQEQLELAVSLSGGMIGRGLAILQDESYYDMIKKAHSFVEKFEKLTLPE-LLD 247 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 E + + E L + + + + Sbjct: 248 WAEKIDSMD----------------NCEEFLELLNIVFKQKLSENQTSD----------- 280 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + +L + +L +R + +E +++ Sbjct: 281 ---------SINKLARIMEIILETKGQLLTNVNRLLALEAMMVKI 316 >UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryota RepID=RFC5_HUMAN Length = 340 Score = 198 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 23/313 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RPQT D++ + +L+ + ++ R+ H L G G GKTS AK L Sbjct: 20 LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPH-LLLYGPPGTGKTSTILACAKQLY 78 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGR-FK 121 + + ++E++A+ ++ R +L + FK Sbjct: 79 KDKEFGS------------------MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK 120 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE +++ + NAL + +E+ E+ +F L K+ + SRC +F L E Sbjct: 121 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 180 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +LEH++ EE + ++ L + G +R AL++ Q+ G+V+ + V Sbjct: 181 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNIL-QSTNMAFGKVTEETVYTCT 239 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++++ M+ + I E +G+ +L E+ +HR+ Sbjct: 240 GHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRI 299 Query: 301 ALGNDMAAIELRM 313 L MA IE R+ Sbjct: 300 HLLTKMADIEYRL 312 >UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya RepID=RFC2_YEAST Length = 353 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 64/348 (18%), Positives = 134/348 (38%), Gaps = 47/348 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q K+RP+ +V Q+H +T L L + H LF G G GKTS L K Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKE 81 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----APAR 117 L + + ++E++A+ + R+ + N P++ Sbjct: 82 LYGPDLMKSR------------------ILELNASDERGISIVREKVKNFARLTVSKPSK 123 Query: 118 GR--------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 +K+ ++DE ++ + +AL +T+E +F L ++ + SR Sbjct: 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASR 183 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA----- 224 C +F KALD +L I +E++ + L+ + + G LR ++L A Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 +++ V + G + D + +VE + + + + +N G +++ + Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303 Query: 285 MLGLLH-----------RIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + +I+ + + + N+ +++ L I Sbjct: 304 LHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351 >UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCP0_9FIRM Length = 326 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 132/353 (37%), Gaps = 33/353 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L R A LF G G+GK +A A+ C T C Sbjct: 2 WDTILGHEANKIFLGNMLQGERKTPALLFYGPDGIGKKKLAYEFARSFLCLDDPTHDDC- 60 Query: 75 VCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +CR D I ++ +E +++ ++P +KV LID + Sbjct: 61 KCRSCRAFCGESHPDFIYVEGQGARHDILIEQIKEVEKKAVFSPVLSPYKVCLIDGADRM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP + F+L ++ ++ TI SR + + L E+ +E + Sbjct: 121 REEASNSLLKLLEEPPTYWLFILVASEISRILPTIRSRLMAIRFEPLHREKAVRVMEELS 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + LAR ++GS AL L + + A+ M G D S Sbjct: 181 VPQG--------ETLARLSDGSPGKALHLAEAEALMWRER----ALFIMEGIEDPYLMAS 228 Query: 252 L--VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L +E + + + ++ + L +L +L M+Q + L Sbjct: 229 LARLEWLGDMDVDQT--------------QTFLEMLLLILRDAMMIQE-GSGLLLYNEDE 273 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 R+ + + + ++ L + RM +E L F Sbjct: 274 RERIASIFASFTLSALKKSLLETERFYLGLNKGVNTRMILEALFLEIHTFLKE 326 >UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 Tax=cellular organisms RepID=B4AZI0_9CHRO Length = 843 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 104/522 (19%), Positives = 191/522 (36%), Gaps = 21/522 (4%) Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + + Sbjct: 284 VHNCHMLSVAAFNALLKTLEEPPNRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLLDMV 343 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 + L++I N+E+I + +A+ L+A+ A G LRDA ++ G V+ + V ++G + Sbjct: 344 NHLKYIANQENINIDDQAITLVAQIANGGLRDA-ESLLDQLSLLSGTVTPERVWELVGAI 402 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + L L++A+ N + ++ L RG E +L + G + + + +P+ Sbjct: 403 PEIDLLDLIKAIRTQNPDTILDLCRGLMNRGKEPLTVLQNLAGFYLNLVIAKTAPSRADL 462 Query: 305 --DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 A+ + E A+ +I Q L +L R+ +E+TLL L+ Sbjct: 463 VAVTASTWNALCEEAQQWRLEEILQGQQHLKDSEVQLKNTTQPRLWLEVTLLGLLSVGVT 522 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + Q P P S P PE + + Sbjct: 523 VAPSVEQKSVNGSNGNNGKGNYQEIQTPSIPPSRVTPPPPQTKPEVKPEPIQESPPPAPP 582 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + + + L L + + Sbjct: 583 REEPFTPEHNLQPLEDLEEIWKMVLTYLKVPSTYALFSQQGHLSSFDGSVAIVRISSPNL 642 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSLPKLVEQVAL 541 ++ + + A K+ + ++ ++ E+ + L K +E + Sbjct: 643 LILFKGKTAEIEDAFKEIYQKPIKVKIEVNTIDKSPEQPARFQTPPKPLESVKELEPLNP 702 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL- 600 +++EE + A + + +DN +P Sbjct: 703 TSFQEEKPAVNTNGKHPPIEPSSTPEAAPQ-----------PPSVE---NDNTGGESPAI 748 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A E+ Q ++ L + FD EL + I P Sbjct: 749 SNFSAASSEETQQVYSDKEIQKAVEQLIKAFDGELVD--IVP 788 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 127/708 (17%), Positives = 240/708 (33%), Gaps = 90/708 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQ+ + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFKDLVGQDAISVTLINAINTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T TPCG CD C+ I +G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLETDKPTPTPCGKCDVCKAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHS---FNALLKTLEEPPEHVKFLLATTDP--------------QK 161 R+KVY+IDE L+ S L L+ K +L+ D Q Sbjct: 121 RYKVYVIDEC--LTGDSLVLTREGLMRLDNANIQGKMVLSYHDKTGVWEYKKVLRWLDQG 178 Query: 162 LPVTIL----SRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRD 216 + T++ +R ++ L ++ ++ + P ++++ D Sbjct: 179 VKPTLVIKTTNRVIRCTENHLIRTD-EGWIQARNVKQGMKILSPVNVEMVNSLTNTRQMD 237 Query: 217 A-------------LSLTDQAIASGDGQVSTQAVSA---------------MLGTLDDDQ 248 L + V V ML + Sbjct: 238 VSVKNIQLPLWTTNLETVESIKKGQQENVYDIEVEDNHNFVANGLTVHNCHMLSVAAFNA 297 Query: 249 ALSLVEA--------MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA------- 293 L +E + + +RV+ I R L++M+ L IA Sbjct: 298 LLKTLEEPPNRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLLDMVNHLKYIANQENINI 357 Query: 294 ------MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL----LIGRKELPYAP 343 +V D ++ ++ L+ T+ P + + L+ + Sbjct: 358 DDQAITLVAQIANGGLRDAESLLDQLSLLSGTVTPERVWELVGAIPEIDLLDLIKAIRTQ 417 Query: 344 DRRMGVEMTLLRALAFHPRMPLPEPEVPR------QSFAPVAPTAVMTPTQVPPQPQSAP 397 + +++ + + + AP V Sbjct: 418 NPDTILDLCRGLMNRGKEPLTVLQNLAGFYLNLVIAKTAPSRADLVAVTASTWNALCEEA 477 Query: 398 QQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 QQ + + + + QL+ + ++E+ + Sbjct: 478 QQWRLEEILQGQQHLKDSEVQLKNTTQPRLWLEVTLLGLLSVGVTVAPSVEQKSVNGSNG 537 Query: 458 QARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + P+ + + + ++ A E+ L Sbjct: 538 NNGKGNYQEIQTPSIPPSRVTPPPPQTKPEVKPEPIQESPPPAPPREEPFTPEHNLQPLE 597 Query: 518 IERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLH-LRSSQRHLNNRGAQQKLAEAL 576 + W ++ L +P + D +V + + S + +G ++ +A Sbjct: 598 DLEEIWKMVLTYLKVPSTYALFSQQGHLSSFDGSVAIVRISSPNLLILFKGKTAEIEDAF 657 Query: 577 SMLKGSTVELTIVEDDNPAVRTPLEWRQ-AIYEEKLAQARESIIADNN 623 + +++ I + ++P + + + L +E + Sbjct: 658 KEIYQKPIKVKIEVN--TIDKSPEQPARFQTPPKPLESVKELEPLNPT 703 >UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=Piroplasmida RepID=A7ATE5_BABBO Length = 348 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 66/357 (18%), Positives = 138/357 (38%), Gaps = 39/357 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP++F+D++ + +L+ L N G++ H LF G G GKTS +++ L Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPH-LLFHGPPGTGKTSTIMAVSRYLY 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA------- 116 R ++E++A+ +E R+ + Sbjct: 66 GSH-------------------RHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIV 106 Query: 117 ------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 R K+ ++DE ++ + N+L + +E +V+F L ++ I SRC Sbjct: 107 GSDSGPRTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRC 166 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD----QAIA 226 F L + ++ + I E + AL LA +G +R L+ A Sbjct: 167 TGFRFPPLKNDVVKRRTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGA 226 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEM 285 + D +++ V + G + + L++ +++ + + + + +G E L+ + Sbjct: 227 TRDKVITSDVVISTAGLPNPTEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTAL 286 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELAR-TIPPTDIQLYYQTLLIGRKELPY 341 + RI + L + IE R+ A I + + + + + L + Sbjct: 287 YRSILRIDWPNVVIVQLLIRLGDIEQRLSAGASPYIQIASLVSAFAEVRLEIERLKF 343 >UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=Dehalococcoides RepID=A5FRS4_DEHSB Length = 343 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 143/349 (40%), Gaps = 32/349 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++GQ+ V++ L+N LS ++ HAY+F G GVGK +A A+ LNC+ PC C Sbjct: 4 IIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQALNCQASPP--PCQECS 61 Query: 78 NCREIEQGRFVDLIEIDAAS-----------RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 C I D+I ++ S V+ D+ P G++KV++I Sbjct: 62 VCGRILSRNHPDIIHLELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYKVFIIH 121 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + LS S N LLKTLEE F+L T D L T++SRC L+ +++ IR Sbjct: 122 QAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVEINLIREA 181 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L + +LL+ + G + A+ + + + + + + +LG D+ Sbjct: 182 LLKQ------GLDAEKAELLSHLSHGRVGWAMEVASSPEILEERKANIEKIIWILGQ-DE 234 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ + EA+L L + + +++ Sbjct: 235 EERFDYASDLSN-----------LFGQNRTAAEAILDMWLDVFRDMLLLKADANQNM-TN 282 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + + + TDI++ +L L + R+ +E+ +L Sbjct: 283 IDYKDILYMASDKLGLTDIRIAIDNILKTEDRLRANANPRLCLEVLMLS 331 >UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TB70_HELMI Length = 340 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 141/360 (39%), Gaps = 27/360 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + GQE + L+ GL R+ HAYLFSG +GVGK + AR A+ + C C C Sbjct: 7 QITGQERAIRQLSRGLLANRVAHAYLFSGPQGVGKKTAARAFAQSVLCLERAGGDACASC 66 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 CR+ + G DL + T K+E R+L ++Y P +V LI++ + S Sbjct: 67 PACRQFQGGSHPDLFSLSPEGTTLKIEQIRNLQKRIRYRPYLSSHQVVLIEQAETMQGPS 126 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLK LEEPP F+L T + TI SRCL + + + +I L+ + Sbjct: 127 ANALLKILEEPPGPTVFILITDRGHGILPTIRSRCLPVYFQPVPSGEIARFLKE----KG 182 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 ++ +L L A+G A L + + +G + + V L D + L E Sbjct: 183 VSAGHVSLLTL--LADGRWDRAARLAAEGLPAGRER--ARQVLDGLALTGDSRIFQLAEE 238 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + E + + + + A + + Sbjct: 239 -WDKDKEGIAEFFDYLTLLLRDRLLI-------------AGAGGAEVPVINGD----ITG 280 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSF 375 A P + T++ R+ L R+ VE TLL+ PL + + Sbjct: 281 GADRWPLPVLLTALDTVMAARRLLDTNASARLLVEDTLLKLRDLARGEPLTPLTAAKVNL 340 >UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD908 Length = 350 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 138/353 (39%), Gaps = 32/353 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ ++D+ G ++ L + R+ HA LF+G GVGK A +LA+ L C G A Sbjct: 21 PKDWSDIRGHAEIIRRLRFLAAAERLPHALLFTGAEGVGKRRTAHVLARTLLCAKGGDA- 79 Query: 72 PCGVCDNCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR +E G D E A+ + + R++L AP R ++ LI Sbjct: 80 PCGHCDSCRTMEAGVHPDYFEAVPEARGKGAAAIRTDAVREILVAASGAPISARRRIILI 139 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D+ ++ + N LLKTLEEP V F+L T+ + + TI SR ++ AL ++ Sbjct: 140 DDADRMNETAANRLLKTLEEPSGEVIFILVTSACEAILPTIRSRAVRIAFGALPRTELET 199 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + +A A+GSL A +L + ++ D + V A L L Sbjct: 200 ALAERGTDNG--------ETIAALADGSLGRAYALAAEGLSLRDDALR---VLAELPALS 248 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + E + E E A L + + ++ A Sbjct: 249 MEDIWRYAEKIGAYTHE--------------ERRAWLGYFQTAMRDLLLLLEDGTASQLF 294 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + L + I + + + E L+RA Sbjct: 295 HPDRRADLGVLLAHMLRPQIFALLDESRKLLRRFDANVNPALQAEAFLIRARQ 347 >UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UL15_METS4 Length = 699 Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 4/268 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ F D+VGQ+ + + ++ L G G GKT+IAR+L LNC Sbjct: 10 WDEKYRPRVFGDLVGQDGAVAWCKERVRERQV-KTLLLHGPSGCGKTTIARVLGNALNCR 68 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + +PC CD CRE + E AS+ +ED R L+ + +R K++ + Sbjct: 69 APVDGSPCLSCDICREFKPKNDTYYREHLCASQGGLEDARMLVRASSASGSRKYRKIFAL 128 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE H ++ +F+ALL LEEP F+L TTD + +P +L+R L+ ++ + E Sbjct: 129 DEAHRMTGAAFDALLSRLEEPNSTTVFMLLTTDLEAIPEAVLTRSLRIEIRPISDEDALT 188 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I E + E ALQLL GS R + ++ G ++ V L Sbjct: 189 YLNKICRHEGLEPEAAALQLLVETGRGSPRRLIRDLERVKDFGS--LTYDGVRRALDLDH 246 Query: 246 DDQALSLVE-AMVEANGERVMALINEAA 272 D + ++ A+ E+ + L+ Sbjct: 247 ADVVPAYLKVALTGGPLEQQLRLLEGWV 274 >UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ACX9_9CLOT Length = 311 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 130/346 (37%), Gaps = 40/346 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F + GQ L+N + I HAY+F G GVGK ++AR LA L Sbjct: 1 MYFEKIRGQRFAKKYLSNSIKSNMISHAYMFEGPSGVGKNTMARDLATTLLEME------ 54 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D IEI K+ R L ++ P + +K+Y+IDE + Sbjct: 55 ----------NLFNSPDYIEITPDGNSIKIAQIRKLQSDILVKPYKS-YKIYVIDEAQKM 103 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEPP++ +L T + + L TI SRC + + ++ L Sbjct: 104 TVEAQNALLKTLEEPPKYAIIILITNNKESLLDTIKSRCEIIKFTPIPLVEVADYLTQT- 162 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + LLA + GS++ A+ L++ + V Sbjct: 163 -----GVDKNRASLLANFSRGSMQKAIELSESEDF----HIMRDEVQ------------K 201 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 VE + + +M + + +L ++ I MV+ + + + Sbjct: 202 YVETFLTGSMLDIMDIQSSIEKYKDNITNVLDLLVNYFRDIMMVKENVDSSMIINLDRLV 261 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ ++ I + + + + +L + + +++ L Sbjct: 262 FIKNMSTKITYSQLSKIIDIIEETKNKLRSNCNFNISIQVMTLNIY 307 >UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 Tax=Clostridium RepID=C9XSF1_CLODC Length = 311 Score = 194 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 140/340 (41%), Gaps = 38/340 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F +++GQ+ L N + ++++AY+F G G+GK A L+K L + +P Sbjct: 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSP 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 ++ + K+ R+L ++ P + +K+Y+I+ ++ Sbjct: 61 D---------------YVLIKPDGNSIKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMT 104 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKTLEEPP + +L T + + L TI SRC + +E ++ L Sbjct: 105 VEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLI---- 160 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + E QLLA + GS+ +AL+L+ + S + + Sbjct: 161 --NTGIEEERAQLLAIFSRGSIENALNLSQSSEFS----------------MMREDIQQY 202 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 ++ M++ N ++ + N + ALL M+ I +++ + + Sbjct: 203 IQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDKLVF 262 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 ++ ++ I + + + + ++ + + +++ Sbjct: 263 IQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVM 302 >UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas vaginalis RepID=A2DS36_TRIVA Length = 325 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 128/346 (36%), Gaps = 30/346 (8%) Query: 1 MSYQ---VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ Q K+RP DVV E ++ + + + H F G G GKT+ A Sbjct: 1 MTAQNVLPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPH-LCFHGPPGTGKTTTAIA 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPA 116 ++ L + ++E++A+ ++ R + D Sbjct: 60 ISHQLYGND-------------------TSMSVLELNASDERGIDTVRMRIKDFASSRSL 100 Query: 117 RGRF-KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G K+ ++DE ++ + AL + +E+ +V+F+L P+KL + SRC +F Sbjct: 101 FGPKIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRF 160 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L E L HI + E + + L+ L + G LR +++L S ++ Sbjct: 161 QPLPDEDAAKFLRHIADAEKLNMDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEA 220 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALIN-EAAARGIEWEALLVEMLGLLHRIAM 294 V G + +E ++ + + +N + G+ ++ E+ + + Sbjct: 221 NVYRCSGYPLPEDMARTLEQLINKPLDEALNTLNDQVFNNGLSLLDVIRELHSQV----V 276 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 + P + ++ ++ P +Q + Sbjct: 277 LMEFPPLVLANLIERLAQIERCLAEGSPERVQSAAIAAAFQMLRME 322 >UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanobacillus iheyensis RepID=Q8EU50_OCEIH Length = 329 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 135/341 (39%), Gaps = 22/341 (6%) Query: 14 TFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++ Q + N ++ GR+ HAYL G RG GK IA LLAK L C A P Sbjct: 3 TWEEITDLQPIASRTIINSINKGRVSHAYLLQGERGTGKRDIALLLAKYLFCLHREGANP 62 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C+NC+ I+ G DL I+ + K+E R+L Y+ KVY+I + L Sbjct: 63 CHTCNNCKRIDSGNHPDLHWIEPDGQSIKIEQVRNLQKEFTYSGMESNQKVYVIQDADTL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ N LLK LEEP + ++ T + + TI SRC L+ L + + +L+ Sbjct: 123 TVNAANRLLKFLEEPSKQTTAIMLTENGHSILSTIRSRCQIIELQPLPPDVMNQRLQD-- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + H L A + ++ALSL +G ++ Q + + +D Sbjct: 181 --EGVHHLE---ANLLSALTNNTKEALSLHQDEWFAGARKIVVQLIEMYVQKPEDVYLF- 234 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + E + L +L I + + + Sbjct: 235 ------------IHQQWIPHFKERTEQQMGLDLLLLGFQDILHQHIKEDTTTVLLPKEDA 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 +M + + Q +L +++L + +E Sbjct: 283 KMERAMMSFSKEQLLFILQLILTAKRKLKQNVQPTLVMEQL 323 >UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I166_DESAP Length = 338 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 134/356 (37%), Gaps = 25/356 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 ++GQE + G + HAYLF G GVGK S+AR LA+ L C T CG Sbjct: 2 LDGIIGQELAKRYFQRAVEGGCLAHAYLFHGPAGVGKKSLARALAQALVCNTAEN-NSCG 60 Query: 75 VCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 +C CR G DL +D A + R+L + Y P G + L+ E L+ Sbjct: 61 LCPACRMFLAGSHPDLRVLDGAEKSIGIAQVRELQQALVYRPY-GARHLCLVQEAEGLTA 119 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEPP V F+L + P++LP T++SRCL+ + L ++I L Sbjct: 120 EAANALLKTLEEPPGPVLFILTSARPERLPPTVVSRCLKIPFRPLTRDEITSGL------ 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E + + + L AR A GSL A L + + L + + + Sbjct: 174 ETMGFKGDMVPLAARLAGGSLGRAAELAAGGDGLDWREKAANMAEEFLSGIGTAELFARA 233 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + ++ + + + A ++ Sbjct: 234 REL--GERAEMLVRTEYLLLWYRDLLL--------------WRETGFEGLLINADRLEQV 277 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPE 369 R AR + T+ RK+L + R+ E LR Sbjct: 278 RVQARLADGPALARSIATIEDTRKKLLANVNVRLAAEGLCLRLAGLAEEDGYDRAT 333 >UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZV3_ABIDE Length = 330 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/344 (20%), Positives = 139/344 (40%), Gaps = 29/344 (8%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG-LNCETGITATPCGV 75 +++G+E ++ + S HAY+F G +G+GK IA+ AK L+C Sbjct: 9 NILGRESLVEYMKTAASKEEFSHAYIFEGEKGMGKLFIAKEFAKMILSCGKETDEE---R 65 Query: 76 CDNCREIEQGRFVD--LIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLS 132 ++++ G D IE D + VE+ R L+ P G++KVY++ E ++ Sbjct: 66 QIVYKQVDNGNSPDIIYIEPDKPTTISVEEIRTKLVGTSDIFPY-GKYKVYIVKEAEKMN 124 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKT+EEPPE+V +L + + +L TI SRC+ +K + I+ L Sbjct: 125 EQAQNALLKTIEEPPEYVIIILLSANKNRLLPTIRSRCVTLDIKPIAANIIKEYLI---- 180 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 E+ + A+ + G++ A+ V V +L LD + Sbjct: 181 -ENYGVVDYVADMAAKFSAGNVGRAVRYACDEDFLEMKNV----VVKILRNLDKETITEE 235 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + +++ E + + M+ + +++ + A Sbjct: 236 IASIIN------------LEGYKKEIKDCIELMILWFRDLLVLKTTGDANKILFREEYRY 283 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + E + I+ +++ +K L +E+ L+ Sbjct: 284 LNEQIAKRNYSSIERALESMEKTKKRLDANVKFDTAIEIMLMYM 327 >UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Flexibacteraceae RepID=C6VRW3_DYAFD Length = 372 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 67/381 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D+ G E++ + L + + HA LF G ++A + +NCE Sbjct: 1 MLFRDIPGLENIKSTLRRSVRNSHLAHAQLFDYPAGGAGLAMALAFSTYINCENRNDDDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--------------------------------------- 93 CG C +C ++ + D I Sbjct: 61 CGTCASCVKMSKLVHPDFHFIFPIATSKKVDGKNSEAFLPLCRSFLLDNPYRVLPDWLDH 120 Query: 94 ----DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + VE+ R +L + G +K+ LI + +++ S NA+LK LEEPPE Sbjct: 121 IGADNKQGNISVEEARGILRKLSVKAYEGEYKILLIWKPDIMNAASSNAILKILEEPPEK 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + KL TI+SR + + A +I+ L+ +A Sbjct: 181 TLFLLVSDQSDKLLTTIISRTQRITIPAFSDSEIKSYLKQQ------EVSDAVANQVAFL 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 ++G++ +AL L + + + + + ++ L + Sbjct: 235 SDGNMAEALKLVQEEQDDRS-----------------AWFADWMRSSYKFDVAHLVKLAD 277 Query: 270 EAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 E + LL L L + + L ++ ++T+ ++ Sbjct: 278 SYDVMSKEKQKGLLEYALRLFRDMLVWSHGAGELLRVPQEELTFVQNFSKTVNFESLERM 337 Query: 329 YQTLLIGRKELPYAPDRRMGV 349 + + +M Sbjct: 338 IGEVNTAYYHIERNVRAKMVF 358 >UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=Entamoeba RepID=B0EMU2_ENTDI Length = 539 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 117/284 (41%), Gaps = 24/284 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP T + G E++L +L ++ +I H LF G G GKT+ A + K Sbjct: 1 MS-LPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPH-MLFYGPPGTGKTTTALAIVK 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGR 119 L CG + ++E++A+ ++ R + Sbjct: 59 QL----------CGTKFSAL---------VLELNASDERGIDVVRDQIKSFASTRTLYTN 99 Query: 120 F-KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K ++DE L++ + NAL +TLE+ + +F+ + + I SRC + L Sbjct: 100 CTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPL 159 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + +E+I +E + + A + + ++G R ++ QA++ Q++ + Sbjct: 160 SPNALTKIVENITTKEGMEIDDDAKKSIIEISKGDARSIINTL-QALSMTCKQITNSTLY 218 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 M+G Q ++ ++ + +++ G+ ++ Sbjct: 219 TMVGLPTPAQIDDIISELLSSPYFESFTVVDNLIKAGLSLNDII 262 >UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9RA67_AMMDK Length = 320 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 82/344 (23%), Positives = 132/344 (38%), Gaps = 34/344 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F V+GQE L L L GRI HAYLFSG GVGK + A A + C P Sbjct: 1 MVFGVVLGQERALRLLRRDLETGRIAHAYLFSGPEGVGKRTTAEFFACSILCLAPRE-RP 59 Query: 73 CGVCDNCREIEQGRFVDLIE--IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR G + + + ++LL V + ++V +ID+ Sbjct: 60 CGECRSCRLFRMGNHPNYYFLAPEQGGSLGIALVKELLSKVYRSA--SGYRVAVIDQAES 117 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LK LEEPP V FLL T+ + L T++SRC + L + L+ Sbjct: 118 LTLEAQNAMLKLLEEPPRLVCFLLVTSQKEALLPTVVSRCREVKFGRLPRSVVAACLKE- 176 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 P LA + GSL AL+L+++ ++ + +L L Sbjct: 177 -----RGFPPEEAACLASLSGGSLGKALTLSEE-----RVKIWRERALELLVAPRLRTLL 226 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 S E + + + +L + + QL+ E Sbjct: 227 SW-EEVKDKDLA----------------LTVLDFFTLWVRDFLVFQLTREPKLLLNGDRE 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + E +P + + R+ L + + +E ++ Sbjct: 270 EKFWEETD-LPLDYLLVAGDLADKARQWLRFNVRPAVCLEGLVV 312 >UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cystobacterineae RepID=Q1D8K6_MYXXD Length = 344 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 137/364 (37%), Gaps = 44/364 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T A V+GQ + AL L G +HHAYLF+G GVGK A LA+ L C Sbjct: 1 MTLATVLGQPRAVDALQAALRSGAVHHAYLFAGPEGVGKELAAVGLAQALTCPEQPDVG- 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-------------------KVEDTRDLLDNVQY 113 CG C +C+ +E+G D+ + +VE R L + + Sbjct: 60 CGACASCQRVERGLHPDVTWVMPDDERVSRGLAGRSDFTGTPSRELRVEQVRQLQERIAL 119 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 R KV LI ++ + NA LKTLEEPP +L + +L TI SRC + Sbjct: 120 RGLESRRKVALIVSAQTMNVQAQNAFLKTLEEPPSDTTIILVASAIDRLLPTIRSRCGKV 179 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 H L V+ + ++ E + L A A GSL A++L A++ ++ Sbjct: 180 HFGPLPVDMVAQRV-----AEARKLDAETAMLAAVMAGGSLGRAMALDVDALSRRKDTLT 234 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 EA+ + ++ E E+ L + +A Sbjct: 235 A------------------FEALRGEDAVGLLRFAEAHGGSREEAESTLELLALWTRDVA 276 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +V+ S G + R++A + + L R + R+ +E L Sbjct: 277 LVK-SGLESGLANRDMVDLARQVAARTSDILLHRRHSLLDAARAAIARNGAPRLQLERML 335 Query: 354 LRAL 357 + Sbjct: 336 IDLF 339 >UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas vaginalis RepID=A2E057_TRIVA Length = 325 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 128/299 (42%), Gaps = 30/299 (10%) Query: 1 MS----YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 MS K+RP+ D+V QE + AL L G + H +F G G GKTS+A Sbjct: 1 MSKPADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPH-LIFHGPPGTGKTSLAL 59 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAP 115 L + L E + + E++A+ ++ R + + A Sbjct: 60 ALCRSLFGED-------------------FRLRVKELNASDERGIDAVRSSVKEFASLAV 100 Query: 116 ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 G+ FK+ ++DE ++ + NAL + +E +F++ K+ ILSRC +F Sbjct: 101 PNGKIPFKIVILDEADSMTSAAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKF 160 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQAIAS--GDG 230 K LD I +L I ++++++ + + L + G LR A++ A ++ Sbjct: 161 RFKPLDRPAIIQRLHKIFDDQNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETR 220 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 +++++ ++++ G + + + A+ + + + G + + ++ L+ Sbjct: 221 KITSEIITSISGAANPSDVENYFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLI 279 >UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5H0_9BACL Length = 326 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 121/346 (34%), Gaps = 26/346 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F +++GQE L + L I HAY+FSG G G+ +A + L C G Sbjct: 1 MSFQEIIGQETAKQLLQSSLRRREISHAYIFSGPPGSGQMEMAMAFVQALFCTRGGD-DA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR++ G DL I K+E RDL Y G K Y+IDE + Sbjct: 60 CGECLECRKVLHGNHPDLFTIKPDGATIKIEQIRDLQRIFSYRSESGNPKAYIIDEAEKM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP +L + + + L TI SR ++ E + IL Sbjct: 120 TVQAANSLLKFLEEPPSPAVAILLSDNGRALLPTIQSRAQWVPFSPVNPETMLQ----IL 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + A G L L Q + V L Sbjct: 176 ANEG--FSTTLARSAVHLAAG-LGPCRDLIQQNWFAEVRNV----------------VLQ 216 Query: 252 LVEAMVEANGERVMALINEAAARGI-EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L + + G ++ G+ + +L + L + + L Sbjct: 217 LGKEIAGRGGSPIITAQQMLFKSGLTDHLDMLFSLFHLWFKDMIHALYHKHDQIVFIDEL 276 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + +K+L + + VE L+ Sbjct: 277 QFINQHCSSRSAEQWIEAMALAAESKKKLRQHMNANLCVEQFLIAV 322 >UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKB9_DESAA Length = 330 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 134/344 (38%), Gaps = 34/344 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--------P 72 Q+ L L+ L+ + HA +F+G G+GK A A NCE P Sbjct: 7 QKRALGFLSGILAKNNVAHALVFTGDAGLGKRQAAVHFAMARNCEGTPDPESAMFGSQGP 66 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CGVC +CR+I G D++ ++ K+E RDLL + P+ G+ +V LI + Sbjct: 67 CGVCGSCRKILSGNHPDVLFVEKRGASIKIEQIRDLLSVLAMRPSEGKTRVVLISGAGDM 126 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + S NALLK LEEP + F+L +L T++SRC + L V + L Sbjct: 127 TASSSNALLKALEEPSDTTCFVLLAGQKSELLPTVVSRCQEIRFSPLPVSFLIESL---- 182 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E+ +P A A GSL A +L G + ++ Sbjct: 183 --ENDGVDPDLAHACAFIASGSLDKARALASDQ-----------------GLARRNWLVN 223 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + A+ + + + L A + L + L + + + +P + + Sbjct: 224 QLCALEDQGMGQALLLAEFLAKDKNAAQEDLNWIRTWLRDLLVSRYAPQRV--INRDLMG 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + P + Q + +L + R+ +E +R Sbjct: 282 LVNSRSAKTAPEVLLEKLQAVADCENDLTRNVNTRLSMENLCMR 325 >UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=Bacillus RepID=Q5WLY0_BACSK Length = 332 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 120/338 (35%), Gaps = 22/338 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L + R+ HAYLF G G GK +A L+AK C+ A PC C +C Sbjct: 14 QPQVVPMLVASIQKNRLAHAYLFEGEAGSGKHEVALLMAKRFFCKEHNGAEPCHACSDCL 73 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G D+ ++ + K E L Y KVY++ V ++ + N+L Sbjct: 74 RIEHGNHPDVHQVAPDGQSIKKEQIEYLQKEFTYRGMESAAKVYIVSHVDKMTASAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L T + + TI SR Q QI +L E I E Sbjct: 134 LKFLEEPQGQTLAILLTENGASILPTIRSRAQQMRFLPPSQTQIASKL----VAEGI--E 187 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 LA G+ A +L + + V Q + + D Sbjct: 188 ENQALFLAALT-GNKAYAKALAEGDWSFQARTVVLQLMHELFTRPDLAAI---------- 236 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + ++ E L ML L + + A + + ELA + Sbjct: 237 ---TLADKWIPLMKERLQQEMGLEMMLLWLRDLL-YIQAGKQDKLVYADNKSKFDELALS 292 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 I+ +L ++ L ++ +E L Sbjct: 293 TSQHTIRAAMSHVLEAKRHLSANVSIQLVMERLLFTIQ 330 >UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya RepID=RFC3_SCHPO Length = 342 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 123/321 (38%), Gaps = 33/321 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP DVV + +++ L +S R+ H LF G G GKTS A+ Sbjct: 21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTSTILACARK 79 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGR 119 + L+E++A+ ++ R+ + N Sbjct: 80 IYGPNYRNQ-------------------LMELNASDDRGIDAVREQIKNFASTRQIFAST 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + NAL + +E+ ++V+F + K+ I SRC +F + L Sbjct: 121 FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++I ++H++ EH +P A + R ++G +R AL++ QA + + A+ Sbjct: 181 PKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNIL-QACHAAYDHIDVSAIYN 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +G +++++ I+ + L I Sbjct: 240 CVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKG----------LALQDILTCIFEA 289 Query: 300 AALGNDMAAIELRMRELARTI 320 ++ + + TI Sbjct: 290 LDELEIKPNAKIFILDQLATI 310 >UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ECG6_9LACO Length = 330 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/354 (20%), Positives = 138/354 (38%), Gaps = 30/354 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 QT ++ Q + + G++ HAYLF+G G GK+ +A +A+ + C P Sbjct: 3 QTITEL--QPRLTEHFMKLIEAGKLSHAYLFAGPAGTGKSELALFVAQIVFCTDKQAGMP 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR I F D++E+ KV+ R L + G K+++I + + Sbjct: 61 CGRCSECRRIADHGFPDVVEVAPDGASIKVDQIRFLKAEFSKSGVEGTKKIFIISDAEKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEP V L T + + TI+SRC +F L+AL +++ +L+ Sbjct: 121 TASAANSLLKFLEEPSGDVCAFLLTENANLILPTIISRCQEFELQALGFDELSEKLQQA- 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 I+ + +L L LTD +++ + Sbjct: 180 ---GISKDKASL-------------LLGLTDSL------EIAIELSKDDGFAAMTADVWE 217 Query: 252 LVEAMVEANGERVMALINEAAARGIE---WEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + ++ + + + + + LL ++ L+ + +++ A Sbjct: 218 WFKLIMTNDLRAFVNVTTHLKQYFSDRSRQDMLLDLIVLLVRDVMLLKF-EEHGRTSFAM 276 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +R + I + +L RK + +E L+ ++ + Sbjct: 277 HHDELRAFSEKISTQRACQATELVLDSRKLQAINVSFQNILETLTLKLVSCYHE 330 >UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharomycetales RepID=RFC3_YEAST Length = 340 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 28/318 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+T +V GQ V+T + + G++ H LF G G GKTS LA+ + Sbjct: 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGR-FK 121 + ++E++A+ ++ R + D + FK Sbjct: 72 GKN-------------------YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE ++ + NAL + +E ++ +F + KL +LSRC +F + L E Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQE 172 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----QVSTQAV 237 I ++ ++L E + P A + L + G +R L++ A+ D ++S + Sbjct: 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 232 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRI-AMV 295 G +++++++E + +N+ A+G+ L+ ++ +L Sbjct: 233 YECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQN 292 Query: 296 QLSPAALGNDMAAIELRM 313 + + L +A IE + Sbjct: 293 EETRVHLLTKLADIEYSI 310 >UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJK0_9BACT Length = 409 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 138/380 (36%), Gaps = 63/380 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT 71 + DV+GQ + L + GR+ HA LF G GVGK +A LA L C Sbjct: 37 MKYDDVIGQAAIKARLRRQVVEGRVPHAQLFCGPTGVGKLPMALALASSLLCTNRTPEGD 96 Query: 72 PCGVCDNCREIEQGRFVDLIEI--------DAASRTKVEDTRD----------------- 106 PCG C C+ + + DL I ++S T +E R+ Sbjct: 97 PCGCCAGCKMVARYAHPDLHFIFPTIRKGSTSSSDTYLEAWRERLLTSPYFDNQDWLAAL 156 Query: 107 ----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 +++ + +G +KV ++ + +S N LLK LEEPP+ Sbjct: 157 QVENQQPTFYVADSNAVIEKLSLVANQGGYKVMIVWQADKMSVEVQNKLLKILEEPPQLT 216 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L T P++L TI SR + L ++ +L +P A + +A + Sbjct: 217 VFILLTDAPERLLPTIASRVQRIDFPLLPERLLQEELST-----RNHIDPTAARDIAHIS 271 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 GS AL + ML + +L+ + + + Sbjct: 272 NGSYVQAL-----------RHIGVDEEGEML----LENFKTLMRLCYMRKVKDLRDWSDV 316 Query: 271 AAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 AA G E + L L L+ + A+L + AA AR I +I+ Sbjct: 317 AAGWGRERQKRFLDYALKLVRENFIYNFRQASLNYETAAEAEFSVNFARFINERNIEDML 376 Query: 330 QTLLIGRKELPYAPDRRMGV 349 R+++ + RM Sbjct: 377 TLFTEARRDIAANVNARMVF 396 >UniRef50_B3T4L9 Putative ATPase family associated with various cellular activities (AAA) n=1 Tax=uncultured marine microorganism HF4000_ANIW137I15 RepID=B3T4L9_9ZZZZ Length = 347 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 40/361 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----I 68 A++ GQ+ ++ L S GR+ +YLF G GVGKT+ A A L C+ G Sbjct: 1 MRLAEIKGQDRAVSGLRRDFSTGRMVPSYLFVGPEGVGKTTTAIAFAGLLLCKKGARGYE 60 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVE------------DTRDLLDNVQYAP 115 CGVCD CR++ DL+ + + KV R L+ Q P Sbjct: 61 AEDACGVCDACRKVRAESHPDLMIVRRDGQFIKVGKFEKDRKRGEPPQIRQLIAAAQRKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G KV ++DE H + + NALLKTLEEPP +L LP T++SRC Sbjct: 121 YEGPVKVLVVDEAHRMKNEAANALLKTLEEPPPGTVIILTAAMLGALPQTVVSRCRVIRF 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L+ + ++E + +L+A A+G + AL + + Sbjct: 181 RKLERSWLASEVERLRGR-----SAEEARLVASFADGRMDRAL------------EADPE 223 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V A +AL L++A +E + ++ G E EALL L L+ + V Sbjct: 224 EVFA-----RRTKALELLDAALEGRTAAALKNVSGVGRPGEEAEALLDVFLSLVRDVRAV 278 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMTLL 354 + + + +++ ++ R ++ + ++G E LL Sbjct: 279 RGGARPGFLVHEDLANELARRGSACTNKNLEDLFERARSLRADIRLKNANPQLGWESLLL 338 Query: 355 R 355 Sbjct: 339 T 339 >UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax=Eukaryota RepID=RFC4_DICDI Length = 347 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+T DV QE V++AL L+ G + H LF G G GKTS +A + Sbjct: 10 EPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPH-LLFYGPPGTGKTSTILAIAMDIY 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR------ 117 + ++E++A+ +E R + N Sbjct: 69 GPELMKQR------------------VLELNASDERGIEVVRTKIKNFAGYAVNKTTTGT 110 Query: 118 ----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FK+ ++DE ++ + AL +T+E + +F L ++ + SRC +F Sbjct: 111 SNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKF 170 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 K LD +L+ I +E I E Q + + G +R A++ A ++S Sbjct: 171 RFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKIS 230 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + G+L LV+ + + +R+ +++ A+G ++ ++ + Sbjct: 231 EDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYV 286 >UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax=Bacillus RepID=Q73FH7_BACC1 Length = 327 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 126/350 (36%), Gaps = 32/350 (9%) Query: 13 QTFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 +T+ + Q + L N ++ RI HAYL G +G GK + A +AK C Sbjct: 3 KTWEQLSAIQPIGVKMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVE 62 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC VC NC+ I+ G +L + K + DL + KVY+I+ Sbjct: 63 PCHVCTNCKRIDSGNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ ++ N LLK LEEP +L T ++ TILSRC + L E + +L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQD- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + L LA S +AL+L + + + Sbjct: 182 ---EGVTTS---LSTLAAQLTNSFDEALALCSDEWFAQARAL----------------VI 219 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEAL---LVEMLGLLHRIAMVQLSPAALGNDMA 307 L EA+ E + + + + E E L L +L + + Sbjct: 220 KLCEAL-EKDKASIFFVQEKWGKHFGEKEQLQQGLDMLLLIYKDLL-YVQLGEEDRLVFH 277 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + I +L + + + ++ E +LR Sbjct: 278 EQKEMFESFS--YAQKRIVSALFNILEAKNRINANVNAQLVFEQLVLRLQ 325 >UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales RepID=P73507_SYNY3 Length = 1116 Score = 189 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 105/466 (22%), Positives = 178/466 (38%), Gaps = 17/466 (3%) Query: 87 FVDLIEIDAASRTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + E+++ ++ +VE DL +++ A G L+ HMLS +FNALLKTLEE Sbjct: 522 HTNFEEVESVTKGQVEKVYDLEVEDNHNFVANG----LLVHNCHMLSTAAFNALLKTLEE 577 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PPE V F+LATTDPQ++ TI+SRC +F + + ++ + L +I E+I + AL L Sbjct: 578 PPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPLQAMVDHLRYIAGRENINIDQPALTL 637 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 +A+ A G LRDA SL DQ + ++ V ++G + + L+L+EA+ + E ++ Sbjct: 638 VAQIANGGLRDAESLLDQL-SLLPDLITPDKVWDLVGAVPEQDLLALLEAIASDDAETLL 696 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA--ALGNDMAAIELRMRELARTIPPT 323 A + RG E +L + + + Q +P L A + + A Sbjct: 697 ATCRQILNRGREPLVVLQNLASFYLNLLIAQTAPQRSDLVAVTAETWQALCDTAPQWQRG 756 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAV 383 I Q L ++ R+ +E+TLL L + P Sbjct: 757 VILQGQQKLKESEIQIRNTTQPRLWLEVTLLGLLPSACGLDTGAVSQTAVRTPVAQPITP 816 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 P+ V P + V P + + + A + Sbjct: 817 PKPSNVVTFPGGSHNHLTVVDSPTMIPVSEPIVLEEKLEADVEPSSFEPSNAHWDLTQLW 876 Query: 444 NAAL-------ERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKA 496 + L + L + +A ++ ++ A ++ Sbjct: 877 SETLNNLGALSQSLFKSFGSLINLVGNNATVSVTTQQLLKIAAGKKDELEAALGQACGQS 936 Query: 497 LKKALE--HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +K L TPE +A A + S P A Sbjct: 937 VKVNLVVGKPSTPETTPVNSAPPPSHSKPPAFAPEPSPPPTAAVNA 982 Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 75/163 (46%), Positives = 104/163 (63%), Gaps = 7/163 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ + L+N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQTAIAATLSNAIEQERIVPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G TATPCG C CR I G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCIAGDRPTATPCGQCATCRAITNGSALDVIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSF---NALLKTLEEPPEHVKFLLATTD 158 R+KVY+IDE L+ S L +++ P + +L+ + Sbjct: 121 RYKVYVIDEC--LTGDSQVLTRNGLMSIDNPQIKGREVLSYNE 161 >UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0DZN9_9CORY Length = 925 Score = 189 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 162/396 (40%), Gaps = 13/396 (3%) Query: 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 +D+ E+DAAS V+D R+L D +APA R+++++IDE HM++ NALLK +EEP Sbjct: 10 NLDVTELDAASHNGVDDMRELRDRAMFAPAESRYRIFIIDEAHMITNQGSNALLKIVEEP 69 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P H+ F+ ATT+P+K+ TI SR + + L + +R LEH + E E L+ Sbjct: 70 PAHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQAMRGLLEHTVAAEDAIIEESVYPLV 129 Query: 207 ARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 RA GS RD LS+ DQ +A +G ++ Q +LG DD + + A+ + + Sbjct: 130 IRAGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLLGVTDDTLIDATIAALATNDRASLF 189 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN----DMAAIELRMRELARTIP 321 +++ G+ ++L L + ++Q P A+ + + + Sbjct: 190 TTVDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDAVNLGLVDAPTDRGEILLQQTQEFD 249 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 I L G L A R+ +E+ + L P P + S P Sbjct: 250 SQRIPRIAGILNDGLSSLKGATSPRLLLEILCAKMLIEPGGQAAPVPALSAPSARPTP-- 307 Query: 382 AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 P S+ + P+ + ++ + V+ + K EP + R Sbjct: 308 ------AAPASTPSSKYERPSQRRAREAQEARNVVEKPEVVEAPVETKPQEPEESPETRS 361 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 V + + +K A Sbjct: 362 TPPQPASTSVHVQPIDAIKNAWDKIRSTVSKTNAVA 397 >UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Eukaryota RepID=A8Y3K6_CAEBR Length = 551 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 124/314 (39%), Gaps = 36/314 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E V+ L + + H LF G G GKT+ A+ Sbjct: 224 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAARK 282 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG-- 118 + + + ++E++A+ ++ R+ +++ Q + Sbjct: 283 MYHPSKM------------------SSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFA 324 Query: 119 --------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 FK+ ++DE +++ + NAL + +E+ ++V+F + + I SRC Sbjct: 325 SASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRC 384 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 +F LD I +L+ I+ E + P + L R ++G +R ++ Q+ A Sbjct: 385 TRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTL-QSTAMSFE 443 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLL 289 VS V +G + +V ++ + M I + G L +++ L Sbjct: 444 VVSESTVYQCIGQPTPAEMKKVVTLLLNQTAKTCMNKIKKSLFENGY----ALQDVITHL 499 Query: 290 HRIAMVQLSPAALG 303 H +A P + Sbjct: 500 HDLAFSMDIPDSAM 513 >UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNT7_CLOCL Length = 312 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 119/346 (34%), Gaps = 37/346 (10%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++++G E V L HA++ +G G GK+ +A+ A + ++ Sbjct: 1 MEFSNIIGNEEVKKQFVKNLEAKTFAHAHIIAGEDGSGKSLMAKSAAIKILSKS------ 54 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 + D+IE + V+D R L++ P G KV +I + Sbjct: 55 ----------IYQNYADIIEFKTSKASIGVDDIRVLIEETNKKPFEGDKKVIIIYNAEKI 104 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + NA LKT+EEPP+ V L + +K+ TI SRC L+ L E+++ L Sbjct: 105 TVQGQNAFLKTIEEPPKGVFIFLLCENLEKILDTIKSRCQIHRLRRLSYEEMKLFLSKNY 164 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + ++ L ++G ++ + Sbjct: 165 KN----IKAEEMKPLIAFSDGIPGRVEKYFTDDAFRNIRNITME---------------- 204 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ ++ ++ + W+ +L + + + + + Sbjct: 205 ILISITGKEVYELLKYEEQLMKYKNYWQDVLSSFISYVRDALIYKETGDEQYIINIDKID 264 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ + + + T+ + + + + +M LL+ Sbjct: 265 EIKIITDSFSYNKLNKIIDTISYVKDNMQSNVNPSVTFDMMLLKFQ 310 >UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Thermoplasmatales RepID=RFCS_THEVO Length = 318 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 138/333 (41%), Gaps = 26/333 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++ K+RP++ +++ G++ + L + + + H LF+G+ G GKTS A LA L Sbjct: 3 EIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPH-LLFAGSVGTGKTSTAIALAIELF 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPAR-GRFK 121 E+ + IE++A++ ++ R+ + D + P+ FK Sbjct: 62 GESWKE-------------------NFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK 102 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE L+ + AL +T+E E +F+ A K+ I SR + + + E Sbjct: 103 ILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDE 162 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ +L I E + +++ + + G +R A+++ G++S + + ++ Sbjct: 163 FIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAV--YTSGEISPKKIYEII 220 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L+ + + ++++ G+ ++ + ++ + Sbjct: 221 GYASPESVNKLISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKI 280 Query: 301 ALGNDMAAIELRMRELA-RTIPPTDIQLYYQTL 332 + +A E R+ E + I + + Sbjct: 281 EIIKALADAEFRIVEGSNDRIQLDALIARIADI 313 >UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V4M8_9FIRM Length = 346 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 145/354 (40%), Gaps = 35/354 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P ++D+ G ++ L + G + HA +F+G G+GK AR+LA+ L C Sbjct: 18 PHDWSDIRGHAEIIRCLRRLAADGHLPHALIFTGAAGIGKRRTARVLARTLLC-AAEGNA 76 Query: 72 PCGVCDNCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR G D E+ A+ + + RD+L +P R ++ LI Sbjct: 77 PCGRCDDCRMTAAGVHPDYFEVIPEARGKGAAMIRADAVRDILIAASESPQRAGRRIILI 136 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D VH ++ + N LLKTLEEPP V FLL T + TI SR ++ L +I Sbjct: 137 DGVHSMNEVAANRLLKTLEEPPATVLFLLVTDAWDAVLPTIRSRAVRIAFGPLPRAEIAA 196 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L+ IAH + +A A+GSL A +L + ++ D +S + L Sbjct: 197 ELQR----RGIAH----AETIAALADGSLGRAETLAAEGLSLRDDALSFLTILETL---- 244 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGN 304 E + + R + A L + L + +++ + AA Sbjct: 245 --------------RIEDIWKHAEQLGGRSYDERAAWLGYLQMALRDLLVLREN-AAAEL 289 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + EL +P + L + + + + + E LRA Sbjct: 290 YHVDRRAELTELLPAMPRQRVLLLMEEAGVLLRRFGANVNPALQAEAFFLRARQ 343 >UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPS4_9FIRM Length = 338 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 138/356 (38%), Gaps = 28/356 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + ++VG + + L L GR+ HA LF+G GVGKT +A+ A L C+ A P Sbjct: 1 MFWDEIVGHDETIKMLQGMLRRGRLPHALLFAGPEGVGKTLVAKAFAAALLCQ--EAAAP 58 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR+ + L I A K++ R L A +++ +I++V + Sbjct: 59 CGRCLICRQAAEFAHPALQVIVPAGNTIKIDQIRQLQHEAALAG-GDEWRLCIIEQVERM 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP + F+L T P + TI SRC L E + L Sbjct: 118 TAQAANSLLKLLEEPPPRLIFILLTALPHAVLSTIRSRCQVLRFAPLPPEVLAAALSR-- 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + A ++ AR + G + AL+L G DQA + Sbjct: 176 ----RGYGEEAARVAARLSGGRMGTALALLTPG-----------------GMALRDQAAA 214 Query: 252 LVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + AN E V +L+ ++ A L + LL + ++ + Sbjct: 215 ILANLPAANMETVWSLVAMLDKLAPADFTAFLHYLTCLLRDLLLLADGHRPDLLFNLDLT 274 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + L + P+ + + + + R+ E + + Sbjct: 275 HELAGLVQAWTPSALFAALAAVRDAGRAVQGNASIRLTCEALFIHLVDLAKEGSDA 330 >UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostridium acetobutylicum RepID=Q97M98_CLOAB Length = 314 Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 127/345 (36%), Gaps = 40/345 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ G E V + R HA + G G+GK+ +A+ +A L +T Sbjct: 1 MKFENIFGHEAVRKQFDELVKNKRFPHAIMLCGEDGIGKSIVAKEIAAKLLNKT------ 54 Query: 73 CGVCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 E + DLIE + V+ R +++ V P G K+ ++ ++ Sbjct: 55 ----------EIKEYADLIEWKILNDKKSISVDQVRKIIEEVNKKPYEGNNKLIVVHDMD 104 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ NA LKT+EEPP V +L ++ T+ SRC + L LD ++R + Sbjct: 105 YMTIQGQNAFLKTIEEPPLGVYIILLCQSQGRVLDTVRSRCQIYKLNRLDEHEMR---KF 161 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 I ++ +E LLA ++G + ++ ++A+L Sbjct: 162 ISGTYNVTNEDEMRTLLA-FSDGIPGKVDDFLNDKSL---KEIRNMVINAILN------- 210 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 + + N + ++ N+ + W + + + + + + Sbjct: 211 ------IKKLNPKDIVDAANQLSEYKKLWREICNYFVLYIRDALVYKETGNKELLINLDK 264 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD-RRMGVEMTL 353 ++++A + + + G+ L + VEM Sbjct: 265 IEDIKKIASQFSMKQLNRMVEAVNYGQSNLETNVNMPLTYVEMLF 309 >UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazoa RepID=RFC4_HUMAN Length = 363 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 131/349 (37%), Gaps = 34/349 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 121 ------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +++ Sbjct: 199 FKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEIT 258 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + ++ + G + ++ + A + +++ A++ + G +++ LH + Sbjct: 259 EKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG----HAATQLVNQLHDVV 314 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + + + + + +Q ++L Sbjct: 315 VENNLSDKQKSIITEKLAEVDKCLADGADEHLQ-LISLCATVMQQLSQN 362 >UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ16_THEYD Length = 319 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 41/338 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ QE + L L +I +A LF G +GKTS A AK LNC Sbjct: 1 MGFNKIISQEKAIKLLKGTLRTKKIPNALLFLGDAYIGKTSTAIAYAKALNCLNSENEDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C CD+C++IEQ D+ I V R++ + V P G++KV +I E H + Sbjct: 61 CDSCDSCKKIEQRLHPDIKIIAPEKDVITVNTIREVEEFVSLKPLEGKYKVVIIKEAHKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA LKT+EEPP +L + LP ++SRC + + L ++ I+ + + Sbjct: 121 NNAAANAFLKTVEEPPFMTTIILICENIHNLPEPLISRCFKVYFTPLSIDAIKKIIPD-M 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 +E + I G ++ + D + Sbjct: 180 QQESFF-------------------------RIIMGKPGLFMSRDILK-----DIQWFSA 209 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + E N + + E + + + L + ++ + + Sbjct: 210 TLKNIKENNKKAIW-------KDNEEIKWWIDFLCIFLRDSLIKLINKVSSDCCLILPLD 262 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +L I +I Y+ + ++ + ++ + Sbjct: 263 F--KLKENISVQEIFNLYEEVQNIKRNIDLNLNKSILW 298 >UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYD5_9DELT Length = 352 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 138/361 (38%), Gaps = 33/361 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITAT 71 TF+ ++ Q+ L + G++ HAYLF G GVGK + AR LA LNC+ Sbjct: 4 TFSQIIEQQQAKEILRRAVGGGKLAHAYLFRGPAGVGKKTAARALAAALNCQGDRPEPLE 63 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR+ D +EI K++ R+L +Q+ P +V ++ EVH Sbjct: 64 ACGRCPSCRKFASANHPDFLEIMPEGAGIKIQQVRELKKALQFPPLEAGRRVVVLGEVHT 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 + R + N+LLKTLEEPP LL + + TILSRC L VE + L Sbjct: 124 MRREAANSLLKTLEEPPADTILLLTGDEAGGILPTILSRCQIIPFYPLPVETLARTLYQE 183 Query: 191 LNEEHIAHEPRA----------LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + E LA AEGSL A L +Q + + Q + ++ Sbjct: 184 ATDHRQELEMATDWSSDPVFQNCLTLATVAEGSLGRARQLQEQELL----PLRRQVLESL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 L + A V+ A E L + H +A++Q Sbjct: 240 LNLQPEAPAA----------PAVVLYWAERCAQLKEELPDFLDLLTSCYHDLALLQTLSP 289 Query: 298 ---SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + A P ++ Q L + L +R + E+ Sbjct: 290 QDPANRHNPIINRDLLPLLSAAAAHRGPATLESCRQHLRRAQGRLRRNCNRTLVCEVLFF 349 Query: 355 R 355 Sbjct: 350 D 350 >UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=Paenibacillus RepID=C6CRH9_PAESJ Length = 325 Score = 185 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 122/346 (35%), Gaps = 24/346 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + V GQ L + L G++ HAYLF G G G+ ++AR AK L C +G Sbjct: 1 MSMEQVAGQWKAKRILKHALQSGKVSHAYLFYGPSGTGRKAMARAFAKALFCTSGGD-DA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C CR+ E G DL+ I + K++ R+L + Y + KVY+++ + Sbjct: 60 CDHCLECRKFENGNQPDLLTITPDGQSIKIDQIRELQRELAYRGSGASRKVYIVERAETM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEP + +L T + Q + TI SR ++ L Sbjct: 120 TLQAANSLLKFLEEPLSPIVAILITDNGQAVLPTIRSRAQWVPFLPFSASEMLQSL---- 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 +E P + + + G L A + Q + V Q L Sbjct: 176 VDEG--ASPTLARAAVQLSSG-LDGAREIIQQNQFAEIRNVVIQLGKESLTRFTAGML-- 230 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + G E + +L ++ + + Sbjct: 231 -----------TAQQQFFKTDLAG-EAQLMLSLLVLWFKD-MIQFQAGRQESIVYIDQLD 277 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A P + L K++ ++ VE L+ Sbjct: 278 WISKHAFNRPIESWIACIEHTLEAGKKIRSNVSPQLAVEQLLVNLQ 323 >UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0ERC2_ENTDI Length = 329 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 137/353 (38%), Gaps = 34/353 (9%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Q + K+RP+T DV GQE V+ L + L G + + LF G G GKT+ +A Sbjct: 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPN-LLFFGPPGSGKTTSILAVA 58 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG- 118 L ++E++A+++ +E R L N Sbjct: 59 HELFQGYFKER-------------------VLELNASNQRGIEMVRTTLKNYAMQDVTHY 99 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 +K+ ++DE L+ + AL + +E+ ++ +F L ++ I SRC++F Sbjct: 100 DGIPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFR 159 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 AL E + ++L+ I +E + A+Q ++ +EG LR + L + + V+ Sbjct: 160 FSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTP 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 Q +S + G + + ++ + + +E +L L + + Sbjct: 220 QDISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLV---VEQNYSADSILSQLRDVYI 276 Query: 295 ---VQLSPAALGNDMAAIELRMRELARTIPPTD-IQLYYQTLLIGRKELPYAP 343 V L+ + I L P I +L +L P Sbjct: 277 EDCVNLTNQERCLFLQLIAQSDATLIDKTDPLFSICALLCSLFKFYHKLTLNP 329 >UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Tax=Trypanosomatidae RepID=Q4FWE5_LEIMA Length = 364 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 133/363 (36%), Gaps = 43/363 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S+ K+RP T VV E +L+ L + + G + H L G G GKT+ + A Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPH-LLLYGPPGTGKTTTIKACAYY 73 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL-LDNVQYAPAR--- 117 L + + A +++E++A+ ++ R + + Sbjct: 74 LYGKARVRA------------------NVLEMNASDDRGIDVVRQQTREFASTSSIFSMM 115 Query: 118 --------------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 +FK+ ++DE +S + AL + +E+ +V+F + K+ Sbjct: 116 GTGSSTGGGSGGPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKII 175 Query: 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 + SRC +F + + +L ++ +E + + L R + G LR L+ Q Sbjct: 176 PALQSRCTRFRFAPVKKSSMMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTM-Q 234 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 A A +++ ++V + G ++V M+ ++ +A ++ + Sbjct: 235 ASALSANEITEESVYRVTGNPTPADVTAIVSDMLSSDFATSW---VKAEESVVQKGISMA 291 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 ++ +H + M P + + A LL + + A Sbjct: 292 DLTREIHPVMMAMDLPQDCKCFLLMKLSDLEYYAAGGARE--SAVLGGLLGAFQLVKEAV 349 Query: 344 DRR 346 +R Sbjct: 350 TQR 352 >UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=Caenorhabditis elegans RepID=RFC5_CAEEL Length = 368 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 124/314 (39%), Gaps = 36/314 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E ++ L + + H LF G G GKT+ A+ Sbjct: 27 SNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAARQ 85 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG-- 118 + T + + ++E++A+ ++ R+ +++ Q + Sbjct: 86 MYSPTKMAS------------------MVLELNASDERGIDVVRNTIVNFAQTKGLQAFS 127 Query: 119 --------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 FK+ ++DE +++ + NAL + +E+ ++V+F + + I SRC Sbjct: 128 TSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRC 187 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 +F LD + I +LE+I+ E + P L ++G +R ++ Q+ A Sbjct: 188 TRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTL-QSTAMSFD 246 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN-EAAARGIEWEALLVEMLGLL 289 VS V +G + +V+ ++ ++ M I + G L +++ L Sbjct: 247 TVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGY----ALQDVITHL 302 Query: 290 HRIAMVQLSPAALG 303 H P Sbjct: 303 HDFVFTLDIPDEAM 316 >UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Tax=Thermomicrobia (class) RepID=B9L1A1_THERP Length = 350 Score = 184 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 135/346 (39%), Gaps = 29/346 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + LA + G++HHAYL +G G+G+T++A + A+ L CE PCG C Sbjct: 18 IIGHEGAVRTLARAIESGQVHHAYLLAGPAGIGRTTLAFVFAQALLCEGAAEQRPCGTCR 77 Query: 78 NCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +C+ I + D+ I + A + ++ R+L ++ P G ++V ++D+ L Sbjct: 78 SCQRIARRVHPDVTRIGLDTGAEEAKQVSIDQVRELRASLSLRPLEGAWRVAIVDDAERL 137 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 SR + +ALLKTLEEPP + +L D Q LP TI SRC L+ L + + L Sbjct: 138 SREAADALLKTLEEPPPYAVLVLVAEDAQALPETIRSRCQTIVLQPLPISVVARAL---- 193 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E P LAR G + A L A + V A + + Sbjct: 194 --EVRGAAPELANRLARETRGRIALAFRLVSDEAARVQREKRVAEVIAAMTEPLAAIGFA 251 Query: 252 --LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L E V++ L L L + P+A Sbjct: 252 RRLAEQYRRGRRAEVLSS--------------LQLALELWRDALWLAADPSAP-IVHEDA 296 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + AR L +L R+ ++ ++ Sbjct: 297 RTTLERFARRCGIAGACAGLSATLQALADLEANVQARLALDAAMVT 342 >UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Tax=Arthrospira RepID=Q84FP3_SPIPL Length = 768 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 134/308 (43%), Gaps = 3/308 (0%) Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 L+ HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + ++ Sbjct: 261 LLVHNCHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQA 320 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + LE I +E+IA P A+ ++A+ A+G LRDA ++ G+++ + V ++G Sbjct: 321 MATHLETIAAKENIAITPEAVMMVAQIAQGGLRDA-ESLLDQLSLLSGEITVERVWDLVG 379 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 + + ++L+EA+ E ++ E RG + +L + + + + +P Sbjct: 380 AVPERDLMTLLEAIAEGKATAILDQTRELLNRGRDPLIVLQNLGEFYRDLLIAKTAPNRQ 439 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + ++ I + L ++ R+ +E+TLL L Sbjct: 440 DLVKLTQPTWESLCAFSQRWEHEIILAGQKHLRDSEVQIKNTTQPRLWLEVTLLGLLPEA 499 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 R V P++ P AP Q + + + Sbjct: 500 LRPQTVSTGVVNVQPQPISNQPTSKMRSQPVYKPPAPAQPVSQAVSVPDAPPPPPPPPQP 559 Query: 421 RVQGATKA 428 +A Sbjct: 560 TTANQEEA 567 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 135/653 (20%), Positives = 223/653 (34%), Gaps = 70/653 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQE + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG+C+ CR I G +D +EIDAAS T V+ RDL++ Q++P + Sbjct: 61 SLNCLQTSNPTETPCGICEVCRGITTGATLDFVEIDAASNTGVDHIRDLIERTQFSPVQC 120 Query: 119 RFKVYLIDEVHMLSRHS---FNALLKTLEEPPEHVKFLLATT------DPQKLPVTI--- 166 R+KVY+IDE L+ + + +++P +L+ + Q++ + Sbjct: 121 RYKVYVIDEC--LTGDALILSDRGWLRIDDPTLQECRVLSYNESTQQWEWQQVLRWLDQG 178 Query: 167 LSRCLQFHLKALDVEQIRHQLEH----ILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 + + +++ + L + +I + + L AA ++ AL + Sbjct: 179 VRETWKIKTFQTEIKCTGNHLIRTDKGWIKAANITPKMKILSPEIDAA---VKTALQDVE 235 Query: 223 QAIASGDGQVSTQAVS---------------AMLGTLDDDQALSLVEA--------MVEA 259 G V V ML T + L +E + Sbjct: 236 SIEKLGVNHVYDIEVEHNHNFVANGLLVHNCHMLSTAAFNALLKTLEEPPDRVVFVLATT 295 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRI-------------AMVQLSPAALGNDM 306 + +RV+ I R L M L I MV D Sbjct: 296 DPQRVLPTIISRCQRFDFRRIPLQAMATHLETIAAKENIAITPEAVMMVAQIAQGGLRDA 355 Query: 307 AAIELRMRELARTIPPTDI--------QLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ ++ L+ I + + TLL E E L R Sbjct: 356 ESLLDQLSLLSGEITVERVWDLVGAVPERDLMTLLEAIAEGKATAILDQTRE-LLNRGRD 414 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + A AP P +S + + R Sbjct: 415 PLIVLQNLGEFYRDLLIAKTAPNRQDLVKLTQPTWESLCAFSQRWEHEIILAGQKHLRDS 474 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 +++ T+ + P V + K ++ Sbjct: 475 EVQIKNTTQPRLWLEVTLLGLLPEALRPQTVSTGVVNVQPQPISNQPTSKMRSQPVYKPP 534 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 PV Q V P + + A + + + + QL L+ Q Sbjct: 535 APAQPVSQAVSVPDAPPPPPPPPQPTTANQEEAVNYSLEELWEQILSAIEQLGTQALMRQ 594 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + N VC+ L+S + L A + + +++ + Sbjct: 595 --HGCLRSHHGNVVCIGLKSHPLLKIAQAKISSLEVACQKVFNTKIQVNLEVG 645 >UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LSD1_9FIRM Length = 336 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 99/358 (27%), Positives = 134/358 (37%), Gaps = 34/358 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ DV+G E + L L GR+ HA LFSG GVGK +ARLLA L C G PC Sbjct: 6 SWKDVLGHEGNIHRLRTMLRDGRLPHALLFSGISGVGKKKVARLLAAALLC--GREDAPC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTK------VEDTRDLLDNVQYAPARGRFKVYLIDE 127 GVC +CR G D +E SR K ++ R++ P V L+D+ Sbjct: 64 GVCPSCRAFLAGTHSDYVEAAPESRGKGVRVLRIDAVREIEKKAARKPLLSGRFVVLVDD 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V FLL T L TILSR H AL E I L Sbjct: 124 ADAMNEAAANSLLKTLEEPQGAVFFLLVTAKRTALLPTILSRVRDMHFGALSPEGIEEAL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 E R LA AA+GSL AL L + G Q+ A + Sbjct: 184 LA------RGVESRKAHSLAMAADGSLGHALLLFE----GGGLQLMEDAAQTLF------ 227 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ N + A E + E L+ + LL + + Sbjct: 228 -------SLSALNMFSLWAKAEELGKLPRDRAEEWLLALSRLLRDMLALLSGRGR--LYH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + P T I + L ++ E L+R Sbjct: 279 EEKRGDLAHALADFPETHIFACLALVRETLGRLRSNASVQLLFEGLLMRLRDAQESER 336 >UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenophorea RepID=Q245Y3_TETTH Length = 373 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 117/295 (39%), Gaps = 28/295 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP +V QE V+ +L L G + H + G G GKTS AK L Sbjct: 42 LPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPH-LILHGPPGTGKTSSILAFAKQLY 100 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR---- 119 T ++E++A+ ++ RD + Sbjct: 101 GPTFYKER------------------ILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKS 142 Query: 120 -----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + +AL + +E+ +F + K+ + SRC++F Sbjct: 143 FKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFR 202 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K + +E +LE I E I +E AL+ L + + G LR +++L A + + Sbjct: 203 FKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKV 262 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + + G L + ++ + +++ + + +G + LL + + Sbjct: 263 EVIEEISGVNYLLCINKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYI 317 >UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=Apicomplexa RepID=B3L1L0_PLAKH Length = 339 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 130/337 (38%), Gaps = 26/337 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ DVVG V+ L + + G + + L +G G GKT+ LA + Sbjct: 18 WIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTTSILCLASEMLGP 76 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFKV 122 A ++E++A+ + RD + + G+ K+ Sbjct: 77 QAKKA-------------------VLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKI 117 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DEV ++ + +L + +E + +F LA +K+ + SRC L +Q Sbjct: 118 IILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQ 177 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + ++ I E+I + L+ L A+G LR A++ Q+ +G ++ + V + Sbjct: 178 VLKRIVKICEMENIKYTDDGLETLTFIADGDLRKAVNCL-QSTYAGLEVINKENVLHICD 236 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ +L++ + + ++ + + G + + +L R + S Sbjct: 237 IPSPERIENLLKFCINSEWKKAHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIE 296 Query: 303 GNDMAAIELRMRE--LARTIPPTDIQLYYQTLLIGRK 337 + A+ LA I + + + Sbjct: 297 FLKIGAMACNTMASGLASVIQLDRLLADWCIAAKALR 333 >UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putative n=2 Tax=Porphyromonas gingivalis RepID=Q7MVV1_PORGI Length = 416 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 137/383 (35%), Gaps = 63/383 (16%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 RP F DV G E + T L +I HA LF+G G G +A A+ LNC+ Sbjct: 33 HRPMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQMPTD 92 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASRTKV------EDTRDLLD-------------- 109 CG C +C + + DL + + R + Sbjct: 93 TDACGHCPSCVKYDALAHPDLFFVYPVVNASSSPAPSDDYIRQWREMLGSESYFTPADWL 152 Query: 110 ----------------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + + ++V +I + ++ N LLK +EEPP Sbjct: 153 EYIKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPP 212 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 EH F + +++P K+ TI SR +++ L +I L + + +A Sbjct: 213 EHTLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSR-----NNQGNTADIIRIA 267 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 AEG+ R A+ L A D V ++ ++++ + ++ + Sbjct: 268 HLAEGNYRRAMDLYRGEWADRDNFV---------------LMGRMMGSIIKGDPSKMRPV 312 Query: 268 INEAAARG-IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 +E AA G + L L L + + ++ A L E + L+ I +I+ Sbjct: 313 ADELAALGRVSQIGFLTYCLRLFRELYISRVGVAKLNYLSPEEESFVDMLSGGITGQNIR 372 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 + + + + + + RM Sbjct: 373 PVMEEVELAIRHIRQNGNGRMIF 395 >UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A090_DESOH Length = 332 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 132/346 (38%), Gaps = 38/346 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-------- 72 QE L LA L+ G I HA+LF+G G+GK S A A NC + P Sbjct: 3 QEKPLRTLAGILARGDIPHAFLFTGIDGIGKRSAAMGFAMACNCLAAVQEKPLPVPVPGD 62 Query: 73 -----CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C CR I G D+I I K+ R+L++ V + P + + +I Sbjct: 63 SGLPFCGTCRICRAIAAGTHPDVITIAPEGNAIKIGRIRELIEKVAFRPHEAKMRAVIIS 122 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + ++ + NALLK+LEEPP F L L T++SRC + ++I Sbjct: 123 DAWAMNPEAANALLKSLEEPPPQTLFFLTAEHASDLLPTVVSRCRHIRFAPVSADRIAAF 182 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L+ H + +A + A + GS+ AL+LTD + + ++ + Sbjct: 183 LQQ-----HHGVDEKAARSAALMSGGSVARALALTDVPLGAWRQWLAAELA--------- 228 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 A+ V+A + + L + L+ + + P + N Sbjct: 229 --------ALPSRPVPLVLAFAEKLQKNKDQIGQWLGMIQTCLYDAVVWKYQPGRIMNI- 279 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + L+ + ++ K L + R+ E Sbjct: 280 -DMTDAVAALSEQESIASLGRKIDAVVAMEKALNRNLNPRLATEKL 324 >UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia intestinalis RepID=A8BRC3_GIALA Length = 322 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 23/291 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M ++RP+T ++G +L L + G + + LF+G G+GKT+IA Sbjct: 1 MKALPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPN-ILFAGGPGLGKTTIAL---- 55 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 C + + R V +E++A+ V D R + Sbjct: 56 ---------------CLANQMLGAHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPA 100 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G K+ +DE ++ + L + +++ +F LA + K+ + SRC + Sbjct: 101 GIQKLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMP 160 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ L+ I +E + + AL+ L + +R L+ + + ++ V Sbjct: 161 ATQAELIKYLQEICEKEGVKSDTEALKELISISGNDVRSCLNSLQLVADANNKVITVAGV 220 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L T+D +++ + + LI+ G ++ + M Sbjct: 221 QKALSTIDVKVIDQVMKLLTSGKFDDGWMLIDNQLNEGYNYDDIYNAMFRY 271 >UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryota RepID=RFC2_HUMAN Length = 354 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 130/338 (38%), Gaps = 29/338 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP ++VG E ++ L G + + + +G G GKT+ LA+ L Sbjct: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARALL 94 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRF 120 A ++E++A++ ++ R+ + GR Sbjct: 95 GPALKDA-------------------MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRH 135 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE ++ + AL +T+E + +F LA K+ I SRC L Sbjct: 136 KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTD 195 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +L +++ +E + + L+ + A+G +R AL+ Q+ SG G ++++ V + Sbjct: 196 AQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL-QSTFSGFGFINSENVFKV 254 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +++ V AN + ++ G E ++ + + M + Sbjct: 255 CDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKL 314 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 ++ +++ E + L ++ Sbjct: 315 EFIKEIGYTHMKIAE-----GVNSLLQMAGLLARLCQK 347 >UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZZ9_UNCTG Length = 319 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 36/330 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI----TA 70 F ++GQ+ + ++N + G+I HAY+F G GVGK A AK LNC A Sbjct: 2 FESILGQKKIKKIISNQVKSGKIAHAYIFVGQDGVGKRLTAVEFAKILNCNVDDFIKTDA 61 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRT-------------KVEDTRDLLDNVQYAPAR 117 CG C +C++IE+ DL ID A + K+E R + V Sbjct: 62 GTCGKCISCKKIEKNIHPDLHFIDFARQAELEEECLEKQRTLKIETIRYMQKEVATKIHE 121 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++K+++I+ ++ + N+LLKTLEEPPE+ +L + +P TILSR + Sbjct: 122 GKWKIFIIEPAERMNAAAANSLLKTLEEPPENTIIILIAKHKETIPQTILSRVQTLFFQP 181 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L +I L + + + +A +EGS + A + Sbjct: 182 LGQNEISSWLMLNC-----SVDAAKARDIAELSEGS-------LENAKKLVGKNEKEEFS 229 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEAL------LVEMLGLLH 290 + + ++E + ++ ++ +++L Sbjct: 230 LWLKFKTRNFYISDILELSKNIAAAGALECVDAMIAEAKKDFRMYPQRTAPALDLLSASR 289 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + ++ + +++ +++++ + Sbjct: 290 VLLLKNVNAMTVLDNLFFDLSDLKKMSGLL 319 >UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clostridium RepID=A5HXV3_CLOBH Length = 314 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 127/342 (37%), Gaps = 37/342 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E++ + N + G+ HA + G G+GK+ IA+ +A + ++ Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIILEKSQQ--------- 56 Query: 78 NCREIEQGRFVDLIEID--AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + DLIE ++D R+L++ + P G KV +I + +++ + Sbjct: 57 -------RSYADLIEFKPINKKSIGIDDIRNLIEEINKKPIEGNKKVIIIYKSELITEVA 109 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NA LKT+EEPP+ V +L + +++ TI SRC F L L I + +++ + Sbjct: 110 QNAFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRLKPCDIENFIKYKYKDIK 169 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + A+ ++G A + +S + + + Sbjct: 170 KENINSAIA----FSDGIPGKAERFIEDESLKYIRDMSLGILKDSKDLSNYNYL------ 219 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + N WE +L +L L + + + + ++ Sbjct: 220 ---------IKYENFLINYKENWEEILTCILSYLRDSLLFKETGDEELLLNVDKKEYIKH 270 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ ++ + R +L + + + L++ Sbjct: 271 ISEKYSYINLDKMVSIINDTRDKLSKNINSTLVFDAMLIKMQ 312 >UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHB4_BREBN Length = 326 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 136/349 (38%), Gaps = 29/349 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ Q L++ L R+ HAYL +G +G GK +A LAK L C A Sbjct: 1 MTWTRFSQQPRAQELLSHSLRNERLAHAYLLAGPKGSGKKQMALHLAKSLFCSERE-ADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR I+ G D++ I K++ R L + KVY+I+ V + Sbjct: 60 CGACVTCRRIDGGNHPDVLFITPDGASIKIDQIRSLQKEMAMRAVESSRKVYIIEHVDKM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP V LL T + TILSRC L E I +L Sbjct: 120 TTQAANSLLKFLEEPPAGVLALLLTEHSHAILPTILSRCQIVQFSPLSAESIAEKLR--- 176 Query: 192 NEEHIAHEPRALQLLARAAEG---SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 L +A+ A ++ +A++L+ + + Q V + Sbjct: 177 -------AEGVLAGMAQVASHITTNVEEAMTLSQSESFAQLRNLVIQLVQE-CKQRNSSA 228 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L++ + + +++ E L ++ L I +Q+ A + Sbjct: 229 LLTIHDMLQKSD------------KSKEELPLFLDLLILWLRDILYLQVGRHAHL-INSD 275 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + ++ A ++ ++ + + + ++ +E +L+ Sbjct: 276 QQDVLQGQALVWTKAELLRGIDLVMETKNRIERNANAQLALERLVLQFQ 324 >UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EG83_PARTE Length = 384 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 136/349 (38%), Gaps = 41/349 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + K+RP+T +V G ++ L +G + + + G G+GKTS LA+ Sbjct: 3 NNLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPN-IILVGPPGIGKTSSVLCLARQ 61 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP---ARG 118 + ++ + ++E++A+ +E R+ + G Sbjct: 62 ILGDSIKES-------------------VLELNASDDRGIETVREQIKGFAQKKVNLQEG 102 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + K+ ++DE L+ + AL + + +F+L+ D KL I SRC L Sbjct: 103 QHKIVILDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRL 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++IR +L I+++E + + L L AEG +R A++ QA +G G V+ + V Sbjct: 163 GEKEIRDRLLEIISQESVTYTKDGLDALTFTAEGDMRQAINNL-QATFTGFGLVNRENVF 221 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL-------------VEM 285 + + D +++ M++ + +L+ G + ++ Sbjct: 222 KVCDVPNVDDLKKILDHMLKGEFQPAQSLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDL 281 Query: 286 L-GLLHRIAMVQL---SPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 L +IA ++ A I +M + + + I Sbjct: 282 QFEFLRQIAFLKARILEGIADVLIDVWIHCQMLQYIQKLSQQMIIQMLN 330 >UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CVS5_CRYPV Length = 335 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 123/303 (40%), Gaps = 33/303 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + K+RP D+ + V++ L++ L G + H LF G G GKTS L++ Sbjct: 4 MSSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPH-LLFHGPPGTGKTSAVLALSR 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR- 119 L ++E++A+ + RD + + + Sbjct: 63 ELFGPNEYKNR------------------ILELNASDERGISVVRDKIKSWTRQVVQCNK 104 Query: 120 -----------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E ++ +F++ K+ + S Sbjct: 105 THEITGNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLAS 164 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IA 226 RC +F + + +L++I ++E +++E L+ + ++G LR +++ A + Sbjct: 165 RCAKFRFQPISANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELF 224 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 D ++S ++ + G ++ + E ++ + G E + + Sbjct: 225 GKDKRISMSSILDVSGVPPIKIIERIINSCKILGVESILIETAKLINEGWSVELIFKGLA 284 Query: 287 GLL 289 + Sbjct: 285 EFI 287 >UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacillaceae RepID=B1HS71_LYSSC Length = 334 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 129/347 (37%), Gaps = 28/347 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V Q V+ L R+ HAY+F G +G GK I K + CE PC C Sbjct: 9 FVLQPVVMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEHPNENVPCETCR 68 Query: 78 NCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 NCR ++ G ++ +I + K++ R+L+ ++ K+Y++ L+ S Sbjct: 69 NCRRVDSGNHPNIHQIYPEGQFIKIDQMRELIGEMKMMGVEEGRKIYVLHHADRLNTASA 128 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N +LK LEEP V +L T Q + TI SRC + + + L+ Sbjct: 129 NMILKFLEEPDGEVTAILITEQMQSILPTIRSRCQHIKFQKMPRHVLLQHLQ------GN 182 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 ++ L A+SL + + L LVEA+ Sbjct: 183 NISHSMASTVSMMTN-ELEMAISLASDEQFALARK----------------TVLKLVEAI 225 Query: 257 VEANGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + E ++ + E E E L +L I ++ +P A + Sbjct: 226 RQNVHEAMLIVHEEWLPHFKEKSEMEQALDLLLFAYRDIVSIKANPEAAC-TYPDMLPLF 284 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +E+A + +++L R L +R + +E +L + Sbjct: 285 KEIALYSTYEQLSKQMESILQARASLQRNMNRTLLMEQLMLNLQEGY 331 >UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY72_9BACT Length = 381 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/385 (18%), Positives = 125/385 (32%), Gaps = 66/385 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQ + L G+ GR+ HA LF+G G G +A + LNC Sbjct: 1 MRFSEVIGQRELKRHLVRGVDAGRVSHAQLFTGRPGAGALPLALAYVQYLNCTNRRDGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---------------------------------- 98 CG C NCR+I DL + ++ Sbjct: 61 CGECPNCRQIAGLAHPDLHFVFPVNKQGKKSGEAVLSDDFMPLWRQVVSERNGYFSPQEW 120 Query: 99 -------------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + ++ + + ++K ++ ++ + N +LK LEE Sbjct: 121 YDRLDLGRTLKGAISAREADGIIRKLSFKSFAAKYKCVIVWLPETMNEEAANKILKILEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P E F+L + P L TILSR + + L E++R +LE +P ++ Sbjct: 181 PWEKTLFVLVSERPDLLLPTILSRTQEVVVPRLTDEEVRAELERRGER-----DPEKIRT 235 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 R A G L + + ++ D + SL+ +M Sbjct: 236 FTRLAAGD----LIELEHLLRGEGDELRKD---------DFEFFCSLMRLSYNDKHLELM 282 Query: 266 ALINEAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 A E A E + L + LL ++ + R A I + Sbjct: 283 AWAEEVAQLSREQQRAFLTNAVRLLRESYLLHAGLGEISCLWGEEAKFCRNFAPFIGNQN 342 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGV 349 I+ ++ + + Sbjct: 343 IESLVAEAESAMAQIRQNGNPTIVF 367 >UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZK45_PLALI Length = 365 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 140/369 (37%), Gaps = 39/369 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATP 72 +++V GQ + L + GR+ H YLF G +GVGK +A+ A+ + C+ Sbjct: 4 WSEVRGQSMAIEQLRKAVERGRLAHGYLFVGPQGVGKRLVAQKFAQAILCKERKPHELEA 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDT---------RDLLDNVQYAPARGRF 120 CG C +CR G D ++ ++ L + P G Sbjct: 64 CGTCTSCRPFLAGNHPDFQVVECPEGKREIPIDLLVGSKENRGQEGLCHGLSLKPLSGSR 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +ID+ H+L+ NA+LKTLEEPPE +L + + + TI SRC + L Sbjct: 124 KIAIIDDAHLLNDAGANAILKTLEEPPELAVLILVASTLETVLPTIRSRCHLVRFQQLGY 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV-SA 239 E I L E + E ++ +++ +GSL A + D A+ + Sbjct: 184 EDIEALLS----AEG-SIETGMVKEVSQMCDGSLSMAKEMLDPALWELRKTLRKTLCERR 238 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G S +E+ +E +A+ + + ++ L R+ V Sbjct: 239 IPGQKTAQMIFSYLES-----------HSSETSAQRESIQHIFRFVIDDLRRVIQVVCGA 287 Query: 300 AALGNDMA---AIELRMRELARTIP--PTDIQ---LYYQTLLIGRKELPYAPDRRMGVEM 351 + + + ++A+++ P I+ ++ ++ + + +E Sbjct: 288 ETREQNHSLVRDSHNEIVQMAKSLSPDPETIECFAKMCDRVMEASGQVLQNVNLSLCLEA 347 Query: 352 TLLRALAFH 360 Sbjct: 348 CFDDVSRMR 356 >UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bacteria RepID=B8HT26_CYAP4 Length = 1232 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 131/346 (37%), Gaps = 3/346 (0%) Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + + + Sbjct: 704 HNCHMLSGSAFNALLKTLEEPPKRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLTDMVQ 763 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I +E I AL L+A+ A+G LRDA ++ DGQ++ + V + G + Sbjct: 764 HLSTIAEKEGIDIATDALTLVAQIAQGGLRDA-ESLLDQLSLLDGQITIERVWDLAGAVP 822 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN- 304 + L L++A+ + E + RG E +L + + + + +P Sbjct: 823 EQDLLKLLQAIATDSAEATLDQARYLMERGREPLVVLQNLASFYRDLLIAKTAPQRHDLV 882 Query: 305 -DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + A+ T I Q L ++ R+ +E+ LL L + Sbjct: 883 AITLSTWEELCTFAQNWETTAILAGQQHLRTCEAQVKNTTQPRLWLEVALLGLLPTYLTA 942 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + P + + P P T V + Sbjct: 943 VRANVDQGTSAIGPPPTRQTVARSPQPTVQPVPTPPPPQPEPLTPTPPVPPPSPRPVSPP 1002 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A + + P + + + + Q Sbjct: 1003 PAAEPSPAPPVQTEKTELQPSVPVSPHGDLDSLWQKVINQVQPTST 1048 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 7/165 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQ + T L N ++ +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQKFADLVGQAAIATTLTNAINQEKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I QG +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLQSEKPTPYPCGKCEACRTIAQGVALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHS---FNALLKTLEEPPEHVKFLLATTDPQ 160 R+KVY+IDE L+ S L +++P K +L+ D Sbjct: 121 RYKVYVIDEC--LTGDSLILTREGLVRIDDPAIKGKQVLSYNDLS 163 >UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa RepID=RFC4_MOUSE Length = 364 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 130/351 (37%), Gaps = 37/351 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V Q+ V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 121 ------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +VS Sbjct: 199 FKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVS 258 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 ++ + G + + A + +++ A++ G +++ LH Sbjct: 259 EDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEG----HAATQLVNQLHDAI 314 Query: 294 MVQLSPAALGNDMAAIELRMRELARTI--PPTDIQLYYQTLLIGRKELPYA 342 + + + I ++ E+ + + + ++L Sbjct: 315 I--ENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQQLTQN 363 >UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSI2_ENCCU Length = 305 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 29/290 (10%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+RP + +VVG V+++L + S GRI + LF G G GKT+ R +A L Sbjct: 2 HQQLTEKYRPGSLLEVVGNREVVSSLQSISSAGRIPN-MLFYGPPGTGKTTSIRAIANNL 60 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 + ++E++A+ + R+ + + K+ Sbjct: 61 PRTS-----------------------VLELNASDERGIATVRETIKEFA-STYSKTMKL 96 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE M+SR + NAL + +E+ + +F L +K+ ILSRC +F + + Sbjct: 97 VILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE 156 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +++E I E I + P ++ ++R + G +R A++ Q I++ GQV V G Sbjct: 157 --NRIEEICKRESIKYTPEGIKAVSRISMGDMRKAVNDI-QGISASLGQVDESNVRRFNG 213 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHR 291 L + + + ++ +ALL + L+ Sbjct: 214 IAPSSVYEELFRNLGSMGMPELRVELERLRYEYSMDCDALLGNLGELVRE 263 >UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03SS1_LACBA Length = 337 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 122/337 (36%), Gaps = 28/337 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++T L + R+ HAYLF+G G G+ +A+ +A L C+ PCG C CR Sbjct: 14 QPQLVTHLMTLIKTKRLAHAYLFNGADGTGRQQVAQTVAMRLFCQNVTDNLPCGQCSECR 73 Query: 81 EIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D + + R KV+ R L + G K++++D+V ++ + N+L Sbjct: 74 RILAGDHPDVVSVVPDGQRIKVDQVRYLKAEFTKSAVEGNQKIFIVDQVERMTTGAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP + LL T + + TILSR + + + L I Sbjct: 134 LKFIEEPVGNTVALLLTANKNLILPTILSRTQIVDFLRVAPQALLTALADA----GITP- 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 S R L+ +++ + V + A Sbjct: 189 -------------SQRYLLTTLTESVTAAQDLVVDDWLKDA-----QQAVGQWFSACCTG 230 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRE 315 + + + E + + LL ++ H Q + A + ++ Sbjct: 231 DERAFVRVQTELVPLALNRDRQGVLLDMVVQAWHDALRQQNATLEAASLAFPKVAQASQQ 290 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 +A+ + + L R +L + + +E Sbjct: 291 VAQRLSIDQLVRVMTLTLATRGQLAGNLNFQAILEAL 327 >UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnobacterium sp. AT7 RepID=A8U6Y2_9LACT Length = 328 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 131/341 (38%), Gaps = 28/341 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + ++ HAYLF G G GK ++ LA L C+ G PC C NCR Sbjct: 11 QPVLVKQFTKTVQQKQLAHAYLFEGISGTGKKEMSLWLAASLLCQDGEANLPCEKCQNCR 70 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 + + + D+IEI KVE R+L + K+++I++V ++ + N+L Sbjct: 71 RVFEHQHPDVIEIIPDGLSIKVEQVRNLKAEFSKSGVESHQKIFIIEDVEKMTTGAANSL 130 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP L TT Q++ TILSRC H +AL +++ +L E Sbjct: 131 LKFLEEPEGSAVAFLLTTAKQRILPTILSRCQLVHFQALTKKKLMAEL------ETKGLS 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 LL + S+ +AL + +++ + Sbjct: 185 INQASLLVQLTN-SVEEALEMNGDEWFQEAKKIT----------------WKWFTLITSK 227 Query: 260 NGERVMALINEAAARGIE---WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + + + + + LL +L + M+ A + + + Sbjct: 228 DSQSFIYVQTTIMPHFKDRDAHRRLLDLILLAYRDVLMIHY-HTLDVLAYARYQKELDHI 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 I + +L+ RK+L + + E +L+ + Sbjct: 287 KTEYTGKAIIQAIEDVLLSRKKLESNVNAQGVFEQLVLQLM 327 >UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH Length = 634 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 2/185 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++K+RP F +++GQ V+ +L N + RI YLF G RG GKTS AR+ + LN Sbjct: 449 RSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALN 508 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ--YAPARGRFK 121 C PCG C C + G+ D E+D A++ + R LL N+ +K Sbjct: 509 CVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYK 568 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ + LK LE P + V F+ TTD + +P TI SR + Sbjct: 569 VFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRLACVGPDCYERG 628 Query: 182 QIRHQ 186 + + Sbjct: 629 WLTSR 633 >UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIX9_ACIFE Length = 356 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 134/362 (37%), Gaps = 36/362 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L+ R + LF G G+GK +AR A+ C PC Sbjct: 13 WESIIGHETNKIFLKNMLTGERQTPSLLFCGPEGIGKKKMARAFARSFLCLEDP-LVPC- 70 Query: 75 VCDNCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +C+ ++ G D I+++ + V+ L + P FKV LIDE H + Sbjct: 71 HCRSCQAMDNGSHQDFIQVEPGGKSRTIGVDAIHQLAASAALGPVLSPFKVCLIDEAHTM 130 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP++ F+L D +KL TI SR ++ L +E LE I Sbjct: 131 REEAQNSLLKLLEEPPDYWLFILVADDREKLLPTIRSRVMELRFDPLSMEDTERVLETIR 190 Query: 192 NEEHIAHE--------------PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +E+ E L +LAR A GS AL + ++ Sbjct: 191 LQENDRPESLKDAELSQAEARWREQLPILARLAGGSAGKALEWFRLDALTLREEI----- 245 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++ + L + + E L+ +L L +++ Sbjct: 246 LDLVEQAGREDILVYADGLP-----------WMLKNDRQESLVLMELLLLLFRDGLILE- 293 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + R+ ++ + R+ + RRM VE L Sbjct: 294 TGLSQPLYNEDLRQRLAMCFAGWTEGMLRKGLELEEKCRRAIASFVTRRMAVEALALEIH 353 Query: 358 AF 359 Sbjct: 354 QM 355 >UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporoblastina RepID=RFC4_ENCCU Length = 309 Score = 179 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 27/286 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K++P D+VG E + ++ + + H LF+G G GKT+ A++LA+ L Sbjct: 4 LVNKYQPSEIQDIVGNEATMELVSLMIESRDMPH-LLFTGPPGTGKTTCAKILARRLL-- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYL 124 G L+E++A+ ++ R + Q FK+ + Sbjct: 61 -------------------GNKEGLLELNASDERGIDTVRTTIKSFAQRRVKDCEFKIII 101 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + A+ + +E +F+L K+ I SRC ++ I Sbjct: 102 LDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVIL 161 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L+ I E I AL L+ ++G +R +L++ QA + G V + ++G Sbjct: 162 KRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNIL-QACINSPGTVDQDYIIKIIGLP 220 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 + +++ +++ E + + +E + L+ Sbjct: 221 SPKRIEKVLQRLLKREVEEALEMFDEIWEEKFDPLDLIN---SFFR 263 >UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacillus cereus group RepID=B7IZB6_BACC2 Length = 326 Score = 179 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 122/340 (35%), Gaps = 28/340 (8%) Query: 13 QTFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 T+ ++ Q V L N + + HAY++ G +G+GK +A L AK L C G + Sbjct: 1 MTWNELQDVQPKVARILQNSIRKEMVAHAYIYEGNKGIGKYQVALLYAKTLLCNNGSNSE 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC C NC I+ G D+I I K E +L YA K+Y+I+ Sbjct: 61 PCHACKNCTRIDTGNHPDIIYIKPDGASIKKEQIEELQKEFSYASFESGKKIYIIENAEK 120 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ ++ N+LLK LEEP +L T L TI+SRC + ++++ L Sbjct: 121 MTTNAANSLLKFLEEPESDCIAILLTERSNALLSTIISRCQLIRFAPISPKKVQEALT-- 178 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + A ++L++ + +QA ++S + LG D Sbjct: 179 ---EQLIFGEEA-KILSKLT--------NDLEQA-----RKISEELT---LG-PKLDLIQ 217 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + ++EA A ++ L+ I Sbjct: 218 EFIQKCNTLKVYALKKELSEAFAGKEGTLIFYHIVMLWFEDFLNYHLNRRNDLVFNEEI- 276 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + + I + + + + Sbjct: 277 --LDTEVKKYKLNQILHLIKCAQKYQGRVHNNLTFTTLFD 314 >UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces elongisporus RepID=A5E7K0_LODEL Length = 402 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 70/385 (18%), Positives = 137/385 (35%), Gaps = 85/385 (22%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + K+RP+ DV Q+H + L +S G + H LF G G GKTS LAK L Sbjct: 34 HTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPH-MLFYGPPGTGKTSTILALAKQL 92 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--- 119 + ++E++A+ + R + N Sbjct: 93 YGPNLYKSR------------------VLELNASDERGISIVRQKIKNFAKLTVSNPTED 134 Query: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 135 DLRNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRC 194 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE-----PRALQLLARAAEGSLRDALSLTDQAI 225 +F K L+ E ++L++I EE++ + L + R + G +R A++ A Sbjct: 195 SKFRFKLLNNENSLNRLKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSAS 254 Query: 226 ASGD--------------------------------------GQVSTQAVSAMLGTLDDD 247 G ++ ++ G L D Sbjct: 255 KLSSSLQLENCKNDMNEDNKGESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDT 314 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-----------HRIAMVQ 296 L +VE++ + N ++ L+N+ + G + L+ ++ L ++IA+ Sbjct: 315 LILQMVESIKQKNEGILINLVNDIISSGWSVQQLIDQLHDQLVWDDTIDSLKKNQIALTL 374 Query: 297 LSPAALGNDMAAIELRMRELARTIP 321 N +++ L + Sbjct: 375 FDTDKKLNLGTDEHIQLLNLVLQVS 399 >UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5DDN5_LACTC Length = 356 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 120/302 (39%), Gaps = 35/302 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ DV Q+H + L L + H LF G G GKTS L K L Sbjct: 24 KPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPH-MLFYGPPGTGKTSTILALTKELY 82 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----APARGR 119 + + ++E++A+ + RD + + P++ Sbjct: 83 GPALMKSR------------------VLELNASDERGIAIVRDKIKSFARLTVSKPSQND 124 Query: 120 --------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 125 REKYPCPPYKIIILDEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCS 184 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ----AIAS 227 +F K LD +++++ EE + ++ L+ + ++G LR A+ L Sbjct: 185 KFRFKPLDSSNALSRVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHL 244 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 Q++ V + GT+ + LV + AN E + + E G +++ ++ Sbjct: 245 DPPQITALTVDELAGTVPTELLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHH 304 Query: 288 LL 289 Sbjct: 305 YY 306 >UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HYF2_9SPHI Length = 379 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/385 (17%), Positives = 133/385 (34%), Gaps = 70/385 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G L + + + HA LF G G +A L+ L C+ Sbjct: 1 MRFADIPGLPETKKNLISAVKNNHLAHALLFHGPEGSANLPMALALSTYLFCQNPGEEDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS----------------------------------- 97 CG C C+ +E+ DL + Sbjct: 61 CGECSYCKRMEKLIVPDLNFAFPSISKEKKDSESEDEKNHELANFRNFVLENPYGNIHDF 120 Query: 98 -----------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 + ++ ++ G +K+ LI V L + N+LLK +EEP Sbjct: 121 IYYSGFEKKQLNISKNAAKRIIQSLSLMSFEGGYKIMLIWGVEYLHPSAANSLLKIIEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P F+L T+ P +L TILSR + ++ E+I L + E + + + + + Sbjct: 181 PAKTVFMLITSQPDQLLTTILSRTQKVLIRGFSDEEIVSHL---VGSE--SCDQKTAEQV 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 + A+G+LR+A L ++ D Q+S + L + + + Sbjct: 236 SMLADGNLREANRLINKV---EDEQIS--------------KVRRLFLSCYTKKFKDIFN 278 Query: 267 LINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTD 324 +E E ++ ++ L +L + + L + + ++++T + Sbjct: 279 FADEFQKYDKEAQKSFMLSGLNVLREVMLKNADLNELLRTTGSDREFIDKISKTVLDENH 338 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGV 349 + Y T L + ++ Sbjct: 339 VMKLYNTFNQAHYHLERNGNAKLIF 363 >UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WSU8_LACS1 Length = 330 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 132/342 (38%), Gaps = 22/342 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + A + ++ HAYL SG G GK +A+ +AKG+ C PC C C Sbjct: 9 QPFLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECN 68 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE D++ I KVE R L + KV++I + +S + N+L Sbjct: 69 RIENNNHPDVVTIMPDGLSIKVEQIRYLKSEFNKSGVESDRKVFIIQDAQKMSIGAANSL 128 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP ++ L T++PQKL TI+SRC + ++ L Q LE L E I+ + Sbjct: 129 LKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLTSGQ----LEQELISEGISEK 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 +LA A+ S+ +A + D + L D L+ ++ Sbjct: 185 NS--HILANLAQ-SVVEAKKINDNE-NFNKILATVNNWYRKLLRKD------LLSFVM-- 232 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + + I + +L ++ + +++ +++ Sbjct: 233 ----IQSKIIGLIQNKEDQNLVLQVIILTVRD-TVLERFGLTEEIVFKENIDFIQQNTAQ 287 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 I + + ++ ++L + +E L + Sbjct: 288 IANSKLVNGLNLVVESNRKLASNISMQNMLETLTLNLFDCYF 329 >UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QU04_CHLT3 Length = 389 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 161/399 (40%), Gaps = 65/399 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---T 69 + + GQE ++ L + R+ +A+LF+G GVGK ++A LAK LNC++ T Sbjct: 1 MAWERINGQERQISVLRRAIKTNRLPNAFLFTGPEGVGKEAVAIELAKVLNCDSPNALLT 60 Query: 70 ATPCGVCDNCREIEQGRFVDLIE------------------------------------- 92 A C C++C++I + +L Sbjct: 61 AEACEKCESCKKISALKHPNLEFIFPVEKILLEKTSETGADRAKQEDALERMKALLEEKR 120 Query: 93 --------IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 +D A + L + Y P G+ +V+++ + ++ S N LLK LE Sbjct: 121 RNPYHSLRMDKAMGILKDQILLLQEKAAYKPLAGKKRVFILSQAESMNEASANKLLKLLE 180 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP +V F+L ++ P+ L TI+SRC L E+IR LE + + E A + Sbjct: 181 EPPPYVLFILVSSQPEMLLPTIVSRCQPLRFSKLRPEEIREFLER----QSFSLEADAER 236 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN-GER 263 +A + G+L + + Q++ + + D+AL L+ ++ + G Sbjct: 237 FIASFSRGNLNHVVQMAFQSVENREKPEL---------QRTRDEALQLLRMLLSRDRGHE 287 Query: 264 VMALINEAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 V+ + + + R E +L+ ML + + Q +P G A IE + + A+ Sbjct: 288 VIRQVEQFSKRDKTRDEQRQILLAMLRIFQDVVRKQNAPNETGLVNADIETAISKFAQNF 347 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 P D + + ++ + + ++ F Sbjct: 348 PDADFESAVKETESAIYKIGRNANPFLTFSALCIKLKTF 386 >UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0EV71_ENTDI Length = 315 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 125/295 (42%), Gaps = 27/295 (9%) Query: 1 MS---YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS K+RP+ +++G ++ L + + H L G G+GKT+ Sbjct: 1 MSKIQAIPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPH-LLLCGQPGIGKTTSIHC 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LA L + A ++E++A+ +E R + + Sbjct: 60 LAHELLKDRYKEA-------------------VLELNASDERGIETIRSTIKSFCEKKLV 100 Query: 118 GR---FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ +F AL +T+E + +F+LA P+K+ I SRC + Sbjct: 101 LPDNLPKIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLT 160 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + L E++ ++++ I E++ E A++ L +EG +R A++ Q A G+++ Sbjct: 161 FRPLGEEELMNRIKEIARCENVDIEDDAVKALEIVSEGDMRKAINAL-QTCAIIQGRITK 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + V D + ++ ++ + + + I + G + ++ ++ + Sbjct: 220 EQVYQRNDLPSADNIIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDIMDMIVRMF 274 >UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=1 Tax=Brugia malayi RepID=A8P0Z2_BRUMA Length = 315 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 115/300 (38%), Gaps = 29/300 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V Q V++ L L + + LF G G GKTS A L + L Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPN-LLFYGPPGTGKTSAAIALCRQLF 79 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 T ++E++A+ + R+ + Sbjct: 80 RNTDTYRD-----------------RVMEMNASDERGINIVRNKIKEFARRAVSSHLPDG 122 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 KV ++DE ++ + AL +T+E +F L ++ + SRC +F Sbjct: 123 SPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFR 182 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K++ E +L+ I E+I +P A+ L +G +R +++ Q I+S ++ Sbjct: 183 FKSISSESQEKRLKWICQNENIEFDPLAISELIELCDGDMRKSVTAL-QTISSCHKKLIP 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI-EWEALLVEMLGLLHRIA 293 V LG + DD V + N ++ A I G E E +++ ++ Sbjct: 242 ADVRQFLGAVPDDVVQQFVASCRSRNHNQLYACIENIRREGYGECEMRILDGANEFLQLL 301 >UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root RepID=RFCS_METBF Length = 334 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/357 (19%), Positives = 140/357 (39%), Gaps = 41/357 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++ K+RP V GQE + L + ++ + H LFSG GVGKT+ A +A+ + Sbjct: 9 EIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPH-LLFSGPPGVGKTASAVSIAREIF 67 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARG-RFK 121 E + E++A+ ++ R + + + AP G FK Sbjct: 68 GEDLWRE------------------NFTELNASDERGIDVVRTKIKNFAKTAPMGGAEFK 109 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE L+ + +AL +T+E + +F+L+ ++ I SRC F + L E Sbjct: 110 IIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDE 169 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 IR +LE+I ++ ++ + L ++G +R A++ A + +S + Sbjct: 170 AIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRT 229 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSP 299 T + + +L+E + N +N G+ E ++ ++ + Sbjct: 230 TATANPEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAI---------- 279 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ RM L + I + L ++ +E L Sbjct: 280 -------SEMDNRMI-LDLGLSEKRIVELVDIIGEIDFRLTEGATEKIQLEALLAHF 328 >UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q8IKK4_PLAF7 Length = 344 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 125/350 (35%), Gaps = 37/350 (10%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP D++ E V++ + + G + H L G G GKTS + K L Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPH-LLLHGPPGTGKTSTILAVCKELYG 72 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF---- 120 + R ++E++A+ + RD + + Sbjct: 73 D-------------------KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKT 113 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DE ++ + NA+ + +E ++V+F L K+ I SRC F L Sbjct: 114 TLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPL 173 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQA 236 E ++++ I E++ + L R G +R L+ Q ++ + Sbjct: 174 KKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCL-QVVSLSHKNLVIDENV 232 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMV 295 + + L + ++E + + + ++ +G + + M+ L + Sbjct: 233 ILSTLDIPLPSETKKILEYFTKGSIKESYEFVSNLQYDKGYSTKDI---MMCLYESVLTY 289 Query: 296 QLSPAA---LGNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIGRKELPY 341 +A L + IE R A I + + + +L Y Sbjct: 290 DFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTELFKLKY 339 >UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable n=2 Tax=Ostreococcus RepID=A4RSQ7_OSTLU Length = 332 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 132/341 (38%), Gaps = 26/341 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP ++VV + ++ + G++ H LF G G GKTS LAK L Sbjct: 13 LPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPH-LLFHGPPGTGKTSTILALAKELY 71 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ--YAPARGRFK 121 ++E++A+ + RD + + P FK Sbjct: 72 G-------------------LNFSNMVLELNASDARGINVVRDEIQSFASTMRPFSTTFK 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE +++ + AL + +E+ +H +F L K+ + SRC +F + Sbjct: 113 LVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASG 172 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +L HI+N E+ + +L + + EG +R +++ Q+++ V+ A+ + Sbjct: 173 DMLQRLRHIVNSENFSISDNSLATIQKLGEGDMRKTVNIL-QSVSLSASVVTDDAIHLIT 231 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + Q L+ ++ + N + ++ + L + M + A Sbjct: 232 GHVGQLQVDELLRFLLNEPLQGTFEHFNRLKCTQNFALVDIVKPLSESLLTLHMAAGTRA 291 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 L ++ IE + A + + R E+ Sbjct: 292 RLLRGLSDIEYSL-SFACSEKNQTLY-LISLFHQARFEMTR 330 >UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacteroides RepID=D1JX33_9BACE Length = 369 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 130/376 (34%), Gaps = 59/376 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F DV+GQE L +S GRI HA LF G GVGK +A A+ L+C Sbjct: 1 MFFRDVIGQEEAKYRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTK-----VEDTRDLL------------------- 108 CGVC +C + + D+ + + + + R L+ Sbjct: 61 CGVCPSCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAEN 120 Query: 109 --------------DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 + + G FK+ L+ + + N LLK LEEPPE FLL Sbjct: 121 AQAVIYTKESDEIMKKLSLKSSEGGFKITLLWLPEKMQQACANKLLKLLEEPPEKTIFLL 180 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + P + TILSR +F+L+ ++ E + L+ + +A A G+ Sbjct: 181 VSEAPDLILQTILSRTQRFNLRKIEEECMAEALQS-----KYGVQQATSISIAHLANGNF 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A + + + Q+ + +SL+ + + + A Sbjct: 236 IKA---LETIHLNEENQLFFEL------------FVSLMRLSYQRKIREMKLWSEQVAGM 280 Query: 275 GIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G E + L ++ + L L + A + ++ L Sbjct: 281 GRERQKNFLEYCQRMIRENFIYNLHRKELTYMTLEEQNFATRFAPFVNERNVMGIMDELS 340 Query: 334 IGRKELPYAPDRRMGV 349 +K + + +M Sbjct: 341 EAQKHIEQNVNAKMVF 356 >UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK33_ENTBH Length = 298 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 126/290 (43%), Gaps = 34/290 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+L K+RP+T DV+G E ++ + N H LF G G GKT+++++L++ Sbjct: 3 QLLTEKYRPKTLDDVIGNEVIIKLIKNL--DNTFPH-LLFCGPPGTGKTTVSKILSQ--- 56 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 +F ++E++A+ ++ R+ + + K+ Sbjct: 57 ----------------------KFSKVLELNASDERGIDTIRNRIKTFTQLAEQS--KLV 92 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE L+ + AL + +E ++VKF+L K+ I SR + + + Sbjct: 93 IMDECDSLTLVAQQALRRLME--VKNVKFILICNMINKIIEPIQSRTAILKFEKIPINSF 150 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQAVSAML 241 H L +I N+E I P + L ++G R+ L++ +++ + + + ++ Sbjct: 151 LHLLTNICNKEKILLTPSGIDALIDLSQGDFRNCLNILQGICNVSNDNFNIDDNFLYSIN 210 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 G + Q L ++ ++ N E ++ + + ++ ++ + ++ Sbjct: 211 GIPNKKQLLKIINSIKNKNEEELIVNSEKLFSHKYDYSDIMNGLFKIIKD 260 >UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus RepID=C0WUL6_LACBU Length = 336 Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 111/335 (33%), Gaps = 28/335 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + + HAYLF+G G G+ ++A +A L C PCG C C Sbjct: 13 QPKLFEQFMRLVDRNELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKCAECT 72 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ KV+ R + + G KV++I + ++ + N+L Sbjct: 73 RIMNHDHPDVVITKPDGLSIKVDQIRHVKSEFTKSAMEGSKKVFIISDADKMTTGAANSL 132 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V L + + + TI+SR ++ + + +L Sbjct: 133 LKFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKS------GIL 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P + LL S + + L + +V+ Sbjct: 187 PSQINLLMSMTN-------------SLSEIKRWQADNWFSSL----QEVVSKWFGYLVKG 229 Query: 260 NGERVMAL---INEAAARGIEWEALLVEMLGLLHRIA-MVQLSPAALGNDMAAIELRMRE 315 N + + + + L M+G+ + + I ++ Sbjct: 230 NLMAMPYIQMALMPLITNKERQQVALSMMIGVFDETLEIKYGTLKKDTTKFPDIISETKQ 289 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 A+ + + LL R L + + +E Sbjct: 290 AAQEWSSDQLMTMLEELLNTRGSLMVNVNFQNVIE 324 >UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=Anaeromyxobacter RepID=Q2IQK6_ANADE Length = 370 Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 152/374 (40%), Gaps = 40/374 (10%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P F++++ QE + +L + L G +HHAYLF G G GK A LLA+ NCE G Sbjct: 7 PMPFSELIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAALLLAQAANCEGGQAGP 66 Query: 71 -----TPCGVCDNCREIEQGRFVDLIE------------------IDAASRTKVEDTRDL 107 PCG C CR+IE+G D++ + V+ RDL Sbjct: 67 GGLREDPCGACGPCRKIERGLHPDVVVLAEERTMAKAGRWEPKSGRAPSKDIVVDQVRDL 126 Query: 108 LD-NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 +D + GR + +ID ++ + NALLKTLEEPPE +L + P L TI Sbjct: 127 VDHRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDALLPTI 186 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRCL+ + L + + +L+ E + E ++ A + GSL A A A Sbjct: 187 RSRCLRVSFRPLPADAVAARLQE----EGVPAEE--ARVAAALSGGSLGRAR-----AHA 235 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIE-WEALLVE 284 + +AV+ DD L A + + + A E + Sbjct: 236 GDAARRPLRAVAQAAALRPDDAGAWLAWAADPGADPAQARGKDRDRKAEVKELAPEICEL 295 Query: 285 MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 ML L + VQ +A +E R A +PP ++ +L + L Sbjct: 296 MLVWLRDVLAVQAGAGR--LAVADLEPVTRRAAAALPPGEVVRRRGEVLRTLRALRQNAT 353 Query: 345 RRMGVEMTLLRALA 358 ++ +E ++ Sbjct: 354 SQLALERLMIGWFH 367 >UniRef50_Q5UP47 Putative replication factor C small subunit L499 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS3_MIMIV Length = 344 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 125/336 (37%), Gaps = 44/336 (13%) Query: 1 MSY-------------QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTR 47 MSY K+RPQ ++ ++ +L + + H LF G Sbjct: 1 MSYYETIASRTEPKKQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPH-LLFFGPS 59 Query: 48 GVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 107 G GKTS + A+ + + ++E++A++ +E R Sbjct: 60 GSGKTSTIKCCAREIYGKY-------------------INYMILELNASNERGIETVRTK 100 Query: 108 LDNVQYA--------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 + N + R FK+ ++DE+ ++ + L +T+E+ +F L D Sbjct: 101 IKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDI 160 Query: 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 K+ + + SRC F L+ + +L I E + +E A+ + + ++G +R A++ Sbjct: 161 DKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAIN 220 Query: 220 LTDQAIASGDGQVSTQAVSAMLGTLDDD---QALSLVEAMVEANGERVMALINEAAARGI 276 G ++T+ V + G + ++ ++ + + + +N+ Sbjct: 221 TLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVT 280 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 E + +L L I M + + + Sbjct: 281 ENNITIFNLLEELKNIVMESKFTTSQKIFLIDNFAK 316 >UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNA5_ESV1 Length = 326 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 35/300 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+ DVV +H+ L G + H LF G G GKTS LA+ L Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPH-LLFHGPPGTGKTSTILALARTLL 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 E + ++E++A+ ++ RD + Sbjct: 61 GEGNMRER------------------VLELNASDERGLDVVRDKIKTFSKMSISSFQPGC 102 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 FK+ ++DE ++ + +AL +T+E +F L K+ + SRC +F Sbjct: 103 PPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFST 162 Query: 178 LDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L + ++ +L HI E+I E L + +++ G +R A++L S +V+ Sbjct: 163 LAPKSMKGRLLHICERENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTV--SQQPRVTP 220 Query: 235 QAVSAMLGTLDDDQALSLVEAMVE-----ANGERVMALINEAAARGIEWEALLVEMLGLL 289 +++ + G + + L A+ + E V ++ G +L E+ G + Sbjct: 221 ESIVEIAGEVPERVFDMLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRV 280 >UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=Chloroflexi (class) RepID=A7NRV6_ROSCS Length = 354 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 128/353 (36%), Gaps = 44/353 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + L ++ R+ HAYL G GVGK +A LA+ LNCE PC C Sbjct: 10 MIGHEWAVEFLRRSIAGKRLAHAYLIGGPEGVGKALLALRLAQALNCERS-ALDPCLRCR 68 Query: 78 NCREIEQGRFVDLIEIDAA--------------SRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ IE+G D+ A K++ R+ ++ P GR +V+ Sbjct: 69 ACQRIERGNHPDVRIAGMATQAAGAKSDDAARQKELKIDTVREWQRDMMLKPYEGRRRVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++ + L+ + NA+LKTLEEPP + +L L TI+SRC L+ L Q+ Sbjct: 129 ILHDAEKLNESASNAMLKTLEEPPPYATIVLVAHTVGSLLPTIVSRCQLLRLRPLPRAQV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L E +LLA + G + AL + D + ++ +L Sbjct: 189 AAALR-----EKRNLAAGDAELLAAWSGGRIGWALRMVDTPDELAARR---DQLAELLAL 240 Query: 244 LDDDQALSL------VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 D A L +A + V L + + Sbjct: 241 ADQPLATRLRWAEEQAKAYRAGDQTAVFET--------------LDLWQSWWRDVLL-TA 285 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + + A D+ + + + + L + ++ +E Sbjct: 286 AGCPQAVVHIDRRDELVAAAAQHTVPDLHAFVSGIALAAQRLRDNVNPQLALE 338 >UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LA68_9ALVE Length = 514 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 73/497 (14%), Positives = 158/497 (31%), Gaps = 48/497 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP + +DVVG E + L + + L SG G GKT+ LA+ L Sbjct: 15 LPWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPN-LLLSGPPGCGKTTSVMCLARALL 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARG 118 E + ++E++A+ ++ R+ + + Sbjct: 74 GEDLVKTA------------------VLELNASDDRGIDVVRNRIKTFAQQKISLPAGGC 115 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + K+ ++DE ++ + A+ +T+E +F LA K+ I SRC L Sbjct: 116 QQKIVILDEADSMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRL 175 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I Q++ + + E + L+ L AEG +R AL+ Q+ A+G G V+ + V Sbjct: 176 KDSDIEAQVKKVADMEGVQLRGDGLEALIFTAEGDMRAALNNL-QSTATGFGVVTRENVF 234 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + + V + +++ A+G ++ + ++ + Sbjct: 235 KVCDQPQPGELKQATLDCVNNDWCSAFDRLDKITAQGYSIGDIVGTLERVIRNL------ 288 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + Q + + R + R+ + + + + Sbjct: 289 ------PPEELNEAIK-----------IEFLQAIAMCRLRMSEGLQSRVQLSVYVYMPVL 331 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 PL + E P + A + + + + Sbjct: 332 NALDTPLEKSEEPLEREVIDAELQRLLEAKPAQMSYDEYLKWYVAVKNIQRFYRSPVIEP 391 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 L ++G T+ + + + L+ T A + + Sbjct: 392 LMFIEGFTEEDLEKAVGGSTRQQGVTRELDNKKLPTTSTSWSSSAMATTSGWSSSTVPKQ 451 Query: 479 KATTPVMQQKEVVATPK 495 + V + Sbjct: 452 NPPSTAWSSSTAVTSTW 468 >UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CMJ4_METED Length = 806 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 107/562 (19%), Positives = 193/562 (34%), Gaps = 17/562 (3%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 A +RP TF V GQ+ V+ L+ ++ GRI + L G G GKT++AR+ A+ LNCE Sbjct: 100 FADAYRPHTFKKVFGQDSVVACLSGLIARGRIGRSILLHGAVGSGKTTLARIYARALNCE 159 Query: 66 TG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTK-VEDTRDLLDNVQYAPARGRFKVY 123 A+PC C+ C + + + E + + R ED L ++++ Sbjct: 160 APDPRASPCYACEACGRLGEKPIKEFEEYNVSRRGGGREDVERFLSTHDRPVHGAKYRIL 219 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 DE H L+R + + LL +E P ++F+ ATT+ ++L + SR L ++ L V++ Sbjct: 220 FFDEAHALTREACDLLLLPVESPQHAIRFIFATTEAERLRRALRSRLLDLLIRPLPVDRA 279 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + IAHEP AL LLA EG RD L ++ +++ V A Sbjct: 280 IEFLRQAAEKIGIAHEPGALALLAGLREGYPRDLLLGLERVWERNTPRLTVAQVRAAFDV 339 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-------HRIAMVQ 296 + ++ A+ + + ++ ++ + + + L + R+ + Sbjct: 340 DQTEVLVAYFTALADGDPDQQAEIVFGWQEQATDKIRWIQAFLLHVYHNEILARRLVVDG 399 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV-EMTLLR 355 + A N A I D+ ++ R+ + + P E L Sbjct: 400 VIEAVPENLRAGIVRGFCARLGLADARDLAPFW------RQMMAFWPVPETATDETALGL 453 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L ++ E + PT A + PLP ++V+A Sbjct: 454 RLTLFHQLVNAGVEGEAVAAERARPTDAAAAIAQASTIAEASRGFGPPPLPRPGARVVAD 513 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + S + N A + +A+ + A Sbjct: 514 KAGFLTPADVRRIVNSASFLVQEHGLLFNTAFAITPAALGVSGTASAVAAITAFRDELAA 573 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV-SQLSLPK 534 + V+ A+A A V + Sbjct: 574 QARAWGGGLRAGITVLERDHRGVIGRIVAHLHAPNPLDPADADGARRTEAWVKAWREGAG 633 Query: 535 LVEQVALNAWKEESDNAVCLHL 556 + A+ L Sbjct: 634 RLGGDAVEFAPAPVGERAALRF 655 >UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax=Actinomycetales RepID=C7MQK6_SACVD Length = 406 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 133/405 (32%), Gaps = 73/405 (18%) Query: 13 QTFADVVGQEHVLTALA------------NGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + ++ +VGQE + L+ G + HA+LF+G G G++ AR A Sbjct: 13 RVWSQLVGQEPAVETLSAAAESAAALVSGRTTDPGSMTHAWLFTGPPGSGRSVAARTFAA 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 119 L C CG C C G D+ + V + R L+ P GR Sbjct: 73 ALQCTVDAG---CGRCQGCHTTLAGTHADVKLVVPEGLSISVSEMRALVQAAARRPTTGR 129 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKA 177 +++ +I++ L+ + NALLK +EEPPE FLL + P + +TI SRC +L+ Sbjct: 130 WQIVIIEDADRLTEGASNALLKAVEEPPERTVFLLCAPSDHPDDISITIRSRCRTVNLRT 189 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 E I L E +P + A G + A L + + AV Sbjct: 190 PSPEAIATVLV-----ERDGIDPERARWAASVCGGHVGRARRLATD----ENARARRAAV 240 Query: 238 SAM-LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA---------------- 280 + LG + + ++ + + Sbjct: 241 LRIPLGLRRAEDVFRCADELISTAEADATEVSKARDEAEQDALRTAMGSGGTGKGVAAAK 300 Query: 281 ----------------------------LLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 L+++ G + ++ A N + + Sbjct: 301 RAADAAVRALEKKQKSRATRTQRDTLDLALMDLAGFYRDVLVLSSGSDAALN-HPDVAEQ 359 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 E AR P + +L R + + R+ VE L Sbjct: 360 AAEAAREWTPVSTLRRLEAVLACRDAIAWNVKPRVAVEAMLTTLR 404 >UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Corynebacterineae RepID=C3JWH0_RHOER Length = 405 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 84/405 (20%), Positives = 146/405 (36%), Gaps = 60/405 (14%) Query: 15 FADVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 F +VGQ V +L + R + HA+LF+G G G++ A A L C + Sbjct: 7 FGRLVGQHDVEQSLRDAALSARGDSSGSEMTHAWLFTGPPGSGRSVAALCFAAALQCTSD 66 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C C G D+ I V+ R++++ P GR++V +++ Sbjct: 67 GAPG-CGECHACTTTMGGTHGDVRRIIPDGLSISVKGMREIVNIASRRPTTGRWQVIVVE 125 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + L+ + NALLK +EEPP+ LL TTDP+ + VT+ SRC L VE I Sbjct: 126 DADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTLRSRCRHMPLVTPSVESIA 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT- 243 L +P ++ A + G + A L A + Q S + + +G Sbjct: 186 QVLID-----RDGLDPERARIAASISGGHVGRARRLATDESARDERQRSLRLAADAIGAS 240 Query: 244 LDDDQALSLVEAMVEANGERVMA--------------------------------LINEA 271 A +LV+++ + + A LI + Sbjct: 241 TAYKAAENLVKSIEA-DTKAFYAELKEQELEELKVSLGGGGTGKGTAGTLRGSAGLIKDL 299 Query: 272 AARGIEW---------EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 AR + L+++ G+ L + + + ELA P Sbjct: 300 EARQKSRDTRARRDLLDRTLIDLAGMYRDALSCSL-GSTSTATHPDMARQAAELAARTSP 358 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 + + +L R+ + + + ++ + A Sbjct: 359 EGLLKCIEAVLECREAVDFNVKLQWALDAMVASIGAAFRPPFSRS 403 >UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6L9_CHRVI Length = 359 Score = 175 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 125/338 (36%), Gaps = 34/338 (10%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNCR 80 + + + L + R+ H L SG GVGK ++AR LA+ L C+T CG C +CR Sbjct: 29 DAIWSRLQAARAADRLAHGLLISGPNGVGKRALARALAQSLLCQTPSAQGLACGQCADCR 88 Query: 81 EIEQGRFVDLIE-----IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + G DLIE + ++ R + P+R FKV LID L++ + Sbjct: 89 LLAAGSHPDLIEVGPDPESKSGEIPIDAVRLFAERESLTPSRALFKVVLIDPADRLNQAA 148 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKTLEEP H L +LP TI SRCL + D Q L Sbjct: 149 ANALLKTLEEPTGHTVLCLIGERIGRLPATIRSRCLLIPVPIPDEAQALSWLASRA---- 204 Query: 196 IAHEPRALQLLARAAEGSLRDALSL-TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 L R A G+ AL+ D A GQ + G D Sbjct: 205 ---PRADWPLRLRLAHGAPLRALAEAADSARLEQRGQCLDGLLEIARGRGDPVTIAGRWN 261 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + +L + G++ + + + D + + Sbjct: 262 EIGAG--------------------RILDWLAGIMGDLLRLGVCATPPRLDHPDRQDDLA 301 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 LA+ + P + + +L R ++++ +E Sbjct: 302 ALAQRLDPAAAHRFLKRILETRALGESNLNQQLLLESL 339 >UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C36A8 Length = 338 Score = 175 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 130/348 (37%), Gaps = 20/348 (5%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT 71 ++ + GQ A L GR+ H+YL G GVGK AR LAK CE T Sbjct: 1 MSWDRIRGQHAPRNTFAAALEAGRLAHSYLLVGPDGVGKRQFARELAKAFLCEHPPAKLT 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEV 128 C C C ++ G DL+ + V++ R + P RG K+ ++++ Sbjct: 61 ACDRCPACAQVNVGTHPDLLFLRTPEDKHELPVDEMRAFCAQIALKPTRGPRKIGIVEDA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N+ LKTLEEPP+ LL T + TILSRC L ++ L Sbjct: 121 DDFNASSANSFLKTLEEPPQGALLLLIGTSIDRQLSTILSRCQIVRFAPLSPADLKAVL- 179 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E +P LA+ GS+ AL+L D +I ++ G + Sbjct: 180 ----AEQGIDDPVKRDRLAKLGAGSVTRALALDDDSIWQVRQKLLE-------GLMSPRP 228 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + + E E A + + +L ++ + + L AA+ AA Sbjct: 229 PFQQLADVWARFNEEAGK---ETAPQRLRTSLVLQFLIEAVQNALKLSL-GAAVPELDAA 284 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +R A I + L+ + + VE + + Sbjct: 285 EAPLLRAFADRIGAAGLMELLDALVEADFHVERRVQLILIVESVVTKF 332 >UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Schistosoma mansoni RepID=C4Q6I1_SCHMA Length = 468 Score = 175 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 24/290 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP D+VG E+ + L+ G + + + +G G GKT+ LA+ L Sbjct: 154 PWVEKYRPIELEDIVGNENTICRLSVFARDGNLPN-IIIAGPPGCGKTTSILCLARTLLK 212 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RGRFK 121 A ++E++A++ +E R + GR K Sbjct: 213 SAYKEA-------------------VLELNASNERGIEVVRTKIKMFAQKKVSLPEGRQK 253 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE ++ + AL + +E +F LA D KL I SRC L Sbjct: 254 IIILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTSA 313 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+ +L + E +++ L+ + A+G +R AL+ Q+ G G VS+ V + Sbjct: 314 QVMARLLEVSRFEGVSYTEEGLEAIVFTADGDMRQALNNL-QSTHEGFGMVSSDNVFKVC 372 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 L++ + ++ G E ++ ++ Sbjct: 373 DEPHPMLIKQLIDHCSKGELSAAHKILRHLWTLGYSAEDIITITFRVIKN 422 >UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EC47_9CHLO Length = 355 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 139/331 (41%), Gaps = 30/331 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP +DV + ++ + S R+ + L G G GKTS +AK L Sbjct: 31 QMWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPY-LLLYGPPGTGKTSTILAVAKELY 89 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---RF 120 +E++A+ ++ R+ + G F Sbjct: 90 GPQ-------------------FSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNAGF 130 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE +++ + AL + +E+ +H +F L K+ + SRC +F L Sbjct: 131 KLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGP 190 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ--AIASGDGQVSTQAVS 238 ++ +++ ++ +E++ A+ + R G +R L++ GDG + +V Sbjct: 191 NAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVY 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQL 297 A G + ++ ++ +N + +A + RG+ ++ ++ + R+ M QL Sbjct: 251 ATTGQPRPEDIEAIAGVLLNSNFKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQL 310 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + A L +DMA +E R+ + +QL Sbjct: 311 ARANLVSDMADVEYRL----AYVTHERLQLM 337 >UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XBX7_9BACT Length = 344 Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 82/355 (23%), Positives = 136/355 (38%), Gaps = 22/355 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----- 67 +F D Q+ +T L L GR+ H YLFSG ++AR LAK LNC+ Sbjct: 1 MSFKDFPEQKQPVTLLQRSLERGRLAHGYLFSGHSLGELEALARTLAKTLNCQEPVRLVP 60 Query: 68 --ITATPCGVCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKV 122 C C NCR+I+ D+ + S+++ ++ RDL+ + P +KV Sbjct: 61 GGPAVDCCDKCVNCRKIDAENHADVHWVRPESKSRVVTIDQMRDLMQEINLKPNEAEYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +I L+ + NA LKTLEEPP +L TT+PQK+ TILSRCL+ + + Sbjct: 121 AVIVAADRLNVQAANAFLKTLEEPPAKSILVLLTTEPQKILETILSRCLRLNFAGEGNKA 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L LL R + G++ + A+ Sbjct: 181 LAAAQMEWLRAFSELAAEEQKSLLGRY----------RLLGVLLKTLGELKEEIEKALTA 230 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ L + + E + A I A ++ +L + L + + + Sbjct: 231 RSPLERYDDLDPKLRDRWEEELSAAIE--AEYRLQRADVLGLLQWWLRDVWLRTMPLEGA 288 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++A+ I Q L ++ L + +E+ LL Sbjct: 289 ELLSFPELPTAAQVAKRISSEQAIKNLQVLERMQRLLGSNVQEALALEVGLLELQ 343 >UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM2_9EURY Length = 315 Score = 174 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 127/285 (44%), Gaps = 22/285 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RPQ+F +++GQ+ ++ L I H + SG GVGKT+ A +LAK + Sbjct: 4 WIEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQH-MILSGPPGVGKTTSAVVLAKAVF-- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYL 124 G T + IE++A+ K+ + + + + P FK+ L Sbjct: 61 -GPDWT----------------QNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIIL 103 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 DE L++ + AL + +EE +F+ + + + SRC + L E + Sbjct: 104 FDEADSLTQEAQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVH 163 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 ++ I E + + A+ L + G LR ++L Q++++ ++ +AV G + Sbjct: 164 KFIKRIAESEKLDIDKEAMDALDYVSRGDLRTLVNLM-QSLSNVSKKIDAKAVLQSSGLM 222 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 D + + ++ + + ++ + +E G+ + LL+ + ++ Sbjct: 223 DISKTIDGLKTALSGDFKKSREIFSEIIDNGVNMKELLISIFNVI 267 >UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIR6_HAHCH Length = 335 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 132/352 (37%), Gaps = 45/352 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 +T+ D VG ++ A L +G GVGK + AK L CE Sbjct: 17 KTWRDWVG----------LAHNDKVPSAILVAGQSGVGKNRLTSEYAKFLLCEQAKRLER 66 Query: 72 PCGVCDNCREIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 PCG C +C+ IE G DL D A K++ R L D + P R ++ ++ Sbjct: 67 PCGDCRSCKLIEAGTHPDLQWVAPEDGAKAIKIDQVRGLGDFIYAKPQISRRRICVLTPA 126 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ +S NA+LKTLEEPP V LL + L TI SRC + L A D E + + L Sbjct: 127 EAMNAYSANAILKTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAPDRESVVNWLT 186 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + L +A G AL+ Q I +V ++ + G +D Sbjct: 187 Q------LDVPKERAYSLTESAGGRPLTALAWHSQDILELRAEVLADWLNYLEGRVD--- 237 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 A +L E ++ E L + L ++ G + Sbjct: 238 AFTLAET-----------------WSKLDLERLADWLAIWLKQLLTATQIGEGEG---SE 277 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLLRALA 358 E + + + + Y L+ ++ L + ++ +E LL Sbjct: 278 TEATLAGVGARLDTQQLVSLYAELIEIKRSLVEQRNLNPQLMLESWLLANKR 329 >UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=Pediococcus RepID=Q03E62_PEDPA Length = 338 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 130/339 (38%), Gaps = 23/339 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + + HAYL +G G+GK +A+ +A L C + PCG C+ C Sbjct: 15 QPEIVKRFNEMIDSQHLSHAYLLTGAGGIGKKDVAQWVAMRLFCIDLQGSMPCGECEECT 74 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G+ D++EI + KVE R L + G KV++I++ + ++ + N+L Sbjct: 75 RIMSGQHPDVVEIAPDGQSIKVEQVRFLKSEFSKSGVEGARKVFIIEQANKMTTSAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP V L + + TI+SR LK L + +L L E++IA Sbjct: 135 LKFIEEPSGEVTAFLLAENRSLMLPTIVSRTEIIELKPLP----KDRLIKELTEQNIAET 190 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 ++L R + + +L D + + + V+ Sbjct: 191 D--ARILTRLTN-DMSEIQTLVDNNWILDAHKALEKWFITATT----GDITAFVD----- 238 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 V + A E +L M+ + ++ A +++ELA Sbjct: 239 ----VQTRVMALAKDRFYQEKILDLMMLYAMDLLELKF--DQETITYEANRRQLQELADQ 292 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + LL + +L + + VE ++ Sbjct: 293 TNVRQLLAVADVLLPLKHQLSQNLNFQSVVEKATIKICN 331 >UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosococcus oceani RepID=Q3JAL5_NITOC Length = 337 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 121/341 (35%), Gaps = 31/341 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 Q H +L R+ HA L G G+GK S A L + L+CE CG C C Sbjct: 9 QSH-WNSLMASQIAKRMPHAILLMGPEGMGKRSFASNLIQALSCEYPQKGGHGCGSCAGC 67 Query: 80 REIEQGRFVD---LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 R G D L + V R L ++ + FK +I ++ + Sbjct: 68 RLQLAGSHPDNLTLFPREGKQTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSAA 127 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N+LLK LEEPP LL T+ +LP+TI SRC Q ++++ L+ L Sbjct: 128 NSLLKILEEPPGRTVLLLITSASLRLPITIRSRCQQLFFTISKSQEVKMWLQQRLPP--- 184 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + A+ L R + G AL +Q + S G LD +V + Sbjct: 185 SMNLDAV-TLLRLSGGGPLRALEYVEQNFLFYRKEFINNLFSLTQGKLD---LFEMVRSC 240 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 ++ N + I+ ++ + + ++ L Sbjct: 241 LKDNLGEPLYWISTLVE-----------------DTIRLRSGVSKRFLVNHDVANSLQLL 283 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLR 355 AR + + R+ + ++ +E L++ Sbjct: 284 ARRASFEMLFALLKKASCNREIWKGQININPQLLLEEILIQ 324 >UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8T4_MAGSM Length = 343 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 143/364 (39%), Gaps = 45/364 (12%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--- 70 F ++GQ+ + AL + GR+ H LF G GVGK AR L + C+ Sbjct: 3 RFEQIMGQQEAMDALTGAVRTGRLAHGLLFYGPAGVGKRLTARALVRRTLCQQVAEGALN 62 Query: 71 -------TPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRF 120 CGVC +C+ +E G DL+ ++ +R +V+ R+L V P + Sbjct: 63 AAGDRLLDGCGVCASCKRVEGGGHPDLLWMEKEQGRTRLRVDQIRELAQFVALTPLLSPY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDEV +++ + NALLKTLEEPP H +L T P L TI SRC LD Sbjct: 123 KVAVIDEVSLMNASAANALLKTLEEPPPHSLLILTTCTPGALLPTIRSRCQAVRFVPLDE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L H + EP ++ A GS+ AL L D + + ++ V Sbjct: 183 QTLGQLLRQ-----HTSLEPGMVESAMEMAGGSIGRALELCDGTLLNQRQELWQGLVLLQ 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV-EMLGLLHRIAMVQLSP 299 G ++ + E MA +A R LL + P Sbjct: 238 RGAG--------LDTVCE------MAAQWGSAERFENTVMLLEFWFQNHIRASLR-DYDP 282 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ A LA+ ++ + + +R + +E +R Sbjct: 283 SVNQQELQASNRAWLSLAQQF----------ACMVDEARI-FNLNRPLMLEHLFIRISRL 331 Query: 360 HPRM 363 + Sbjct: 332 ATQE 335 >UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNL7_9BACT Length = 290 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 17/278 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G N L+ ++HHAY+FSG G GK AR LA+ + C + PC C Sbjct: 2 IIGHGKEKDIFRNILTGDKLHHAYIFSGREGSGKKMFARELARAVICAEQVFMEPC-QCR 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +C+ D+ ++ S K+E R + + +P R KVY+ID H ++ + N Sbjct: 61 HCKVAAASDHPDIHVLE-ESPVKIEVARRIAGDAFMSPLSARKKVYIIDNAHTFTKEAAN 119 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A+LKTLEEPP F L T +++ TI SRC+ L E++ E +L + + Sbjct: 120 AILKTLEEPPADTHFFLITDKYEQVLPTIRSRCINMRFSNLTNEEV----EKVLLSQGVM 175 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ---AVSAMLGTLDDDQALSLVE 254 L +A A GS+ A+ L D A +G + + G ++ + Sbjct: 176 --NDMLPEIAAQASGSVSYAMFLLDNAEETGRFAPDRDKNSLFAEIHGLDTKEKIRAYCA 233 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 +M L+ + +L +L R+ Sbjct: 234 SMY------AYMLVKYKESEDETLLDFSNYLLEILRRL 265 >UniRef50_C8V679 Subunit of heteropentameric Replication factor (Eurofung) n=18 Tax=Saccharomyceta RepID=C8V679_EMENI Length = 398 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 130/343 (37%), Gaps = 50/343 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T DV G + +L + + ++ H L G G GKTS LA+ + Sbjct: 45 LPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPH-LLLYGPPGTGKTSTILALARRIY 103 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY---------- 113 N R++ ++E++A+ ++ R+ + Sbjct: 104 GS-----------KNMRQM-------VLELNASDDRGIDVVREQIKTFASTKQIFSMAPS 145 Query: 114 ---APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + FK+ ++DE ++ + AL + +E+ + +F + KL +LSRC Sbjct: 146 ATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC 205 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD- 229 +F L + IR ++ ++ +E + +P A+ L + G +R AL++ AS Sbjct: 206 TRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKP 265 Query: 230 ---------------GQVSTQAVSAMLGTLDDDQALSLV-EAMVEANGERVMALINEA-A 272 ++ + + + +V + ++ + +N Sbjct: 266 LPIKNAPQDQAVPEPETITNETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKI 325 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 +G+ +L + L+R+ + + +A IE R+ Sbjct: 326 NKGLALADILSALGEQLYRLEVPAQTRITWLEGLAEIEWRLSA 368 >UniRef50_B3T464 Putative ATPase family associated with various cellular activities (AAA) n=3 Tax=environmental samples RepID=B3T464_9ARCH Length = 318 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 123/290 (42%), Gaps = 29/290 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 S + K+RPQ ++++ Q+ ++ ++ + L + H LFSG+ GVGKTS A ++ Sbjct: 4 SSVMWVEKYRPQKISELINQKEIVGSINSMLKNQSELPH-LLFSGSAGVGKTSAALCVS- 61 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAP---A 116 REI + D E++A+ + R+ + Sbjct: 62 -------------------REILGKHWRDYTLELNASDERGINMVRERVKKFSRFAGLDT 102 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 FK+ ++DE ++ + AL + E+ + +F+L + K+ I SRC+ F Sbjct: 103 EIPFKIIILDEADEMTADAQTALRRITEDTAKICRFILIANNLSKIIKPIQSRCVVFKFT 162 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + ++I QL+ I +E I + + L + +G LR A+++ A+ G V+ Sbjct: 163 KISDKEILSQLKSIGKKEKIKADEKGLSAICDYTDGDLRHAINILQ--AAASSGNVTESV 220 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEM 285 V +++G + +++ ++ + E G+ L + Sbjct: 221 VKSVVGLTKTNDVQDVLKLALDGKISDARDKMIELIKVYGMSESDFLKYI 270 >UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured archaeon GZfos31B6 RepID=Q64AI6_9ARCH Length = 416 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 113/301 (37%), Gaps = 18/301 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + K+RP TF D+VG EH++ L + + + H + G + GK S +LA+ Sbjct: 72 MEQVIWTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPH-LVLYGAKNTGKMSAVFVLAR 130 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL------------ 108 L E + D ++G+ + + A +D + + Sbjct: 131 ALYGEQWENNLA--IFDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQKTVISVFKQVIN 188 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 + A F++ ID LS + +AL + +E+ +F+L+TT +L + S Sbjct: 189 EYAGMAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRS 248 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 R L + + I E +Q + A+G L A+ + Q + Sbjct: 249 RGLNLFFDRASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVL-QIASMK 307 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA--ARGIEWEALLVEML 286 +++ V + + L L+ A + + + I++ G + L ++ Sbjct: 308 RREITANTVYEVDLERIPEGILELLHASLAGDFKTARKRIDDLLMEESGADITHRLRRVI 367 Query: 287 G 287 Sbjct: 368 E 368 >UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C00 Length = 326 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 124/338 (36%), Gaps = 28/338 (8%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ G E++L+ +AN + + + +F G +G GK +A+ L CE+ + PCG Sbjct: 2 KNIYGNEYLLSTIANMIKNDKAAQSVIFCGEKGSGKRLMAKYYTMSLMCESPVDGRPCGK 61 Query: 76 CDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAP-ARGRFKVYLIDEVHML 131 C+ C ++ G D+I + + VE R +++ P KV + + Sbjct: 62 CNACHNVDMGYHPDVIYAPTSGKLGGYSVETARAVINQAYIKPNNSSGRKVCIFTDCKNT 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N LLK +EEPPE+ F+ TI+SRC+ F + + E+ + L Sbjct: 122 DPRTQNVLLKLIEEPPEYAYFIFTCNSRTDFLPTIISRCVCFGVSTVTDEEAKKALIE-- 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 P + R G++ ++ Sbjct: 180 ----DDCTPEEAESAVRCFHGNIGMCGDYIRNEELRKQVDLTK----------------G 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L ++++ + + A + + + + ++ + L+ A++ +A + Sbjct: 220 LADSIIRKDEYSLNAQLFALGSSRNDVKNVMTMLDKLVRDAAVLGRDKSAELIGCS--RE 277 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 L+ I P + + + K + + + Sbjct: 278 TAESLSGRITPYQAVRIHNKIELANKAVDCNVTIPLAM 315 >UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepID=Q0C927_ASPTN Length = 398 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 64/343 (18%), Positives = 129/343 (37%), Gaps = 51/343 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T DV G + +L + + R+ H L G G GKTS LA+ + Sbjct: 44 LPWVEKYRPNTLDDVSGHQDILATINRFIEANRLPH-LLLYGPPGTGKTSTILALARKIY 102 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--------- 114 N R++ ++E++A+ ++ R+ + Sbjct: 103 GS-----------KNMRQM-------VLELNASDDRGIDVVREQIKTFASTKQIFSMGPQ 144 Query: 115 -----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 + FK+ ++DE ++ + AL + +E + +F + KL +LSR Sbjct: 145 SGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSR 204 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-- 227 C +F L IR ++ ++ +E I +P A+ L ++G +R AL++ AS Sbjct: 205 CTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSI 264 Query: 228 --------------GDGQVSTQAVSAMLGTLDDDQALSLV-EAMVEANGERVMALINEA- 271 ++ + + + ++ + ++ + IN Sbjct: 265 PLPMKNAPKDQVRPEAEVITNETIYDCIAAPYPADIQEIMTTLLTTSDITSCLNTINTLK 324 Query: 272 AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A +G+ +L + L R+ + + +A IE R+ Sbjct: 325 ANKGLALADILEALADQLQRLEVPPQTRITWLEGLAEIEWRLA 367 >UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepID=RFC4_CAEEL Length = 334 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 113/293 (38%), Gaps = 27/293 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+T D+ Q+ V+T L L + H LF G G GKTS A + L + Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPH-LLFYGPPGTGKTSAALAFCRQLFPK 75 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF----- 120 I R +DL +A+ + R + + + Sbjct: 76 N---------------IFHDRVLDL---NASDERGIAVVRQKIQSFSKSSLGHSHREDVL 117 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DEV ++R + A+ + +E+ + +F+L +L ++SRC +F K+L Sbjct: 118 KLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 177 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E +L I + E L+ + +EG LR A+ Sbjct: 178 PAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNC 237 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + G+ D ++ ++++ A+ +++AL + A + L Sbjct: 238 YLRGSSDSLLISNVCKSILTADVPQIIALTKDITKSCT-GVAFIRRCFQQLMD 289 >UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3 Tax=Toxoplasma gondii RepID=B6KMJ0_TOXGO Length = 357 Score = 172 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 121/322 (37%), Gaps = 38/322 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+ Q L L G + H LF G G GKTS A L + L Sbjct: 31 VPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPH-LLFYGPPGTGKTSAALALVRELF 89 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--------P 115 L+E++A+ ++ R+ + P Sbjct: 90 GREEAKNR------------------LLELNASDDRGIKVVRERIKQYTKTNIAKGKINP 131 Query: 116 ARGR----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 GR +K+ ++DE M+++ + +AL + +E +F++ ++ I SRC Sbjct: 132 ETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCS 191 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + + + ++ HI + E + A+ L R ++G LR A++L A + D Sbjct: 192 PHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDN 251 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG---- 287 + A+ + G + A + + + ++ ++G + LL EM+ Sbjct: 252 LHEDAILEVAGQPPARIVTDFLRACQAS-PSQASSEVDNVISQGWDVCLLLQEMIRQVVV 310 Query: 288 --LLHRIAMVQLSPAALGNDMA 307 L + ++ + A Sbjct: 311 SPHLKDLQKARVINDIAQKEFA 332 >UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bacteria RepID=Q1J621_STRPF Length = 135 Score = 172 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 64/125 (51%), Positives = 82/125 (65%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDE 127 Y+IDE Sbjct: 122 YIIDE 126 >UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGP8_9GAMM Length = 334 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 129/342 (37%), Gaps = 32/342 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + R+ HA+L +G+ G GK L L C+ + CG C C+ Sbjct: 15 QNEQWHRIIDLHGAERLPHAFLLAGSPGTGKHRFLLSLCHYLMCQAPLAGAACGKCRQCQ 74 Query: 81 EIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G DL + + + KV+ R +++ + + +G +K+ +I ++ ++ N Sbjct: 75 LLATGDHPDLKWLAPEEKSRQIKVDQVRAVVEFLSHTSQQGGYKIGVITPAEAMNINAAN 134 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK+LEEP + L + P +L TI SRC Q E+ L + Sbjct: 135 ALLKSLEEPSDKTLLFLVSDSPGQLLPTIRSRCQQVSFPVPPEEESLQWLST------VV 188 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 L R A G AL L Q+ + G+ Sbjct: 189 PGQAETNTLLREASGQPLTALDLLSNDGLERRKQLDGDYRVVLGGSASPLVIAE------ 242 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + E +LV ++ LL R+ +++ P+ L + + L+ Sbjct: 243 ------------KWLE--YDLEEVLVRLIVLLTRLIKIKIVPSPLAAATNEEDSWYK-LS 287 Query: 318 RTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRAL 357 + + D+ ++ R + P+R++ +E L + Sbjct: 288 QNVDIRDVYSLLDSIHSIRNAINRGATPNRQLVLEQILFDSC 329 >UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LVK3_9ALVE Length = 354 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 31/330 (9%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP+T D+V + ++ + + + + H L G G GKTS A+ Sbjct: 26 NELPWVEKYRPKTLDDLVAHQEIIETIKRFVKMNALPH-LLLHGPPGTGKTSTILACARQ 84 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRF 120 + P G ++E++A+ ++ R+ + V Sbjct: 85 MY--------PPGQLRQ----------YVLELNASDARGIDVVRECIKQFVSSRSMFSGS 126 Query: 121 ------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ S AL + +E+ + +F L K+ + SRC +F Sbjct: 127 LGTNMPKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFR 186 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVS 233 L + R +++++ E + + L R EG +R L+ ++ V Sbjct: 187 FAPLKDAEARMRVDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVD 246 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRI 292 + + G + L + + M +I E G LL E+ R+ Sbjct: 247 ANIIHKVAGLPETSTIDRLEAVLCQKPLREGMMVIEELRVKHGYSVADLLREIHD---RM 303 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPP 322 V + P A + L+ Sbjct: 304 VTVDMPPRARNLLFRDLAEIEYRLSSGCSE 333 >UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacteroidetes RepID=A0M6J3_GRAFK Length = 385 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 67/400 (16%), Positives = 129/400 (32%), Gaps = 66/400 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++G H+ L RI HA LF+G G G +A A+ + C+ Sbjct: 1 MLFNDIIGLPHIKNHLTTTADRNRIPHAQLFTGKSGSGALPMAIAYAQYILCKNTGGEND 60 Query: 73 CGVCDNCR-EIEQGRFVDLIE--------------------------------------- 92 C + DL Sbjct: 61 SNTAAGCNLKFNNHSHPDLHFAFPVATNDKIKSQPISSHFLDEWRNFLKTNPYGSLYDWY 120 Query: 93 -----IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + V + ++++ ++ G FKV +I ++ + N LLK +EEPP Sbjct: 121 QSLGIEKKQGKIGVHEAQNIVKSLSLKAYEGGFKVMIIWMAEKMNMEAANKLLKLIEEPP 180 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 FLL + D +++ TI SRC + L I + L +E+ P + +A Sbjct: 181 NKTVFLLISEDEEQIIQTIRSRCQSLYFPPLSEADIANTL---AEKEN--CSPAIAKKIA 235 Query: 208 RAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLGTL-DDDQALSLVEAMVEANGERVM 265 A G A+ + + V + + L LV Sbjct: 236 HQANGDYTKAIHILRKNSGDEQFEAWFISWVRSAFKAKGNKSTVLELVS----------- 284 Query: 266 ALINEAAARGIEWE-ALLVEMLGLLHR-IAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 E AA G E + + L+ + + + + + + + + +A + ++ A + Sbjct: 285 -WSEEIAALGRETQKSFLLYCIDFFRQSLLLNYKAKSLVYLEPSAEKFKLENFAPYVHGN 343 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +I L + + ++ + ++ F + Sbjct: 344 NITEITSALETAIYHIERNGNAKIILTDLSIKLTRFLHKK 383 >UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacillaceae RepID=HOLB_BACSU Length = 329 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 128/341 (37%), Gaps = 29/341 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L N + R+ HAYLF G +G GK A LLAK C G A PC C NC+ Sbjct: 12 QPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLDAALLLAKSFFCLEG-GAEPCESCRNCK 70 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G DL + K + L + K+Y+I ++ ++ N+L Sbjct: 71 RIESGNHPDLHLVQPDGLSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAANSL 130 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP + +L T PQ+L TI+SRC + L + I +L Sbjct: 131 LKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQPKAIEDRLIEQ------DVS 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P +LLA ++ +A+ L+ + + + L E + + Sbjct: 185 PHMARLLANMTN-NVAEAVELSRNDEFAE----------------SRAKVIKLYEVLHQR 227 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 G + ++ E L +L + + +Q + +++ Sbjct: 228 KGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQ-IGNEDKLIYQDLFQSIKQH 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + +L +K L + + +E +L Sbjct: 287 ALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLMLQ 327 >UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU0_9FIRM Length = 319 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 129/338 (38%), Gaps = 30/338 (8%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 ++V + L L HAYLF G +G+GK + A+ A+ + C C Sbjct: 12 KNVSSQLDLALKNKDFSHAYLFVGPKGIGKFAQAKNFARAILCGDNKNDK-----SFCNL 66 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 + DLIE+ + K E +L++ P K+ LID ++ NALLK Sbjct: 67 LYDYFHPDLIEVSSKETIKKEQIEELIEKAGTKPFESNKKIILIDGFDNVTIEGQNALLK 126 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP +++ +L +++ + + TI SR + + VE+I L E Sbjct: 127 TLEEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYLLKTGLSEKN----- 181 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L + + GS+ A + D+ + +++ ++ Sbjct: 182 -ARLFSNLSCGSISLAKRYKEDVELLKKR----------------DELIEILDNLIRTGS 224 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + ++ E +L +A ++++ ++ + + EL + Sbjct: 225 YYIFSYLDFFKENKENIEDILNFFSLWFRDLAFIKINKKEKIINIDKLN--ILEL-EDLT 281 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I Y +L+ ++ L + + +E L+ Sbjct: 282 LDRILFIYNKILLTKENLSKNMNYDLSIEALLMYIGGM 319 >UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ES29_AMOA5 Length = 381 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 69/383 (18%), Positives = 126/383 (32%), Gaps = 68/383 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ + L + +I HA LF G G ++A A LNC+ + Sbjct: 2 MQFADIPTHLQLKKRLIYLATSEQIPHAQLFWGPPGSACITLALAFAAYLNCKNRLPEDS 61 Query: 73 CGVCDNCREIEQGRFVDLIE------------------------------------IDAA 96 CG+CD+CR+++ ++ D + Sbjct: 62 CGICDSCRKMKNSTHPNVKFIFPINTTKLNSETEITSNNFLKLWYPFIKTQPYGDITDWS 121 Query: 97 SRTKVE---------DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 E + + + +K+ I + NA+LKTLE+PP Sbjct: 122 HHIGAEHKQLIIPRVEAKYISQYASMQSLESSYKIIFIWLPEYFHPTTANAMLKTLEDPP 181 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 H F L + P+KL TI SR Q ++ E I L + L + Sbjct: 182 PHTLFFLVSLAPEKLLGTIRSRLQQVYIPLFSDEVIAQLLAQ-----QYELSSQKLGEVV 236 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 R AEG+L A L +++ +T+ G + + ++MA Sbjct: 237 RLAEGNLNKAYKLIEES--------NTELFEQCKG---------WMRVCYAQDFAKLMAH 279 Query: 268 INEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 + + L +L ++ + +VQ S + +L +T+ ++ Sbjct: 280 AENFQGIQKENQKYFLNYILHMIRQALLVQFSHENVIRIHGEERQFAEKLGQTLDYDAVK 339 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 L + + ++ Sbjct: 340 KINTWLNQSHYYIDRNLNPKILF 362 >UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Tax=Trypanosomatidae RepID=Q4FYR7_LEIMA Length = 360 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/361 (19%), Positives = 137/361 (37%), Gaps = 27/361 (7%) Query: 1 MSYQ--VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS K+RPQT D+VG ++ L G + + L G G GKT+ L Sbjct: 1 MSTVDTPWVEKYRPQTVVDIVGNTEAISRLQVIAKQGNLPN-LLLCGPPGTGKTTSMLCL 59 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ------ 112 A+ L ++ T + G + + ++E++A+ ++ R+ + Sbjct: 60 ARDLLLQSTDTGSA-GASPGGAMKDILKDA-VLELNASDDRGLDVVREKIKLFAQTKKTL 117 Query: 113 ----YAPARGR---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 ++ G K+ L+DE ++ + AL +T+E +F A + Sbjct: 118 PKKFFSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNS 177 Query: 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 ++ I SRC K L I +L +++ E++++ L+ L AEG LR AL+ Sbjct: 178 SRIIEPIQSRCAVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALN 237 Query: 220 LTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA-MVEANGERVMALINEAAARGIEW 278 QA +G G V+ V + +++ A + + N E +N RG Sbjct: 238 AL-QATHTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAP 296 Query: 279 EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRK 337 ++ + A + S + + +A + P + ++ + Sbjct: 297 VDVIATFFKVAQTHARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAALE 356 Query: 338 E 338 Sbjct: 357 N 357 >UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNC9_9SPHI Length = 376 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 67/382 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQ + L + + + HA +F G G +A A+ ++CE Sbjct: 1 MLFKDIIGQTEIKQQLIHAIQSNHVAHAQMFWGAEGGAALPLALAYAQYIHCENKQATDA 60 Query: 73 CGVCDNCREIEQGRFVDLIE---------------------------------------- 92 CG C C + ++ DL Sbjct: 61 CGTCAACIKSQKLIHPDLSFVFPVATTKKISSKPVSKDFMEEWRQFLTKHPYVSLSDWLS 120 Query: 93 ----IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + V+++R ++ + P +K+ L+ ++ + NA+LK LEEP Sbjct: 121 FIDAESKQANISVDESRHIIQQLSLKPFESEYKILLLWLPEFMNISAANAILKILEEPSP 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL + +P +L TI+SR + E++ + L H P Q +A Sbjct: 181 KTLFLLVSQNPNQLLATIISRVQAVQTAPITDEEVANYLVA-----HQQLPPEKAQQVAY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+GS+ A+ L D + + + + + E +++L Sbjct: 236 MADGSINAAIHLLDN-----------------THHTQHELFVEWMRTCFKKDMEALVSLT 278 Query: 269 NEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + A + + L L + + + L ++ +R + + L Sbjct: 279 DTFAKLSKDQQKNLFQYGLHICREALVWKQGDEQLVRLAGKEYQFVQNFSRVLQIHNSSL 338 Query: 328 YYQTLLIGRKELPYAPDRRMGV 349 Y+ L ++ Sbjct: 339 LYEQFNDAIFHLERNASPKIVF 360 >UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus plantarum RepID=C6VLN8_LACPJ Length = 339 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 27/345 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q +L A + ++ + HAYLF+G G G+ +A +A+ L C P G C+ C Sbjct: 15 QPRLLAAFKHIIAQNHLAHAYLFAGMEGAGQPELAHWIAQRLFCLHINDGEPDGTCEECV 74 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D++ + R V+ R L + G K+++I++ ++ + N+L Sbjct: 75 RIANGSHPDIVTVAPEGQRIHVDQVRYLKAEFSKSAVEGNRKLFIINDAEKMTASAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V LL TT+ Q + TI+SR L+ L+ + IA Sbjct: 135 LKFIEEPSGNVTALLLTTNKQLMLPTIISRTQVIEFPPLN----AQALQQTFEQAGIA-- 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P Q+L S+ A +L + V+ Sbjct: 189 PNQAQMLRGLTN-SVTQAQALLADDWLPQAA----------------QALWRWFDQAVKG 231 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + +A+ + + +L + L + + A + + L Sbjct: 232 DPRSFVAVQVNLVGLAKDADHQLVMLDLIAALFQDLLQLHFEVATTALTFGQYQKELAGL 291 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L +++L + +E L+ Sbjct: 292 TAEVSDEQLIAATELALTAKRQLASNISFQNVLEGLTLKLWPIFQ 336 >UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VE93_MONBE Length = 331 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 50/324 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP + ++ ++ + ++ R+ H L G G GKTS + AK L Sbjct: 22 LPWVEKYRPSSLDQLISHTEIINTIQRFINEDRLPH-LLLYGPPGTGKTSTIKACAKQLY 80 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 R +L+ FK+ Sbjct: 81 ------------------------------------GKGYKRMVLE---VRLVTSGFKLV 101 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE +S + AL + +E+ +H +F L K+ + SRC +F L +++ Sbjct: 102 ILDEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDEL 161 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD---------QAIASGDGQVST 234 + Q++ ++ E++ P + L R A+G +R AL++ + A G + Sbjct: 162 KSQVQRVIKAENLTVTPEGIDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGDIDA 221 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIA 293 +AV T D S+V M+E LI+E +G+ + +L E+ +H I Sbjct: 222 RAVYTCTATPQPDDIQSIVSWMLEKPVAEAYKLISEVKTEQGLALQDILKEVHRFMHNID 281 Query: 294 MVQLSPAALGNDMAAIELRMRELA 317 L A IE R+ + A Sbjct: 282 FPTDCKILLLERFADIEHRLADGA 305 >UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=Coriobacteriaceae RepID=C8WG75_EGGLE Length = 383 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 125/385 (32%), Gaps = 38/385 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE---TGITAT 71 F +++GQ V L ++ G++ HAYLF+G G KT A A+ + C +G Sbjct: 5 FENILGQPQVREFLRATVAQGKVSHAYLFTGPAGSNKTMAAYAFAQAVLCPKGASGPRGG 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG CD CR I + + D+ VE RD++ + AP + KVY++D V Sbjct: 65 NCGACDACRRIMRKKHPDVRYFAPEGAGGYLVEQIRDIVADTSMAPIQAHKKVYILDRVD 124 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L + NA LKTLEEPP V +L + + TILSRC + + + + Sbjct: 125 LLGVQAANAFLKTLEEPPSDVVLILLARTRESVLPTILSRCQVVPFRTIPASEAAGIIVQ 184 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--------VSTQAVSAML 241 + ++ A +GS+ A+ + + Sbjct: 185 -----NTGASREQARMAVEACDGSITRAVEFLKSNERLAFRTRVLEVLGCLRKADDWDAV 239 Query: 242 GTLDDDQA-----LSLVEAMVEANGER-----VMALINEAAARGI---------EWEALL 282 G + L + A E + I + AR L Sbjct: 240 GFASELVVLVKAPLDVARAEQEQELAENADFLAKSAIRQIEARNKRQLTAKTFESLRQLT 299 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + L + + + E A + + + Y Sbjct: 300 AIVRSWLRDVM-AVCAETPELVINVDARASVMEAAEATDEARAAAALAAVRRCDEAISYN 358 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPE 367 ++ L + Sbjct: 359 VSPETCIDAMLFEIREVLYGSHSAD 383 >UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , putative n=3 Tax=Piroplasmida RepID=Q4UIH2_THEAN Length = 336 Score = 169 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 121/301 (40%), Gaps = 38/301 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +DV+ Q ++ + + + H +F G G GKTS A +A+ + Sbjct: 7 VPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPH-MIFHGPPGTGKTSAALAMARQIY 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY---------- 113 G+ ++E++A+ ++ RD + Sbjct: 66 GLEGMRER------------------VLELNASDERGIDVVRDRIKTYTRINISNNRVNP 107 Query: 114 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 +K+ ++DE M++ + AL + +E +F+L K+ I SRC Sbjct: 108 ETNRVMPNYKMIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCS 167 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASG 228 FH K ++ +L++I N+E I +P+ L + + G +R ++++ + A Sbjct: 168 VFHFKPIETNSQIDRLKYICNQEGITFDPKFLTTI---SSGDMRKSITILQVILGSTACL 224 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +++ A+ ++ G S+ E + V ++ + G + ++ ++ Sbjct: 225 YNEITENAIYSVSGKPPKRVVESIFE-VCRRPEGDVESVCKQIVHDGWDISSIFQQICEY 283 Query: 289 L 289 + Sbjct: 284 V 284 >UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI37_DESAH Length = 345 Score = 169 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 125/339 (36%), Gaps = 19/339 (5%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC--ETGITATPCGVCDNCREIE 83 L L+ +I +A LF G +GK A A+ LNC E C C +C++I Sbjct: 21 QDLVALLATLKIPNALLFVGNPDLGKVETALAFARALNCQGEKRNDGLACDQCRSCKKIL 80 Query: 84 QGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+I + R K+ R++ ++ P +F++ LI ++ + NALLK Sbjct: 81 SSMHPDIICVAPVKERIKISQIREIYGQIKAKPHEAKFRMVLIQGAEAMNPEASNALLKI 140 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPE F+L T L TILSRC Q +D +I L + Sbjct: 141 LEEPPERTFFILTTERTDGLLPTILSRCRQVTFSPMDQGKIEQILVR-----DHGIDTTT 195 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + A ++GSL+ AL G V + + ++ + AN Sbjct: 196 AGIAASWSQGSLQKALKF--------TGIVKSDDTTD-WPERRRWMITAISTLIRGANPG 246 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + L + L + + + + + + + + + E I Sbjct: 247 VALLLAEKINQNPELLGGTLAILESFFRDMVVFKYNTEKI--INSDFQTLLTETDSGIST 304 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + L K++ R+ +E L + + Sbjct: 305 QRVLSWITELHHVEKKIKANAGIRLTLEAFLFKLIPARQ 343 >UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium RepID=C8W7S8_ATOPD Length = 389 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 142/388 (36%), Gaps = 48/388 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 PQ + Q V LA L ++ HAYLF G G GK A+ LA+ + C G A Sbjct: 16 PQALTRLQDQPQVQNLLARALHEHKLGHAYLFVGAPGSGKGLAAKALAQCVLCAQGGDA- 74 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CD+C I +G D+ + AS +E R L +V AP R K+Y+ID Sbjct: 75 ---ACDDCIRISRGTHPDVHVLTPASANGYLIEQIRQLTADVSLAPMRSTHKIYVIDRAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L +S NALLKT+EEPP F+L+ + TI+SRC + L + + Sbjct: 132 LLRENSANALLKTIEEPPADTIFILSARSSSAVLPTIVSRCQVVAFRTLTDAVAKAAIMR 191 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ- 248 I+ + + +A AA G+ A+ +S + Q + + G L + Sbjct: 192 -----EISATEQEAR-IALAATGTPSRAVEFLQ---SSTRKNIRRQLI-DVFGNLLRNDS 241 Query: 249 ------ALSLVEA--MVEANGERVMALINEAAAR-------------------GIEWEAL 281 A L+EA + + +R + E + Sbjct: 242 WDVLISAKELIEAAKIPLGDVKRAQEEALAQSEDFLTSAALKQVEAANKRELTARERSGI 301 Query: 282 LVEML---GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 + + LL + + + + +A + + + Sbjct: 302 IEMLAILESLLRDVLLCCEAIDE-EIVNTDAAGIIDRVASQTHTQGVLGALAAVQEAQNN 360 Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLP 366 L + ++ +E+ LL PL Sbjct: 361 LDRSVSPQLTLEVMLLHIKEALTCPPLS 388 >UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XT6_CYTH3 Length = 375 Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 132/383 (34%), Gaps = 68/383 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+++ G + V T L N ++ + HA LF+G G +A A +NC Sbjct: 1 MQFSEIPGLQEVKTTLVNSVTNNHVAHAQLFAGVEGSAALPLALAYATYVNCLEKADGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTK-------------------------------- 100 CG C +C + + DL I + K Sbjct: 61 CGKCSSCSKYNKLIHPDLHIIFPVTTNKKITKDASSEVFFPEWRETFLANPFFTFNDWME 120 Query: 101 ------------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 VE++R ++ + +KV +I + NALLK+LEEPP Sbjct: 121 VIDGENKQLLINVEESRTVVKKISMKAFEAEYKVVIIWLPETMRAEGANALLKSLEEPPA 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL T +KL TI+SR + ++ + +IR L H + + Sbjct: 181 KTLFLLITAKQEKLLTTIISRTQRVQVRLFNDAEIRQYLIQ-----HRNISEAQAKRVTY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+G++R+A+ L + + + A + + ++ + Sbjct: 236 LADGNMREAIQLLSEED-----------------QDHESKIRDWFRACFGSKLQDMIRMS 278 Query: 269 NEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTIPPTDIQ 326 +E + E ++LL LG+ M + L M ++ + I + Sbjct: 279 DEFGSLPRELQKSLLQYGLGIFRDSLMYKEVGTDLLRVDEESSDDMVQKFSNVIDFQKVV 338 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 Q L E+ + +M Sbjct: 339 SLSQVLNEAHAEIERNINSKMVF 361 >UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB Length = 456 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 142/351 (40%), Gaps = 54/351 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ+ +L A L + GR+ H+ + G G GKT++A LLA Sbjct: 24 PLAERMRPRTLDEMVGQKRLLAADSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHY 82 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + E + A + + D R +L A GR Sbjct: 83 ADAEFKAIS-------------------------AVLSGLPDVRQVLAEAAQRFASGRRT 117 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 V +DEVH ++ +A L +E + F+ ATT+ +L +LSRC L+ + Sbjct: 118 VLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENPSFELNSALLSRCRVHVLEGVS 175 Query: 180 VEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGD 229 + I L+ L+ +E I +L +A AA+G +R AL+L + + Sbjct: 176 PQDIVEALQRALHDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEG 235 Query: 230 GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 G+++ + + +L G DQ +L +++ +N + + + G + Sbjct: 236 GEITPRTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPA 295 Query: 280 ALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 L + + + I + ++ + I R+ + + LY Sbjct: 296 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346 >UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QKY2_ESV1 Length = 324 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 132/340 (38%), Gaps = 29/340 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLA 59 M+ Q K+RP F++VVG + ++ L+N + I H L G G GKT +L Sbjct: 1 MTAQPWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPH-LLICGPSGCGKTVCVDIL- 58 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----A 114 C I + R ++ + + +++ R + N Sbjct: 59 -------------CNT-----MIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTE 100 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P K+ ++DE ++ +F AL + ++ +F++ + K+ I SRC Sbjct: 101 PTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILR 160 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 +D Q+R ++ + + + ++P + LA A+G +R A++ ++ G ++++ Sbjct: 161 FSKVDDAQLRLRIRQVCDMAGVEYDPGGIGALACVADGDVRSAINSLASIVS-GFRRLTS 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGE-RVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + V + + + +V+ + G + G E + + ++ Sbjct: 220 ENVYRTCRSPQPAKIVDIVDLLRNKGGYVEACRKLRGLCGEGGEGYSPTDILSSFFKALS 279 Query: 294 MVQLSPAALGNDMAAI-ELRMRELARTIPPTDIQLYYQTL 332 ++ + + I ++ R L+ + ++ Sbjct: 280 VIDVRESQRIEIAKVIGLVQNRVLSGASSYLQLAAMLWSI 319 >UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Enterobacteriaceae RepID=HOLB_YERPE Length = 340 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 123/350 (35%), Gaps = 28/350 (8%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L S GR HHA L G G+ ++ L++ L C+ CG C +CR + G Sbjct: 12 RQLVGQHSTGRGHHALLLHSLPGNGEDALIYALSRWLMCQQRQGEKSCGECHSCRLMLAG 71 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D + S VE R L+D + +G KV + +L+ + NALLKT Sbjct: 72 NHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAANALLKT 131 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPE FLL P L T+ SRC ++L D L + I EP A Sbjct: 132 LEEPPEKTYFLLDCHQPASLLATLRSRCFYWYLACPDTAICLQWLNLQWRKRQIPVEPVA 191 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + + +EG+ A L S + + S + L+ LSL+ + + Sbjct: 192 MLAALKLSEGAPLAAERLLQPERWS----IRSALCSGLREALNRSDLLSLLPQLNHDDAA 247 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 L + LL Q +++LA Sbjct: 248 E-----------------RLQWLSSLLLDALKWQQGAGEFA-VNQDQLPLVQQLAHIAAT 289 Query: 323 TDIQLYYQTLLIGRKELPY--APDRRMGV-EMTLLRALAFHPRMPLPEPE 369 + + L R +L +R + + E L A P Sbjct: 290 PVLLQLAKQLAHCRHQLLSVVGVNRELLLTEQLLSWETALSTGTYSTLPS 339 >UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925630 Length = 322 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 21/219 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP D++ + ++ + +S G++ H LF G G GKTS +AK L Sbjct: 123 WVEKYRPACLDDLISHKDIIDTIQKFISEGKLPH-LLFYGPPGTGKTSTILAVAKQLYSP 181 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR-GRFKVY 123 ++E++A+ + R +L +FK+ Sbjct: 182 KEF------------------HSMVLELNASDDRGIGIVREQILGFASTRTVFKSKFKLV 223 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + NAL + +E+ E+ +F L + I SRC +F LD +Q+ Sbjct: 224 ILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQV 283 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 +L+H++ EE++ ++ L R +G +R +L++ Sbjct: 284 SLRLKHVIQEENVTVTEDGMKSLIRLGKGDMRRSLNILQ 322 >UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiaceae RepID=A4SFZ4_PROVI Length = 391 Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 140/386 (36%), Gaps = 61/386 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-- 70 ++ V+GQ+ + L + L GR+ HAYLF+G G GK +A LAK L+C + T+ Sbjct: 1 MSWNTVIGQQQQVRVLRSALLGGRLAHAYLFTGPDGAGKEMVAFELAKALSCTSSGTSPE 60 Query: 71 TPCGVCDNCREIEQGRFVDLIE-------------------------------------- 92 CG+C +CRE+E ++ Sbjct: 61 GACGLCADCREMEALLHPNVEYLFPVESALLEGSDSPKKDNRKFTEAKERYDTLLEQKKA 120 Query: 93 -------IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 +D + E L + P G KV++I + L + N LLK LEE Sbjct: 121 NPYFTPCMDRSMGILTEQVIQLQQKASFMPREGSRKVFIISQADRLHPSAANKLLKLLEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP H+ F+L ++ P+ L TI SRC + + + ++R + E+ P + Sbjct: 181 PPPHILFILVSSRPESLLPTIRSRCQEIIFQRIPERELRSWM----EEQRTDIAPDERES 236 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 + +A+ GSLR A L + G + L L ++ + + + Sbjct: 237 IVKASRGSLRRAWELMLNRMEPGFEPAEKAIRTKALDYLR--------SILMAGHFHKAI 288 Query: 266 ALINEAAA--RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 E E + +L L ++PA + I + AR P Sbjct: 289 LSAEEQTKNLSRQELILFISSILLFLQDAMHRSINPAFANLNNPDIADAVDRFARNFPNP 348 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGV 349 D+ + L + + Sbjct: 349 DLMAISTLAEESIRSLERNAGSLLVM 374 >UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacteroidales RepID=B6YQP6_AZOPC Length = 378 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 126/388 (32%), Gaps = 75/388 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ + L + G I HA L +G +G G +A + L C Sbjct: 1 MFFRNIVGQTIIKQRLIQSVKDGFIPHAQLITGNQGTGTLILALAYIRYLYCTNRQEKDA 60 Query: 73 CGVCDNCREIEQGRFVDLI----------------------------------------- 91 CG C +C++ ++ DL Sbjct: 61 CGTCPSCQKFDKLVHPDLHFIFPIINKKRREDKKEALCHDFLPEWRNFVLTTPYADFTSW 120 Query: 92 -----EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 E +A ++ D++ +++ +K +I + + + LLK LEEP Sbjct: 121 LINIGEENAQGLIYARESDDIMRKLRFKAYEADYKSVIIWLPEKMHETAASRLLKLLEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PE FLL + +P K+ TI SR + + + + L +E + + Sbjct: 181 PEKTVFLLVSEEPDKIIATICSRMQVMAVPPIADQDLFQTL-----QEKYDIPDQDIWHA 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 R AEGS A + D++ L+L ++ + ++ + Sbjct: 236 IRLAEGSYEKATKILSSVE-------------------DNESYLNLFTTIMRNSWQKNIL 276 Query: 267 LINEAAARGIEWEA-----LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 I + L+ ++ + +L+ + + + Sbjct: 277 SIKVETDKFTSMSRAQQKKFLMYAQQMIRENFLYRLNELKINFMNHKENEFAIKFHPYVN 336 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGV 349 T++ + + + + + + RM Sbjct: 337 ETNVIKFMEEFSLAEQHIESNINPRMVF 364 >UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=Enterococcus RepID=C7D0N7_ENTFA Length = 324 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 117/338 (34%), Gaps = 43/338 (12%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L GR+ HAYLF G G GK +AK + C + PC C NC I + Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQQPCNECHNCVRINEN 83 Query: 86 RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D++ I + KV R+L + KV+LI E +S + N+LLK LE Sbjct: 84 EHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEADKMSTGAANSLLKFLE 143 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP + +L TT ++ TI SRC H + L + + +L E A Sbjct: 144 EPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIKQGIGEKTAI------ 197 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 LLA S A+ ++ + ++ L + + + Sbjct: 198 LLAELTN-SFEKAVEISQDEWFNEAREI----------------ILQWFNYLKSNDLQAF 240 Query: 265 MALINEAAARGIEWEAL---LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + + E E ++ ++ E + A+ + Sbjct: 241 IYVQKKMVKVFKEKEQQALSFDLLMVYYRQLL---------------EESVATQQAKKVT 285 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +L R++ + E +++ + Sbjct: 286 EEQAER-LALILKARQKWTANVSWQNVCEQLVIQMIHP 322 >UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MGG0_BRAFD Length = 394 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 133/380 (35%), Gaps = 47/380 (12%) Query: 15 FADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 +ADVVGQE + S G + A+L +G G G+++ AR A L CE G C Sbjct: 19 WADVVGQEAAVAQFRRAASPEGSLAQAWLVTGPPGSGRSTAARAFAATLQCEQGTG---C 75 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR D+ + E+ R L+ Q APA G +V +I++ +S Sbjct: 76 GQCRACRTTLANTHPDVTVVATDKLSIAKEEVRALVMTAQRAPATGNRRVVIIEDADRMS 135 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 +FN LLK++EEPP ++L + L TI SRC L + L Sbjct: 136 AGTFNVLLKSIEEPPPATVWMLCAPSAEDLAPTIRSRCRLVTLAVPSSAVVADLLRR--- 192 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST----------QAVSAMLG 242 + + ARAA+G + AL Q A + S QAV A G Sbjct: 193 --RDGIDEQLAVRAARAAQGHIGLALRYATQEGALAAREDSARTLLSLRGTGQAVLAAQG 250 Query: 243 TLDDDQALS--------------LVEAMVEAN---GERVMALINEAAARGIEW------- 278 +D A + + + + + + + + Sbjct: 251 LVDRATAEAKEHADVVAAEEKERFLRSAGIDDGKVPPSLRSQVRQLEEDAKRRQTRLVRD 310 Query: 279 --EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + L++ +L + + A + + + A + + R Sbjct: 311 VLDRYLLDAHSVLRDVL-SRQLGTAAELVNLEVAGEIEDAAGHGSGKITLGLLEAVQEAR 369 Query: 337 KELPYAPDRRMGVEMTLLRA 356 + + +E L R Sbjct: 370 DRISGNVPPLLAIEALLSRI 389 >UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4_GEOSL Length = 440 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 123/347 (35%), Gaps = 57/347 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + VGQEH+L L + + + +F G G GKT++AR++A Sbjct: 17 PLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLT-SLIFWGPPGSGKTTLARVIAN- 74 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 +A + +++ R+++ + RGR Sbjct: 75 ---------------------ATKSHFIFF---SAILSGIKEIREIVKEAEEEKKYRGRN 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+H ++ +A L +E + ++ +LSRC L L Sbjct: 111 TILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQ 170 Query: 181 EQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 E + L L + +A + AL +A + G R AL+ + A +G++ Sbjct: 171 ENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRI 230 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 ++V + G + + +++M ++ + + + G + +L Sbjct: 231 DLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFIL 290 Query: 283 VEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELARTI 320 M+ L + + + + A T Sbjct: 291 RRMVILASEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATY 337 >UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F0_COPC7 Length = 316 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 64/313 (20%), Positives = 118/313 (37%), Gaps = 39/313 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M ++V K+RPQ D+VG + L G H + SG G+GKT+ LA Sbjct: 1 MPFRV--EKYRPQVLDDIVGNTDTIERLKVIARDGNCPH-LIISGMPGIGKTTSIHCLAH 57 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 L + + + D ++A+ + ++ R+ + Sbjct: 58 QLLGDAYKEG-----------VLELNASD-ERLNASVDSGIDVVRNKIKAFAQKKVTLPP 105 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR K+ ++DE ++ + AL +T+E +F LA K+ I SRC Sbjct: 106 GRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAK 165 Query: 178 LDVEQIRHQLEHILNEEHIA--------------------HEPRALQLLARAAEGSLRDA 217 L +++ +L I E + + L L AEG +R A Sbjct: 166 LRDQEVLKRLLEICEMEKVCSGFFYRLPVKGQYLYERQVQYNDDGLTALIFTAEGDMRQA 225 Query: 218 LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++ Q+ SG G VS V + S++ A ++ + + ++E +G Sbjct: 226 INNL-QSTHSGFGFVSADNVFKVCDQPHPIVVQSMIRACLKGEIDPALEKLHELWDQGYS 284 Query: 278 WEALLVEMLGLLH 290 ++V + ++ Sbjct: 285 AVDIVVTLFRVVK 297 >UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX48_CHRSD Length = 323 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 123/340 (36%), Gaps = 35/340 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + T L R+ HA L SG GVGK +A L C T CG C C Sbjct: 7 QRDLWTRLVRQQDAQRLPHALLISGPHGVGKHDLADALIARTLC-HAPGETACGECHACH 65 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G DL++I A + +++ R + V +G +V + ++ + N Sbjct: 66 MLASGYHPDLLDISPAEKRRQIRIDPIRQVNAFVSQTAQQGGHRVIRLHPAEAMNVAASN 125 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK+LEEP E F+L P ++ TI SRC + L D E L L Sbjct: 126 ALLKSLEEPGERTLFVLLADIPSRMLPTIRSRCQHWSLGVPDAESALPWLSERLE----- 180 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + + R A G + AL L + G + L +A+V Sbjct: 181 -DAEQARFWLRVAGGLPQFALELVE-------------------GRALRQELRELFDALV 220 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 +A + ++ +L + L + + ++ A + R+ Sbjct: 221 RG--AEPVAEAARLDPQSLD--RVLWYGIVWLEDLIRLGVAGDAEHVRNPDLLPLYRQAV 276 Query: 318 RTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLR 355 + D R+ + P+ ++ +E L+R Sbjct: 277 KNARVRDWFRLLDYAREQRRLIAAGGNPNAQLVLEAWLVR 316 >UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxalobacter formigenes RepID=C3X9N7_OXAFO Length = 355 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 118/368 (32%), Gaps = 65/368 (17%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNC 79 L ++ HA LF G G G S A AK CE CG C +C Sbjct: 13 HRKNWEYLVRL--ESKLPHALLFYGPAGTGVESFAESFAKARLCENRQPDGNACGGCQSC 70 Query: 80 REIEQGRFVDLIE------------------------------IDAASRTKVEDTRDLLD 109 +Q D + + + + +E R L D Sbjct: 71 HWFDQNSHPDFRQILPETLEIAKGLDDPDKKTDDDSGASDKKTREPSKKIGIERIRSLAD 130 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 + + RG +V + ++ S N+LLK LEEPP + F+L T L TILSR Sbjct: 131 FINISTHRGGLRVVSVYPAEAMTTESSNSLLKMLEEPPANTLFILTTNHLDALLPTILSR 190 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 C + + L+ + + A LA G+ A +++ + Sbjct: 191 CSKLAFPMPETSMAIGWLKE----QGV---DEAESWLAEQ-GGAPVTA---LEESRSGSR 239 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 +++ L DD L E + + + L+ L Sbjct: 240 EEMTLFLAE--LAAPDDSGLLRTAEKL-----------------QKVPLSDLITWHQRWL 280 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + + ++L+ + +A + + +T+ ++ + R+ + Sbjct: 281 YDLLSIRLTG--RERYYPRYRQELSGMADRVDMDRLLKVLKTVNDRKRVADHPLVPRLVL 338 Query: 350 EMTLLRAL 357 E LL Sbjct: 339 EDMLLDYR 346 >UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC5_9CLOT Length = 327 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 132/354 (37%), Gaps = 36/354 (10%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 D G + + L L+ GR+ HAYLF G +G GK ++A A+ + C A PCG C Sbjct: 7 DFYGNKESVQTLTCSLTGGRLSHAYLFYGPKGSGKRTLATQFAQAILCRD-PAARPCGRC 65 Query: 77 DNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 +C ++ + DL+ S E R + P G +KVY++ V +S Sbjct: 66 ADCLKVSKLIHPDLLLEGGEGGKSSFHAEVVRKIRSEAYIRPNSGEYKVYILCGVENMSI 125 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLK LEEPP HV FLL +P T++SRC+ L ++ + + Sbjct: 126 AAANALLKVLEEPPRHVVFLLTCESKSAIPETLVSRCVPVALYPVEPRECAEAVAR---- 181 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 ++ E Q + A+SL+ I G ++ + + + A L Sbjct: 182 --LSGETDQAQ---------IDYAVSLSGGLIGGALGLLTDKEMRQA-----SETAQKLR 225 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 ++++ + + +L + G++ + + ++S Sbjct: 226 DSLLSPDELDTLVASAPLDGNRALTLRVLPLLTGVIRQSILSKVSARPDP---------- 275 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 LA + +T+ + L + + + Sbjct: 276 --LACKYSLKALLRMVKTIDQAQSNLERNANLGLTLCWLCAGLRQTGTAAHTQA 327 >UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZM0_9PROT Length = 335 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 133/359 (37%), Gaps = 52/359 (14%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 Q AL R+ HA L G +G+GK +A A+ L CE T C C++C Sbjct: 8 QSESWQALQGL--RNRLPHAVLLKGAQGIGKLDLAMNFAQSLLCEKPNADGTACHTCNSC 65 Query: 80 REIEQGRFVDLIEIDA------------------ASRTKVEDTRDLLDNVQYAPARGRFK 121 EQ D + + V+ R+L + + G ++ Sbjct: 66 HWFEQENHPDFRLVQPDALSSADEGDEKQGGKKPSREISVDQIRNLSNFANLSAHCGGYR 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V LI ++ ++ N+LLKTLEEP +++ FLL + PQ+L TILSRCL F + E Sbjct: 126 VVLIHPAESMNNNAANSLLKTLEEPTDNLLFLLISHKPQQLLPTILSRCLGFTVSTPTRE 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 L ++ + + AL + + AL ++ + + + A+ Sbjct: 186 LGTAWL----EQQGVKNPAHALAQ----SGFAPLQALGWSESGEGAEERSILLNAIRQ-- 235 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 AL+L + + + + + H + +L+ Sbjct: 236 --PSKMDALALADGLQRSAP-----------------IYSIHCLQQWCHDLTSAKLAG-- 274 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +LA + + + + LL R+ + + ++ +E LL Sbjct: 275 MVRYFPEQAGEITKLANGVSSDALLRFQKELLEARRAAYHPLNPKLFLESLLLSYRQLF 333 >UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA Length = 361 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 112/297 (37%), Gaps = 31/297 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP++ DVV Q V+ L LS + + L G G GKTS A+ L Sbjct: 36 VPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPN-LLLYGPPGTGKTSTILAAARQL- 93 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 ++E++A+ + R+ + A G Sbjct: 94 ------------------FGDMFKERILELNASDDRGIAVIRNKVKTFAQLTASGTRTDG 135 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ I SRC +F Sbjct: 136 KPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFR 195 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQV 232 K L E+I +L +I ++E + + + + + G LR A++ + ++ Sbjct: 196 FKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSCHRLKGAQARI 255 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 Q + M G + + + +N ++ + + L ++ + Sbjct: 256 ERQDILEMSGVVPERYLEEFISVCKSSNYSKLEEYVQNLSYDAYSVGQLFEQLTEYI 312 >UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=Actinomycetales RepID=A1SDP5_NOCSJ Length = 385 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 135/385 (35%), Gaps = 58/385 (15%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + +VGQ AL + HA+LF+G G G+++ A A L CE CG Sbjct: 4 WDGLVGQHRPSEALRAAAHGQGMSHAFLFTGPPGSGRSNAAVAFAAALQCERPED-RGCG 62 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C + G D+ I V++ RDL+ AP R+++ ++++ L+ Sbjct: 63 ECHECHTVLTGSHADVAVIRTEKLSIGVDEMRDLVRRSALAPVGRRWQIMIVEDADRLTE 122 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 ++NALLK +EEP + ++L + + T+ SRC L + + L Sbjct: 123 RAWNALLKAIEEPADRTVWMLCAPTVEDVLPTVRSRCRLVTLTTPTTDDVASFLVRA--- 179 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----------------------- 230 + ARA++G + A +L Sbjct: 180 --DGVDAAVASYAARASQGHIGRARALARDEATRNRRREVVALPARLVSLRACMEAATSL 237 Query: 231 -QVSTQAVSAMLGTLDDDQALSL-------------------VEAMVEANGERVMALINE 270 +V+ Q + G LD + L + + + R + Sbjct: 238 AEVAKQEAELVTGELDAREKADLDAAYGVVERGRRPREYAPALRDLEKDQKTRAKRRYLD 297 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT-DIQLYY 329 RG L++++ + A+ + AA I + LAR P +++ Sbjct: 298 VVDRG------LMDLVSVYRD-AIAVATGAAGLLVNEEIRGDVELLARVSTPEVNLRRIA 350 Query: 330 QTLLIGRKELPYAPDRRMGVEMTLL 354 + L + + +E ++ Sbjct: 351 AIFEAREQMLEFNVQPMLALESMMV 375 >UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=2 Tax=Oligohymenophorea RepID=A0CAF3_PARTE Length = 340 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 115/299 (38%), Gaps = 33/299 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T +V+ E ++ + R+ + L G G GKTS LAK + Sbjct: 15 IPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPN-LLLYGPPGTGKTSTIIALAKQIY 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 + ++E++A+ + R+ + + + Sbjct: 74 -------------------QNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDK 114 Query: 119 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K+ ++DE ++ + AL + +E+ + +F ++ I SRC +F K Sbjct: 115 NTSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFK 174 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQV 232 + ++ ++++I E I +A++ + G +R +++ + S + Sbjct: 175 QISLDVASSRIKYICENESIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVI 234 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEAN--GERVMALINEAAARGIEWEALLVEMLGLL 289 ++Q V G D ++E ++ + + + + +GI + LL E+ L Sbjct: 235 NSQYVYQFTGMAHPDLIKQIMEYLMNQSEIQKTYLKIKTILNEQGISLQLLLTELSTQL 293 >UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepID=A9A308_NITMS Length = 316 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 127/337 (37%), Gaps = 32/337 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP ++VV Q ++ +L + + H LFSG+ GVGKT+ A +++ + Sbjct: 7 WVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPH-LLFSGSAGVGKTTTALCISRQILG 65 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--FKV 122 + T +E++A+ + R+ + FK+ Sbjct: 66 DYAKDYT-------------------LELNASDERGIGMVREKVKKFSRYAGMADVPFKI 106 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE ++ + AL + +E+ + +F+L + K+ I SRC F A+ E Sbjct: 107 IILDEADEMTSDAQTALRRIIEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVPEED 166 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +LE I +E + + + L+ + +EG LR A++L + G +S V A G Sbjct: 167 VIKRLEEIAKKEKVKADKKGLKAIYDYSEGDLRHAINLMQATASLGS--ISEDNVKASAG 224 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAA 301 +++ + + E G+ L + A+ + Sbjct: 225 LTKTTDVDEVLKIALSGKVPEAREKMIELIKVYGMSESDFLKYL-----NSAVFKSKHDK 279 Query: 302 LGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRK 337 L + + I R L + + L Sbjct: 280 LSDILEIIAKYDYRILVGSNSEIQLSAMLAELAKVEN 316 >UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostridium perfringens RepID=Q8XHN4_CLOPE Length = 307 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 114/340 (33%), Gaps = 37/340 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G V + +S + HA+L G G+GK+ +A A + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKILGIPSQRE------- 53 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 VD++ + V+ R+++ P KV +I L+ + Sbjct: 54 ---------HVDIVHYKSEKASFGVDLVRNIIAEANKKPYECDRKVIIIHNGEKLTVAAQ 104 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLKT+EEP + ++ +++ + TI SRC L L E+I I + + Sbjct: 105 NALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEEINLY---ISKKYN- 160 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + L +EG + + + + +++ + Sbjct: 161 GIDDELNRTLISFSEGIPGR-------VDKFMNDDIFKDI---------RNTVIEMLKDI 204 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 E + ++ + E +L + + + L +RE+ Sbjct: 205 GHGKIEVPIKYSDKFYSMKGNEEEILETITIFARDSIIFKEIENNLSIINGDKIDDIREI 264 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A + + + + R L + + ++ L+ Sbjct: 265 ASNLSYNKLNRIIKVVNEARNNLKSNTNLWLTLDSMLISI 304 >UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4ECY2_9ACTN Length = 375 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 86/361 (23%), Positives = 135/361 (37%), Gaps = 30/361 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE V L N ++ GR HAYLF G G GK A LA+ CE CG CD+C Sbjct: 15 QERVRDFLTNAVASGRASHAYLFLGAPGAGKLDAAWALAQAFLCEQ----DGCGACDSCV 70 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LLD+V AP R + KVY+ID L ++ NA Sbjct: 71 RVARHTHPDVHYYTPESATGYLIAQTRELLDDVPLAPIRAKAKVYIIDRAEQLRANTANA 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----- 193 LLKTLEEPPE V F+L T + TI+SRC + + + + Sbjct: 131 LLKTLEEPPEGVMFILLGTSADVMLPTIVSRCQCVPFRLVSPTVAARAVSRATGQDLARC 190 Query: 194 -----------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I A + AR D+L D+A + AV A L Sbjct: 191 RMAVAVAGSPTRGIEFLKSAERQDARRQMVRAIDSLIAADEADVLSRAKSLIVAVKAPLA 250 Query: 243 TL---DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG---LLHRIAMVQ 296 + + + + +++ N+ E ++ + L+ + + Sbjct: 251 EVKSTQEKVLEQNADYLSRGALKQLEDR-NKRELNARERSGIMEALASARTLMRDVLL-T 308 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L A + + LA + + + + ++ +E+ L Sbjct: 309 LQDEAADVVNEDVRDTIGRLAAATNVAGATRALEAVATAERNIARNVTPQLAIEVMLFDI 368 Query: 357 L 357 Sbjct: 369 R 369 >UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime subunit n=8 Tax=Lactobacillus RepID=B3W9Y6_LACCB Length = 325 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 131/342 (38%), Gaps = 37/342 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ A + ++ +YLF G +G GK ++A +A L C+ PCG C C Sbjct: 10 QPKLVAQFARIIDRKQLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQCPECE 69 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ + ++ KV+D R L + G +V+++++ ++ + N+L Sbjct: 70 RILNHNHPDVMVVKTETQSIKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSL 129 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK EEP + +L T +L TILSR ++ D + +LE E Sbjct: 130 LKFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLE----------E 179 Query: 200 PRALQLLARAAE---GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 A +AR A G++ DA +L A A+ +V+ + L+E + Sbjct: 180 GGATSQMARVAGRLTGNVADAQALL--ASATFQDRVT--------------KVFQLLERL 223 Query: 257 VEANGERVMALINEAAARGIE---WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + E + + + + +L + + + + Sbjct: 224 ADHDPESFVRVQTQLLPIAKDADSQRQVLALIGLAYADALNQHF---QVTSMQQLDLPAI 280 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 LA+ + Q +L + L + E +L+ Sbjct: 281 GVLAQR-SSEQLTTALQAILTAQVRLSQNVTFQSATEQLMLK 321 >UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sphingobacteriaceae RepID=C6XXP7_PEDHD Length = 382 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 125/383 (32%), Gaps = 72/383 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ GQE+V L ++ RI HA LF G G +A A+ +NC Sbjct: 1 MQFKEITGQENVKQQLLQTVAENRISHAQLFLSCDGSGALPLAIAYAQYINCLDKQENDS 60 Query: 73 CGVCDNCREIEQGRFVDLIE---------------------------------------- 92 CG+C +CR+ E+ DL Sbjct: 61 CGLCSSCRKYERYIHPDLHFSYPFFASKDVKTAVDVLEEWRSMLLADAYFDIDIWRSKLN 120 Query: 93 -IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 + + + + D++ + Y KV ++ L + NALLK +EEPP++ Sbjct: 121 AENKQANINIAECHDIIKKLSYKAFEAHTKVLIMWLPEYLDKEG-NALLKIIEEPPQNTL 179 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 F+L + +++ T+LSR + L + + L E + A+ Sbjct: 180 FILVANNQEQILSTLLSRTQIVKIPKLSHATVENYLM-----EAHGLPENQATEYSFLAD 234 Query: 212 GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 G+L +A SL + + +D A + + G RV+ L Sbjct: 235 GNLIEAKSL--------------------VANIHNDNADKFADWLRMGYGNRVLDLAAFT 274 Query: 272 AAR----GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTDIQ 326 + L + L +++ L + + ++LA + Sbjct: 275 EQAAGWGRENQKNFLKYGISFLRECSLLLTGADDLVKLPSRVLETAKKLATHVLDLNMAD 334 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 L + + ++ Sbjct: 335 AIISELEQAHYHIERNANPKILF 357 >UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostridium RepID=A6LPM5_CLOB8 Length = 310 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 39/341 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G ++++ + N HA L G G+GK+ +A+ L+ + E Sbjct: 4 IIGHKNIIDNINNRRQKDSFSHANLIIGNDGIGKSIVAKYLSNQIIKERNG--------- 54 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + ++ V+D R+++ V P G KV ++ + L+ + N Sbjct: 55 ------VESVDIVRYSPNSNSFGVDDVRNIISEVNKKPYEGDKKVLILYKCDKLTVQAQN 108 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKT+EEPP V +L + + + TI SRC + L L+ E+I LE + + Sbjct: 109 ALLKTIEEPPRGVHLILLSDSLEVILDTIKSRCQIYRLTPLNKEEILSYLE---EKYNNL 165 Query: 198 HEPRALQLLARAAE--GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 E LA +A G++ D ++ D + L E Sbjct: 166 SEDDKKAALAYSAGIPGNVDR---------FFSDDKLRN----------LRDICIELFED 206 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 +V ++ + + LL +L + I +++ + +++ Sbjct: 207 IVSRQKGIILKYEELLKSAKEDKLELLNILLSYIRDILLLKELNDSELVVNFDKIYKIKN 266 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++R I + + + R + M + + L+ Sbjct: 267 ISRGISYKKLNSMLEYIKEARINFNSNTNYSMVISVLLMGF 307 >UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSK5_THISH Length = 321 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 134/338 (39%), Gaps = 45/338 (13%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCR 80 E L L+ GR+ HA L +G G+GK ++A LA C + PCG CD+CR Sbjct: 9 EDAYRQLLGRLAGGRLPHALLLTGPVGIGKRALAESLALAALCTAPGVEGAPCGHCDSCR 68 Query: 81 EIEQGRFVD---LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 D + + ++ V+ R+L + + + + G +V L+ ++ ++ N Sbjct: 69 LYRADTHPDLTRVTIPEDKTQIVVDQIRELSETMGLSRSMGAHRVALLWPAEAMNPNAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLKTLEEPPE +L + +P +LP TI SRC + E R L Sbjct: 129 SLLKTLEEPPERTLMILVSAEPSRLPATIRSRCQTLAVPLPPDEITRAWLA------GQG 182 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ-----ALSL 252 + + L A G+ A L ++ + A+LG L ++L Sbjct: 183 VQAGQVDALLCLARGAPLVARDLAEEGA--------LEQWHALLGDLSQLTRGKTGTVAL 234 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 E + ER++ + +IA+ + + A AA Sbjct: 235 AERWKAQDTERLIRWV----------------------QIALWESARIAFTGRAAAGRED 272 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ LA+T+ I L R+ + +M +E Sbjct: 273 LQPLAKTLDLGRIFQLQDRLTEWRRLARTTVNPQMLLE 310 >UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=C0W271_9ACTO Length = 390 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 139/390 (35%), Gaps = 55/390 (14%) Query: 15 FADVVGQEHVLTALANGLSLGR------------IHHAYLFSGTRGVGKTSIARLLAKGL 62 + +VVGQE + AL R + HA+L +G G G+++ AR L Sbjct: 4 WDEVVGQEKAVAALQEAAVHARATLNGVETASRAMTHAWLVTGPPGSGRSTAARAFVAAL 63 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 C CG CD CR + D+ S +E+ R + N Q AP++G+++ Sbjct: 64 QCTHPQVIG-CGECDGCRHVMAKTHPDVTDFATEKSIISIEEVRAFMHNAQSAPSQGKWR 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V L+++ + + N LLK +EEPP ++L P+ L TI SRC Q +L+ V+ Sbjct: 123 VILLEDADRMQERTSNLLLKAIEEPPARTVWVLCAPSPEDLITTIRSRCRQVNLRIPPVK 182 Query: 182 QIRHQLEH--------------------------ILNEEHIAHEPRALQLLARAAEGSLR 215 Q+ L I + E + ++ + ++ Sbjct: 183 QVAQLLMRRHGVSYEDAYQAAALAQSHIGIASKLITDPEKLHDRYTQIESILDI--DNIG 240 Query: 216 DALSLTDQAIASGDGQVSTQAV----------SAMLGTLDDDQALSLVEAMVEANGERVM 265 DA+ ++ + V LG D ++ + + + E Sbjct: 241 DAVFYVEELLKENKENVEKDLATRNAREEAELKRTLGLNDTERIPPALRSQLTQLQEEQK 300 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + A ++ LLV +L + ++Q + + +AR D Sbjct: 301 RRVTRATKDPLD--QLLVNLLSFFRDVMVIQ-TGMNHPPINQGYVNLLENVARGSTLADT 357 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + RK L + E + Sbjct: 358 YRKVTAIETARKRLQTNTSINLVFEALIAD 387 >UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit (HolB-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH60_9BACT Length = 370 Score = 164 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 67/377 (17%), Positives = 125/377 (33%), Gaps = 63/377 (16%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + GQE+ L L + RI AYLF G+ GVGK + A +NC PCG CD Sbjct: 5 IKGQENALELLDKAIENDRIAQAYLFYGSDGVGKFTTALYFGMAVNCLATSELKPCGECD 64 Query: 78 NCREIEQGRFVDL----------------------------------------IEIDAAS 97 C + Q D A+ Sbjct: 65 ACHKFLQLEHPDFVYLFPTPNLNLSVEGEIKNTDAQKSYEAYLQNKINTPWKDFFFKDAT 124 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 + E L ++ + ++++ +I++ M++ + NA LKTLEEPPE +L T Sbjct: 125 EIRKESITLLNKRLELSIHEAKYRIVIIEDADMMNNATANAFLKTLEEPPERTIIILITE 184 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 + TILSR + K L I L + + +R G+L+ A Sbjct: 185 RLPLILPTILSRTQPVYFKPLTRGVIEEILIN-----EFEINSALARSASRICAGNLKTA 239 Query: 218 LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 + IAS +S+ + ++ L +E ++ + + + Sbjct: 240 IR-----IASESESLSSNWAFEIFSLAAEENDLGYLELAERYKKQQTIDQVIDLLKY--- 291 Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR-TIPP-TDIQLYYQTLLIG 335 + ++ L + ++ +A + + + L Sbjct: 292 IRIIASDLGSL--------STNPDSEITNIDKLDFLKPIAEANLGIDDRLYDFLLFLEDL 343 Query: 336 RKELPYAPDRRMGVEMT 352 +++ + + + Sbjct: 344 NRKVEGYANLNLVLTNL 360 >UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBK8_9ACTN Length = 381 Score = 164 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 144/373 (38%), Gaps = 38/373 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V LA ++ GR HAYLF G+ G GK A LA+ L C + C CD+C Sbjct: 17 QPRVRDFLARAVTSGRASHAYLFLGSPGSGKLDAAWALAQALLCGEDGVSGACASCDDCG 76 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LL++V AP R + KVY++D L ++ NA Sbjct: 77 RVARRTHPDVHYFAPESATGYLIAQTRELLEDVALAPIRAKAKVYIVDRAEQLRANTANA 136 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP V F+L + + TI+SRC + L +E + EH Sbjct: 137 LLKTLEEPPAGVTFILLGSSADAMLPTIVSRCQCVPFRPLSLEDAATAV------EHATG 190 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV- 257 P +A A GS A+ + +AV +L D+ L+ + ++ Sbjct: 191 LPAGKCRMAVAVAGSPARAVEFLKSGDRQTARRAMVRAV-DLLAHADEADILAAAKDLMG 249 Query: 258 ---------EANGERVMALINEAAARG---------------IEWEALLVEML---GLLH 290 ++ + V+ + +RG E ++ + LL Sbjct: 250 AIKAPLAEVKSTQQAVLEQNQDYLSRGALKQLEDRNKRELNARERSGIMEALASVRSLLR 309 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + +L+ + + + +A + T + + + ++ +E Sbjct: 310 DALV-RLASESEPVVNEDVSDVVERIAARVTVTGVTRALDAVSSAEARIARNVTPQLAIE 368 Query: 351 MTLLRALAFHPRM 363 + L Sbjct: 369 VMLFDIRKALQCP 381 >UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermanella marisrubri RepID=Q1N4U3_9GAMM Length = 328 Score = 164 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 130/335 (38%), Gaps = 34/335 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L+ LS R+ HA L +G +GVGK + A+ + C G TPCG C +CR G Sbjct: 15 QTLSQQLSSQRLGHAVLLTGQQGVGKRVFLKEFAQLVLCHQGEQQTPCGECASCRLFTAG 74 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D I ++ K++ R + D V ++G+ KV L+ +++ ++ NALLK+ Sbjct: 75 NHPDFITVEPEETGKAIKIDQIRRVTDFVNTTASQGQRKVVLLGPAEVMNINASNALLKS 134 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP V LL + P +L TI SRC Q+ + L+ E Sbjct: 135 LEEPSSQVTMLLYSHQPSRLLATIKSRCQQYSAPTPKFQDGLMWLQQNSQESG------- 187 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L L R A+G+ + + +Q + Q M + Sbjct: 188 LDSLLRLAQGAPLKVIEMIEQDVHVQY----MQFCQDMQDLANHSVVWQ----------- 232 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 ++++ +E+ LL GLL + + ++ + ++ + Sbjct: 233 ---GVVSKWKNWSVEY--LLDWFYGLLLDVQRCKSGVQDRLIPELNMQTELV--SKRMSV 285 Query: 323 TDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLLR 355 + + +K + P+ + +E L+ Sbjct: 286 AEADGILSAIYESKKAVVSGSNPNPTLLIERLLVD 320 >UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronobacter RepID=C9Y1I8_CROTZ Length = 342 Score = 164 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 121/342 (35%), Gaps = 44/342 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + RP +F +VG GR HHA L G+G ++ L++ Sbjct: 8 MKWYPW---LRP-SFEHLVGN----------WQAGRGHHAVLIHALPGMGDDALIYALSR 53 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPAR 117 C+ CG C C+ ++ G D + + S ++ RD+ + + Sbjct: 54 WRMCQQPQGQKSCGECRACQLMQAGTHPDYYQAEPEKGKSTLGIDAIRDISEKLYDRARL 113 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G KV I E L+ + NALLKTLEEPPE+ FLL +P++LP T+ SRC +HL Sbjct: 114 GGAKVVWIKEAAQLTEAAANALLKTLEEPPENTWFLLGCREPEQLPATLRSRCFSWHLAP 173 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + L I EP + R G+ AL L + Sbjct: 174 PETRYAEAWLAR-----EIQAEPSRINAALRLTGGAPAAALELLQPEQWQQRVALGE--- 225 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + A+ + ++ +N + L + L + Sbjct: 226 -------------KITAALTSGDWLSLLPALNH-----EQAPFRLHWLAAFLMDALKWRH 267 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 A + + +LA+ P Q +L R L Sbjct: 268 GAQAAL-VNTDYPVLVAQLAQRFSPAVTQAMLDSLFRCRDRL 308 >UniRef50_C9KPY4 Replication-associated recombination protein A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPY4_9FIRM Length = 462 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 123/311 (39%), Gaps = 54/311 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ LAR+ RP+ F + VGQ+ + L + + +I + +F G G GKT++A+++ Sbjct: 38 TFEPLARRMRPRNFDEFVGQQEAVGRGHFLRRMIEMDQIP-SIIFYGPPGTGKTTLAQMI 96 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A + E A + D R ++ A Sbjct: 97 AAMTDSA-------------------------FEKLNAVSAGISDLRRIVKEADEARRYY 131 Query: 119 RFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 + + + IDE+H ++ + LL +E+ + + ATT+ ++ +LSR L Sbjct: 132 QRRTIVFIDEIHRFNKSQQDVLLPYVED--GRLILIGATTENPFFEVNHALLSRVRIVRL 189 Query: 176 KALDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS- 227 L Q+ L L +E H+ L +A+ A G R AL+L + A A Sbjct: 190 YQLTDAQLVEVLRRALKDEERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLLEGAAAML 249 Query: 228 --GDGQVSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARG 275 G V+ + + G D A + +++M ++ + + + A G Sbjct: 250 PTTGGTVTLDMLEEITGERVQRYDKTGDNHYDTASAFIKSMRGSDPDAALHYLARMLAAG 309 Query: 276 IEWEALLVEML 286 + + + ++ Sbjct: 310 EDVKFIARRIV 320 >UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication factor C subunit 4 n=2 Tax=Coelomata RepID=B4DM41_HUMAN Length = 303 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 103/260 (39%), Gaps = 29/260 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 121 ------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +++ Sbjct: 199 FKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEIT 258 Query: 234 TQAVSAMLGTLDDDQALSLV 253 + ++ + G D + Sbjct: 259 EKVITDIAGVRVLDILNFFL 278 >UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZZ4_9PLAN Length = 353 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 138/354 (38%), Gaps = 33/354 (9%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PC 73 + G +L L LS R+ HA LFSG G+GK +A LA+ L C C Sbjct: 6 DSIRGHHPILEMLDRALSRSRLPHALLFSGAAGIGKKRVALHLAQCLFCLQTPADELSCC 65 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD------------NVQYAPARGRFK 121 CD+C+++ G DLI I+ + ++ + P G + Sbjct: 66 RTCDSCKQMAAGTHPDLISIECPPDKNILPLSLIIGDDDHRGREGVCYEMSLRPMVGDRR 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +ID+ ++ S NALLKTLEEP + +L ++ + TI SRC L E Sbjct: 126 IAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLIRFNRLTQE 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L ++++ + E +A++ +AR + GSL A L D+ + S G ++ L Sbjct: 186 DVAALL---IDQQLVESEDQAIE-IARLSAGSLNIARQLLDENLQSLRGNITR------L 235 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + Q + E++++ + + AA+ ++ H+ Q + A Sbjct: 236 LSRHPFQPQAFSESVIQ----AIDDVGGNTAAQRKTALWVIKFCADFYHQSL--QCAAAY 289 Query: 302 LGNDMAAIELRMRELARTIPPTDIQ---LYYQTLLIGRKELPYAPDRRMGVEMT 352 A I+ +L +++ + +E Sbjct: 290 QAAPTAGNVESFVAGLPGETEDRIETIGNLLSRMLQTEEQINQNVTLPLCIESL 343 >UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHI9_CELJU Length = 337 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 30/323 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA ++ ++ HA + +G RG+GK A LA+ L C+ CG C C + Sbjct: 17 QQLAQLIAARKLPHALMLAGPRGIGKRHFAEALAQLLLCQAPREGGACGQCRGCELNKAA 76 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL+ ++ KV+ R+L D + +KV +++ ++ ++ NALLK+ Sbjct: 77 THPDLLWLEPEEAGKAIKVDQVRELTDALGKTAQLSGYKVVVLEPAEAMNTNAANALLKS 136 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + +L + P + TI SRC + EQ+ L +L I + Sbjct: 137 LEEPAANTLLILVSHTPSAVLPTIRSRCQLRAMAMPRQEQVVRWLSPLLVGRDIPADE-- 194 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L AA G+ ALSL + Q Q LG L A+ L + Sbjct: 195 ---LLSAARGAPLIALSLLEGDALEQREQQLQQLTRMSLGQLS---AIELAANWHTGDAP 248 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 +M LG LH +A + +RE + + Sbjct: 249 GLMEWF-----------------LGFLHTLARWRAGVDDPQA--QRWPTELRERLQGVEL 289 Query: 323 TDIQLYYQTLLIGRKELPYAPDR 345 + + Y + +L ++ L + Sbjct: 290 SLLHRYLEKVLHAKRLLLSGANP 312 >UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Corynebacterineae RepID=C4LLH9_CORK4 Length = 452 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 137/382 (35%), Gaps = 51/382 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 + HA+LF+G G G++ A+ A L C+ CG C+ CR G D+ Sbjct: 76 AHQSAHMTHAWLFTGPPGAGRSVAAKAFAASLMCKEETPG--CGQCEACRTALAGTHTDI 133 Query: 91 IEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + I V+ RD+++ P +++V ++++ L+ NALLK++EEPP Sbjct: 134 VTIVPEGVVIPVKQVRDMIEAASRMPTTAQWRVVIVEDADRLNDAGANALLKSIEEPPPR 193 Query: 150 VKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 F+L +TDP + VTI SRC ++ +++++H L ++ + + + A Sbjct: 194 TVFILCAPSTDPDDVHVTIRSRCRHVYIPTPSIDEVKHIL---ADDTALGLTDKQIDWAA 250 Query: 208 RAAEGSLRDALSLT--DQAIASGDGQVST-QAVSA---------------------MLGT 243 + G + A L DQA + + V Sbjct: 251 SVSGGHVGRAKRLASDDQARTQRQRALRVPEKVYQDGDAYLYTGELVASAKKEAEAATAE 310 Query: 244 LDDDQALSLVEAM-----------VEANGERVMALINEAAARGIEWEAL------LVEML 286 D+ + L EA+ + M + + L+++ Sbjct: 311 RDEAELAKLREALGVGAKGRGAAKAQRGSAGAMKELETKQKNRRTRMVIDLLDLSLMDIA 370 Query: 287 GLLHRIAM--VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 GL M V + ELAR P + + +GR+ L Sbjct: 371 GLYRDALMVSVNAGGGRVPAIHPDHANTAAELARRNTPEQLLQCVDAVRMGRELLASGVR 430 Query: 345 RRMGVEMTLLRALAFHPRMPLP 366 + ++ + R P+ Sbjct: 431 QEGALDAMVGRLRQICVTGPVD 452 >UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aeromonas RepID=A0KKI0_AERHH Length = 315 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 113/320 (35%), Gaps = 34/320 (10%) Query: 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 86 AL+ + GR+ HA+L G G+GK +A LA+ C PCG C +C+ E+G Sbjct: 11 ALSQTAAAGRLGHAWLLLGDPGLGKEQLAEQLARLHLCHRPERGEPCGQCHSCQLFEKGH 70 Query: 87 FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 DL + S+ VE R++ +Q + GR KV +I + ++ + NALLKTLEE Sbjct: 71 HPDLGTLTTESKTIGVEAIREICSRLQNSAQLGRGKVVIIPDAERMTESAANALLKTLEE 130 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P LL + +L TILSRC + + + L ++ A Sbjct: 131 PAGDSLLLLIASQVSRLLPTILSRCHKHVCQLPAEGETVRWLAEQGHQ--------ATLA 182 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 R +G+ L ++ S + ++ + L+ + Sbjct: 183 QVRICQGAPLRVLRYIEEQQDSARRDLLESFLALAQTPTRANHVCGLLAS---------- 232 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + + L + L Q M + +LA + Sbjct: 233 -----------DTQVRLHWLQLFLCDALKTQAGCGHHQLAMPDLTALSLQLAELHSSEKL 281 Query: 326 QLYYQTLLIGRKELPYAPDR 345 EL A Sbjct: 282 LEA----EQQLVELKMACQP 297 >UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=Alcanivorax RepID=Q0VQM5_ALCBS Length = 335 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 35/338 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + L + + GR+ HA L SG +G+GK +A LA+ L CE PCG C C+ Sbjct: 15 HSDAMAQLLDQHARGRLPHALLLSGPKGIGKLRLAESLAQTLLCEKPSAGLPCGHCQGCQ 74 Query: 81 EIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G DL + + K++ R L+ ++V +I L+R++ N Sbjct: 75 LSTAGTHPDLYRLSPEEKSKTIKIDQVRKLVAFATRTAQYSGYRVAIISPAEALNRNAQN 134 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEP LL + P L TI SRC Q L E L+ + Sbjct: 135 ALLKTLEEPGTQTLLLLVSDQPTLLLPTIRSRCQQRILPLPVKEHALQWLQSQVG----- 189 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + L AA+G+ AL+L + ++ V G + Sbjct: 190 ---ESAASLLDAAQGAPLRALALEQAEWFADRTRLLDTLVRVAEG---RQSVAQASPVLA 243 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + + ++I +R + + + A + + L Sbjct: 244 KHDPTEMASVIYGWLSRSLNQRF-------------------SGQQSSDALLAPLLERLN 284 Query: 318 RTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTL 353 + +PP + Q +L GR+ L P++ + E L Sbjct: 285 KAVPPARLLRAAQRVLEGRRALLSGANPNKELLYEQWL 322 >UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma gondii RepID=B6KT76_TOXGO Length = 398 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 119/330 (36%), Gaps = 23/330 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +DV+ + ++ + N + G++ H LF G G GKTS +AK Sbjct: 35 LPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPH-LLFHGPPGTGKTSTILAVAKEFY 93 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR---- 119 T + R I R + +S T + R + Sbjct: 94 GSAVRTHVLELNASDDRGINTVREQIKTFAETSS-TSFQQNRLIFGKSAVPATEAAEATS 152 Query: 120 -------------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 K+ ++DE ++ + NAL + +E +V+F L K+ I Sbjct: 153 SHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAI 212 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-I 225 SRC F + ++ + I+ +E + L L + A G +R L+ + + Sbjct: 213 QSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALVKIARGDMRRLLNCMQASHL 272 Query: 226 ASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 A +V+ V LG + ++ E ++ A+ ++E + + Sbjct: 273 AHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCKELDELVTAK---GYAMRDW 329 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + H ++ PA + + + E Sbjct: 330 VIAFHERILLVDWPANVLITFVSRLADLEE 359 >UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFU2_KYTSD Length = 394 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 142/399 (35%), Gaps = 50/399 (12%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ +VGQE + LA ++ R+ HAYLF+G G G+++ AR A L C G C Sbjct: 6 WSALVGQEELAEGLAQAVADPRRLTHAYLFTGPPGSGRSTAARAFAAALLCPDGG----C 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR G D+ ++ V + RDL + P+ G +++ +I++ L+ Sbjct: 62 GSCRECRSALDGTHADVEVVNTEGLSISVRNARDLAMAAAHHPSVGAWRIIVIEDADRLT 121 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE---- 188 + +ALLK LEEP ++L PQ + VTI SR L+ V+ + LE Sbjct: 122 EQAADALLKALEEPSPRTIWMLCAPSPQDVIVTIRSRSRHLSLRTPPVQAVAELLESQGV 181 Query: 189 --------HILNEEHIAHEP--------------------------RALQLLARAAEGSL 214 + HI AL+ A E + Sbjct: 182 DAAMAAYAARAAQSHIGVAKWLARDEAARARRHRVTRIPAELTGLGSALRQAATLHEVAT 241 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 +A + +Q + ++ + S + + + R + + R Sbjct: 242 SEAKAEAEQKDVAEREELLRLNGADPAARTQPPAIRSQLNQLAKEQKARATRRVRDVIDR 301 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 LV++ + ++ + + + +LART ++ + + Sbjct: 302 ------TLVDLASVYRDALLLAVGAGQIELVNPQNVAELEQLARTTSADNLLCCLEEIDR 355 Query: 335 GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQ 373 R + + +E L+ R+ Sbjct: 356 ARTRIAENVMPLLALEAMLVSLGGLQSDAGRAGAREGRR 394 >UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R923_WEIPA Length = 334 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 130/340 (38%), Gaps = 27/340 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q ++ L L+ ++ HA+LF+G G G+ +A LA L C+ P G CD C Sbjct: 14 QPQLIAQLQKALASQQLAHAFLFTGPAGRGQELVADWLAMRLMCQHVTADGQPDGTCDQC 73 Query: 80 REIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I Q D+IE KV+ R L + G+ K++++ ++ + N Sbjct: 74 QRIVQHEHPDVIEVHPDGKSIKVDQVRFLKEEFTKTAVEGQQKIFIVAGADTMTTSAANG 133 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP +L + ++ TI+SR A+ EQ +L + + Sbjct: 134 LLKFIEEPAPGQTAILIAENRAQILPTIISRTQVIAFAAVGNEQFEEEL------LSLGY 187 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + L+ + S A Q ++ VSA+L + DQA +LV+ + Sbjct: 188 HADEVSLVQSLTD-SKVVAEEWLIDDWFRQATQATSSLVSAIL--KNSDQAFTLVQTLY- 243 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + + + LL+ + I +++ + + Sbjct: 244 --VPLALDIAHG--------KTLLMMLAQAWRDILLLKTGVQ-----NSHFANDWSREVQ 288 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + +L ++L + + +E T+L + Sbjct: 289 RFDTKTLLAVINIVLSAPQQLEKNINFQTTLEATILESQF 328 >UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, holB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCA3_PARUW Length = 369 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 71/378 (18%), Positives = 138/378 (36%), Gaps = 45/378 (11%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P +F+ +VG + + L L I ++ LF+G GVGK A LA L CE Sbjct: 5 PSSFSFLVGNDPIKIYLQRMLIKKAIGNSLLFAGPNGVGKGLFAYALASQLICEQEEKNK 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 +IE G D+ + ++ R+L + V P +K+++I + Sbjct: 65 --------YKIENGLHPDIHIYRPEGKLGLHGIQSLRELSEEVHLPPYEASWKIFIIHDA 116 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N LLKT EEPP +L + L TI+SRC H + + +I L Sbjct: 117 ERMLSVSANTLLKTFEEPPPKTVIILLSQSQAALLPTIVSRCRTLHFQPIHASEIEKVLV 176 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDA---------------LSLTDQAIASGDGQVS 233 E + E Q +A ++GSL A L+ Q + + + Sbjct: 177 -----ERMYLETEFAQNIASLSQGSLGRAVQLIQKKGDESRIFLLNTLSQLPLTSYKEFT 231 Query: 234 TQAVSAMLGTL-------DDDQALSLVEAMVEANGERVMALINEAAARG------IEWEA 280 Q V ++ + ++ ++ E + + + E+ Sbjct: 232 -QIVGELVAQIELSKKLFEEKAKEEFLKLFSEQLSTAHQQHLEKEIEGRCTQIFLQDVES 290 Query: 281 LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 L ++ + ++QL+ + + ++ + +++ +++ R L Sbjct: 291 LFDQLFAWYRDLHLLQLTQNKSLLIHSDYAESIEQILQRGNLLPLEIVQKSIEEARLSLQ 350 Query: 341 YAPDRRMGVEMTLLRALA 358 + + +E L+ Sbjct: 351 RSTSLNICLENLFLKLAW 368 >UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rhodopirellula baltica RepID=Q7UK75_RHOBA Length = 376 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 126/344 (36%), Gaps = 38/344 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 +++ D++G + ++T L + GR+ + LF G GVGKTS A LL + L CE Sbjct: 28 KSWNDLIGHDALITGLTAAIRQGRLGGSLLFVGPNGVGKTSAAILLTQTLLCERSTARDM 87 Query: 72 -PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL------------DNVQYAPARG 118 PCG C +C ++ G D I++ + L+ +V P + Sbjct: 88 APCGECPSCVQVRVGTHPDFIQVRKPDDKTLIPLELLIGPVDARLQEGFCHDVHLRPMQA 147 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + KV ++ + L+ N LLKTLEEPP + +L + Q+ TI SRC + Sbjct: 148 QRKVAILHDADFLNEEGANCLLKTLEEPPANALIILIGSSEQRQLPTIRSRCQVLRFQTP 207 Query: 179 DVEQIRHQLEHILNEEHIAHEPR--------ALQLLARAAEGSLRDALSLTDQAIASGDG 230 E R L L+ HE AL + G + A L G Sbjct: 208 PGEAGRALLRKQLDHYQSQHEEESLPTMSDDALDAAIELSAGDMHVAARLAR----GGGE 263 Query: 231 QVSTQAVSAMLG-TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 Q+ + + D + L+ + + + + + A + ++ + Sbjct: 264 QIREALWNQLAAPVPDPTAIVRLI----NGHLDSISKDVPKRRAALRDVFSIA---VQHY 316 Query: 290 HRIAMVQLSPAALGNDMAAIELR----MRELARTIPPTDIQLYY 329 R S R RE+ R+ + Y Sbjct: 317 RRQLRSDASSGEYDPATHRRLDRTLRTFREIDRSANLGTLVDCY 360 >UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusobacteriaceae RepID=C7NB61_LEPBD Length = 409 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 128/299 (42%), Gaps = 43/299 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA ++RP++ D GQ+ ++ L + G +A +F G G GKT++A +++ Sbjct: 12 KPLAFRYRPKSLDDFYGQKRLVGENGILRKIIERGNFMNA-IFWGAPGTGKTTLAEIISN 70 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGR 119 +N E A + V D +++ + G+ Sbjct: 71 KMNYH-------------------------YEYLNAIKASVADIKEISEKAANRFHMNGQ 105 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DE+H ++ ++LL+ LE ++ + ATT+ L +LSRCL F K Sbjct: 106 QTLLFLDEIHRFNKLQQDSLLQDLEN--GNIILIGATTENPYYNLNNALLSRCLAFEFKK 163 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L + + L++I +E+ L+ ++ EG R A+++ + I + + + + V Sbjct: 164 LSEKNLMEILKNINEKENFGISDDILEYISEIIEGDARQAINILE-LITNVGVEFTLEEV 222 Query: 238 SAMLGTL--------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +L T + ++++++ ++ + + + + + G + + ++ L Sbjct: 223 KEILNTKKSYHKTEDKYNTISAMIKSIRGSDPDATVYWMAKMLSGGEDILYIARRLVIL 281 >UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BV86_9GAMM Length = 334 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 120/339 (35%), Gaps = 38/339 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 + + + + + R+ HA L SG +G+GK A+ LA+ L CE CG C C Sbjct: 8 HDALWQQIQSRVMQNRLPHALLLSGPQGMGKALFAQRLAENLLCEQPQADGQTCGHCKPC 67 Query: 80 REIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + DL +++ + V R+L+ + R ++ +++ ++R++ Sbjct: 68 HLLLANTHPDLFKVEPVEAGKQISVNQIRELIQFSTLTASYNRHQIIIVNPAEAMNRNAA 127 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL-EHILNEEH 195 N+LLK LEEP +L + Q L TI SRC + + + L + + + Sbjct: 128 NSLLKLLEEPSSDTVIMLVSHQYQALLATIRSRCQRIDFSHPEPTVTQTWLHNQLSTKIN 187 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 I L+L++QA + T G + Sbjct: 188 IQL------------------LLNLSNQAPLAALALAQTD------GMAKRQILFESLTQ 223 Query: 256 MVEA--NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + R+ N+ E +L ML I ++ + + Sbjct: 224 LPTGKDDPIRIAESWNQL-----EVVQVLEWMLLWTMDIIRYGITEQRHSIINQDHQQTL 278 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPD--RRMGVE 350 + LA+ P + + + + + + +E Sbjct: 279 QRLAKQFNPLKLFELLDLQTEAYRLIMGSTNVKPQGLLE 317 >UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Corynebacterium RepID=C8NKG7_COREF Length = 417 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 78/418 (18%), Positives = 150/418 (35%), Gaps = 81/418 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGR----------------------IHHAYLFSGTRGVG 50 + F ++ V+ L + + R H++LF+G G G Sbjct: 8 RVFDNLASPPAVVQTLIDAATTARQIARDGGAGAGAGDAGTARDSTFTHSWLFTGPPGSG 67 Query: 51 KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID-AASRTKVEDTRDLLD 109 ++ AR A L C + CG C++CR D++ I ++ R ++D Sbjct: 68 RSVAARAFAAALVC-SDPDEVGCGRCEHCRATLADTHGDVVFIQPHELSIGIDLMRTVVD 126 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTIL 167 + P ++V +++ L+ + NALLKT+EEPPE +L +TDP+ + VT+ Sbjct: 127 DAARLPTVSNWRVIILENADRLTEPAGNALLKTVEEPPERTIIILCAPSTDPEDIMVTLR 186 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC ++ Q+ IL E E A +L A ++ G + A L + + Sbjct: 187 SRCRHVYIPTPT----IEQVTRILVSEGGVAEDDA-RLAAASSGGHIGRARHL----VHN 237 Query: 228 GDGQVSTQAVSAMLGTL-DDDQALSLVEAMVEANGERVMALINEAAARGIEW-------- 278 QV + + + DQA V ++++ + ++ + + E Sbjct: 238 QKVQVRRANILNLSELIFHGDQAFQAVNSLIKGIEKEMVETLEPLEEQEREKLETSLGMG 297 Query: 279 ------------------------------------EALLVEMLGLLHRIAMVQLSPAAL 302 + L+++ G+ +V S A + Sbjct: 298 SRGKGVHKALQGTGGQLKALEDNQKKRRTRFLRDALDLALIDLAGIYRDALVV-ASGAEV 356 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 G +E ELA + P + + R+ + ++ + R + Sbjct: 357 GLTHPDMEGLSTELATKVTPEGLLDCLDAINKSREYFGQNVRPVVAMDALVGRLRKAY 414 >UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FP94_PHATR Length = 350 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 33/297 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++RP++ +V Q V+ L N ++ GR+ H L G G GKTS+A L + L Sbjct: 16 RPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPH-LLLYGPPGSGKTSVALALCRQL- 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR--- 119 ++E++A+ + R+ + A+G Sbjct: 74 -----------------WHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDM 116 Query: 120 -------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 FK+ ++DE ++ + AL + +E + +F+L ++ + SRC + Sbjct: 117 ENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAK 176 Query: 173 FHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA--IASGD 229 F ++L ++ +LE I NE++ E L + A+G +R A++ +A+G Sbjct: 177 FRFQSLPPSSMKARLEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGG 236 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 +V A++ + G L A++ + + + ++ +A G + LL ++ Sbjct: 237 AKVDKAALAEIAGLPPPAIVDMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSALV 293 >UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KER2_ELUMP Length = 320 Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 75/366 (20%), Positives = 117/366 (31%), Gaps = 64/366 (17%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET---GITAT 71 F D++GQE + L ++ GRI A LF G +G GK A+ A LNC Sbjct: 2 FRDILGQEKTINQLKKFIASGRIPQAMLFYGPKGTGKALTAKKFAMALNCTDEAARAEFD 61 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAA-------------SRTKVEDTRDLLDNVQYAPARG 118 CG C NC+ I D + D A +E RD+ Q Sbjct: 62 SCGTCLNCKNIIANTHPDFVWGDFAYQAGLTGKEVEKQQHMNIEAVRDMTTKSQQKIMTA 121 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV ++D + + NALLK +EEP + ++L + TI SRC L Sbjct: 122 RYKVLVLDHAETMLPDAANALLKFIEEPAANTVWILNCAKKDLMLSTIKSRCQAVPFAPL 181 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L + AR + GS A + V Sbjct: 182 KAKNVVDILTF------CGIDADLAARAARFSGGSAGKAREVI--------------NVL 221 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L D + E L A E +L LH + + Sbjct: 222 ENLNGADA--------SAETFPYEAAATLSRTLAQARGEAYVILDMAAQGLHDM----WT 269 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 I+ +++L+ R + + +E L+ Sbjct: 270 KEKDVQIKEKIKQTLKQLS----------------YYRYAVSRNVSPSLALETALMETGE 313 Query: 359 FHPRMP 364 F+ ++ Sbjct: 314 FNQQLF 319 >UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA20_CARHZ Length = 444 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 119/313 (38%), Gaps = 57/313 (18%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ + +GQEH+L L + R+ + +F G G GKT++AR++A Sbjct: 16 PLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLG-SLIFYGPPGTGKTTLARIIAST 74 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRF 120 E A + V + R+++ + G Sbjct: 75 TKSG-------------------------FESINAVTSGVGEIREVIKKAKEREKYYGER 109 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V IDE+H ++ +ALL +E + + ATT+ ++ +LSR F K L Sbjct: 110 TVLFIDEIHRFNKAQQDALLPEVE--AGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPL 167 Query: 179 DVEQIRHQLEHIL-NEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-- 229 + E IR + L ++E + AL L A G R AL+ + A+ + Sbjct: 168 EPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIELAVLTTPPD 227 Query: 230 ----GQVSTQ----------AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 +++ + V G D + ++++ ++ + + + G Sbjct: 228 EDGVRKITVEIIEQSMQKKAIVYDKEGDNHYDTISAFIKSLRGSDPDAAVYYLARMLEAG 287 Query: 276 IEWEALLVEMLGL 288 + + ++ Sbjct: 288 EDPRFIARRLIVH 300 >UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQC8_9BACE Length = 331 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 118/333 (35%), Gaps = 22/333 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + + G + L + + HAY+ SG G GK +++R+LA C G P Sbjct: 1 MNLSLLAGNAALKGQLEAQTARRGLSHAYILSGPAGAGKRTLSRVLAAAFVC-RGQGDKP 59 Query: 73 CGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+ G D+ I D V R L + P KVY+++ + Sbjct: 60 CLSCPDCRKAMGGIHPDISVIGDDGKDINVAQVRALRSDAYVRPNEAGRKVYILENAQTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA+LK LEE P + FLL T + L T+ SRC L + + L Sbjct: 120 NASAQNAMLKLLEEGPPYAAFLLLTDNAAALLQTVRSRCEVVTLSPVTQAEAEAWLSRRY 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 ++ A+ A+ EG L A++ + + A Sbjct: 180 PDK----SREAIVGAAQRCEGLLGRAVAELEGSSGGESQA--------------RAAAPE 221 Query: 252 LVEAMVEANGERVMALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + + +M + L E + LL +++ + G Sbjct: 222 LIARLSAGDELALMEFCISLEKWDRDSLSDLFSEGVLLLRHALVLR-TGGDCGEADPDRR 280 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + A+ + P + + L R + Sbjct: 281 AAAAKAAQALSPKALLVAVDVLEQLRASCAFNV 313 >UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=Halorhodospira halophila SL1 RepID=A1WSZ0_HALHL Length = 351 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 132/355 (37%), Gaps = 39/355 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVCDNCREI 82 L L GR+HHA L +G G+GK +A +LA+ L C+ PCG C C Sbjct: 28 LDRLLTLHDQGRLHHALLLTGRTGLGKRLLAGVLARALLCQADEGGGARPCGQCRGCHLT 87 Query: 83 EQGRFVDLIEIDAASR-----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G DL + +SR V+ R L+D + + RG +V +I L+R + N Sbjct: 88 GGGSHPDLRTLSPSSRGERGEIVVDSVRGLVDFLHLSAQRGGSRVAVIVPCDRLNRAAAN 147 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLKTLEEPP V +LAT P +LP T+ SRC L Sbjct: 148 SLLKTLEEPPPGVFLILATGRPGRLPPTVRSRCTVRGLTPP------------------- 188 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAMLGTLDDDQALSLVEAM 256 A + LA A G+ D+A+A G ++ + + G + L + + Sbjct: 189 AWDAARRWLAERAGGAEGRV----DKALALAGGMPLTAEQILHEQGLEGYESLLQQLHRL 244 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + EA A EAL + +L + + G + + ++ Sbjct: 245 SAGGDP-----VKEAEAWEGAPEALADAVTAILADLLRQRHGAPDRGLLPSPLAQQLVRE 299 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVP 371 A + + + R+ L + R+ E L A Sbjct: 300 A---SVEALHQAFLRIGEHRRGLEQPLNGRLAAEAIFLDLAAALRPARQSAARQA 351 >UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R593_9CHLA Length = 367 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 66/377 (17%), Positives = 133/377 (35%), Gaps = 48/377 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ + G + + L + I + LF+G G+GK+ A+ A+ L G Sbjct: 7 FSHICGNDPIKHYLIKMIEKNAIGQSLLFAGPEGIGKSLFAKAFAEILLTN--------G 58 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D ++++ DL + ++ R L + + P + + KV++I E + Sbjct: 59 SADQRKQVKAETHPDLHIYRPEGKLGMHSIDAMRQLTEEIYLVPYQAKRKVFIIHEAERM 118 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +S NALLKT EEP +L T+ P+ L TI SR + + ++ + + + Sbjct: 119 LPYSANALLKTFEEPALDCVIILLTSLPENLLPTIRSRFQTIYFQEVEKKYLVKFV---- 174 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV--------------STQAV 237 +E+ + Q +A +++GS A L Q + + V Sbjct: 175 -QENFQKTEQEAQTIAASSKGSFVQAARLCSQKKTYYQDILLPLLAAGRFSSYGALLETV 233 Query: 238 SAMLGTLD----------DDQALSLVEAMVEANGERVMALINEA--AARGIEWEALLVEM 285 + L+ + S +E + E + I E LL + Sbjct: 234 RQLTDQLEQSKKQVEEEMRQELSSHLENLTAVQKESLEKEIEGFVSVQTNRETTHLLDFI 293 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMR---ELARTIPPTDIQLYYQTLLIGRKELPYA 342 L + ++++ ++ + + +Q RK L + Sbjct: 294 LSWYRDLELIRVKGDPTFLFHKDAYNQLEQSIQQGNRLSIEHVQKAI---SDARKALERS 350 Query: 343 PDRRMGVEMTLLRALAF 359 + +E L+ + Sbjct: 351 SSIGITLENLFLKLHFY 367 >UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia intestinalis RepID=A8B3E2_GIALA Length = 321 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 29/260 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VV E ++ A+ + GR+ H +F G G GKT++ + L L Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPH-MIFYGKPGTGKTTLIKALMNEL- 59 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--------QYAP 115 ++E++A+ + V+ R + Q + Sbjct: 60 ------------------FGDAVSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSS 101 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + +FK+ ++DE +S + +L + +E +H +F L P+KL ILSRC F Sbjct: 102 SATKFKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRF 161 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV-ST 234 + E LE I + E + P AL + +G LR A+++ + ++ + Sbjct: 162 LPVPRESCLLMLEKIADAEGMQMAPGALAAIHAVTDGDLRQAINVLQSLHLMTEKELATA 221 Query: 235 QAVSAMLGTLDDDQALSLVE 254 V ++ L+ Sbjct: 222 DDVYKLVAKPHPALGRELLR 241 >UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Tax=Flavobacteriaceae RepID=C6X5R9_FLAB3 Length = 372 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 108/383 (28%), Gaps = 66/383 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ + L +S R+ HA LF G G G ++A AK + + Sbjct: 1 MNWDQIVGQKKIKHLLTESISDNRVGHAQLFLGADGYGTLALAMAFAKEILKKENE---- 56 Query: 73 CGVCDNCREIEQGRFVDLIE--------------------------------IDAAS--- 97 +C ++ +DL D + Sbjct: 57 ----HSCSKVAHLNHLDLHFSFPVFKEKSSGLSSNFAEEFREMVLNNPYSDNEDWSRILE 112 Query: 98 ------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 ++ + G K+ ++ + ++ + N LK LEEPP+ Sbjct: 113 SENKQLTIYADEIDQVNQKFALKSFEGGSKILIVWQADKMNISAANKFLKFLEEPPKDTF 172 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 +L + + TILSR + +D + I L+ + + A+ Sbjct: 173 IILTAENGDSILPTILSRTQLVEIPRIDDKDIEEFLKKT-----YDISEEKISEIVFQAQ 227 Query: 212 GSLRDALSL-TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 G+ A L ++ V ++ + V+ N Sbjct: 228 GNWNTAQKLMLSDDSDDEFEKLFVLWVREAFQVKKKP---QFLKNI-------VLWGRNI 277 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI-ELRMRELARTIPPTDIQLYY 329 A + + L + + L R ++ I +I+ Sbjct: 278 AVWNREKQKNFLHYCAEMFRLALLQNYGNENLVYKKIDSGGFRWDSFSKYIHGANIEAIL 337 Query: 330 QTLLIGRKELPYAPDRRMGVEMT 352 + L + ++ Sbjct: 338 NEISEADYHLERNANPKIVWTDL 360 >UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V935_NOSCE Length = 310 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 114/275 (41%), Gaps = 29/275 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP++F +V G + V+ L + R+ LF G G GKT+ R+++ Sbjct: 1 MS-IPFVEKYRPKSFDEVEGNQEVIVCLK-AIQESRVIPNMLFYGPPGTGKTTSIRIISN 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L + ++E++A+ + R+ + + Sbjct: 59 SLPNTS-----------------------VLELNASDERGISVVRETIKEFA-STYSNTI 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DEV ++R + NAL + +E+ +F L P+K+ I SRC +F + + Sbjct: 95 KLVVLDEVDFMTRDAQNALRRIMEDFSSTTRFCLIANYPKKIITPITSRCSKFRFNPVKI 154 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 R + I +E+I E + L + + G +R ++ QAI G ++ + V Sbjct: 155 F--RKSVLEICKKENIEVEYTGIDFLMKTSYGDMRRVVNDI-QAIGKSFGIINQETVLKF 211 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 L ++ + + + + + ++ + Sbjct: 212 NSMLSTEEFKEIFDWFLCKSYDALLRDLESIKETK 246 >UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=Gammaproteobacteria RepID=Q2NU34_SODGM Length = 332 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 119/335 (35%), Gaps = 31/335 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 + HHA L G G+ + L++ L C + CGVC +CR + G Sbjct: 12 RQILARYQQASGHHALLLHSQPGNGEAPLCYALSRWLMCRQPDGSKSCGVCHSCRLMMAG 71 Query: 86 RFVDLIEIDAASRT---KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D + + V++ R ++D+V +G KV + +L+ + NALLKT Sbjct: 72 NHPDFYQPEPEKGRQSLGVDNIRAIIDSVYGRARQGGVKVVWLPHAELLTEQAANALLKT 131 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPP FLL P +L T+ SRCL + L A D L ++ + Sbjct: 132 LEEPPTDTYFLLGCQTPSRLLPTLRSRCLYWPLPAPDEALGLRWLRQAGFDDPL------ 185 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 S AL L A + + + L +L EA V + Sbjct: 186 ----------SACTALRLCANAPLAAEALLQPGRWQERLALC-----AALYEAHVSGDF- 229 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + L+ + L +L LL Q A A + LA P Sbjct: 230 --LTLLPVLNWYKKDDGP-LYWLLSLLTDALKWQQGAQASL-VNADRAELVAALAARWPA 285 Query: 323 TDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLR 355 + +Q L ++ +R + + LL Sbjct: 286 GVLHAQWQLWLQCLRQWQEISGVNRELLLTHYLLN 320 >UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subunit n=13 Tax=Lactobacillus RepID=B2GAE3_LACF3 Length = 346 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 68/353 (19%), Positives = 115/353 (32%), Gaps = 29/353 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNC 79 Q + A+ + G + HAYL G +G ++A +A L C P C C Sbjct: 11 QPEITARFASLIERGTLAHAYLLVGNVNMGTVALATEVALRLFCPHQDDQGHPDRTCPEC 70 Query: 80 REIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + G D++ R KV+ R L G KV++I+ L+ + N+ Sbjct: 71 QRVLSGNHPDVVVARPEGRQIKVDQVRYLKAEFSKTGVEGEKKVFIIEGAETLTGSAANS 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP V L T + + T+ SRC L+ L E ++ QL+ Sbjct: 131 LLKFIEEPGPGVYIFLLTPNKNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGV------ 184 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 P L LA S + SL + + + Sbjct: 185 -PEYLGPLAAGLGLSAKQGASLMEDDWL----------------PTSVKLVFDWFKEVAS 227 Query: 259 ANGERVMALINEAAARGIE---WEALLVEMLGLLHR-IAMVQLSPAALGNDMAAIELRMR 314 + + + +G + LL + + + + + + Sbjct: 228 GDPLSFVDVQTGFLKQGSDRAKQLVLLDLVTMVWRDALLLKNRVTEPERLHFRQWQAEVA 287 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 +L + + + L GR L + VE LR L E Sbjct: 288 QLIMPSSAQQVLVASELTLEGRHLLDQNISFQNVVEQLTLRLLLVMKGDFSEE 340 >UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukaryota RepID=A2QER5_ASPNC Length = 388 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 138/377 (36%), Gaps = 67/377 (17%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Q RP+T DV Q+H L L + H LF G G GKTS LAK L Sbjct: 34 QQPWPHS-RPKTLDDVAAQDHTTKVLQRTLQASNLPH-MLFYGPPGTGKTSTILALAKSL 91 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---- 118 + + ++E++A+ + R+ + N A Sbjct: 92 FGPSLYRSR------------------ILELNASDERGIGIVREKIKNFARAQLTHSTGL 133 Query: 119 -----------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 FK+ ++DE +++ + +AL +T+E+ +F L ++ + Sbjct: 134 GEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 193 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC +F KALD +LEHI E++ E + L +EG +R A++ A Sbjct: 194 SRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKL 253 Query: 228 --------------------GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN----GER 263 ++ + + + G + + +LV+AM E Sbjct: 254 VGAGRAGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEA 313 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA----ALGNDMAAIELRMRELA-R 318 V ++ + A G L +L L R+ P + + ++ R+ + A Sbjct: 314 VAKVVTDIIADGWSATQL---LLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADE 370 Query: 319 TIPPTDIQLYYQTLLIG 335 + D+ L +L G Sbjct: 371 HLSILDVALKISGILGG 387 >UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Tax=Prevotella RepID=C9MR40_9BACT Length = 421 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 132/395 (33%), Gaps = 69/395 (17%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q K R F+DV+GQE L + R+ HA LF G GVGK ++A A L Sbjct: 34 HQATKDKER-MNFSDVIGQEATKQRLLQMIKEDRVPHAMLFCGPEGVGKMALAMAFANYL 92 Query: 63 NCETGITATPCGVCDNCREIEQG-RFVDLIE-------------IDAASRTKVEDTRDLL 108 + T + N + + DL S ++ +L+ Sbjct: 93 LAGDEVDNTESPLISNAIAMLRKWEHPDLHFSFPTIKLPSMSGDHQPVSSDFAKEWHELI 152 Query: 109 ---------------------------------DNVQYAPARGRFKVYLIDEVHMLSRHS 135 + ++G +KV +I ++ S Sbjct: 153 MCGAYFTMNQWMKQMGATTQQAIITGAESDELSRVLSLKSSQGGYKVSIIWRPERMNLTS 212 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N LLK LEEPP+ FL+ +P+KL TI+SR + +K +D I L H Sbjct: 213 ANKLLKLLEEPPQGTIFLMVCEEPEKLLETIISRTQRIDVKRIDDNAIEQALIH-----Q 267 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 EP A + +A A GS AL D ++ L + L+ Sbjct: 268 RGIEPDAAKRIAHIAHGSWLKALETLD----------TSNENREFL-----NMFQMLMRL 312 Query: 256 MVEANGERVMALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 N + + A G E +LV + + A L E + Sbjct: 313 CYLRNVKDLKRWSEVVAGYGREKERRMLVYFQQQVRENFIFNFRNAELNYMTLEEENFAK 372 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 AR I ++ + +++ + ++ Sbjct: 373 NFARFINEANVIEINELFERANRDIGQNANAKVVF 407 >UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bacteroidales RepID=C7X8N1_9PORP Length = 374 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 128/381 (33%), Gaps = 64/381 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQE V L G + HA LF+ G G +A A+ LNC Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCTNRTDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--------------------------------------- 93 CG C +C + ++ DL + Sbjct: 61 CGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEWLDY 120 Query: 94 ----DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 ++ + +++ +++ + +++ ++ L N LLK +EEPP Sbjct: 121 IEAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKIIEEPPMR 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 L+ + P + TI SR + H++ ++ + I + + P + +A Sbjct: 181 TVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNAMVS-----RFGLSPDDAKHVAHL 235 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 + GS A+ +AI+ G+ +Q +++ N + + A+ + Sbjct: 236 SSGSFIKAM----EAISLGEENKFF-----------LEQFKAMMRNSWARNVKGMKAMAD 280 Query: 270 EAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 A G E + L L+ M + L + + + ++ Sbjct: 281 VMAGIGRERQKNFLSYCQHLIRENFMYRFQSPELNYMNLDEASFSVKFSPFVNERNVIDL 340 Query: 329 YQTLLIGRKELPYAPDRRMGV 349 + L + + + +M Sbjct: 341 MEELAKAERHITQNVNAKMVF 361 >UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=Methylococcus capsulatus RepID=Q606M1_METCA Length = 335 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 138/337 (40%), Gaps = 31/337 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 L L GR+ L SG GVGK +A A+ L C + CG C CR + Sbjct: 14 ARRRLRAYLEAGRLPQGLLISGAAGVGKGVLADDFARRLLCASPPAEGACGTCHACRLVV 73 Query: 84 QGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D + I+ R VE R L+D + P G +V +I H ++ + N+LL Sbjct: 74 AGNHPDYLHIEPEEAGKRITVELVRRLIDRLSLKPQYGASRVVVIRPAHAMNMAAANSLL 133 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP H FLL + P +LP T+LSRC + ++ + E+ L + + E Sbjct: 134 KTLEEPDPHTLFLLISERPAQLPATVLSRCQRLDVRLPEREEALRWLRG----QGVGEEA 189 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 AL A G+ A+ L + ++ A+L D+ L++ E Sbjct: 190 EAL---LAMAGGAPVRAVELHGGGDLAQRRRMLFDDWVAVL--RDESDPLAVAE------ 238 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA--LGNDMAAIELRMRELAR 318 + E +L+ + G + + + + A+ L A +E +R+ A Sbjct: 239 -----------RWAKEDGETVLIWLRGWIADLIRISSTEASVPLRLANADLEPGLRKAAA 287 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + + R+ L +R++ +E L+ Sbjct: 288 GLDLRALFACLDGVDAARRNLEGQANRQLVMEEILIN 324 >UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTP5_9GAMM Length = 311 Score = 159 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 118/338 (34%), Gaps = 47/338 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 E +L + + GR+ HA L SG +G+GK +A LA+ L C + CG C C Sbjct: 9 HEDAWASLNSSIDSGRLPHAVLISGDQGIGKLRLATALAQRLICSAEMVKYACGTCKTCN 68 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D+ ++ K++ R L +++ +G +KV +I ++ ++ N Sbjct: 69 LFSAGSHPDITYLEPEEKGKAIKIDPVRKLCESLSKTAQQGGWKVAIIAPAEAMNINAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK LEEP +L + P +L TI SRC + + + + L + Sbjct: 129 ALLKNLEEPQSKTLLILVSHRPSRLSATIRSRCQKLSMPTPEADIALQWLTD------VT 182 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ A + + A G AL Q ++ + D LV A Sbjct: 183 NDRIAAEQVLPLAGGRPLLALDYLQSDNLEQRRQ-----FETLVAEVADGSLSPLVAA-- 235 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + ++ E + +HR+A +L+ Sbjct: 236 -------------QQCQKLDGEQSIDWFSRYIHRLATTELADKPNTALFG---------- 272 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + L P+ +M E + Sbjct: 273 --FSDKLLLARNWILSG------NNPNPQMLWEELFMD 302 >UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micrococcaceae RepID=C5C8W4_MICLC Length = 396 Score = 159 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 128/373 (34%), Gaps = 47/373 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA 70 P FAD+ GQE + L + R HA++F+G G G+++ AR A L CE A Sbjct: 6 PAVFADLAGQEAAVAQLRRAAAADRPTHAWMFTGPPGSGRSTAARAFAAALQCEVADPAA 65 Query: 71 TPCGVCDNCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C CR + G D+ A ++ED R L++ Q PA GR++++L+++ Sbjct: 66 RGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRIFLMEDAD 125 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLK +EEPP ++L T P + T+ SRC L VEQ+ L Sbjct: 126 RMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVEQVAELLHR 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + AR ++ + A L A + D Sbjct: 186 -----RDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAMAL 240 Query: 250 LSLVEAMVEAN----------------------------GERVMALINEAAAR------- 274 + + + +A ++ + Sbjct: 241 AATLAEVSKAEAESAAEARDAEELEALRRSLGLEPVEPVPPKLRHHVKRLEEDQTRRRRR 300 Query: 275 --GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA--IELRMRELARTIPPTDIQLYYQ 330 + +++++GL + VQL + A + Sbjct: 301 AVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRGEIEAYARGAAGDSAEVLAR-ID 359 Query: 331 TLLIGRKELPYAP 343 + R + Sbjct: 360 AVATARGRIAANV 372 >UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CUE4_CRYPV Length = 383 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 133/383 (34%), Gaps = 55/383 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP D++ + ++ + +S G++ H LF G G GKTS ++K Sbjct: 10 AQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPH-LLFHGPPGTGKTSTIHAISKC 68 Query: 62 LNCETGITATPCGVCDNCREIE----------------------QGRFVDLIEIDAASRT 99 + + + R I ++ IE+ S Sbjct: 69 IYKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTR 128 Query: 100 KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 ++ + L +N+ K+ ++DE M++ + AL + +E EHV+F + Sbjct: 129 NLDCNKSLCENI---------KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYV 179 Query: 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 K+ + SRC +F L +E IR+++ I E I + L +++ G +R L+ Sbjct: 180 NKITPALQSRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLN 239 Query: 220 LTDQAIASGDGQVS---------------------TQAVSAMLGTLDDDQALSLVEAMVE 258 + S G + + + +LG + + + Sbjct: 240 VLQSCSMSNYGNIEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSR 299 Query: 259 ANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + + G + + + L +A IE R+ A Sbjct: 300 ESFSSGFSALQNSQNENGYSTQDFVNGLYSKSMEANWPDEVVPLLMRRLADIEYRLSRGA 359 Query: 318 -RTIPPTDIQLYYQTLLIGRKEL 339 +I I + + + ++L Sbjct: 360 SESIQLAAIVSCFHEVRMEMEKL 382 >UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YGD5_EXIS2 Length = 330 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 124/347 (35%), Gaps = 22/347 (6%) Query: 13 QTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 QTF ++ Q + T L N L RI+HAY+F+G A+L AK L CE Sbjct: 2 QTFHELEQTQSVIATILRNSLQTNRINHAYIFTGDYEPLLLEAAQLFAKSLFCERRDQIE 61 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC C +CR ++ G VD +I+ K E ++L+ ++ G ++Y++ + H Sbjct: 62 PCQTCRSCRRMDSGNLVDYYQIEPDGATIKKEQIQELMHDLSLRGLEGDRQIYVVTQSHK 121 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLK EEP +L T PQ L TI SR + D I L Sbjct: 122 MTPQAANSLLKFFEEPGAGKVAILITNQPQLLLPTIRSRGQLLSFRPADRLLIGQVLSEK 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 L LA + DA + Q + + D Sbjct: 182 TGR------DNELTQLAARVYPKIEDAEQALVEDWFVNARVSVLQLMEELANRPADLPLF 235 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 V + L + + ++L+P+ A Sbjct: 236 -------------VQEKWMSQFKNRQDARIGLELVTCFFEDVLHLKLNPSWETITYANSR 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + ++ T I + Q +L K + + ++ VE + Sbjct: 283 PLLEQMGGK-SQTTITRWLQAVLAAVKRIEANVNPQLTVERLMFDLQ 328 >UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseudomonadaceae RepID=HOLB_PSEAE Length = 328 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 125/340 (36%), Gaps = 32/340 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q+ + + L HAYL G G+GK ++A A L C+ A CG C C+ Sbjct: 8 QQALWSQLGGRAQH---AHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGACGECKACQ 64 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G D ++ +V+ RDL+ V G KV L++ ++ ++ N Sbjct: 65 LLAAGTHPDYFVLEPEEAEKPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAAN 124 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK+LEEP LL + P +L TI SRC+Q L L +E Sbjct: 125 ALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCVQQACPLPGAAASLEWLARALPDE--- 181 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 AL+ L + GS A L Q + QV + V +L + + Sbjct: 182 -PAEALEELLALSGGSPLTAQRLHGQGVREQRAQV-VEGVKKLLK-----------QQIA 228 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + L I QL+ G +A + ++ L Sbjct: 229 ASPLAESWNSVP--------LPLLFDWFCDWTLGILRYQLTHDEEGLGLADMRKVIQYLG 280 Query: 318 RTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLLR 355 + LL R+++ +R + +E L++ Sbjct: 281 DKSGQAKVLAMQDWLLQQRQKVLNKANLNRVLLLEALLVQ 320 >UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 Tax=Eutheria RepID=Q29RS9_BOVIN Length = 337 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 120/315 (38%), Gaps = 45/315 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 121 ------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I ++EH+ + L + +EG LR A++ A +G +V+ Sbjct: 199 FKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVT 258 Query: 234 TQAVSAMLGT------LDDDQALSLVEAMVEAN----------GERVMALINEAAARGIE 277 + ++ + G L + +VE + E++ + A E Sbjct: 259 EKVITDIAGDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADE 318 Query: 278 WEALLVEMLGLLHRI 292 L+ ++ ++ Sbjct: 319 HLQLISLCATVMQQL 333 >UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2Y1_9PROT Length = 331 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 126/356 (35%), Gaps = 48/356 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNC 79 Q+ T L R LF G +G+GK +A A+ L C+ CGVC +C Sbjct: 8 QKDDWTRLQAL--RERASQGLLFQGMKGIGKLDLAISYARALLCQHPSGNGFSCGVCPSC 65 Query: 80 REIEQGRFVDLIEIDAAS-------------RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 QG D + S + V+ R L D + +G +V +I Sbjct: 66 HWFIQGSHPDFRMVQPESETEEVEAGKKPSRQISVDQIRALSDFMGMTAHQGGRRVVIIH 125 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 ++ ++ NALLK LEEPP + F+L T P+ L T+LSRCL F + A D Sbjct: 126 PAEAMNTNAANALLKNLEEPPPGLLFILVTHKPEVLLPTLLSRCLSFSVAAPDAATATAW 185 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L + + + L A S A + A+ G + + L Sbjct: 186 ----LAAQRVKNPAEVLAY----AGFSPLQA-----KLAANEGGMDVREKLLRALRQPGA 232 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ +A+ + E ++ + + + +++ + Sbjct: 233 MDVFAMADAL-----------------QKTEQVLVVQWLQQWCYDLIAQKMAGS--LRYH 273 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + + L + ++ L ++E + + ++ E L + Sbjct: 274 PSEQAAISALVSNLDAINLARLQSYLQTAKRESQHTLNPKLFFESLLFTYCQLTRQ 329 >UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonproteobacteria RepID=A7ZAZ1_CAMC1 Length = 394 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 112/298 (37%), Gaps = 42/298 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LA +RP+ ++ GQ+ V TA ++ +I H+ +F G G GKTS A Sbjct: 1 MS--SLALMFRPKNLDEICGQKAVKTAFLKFIATSKIPHS-IFYGPAGCGKTSFA----- 52 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 R + G D E D K++D R +L N + A Sbjct: 53 -------------------RAVASGANYDFYEFD-GGNLKIDDFRKILKNYENA---LNK 89 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ IDE+H LS+ ALL +E V L I SR + F + L Sbjct: 90 PLFFIDEIHRLSKTQQEALLIPMENYKALVIGASTENPFFTLSSGIRSRSMLFEFRPLSS 149 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 L I + + + A + L +++ G R L+L + A+ D VS + + + Sbjct: 150 SDFEELLAKIKEQISFSIDEDAKEYLFKSSGGDARAMLNLLEFAVTL-DENVSIENLKTL 208 Query: 241 L----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + A + ++++ ++ V+ + G + + M Sbjct: 209 RQNALKEGAKEDDTHYELASAFIKSLRGSDENAVIYYLARLIDSGESADFIARRMAIF 266 >UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=Granulicatella RepID=C8NGL8_9LACT Length = 319 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 114/333 (34%), Gaps = 23/333 (6%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNCREIEQ 84 A + + HAYLF G +G+GK +A+ +AK LNC C VC++C IE Sbjct: 6 EAFIRTIDNLQFSHAYLFEGAKGIGKAEMAKEIAKILNCTNRSVGEGACQVCEHCLRIEH 65 Query: 85 GRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 G F D I ++ KV R L + + +I V L+ + N+LLK L Sbjct: 66 GNFPDYIVVEPEGTTIKVNQIRALKSQLTKTAMESSAIICVIHAVDTLTPGAANSLLKFL 125 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEP ++ F+L T K+ +TI SRC ++ + + L+ Sbjct: 126 EEPTGNIHFILLTEQLSKVLITIQSRCQIIRFQSNQEDTVNGLLKEKGAS-------NVT 178 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 L S AL L + Q S + Sbjct: 179 AQLVSQLTNSADQALLLLESESFGQIRQESWNWFVRIFTNRAMAFI-------------T 225 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 + + + +E E L + + + + ++ +A + Sbjct: 226 IQSQVLPLLVSKVESEQFLTLLQLYIRDALL-CAQGLEGQLIQSDKIATVKTIAGKLSVK 284 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ + ++ + +E +L+ Sbjct: 285 QWIQEHEKMTKALSKIQSNVGVQAVLEQWVLQI 317 >UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHK9_ENTBH Length = 303 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 117/286 (40%), Gaps = 30/286 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y L K+RP ++ G +++ L + L + LF G G GKT+ + L Sbjct: 1 MEYTKLTEKYRPTDLNNICGNTNIIQCLKSFSLLD-FPN-MLFYGPPGTGKTTTIKALIH 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + ++++E++A+ + R+ + + Sbjct: 59 ----------------------NKINPINILELNASDDRGINIVRNQIKQFAETSTQ--L 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ ++DE +SR + NAL + +E+ E+ +F L + + I SRC +F + Sbjct: 95 RLVILDEADSMSRDAQNALRRIMEDY-ENCRFCLICNYVKNIIDPIQSRCAKFKFSNMTD 153 Query: 181 EQIRHQLEHILNEEHIAHEP-RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+++ I+N+E+I E + +L AA G +R ++ Q I ++ + V Sbjct: 154 EEVKCHALEIINKENIVIEDIEGISMLVSAANGDMRKLINDI-QGIKKTYNKIDKKHVQE 212 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 LG +D DQ + ++ IE E +L E+ Sbjct: 213 FLGIVDQDQINKICGWLLNPEI-SFKNAYMAILNEDIECETILQEI 257 >UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Methanosarcinaceae RepID=Q12UK9_METBU Length = 341 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 130/365 (35%), Gaps = 41/365 (11%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RPQ D+VG + +L + + G + H +F G GK+S A LA L E Sbjct: 5 WTVKYRPQKLEDIVGNGESVNSLVHLVGSGNLPH-LVFHGPVNSGKSSTAFALAYELYGE 63 Query: 66 TGITA----TPCGVCDNCRE--IEQGRFVDLIEIDAASRTKVEDT----RDLLDNVQYAP 115 D + + RFV +I D + + + Sbjct: 64 YYENNFTYFNASDFFDQGKRYLVRDKRFVHIIGTDDPKKIYSSVISIFKEVINEFAGMGS 123 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 +K+ ID V L + +AL + +E+ +F+L+TT P KL + SR L+ Sbjct: 124 LDADYKIIFIDNVESLETGAQHALRRIMEKYTRTCRFILSTTQPSKLIAPLRSRGLELFF 183 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VST 234 + + +R + + +E I+ L A G++ AL A+ + G+ ++ Sbjct: 184 TYVPDDALRSFVISVAEKEAISISDDGYDALLYYAGGNVSKALLTLQFAVMNHPGKTITG 243 Query: 235 QAV-SAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRI 292 + + LG + + L A +E + + LI+ G + +L ++ ++ Sbjct: 244 EILYEEALGDVSKN-VTELHNAAIEHDVLKARKLIDTLLIEEGFTGDEVLQQLHSVV--- 299 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + + + + + R+ +E Sbjct: 300 ----------------------VESGRVEGE-VAKAICRIADTDAMVIDSANPRIHLEKL 336 Query: 353 LLRAL 357 + Sbjct: 337 VTELY 341 >UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KYK3_9ALVE Length = 277 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 31/257 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP ++ Q V+ AL + G + H LF G G GKTS LA+ L Sbjct: 23 VPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPH-LLFYGPPGNGKTSAILALARELF 81 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY------APAR 117 ++E++A+ ++ RD + AP Sbjct: 82 GPELWRDR------------------VLELNASDERGIDVIRDKVKKFAQISVRAVAPGS 123 Query: 118 GR----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 G+ FK+ ++DE +++ + AL + +E + +F + ++ + SRC +F Sbjct: 124 GKSAPPFKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKF 183 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA--SGDGQ 231 + L E R +LE+I N E + A++ L + G LR A++ + S D Sbjct: 184 RFEPLSDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSCLSDDEA 243 Query: 232 VSTQAVSAMLGTLDDDQ 248 ++ + + G D Sbjct: 244 ITVEEILEASGFADSSY 260 >UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actinomycetales RepID=B1VI07_CORU7 Length = 448 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 76/412 (18%), Positives = 137/412 (33%), Gaps = 82/412 (19%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + + Q V LA ++ + H++LF+G G G++ A+ A GL C G C Sbjct: 34 WRKITAQP-VRELLAGAVANPQAMTHSWLFTGPPGSGRSIAAKAFATGLVCPNGG----C 88 Query: 74 GVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C+ C+ G D + S VED R+++ + P R++V ++++ L+ Sbjct: 89 GECEQCQSAATGTHPDIVWIATTGSVIPVEDVREVISSAASMPTVSRWRVVVVEDADRLN 148 Query: 133 RHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 NALLK++EEPP H F+L +TDP + +T+ SRC ++ +Q+ L Sbjct: 149 EAGSNALLKSVEEPPAHTVFVLCAPSTDPLDISITLRSRCRHVYIPTPSPQQVEDVL--- 205 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ---VSTQAVSA-------- 239 L + + + A + G + A L A Q V Sbjct: 206 LQDASLGITQEQARWAAGVSGGHIGRARHLARDEAARTKRATALKLPQMVYEGARLFSFT 265 Query: 240 -MLGTLDDDQALSLVEAMVEANGERVMALI-----------------NEAAARGIEWEA- 280 L ++ + VEA+ E + + + E + Sbjct: 266 SQLVAKATEEVAAQVEAVEAKEREALEESLGVGAKGRGAAKAQRGSAGQMKELEREQKNR 325 Query: 281 -----------LLVEMLGLLHRIAMVQLSPAALG-------------------------- 303 L++++GL + Sbjct: 326 RTRMVRDALDLALIDVVGLYRDAMLQAAGAVEPVGGSADAAEVATGDTDGTAAAAHGLQP 385 Query: 304 ---NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + ELAR P + + R+ L + ++ Sbjct: 386 VGGFQHPDMRATSGELARRNSPEALVRCIDAVSACRETLGMNVKPEVALDAL 437 >UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Bartonella RepID=A1UT07_BARBK Length = 347 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 150/343 (43%), Gaps = 38/343 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG-LNCETGITATPCGVC 76 ++G E V LA R+HHA LF G RG+GK ++A A L+ + P Sbjct: 25 IIGHEEVRHFLAQLRKEKRLHHALLFEGERGIGKATLAFHFAWNILSNQENGFLQPEYDS 84 Query: 77 DNCREIEQGRFVDLIE---------IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 R+I QG +L+ + ++D R+++ ++ G ++V +ID Sbjct: 85 VIWRQIAQGSHPNLVYVARRFDSKTKKFKTGISIDDIRNMMYFLKQTSRNGEWRVVIIDP 144 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++R++ NA+LKTLEEPPE F++ T +KL TI SRC Q L++L ++++ + Sbjct: 145 ADDMNRNAANAILKTLEEPPEKTLFIIITHSSRKLLSTIRSRCQQVLLRSLHDDEMKQVI 204 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV--STQAVSAMLGTLD 245 HI+ ++ ++ + ++++ + +EG R A L I+ G ++ + + T + Sbjct: 205 SHIIPKQALS-DEETVKMIIQKSEGRPRKAALL----ISYGGFEIAKTLDNLFKQ-STCN 258 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN- 304 +L +A+ + + I+++ E+L + + A++ AL Sbjct: 259 LAIVHNLAQALSSFDLD-------------IQFQQFCDEILDRIQKKAILFAEQGALALS 305 Query: 305 -----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 I + E+ + Q L K + Sbjct: 306 KKYAQIWQNIHQEILEM-QLFNLDKKQFIINLLFKIHKIIQQT 347 >UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1Q1_9PLAN Length = 369 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 129/361 (35%), Gaps = 39/361 (10%) Query: 12 PQ-TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 PQ ++ VVG V++ L+ GR+ +L G G+GK + A LAK L C+ Sbjct: 5 PQGSWHGVVGHLDVVSRFEAMLAGGRMASTFLLVGPSGIGKRTFAIQLAKALLCKHSPDG 64 Query: 71 --TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN------------VQYAPA 116 CG C +C +++ DL I + L+ + + P Sbjct: 65 RLKACGRCPDCLQVDSLSHTDLQVISKPADKAFIPLELLIGDKEHRMRAGLCYDLSLRPR 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G K+ +ID+ L++ NALLKTLEEPP +L T Q+ TI SRC + Sbjct: 125 DGGRKIAIIDDADYLNKEGANALLKTLEEPPPRSVLMLLGTSEQRQLPTIRSRCQIIRMS 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L I L + P +A + GS++ A+ L + + + + Sbjct: 185 RLHETSIADLLVR----HQLCDSPELAAKIAGLSAGSMQQAILLLGEGVLEFRRDLLAKL 240 Query: 237 V---SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 LG VEA + + + + +L L Sbjct: 241 STLPLETLGVA--KMVSQFVEAAGKESPAK-----------RARMKQVLEMAQQLYRGFL 287 Query: 294 MVQLSPA--ALGNDMAAIELRMRELARTIPPT-DIQLYYQTL-LIGRKELPYAPDRRMGV 349 + A+ + +++L RT+ P ++ L + + + Sbjct: 288 YAATTGTEPAIEERDHELTSAVQKLYRTLGPQPELAADLVDLAIDAETHIDGNVNLTGLA 347 Query: 350 E 350 E Sbjct: 348 E 348 >UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta RepID=B2W7D9_PYRTR Length = 534 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 105/298 (35%), Gaps = 42/298 (14%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP + V GQE V L + GR+ + + G G GKT+IARL+A Sbjct: 118 PLAERMRPMSLEHVYGQELVGPKGILRAMVDEGRLP-SMVLWGRPGTGKTTIARLIA--- 173 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRFK 121 ++ T++E R + GR Sbjct: 174 ----------------------NTSGSRFVEINSTSTRLEQVRAIFTEASQDLRLTGRKT 211 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + DE+H S+ +A L +E + K+ +LSRC F L L + Sbjct: 212 IVFCDELHRFSKTQQDAFLGPVESGTITLIAATTENPSFKIISALLSRCRTFTLDDLKED 271 Query: 182 QIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ------- 231 + LE + E + L AR ++G R AL+L + A++ + Sbjct: 272 DLVKILERAMTAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLANQPDMTKEKI 331 Query: 232 ---VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 ++ V G D +L +++ ++ + + G + + ++ Sbjct: 332 QQSLTKTLVYDRAGDQHYDSISALHKSIRGSDPHASLYYLARMLESGEDPRYIARRLI 389 >UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria RepID=B5Y9V9_COPPD Length = 459 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 116/311 (37%), Gaps = 52/311 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA + RP+T ++VGQ+ T L + ++ + + G GVGKTSIA ++A Sbjct: 18 IPLAERMRPRTLDEIVGQDKAFGKGTLLRKLIEEDKLT-SLVLWGPPGVGKTSIAMVIA- 75 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +A + +++ +++L++ + GR Sbjct: 76 ------------------------NTTKARFLRFSAVTSGIKEIKEVLEDAEVQFNMGRR 111 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ +A L +E+ + ++ +LSR L+ L+ Sbjct: 112 TVIFVDEIHHFNKTQQDAFLPYVEKGAVVLICATTENPSFEIISPLLSRSKVVVLEPLEA 171 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 E I+ L L E + L +A ++G R AL+ + A+ D Sbjct: 172 EDIKTILYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIALNTLEMAVFGTDPNSE 231 Query: 230 --GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 +S + +S L G + +L ++M ++ + + + G + Sbjct: 232 GIRVISDEVISEALQKKTLLYDKAGEEHYNLISALHKSMRNSDPDAALYWLARMLEAGED 291 Query: 278 WEALLVEMLGL 288 + ++ Sbjct: 292 PLYVARRIVRF 302 >UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organisms RepID=Y508_THEMA Length = 599 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 115/298 (38%), Gaps = 37/298 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + L+ RP+ F D VGQ+H+ L L G + + L G G GKTS+ LL Sbjct: 4 SEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSIL-YGPPGSGKTSVFSLL 62 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 + N E + +++ V + +++L + G Sbjct: 63 KRYFNGE-------------------------VVYLSSTVHGVSEIKNVLKRGEQLRKYG 97 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DE+H L+++ L+ +E + + +LSRC + K L Sbjct: 98 KKLLLFLDEIHRLNKNQQMVLVSHVERGDIVLVATTTENPSFVIVPALLSRCRILYFKKL 157 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAV 237 E + L+ +I E + + R +EG R L+ + A + +V+ + + Sbjct: 158 SDEDLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTLEIVHQAFKNKRVTLEDL 217 Query: 238 SAMLGTL-------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +LG + D A + +++M ++ + + + G + + M+ Sbjct: 218 ETLLGNVSGYTKESHYDFASAFIKSMRGSDPNAAVYYLVKMIEMGEDPRFIARRMIIF 275 >UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZYH4_9PLAN Length = 357 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 123/371 (33%), Gaps = 34/371 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TA 70 ++ ++ G + V ++ GR+ +LF G VGK A LA+ L CE Sbjct: 1 MSWDEIQGHDAVQAKFRTAVARGRLASTFLFVGPPAVGKRKFALKLAEALLCEVNPPADL 60 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL------------DNVQYAPARG 118 PCG C++C ++ DLI + + L+ ++ P RG Sbjct: 61 NPCGKCESCVQVRAHSHPDLILVSRPANRTRIPVDLLIGDGQNRMRAGLCHDITLRPYRG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 KV +ID+ L+ N LLKTLEEPP +L +T Q+ TI SR L Sbjct: 121 GRKVAIIDDADYLNVEGANCLLKTLEEPPPKSVMILLSTSLQRQLPTIRSRSQIIRFDPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L E+ + E ++LA GSL A+ + D + + + Sbjct: 181 SNEVIAALL----VEQGVVAELEEARVLAELGHGSLERAMQVADPELREFRAVLLPR--- 233 Query: 239 AMLGTLDDDQA---LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 LGT D E + A E E L R Sbjct: 234 --LGTPDFPSVPLAKETAEFVDRAGKEAPPRRARLIL-----VMQFAAEFYEQLMRALCG 286 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R A P + +E+ + V+ + Sbjct: 287 RAVAGDDLLRKQVERAVPRFTA---GPDAAAACLARCIEAEQEVEANANLATLVDAWMDD 343 Query: 356 ALAFHPRMPLP 366 + +P Sbjct: 344 LSSAGRLGYVP 354 >UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM Length = 323 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 113/330 (34%), Gaps = 31/330 (9%) Query: 29 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 ++ GR+HHA + G+GK S A+ LA+ L C+ I PC C C+ E Sbjct: 14 QTQMTAGRLHHALFITSASGMGKLSYAQTLAQTLLCKEPIGWEPCHRCHPCQLFETSVHP 73 Query: 89 DLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 D + V+ R + + G KV +I+ + S NALLKTLEEP Sbjct: 74 DYYLVSTEPGKVIGVDRIRHISQKLNEHSQLGGNKVVIIEHAESFNLASANALLKTLEEP 133 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 +L + ++ TI SRC + HL A ++ L+ E L + Sbjct: 134 SNGSYLILLAENKSQVLPTIYSRCQKLHLPAPAEQESMAWLQQ-----QFPIESPTLTAI 188 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 R G+ LS + ++ + L T L E + + E+ Sbjct: 189 -RINHGAPLHTLSYLNNGDDDLRKEIFSNIT---LLTTQPAAITRLCEIISDRTLEK--- 241 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 L + +L + V+ + + + + I Sbjct: 242 ---------------LSWLQFILLDLQKVKRGVSIDYIVNTDQLEWLTHFSTQLSQDKIT 286 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L R+ L + + E +L Sbjct: 287 QLQSELTALRQLLMQNNN--LTAETLVLSF 314 >UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRY4_METLZ Length = 332 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 23/340 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP +F +V+GQ + L+ +LG + H L G G GK+S + ++ E Sbjct: 3 WIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPH-LLVIGRSGCGKSSALEVFSRRFYTE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-------VQYAPARG 118 + T V QG E D + ++ L + P Sbjct: 62 SAAENT--TVLPVSVMFSQG-HTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSA 118 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 F++ + D L++ + AL + +E+ + +F+ T+ + I SRC+ + + Sbjct: 119 PFRLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPI 178 Query: 179 DVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 D +R L+H+L +E + L +L + G LR AL + +S + Sbjct: 179 DEATMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKALVWLELMALHDVSDLS-EL 237 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMV 295 ++ G L L A + ++ G+ +L + R + Sbjct: 238 MTTETGELSAAAVL----AAGRGDSAAAQQIVENLQIEYGMNAGDVLRSL----RRCLIG 289 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 ++P A + + LL G Sbjct: 290 NITPDLALLFSKAEITLVEGQNEYLQMNAFTAELTELLSG 329 >UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Tax=Clostridium RepID=B2UY72_CLOBA Length = 310 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 120/341 (35%), Gaps = 37/341 (10%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 +++G E ++ HA L G G+GK+ +A LA + G Sbjct: 3 EIIGHERIINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSILGLKGD-------- 54 Query: 77 DNCREIEQGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 FVD+ +S V+D R+++ V P KV ++ + ++ + Sbjct: 55 --------KEFVDIINYYPLSSSFGVDDIRNIIAEVSKKPFESDKKVLILHKCEKMTIQA 106 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKT+EEPP V +L + + + TI SRC + L L I +E + Sbjct: 107 QNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSKGDITKYIESKYFDIS 166 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 I ++ AL ++G + + + L L+ Sbjct: 167 IENKKAALAY----SQGIPGKVEKFIEDGKLNDLRNI----------------LLDLLCD 206 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + N V+ + + +L ++ + I ++ + +R+ Sbjct: 207 LENNNDNFVLKYKEILPSYKDKQSEVLNILISYIRDIMFLKELDSNDLVVNFDKLKEIRD 266 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 ++ + + + + R L + M + + L+ Sbjct: 267 ISMRMSYKKLNSMLEYIKEARLSLNNNTNYSMTITVLLMGF 307 >UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillonellaceae RepID=D1BNC9_VEIPT Length = 433 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 119/310 (38%), Gaps = 53/310 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +Y+ L + RP + GQE + T L + I + LF G G GKT++A ++ Sbjct: 12 TYEPLPVRMRPTKLDHLYGQEKAIGKGTFLRAMVEKDTIP-SMLFYGPCGTGKTTLAGII 70 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PAR 117 AK A+ + + R ++++ + + Sbjct: 71 AKV----------------------SNSH---FVNLNATNAGIGELRTIIEDARKRVRSL 105 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 + + +DE+H ++ + LL +E+ + + ATT+ ++ +LSR L Sbjct: 106 QQRTILFLDEIHRFNKSQQDVLLPCVED--GTIILIGATTENPFFEVNRPLLSRLRLITL 163 Query: 176 KALDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS- 227 +AL + I L + +E H+ L+ + G R AL++ +QA A Sbjct: 164 EALTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAAAMV 223 Query: 228 -GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 +G ++ + + ++ G D + +++M ++ + + + G Sbjct: 224 PDEGTITIEVLEKVVGRRIYTYDKKGDSHYDTISAFIKSMRGSDVQATVHYLARMIEAGE 283 Query: 277 EWEALLVEML 286 + + ++ Sbjct: 284 DPNFIARRIV 293 >UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacteroidetes RepID=C0BGA7_9BACT Length = 425 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 120/310 (38%), Gaps = 49/310 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ LA + RP++ + GQ+H++ L +S G + +F G G GKT++A+L Sbjct: 1 MN-TPLAERMRPKSLGEYFGQDHLVGPKGSLTQMISNGVFP-SLIFWGPPGTGKTTLAQL 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-- 115 LA L E +A V++ R+++ +++ Sbjct: 59 LA--LEKERP-----------------------FYQLSAINAGVKEIREIISKAEHSGGL 93 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G+ + IDE+H S+ ++LL +E+ + ++ +LSRC + L Sbjct: 94 FSGKSPILFIDEIHRFSKSQQDSLLNAVEKGIITLIGATTENPSFEVINALLSRCQVYVL 153 Query: 176 KALDVEQIRHQLEHILNEEHIAHEP----RALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 L E + L H L ++ I E + + L A G R LSL + I + + Sbjct: 154 NTLKKEDLEKILNHALEKDSIIKEYKIQLKETEALIELAGGDARKLLSLLELVIQANSKE 213 Query: 232 ---VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ V + G D + ++++ ++ + + G + Sbjct: 214 KLILTNDLVFETVQTNSVLFDKNGDFHYDIVSAFIKSIRGSDPNGAIYWLARMIEGGEDI 273 Query: 279 EALLVEMLGL 288 + ML L Sbjct: 274 GFIARRMLIL 283 >UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU66_TERTT Length = 339 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 34/340 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q A ++ G + HA L G G+G S+AR +A+ L C + + CG C CR Sbjct: 11 QNTYWHQFAGQVTQGHLPHAILLQGVAGIGTESLARAMAEFLMCSSPVEQAACGQCKVCR 70 Query: 81 EIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 ++ DL + + KV+ R L + V +G K+ +I+ ++ + N Sbjct: 71 LLQSHNHPDLFLLSPEEKSVVIKVDQVRQLTEFVAKTSQQGGRKLVIIEPAEAMNIAAAN 130 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK EEP F+L +L TI SRC L + L E + Sbjct: 131 ALLKCFEEPSGDTVFILVCHHANRLLPTIRSRCACHTLPVPERALAVSWL------ETMG 184 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 E AL L G+ A + + + + + LV A+ Sbjct: 185 VESAAL--LLDETHGAPLTAHQWSRDDVIASQDK-----ACEL-----------LVAALQ 226 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 +A G+E L ++ L ++ + + A + +A Sbjct: 227 TQKPVTTVAGTLAGECSGLE---LAELLINWLEQLIRERTRGSRRSLL--AHWEPLVGVA 281 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAP--DRRMGVEMTLLR 355 + + ++ + + +L P + M +E LL Sbjct: 282 QALSTVELFKLREVYCQRKAQLLANPNLNANMVIEDLLLE 321 >UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BIX6_9BACT Length = 367 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 61/378 (16%), Positives = 124/378 (32%), Gaps = 58/378 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TA 70 + +++GQE + L + + ++ HA LF+G G G I+ + L + + Sbjct: 1 MIWKNIIGQEDIKKQLEHLIDSNQVPHAQLFTGLSGYGGLPISLAFSLALLGISSECSSG 60 Query: 71 TPCGVCDNCREIE-------------------------------QGRFVDLIEIDAASR- 98 P G + + G + D E Sbjct: 61 KPLGEKIHHPDFHFVYPVVKRGTEKVAYCSDYSSEWTAFLSESLYGNYNDWFEAIVEGNK 120 Query: 99 ---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 V++ L + G KV +I +++ + N LK LEEPP++ F+L Sbjct: 121 QGLIGVKEIEKLHQKMHLKSYSGGNKVCVIWGTERMNKVASNKFLKILEEPPQNTYFILI 180 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 D + L T++SRC ++ + + + L + ++ L AEG R Sbjct: 181 AEDIEMLLPTLVSRCQLVNIPPITNKVLEASLSSEIKDKK---------SLVTQAEGDYR 231 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 + + L A + + + ++M + + G Sbjct: 232 RLQRIVQN---------TNNKEFEALLIAGLRVAFKVKKDVNS--IVKLMEWTGKLSQIG 280 Query: 276 I-EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 E +A L + ++ S L + + + ++A I +IQ I Sbjct: 281 KEEQKAFLNYGVQFFRDAFLINYSLHKLVHYQTENDFDIEKIAPFITSNNIQDLISLFEI 340 Query: 335 GRKELPYAPDRRMGVEMT 352 ++ + +M + Sbjct: 341 SHYQILRNANAKMVFDNL 358 >UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevotella RepID=C5VJN5_9BACT Length = 379 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 68/385 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE V L + R+ HA LF G +G GK ++A A L Sbjct: 1 MNFSEVIGQEAVKERLIQMVKEDRLPHALLFCGPQGAGKMALAMAFASYLLAGDEAEEAT 60 Query: 73 CGVCDNCREIEQG-RFVDLI-------------EIDAASRTKVEDTRDLL---------- 108 N R + + DL E S ++ L+ Sbjct: 61 SSTVSNARAMLRNWEHPDLHFSYPTIKLPSMSGEHQPVSADFAKEWHGLIMQGTYFTMNQ 120 Query: 109 -----------------------DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + ++G +KV +I ++ S N LLK LEE Sbjct: 121 WMNQMGATTQQAIITGAESDELSRVLALKSSQGGYKVSIIWLPERMNLTSANKLLKLLEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP+ FL+ +P+KL TI+SR + +K ++ E I L + + A Sbjct: 181 PPQGTIFLMVCEEPEKLLETIISRTQRIDVKRINDEAIEQALIN-----KRGIDTDAAHR 235 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 +AR A GS AL +A+ +G+ + M L+ N + + Sbjct: 236 IARIANGSWLKAL----EAMDTGNENREFHNMFQM-----------LMRLCYLRNVKDLK 280 Query: 266 ALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 A G E +L + M L E + AR I + Sbjct: 281 RWSEVVAGYGREKERRMLTYFQQQVRENFMFNFQTPELNYMTLEEENFAKNFARFINEAN 340 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGV 349 + + +++ + ++ Sbjct: 341 VIEINELFQRANRDIGQNANAKIVF 365 >UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PK32_CHIPD Length = 379 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 118/401 (29%), Gaps = 69/401 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE + L R+ HA + G G + A+ L CE Sbjct: 1 MLFSNVIGQEDIQQQLIRSTENNRLGHANIILAPEGAGGLPLGLAFAQYLVCENKQPDGA 60 Query: 73 CGVCDNCREIEQGRFVDLIE---------------------------------------- 92 CG C C + + D+ Sbjct: 61 CGQCQACTKAGRYIHPDIHFSYPVIPRKPGDKPISSDYAAEWREFIDTHPYGNAYDWLQF 120 Query: 93 ---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + + +D++ + +K+ L+ L N LLK +EEPP++ Sbjct: 121 IGAENKQGNITAMECQDIIRKLSLKSFESTYKILLMWMPEYLGNEG-NRLLKLIEEPPDN 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + +++ TILSR + L E + L N + A Sbjct: 180 TIFLLVAENQEQILATILSRTHLIKVNPLPKEVVVDALIKRAN-----IPAAKARQAATI 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A G+ R+AL + + + + + + N + + Sbjct: 235 ASGNYREALYMLQHSDDDY-----------------HELLRNWLNYIFTGNRVALQGWVE 277 Query: 270 EAAARG---IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 A+ + L + LL ++ + +L + ++ Sbjct: 278 GIASAKMGRENQKQFLRYFINLLEHTLRLKYIDRSQLAFAEEETDFAFKLQKLADLHQME 337 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 Q L + + ++ ++ + P+P Sbjct: 338 QIMQELDNACYYIERNANAKLLFHALSIKLQYIFKKRPIPA 378 >UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms RepID=B6HVW8_PENCW Length = 539 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 63/364 (17%), Positives = 123/364 (33%), Gaps = 44/364 (12%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP+T +V GQE V L + R+ + + G+ G GKT+IAR++A + Sbjct: 123 PLAERMRPKTLEEVCGQELVGPNGILRGLIEQDRVP-SMILWGSAGTGKTTIARVIASLV 181 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 +EI++ S E + + GR + Sbjct: 182 GSR------------------------FVEINSTSSGVAECKKIFAEARSELGLTGRKTI 217 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 DE+H S+ + L +E + K+ +LSRC F L L E Sbjct: 218 IFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTDED 277 Query: 183 IRHQLEHILNEEHIAH------EPRALQLLARAAEGSLRDALSLTDQAIASGDGQ----- 231 I L L E ++ + +Q LAR A+G R +L+L + A+ Sbjct: 278 IISILHRALQVEGPSYSPSELVDEELIQYLARFADGDARTSLNLLELAMDLSKRAGMDKE 337 Query: 232 -----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 ++ V G D + +++ ++ + + + G + + ++ Sbjct: 338 DLKRSLTKTLVYDRAGDQHYDTISAFHKSIRGSDPDAALYYLARMIQSGEDPLYISRRLI 397 Query: 287 GLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + I + + +L + ++ I + + + Sbjct: 398 VVASEDIGLADNTMLSLAISTHSAVEKIGLPEARINLAHATVAMALSKKSTRAYRGLNNV 457 Query: 346 RMGV 349 + Sbjct: 458 FAAL 461 >UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax=candidate division TM7 RepID=UPI00016B2545 Length = 400 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 113/303 (37%), Gaps = 41/303 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ LA RPQ D++GQ H+L L + + + + G G GKT++AR+ Sbjct: 1 MNKTPLAELMRPQKIKDIIGQRHLLSEGKILYKIIKQ-KEPVSLILWGPPGSGKTTLARI 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 I + + +E+ A + K E ++++ + Sbjct: 60 ------------------------IAKETEANFMELSAVTSGKKE-INNIIEIARQNWNL 94 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V +DE+H S+ +A L +E + ++ +LSR LK Sbjct: 95 QLRTVLFVDEIHRFSKVQQDAFLPHIESGLITLIGATTENPSFEIITPLLSRVKVMTLKP 154 Query: 178 LDVEQIRHQLEHILNE--EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 L+ + I+ L + + + +++ LA + G R AL + + G+++ Sbjct: 155 LEDKDIQQILTKAIEKLAKSKLVTNESIEYLAHISSGDARVALGNLELVLGINKGKITPD 214 Query: 236 AVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 ++ L G D + +++M ++ E + + G + + + M Sbjct: 215 TINIALQKIPPTYDKNGNYHYDTISAFIKSMRGSDVEATLYYLARMINAGEDPKFIARRM 274 Query: 286 LGL 288 + Sbjct: 275 IIF 277 >UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax=Acinetobacter RepID=Q6F9X3_ACIAD Length = 331 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 123/345 (35%), Gaps = 39/345 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE+V T L + H LF G +G GK + + + C CG C +C+ Sbjct: 15 QENVWTTLTRRFPQ--VGHGLLFYGKKGCGKDAFTQHFLAWVLCTHKKPEGACGECVSCQ 72 Query: 81 EIEQGRFVDLIEIDAAS-------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 ++ + + I + K+E R+LL VQ ++V +I+ L+ Sbjct: 73 WLKSDTHPNYVHITTDEDNKKQNAKIKIEKIRELLPFVQQT--VDGWRVIVIEPAEALNI 130 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 S NALLKTLEEP E + +L KLP TI SR F L + Q L+ L+ Sbjct: 131 ASSNALLKTLEEPGERILIVLLADHYLKLPATIRSRLQHFSLDRVSTVQAHDYLQQHLDN 190 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 QLL +A+ + + + + + Sbjct: 191 ----LPSEQAQLLLNLTNNMPLEAIEVAKSDWFAKR----------------EAFLMDWI 230 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + N + + E + E L L + L L +L + Sbjct: 231 KLVHQKNMP-------LFYSSKWQKELVFSEWLTLF-EYLLCDLICVKLDQVCKNTDLDL 282 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++LA + +Y L ++ + + ++ ++ + Sbjct: 283 KDLASNYTLEVLFDFYADLQHAKQLIEQNVQSNLVMDQLFIKLMN 327 >UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YT4_LACSS Length = 330 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 133/336 (39%), Gaps = 27/336 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q ++ A ++ G++ H YL +G +GVGK +A+ LA L C+ + PC C C Sbjct: 10 QPKLVQQFAQIIARGQLAHGYLLAGAQGVGKMQLAQWLALRLFCQQVNEDSQPCYQCPEC 69 Query: 80 REIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I G D++EI K+ D R L V + ++++I+ L+ + N+ Sbjct: 70 QRILTGNHPDVVEIKPDGKSIKIADIRYLKQEVAKSGMESSQRLFIIEAAETLTASAANS 129 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP +V +L T++ + TILSR L L E +R Q E Sbjct: 130 LLKFLEEPAPNVYAILCTSNKNLMLPTILSRLQVIDLANLPKEMVRQQF------EEAQI 183 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 P QLL+ S QA Q V+ S + + + Sbjct: 184 LPAQAQLLSHLT--------SDLTQAQQLLAEDWLMQVVAK---------ITSWAQKVAQ 226 Query: 259 ANGERVMALINEAAARGIEWEA--LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + E + + + + + + ++GL ++ + A + ++ + Sbjct: 227 KDLESFVTIQTQLLPLLTDRSQQKIALNLIGLWYQDLLNCRCDLAGDLCFSEYRTQLNTI 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 ++ + +I + +L ++ + +E Sbjct: 287 SQQMTAAEIVAQTEFVLTAQRTFEQNVSCQNVLESL 322 >UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri RepID=RFCS_METKA Length = 635 Score = 154 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 29/271 (10%) Query: 95 AASRTKVEDTR-DLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 + ++ R + + + P G RFK+ +DE L+R S AL + +E + +F Sbjct: 387 NSDERGIDVIRTKVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRF 446 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 +LA + I SRC+ F L I+ +L I E + AL + +EG Sbjct: 447 ILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEG 506 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 +R A+++ QA A+ ++ V + T ++ ++ + ER L++E Sbjct: 507 DMRRAINVL-QAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHELL 565 Query: 273 -ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 G+ E ++ ++ + + IP I Sbjct: 566 TRYGMSGEDVVRQVHREIFDM-------------------------DEIPEEAIPELVNA 600 Query: 332 LLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + L D R+ +E L R A Sbjct: 601 VGDFEYRLIRGSDERIQLEALLARIHALGNE 631 Score = 83.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+V QEHV+ L ++ G + + LF+G G GKT+ A LA+ L Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPN-LLFAGPPGTGKTTAALCLARELF 69 Query: 64 CET 66 E Sbjct: 70 GEH 72 >UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-like ATPase n=2 Tax=Brachyspira RepID=C0R1V7_BRAHW Length = 431 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 130/356 (36%), Gaps = 51/356 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ +A + RP T +V GQ H+L L + +I + +F G GVGK+++A ++ Sbjct: 10 NFKPMAERMRPLTIEEVFGQHHILDKNKTLRKMIDNDKIT-SMVFFGPPGVGKSTVASII 68 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK E A + V + R+ + + Sbjct: 69 AKKTKSE-------------------------YIKLNAVLSNVSEIREAIKKAEKNLENR 103 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + IDE+H ++ +ALL +E + L +LSR + F + L Sbjct: 104 KKTILFIDEIHRFNKSQQDALLPAVENGSIILIGSTTLNPYFYLNNALLSRIMLFEFRNL 163 Query: 179 DVEQIRH-QLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIAS----- 227 D I+ L+ I ++ + E A+ L+ R + G +R A + + + + Sbjct: 164 DDNDIKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQIDE 223 Query: 228 --GDGQVSTQAVSAMLG--------TLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++ + V + + + ++++ ++ + + G + Sbjct: 224 SKEKLTITEEIVRDVTSKQSISFDEDEHYNTISAFIKSVRGSDPNAAIYYLARMLESGED 283 Query: 278 WEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + + L I + + + + + + +I + IP ++ +Y Sbjct: 284 PRYVARRLCILASEDIGLAEPNAMNIASSLVSIIDFIGMPEGRIPLAEVTIYLALC 339 >UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Tax=Trypanosomatidae RepID=Q4Q732_LEIMA Length = 354 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 116/305 (38%), Gaps = 36/305 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAK 60 + K+RP+T A+V Q+ + AL L G + H +LF G G GKT+ +A Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPH-FLFHGPPGTGKTTSILAVAH 81 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 L I + + E++A+ + R+ + Sbjct: 82 ELFGPDYIRSR------------------VRELNASDDRGISVVREKVKIFAQGAVSSSG 123 Query: 119 --------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 FK+ ++DE L + AL + +E+ + +F + ++ Sbjct: 124 SSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIID 183 Query: 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 224 I SRC ++ K L + H++E++ E I P +L L + G LR A+ A Sbjct: 184 PIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSA 243 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + +S + ++ G++ D + A+ E V+ A G +L++ Sbjct: 244 QKAKGDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQ 303 Query: 285 MLGLL 289 M L Sbjct: 304 MQHYL 308 >UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMM6_9GAMM Length = 357 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 70/356 (19%), Positives = 124/356 (34%), Gaps = 36/356 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNC 79 + V LA GR+ HA G+ G+GK+ +A A+ L C + CG C C Sbjct: 12 HQPVWDRLAACHRRGRVPHAIAVVGSAGLGKSRLAIRFAQALLCASPRSDGDGCGRCRCC 71 Query: 80 REIEQGRFVDLI----EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 G D E + K++ R L++ + + G ++V L+D ++ + Sbjct: 72 HLQAAGSHPDHYAVHPESEPGGPIKIDQIRRLIEFLMRSSQYGGYRVTLVDPADRMTLAA 131 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N+LLKTLEEPP +L +LP T+ SRC L+ R L Sbjct: 132 ANSLLKTLEEPPAAAVLILVARQFSQLPATLRSRCRLVQLQPPPAVLAREWLAEHC---- 187 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 P A+ LLA A G+ A++ + ++ + G A Sbjct: 188 ----PEAIGLLA-LAGGAPLRAMAYAQAGTEGRYAALIADLLAIVEGHRSPVLAAQNWTG 242 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + ++ L + + D ++ Sbjct: 243 IGLRDWIELLQLALAEL----------------------ARAAFTECELDRIPGRADLQT 280 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVP 371 L I + + Y + ++ R+ L + ++ +E +R L + V Sbjct: 281 LTERIDHSCLHDYMEEVVATRRILDQPLNEQLVIEDLFIRWRTATRGARLAKDRVS 336 >UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3S2_9PROT Length = 324 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 8/240 (3%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G + V L R+HHA+L G +G+GK +A L L C++ CG C Sbjct: 7 VLGHQRVELRFTEALKQQRMHHAWLLYGMKGIGKRMLAERLTGLLMCDSHND---CGECH 63 Query: 78 NCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 CR + G D+ + A +E R +L + + + G +V ++D+ L+ Sbjct: 64 GCRMLAAGSHPDVYRVGLAEGKRDVNIEQVRQMLGFLSLSGSEGERRVVILDDAERLNHQ 123 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK LEEP L+ D ++LP TI SRC+ L +R L+ L E Sbjct: 124 AANALLKGLEEPSAGSVLLMVCADLERLPATIRSRCMLQQCMPLAEHDVRRILDASLMEG 183 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + L+L AEG SL D+ IA D ++ QA+ A L D + + Sbjct: 184 DNKPDVATLELAVELAEGCPGMVASLQDKKIA--DALLAWQALIAQLDHADIGRVDEWIR 241 >UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15U04_PSEA6 Length = 300 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 12/230 (5%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-----TATPCGVCDNC 79 L L+ + +HHA L G +G+GKT A+ L + L C PCG C +C Sbjct: 9 LQQLSQRAATLSLHHALLLKGEKGIGKTEFAQQLGRFLLCANKPALSKDNLGPCGHCQSC 68 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 G DL EI + + V+ RD + + + KV LI + H ++ S NAL Sbjct: 69 LLSAAGNHPDLYEIRSDKQIGVDAIRDAIKKLSGSAQLSGAKVLLIHDAHTMTESSANAL 128 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEP + LL ++ P++L TILSRC + L + ++ L N+E A+ Sbjct: 129 LKTLEEPTNNTFLLLLSSHPERLLPTILSRCEKVALFSPTQQECIDWL----NKEGYANV 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 AL R S + ++ +GT D Sbjct: 185 DDAL---LRLYGTSPLVLIEHLKTPPKVNYQELVENLGYLNVGTADPAAL 231 >UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protein n=1 Tax=Ralstonia phage RSL1 RepID=B2ZY37_9CAUD Length = 362 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 39/315 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ RK+RP T V+GQE ++T L LS G+I A F G GKT++ R +A Sbjct: 1 MTQVAFHRKYRPTTLDRVIGQEKIVTRLKGMLSSGKIPSAIAFFGPPSAGKTTLGRCVAH 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN E+ + D E+DAA V+ RDL+ N ++ P R Sbjct: 61 ALN-----------------ELPVEKQTDYKEVDAADERGVDAVRDLIRNSRFRPQR-NK 102 Query: 121 KVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT-----ILSRCLQF 173 ++ LIDE + ++ + ALLKTLEEP +++ + +P+K T ILSRC QF Sbjct: 103 RIILIDEAQQIVSNQVAAQALLKTLEEPSPDTLWIICSMEPEKFGTTRTGKAILSRCTQF 162 Query: 174 HLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L+ + Q I E +++ E L+ L R +R +L + Sbjct: 163 VLQEPSESDLLKQAVRIAKGEGMSYAMDEERTVLKALVRGCNREMRTLANLMQALQQYYE 222 Query: 230 G------QVSTQAVSAMLGTL---DDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 G ++ T+ ++ ++ ++ DD+ A L+ + V + + + + Sbjct: 223 GLDKKPKKLGTEHLADLISSVESPDDELAADLMIGVYSKQYAAVQRALLDVSD-PYSFVK 281 Query: 281 LLVEMLGLLHRIAMV 295 + + +A+V Sbjct: 282 KCAWIAAFMLNVAVV 296 >UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=Actinomycetales RepID=D0LEI8_GORB4 Length = 431 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 125/371 (33%), Gaps = 50/371 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITATPCGVCDNCREIEQGRFVD 89 S + H++LF+G G G++ A A L C+ CG C C + G D Sbjct: 56 AASRASMTHSWLFTGPPGSGRSVAATCFAAALQCQADDPADIGCGQCRACVTVMAGTHAD 115 Query: 90 LIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + I T V+ R+++ P GR+++ ++++ L+ + NALLK +EEPP Sbjct: 116 VRSIAPDGLTLSVKSMREIVQTASRRPGTGRWQIVIVEDADRLTEQAANALLKVVEEPPS 175 Query: 149 HVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 FLL DP + VT+ SRC L + V I L +P Sbjct: 176 RTVFLLCAPSVDPDDISVTLRSRCRHVALTSPSVADIERVLVD-----RDGIDPAQAAWA 230 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML------------------------G 242 A G + A L A A +++ + A Sbjct: 231 ASVCGGHIGRARRLATDADAREQREMALRLARAATVDSTAYKAAEELVRTAEAASKAIAA 290 Query: 243 TLDDDQALSLVEAMVE-----------ANGERVMALINEAAAR-----GIEW-EALLVEM 285 L++ + + A+ + + + G + + LV++ Sbjct: 291 ELNEPELEEMKTALGAGGTGKGTARAPRGSAGAIKELEKRQKSRETRVGRDVLDRALVDL 350 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L +V + + + +A P + + +L R+ L Sbjct: 351 AALFRDALVVGVGAQVTPMHPDKADDVVIPMAGFARPEQLLQCVEAVLACREALDVNVKP 410 Query: 346 RMGVEMTLLRA 356 + V+ + Sbjct: 411 KFAVDAMVASI 421 >UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisseriaceae RepID=B4RK44_NEIG2 Length = 325 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 125/336 (37%), Gaps = 44/336 (13%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAA 96 +A+LF G +G GKT+ AR AK L CET PCG C +C +G D EI Sbjct: 21 PNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGRGSHPDFYEITPL 80 Query: 97 S----------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 + R K++ R+++DNV RG +V LI ++ + N+LLK LEEP Sbjct: 81 ADEPENGRKLLRIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEP 140 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P V FLL + K+ TI SRC + L A + L E P + L Sbjct: 141 PPQVVFLLVSHAADKVLPTIKSRCRKKVLPAPSHGEALAYLRDRGVAE-----PE--ERL 193 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 A + + +G++ + L+E + E +++ Sbjct: 194 AFHSG-----------APLFQEEGEL-------------RELRAKLLEILAEPRLLKILD 229 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 + + M L + + + A E R+ + A P ++ Sbjct: 230 YAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPV--YYPAYEDRLLQTASGFRPRNVF 287 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 L + + +M +E L+ L Sbjct: 288 AAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKE 323 >UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJE4_SORC5 Length = 331 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 75/282 (26%), Positives = 108/282 (38%), Gaps = 32/282 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ+ + L L GR+HHAY F G GVGK A L++ L C TG Sbjct: 1 MPFSHILGQDTAVGTLVRALEAGRVHHAYRFEGPPGVGKELAAVALSQALVC-TGGDPLG 59 Query: 73 CGVCDNCREIEQGR--------FVDLIE--------------IDAASRTKVEDTRDLL-D 109 CG CD CR D+ D + V+ R ++ Sbjct: 60 CGRCDACRRAAARSDGRPAAPLHPDVQIVAKNFYPAAVIGRSRDELTEISVDQVRAIVLA 119 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Y P GR +V+++ + LS + NA LKTLEEP F+L T+ +L TI SR Sbjct: 120 RAAYPPHEGRARVFIVRDAEDLSVGAANAFLKTLEEPRPGTHFILLTSRGDRLLNTIRSR 179 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L L IR L E L A GS AL L D+ + Sbjct: 180 TLPVRFAPLSEALIRRILRDRGVPEGRH------DLAVELAAGSASTALDLADEEQTASR 233 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 + V D A++ E++ + + + + Sbjct: 234 DA-FVKRVLEAAAARDLGPAVAFAESV-DRDKGALKDDLRAL 273 >UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=A6W591_KINRD Length = 392 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 142/392 (36%), Gaps = 50/392 (12%) Query: 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 + DVVGQ + L R + HA+L +G G G+++ AR A L CE + Sbjct: 4 WDDVVGQGPAVEVLTRAARAARRGTVGMTHAWLLTGPPGSGRSTAARAFAAALACEDPVE 63 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C CR G D+ + + ED L+ Q P+ R++V ++++ Sbjct: 64 IG-CGACPGCRTALAGSHADVTVFTTEHMQIRREDVEPLIATAQRRPSVARWRVVVVEDA 122 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ S N LLKT+EEPP +LL + TI SR L+ + + L Sbjct: 123 DRLNPTSGNVLLKTIEEPPPQTVWLLCAPAVDDVLPTIRSRARHVPLRVPPADAVAELLV 182 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG------------------ 230 +P ARAA+ + A L A Sbjct: 183 R-----RDGIDPVMAAFAARAAQSHVGLARRLARDEGARIRRREVLRLPQRLRGVGEAVV 237 Query: 231 ------QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW------ 278 +V+ + A D + L+ A+ V + + E Sbjct: 238 AAGELVEVAAEEAGASTTERDARERAELLRALGADGVATVPPAVRGQVRQLEEDQKRRAR 297 Query: 279 -------EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 + LV++LGLL + +VQL A + + + +R +A + P D+ Sbjct: 298 RHQTDVLDRSLVDLLGLLRDVLVVQL-GAPVELVNSDMTGDVRAMAASSTPEDVLRRADA 356 Query: 332 LLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + R+ L + +E L A H Sbjct: 357 VQLARQRLAQNVAPLLAIEALALTLRAPHRSP 388 >UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG6_ENCCU Length = 283 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 46/281 (16%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP++ G EH+ L N GR H L G G GKT+ A LLA Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNS--SGRGHPNLLLYGPPGTGKTTFAHLLASQ---- 56 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 +E++A+ + R+ + YA G+ K ++ Sbjct: 57 ------------------------KLELNASDERGISVIREKIKV--YASTLGKDKTVIL 90 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE L+ + + L + +E+ + +F+ T P K+ + SR + + Sbjct: 91 DECENLTSDAQHCLRRVIED-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTPTES----K 145 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 LE+I ++E + ++ + + LR A+++ G + +G + Sbjct: 146 ILENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQGVAPLGSFCI-----EEAVGAVP 200 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + E + RV+ + E G L+ ++ Sbjct: 201 QKTV----DMFWEVDRPRVVEYVREFLREGYSALQLIHQLA 237 >UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacteria RepID=C4KSW2_BURPS Length = 436 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 86/436 (19%), Positives = 158/436 (36%), Gaps = 57/436 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+T ADV+GQ H+L L G+ H+ + G GVGKT++ARL A Sbjct: 11 RPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGK-PHSMILWGPPGVGKTTLARLTAL 69 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR-GR 119 +CE +A V+D R+ ++ + R GR Sbjct: 70 AFDCE-------------------------FIALSAVLGGVKDIREAMEQARDTLNRTGR 104 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DE+H ++ +ALL +E V F+ ATT+ ++ +LSR + LK+ Sbjct: 105 HTILFVDEIHRFNKAQQDALLPFVE--SGLVTFIGATTENPSFEVNSALLSRAQVYVLKS 162 Query: 178 LDVEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQ----AIASGDGQ 231 L +++R L+ + +A + +A+ L A+G R L+L +Q A ++G Sbjct: 163 LAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTT 222 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 + V + + G DQ +L +++ ++ + + + G + + L Sbjct: 223 IDAAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYL 282 Query: 282 LVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 ++ + I + + ND A R+ + LY Sbjct: 283 ARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGELALAQAVLYLACAA------K 336 Query: 341 YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 E +P+ P + + P +A + Sbjct: 337 SNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETY 396 Query: 401 PTVPLPETTSQVLAAR 416 + E R Sbjct: 397 LPDGMREPRWYKPVPR 412 >UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepID=Q47N55_THEFY Length = 441 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 51/310 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S++ LA + RP+T +VVGQ H+L + L + A L G G GKT++A ++ Sbjct: 16 SHEPLAVRMRPRTLDEVVGQRHLLGEGSPLRRLVEDD-APMALLLWGPPGTGKTTLATVV 74 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PAR 117 ++ +A + V+D RD++D + R Sbjct: 75 SRATRRR-------------------------FVELSAVTSGVKDIRDVVDEARRELGMR 109 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 G + +DEVH S+ +ALL +E V F+ ATT+ + +LSR L L Sbjct: 110 GVHTLLFVDEVHRFSKTQQDALLPAVEN--RWVSFIGATTENPFFSVISPLLSRSLLLTL 167 Query: 176 KALDVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 A + IR + L +E AL L R A G R +L+ + A Sbjct: 168 HAHSDDDIRTVVRRALTDERGLAGRYTLTEEALHHLVRLAGGDARRSLTYLEAAALVAGD 227 Query: 231 --QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +++ V G D + +++M ++ + + + G + Sbjct: 228 RTEITVADVERAADRTAVRYDRSGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDP 287 Query: 279 EALLVEMLGL 288 + ++ Sbjct: 288 RFIARRLVVH 297 >UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=Psychromonas RepID=A1STW9_PSYIN Length = 342 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 11/232 (4%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V L N GR HA LF+G G+GK + + LAK L C A+ CG C +C+ E Sbjct: 18 VFKQLINTFQAGRFAHALLFTGCAGIGKFELGKHLAKYLLCSNKQAAS-CGHCHSCQLFE 76 Query: 84 QGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 +D + + +E R+L+ + P G KV +I ++L+ + NALLK Sbjct: 77 AQNHLDFHLLQNETNKSIGIEQVRNLIAKLNERPHLGDNKVVIIKNANLLTTAAANALLK 136 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP + +L T +L T+LSR HL + ++ L + + Sbjct: 137 TLEEPQGNSYLILLTRSHHQLMPTLLSRVQHTHLHTPEDTELFAWL----ALQGFNIQDI 192 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL-DDDQALSL 252 L R + S LS A + V + L + + Sbjct: 193 GL---LRLYQNSPFALLSHLQSVRAETGDDERRECVEGLFYLLSHPETLFTF 241 >UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH3_SYNAS Length = 478 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 113/314 (35%), Gaps = 53/314 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP+T + GQEH+L L + R+ + +F G G GKT++AR++ Sbjct: 37 SRRPLADRMRPETLDEFFGQEHLLKKHSLLRRAIEEDRLF-SVIFWGPPGSGKTTLARIV 95 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A G +A + V++ R +++ + Sbjct: 96 A-------------------------GETKAYFAAFSAVLSGVKELRKVVEEAEARWQNN 130 Query: 119 RFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R K V +DE+H ++ +A L +E + ++ +LSRC LK Sbjct: 131 RQKTVLFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVIAPLLSRCRVLVLKP 190 Query: 178 LDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--- 227 E + L +L + + + AL L A+G R AL+ + + Sbjct: 191 FSDEDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLAA 250 Query: 228 ---GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 ++S V L G + + +++ ++ + + + Sbjct: 251 GEGQSSRISRVQVEEALQKKGLQYDKSGAEHYNLISAFHKSLRGSDPDAALYWLGRMLTA 310 Query: 275 GIEWEALLVEMLGL 288 G + + M+ Sbjct: 311 GEDPLYIARRMVRF 324 >UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYA1_9BACE Length = 381 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 157/392 (40%), Gaps = 29/392 (7%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P +F D+VG ++++ L + LS G + +F G G+GK+S A+LLA L Sbjct: 5 PTSFDDIVGHKNLIEFLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLALELMGRDPQVLK 64 Query: 72 PCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 R I++ + + ++ + + + +++ N+ + KV ++DE H Sbjct: 65 --------RVIQENKSTESVLLYNMSINGGKDTAKEVEANLSLGLSGLDRKVIILDEAHD 116 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + L + E P+ V + TTD L T+ SR HL+ L + L Sbjct: 117 MSEAAQETFLVSTEYLPKGVYLFMCTTDSLNLKATLKSRAFTLHLQHLTQADMVSLLTRY 176 Query: 191 LNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + + + + A +Q++A A+G R AL+L + + VS+ + + L D Sbjct: 177 VRDRGLRLQAEASTIQMIAAWADGKPRIALNLIEG--FAPGSAVSSATIKEFIDYLSVDD 234 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L ++ + + + + +++I+E G ++ +L I V+ A+ + Sbjct: 235 VLPVL-SCLSGSMTQGLSVISEMKLNGS--------LVPILVEILKVKSGMASFKLSLTD 285 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368 + R+R + + + L+ +L R G+ L++ + P P Sbjct: 286 VH-RIRAQLNGVSVETLTKFIY-LVAALPKLS-----RTGLISAFLQSHTDRSFLSSPPP 338 Query: 369 EVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + T AP + Sbjct: 339 KTEVLQSEMQQKLSAPTQDIAEASRPCAPSIS 370 >UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepID=A3DD23_CLOTH Length = 432 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 116/310 (37%), Gaps = 53/310 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T + GQE ++ L + RI + + G G GKTS+AR+ Sbjct: 6 EPLAYRMRPRTLEEFYGQEEIVGEGKLLNRMIKADRIS-SIILYGPPGTGKTSLARI--- 61 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR- 119 I + E A V D + ++ + Q + Sbjct: 62 ---------------------IANSTKANF-EKLNAVTAGVADIKRIVSDTQNPILNPKG 99 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 V IDE+H ++ +ALL +E+ + ++ ++SR F LK L Sbjct: 100 RTVLFIDEIHRFNKSQQDALLPYVEDGTIILVGATTENPFFEVNKALISRSSVFMLKPLG 159 Query: 180 VEQIRHQLEHIL-NEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAI------A 226 + I+ + + L ++E I E AL LA +G R AL+ + A+ + Sbjct: 160 SDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICDGDARIALNALELAVLTSPVGS 219 Query: 227 SGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 G + Q + + G D + +++M ++ + + + A G Sbjct: 220 DGKFHIDIQLIEECIQKKAARYDKSGEEHYDNISAFIKSMRGSDPDAAVFYLARALYAGE 279 Query: 277 EWEALLVEML 286 + L ++ Sbjct: 280 DPMFLARRIM 289 >UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DZ6_DECAR Length = 339 Score = 152 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 131/355 (36%), Gaps = 41/355 (11%) Query: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCRE 81 H L R+ H+ L G +G+GK +AR A L CE+ CG C C Sbjct: 7 HSKVWLGLQARRERLPHSLLLVGQKGLGKFELARRFAASLLCESPQSNGLACGKCLACNW 66 Query: 82 IEQGRFVDLI----------------EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 EQG D + + + ++ R L + RG ++ ++ Sbjct: 67 FEQGNHPDFRLLQPDALGEDVEVEDGKKKPSQQITIDQVRALDEFFNVGTHRGGLRIVIV 126 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 + ++R + N+LLKTLEEP FLL +++P +L TI SRC + Sbjct: 127 NPTEAMNRSTANSLLKTLEEPSADTLFLLVSSEPMRLLPTIRSRCQVVPVPVPS----AK 182 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 IL +E + R L A GS AL L A+ + + A LG Sbjct: 183 LAGKILADEGLQQSERWLA----LAGGSPVLALDL-----AASGQSAWIELLVARLGNGR 233 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + L++ + +A + L+ + G+ L + + + Sbjct: 234 NADPLAMAAELEKAVKDSKGKLLLKHVVEGV---------QKWLVDLTLAKNG--MPVRY 282 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA IP + Y+ ++ R+E + R+ +E L A Sbjct: 283 FLPQQPTISGLADMIPAARLIHSYRAVISRRQEAEQPLNARLFLEGLFLDYRALF 337 >UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Corynebacterium glucuronolyticum RepID=C2GG64_9CORY Length = 403 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 130/408 (31%), Gaps = 96/408 (23%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---------------------------- 68 + HA+L +G G G++++AR A L C + Sbjct: 1 MTHAWLITGPPGSGRSTMARHFAAALLCTADVVGGSGACDDAGGSGARDDAGGSGVRDDA 60 Query: 69 ---------------TATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQ 112 TPCG C+ CR+ G +DL + VED R ++ Sbjct: 61 DGSGVRDDADGSGACDGTPCGQCEGCRQALNGSHLDLTVVHPTELSISVEDMRAVIRGAS 120 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRC 170 P G F+V +I++ L+ + N+LLKT+EEPPE +L +TDP+ + T++SRC Sbjct: 121 RTPTVGAFRVVIIEDADRLTPAAGNSLLKTVEEPPERTVIILCAPSTDPEDMLQTLVSRC 180 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 ++ E++ E L A A G + A L Sbjct: 181 RHVYIPTPSFEEVA------ATVEASGVPHDQALLAAHATAGHIGRARHLAQDPTTQRRR 234 Query: 231 QVSTQAVSAMLGTLD----------------DDQALSLVEA------------------- 255 + D + L++A Sbjct: 235 ARMLHLAELLFSGSDAYLEVTSLLSDVESDVKARIKELLDADLERTRLTLGAGGSGKGTG 294 Query: 256 MVEANGERVMALINEAAAR------GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 V ++ + + + + LL++ + L A+ Q + A L Sbjct: 295 GVMRGTADILKKVEQKYKKQQTRELRDTIDQLLMDFIALFRD-AIAQRAGAPLL--HTDF 351 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++LA + + T+ R+ + R + + Sbjct: 352 AGDSQDLAARLSDAQLIATIDTIGRARERITRNVTPRTALFAMIGEIR 399 >UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Rickettsiella grylli RepID=A8PMJ4_9COXI Length = 324 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 120/339 (35%), Gaps = 37/339 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 L GR+ HA LF+G G+GK+ A AK L C+ + C C +C Sbjct: 11 HTQQWQQLYRSHQEGRLSHALLFAGQMGLGKSLFALHFAKTLLCKQPKQSRACQACRDCI 70 Query: 81 EIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G DL + K++ RD+ D + + + +K+ +I+ L + Sbjct: 71 LVAAGTHPDLSLLTTEKSTQGIKIDQIRDITDKLNHTS-QATYKIIVINPADSLLVAASQ 129 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK+LEEP F+L T + L TI SRC L L Sbjct: 130 ALLKSLEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFNPPKKSLAMAWLAQQL------ 183 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 AL L + G+ A+ ++ LV ++ Sbjct: 184 -PASALDTLYHLSSGAPLLAVRYAEEGYPL--------------------FYADLVHSLA 222 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + + + A + + LL +L + +L L A + LA Sbjct: 223 QLVNQTLNPIRCAAKYLKTDIQQLLSALLN-----LLNELLKCQLLRGYTATIDSIAHLA 277 Query: 318 RTIPPTDIQLYYQTLLIGRKEL-PYAPDRRMGVEMTLLR 355 R + + YY ++I R + + + ++ L R Sbjct: 278 RVLSTDFLLQYYDRIMILRARMVNVTLNVSLVLDDLLSR 316 >UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria RepID=Q3B4X4_PELLD Length = 457 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 121/309 (39%), Gaps = 48/309 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RPQ+ ++ GQEH++ L L G++ + +F G G GKT++A + Sbjct: 23 AFQPLAERVRPQSIDEMAGQEHLVGPMGPLRRFLGGGQLP-SMIFWGPPGSGKTTLAEI- 80 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 C + + E +A + V+D R +L+N + ARG Sbjct: 81 -----------------CASALDFR-------FEQLSAIESGVKDVRRVLENAASSRARG 116 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + IDE+H ++ + LL +E+ + ++ +LSR + LK+L Sbjct: 117 IRTLLFIDEIHRFNKSQQDTLLHAIEQGVVVLIGATTENPSFEINAALLSRMQVYTLKSL 176 Query: 179 DVEQIRHQLEHILNEEHIAHEP----RALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 E IR + L+ + + + ++ L R + G R AL+ + A Sbjct: 177 GPEDIRLVVTRALSVDPLFRDRHVQVEDMEFLLRFSGGDARKALNALEAAFLLIAEDEDP 236 Query: 235 QAV-SAML--------------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 + +L G + + +++M ++ + + + G + Sbjct: 237 ALIGRDLLERALQHRAPIYDHGGEAHYNTVSAFIKSMRGSDPDAALFWLARMIEGGEDPR 296 Query: 280 ALLVEMLGL 288 + ++ Sbjct: 297 FIARRLVIF 305 >UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit n=2 Tax=Bacteria RepID=C3JCU0_9PORP Length = 385 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 132/388 (34%), Gaps = 63/388 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++G E + L + G I H LF G+ +A + LNC Sbjct: 1 MQFRDIIGYESLKEELRRISATGHIPHNILFDIEDGMPGVGLALAWIQYLNCSDPHHGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRD----------------- 106 CGVC +C+ + Q + D+ I + S + R+ Sbjct: 61 CGVCPHCKMLSQLSYPDVHYIFPVVNATDVETPSDNFLSQWREMFAAEGAYFDHETWLRY 120 Query: 107 -----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 L + + A + G +++ +I E ++ + N LLK +EEPP+ Sbjct: 121 LNAGKQQPVIYSKDAIALENKLSIASSEGGYRMVIIYEPDRMNEAAANKLLKLMEEPPDK 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 + ++L TILSR +F L L ++++ L + + R L A Sbjct: 181 TIIVSVCFATEQLLETILSRMQRFELLPLTQDELKMGLRQFYPQ----AQERDLLRAALR 236 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 ++G L A + S + G L+ +V + + L Sbjct: 237 SDGILLRARQIL-------ANNTSIAKYTECFG--------QLIGDIVRKDVVALRKLSE 281 Query: 270 EAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + + G EW A LV + A + L I P +I+ Sbjct: 282 KMDSEGREWIVAALVYFEECFRLSFTGNFTGAGTQFSTDREQAIFIALNEVITPANIESI 341 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRA 356 Y+T + + +M + T LR Sbjct: 342 YRTTESAIRHVRGNVSAKMVLFDTFLRY 369 >UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696_ARATH Length = 525 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 52/314 (16%) Query: 3 YQVLARKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q L+ + RP+T DVVGQ+H + L + + R+ + +F G G GKTSIA+ L Sbjct: 100 HQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLP-SIVFWGPPGTGKTSIAKSLI 158 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + +A + V+D RD +++ + GR Sbjct: 159 NS---------------------SKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + V +DEVH ++ + L +E+ + F+ ATT+ L +LSRC L Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGS--ILFIGATTENPSFHLITPLLSRCRVLTLN 255 Query: 177 ALDVEQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI----- 225 L + L +++ + + ++ LA +G R AL+ + + Sbjct: 256 PLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATT 315 Query: 226 -ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A D VS L G + +L ++M + + + Sbjct: 316 RAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEG 375 Query: 275 GIEWEALLVEMLGL 288 G E + ++ Sbjct: 376 GEEPLYIARRLIRF 389 >UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMF7_MOOTA Length = 284 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 114/343 (33%), Gaps = 70/343 (20%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L G++ HAYL G G+ + A LA LNC PCG C +CR++ G Sbjct: 5 QQLKQALLAGKLAHAYLLVGGSEEGRRAEAIYLATALNCRYLQGGEPCGSCHSCRQMAGG 64 Query: 86 RFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D ++ + K+ R+L + +G KV ++ ++ + N LLKTLE Sbjct: 65 NHPDFYLLEPRGTNLKIAQIRELEARLALQAFQGGVKVAVLAGADTMTEAAANCLLKTLE 124 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPPE +L P L TI SRC + HL Sbjct: 125 EPPEGTYLILLAAQPDPLLPTIRSRCQEIHL-------------------------EGAM 159 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 +++A G V+A L + ++ L Sbjct: 160 AISQAGTGYWAR-------------------LVAADLPVIMEEILPEL------------ 188 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 + + A+L M + QL+ +A + P+ Sbjct: 189 --------EKEADLPAVLTGMALACRDQLVWQLTGSATLLLKPGEPPT-----PFLAPSR 235 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 + + T+ L + + R+ +E+ + + + Sbjct: 236 LWACFWTIQDTLAALEHNANHRLALEVMMFKLYTQFSGEAIHG 278 >UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MP27_BDEBA Length = 314 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 69/338 (20%), Positives = 122/338 (36%), Gaps = 38/338 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 V+G + + + G+ +LF G G+GK A LA+ L C + CG Sbjct: 5 LDFVLGHQETIKKMVESFENGKPGQTFLFVGPGGIGKKLTAMGLAQALLCPSSPRG--CG 62 Query: 75 VCDNCREIEQGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +C I QG L + K+E +++L+ + G +V +ID+ L+ Sbjct: 63 KCPSCFRISQGSHEGLKLIAPNGANIKMEQAKEVLEFLSLKSLTGN-RVIVIDQAQTLNP 121 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N+LLKTLEEPPE F L + TI SR + L E + +++ Sbjct: 122 QAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFRPLTQEDLGKRVK----- 176 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 A +AA GS Q + +V +AV + Sbjct: 177 --------APAWALKAAGGSFEK----LAQLQDGPEQEVREKAVELLT------------ 212 Query: 254 EAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + + ++ + + + ++ +G L A+ A Sbjct: 213 --LFIQDADFLLNELWRNEFKDRAQGQRMISYWIGFLKD-AICLQEGAKTQIVNLDQAPL 269 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 ++ LA + I Q L + D ++ +E Sbjct: 270 IKVLAE-LERPRILNLIQKALQVEQAFAANRDPQLIIE 306 >UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalobacteraceae RepID=A6SZH8_JANMA Length = 344 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 115/352 (32%), Gaps = 61/352 (17%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIE 92 R+ HA LF G G+GKT+ A A+ L CET CG C C Q D Sbjct: 20 RERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACGSCIACGWFTQYSHPDYRR 79 Query: 93 ID----------------------------AASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + + K++ R L D + + R +V + Sbjct: 80 VRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRALGDFMNISTHRSGMRVVV 139 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + +L+ + N+LLK LEEPP FLL + +L TILSRC +F L ++ Sbjct: 140 LYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGRDEAL 199 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L+ E +G A QA Sbjct: 200 QWLKSQQVSEADGWLAE---------QGGAPLAAFDASQAGM------------------ 232 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + + + + + + L+ + L+ + V+LS Sbjct: 233 -RETMDDFLRQLAQPGVDGALKAADRLQKTPV--PELVAWLQRWLYDVLSVKLSGT--IR 287 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + LA+ + + + + R + ++ +E LL Sbjct: 288 YYPRYKKELGALAQRVETAALLQEIKAVNDRRAIAEHPLAPKLFIEDMLLEY 339 >UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuniibacter caesariensis RepID=Q2BG76_9GAMM Length = 295 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 106/300 (35%), Gaps = 28/300 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA R+ HA L G +G+GK A+ A+ L C+ + CGVC +C G Sbjct: 16 KHLAELHRQKRLPHALLIHGMQGIGKALFAKSFAQMLLCQQPESGKACGVCKSCELNAAG 75 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL + + KV+ R L + + +G ++V +ID ++ S NALLK Sbjct: 76 SHPDLFILQPEEAGKQLKVDQVRALGEFIYSTAQQGGYRVVVIDPADSMNIASANALLKM 135 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP LL T+ ++ TI SRC D E L E + Sbjct: 136 LEEPGSDTLLLLVTSKMGQVLPTIKSRCQHIECVTPDTEVAISWLM----SEG-DLDEER 190 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + + G+ ++AL+ + LG L + + + Sbjct: 191 ARGVLTINRGAPKEALAYLNNN----------------LGEDRAQLIRGLADILKQRRSP 234 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 +A + + L + IA L + +A+ + P Sbjct: 235 LEVAQAWQKLDLELLLGWLYSLLT----DIARGALCENDDSVRHEDARNMLNAVAKKLTP 290 >UniRef50_Q5UQ72 Putative replication factor C small subunit L510 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS4_MIMIV Length = 363 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 109/314 (34%), Gaps = 43/314 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+ +++L N G + H +LF G G GKTS + + + Sbjct: 7 VPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTH-FLFYGPPGTGKTSAILAMGREIF 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-NVQYAPARGRFKV 122 E R IE D + E + + + ++ +K+ Sbjct: 66 KEHFQN----------RVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKI 115 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE ++ + +AL +E+ +F K+ I SRC + K L E Sbjct: 116 IILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDEC 175 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ------------------- 223 + +L I +E + L + + G +R A+ L Sbjct: 176 MVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKNLTKKLKDMT 235 Query: 224 ------AIASGDG-----QVSTQAVSAMLGTLDDDQALSLVEA-MVEANGERVMALINEA 271 + +S + V + ++ D+A +++ + N V L + Sbjct: 236 LLELKTILFMTKKSSITSTISEEDVYEISASITLDKAKGIIDDTIDCNNIVEVSNLSKKI 295 Query: 272 AARGIEWEALLVEM 285 A G + +L ++ Sbjct: 296 IAMGFPIDNILTQL 309 >UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacillus cereus group RepID=C2TQM1_BACCE Length = 339 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 125/347 (36%), Gaps = 27/347 (7%) Query: 14 TFADVVGQEHVL-TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++ +V+ ++H++ T L NGL +++HAYLF+G G K A L K L C P Sbjct: 9 SWNEVMQKQHIVGTILKNGLVNNKVNHAYLFNGEAGTLKKETALLFIKSLFCLENTERIP 68 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 C C NC I D++ I K E + L + Y K+YLID V M Sbjct: 69 CNDCRNCNRINNNIHPDVVIISPEEGGSIKKEQIQQLHKEISYTSTELSRKIYLIDRVEM 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + N+LLK LEEP + +L T + QK+ TI SRC + + + +L Sbjct: 129 LTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTIQSRCQILNFLDTPLGEYEEELSAA 188 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 ++LL R ++ A+SL + ++ + + Sbjct: 189 ------NLSQDIVKLLTRMTN-NIDKAMSLARDQWFIDLHSQVACLMKNLMEPAVYIEII 241 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L++ + E ++ + L+ + Sbjct: 242 KLLKLIDSKEKEPILFKFINI----------------WFKDVL-YALTKKKGFISFQSQI 284 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + I + L G + ++ ++ Sbjct: 285 NILELHAEKLGVKGIADAIELLEKGYIRRQANVSLNLVLQEMFIKLQ 331 >UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycetaceae RepID=WRIP1_YEAST Length = 587 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 152/396 (38%), Gaps = 71/396 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT----ALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 S+ L+ K RP+ D VGQ+H+L+ L + G I + + G GVGKTS+ARL Sbjct: 131 SHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIP-SMILWGPPGVGKTSLARL 189 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 L K + + + +A++ ++ R + + + Sbjct: 190 LTKTATTSSNESNV--------------GSRYFMIETSATKANTQELRGIFEKSKKEYQL 235 Query: 118 GRFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFH 174 + + V IDE+H ++ + LL +E + + ATT+ +L ++SRCL F Sbjct: 236 TKRRTVLFIDEIHRFNKVQQDLLLPHVEN--GDIILIGATTENPSFQLNNALISRCLIFV 293 Query: 175 LKALDVEQIRHQL-----------EHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTD 222 L+ L+V ++ L + + N E+ + L+ + + G R AL++ + Sbjct: 294 LEKLNVNELCIVLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLE 353 Query: 223 ------QAIASGDGQVSTQAVSAML---------------GTLDDDQALSLVEAMVEANG 261 + + + ++S V ++ G D + +++ + Sbjct: 354 MIEVSTRERKADEEELSIDDVRDIIKNNSSNGLNTYYDPKGDNHYDTISAFHKSIRGGDE 413 Query: 262 ERVMALINEAAARGIEWEALLVEMLGL------LHRIAMVQLSPAALGNDM----AAIEL 311 + + G + + M+ + L +++ L+ AA M +L Sbjct: 414 NASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRDSSLLPLAVAAHDAVMKVGLPEADL 473 Query: 312 RMRE----LARTIPPTDIQLYYQTLLIGRKELPYAP 343 + + LAR ++ ++ L E Y+ Sbjct: 474 ALAQCCVALARAPKSVELYRAWKKLRAMMSENMYSL 509 >UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxiella burnetii RepID=A9NBZ0_COXBR Length = 319 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 123/327 (37%), Gaps = 30/327 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q+ + GR+ HA L +G+ G+GK A+ +A+ + CE CG C C+ Sbjct: 6 QQTQWQEILTRYRQGRLPHALLLTGSPGLGKFDFAKAVAEFILCEA-QDGGVCGSCRGCQ 64 Query: 81 EIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D + + + K+ R+L++ + ++V +I ++R + N Sbjct: 65 LFRAGNHPDFFKLIPEEKSKNIKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAAN 124 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A LKTLEEP + +L + P L TILSRC + A E L+ + Sbjct: 125 AFLKTLEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQKQIE----- 179 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 G R+A+ L A+ + + ++ T D+ L L+ + Sbjct: 180 --------------GDRREAIQLL---TAASYAPLQALQLKSLNYTEVRDRLLQLIINLT 222 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 V + +L ++ + + +QL + + ++EL+ Sbjct: 223 AQRENAVSVAGTLL---KEDLPFVLQVLILIAMDLLRLQLKATNFV-VNSDQLILLQELS 278 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPD 344 +P I L Q L + + Sbjct: 279 TALPQNKIMLLLQELQEAWRLTKNSLS 305 >UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n=3 Tax=Rhodocyclaceae RepID=Q5P0G2_AZOSE Length = 353 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 129/364 (35%), Gaps = 50/364 (13%) Query: 21 QEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDN 78 + ++LG R+ HA LF G G+GK +A LA L C T C C Sbjct: 3 HPWLQETWQRLVALGERLPHALLFVGPAGLGKRDLADALAARLLCATPRPDGCACDRCTT 62 Query: 79 CREIEQGRFVDLIE--------------------------IDAASRTKVEDTRDLLDNVQ 112 C+ G DL +++ +E RDL ++ Sbjct: 63 CQLRRSGNHPDLFMIVPAADMEAGNGDESREGGERDIGSAKKKSTQIVIEQIRDLQQSLS 122 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + +V ++D ++ ++ NALLK LEEPP F+L ++ P++L TI SRC Q Sbjct: 123 VTGHQSGRRVIVVDPAEAMNPYTANALLKLLEEPPAGCLFVLVSSAPRRLLPTIRSRCQQ 182 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + + + L E A LLA G A L Q G G + Sbjct: 183 WSFSQPATDVVGQWLG--------TQEAPAADLLA-LTGGMPLAAQRLAGQ----GAGAL 229 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + V + D + A EA A G L+ M + + Sbjct: 230 LARFVRDVAQLPATDP-------LQLAGQWEAWLKSKEALAAGFGIVQLVEWMQRWVTDL 282 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A ++L E +R LA+ + Y R+ + + R+ +E Sbjct: 283 ASLRLGG--RVRFFPREEEVVRALAQRSNVAAVLNCYNEFARIRRVAQHPLNARLMLEDM 340 Query: 353 LLRA 356 LLR Sbjct: 341 LLRY 344 >UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosomonadaceae RepID=Q2Y982_NITMU Length = 368 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 85/396 (21%) Query: 16 ADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPC 73 +++ G QE V L + HA L G +G+GK + AR LAK CE + C Sbjct: 2 SNIYGWQEEVWRKLTGA-----LGHALLLRGRKGLGKLAFARYLAKSRLCENRSVEGKAC 56 Query: 74 GVCDNCREIEQGRFVDLIEIDA-------------------------------------- 95 VC +C EQG D ++ Sbjct: 57 EVCASCHWFEQGNHPDFCLVEPEAATATSVSGEGAGEEGVETGDEAEVQSLPRAVNQLSG 116 Query: 96 --------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + + + R+L D V + +K+ LI +S + +ALLK LEEPP Sbjct: 117 SGKSTKKPSRQISISQIRELGDFVNITSHQNGYKIILIHPAETMSTAAASALLKNLEEPP 176 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 F+L T Q L TI SRC Q + A D L+ + A + Sbjct: 177 LQTLFILITHQAQYLLPTIRSRCRQIIMPAPDAASAALWLKQQGVK--------APERCL 228 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 +A + AL ++ + ++ + +G V+A Sbjct: 229 ASAGYAPLTALEFANEDYLVRH--------------------SAFIQQISTPSGFDVLAR 268 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 E + ++ + + + +++ + +++ LA + P + Sbjct: 269 AEEMQKS--DLVMVVSWLQKWCYDLMSFRMAQK--VRYHPDMLAQIKPLASGLDPYSMAT 324 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 Y + L ++ + + R+ +E L + Sbjct: 325 YLRALDKTQQLARHPLNPRLFLEELLFSYVTMLSEK 360 >UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=Polynucleobacter necessarius RepID=A4SXG7_POLSQ Length = 377 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 134/390 (34%), Gaps = 53/390 (13%) Query: 13 QTFADVVGQEHV-LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA 70 ++ GQ L L + L +A + G G+GK ++A LAK L CE+ Sbjct: 1 MNLSNSPGQVAPWLQPLWDSLDFSNFPNALILHGQSGIGKFNLAVELAKALVCESTSSEH 60 Query: 71 TPCGVCDNCREIEQGRFVDLI-------------------------------------EI 93 PC C+ C G D I E Sbjct: 61 KPCNHCEACHWFSTGNHPDFIALVPETHRRLLPHAEYASDEPPKKGRAARDDLDGEASEK 120 Query: 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 +E+TR ++++ RG +V LI + ML S N LLK+LEEPP + F+ Sbjct: 121 KEKKNISIEETRHAIESLSIGSHRGGNRVILIYPLEMLRHDSANTLLKSLEEPPANTIFI 180 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE-HILNEEHIAHEPRALQLLARAAEG 212 L ++ TI SRC D EQ L+ + N I + + G Sbjct: 181 LLADRVDRVLPTIRSRCRLLTAPRPDREQGVAWLKSQLANLSDIKINDADIDTIYDEQGG 240 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 + ++ D IA + + A+ + L+++M + + + Sbjct: 241 APY---AVLDSLIARHNKDDKDELTIAIQASRL------LLQSMSQGGRMPWLETAEKI- 290 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ LL M + + V + L++++ + +++ L Sbjct: 291 -HKAQYSFLLATMQRWVSDLQTVAQGGTPR--YYPKHLNTLNALSQSVRIAKLLQFWKAL 347 Query: 333 LIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + R+ + R+ +E L + Sbjct: 348 IQARRSENHPLASRIQLEALLSQYQQAFEG 377 >UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9REP7_PHYPA Length = 366 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 4/274 (1%) Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P R+KV +++ +L+ +NA L LEEPP+ V F+L TTD +++P T SRC Sbjct: 3 SLKPH-ARYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQ 61 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 +FH + I +LE++ +E + E AL L+A ++GSLRDA+ L DQ D Sbjct: 62 KFHFSKVSEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQV-CLLDKN 120 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 VS V + G ++ L L++ + A+ + + E A +E L+ ++ GL+ Sbjct: 121 VSVDLVREVGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITD 180 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 I L R + + ++ + L +L A D+ + Sbjct: 181 ILAGSLEVDRG--SRKDGSFFNRNFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTA 238 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 LL+ +P + A + Sbjct: 239 ALLQFAPDRSFLPSEASTDVALTSARPSTKTSEP 272 >UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K1T7_SCHJY Length = 514 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 53/306 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T D VGQE ++ + N + + + G GVGKT++AR++AK Sbjct: 87 RPLAERVRPKTLDDYVGQESLVGKGGIIRNLIERDECP-SMILWGNSGVGKTTLARIIAK 145 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGR 119 + A+ V D R + + Q G+ Sbjct: 146 TTGAHFLEVS-------------------------ATSASVSDCRKIFEESQNLLRLTGK 180 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH +R + L +E+ L+ +L +LSRC F LD Sbjct: 181 KTIVFLDEVHRFNRAQQDIFLPMVEKG------LITLNPSFRLNSALLSRCSVFTFNVLD 234 Query: 180 VEQIRHQLEHILNEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 + + L + E + + LQ ++ +G R AL+ + A+ G V Sbjct: 235 KDNVLSILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCLEIALGMLEGGSV 294 Query: 233 STQA----------VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S V G D + +++ ++ + + + G + + Sbjct: 295 SLPDLKKKFARSFSVYDSTGDAHYDTISAFHKSIRGSDVDAALYYLCRMLESGEDPLYVA 354 Query: 283 VEMLGL 288 M+ + Sbjct: 355 RRMVRI 360 >UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=Lactococcus lactis RepID=D2BNT0_LACLK Length = 286 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 113/284 (39%), Gaps = 14/284 (4%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 D+ Q + + L G++ HAYLFSG G G +A L++ L CE + P Sbjct: 1 MEIKDI--QPQLYKQFSTILQHGKLSHAYLFSG--GFGSFELAIWLSQALFCENPENSLP 56 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR + Q F DL ++ + K R+L + G+ +V LI E + Sbjct: 57 CGHCRSCRLVAQQEFTDLHIVEPDGQTIKTAQIRELTQVFNESGYEGKQQVILIKEAEKM 116 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ NALLK++EEP + L T + + TI SR + L+ L Sbjct: 117 HPNAANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINFPKN-----VQYLQDFL 171 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + I L LA S AL L Q+ + Q Q V + + D+ Sbjct: 172 EKNGILKTQAEL--LAEICN-STDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLY- 227 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 L E + + + E + E + E+L I M Sbjct: 228 LKELVEIFDDKEKQNQAFELLLQLFNQERMSQELLKTFQAIKMW 271 >UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C8NXE7_9CORY Length = 439 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 83/412 (20%), Positives = 145/412 (35%), Gaps = 60/412 (14%) Query: 16 ADVVGQEHVLTALANGLSLGR---------IHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 + G V + + R + H++LF+G G G+++ A A L CE+ Sbjct: 19 ERLAGTPSVRETILGAAAAARGVPGADPHAMTHSWLFTGPPGAGRSTAAVAFAAALVCES 78 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRD-LLDNVQYAPARGRFKVYL 124 A CG C CR++ G D++ I ++ RD ++ P ++V + Sbjct: 79 PADALGCGHCQACRDVFAGAHTDVVHIVPEGMTISIDTVRDTIIPAATRLPTVANWRVII 138 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQ 182 I++ SR + A+LKT+EEPPE ++ +TDPQ VT+ SRC ++ A V++ Sbjct: 139 IEDADRFSREAPEAILKTVEEPPETTVIIMCAPSTDPQDFSVTLRSRCRHLYVPAPSVDE 198 Query: 183 IRHQLEHILNEEHIAHEPRA-------LQLLAR--------AAEGSLRDALSLTD----- 222 I IL E A EP A L+ + R A++ A+++ + Sbjct: 199 IV----RILVSEEGAAEPDARLAAVTSLRHIGRARRLVNSDASQKRRAAAINIAELVFHG 254 Query: 223 ----QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE-----------ANGERVMAL 267 Q +A+ + + D+++ L A+ + Sbjct: 255 DQAFQGVAALVKSADAE-AKDAYASSDEEERKRLENALGMGAKGKGAAKALRGTASSLKE 313 Query: 268 INEAAARG-----IEWEAL-LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + A + L LV++ G+ + + E E+A Sbjct: 314 LEAAQKARGTRRLRDVLDLTLVDLAGIYRDAMITSSGGG-VPLVHPDFEGLSTEIANHAD 372 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQ 373 I + R L + L R P P Q Sbjct: 373 LAGITECLDAVAECRARLHQNVMPVIAFNGMLGRIRIACGVSSSPHPAAELQ 424 >UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Corynebacterium RepID=Q8NTJ5_CORGL Length = 419 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 130/374 (34%), Gaps = 51/374 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 + ++LF+G G G++ A++ A L C CG C++CR G D+ Sbjct: 50 MIHDSGFAQSWLFTGPPGSGRSVAAKVFAATLVCSN-PDVVGCGQCEDCRAAMGGSHPDI 108 Query: 91 -IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + V+ R+++ +P G ++V + + L+ + NALLKT+EEP E Sbjct: 109 EHIVPQQLSIGVDAAREVIKAAAVSPVAGNWRVVIFENADRLTMQAANALLKTVEEPTES 168 Query: 150 VKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 +L TTDP+ + +T+ SRC ++ + ++ IL E +L A Sbjct: 169 TVMILCAPTTDPRDIAITLRSRCRHLYIPTPSIAEVA----RILVAEG-NVSQADAELAA 223 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMV--------- 257 A+ + A L A + G + +LV+ + Sbjct: 224 AASGAHIGRARYLAHNNAAQRRRASILNLAELIFHGDVAFRSVNTLVKMVETEAKDSNKE 283 Query: 258 -----------------------------EANGERVMAL--INEAAARGIEWEALLVEML 286 + + + + + LV++ Sbjct: 284 KEEAELEAVRISLGMGAKGKGVHKAVRGGAGDFKALEDQQKLRRTRFLRDSLDLALVDLA 343 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 G+ ++ S A +G +E +ELA + + + R+ + Sbjct: 344 GIYRDAIIIS-SQAQVGLTHPDMEGLSQELATKVSQEGLLACLDAISKCRESFGFNVRPI 402 Query: 347 MGVEMTLLRALAFH 360 + ++ + R + Sbjct: 403 VAMDALVGRLRKAY 416 >UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEP6_9DELT Length = 393 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 8/234 (3%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F VVG V L+ ++ R+HH +FSG RG+GK ++AR LA L C C Sbjct: 10 RFPGVVGHGRVTAMLSRAIARSRLHHGLVFSGPRGIGKATLARGLACALTCAVSPAVG-C 68 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD---NVQYAPARGRFKVYLIDEVHM 130 G CD+CR + G D ++ +++ T + VQ+AP V +ID Sbjct: 69 GQCDSCRRMLCGLHTDFTVLEGQGKSRTVATGPAREVALRVQHAPFEAAAHVIVIDPADR 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ----IRHQ 186 + + ALLK++EEP V ++L T+ + TILSRC+ L+AL+ E + + Sbjct: 129 MHPAAAAALLKSIEEPRPGVHWVLLATNLHDILDTILSRCMTIPLEALNTEDTRSVVDAE 188 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE + + +PR +L A GS AL L A ++ + A+ Sbjct: 189 LERLAQARGLEVDPRRRELAISLAGGSPGVALELLSDASLEPTKELLAATLRAL 242 >UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=Staphylococcus RepID=Q49UZ3_STAS1 Length = 309 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 123/335 (36%), Gaps = 37/335 (11%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L ++ HAYLF G G +A K + C C ++E Sbjct: 6 ERLTKAYQSNKLSHAYLFEGDDGQTMQQVAIDFTKLILCNGDY------QCQ--LKVETF 57 Query: 86 RFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D + I + K + L+ ++ P G +KVY+I+ L+ N++LK LE Sbjct: 58 NHPDFMYISSEETTIKKDQVEQLVHHMNQLPIEGDYKVYIIESFEKLTVQGENSILKFLE 117 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 +PPE+ +L TT P+++ TI SRC + K +D + ++L E + Sbjct: 118 DPPENTIAILLTTKPEQILDTIHSRCQHVYFKPIDKTKFINRL----------VEREITK 167 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 +A L + V+ + ++ + + ++ + Sbjct: 168 PVAE-----------LLSTYTTQIEVAVTLNEETDLMAL--RKSVVKWCQLLLTNRSMAL 214 Query: 265 MALINEAAARGIEWEALLVEML---GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 +A++ + + + LV + G + ++ ++ ++ ++ + Sbjct: 215 IAIV-DLLKQAKNRKLQLVTLAAVNGFFEDVMHAKVGMDQDMIYH-DLKEDIKAFSKKLT 272 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 I L Y + K+L + + E +++ Sbjct: 273 YNQIILMYDQITEAHKKLNQNVNPMLVFEQIVIKR 307 >UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria RepID=Q480Q0_COLP3 Length = 511 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 134/370 (36%), Gaps = 82/370 (22%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S+ LA K RP+T AD VGQ+H+L + LA + G H+ +F G G GKT++A ++ Sbjct: 55 SFMPLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHC-HSLIFWGPPGSGKTTLAEII 113 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-- 116 A+ N E IE +A + +++ R ++ + Sbjct: 114 AQHANAE-------------------------IERVSAVTSGIKEIRSAIEKAKLRAQGE 148 Query: 117 --RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQ 172 R V +DEVH ++ +A L +E+ + F+ ATT+ +L +LSR Sbjct: 149 GANKRRTVLFVDEVHRFNKSQQDAFLPHIED--GTIIFIGATTENPAFELNQALLSRARL 206 Query: 173 FHLKALDVEQIRHQLEH---ILNEEH---IAHEPRALQLLARAAEGSLRDALSLT----- 221 + LK L + + L+ + E I A Q L ++G R L+L Sbjct: 207 YTLKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCLD 266 Query: 222 ---------------DQAIASGDGQVSTQAVSAML----------GTLDDDQALSLVEAM 256 +Q ++ V+ + ++ + G D + +++ Sbjct: 267 SSVTTHENKQDDQHGEQGVSGDIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSV 326 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMA 307 ++ + + G + + +L + + + + Sbjct: 327 RGSSPDAALYWYARILTAGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFHRVGP 386 Query: 308 AIELRMRELA 317 + R A Sbjct: 387 SEGERAIAQA 396 >UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliivibrio RepID=B5FG33_VIBFM Length = 327 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 120/328 (36%), Gaps = 34/328 (10%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 R+ HA L + G G+ ++ + A L C T PCG C +C I+ DL I Sbjct: 22 NDRLPHAILCAMPIGAGREALVQYFADTLLCLT-QGIEPCGFCHSCELIKSQTHPDLHWI 80 Query: 94 DAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 VE R + +V +ID ++ + NALLKTLE PP++ Sbjct: 81 KPETEGKSISVEQIRQCNSWALESSQFNAKRVIIIDPAEKMTESAANALLKTLEAPPKNC 140 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 +F+L P +L TI SRC +H +D E I L+ E+++ +++ Sbjct: 141 QFVLLADSPHQLLPTIRSRCQVWHQSKIDAESITIWLK---ETENLSVSMQSIA------ 191 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 L D+L L ++ Q L E+ V+++ + ++ Sbjct: 192 ---LNDSLPLAVKSFYQDKKQ-----------ALHKQLLSDF-ESCVKSDFCQTADIVKT 236 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 E L +L I + + LA+T+ + Y Sbjct: 237 VLKLESEGLTWLSYLLA---DI-QKRQMGIMQPWVHCDEIKLIESLAKTLSSNVVYKQYI 292 Query: 331 TLLIGRKELPY--APDRRMGVEMTLLRA 356 L +++L ++ + + + Sbjct: 293 ALNSLQEQLDSFPGLNKELLLTQWMFEF 320 >UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVJ6_9GAMM Length = 343 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 118/341 (34%), Gaps = 38/341 (11%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 GR+ HA L G GVGK AR LA+GL C+ CG C +C G+ D E Sbjct: 28 EQGRLPHALLLQGAAGVGKGLFARQLARGLLCQNAAGVAACGQCQDCHLSAIGQHPDWHE 87 Query: 93 IDA--------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 + + +V+ R L D++ KV +I H ++ ++ N++LKTLE Sbjct: 88 VTFERTKEGKLSREIRVDQIRALSDSLSLKSHSAGGKVAVIYPAHKMNVNAANSVLKTLE 147 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP LL T P +L TI SRC +Q L ++ ++ P+AL Sbjct: 148 EPSADTFLLLVTDAPSRLLPTIRSRCQSIRFDVPSADQAEQWLASVVADQ----SPQAL- 202 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 + G+ A ++ Q + G L+ Sbjct: 203 --LAMSGGAPLLARQAAEEGWLDERETWFEQLLDIARGKLNP------------------ 242 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI---P 321 + AA + +L + + + + + LA Sbjct: 243 VDAAAAAAGMEVAASRVLEWTVSFCSDLIRLVQKVPDSVQ-NKDHQSTLAALAEHRFANS 301 Query: 322 PTDIQLYYQTLLI-GRKELPYAPDRRMGVEMTLLRALAFHP 361 P + + LL GR + + + E LL+ Sbjct: 302 PQPLYRWCDDLLKAGRYAESASLNAQQLFEDVLLQWQDIQH 342 >UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggregatibacter aphrophilus NJ8700 RepID=C6APV7_AGGAN Length = 356 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 114/319 (35%), Gaps = 8/319 (2%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 97 HHA L G+G + LA+ L C T CG C +C ++ D I Sbjct: 25 HHALLLRADVGLGVAQLCEALAQRLMCLTPNGDEACGQCHSCHLMQANSHPDFQHIAPIE 84 Query: 98 R--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 ++ R + + + KV I++ H L+ + NA+LKTLEEP + F+L Sbjct: 85 NKDIGIDQIRAMNEQATQHAQQNGNKVIYIEQAHRLTEAAANAILKTLEEPRPNTYFILH 144 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 L TI SRC ++L + E L+ ++ E + + +G++ Sbjct: 145 CDIQTALLPTIYSRCQVWNLLPPETEVALQWLQSQVSAETLEMLFASSPTRLLTPDGAIG 204 Query: 216 DA--LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 DA + D A AML +Q + R + A Sbjct: 205 DANVQNPLDFVTALRVNYGRPLLALAMLQQNQLEQRREFLRQFWVFYRRRSPLELFPFFA 264 Query: 274 RGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + + L +L L +L G IE + + A+ + + + Sbjct: 265 KEKDMALQQLDWLLAFLSDALKAKL-QVKNGWICQDIERGVIQFAQGLSAPALLQAGNIV 323 Query: 333 LIGRKELPY--APDRRMGV 349 R +L A ++ + + Sbjct: 324 QKVRSDLQTINAVNQELIL 342 >UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI000197631E Length = 394 Score = 149 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 68/394 (17%), Positives = 130/394 (32%), Gaps = 56/394 (14%) Query: 15 FADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ V+ L +S + ++L G G G++++AR A L E+ Sbjct: 4 WDSIVGQQAVVGQLQAIVSGDPKALAQSWLICGPPGSGRSNVARAFAAAL--ESPDRGLS 61 Query: 73 CGVCDNCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 + R++ G D+ ++D R L+ + P+ +++ +I++V + Sbjct: 62 DEPTNITRQVLSGTHPDVTTLATNKVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDRM 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH-- 189 + N LLK +EEP H +LL Q + TI SR +L + + L Sbjct: 122 LERTTNVLLKEIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTKAVADYLMASV 181 Query: 190 --ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 L E + AR AEG + A D + + +LG Sbjct: 182 NPALPAER-QFDRHVAVRAARLAEGHIGIAKLYASDTQVMSDRD---ELIVGLLGLRKAS 237 Query: 248 QALSLVEAMV-----------EANGERVMALINEAAARGIEWE----------------- 279 A+ L + ++ A G + Sbjct: 238 DAVLLADDLIDTAKSQAEADVNRQTAAAEADFRRINGLGEQDRIPPKLRGAYNAIAKKDE 297 Query: 280 --------------ALLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRELARTIPPTD 324 L + IA++Q + A+G + EL+ + + Sbjct: 298 IKRRATRRSRDVLDRALNSAASIYRDIAVLQNNAEDAVGLINMENRTAIAELSARLSRQE 357 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + RK L + + E + Sbjct: 358 VVDRLEAITVARKRLLGNGNPMLVFEALFCALIP 391 >UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteurellaceae RepID=B8F7F9_HAEPS Length = 329 Score = 149 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 112/339 (33%), Gaps = 28/339 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + + + GR HHA LF G+G + R A L C T PCG C +C Sbjct: 7 HKQTHHQITSTFQQGRGHHALLFKTDSGLGTEQLIRHFAHWLLCHTPQQNQPCGQCKSCL 66 Query: 81 EIEQGRFVDLIE--IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + G D ++ R++ +Q +G V + L+ + NA Sbjct: 67 LWQSGNHPDFHLLAPIDDKDIGIDQVREITAKLQQFAQQGGNAVVYLAGAERLTEAAANA 126 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEP ++V FLL + TI SRC + + + Q L+ + Sbjct: 127 LLKTLEEPNQNVYFLLEAPLQATMLATIQSRCQTWLVHTPESSQTFEWLQTECPTAQSSE 186 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 AL+L + + + L + Sbjct: 187 IETALRLCH---------------------NRPLLCKTFLETDRLPSRKTFLQTFWRFYK 225 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + V L + + + L + ++ A ++ + ++ Sbjct: 226 SR--DVFLLFSAFDKEPEQVQQQLEWLGSFFSDALKAKMQIATGWL-NPDLQNGILPFSQ 282 Query: 319 TIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLR 355 + + +Q + +++L A ++ + + L + Sbjct: 283 QLTAQGLLKGHQIIQQTQRDLREVNAVNQELMLLDCLSK 321 >UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepID=B6IMK3_RHOCS Length = 372 Score = 149 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 118/332 (35%), Gaps = 46/332 (13%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ +VG E L + GR+HHA+L G G+GK ++A +A+ + + Sbjct: 14 PRRNPHLVGHEQAERLLLESWTSGRMHHAWLIGGPPGIGKATLAFRMARFVLKQGTGGND 73 Query: 72 P--------------CGVCDNCREIEQGRFVDL----IEIDAASRT-----KVEDTRDLL 108 R I G DL D + V++ R + Sbjct: 74 AALFGAPPPPVTLAVDTEHPVARRIAAGGHADLLTVQRTWDEKRKRFKRDLPVDEVRRIA 133 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 ++ A G ++V ++D ++ NALLK LEEPP L+A + L TI S Sbjct: 134 PFLRLTSAEGGWRVVVVDGADQMNLSGQNALLKILEEPPARSLILMAADNVGSLLPTIRS 193 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 R + L+ L + L E + A LAR AEGS+ AL L Sbjct: 194 RSRKLMLEPLPEATVVGLLGRYAPE----LDREAQTALARLAEGSIGRALDLHHAGG--- 246 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE--WEALLVEML 286 MLG L+E + + I++ + W A+ ++ Sbjct: 247 -----LDLYRQMLG---------LLETLPRLDVLAAYGFIDKVLRGNDDAAWSAVTDLLV 292 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 L R+A G +A + L Sbjct: 293 WWLGRLARTTARGQLPGEVVAGEGPLIARLVE 324 >UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=Vibrionaceae RepID=D0IB97_VIBHO Length = 322 Score = 149 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 124/326 (38%), Gaps = 33/326 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + + + L R+HHA L S G GK +A +LAK + C+ G+T PCG+C +C+ Sbjct: 9 HQEIWQSWQQLLGQDRLHHAILLSAPTGSGKIELAAMLAKTILCKNGVT-EPCGICHSCQ 67 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + D + + V+ R G +V LI + + N Sbjct: 68 LFDADTHPDFHWLKPEAEGKQLGVDAIRAGNQYAWETSQLGGQRVILIQNADRMGEAAAN 127 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP H F+L + + T++SRC ++ K + ++ + E Sbjct: 128 ALLKTLEEPPSHCHFILLSQSMDTMLPTVVSRCNKWKPKLPEESVVKRWV------EGEL 181 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 E LQ+L R G+ A + + + V S + + Sbjct: 182 FESVPLQVL-RINRGAPLAAKAFVENGSVARHKAVVDGFASFV---------------IQ 225 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + V + +A G++W + L +L ++ + ++ LA Sbjct: 226 KQGLFTVTEQVVKAQQEGLQWLSFL--LLDVVK-----IQQGSDEAIVHCDEMKTLQTLA 278 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAP 343 ++P + + L + EL Sbjct: 279 SSLPHSQVMAQLMGLNRMKAELARHT 304 >UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus fumigatus RepID=B0Y2N9_ASPFC Length = 389 Score = 149 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 124/370 (33%), Gaps = 67/370 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VVGQ+ L+ L + + + H LF G G GKTS LA+ L Sbjct: 19 LPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPH-LLFHGPPGTGKTSTILALARQLY 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR----- 117 + + ++E++A+ V D + + P Sbjct: 78 GDADM------------------SQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLR 119 Query: 118 ----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FK+ ++DE + + AL + +E+ +F + T + KL ++SRC + Sbjct: 120 ESPYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARL 179 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG----- 228 L IR L + E+I P AL+ L+ + G +R AL++ + + Sbjct: 180 RFPPLRPSAIRTLLLQVATTENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWSD 239 Query: 229 ------------------------------DGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 G ++ + + T ++E Sbjct: 240 DEPTTTISRIKFLMMASETSQQASTSNLPAQGVITVETIQEYTHTPLSSDISVIIEGAKG 299 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 N R + IN+ E +L ++L + PA + + Sbjct: 300 DNYNRCIISINQI---KSETGLILADLLTAISARLQHAQVPAPVKITWLDALSEIEANLA 356 Query: 319 TIPPTDIQLY 328 +IQ Sbjct: 357 CGGSEEIQSA 366 >UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleosporineae RepID=RFC2_PHANO Length = 411 Score = 149 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 61/349 (17%), Positives = 120/349 (34%), Gaps = 82/349 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+T ++V Q++ + L+ L + H LF G G GKTS LAK L Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQLY 91 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----APARG 118 + + ++E++A+ + R + + AP Sbjct: 92 GPELMKSR------------------VLELNASDERGISIVRQKVKDFARQQLSVAPTYN 133 Query: 119 -----------------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 FK+ ++DE +++ + +AL +T+E +F L Sbjct: 134 VMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLV 193 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 ++ + SRC +F K+LD +++ I E + + + L R A+G LR Sbjct: 194 CNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLR 253 Query: 216 DALSLTDQAI-----------------------------ASGDGQVSTQAVSAMLGTLDD 246 A++ A A +S + ++ + G + Sbjct: 254 KAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPA 313 Query: 247 DQALSLVEAMVEA------NGERVMALINEAAARGIEWEALLVEMLGLL 289 S +A+ + ++ A G + ++ + Sbjct: 314 PTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQV 362 >UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-terminal region n=2 Tax=Bacteria RepID=Q4V1E4_BACCZ Length = 130 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ K Sbjct: 3 NYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGLRGTGKTTVAKIIGKD 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T PC C NC +I +F D++E DAAS VE+ R + D V AP G++ Sbjct: 63 VNCLTPLNNGEPCQKCANCSDINNNKFADILEFDAASNNVVEEIRQIRDQVHLAPVTGKY 122 Query: 121 KVYLI 125 KV + Sbjct: 123 KVCTL 127 >UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL87_9FIRM Length = 342 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 120/357 (33%), Gaps = 25/357 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 Q V GQE + L + R+ H +F G G+GKT+ A A L + Sbjct: 3 QFLTHVYGQEKLKRELKLLMENHRLPHTMIFYGDDGLGKTTAAFDFADFLTGASEKIWVE 62 Query: 73 CGVCDNCR----EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 + + K++ R ++ A + +V +ID+ Sbjct: 63 IKKIKSSKNEKLLENLKGDRVWYIRPMGMELKIDQFRAFMEE--MASFDEKLRVCIIDDA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 +++++ N+ LKTLEEP E++ F+L T+D L TI+SR +F L + + +E Sbjct: 121 QKMNQYAANSFLKTLEEPVENLYFILVTSDINALLPTIVSRGERFPFFPLMENEFYYLVE 180 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + E + + + +EG+ A L + G + D Sbjct: 181 TVAEEFNFDGTVGK-ETAFKVSEGNPGVAKDLCGEK-----------------GMMQLDV 222 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 A+ E + ++ R ++ LL ++ + + + + Sbjct: 223 AMRFWETVTTSSTAFSSLSAWTFKER-EDFLVLLRWVIIIGRDLMIGAETTDDQLEKCMQ 281 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 R + L + L + +M L++ + Sbjct: 282 WSDREKRLLKYWTDGRAIEALAVLQKAESACRRYISTKNIWDMILIQLQHIQKGDYI 338 >UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria RepID=B0CAJ0_ACAM1 Length = 742 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 100/662 (15%), Positives = 202/662 (30%), Gaps = 81/662 (12%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + VGQ+ ++ L + ++ + +F G G GKT++A Sbjct: 17 PLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLS-SLIFYGPPGTGKTTLA------ 69 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 +I A ++D R +D Q G+ Sbjct: 70 -------------------QIIANTTQAHFLALNAVLAGIKDIRSSVDEAQDRRGQYGQR 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 + +DEVH ++ +ALL +E V + ATT+ ++ ++SR F L++L Sbjct: 111 TILFVDEVHRFNKAQQDALLPWVEN--GTVILIGATTENPYFEVNKALVSRSRIFQLRSL 168 Query: 179 DVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + +R LE L ++ I E A + L A G R L+ + AI + + Sbjct: 169 MPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPD 228 Query: 232 ------VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 ++ A + G D + +++M ++ + + + G Sbjct: 229 DQGVIPITLAVAEASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAG 288 Query: 276 IEWEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 + + M+ L + + + A R+ P LY T Sbjct: 289 EDPRFIFRRMIILASEDVGLADPQAVGVVMACAQAFDRIGLPEGQYPLAQAALYLSTA-- 346 Query: 335 GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 P + + +P P + R A P Sbjct: 347 -----PKSNSALAYFDALASVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHWV 401 Query: 395 SAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVT 454 + ++ + + Q A + + + + + + + Sbjct: 402 AQQYLPDSLQGQVFYQPSDQGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRE 461 Query: 455 DRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 +Q + A + + + EV + L Sbjct: 462 RWLQRTMSQTGDHAAWVRDRIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHV 521 Query: 515 AEAIERDPWAAQVSQLSLPKLVEQVALNAWKEES---DNAVCLHLR--------SSQRHL 563 + AQV LS + VA ++ ++ D+ L ++Q H Sbjct: 522 SSDKVAQTLEAQVKALSALQRPICVAGSSSDLKTLIYDHTPDLQFDWILGRNTFANQMHQ 581 Query: 564 NNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP-----LEWRQAIYEEKLAQARESI 618 +R A + LA+ L L ++ + E + E ++ A ++ Sbjct: 582 LDRPAAENLAQQLISLLRPEGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAAL 641 Query: 619 IA 620 Sbjct: 642 YQ 643 >UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FDAF Length = 385 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 136/384 (35%), Gaps = 51/384 (13%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++VGQ+ V+T L + L G + HA+LF+G G G+++ AR A L Sbjct: 4 FNELVGQDDVITQLKHALYSPGAMTHAWLFTGPPGSGRSNAARAFAAALISGGEEQGD-- 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 + +G L + +++ R+L+ Q AP ++V +I++ +S Sbjct: 62 ----VTARVLKGHHESLTIMSTQKSVIAIDEVRELVTRAQSAPVNSPWRVVIIEDADRMS 117 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + N LLK +EEPP +LL P + TI SRC L+ + + L Sbjct: 118 ERTANVLLKAIEEPPPATVWLLCAPSPIDVLTTIRSRCRPVRLRIPSRDAVAQLLI---- 173 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSL-TDQAIASGDGQVST----------------- 234 E +P + A A+ + A + +++ Q+ Sbjct: 174 -ERDHVDPDRAKWAAAVAQNHIGRAKYMALNESADEERRQILAIPGKLTSVGATIRLAGR 232 Query: 235 ------QAVSAMLGTLDDDQALSLVEAM----VEANGERVMALINEAAA---------RG 275 + + + + + L+ + ++ + I + R Sbjct: 233 IVDEAAETAKSRVEERNASERSDLMATLGIESEKSIPPSARSQIRKLEEEQKRRSVRARN 292 Query: 276 IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 E + + +E++ L I M QL G A + E A P L + Sbjct: 293 DELDRIFLELMSLYRDILMYQL-GIREGWINAGEVDLISEQANRDGPDTTLLRIDAITEA 351 Query: 336 RKELPYAPDRRMGVEMTLLRALAF 359 R+ L + VE + Sbjct: 352 RRRLQTNMSPVLIVESAFVLLSNP 375 >UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VXK9_MARMS Length = 312 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 38/333 (11%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L + HA L +G GVG+ +A + K L CE A CG C +C+ + Sbjct: 15 VQVLKQ---TNSLSHALLITGADGVGQEELAHEMVKNLMCEKNQAA-ACGTCHSCQLMSA 70 Query: 85 GRFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D +D AS KV+ R L+ + P G+ KV LI ++ ++ NA+LK L Sbjct: 71 DTHPDFRVLDGEASTIKVDQVRLLVRQISQKPQVGQNKVVLITHAQAMNINAANAVLKAL 130 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEP + F+L ++ L TI SRCL ++ + +++ L + + + AL Sbjct: 131 EEPADRTFFVLTSSQSSSLMPTIRSRCLLVNVPTPSMNEVKSWLMQQPDGKAL----GAL 186 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 L L++ Q + Q S + GT+ ++++ + N E Sbjct: 187 FWLTTQ----PFRLLAIQQQGKTQLYAGLPDQLTSMLRGTVS---VSAVLKGLDSNNIE- 238 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 + +LH+ + + A + + I + + Sbjct: 239 ----------------DYCNGLAAILHQ-CICHSTGAPIDEALQTIYDTLIA---RLGIQ 278 Query: 324 DIQLYYQTLLIGRKEL-PYAPDRRMGVEMTLLR 355 + L YQ+L + +L + M + L Sbjct: 279 TLMLRYQSLQKLKSDLQKTNLNPIMQLTHELNH 311 >UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B0Z4_9ENTR Length = 328 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 34/338 (10%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 L + GR HHA L G+G +++ L++ L C+ C C +CR Sbjct: 8 NQAYRQLISIYQEGRGHHALLLHAIEGMGGEALSYGLSRWLMCQNRQGLKSCNECHSCRL 67 Query: 82 IEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + D + + S +E R + + +++ + F+V I +V L+ + NA Sbjct: 68 MLAETHPDWHILQSEKGKSSIGIEAVRKVTEKLEHHAQQSGFRVVWIKDVEALTEAAANA 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP+ FLL P+ L T+ SRC +HL +++ H L+ L A+ Sbjct: 128 LLKTLEEPPKDTYFLLNCQHPEVLLATLRSRCFYYHLATPNLQHATHWLQQQLPNIPYAN 187 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 AL ++ + ALSL + ++ Q +L ++ + Sbjct: 188 SVTALN----LSQNAPVLALSLLKDEW--KEREIFCQ---------------ALYTSIQQ 226 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + +N+ A + L + + L + A + + + L++ Sbjct: 227 HDLYSFLPQLNQDNAERRLYWLLSLLLDAL------KYQTNAQVYCVNQDQQALIMALSQ 280 Query: 319 TIPPTDIQLYYQTLLIGRKELPY--APDRRMGV-EMTL 353 + R +L A +R + + E L Sbjct: 281 -WSSDILLSTIDGWKQCRYQLMTIPALNRELLLVEQLL 317 >UniRef50_UPI000192574D PREDICTED: similar to Werner helicase interacting protein 1 n=1 Tax=Hydra magnipapillata RepID=UPI000192574D Length = 527 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 107/316 (33%), Gaps = 53/316 (16%) Query: 4 QVLARKWRPQTFADVVGQEH--VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP F + GQ L +I + + G G GKTS A ++++ Sbjct: 109 IPLAEQMRPNNFDNFYGQNSFGAKNLLKELFVSNKIP-SLILWGPPGCGKTSFAHIISRR 167 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 C D+ D KV R Sbjct: 168 -----------CKESDSKYRFVTLSATMAGINDVKDEIKVAK--------NEKKLTSRKT 208 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 V IDE+H ++ + L +E+ + + ATT+ + ++SRC +L+ Sbjct: 209 VLFIDEIHRFNKMQQDTFLPYVED--GTIVLIGATTENPSFYINNALISRCHVVVFNSLE 266 Query: 180 VEQIRHQLEHILNEEH--------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG- 230 E I L++ + + E AL L+A+ A G R AL+ D + + Sbjct: 267 TEVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAKKES 326 Query: 231 --------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAA 272 Q+S + + L G + +L +++ ++ + + + Sbjct: 327 IHVSQANSQISCELIREELQRCCVNYDKAGDEHYNLISALHKSIRGSDVDASIYWLARML 386 Query: 273 ARGIEWEALLVEMLGL 288 G + + ++ + Sbjct: 387 EGGEKPLYIARRLIRI 402 >UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MJX8_9FIRM Length = 318 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 110/304 (36%), Gaps = 26/304 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G++ LA R+ H + +G +G+GK + A+ A C PCG C Sbjct: 13 LFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRCR 72 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +CR I G D+I +K E RD + P +V++ ++ ++ N Sbjct: 73 SCRNIISGEHADVIYAKGEKYSK-ESVRDNVCFASTLPNDSDTRVFIYEDCEEMTEEQQN 131 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK +EEP ++ +++ ++ ++ TI SR + + + E+ L E+ Sbjct: 132 VLLKAIEEPSKYNRYIFTCSNTSQILETIKSRLVCIPISDMTAEECVSCL------EYNG 185 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ + + + + ++ D A + EA+ Sbjct: 186 YDSDTAKRAVELYGTNPGRIRDILSD-----EKRIKL-----------YDTAKKVTEALS 229 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + A+ A + ++ + + V + + + R+ L Sbjct: 230 KKDEYSA-AVAMTACTTREDLYGVITILYENVTESLRVLETGGEPLLCLT--KARLYALY 286 Query: 318 RTIP 321 + Sbjct: 287 EVLS 290 >UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosaccharomyces pombe RepID=WRIP1_SCHPO Length = 504 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 46/306 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP++ + VGQE ++ + N + R ++ + G+ G GKT++ARL Sbjct: 84 RPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRC-NSMILWGSAGTGKTTLARL--- 139 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 I IEI A S T + + D+ Y GR Sbjct: 140 ---------------------IAVTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRK 178 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DEVH +R + L +E+ + +L ++SRC F LK L Sbjct: 179 TIIFLDEVHRFNRAQQDIFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTR 238 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 + ++ L H E E + ++ +G R AL+ + +I G + Sbjct: 239 DNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDARMALNALEMSIGMLRQGPL 298 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S + + L G + D + +++ ++ + + + G + + Sbjct: 299 SLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGEDPLYVA 358 Query: 283 VEMLGL 288 M+ + Sbjct: 359 RRMVRI 364 >UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/replication n=9 Tax=Fusobacterium RepID=Q8RGJ6_FUSNN Length = 407 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 123/324 (37%), Gaps = 41/324 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA K RP++ D VGQE +L + + + ++ +F G G GK+S+ +++ Sbjct: 12 EPLAYKLRPKSLDDFVGQEKLLGKDGVITRLILNSTLSNS-IFYGPPGCGKSSLGEIISN 70 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGR 119 L+C E A+ V D R++++ + + Sbjct: 71 TLDCN-------------------------FEKLNATTASVSDIRNVVETARRNIELYNK 105 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DE+H +++ +ALL E+ + + +LSR + F KAL Sbjct: 106 RTILFLDEIHRFNKNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRVMVFEFKALT 165 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E I ++ LN +I + +++ ++G R AL+ + + Q+S + + Sbjct: 166 NEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIALNYVE-MYNNIHSQMSEDEIFS 224 Query: 240 MLGTLD---------DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM-LGLL 289 + D + ++++ ++ + + + G + + + + + Sbjct: 225 IFKERQVSFDKKQDKYDMISAFIKSIRGSDPDAAVYWLARLLDGGEDPKYMARRLFIEAS 284 Query: 290 HRIAMVQLSPAALGNDMAAIELRM 313 I M + N ++ Sbjct: 285 EDIGMANPEALLVANAAMNACEKI 308 >UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrogenothermaceae RepID=B2V7X1_SULSY Length = 312 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 24/283 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G E T + L + L+ G +GK +A A+G CE CGVC+ Sbjct: 3 VIGHEKEKTLIKKYLHKNYDSLSLLYEGKDCIGKKLLALYTARGFLCEKKE-GFGCGVCN 61 Query: 78 NCREIEQGR-----------FVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 +C+ + +++ K++ R+ + + ++G KV +I Sbjct: 62 DCKLVNNLISNVYENTNLTPHPNIMLIQSDNREIKIDQIREAISFLSLKSSKG--KVLII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ L+ S NALLKTLEEPP + +L T++ +L TI+SR + + L + + Sbjct: 120 EKAENLNTESANALLKTLEEPPSNTLIILTTSNQNQLLPTIVSRLKKIRFRKLSHQDVVD 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L L++E ++ LA ++GSL A +L + + V ++ Sbjct: 180 ILSLKLSDEK------KIKELADISDGSLCIASTLLKKEEIYVWAK---DFVGILINKKH 230 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + S+ + + + E V + I+ L ++ Sbjct: 231 PEGIFSIAAKIDKMDIEDVNLFFDIIFKFYIKHSKDLKDIDSY 273 >UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RG91_METVM Length = 544 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 114/286 (39%), Gaps = 24/286 (8%) Query: 51 KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLD 109 T+ A LA+ L E + +E++A+ ++ R + D Sbjct: 277 NTTAALCLARDLFGENWRD-------------------NFLELNASDERGIDVIRTKVKD 317 Query: 110 NVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 + P FK+ +DE L+ + NAL +T+E+ + +F+L+ P K+ I S Sbjct: 318 FARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQS 377 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC F L E I +L+ I +E + L + +EG +R A+++ A A Sbjct: 378 RCAIFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQTAAALS 437 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLG 287 D + + V + ++ ++E + L+ + G+ E +L +M Sbjct: 438 D-VIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDILNQMFR 496 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQTL 332 ++ + + + L + + + R+ E A I + + + Sbjct: 497 EINNLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALM 542 Score = 79.3 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 + K+RP+T D+VGQ+ ++ L + + H LFSG GVGK Sbjct: 3 KPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPH-LLFSGPPGVGK 49 >UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR77_9PROT Length = 348 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 69/365 (18%), Positives = 121/365 (33%), Gaps = 49/365 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 + V L ++ HA L +G RG+GK +AR A+ L CE + CG C C Sbjct: 7 HDQVWQQLR--ARRAQLPHALLITGQRGIGKFDLARRFAESLLCENVTPAGSACGSCLAC 64 Query: 80 REIEQGRFVDLIEIDA-----------------------ASRTKVEDTRDLLDNVQYAPA 116 + QG DL + + + ++ R L + Sbjct: 65 GWLAQGNHPDLRLLQPDALAENESSEAVEGEGGGGRKKASQQITIDQVRGLDAFLHLGTH 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R +V L+ ++R + NALLK+LEEP + F+L ++P +L TI SRC ++ Sbjct: 125 RHGVRVVLLSPAEAMNRATANALLKSLEEPIANTLFILVASEPHRLLPTIRSRCQSVPVR 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L A+ A GS A+ L Sbjct: 185 RPSRHLAVQWLGQAGVN-------DAIDDWLALAGGSPLLAVELAGSG--------ERAL 229 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + A+L + + + A + + +A R + L L + + Sbjct: 230 LDALLAQVARTEGFDPLAA------AANLDKLVKADKRPAPLKRTLDWAQKWLFDLTLAS 283 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ LAR + + + L + + + R+ +E L Sbjct: 284 AGLSPR--YFLPQASLLQRLARATDTGKLLAFNRKALQYKAQCEQPLNSRLFLEDFFLNY 341 Query: 357 LAFHP 361 Sbjct: 342 AGLFR 346 >UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=Rhizobium/Agrobacterium group RepID=B9JWB1_AGRVS Length = 346 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 43/322 (13%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----- 70 + G LA+ G++HHA L G G+GK ++A A + + Sbjct: 23 DRMFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSHPDPASAPFVI 82 Query: 71 -TPCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRF 120 P R+I G +L+ I S VE+ R G + Sbjct: 83 ADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEIRKAGHFFSQTSGGGNW 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ ++D ++R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L+ L V Sbjct: 143 RIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSRCMPLKLQTLGV 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST--QAVS 238 + + L H+ ++ + L+ ++GS+ AL L I G ++ A+ Sbjct: 203 DDLASALAHL----GVSPPVEQMAALSDLSKGSVSQALKL----INYGGMEIIAAFNAIL 254 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 A G Q L +A+ + + + + + L A Sbjct: 255 ASEGPAARKQMHKLADALSAKDSDVIYHF-------------FIEHLSEFLMDNARQVAM 301 Query: 299 PAALGNDMAAIELRMRELARTI 320 L R+ L+ I Sbjct: 302 AGDLA-----RAERLSRLSSAI 318 >UniRef50_Q46AT6 Replication factor C large subunit n=4 Tax=Methanosarcinaceae RepID=RFCL_METBF Length = 642 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 106/288 (36%), Gaps = 36/288 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL------GRIHHAYLFSGTRGVGKTSIARLLA 59 A K+RPQT ++VG + + L R A + G GVGKTS A LA Sbjct: 7 WAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDR--RAVVLHGPAGVGKTSTAHALA 64 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARG 118 + L+ E +IE++A+ + R G Sbjct: 65 RDLDWE------------------------VIELNASDQRTAGVIERVAGSAASMNTFFG 100 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQKLPVTILSRCLQFHLK 176 ++ ++DE + + ++ + ++ +L D L TI + CL+ Sbjct: 101 GKRLIILDEADNIHGTADRGGMRAIAGIIKNTLQPIVLIANDIYGLTPTIRNLCLEIKFG 160 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ + L+ + E I P A+Q +A A G LR A++ QA A+G + + Sbjct: 161 SVQSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAINDL-QAAATGRKTLEVED 219 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 +S + ++ ++ + ++ + + + E Sbjct: 220 LSTSGRDVKENIFKAMQRIFKSTDCKKALEAARGLDESPEDLVHWIDE 267 >UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothia mucilaginosa RepID=D2NPK2_9MICC Length = 380 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 127/373 (34%), Gaps = 46/373 (12%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIE 83 L L + R HA+LF+G G A++ A L CE CG C C + Sbjct: 14 LQQLRTDAAADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDPQNRGCGQCKGCVTVM 73 Query: 84 QGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D A+ +++ R+L+ Q P GR++V L+++ + + N LLK Sbjct: 74 NGSHADFTHFSTEATHISIDEARELVMKAQDRPTVGRWRVILVEDTERMPERTSNVLLKA 133 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPP H +LL P + VTI SRC L Q+ L Sbjct: 134 IEEPPPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPTDAQVHEYLLA------HGVVDPL 187 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVS------------------------TQAVS 238 AR A G ++ L A ++ Q Sbjct: 188 AHRAARLALGDAQEGYRLATDERAMARRELITSLILNVRSISSAFNAAEKLTDLADQDAQ 247 Query: 239 AMLGTLDDDQALSLVEAMVEANGERV----------MALINEAAARGIEWEALLVEMLGL 288 A+ D+ + L+ + GERV + + A+ + + LL + + Sbjct: 248 AVSALKDEQERQELLALLGIREGERVSPSLRAQVRRLEEQQKRRAKRVSSDTLLRSVAQV 307 Query: 289 ---LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L V LS A + + + Q + + + L + Sbjct: 308 QTVLRDALTVALSAQAPL-VNEHLREPLEAFCTRRSAQQLLEDVQAVELTLRRLRTNANA 366 Query: 346 RMGVEMTLLRALA 358 R+ +E + R + Sbjct: 367 RLALEALMSRFVY 379 >UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NYC4_9DELT Length = 387 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 91/403 (22%), Positives = 141/403 (34%), Gaps = 84/403 (20%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI------ 68 F+ + Q+ L+ L+ G++ HAYLF G GVGK A LA LNC+ Sbjct: 5 FSQLREQDPAKEMLSRALNSGKLAHAYLFRGPAGVGKKRAAYALAATLNCQQPPPTDSRQ 64 Query: 69 -----------------------------------------------TATPCGVCDNCRE 81 CG C CR+ Sbjct: 65 VTNQGDHEVSDHGVPHLAASETAMRTSVREPARSPQDAVPRDRLPRQGLEACGRCPACRK 124 Query: 82 IEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G DL+ + K+ R++ +++ P G ++V L+ EV + R + N+LL Sbjct: 125 FAAGSHPDLLTVSPEGAAIKIGQVREIKKALRFPPLEGSYRVVLVKEVQTMRREAANSLL 184 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEPP +L + + TILSRC AL + L E P Sbjct: 185 KILEEPPPATILILTGDEAGAILPTILSRCQVIPFYALSTATVATML----GAEGETLPP 240 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 A LA AEGSL A L + + ++ L+L+E + + Sbjct: 241 AAAATLAALAEGSLGRARLLRQKELLPLRREI----------------LLALLE--QQPD 282 Query: 261 GERVMALINEAAAR----GIEWEALLVEMLGLLHRIAMVQLSP----AALGNDMAAIELR 312 + +I E A R E LL + G H +A++ + +E Sbjct: 283 APAAVEIILELAERCAALKDELPELLELLTGCFHDLAVLASAGRPTEQRRPLLNHDLEPE 342 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A + + Q L R+EL +R + E+ Sbjct: 343 LINAAGRWDFSQLVRRLQRLRRARRELARNCNRGLVCEVLFFD 385 >UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E131_METI4 Length = 454 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 119/354 (33%), Gaps = 55/354 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 L+ K RP+T ++VGQE +L L + RI + + G G GKT++A ++AK Sbjct: 21 PLSTKMRPRTLEELVGQEDILLPGKPLRRLIDADRI-QSLILYGPPGTGKTTLAEIIAKK 79 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-RGRF 120 A V D R ++ + Sbjct: 80 TKS-------------------------FFARLNAVEAGVSDIRKVIGQAALRWKKEKKH 114 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ + LL LE + L +LSR F K L Sbjct: 115 TLLFIDEIHRFNKSQQDVLLPDLETGIIKLIGATTHNPCFYLTAPLLSRSHLFEFKPLSK 174 Query: 181 EQIRHQLEHIL-NEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-- 231 + + L L ++E ++ E A + L EG R L+ + A+ S + Sbjct: 175 QSLETLLLRALTDKERGLGNYEVSIEKEAKEFLLNLCEGDARRLLNYLEIAVLSSLQENQ 234 Query: 232 -----VSTQAVSAMLG----------TLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 ++ + + ++ D + ++++ ++ + + + + + G Sbjct: 235 PAPVILNIETIQNLVQKKIPRYDHGEDEHYDTISAFIKSIRGSDPDSALYWLAKMISAGE 294 Query: 277 EWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 + + ++ L I + + ++ IP LY Sbjct: 295 DPRFIARRLVILATEDIGLANPQGLPIATAAFEAIEKIGMPEGRIPLAFATLYL 348 >UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales RepID=A3CUW4_METMJ Length = 336 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 16/294 (5%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 + +RP+ D++GQ+ V+ L G + H L SG G GKT+ LAK L Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPH-MLISGPHGTGKTAAVECLAKRLY-- 59 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-------VQYAPARG 118 G + ++ L + S +D +++ P Sbjct: 60 -GENWKANTTVFSATDLLGRGRSALETDERFSMIYRKDRSLIVNFKQIVKWYASMRPLDA 118 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ + ++ H L+ + AL +T+E +F+ T P + I SRCL + Sbjct: 119 DFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRCLPLFFAPV 178 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + +LE IL E A + L+ AA+G LR A+ A + ++ Sbjct: 179 ESSLVLTRLEEILAAEGAAVPADDIDLIVYAAQGDLRRAIMYLQIAARAEQEF----DLA 234 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHR 291 + + + A S A+ + N + + G+ ++ E+ + R Sbjct: 235 EISRSETTNVATSAFVALRDGNFDAARRIAESLMIEYGLSAREVVGELRQVARR 288 >UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJA2_9FIRM Length = 294 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 122/344 (35%), Gaps = 66/344 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +V G E + L + RI HAYLF G +A + A L CE T P Sbjct: 1 MKWDEVSGSEKITRVLQAAVQADRIAHAYLFCGADEAAIKKLAAVFAASLLCE---TKEP 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C++ DL +D ++ K+E R L P R++V+++ + L Sbjct: 58 CGICAHCKKAANRSHPDLHWVDPEGKSLKIEQVRSLKRKAYLLPHEARYQVFILTDAGQL 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP F+L +P L T++SRC F L+ + I Sbjct: 118 TTEGANSLLKVLEEPPPASVFILLAKNPAMLLPTVVSRCQVFSLQGGGEQSIPAL----- 172 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 A+ L + +G Sbjct: 173 ----------------------NHQAVELLEVLKNNGG-------------------IND 191 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L++ + A E +L L + ++Q + E Sbjct: 192 LLDRL----------------AENEELTDFCDTLLLTLRDLLILQTTGQQSLLTQGRDEG 235 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ P DI+ LL +K+L + R+ +E L R Sbjct: 236 LLQPFLSVWPAEDIREALAVLLKLQKDLQSPVNVRLALEGALRR 279 >UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9B3_9FIRM Length = 314 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 39/321 (12%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L+ + GR HA L G G GK + A L+A+ C PCGVC C ++E+G Sbjct: 12 AVLSGMAAGGRFPHALLLEGPAGCGKKTAAALIAQERLCTGAP--RPCGVCSGCIKVEKG 69 Query: 86 RFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+ + VE RD+ + AP G KVY++D+ H ++ + NALLK Sbjct: 70 VHPDVRFYTVPEGKKEFPVELARDIRQDAYIAPNEGACKVYIVDQAHTMNASAQNALLKI 129 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPP V F+L + ++ TILSR + L+ ++ L + Sbjct: 130 IEEPPAGVYFILLCENRAQMLPTILSRVVSVELETPSPDECAAALASL----EPDVPEEQ 185 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + A A G++ A +L A S D EA+V + Sbjct: 186 RRAAAAGAAGNIGQARALLKTAKPSK-------------AAADARLLR---EALVFGDRY 229 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + ++ L + ++A+ + + + + P Sbjct: 230 TALRILAAYDKDRAALGQTLALLREGFAQVALGRETD--------------ARFSNRVSP 275 Query: 323 TDIQLYYQTLLIGRKELPYAP 343 Q + R Sbjct: 276 GQAVAAAQIVQTARLRAERNT 296 >UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR Length = 553 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 120/323 (37%), Gaps = 60/323 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T DV+GQ+ +L+ L + + RI + + G G GKTSIAR + Sbjct: 126 EPLAERMRPRTIDDVIGQDLLLSQNSLLRSAIRCSRIP-SIILWGPPGTGKTSIARAIVT 184 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGR 119 N + G +A V+D RD ++ + + + Sbjct: 185 SANSQ-------------------GSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSK 225 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC L Sbjct: 226 RTVLFLDEVHRFNKSQQDSFLPVIED--GTIVFIGATTENPSFHLVTPLLSRCRVLTLSP 283 Query: 178 LDVEQIRHQLEHI-----------LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 L ++ L+ L + A++ L+ +G R AL+ + + A Sbjct: 284 LKPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVALNALEISAA 343 Query: 227 SGDGQ-----------VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVM 265 + + V+ L G + +L ++M ++ + + Sbjct: 344 TAAARVGSDGDLRLASVALDDAKEALQSKHLAYDRAGEEHYNLISALHKSMRGSDADASI 403 Query: 266 ALINEAAARGIEWEALLVEMLGL 288 + G + + ++ Sbjct: 404 YWLVRMLEGGEQPLYIARRLVRF 426 >UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacteria RepID=A8ZU04_DESOH Length = 459 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 118/310 (38%), Gaps = 51/310 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+ D+ GQ HV + L + L G + + + G G GKT++AR+LA Sbjct: 17 RPLADRMRPEKLEDLAGQPHVTGPDSLLRSALEKGTLF-SMILWGPPGCGKTTLARILA- 74 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 G+T +A + V++ R++++ + + Sbjct: 75 ------GMTGAA------------------YVQISAVLSGVKEIREVVEAARRRRGEFQK 110 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH ++ +A L +E + ++ ++SRC L + Sbjct: 111 DTILFVDEVHRFNKSQQDAFLPHVESGLVTLIGATTENPSFEVIPALMSRCRLIVLNPVP 170 Query: 180 VEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 E +R L L + + EP AL LA A+G +R AL+ + A Sbjct: 171 EEAVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALADGDVRTALNNLEAAALLRPAGT 230 Query: 231 --QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ V L G + +L +++ ++ + + + + G + Sbjct: 231 GVTITLAGVEQALDKKALLYDKSGEEHYNLISALHKSLRGSDPDAAVYWLERMLSGGEDP 290 Query: 279 EALLVEMLGL 288 +L M+ Sbjct: 291 FYILRRMVRF 300 >UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacillales RepID=C6D7W1_PAESJ Length = 436 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 127/351 (36%), Gaps = 56/351 (15%) Query: 6 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP+T D +GQEH++ L + ++ + L G G GKT++A +++K Sbjct: 17 LADRMRPETLDDYIGQEHIIGAGKLLRRAIEGDQVS-SILLYGPPGCGKTTLANIISKRT 75 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRFK 121 E A V+D R+++D + G+ Sbjct: 76 AGE-------------------------FVKLNAVDASVKDVREVIDTAKTNKLMYGKKT 110 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 + +DEVH + +ALL +E+ + F+ ATT+ + +LSR F L+ L+ Sbjct: 111 ILFLDEVHRFNTSRQDALLPAVEQ--GIIIFIGATTENPFHHVNGALLSRSTLFQLEPLN 168 Query: 180 VEQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 + ++ L ++ + E ALQ +A A G +R AL+ + A + + Sbjct: 169 EKHALEAMKRALTDKDRGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVTTPSEP 228 Query: 232 -----VSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ + + + D + +++ ++ + + G++ Sbjct: 229 DGSVRITMEVAQESIRKPTVRADTSTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDP 288 Query: 279 EALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 L ++ I + ++ L+ Sbjct: 289 MTFLRRLIVACSEDIGLANPQAMVQAVTAMDAYHKIGWPEAKYNIAQAILF 339 >UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-like ATPase n=4 Tax=Leptospira RepID=Q04QW6_LEPBJ Length = 423 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 128/341 (37%), Gaps = 57/341 (16%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LA K RP F +V+GQ L N R + + G G GK+++A +L Sbjct: 12 PLAHKIRPSGFEEVIGQTRATKQLVNY----RSPVSIILYGPPGTGKSTLAGIL------ 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 CR+ + +E +A S T V + + LL+ + + Sbjct: 62 --------------CRKWN----LPFVEYNAVS-TGVSEIKKLLERAEREGTI----LLF 98 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALDVEQ 182 +DE+H S ++LLK +E H+ + ATT+ ++ +LSRC ++ L E+ Sbjct: 99 LDEIHRFSASQQDSLLKGVE--TGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEE 156 Query: 183 IRHQLEH-ILNEE-HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVS 238 LE I N E I P A + L R + G R LS + S +S V Sbjct: 157 QSLLLERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVE 216 Query: 239 AML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L G D + ++++ ++ + + + G + ++ ++ Sbjct: 217 EYLESRVIEYDKSGESHYDVISAFIKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLI-- 274 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMREL-ARTIPPTDIQLY 328 I + A N + + L A +P + L Sbjct: 275 ---ILASEDVGNASVNGLPLAVSGLHALEAIGMPEGRLVLA 312 >UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacteroidetes RepID=A5FMX8_FLAJ1 Length = 425 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 118/306 (38%), Gaps = 48/306 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T D + Q H++ L +S G I + +F G G GKT++A++ Sbjct: 4 PLAERIRPRTLEDYISQSHLVGPNGSLTQQISKGIIP-SLIFWGPPGTGKTTLAQI---- 58 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGR 119 I Q E+ A + V+D RD+++ + + + Sbjct: 59 --------------------IAQESKRPFYELS-AINSGVKDIRDVIEKAKQSGGLFTAK 97 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + IDE+H S+ ++LL +E+ + ++ +LSR + L A Sbjct: 98 NPILFIDEIHRFSKSQQDSLLAAVEKGWITLIGATTENPSFEVIPALLSRSQVYILNAFT 157 Query: 180 VEQIRHQLEHILN--EE--HIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDGQV 232 + + L + +E + + L R + G R L++ + A AS + + Sbjct: 158 KDDLEALLHRAIKIDKELSSKNITLKETEALLRLSGGDGRKLLNIFELVVNASASDEIVI 217 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + V A++ G D + ++++ ++ + + G + + + Sbjct: 218 TNDRVLALVQQNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGEDVKFIA 277 Query: 283 VEMLGL 288 ML L Sbjct: 278 RRMLIL 283 >UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alteromonas macleodii RepID=B4S1N1_ALTMD Length = 295 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 101/261 (38%), Gaps = 25/261 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 T+L + ++HH L +G G+GK +A L+ L C+ PC C +C + G Sbjct: 12 TSLISRYLAKKLHHGLLLTGVSGIGKNQLALGLSNTLLCKHPSVDGPCEQCQSCHLRQAG 71 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 D +++ + V+ R+ + + G KV LI + ++ + NALLKTLEE Sbjct: 72 NHPDFHILESEKQLGVDKIREGIAKLSGTAQMGGNKVLLIPKADTMTEAAANALLKTLEE 131 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P + LL T KL TILSRC + L V + + L+ + + AL Sbjct: 132 PTNNTFLLLITDSVNKLMPTILSRCERQVLSLPSVSESLNYLK----AKGVEDASDAL-- 185 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE-RV 264 A G + + + L ++A++ + + Sbjct: 186 ------------------LAAYGYAPLRVEEALSGDDDLSYRHFSDGMQALLAGDANVQA 227 Query: 265 MALINEAAARGIEWEALLVEM 285 L N+ + ++ Sbjct: 228 QTLANKWQDNAQQIALWCQQL 248 >UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax=Actinomycetales RepID=A4XBZ5_SALTO Length = 427 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 115/365 (31%), Gaps = 53/365 (14%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + HA++F+G G G++ AR A L C G CG C C G D+ + Sbjct: 70 MTHAWIFTGPPGSGRSVAARAFAAALQCGHGSG---CGACPGCHTTMAGTHADVRLVVPD 126 Query: 97 S-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 V + R L+ P+ GR++V +I++ L+ + NALLK +EEPP FLL Sbjct: 127 GLSIGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFLLC 186 Query: 156 TT--DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 P + VTI SRC L+ + L EP A AA+G Sbjct: 187 APSIHPDDISVTIRSRCRVVPLRQPAPAAVAEVLVR-----RDGVEPDVANWAAAAAQGH 241 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLG------------------------TLDDDQA 249 + A L A + G D + Sbjct: 242 VGRARRLARDPQARTRRDAVLAVPRQLTGVGAAIDAAAALIGAAEAEAAALVADTDAAER 301 Query: 250 LSLVEAMVEANG--------ERVMALINEAAARGIEW---------EALLVEMLGLLHRI 292 +L A+ + E R + LV++ G Sbjct: 302 AALETALGAGGTGRRAASAFRGAAGQVKELERRQKSRATRAQRDALDRALVDLAGFYRD- 360 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A+ A + AR + +L R + R+ VE Sbjct: 361 ALTMALGAPVEPVHTDTATVAGAGARKWEADGALRRLEAVLACRAAIEANVKPRIAVEAM 420 Query: 353 LLRAL 357 +L Sbjct: 421 MLALW 425 >UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5_PELCD Length = 726 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 120/318 (37%), Gaps = 61/318 (19%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP+T + VGQ+H+L L + ++ + +F G G GKT++A Sbjct: 11 SSEPLASRMRPRTLEEYVGQDHILGEGRLLRRAIRADQLS-SLIFYGPPGTGKTTLA--- 66 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-AR 117 ++ A + V+D R+ +++ + + Sbjct: 67 ----------------------QVIANSTASRFVSMNAVLSGVKDLREAIEDARQSQEYY 104 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 + + +DEVH ++ +ALL +E+ + + ATT+ ++ ++SR F L Sbjct: 105 DKRTILFVDEVHRWNKSQQDALLPWVEK--GTIILIGATTENPYFEVNKALVSRSRVFQL 162 Query: 176 KALDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAI--- 225 L E +R + L + + EP AL L R A G R L+ A+ Sbjct: 163 LGLTEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVASGDARSLLNALQLAVETT 222 Query: 226 -------ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALI 268 A+ ++ A + G D + ++++ ++ + + + Sbjct: 223 PESFPPPANSRIHITLSAAEESIQQKAVLYDKEGDYHFDTISAFIKSLRGSDPDAALYWM 282 Query: 269 NEAAARGIEWEALLVEML 286 G + + ML Sbjct: 283 ARMVRAGEDPRYIFRRML 300 >UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42945 Length = 317 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 122/340 (35%), Gaps = 34/340 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + L N L G + HAYL G + + K L C C C C+ Sbjct: 7 QPVAVQTLLNSLQRGTLSHAYLLQGANLEEQMRVVLFFLKKLLCGK----EACEGCKVCK 62 Query: 81 EIEQGRFVDL-IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 +I DL A+ K+E R+L + Y FK+ +I++ L+ + NAL Sbjct: 63 QISNMHHPDLICVKTDAATLKIEQVRELQKALSYCNVESDFKMVVIEKADTLTIQAQNAL 122 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK++EEP + F L ++ + T+ SRC LK + EE+I Sbjct: 123 LKSIEEPEQQTIFFLLSSSSNNMLPTVRSRCQLLTLKPVGRS----------GEENI--- 169 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 R +G A + + G S + + + + L+E M+ + Sbjct: 170 --------RLTQGEYSLATAYLYEHYYKGLEAASHEYIHNTV-----QHLIVLIEGMLSS 216 Query: 260 NGERVMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 E ++ + E A L M LL + L +L + +A Sbjct: 217 QVEGLIHVSKAQGLWPSKSEQIAALSTMQALLQEVMYQVLGLQSLCRLYKDY-PSIETIA 275 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 R I+ + ++ + +M +E +LR Sbjct: 276 RENELPVIKKAMIGVEEAQRMMRSNTTGQMALEYAVLRLQ 315 >UniRef50_C2KTQ5 Possible DNA polymerase III subunit delta' n=2 Tax=Mobiluncus mulieris RepID=C2KTQ5_9ACTO Length = 471 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 122/368 (33%), Gaps = 46/368 (12%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + HA+LF G G G++ A+ A L CE T CG C C + +G D+ + Sbjct: 109 MTHAWLFVGPPGSGRSVAAKAFAAALVCEHPRE-TGCGTCRQCEAVRKGIHPDVTVMTTE 167 Query: 97 -SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 + V + +DL+ P RG ++V ++++ ++ S N LLK +EEPPE +LL Sbjct: 168 LVQVTVAEVKDLIRVAYQRPVRGAWRVIIVEDYDRVTEASSNVLLKAIEEPPERTVWLLC 227 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 + TI SRC L + L E +P +A + + Sbjct: 228 APSASAVLPTIRSRCRLVQLAVPTASAVADLLVRRDEVE----DPELAAAVAGESGAHIG 283 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTL------------------------DDDQALS 251 A +L + V+ M D+ + + Sbjct: 284 RARALAKNPELRARRLRMLETVAGMRSASDACWTAAALVKYVSLEAGARQATDDEAEKSA 343 Query: 252 LVEAM-------VEANGERVMALINEAAARGI---------EWEALLVEMLGLLHRIAMV 295 L+ ++ V A + W+ LL ++ G ++ Sbjct: 344 LLRSLGVNPDDPDFHPTREVKAQLKRLEESQKRRHKRLELDTWDRLLEDLGGFYRDAMVL 403 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 L + L R +A+ + + R L + + +E L Sbjct: 404 DLGAKTALQNQVLEPLIRRFIAQGNDAKTNIARLEAIRQARWHLMHNGQPTLTMEALCLD 463 Query: 356 ALAFHPRM 363 A + Sbjct: 464 LTAHKNDV 471 >UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C3PJW1_CORA7 Length = 415 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 65/368 (17%), Positives = 138/368 (37%), Gaps = 54/368 (14%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP-CGVCDNCREI-EQGRFVDLIEI 93 + H++LF+G G G++ A+ A L C + P CG C +C+ + + DL+ + Sbjct: 49 MSHSWLFTGPPGAGRSLAAQCFAAALMCTSADENGNPGCGRCPSCQSVLAKQAHTDLVYV 108 Query: 94 DAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 D + V + R+++ P+ ++V + ++ L + NALLKT+EEPPE Sbjct: 109 DPQEQFITVGEAREVIGRAASLPSVAPWRVVIFNKADRLRNEAANALLKTVEEPPERTVI 168 Query: 153 LLA--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 ++ + DP+ VT+ SRC ++ A VE + QL E + + L + Sbjct: 169 IMVAPSEDPEDFSVTLRSRCRYLYIPAPSVEGVVKQL----VAEGTSEDDARLAAVTTL- 223 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMV------------ 257 + A L ++ A ++ + G+ +L++ + Sbjct: 224 -RHVGRARHLVNEPAAQKRRAMAINLAEDVFHGSQAFQSVTALLKFIEKEAKDSHAAAEE 282 Query: 258 ----------------------EANGERVMALINEAAARG-----IEWEAL-LVEMLGLL 289 + + + + + + + + LV++ G+ Sbjct: 283 AERSKIEQSFGVGAKGKGATKAQRDARSALKDLEDLHKKRAKRRIADGLDIALVDLAGIY 342 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 M++ A + ELA+ + + + R++LP ++ Sbjct: 343 RDALMLK-VGADVEMTHPDFAGLAGELAQRVSEDGLLAAQSAIRTCREQLPQNVTPQVAF 401 Query: 350 EMTLLRAL 357 + + R Sbjct: 402 DGMVGRLR 409 >UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bacteria RepID=B8DU13_BIFA0 Length = 504 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 92/507 (18%), Positives = 173/507 (34%), Gaps = 75/507 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVL------TALANGLSLGRI--HHAYLFSGTRGVGKTSIA 55 + LA + RP T +VVGQ HVL LA+ S G + + + G GVGKT++A Sbjct: 17 RPLAVRMRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLA 76 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA- 114 ++AK + E +A + V+D R++L Sbjct: 77 HIVAKQSGRQ-------------------------YEELSAVTSGVKDLREVLRRAHERL 111 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQ 172 ++G+ V IDEVH S+ +ALL ++E V F+ ATT+ + +LSR + Sbjct: 112 VSQGKETVLFIDEVHRFSKSQQDALLPSVEN--RDVTFIAATTENPSFSVIKPLLSRSVV 169 Query: 173 FHLKALDVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 L++L+ E++R +E ++ + + A+ + R A G R +L++ + A + Sbjct: 170 VKLESLEPEELRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAAAGA 229 Query: 228 GDG-------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINE 270 D +++T VS ++ G D + +++M ++ + + + Sbjct: 230 VDESGSNVPAEITTDVVSTVMDVAAVRYDRNGDDHYDVISAFIKSMRGSDVDATLHYLAR 289 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART---IPPTDIQ- 326 G + + RI + + A +P I Sbjct: 290 MIRAGEDPRFIA-------RRIMIAAAEEVGMAAPQILQITVAAAQAVQMIGMPEARIIL 342 Query: 327 --LYYQTLLIGRKELPY-APDRRMG-VEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTA 382 + Y A ++ + V+ L+ + H R + Sbjct: 343 SEAAIAVATAPKSNASYTAINQALADVDAGLIGQVPLHIRNAPTTLMKSWGNHEGYHYAH 402 Query: 383 VMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPV 442 V Q P + +L R++ + + PA R Sbjct: 403 DYPNAVVEQQYMPDVLVGREYYHPNSRGYEREIGPRLDRIRAIIHGEPAPPAPTQTERKP 462 Query: 443 NNAALERLASVTDRVQARPVPSALEKA 469 Q + + A Sbjct: 463 TEPVDPAHTEHPGETQRSQMKGKNDDA 489 >UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KQW7_9GAMM Length = 321 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 99/281 (35%), Gaps = 25/281 (8%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F + + ++ + RI HA + G G G+ +A LA L C A CG Sbjct: 10 FEALPWHHDTVASVYHDSEQDRIPHALMLVGAPGTGRRQLAWSLAAMLLCSRPSVAGGCG 69 Query: 75 VCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CD CR+ G D ++ ++ R + +Q A G KV +I + Sbjct: 70 TCDVCRQFMSGAHGDSRWLEPEPEKRAIGIDQVRGAVQFLQQTAAYGGRKVLVIAPADAM 129 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP LL + ++LP T+ SRC + L EQ L+ ++ Sbjct: 130 TSAAANALLKTLEEPAGDSVMLLVSDYGERLPATVRSRCQRRVLSHPSREQGLTWLKSVV 189 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 G L L ++ V L + Sbjct: 190 EP-----------------AGDYSAVLDLVQDCPLEARRLINDDEVDGFLSL--QESIRG 230 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 L++ V + + A G + EM L + Sbjct: 231 LLD---GKVAATVASSLLGRAEPGRALRLICGEMDRRLRLL 268 >UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67486_AQUAE Length = 305 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 107/302 (35%), Gaps = 60/302 (19%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE---- 83 L I LF G G GKT A AKG+ C+ + CG C +C+ + Sbjct: 6 LEKLQKTLHIPGGLLFYGKEGSGKTKTAFEFAKGILCKENVPWG-CGSCPSCKHVNELEE 64 Query: 84 -------------------------QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPAR 117 G D + I + K+E R++ + PA Sbjct: 65 AFFKGEIEDFKVYKDKDGKKHFVYLMGEHPDFVVIIPSGHYIKIEQIREVKNFAYVKPAL 124 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R KV +ID+ H ++ + NALLK LEEPP F+L T + TILSR Q K Sbjct: 125 SRRKVIIIDDAHAMTSQAANALLKVLEEPPADTTFILTTNRRSAILPTILSRTFQVEFKG 184 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 V+++ + + +A+ + GSL+ A+ L + + + V Sbjct: 185 FSVKEVMEIAK---------VDEE----IAKLSGGSLKRAILLKE------NKDI-LNKV 224 Query: 238 SAMLGTLDDDQALSLVEAMVEANGE------RVMALI--NEAAARGIEWEALLVEMLGLL 289 L + L + E +M + + + L++ + L Sbjct: 225 KEFLENEPL-KVYKLASEFEKWEPEKQKLFLEIMEELVSQKLTEEKKDNYTYLLDTIRLF 283 Query: 290 HR 291 Sbjct: 284 KD 285 >UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAF1_9FIRM Length = 331 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 119/347 (34%), Gaps = 30/347 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V L + L ++ HA+LF G +G + A LLA+ L C+ C C +C+ Sbjct: 11 QPVVYQTLKHALVQKKLAHAFLFVGQKGTPRLETALLLAQSLICQHVHDGFACEECSDCQ 70 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPAR-GRFKVYLIDEVHMLSRHSFNA 138 I + + DLI +D AS+ K ++ L + KVY+++ + + N+ Sbjct: 71 RIAEANYADLILLDGASKSIKKDEILSLQERFNKTGLERSGQKVYILNNAENTTPEALNS 130 Query: 139 LLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK LEEP +L + ++ TI+SRC + L QI I EE + Sbjct: 131 LLKFLEEPQGSDTLAILIVENQDRILPTIVSRCQTLTFRPLTQRQI----HQIALEEQLD 186 Query: 198 HEPR-ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 L L R + + + + + ++ E + Sbjct: 187 ETDGYLLSHLIR----DVDQIKQTAEDEAYQNGMLMMRRFIREFPLREEEVLVWMQTEYL 242 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + E + + +L L A+ A + + Sbjct: 243 GSKDKE----------KDKRTFGYFIDCLLQFLRDAAVGHTEGPAWM------AEEIVKW 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + P + LL R +L + + + + + + Sbjct: 287 NQR--PLRLDQLIIVLLECRDKLSRSYNLPLLADQLIYQMKEGMKDE 331 >UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_LISW6 Length = 330 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 129/340 (37%), Gaps = 25/340 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITATPCGVCDNC 79 Q V+ + + R+ H YL G+ G GK A LA+ L C E T CG C NC Sbjct: 11 QPVVMKIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLERTETELACGKCANC 70 Query: 80 REIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 I D+ E D AS K++ R L + KV +I + ++ S N Sbjct: 71 MRIASHNHPDVHLLEPDGAS-IKIDQVRALKQELSKRGMESDQKVVIIYDAEKMTVQSAN 129 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLK +EEP + L TT+P ++ TI SR K+L + + QL Sbjct: 130 SLLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLLSQLTAA------G 183 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + ++ A GS+ A + + S V V + + L+ Sbjct: 184 ISEQKARIYASIT-GSIEQAKAFEEDDWFSEARNV----VIKLYEGMHHQGTSPLI---- 234 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 ++ + + AL +E+L LL+R + A + + + A Sbjct: 235 ------IIQESWMPLFKEKDKMALGLELLLLLYRDRLHLTLDENYEPICTAQKEILGQDA 288 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ + +L + +L + ++ +E +L Sbjct: 289 LRKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLVLEIQ 328 >UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=Marinobacter RepID=A1U0Y9_MARAV Length = 343 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 113/353 (32%), Gaps = 32/353 (9%) Query: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-----PCGVCD 77 + + L+ R+ HA L G +GVGK + A +A L C+ + CG C Sbjct: 13 RAWSTVQQRLAQDRLPHALLVVGEQGVGKRAWAEAVAGLLLCDQQVGLDDGAPIACGQCR 72 Query: 78 NCREIEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 C+ I D+ KV+ R L +P KV ++D L+ ++ Sbjct: 73 QCQLIAANSHPDVRVYSPEKSRMVKVDQIRALSTFAVASPQVAHRKVAIVDRADQLNINA 132 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN--E 193 NALLKTLEEP V LL + + TI SRC + D E L ++ E Sbjct: 133 ANALLKTLEEPLPDVTLLLLQESGRPVLPTIRSRCQALTIPLPDAEDAGRWLSARVSELE 192 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E I P L A + R AL + + M G Sbjct: 193 ESIRPSPDTLAKSLMLAGNAPRLALEYATGEFLAQRDEAFEAFRQFMKGQ---------- 242 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 M + R + G++ L E +A + Sbjct: 243 --MTVGDAARRFKTL------GLDDTLWLFE--SWAADLARCSAGGEVQD---PEAADML 289 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 LAR PP + + R Y + LL PR Sbjct: 290 GYLARANPPWRAHQLMERVRESRSAGIYNASPELEATQLLLAWRELMPRKRQT 342 >UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endopterygota RepID=Q17P00_AEDAE Length = 560 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 114/330 (34%), Gaps = 66/330 (20%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA K RP +D +GQE ++ T L I + + G G GKT++A ++ Sbjct: 134 SNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEKNTIP-SMILWGPPGCGKTTLAHII 192 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A +C++ +FV L A+ + V D ++ + + A Sbjct: 193 A-----------------AHCKKHGSMKFVKLS----ATMSGVNDVKEAVKLAKNDLAFK 231 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DE+H ++ + L +E + L +LSRC L+ L Sbjct: 232 RKTIMFMDEIHRFNKLQQDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVIVLEKL 291 Query: 179 DVEQIRHQLEHILNEEH---------------------IAHEPRALQLLARAAEGSLRDA 217 VE + L+ L + + ++ LA +G R A Sbjct: 292 GVEAVMKILKRALPQYKTVMFENNNRVPDIRGLPFVPRMMISAETIRWLAEICDGDARIA 351 Query: 218 LSLTDQAIA----------SGDGQVSTQAVSAML----------GTLDDDQALSLVEAMV 257 L+ A+ S ++S + + G + +L +++ Sbjct: 352 LNSLQLALNTVAARQDEEESALKRISLDEIKEGIKKSHLMYDRKGDQHYELISALHKSIR 411 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLG 287 ++ + + G + L+ M+ Sbjct: 412 ASDDNAALYWCSRMLVSGEDPRYLVRRMIR 441 >UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAW3_9ARCH Length = 345 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 120/344 (34%), Gaps = 8/344 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP+ +++G V+ L + I + L G +G GKTS+ LA Sbjct: 3 QMWTEKYRPKRLHEILGHVEVVKRLNGFVMEKTIPN-LLLWGPKGTGKTSLVYALANEFY 61 Query: 64 CETGITATP-CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFK 121 + C R+ ++ + + + + +P FK Sbjct: 62 GDDENLLRIECRDFIEQRKKWLKADKRFKFFYDEQKSAINIFKAMIKEYASLSPLNAPFK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + L + L + +E+ + +F+ +TT + I SRCL F +L Sbjct: 122 LLFFSNADYLPVYLQQGLRRVMEQSSKTCRFIFSTTKATSVIPAIRSRCLNFRFPSLAES 181 Query: 182 QIRHQLEH-ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ--AVS 238 L I + E + L+ L+ A+G A++L + A A+ + V Sbjct: 182 DAFGTLIRLISDAEGLKITEGGLKALSGYAKGDAGVAINLLE-AAATNSDTIDEDGLEVV 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQL 297 A A L+++ + + V A + I+ + +LVE+ L + Sbjct: 241 AENAFFQRRTAEELIDSAFASRHKDVRAGLEFLIRGERIDGKEILVEIHEALRSKMRAER 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 ++ + +L I + ++ + Y Sbjct: 301 KKSSKLFARLVLYEGEADLKLCYSLNTIIPLEEMMMKMSSQWRY 344 >UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchnera aphidicola RepID=HOLB_BUCAP Length = 328 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 106/316 (33%), Gaps = 29/316 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 + + HHA L +G+G + ++K L C C C C+ + Sbjct: 12 KKIIRLHERKKAHHAILIKTQKGMGVFKLVWFISKWLLCLKPKGTNFCDNCHGCKLMSAN 71 Query: 86 RFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D I V+ R + + + +G K+ + VH L+ + NALLK L Sbjct: 72 NHPDWHTIINEKNDVFDVDSIRVINEKIFKRAQQGNNKIIFLPNVHKLTESAVNALLKIL 131 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPPE F L + KL T+ SRC + L ++ + L++ +++I++ Sbjct: 132 EEPPEKNWFFLIDYNYLKLHSTLKSRCFLYRLPLPLEKESLNWLKNNNKKDNISNLTS-- 189 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 R + S A + + + + SL ++ + N + Sbjct: 190 ---LRINQDSPISAKNFIESDLWDERKNL----------------YKSLSHSIKDKNLLK 230 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 ++ ++ + + LL A+ + ++ Sbjct: 231 ILPVLC-----KKNTIMKIDWICLLLFD-AVKTNFNERKKLINCDQIKLINFFSKKYNNI 284 Query: 324 DIQLYYQTLLIGRKEL 339 + + R L Sbjct: 285 LLNKSIRKWTKCRYIL 300 >UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriobacteriaceae RepID=C8WLQ0_EGGLE Length = 446 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 65/404 (16%), Positives = 132/404 (32%), Gaps = 66/404 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T +VVGQ+ + + L N + ++ LF G G GKTS+A + Sbjct: 18 PLAVRMRPRTLEEVVGQDEAVGPGSWLRNAIEQDQLSSVILF-GPAGTGKTSLAHV---- 72 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 I + +E+ A T + R++ + A G Sbjct: 73 --------------------IAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRT 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H +R +ALL +E+ + ++ ++SR L L E Sbjct: 113 ILFVDEIHRFNRSQQDALLHAVEDRVLVLVGATTENPFFEVNSALISRSRVVELHGLSDE 172 Query: 182 QIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAI-------ASGD 229 +I +E L +E + +A + A G R AL+ + A + Sbjct: 173 EIVSLVERALADERGLGGRYRLDAKARDAIVLLAGGDGRAALTTLELAAGMVQPGTSKKP 232 Query: 230 GQVSTQAVSAMLG----------TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 +++ V A + D + +++M ++ + + + G + + Sbjct: 233 AKITEDNVRAATPHRSLPYDKNKDMHYDVISAFIKSMRGSDPDAALYWLARMIDGGEDPK 292 Query: 280 ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 + M A+ A + + A I + + + + Sbjct: 293 FIARRM-----------FIAASEDIGNADPQALLIAEAAFKSAEVIGYPECRINLAQAAI 341 Query: 340 PYAPDRR-----MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPV 378 A + G++ L R + + Sbjct: 342 YLALAPKSNAAEAGIDAALNEVRNGPSRNVPDHLRDRHRPGSEN 385 >UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Proteobacteria RepID=C6C7V1_DICDC Length = 447 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 70/352 (19%), Positives = 130/352 (36%), Gaps = 65/352 (18%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q LA + RP T A +GQ+H+L L + G++ H+ + G G GKT++A L+ Sbjct: 13 FQPLAARMRPTTLAQYIGQQHLLGPGKPLPRAIEAGQL-HSMILWGPPGTGKTTLAELIG 71 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + +E +A + ++D R+ ++ + GR Sbjct: 72 RY--------GEAD-----------------VERISAVTSGIKDIREAVERARQNRNAGR 106 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DEVH ++ +A L +E+ V F+ ATT+ +L +LSR + LK+ Sbjct: 107 RTILFVDEVHRFNKSQQDAFLPHIED--GTVTFIGATTENPSFELNSALLSRARVYLLKS 164 Query: 178 LDVEQIRHQLEHI-------LNEEHIAHEPRALQLLARAAEGSLRDALSLTD------QA 224 LD I L L +HI +LLA G R AL+L + + Sbjct: 165 LDTADIEQVLAQAMVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEV 224 Query: 225 IASGDGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAAR 274 A G ++ + A+ G D ++ +++ + + + Sbjct: 225 DADGQRVLTPALLKAVSGERSARFDNKGDRYYDLISAVHKSVRGSAPDAALYWYARIITA 284 Query: 275 GIEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELA 317 G + + +L + + + + A R A Sbjct: 285 GGDPLYVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQA 336 >UniRef50_P0AAZ6 Replication-associated recombination protein A n=338 Tax=cellular organisms RepID=RARA_ECO57 Length = 447 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 61/351 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RP+ A +GQ+H+L L + G + H+ + G G GKT++A ++ Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVI 70 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A+ N + +E +A + V++ R+ ++ + G Sbjct: 71 ARYANAD-------------------------VERISAVTSGVKEIREAIERARQNRNAG 105 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DEVH ++ +A L +E+ +L +LSR + LK+L Sbjct: 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSL 165 Query: 179 DVEQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTD------QAI 225 E I L + + + I + +A G R AL+ + + Sbjct: 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD 225 Query: 226 ASGDGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARG 275 SG + + ++ + G D +L +++ + + + G Sbjct: 226 DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAG 285 Query: 276 IEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELA 317 + + L + + + + A R A Sbjct: 286 GDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQA 336 >UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0V3_SYNWW Length = 320 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 123/334 (36%), Gaps = 39/334 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ +VGQE + L L G I HAYLF G GVGK S AR A+ + A Sbjct: 4 FSSIVGQERASSLLQKSLETGTISHAYLFLGPAGVGKMSCARAFAQAIIGRDDNDAM--- 60 Query: 75 VCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLD-NVQYAPARGRFKVYLIDEVHM 130 + DL+ ++ S E L+ + P R +V +I + + Sbjct: 61 -----VFFREKIHPDLLILEKEEGRSVISKEQISQKLEPWLGLKPYRASQRVAIIRDSQL 115 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLK LEEPPE+ +L D Q + TI+SRC +L + I L Sbjct: 116 MSNEAANALLKNLEEPPEYAVIILIADD-QNILETIVSRCQLVRFNSLADKDIEQILR-- 172 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + EP A +GS+ A+ + + + + Sbjct: 173 ----NREVEPLKAAQAASLGQGSVATAIRFAQ--------EKDYEKIWE----TSRNIIT 216 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L +GE ++ + A + E ++ ++ LL I + Q + + Sbjct: 217 DL-------SGEEIVEVYKSAERMELAPELIVNLLISLLRDINIYQQTRKEELLVLPGSS 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + R + P + ++ + + Sbjct: 270 E-LANSIRQVQPQHLTAALDKIMNLKNYYRSNVN 302 >UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopobium RepID=C8W9U5_ATOPD Length = 443 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 117/351 (33%), Gaps = 66/351 (18%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP T VGQE + + L + + + L G G GKT++AR+ Sbjct: 18 PLAARMRPTTLDGYVGQEDAVGPGSWLRKAIEHDTLS-SVLLYGPAGTGKTTLARI---- 72 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 I + +E+ A + T + R++ GR Sbjct: 73 --------------------IAHTTHAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRT 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + IDE+H +R +ALL +E+ + ++ ++SR L AL Sbjct: 113 ILFIDEIHRFTRSQQDALLHAVEDRIVVLIGATTENPYFEVNSALISRSRVVELHALSDN 172 Query: 182 QIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAI----------- 225 I ++ L E E A + + A G R AL+ + A Sbjct: 173 AIDELIQRALESEDGLAGAFVLEEDARKEIVTLAGGDGRAALTSLELASQMVDVPESADG 232 Query: 226 -ASGDGQVSTQAVSAM----------LGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AS ++ Q V G + D + +++M ++ + + + Sbjct: 233 KASEPLVITKQNVLEANPRRGLPYDKAGDMHYDIISAFIKSMRGSDPDAALYWLARMIDA 292 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 G + + + RI ++ A+ A + + A I Sbjct: 293 GEDPKFIA-------RRIMIL----ASEDIGNADPQALLIAHAAFRSAEVI 332 >UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISF8_ACIBL Length = 366 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 140/378 (37%), Gaps = 57/378 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--- 69 F+D G + + L GR HA + SG RG GK ++A+++AK +NC Sbjct: 1 MPFSDFHGNPATVQSAREMLGRGRFPHAVILSGPRGSGKFTLAQMIAKAMNCLEPPMTDD 60 Query: 70 --ATPCGVCDNCREIEQ------------------------------GRFVDLIEI---D 94 CG C NC I Q D++ I Sbjct: 61 GLPDFCGRCSNCERIAQADDLDARFTEAVEAREGLRETDKKETRILVQTHPDVLIIPPDP 120 Query: 95 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 KV+ R ++ ++ Y P +G KVY+ + + + + N+LLK LEEPPE L Sbjct: 121 PQMLVKVDQVRHVIGHIYYKPTQGEHKVYIFPTANFM-KEAANSLLKILEEPPEFATIFL 179 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + +P L TI SRC+Q L+A+ E + L +E R L+AR G + Sbjct: 180 LSENPSSLLATIRSRCVQLRLEAIAPEDVESYL----EKERPEWAARQRALVARLCGGGI 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A + D A + Q + + + + D + + E A A Sbjct: 236 GQART-FDLAAYTAARQDALTLLRSSVAAQDHTELFKVTEG-------------YRAGAE 281 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 G E L+ L + + LS + + +LA+++ +Q L Sbjct: 282 GKEKTDQLIRASYSLLQDLLYLLSGTPKLVRNTDLGSELTKLAQSVDLGWVQKAALKLGE 341 Query: 335 GRKELPYAPDRRMGVEMT 352 + R + ++ Sbjct: 342 VETGMRRNLLRSLSLDAF 359 >UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizobiaceae RepID=C6XHE7_LIBAP Length = 347 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 128/340 (37%), Gaps = 46/340 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC- 76 + G E + L+ GR+HHA LF G +G+GK ++ A + + P +C Sbjct: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 Query: 77 -DNC----REIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPARGRFKV 122 D C +++ D + + + V++ R + + G ++V Sbjct: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL +L Sbjct: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + LE + I + AA GS+ A+ +L Sbjct: 194 LYKALEQL----KIMGWDSKRDFVKIAAYGSVARAI--------------------KILH 229 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAAR--GIEWEALLVEMLGL-LHRIAMVQLSP 299 D S ++ + E + + + A + + ++ L I + + Sbjct: 230 YDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEI--CKSAK 287 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 AA + ++ ++ + + R+++ Sbjct: 288 AAALSGQLEEADQIAQI--YFSLVKRVHAFSMYNLDRRQM 325 >UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S906_LEPBA Length = 310 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 13/195 (6%) Query: 14 TFADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F V GQ+ LT + + L +I + +F G GVGK A A+ + C G + Sbjct: 7 SFEQVSGQDVALTYIKSFLKDRSKIPGSLIFYGPDGVGKWLAAERFARQILCLEGTS--- 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVED--------TRDLL-DNVQYAPARGRFKVY 123 CG CD+CR+ +G D I+ + R LL + + P +++ Sbjct: 64 CGHCDSCRQFMRGIHPDFIQFPRRKNIAIGKEKDPEEFTIRWLLSARIPFKPHTSDYRIV 123 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 L E + ++ + LLKTLEEPP H KF+L D L TI+SR + L ++I Sbjct: 124 LFPEANRINNEAETTLLKTLEEPPPHTKFILIVNDLHNLKQTIVSRSVCIPFHYLPQDEI 183 Query: 184 RHQLEHILNEEHIAH 198 + + + E + + Sbjct: 184 KKIRRNEIAEAKLYY 198 >UniRef50_D2UXA6 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UXA6_NAEGR Length = 356 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 117/378 (30%), Gaps = 46/378 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K RP + + + V L N G H L G G GK + + L + + Sbjct: 4 WLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPH-LLIHGPSGAGKKTRIQALLREIYNN 62 Query: 66 TGITATPCGVCDNC----------REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-- 113 + + G +++ D+ K + + + Sbjct: 63 KIDKVKLENKDVSVGSDGSKTITVTALSSGYHLEITPSDSGYYDKYVVANMIKEVAETDS 122 Query: 114 -------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 + A KV ++ EV L+R + AL + +E+ + + +L K+ I Sbjct: 123 VDFLSTGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIPPI 182 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRC+ + A E+I L+ + +E+I P Q + +G++R AL + + A Sbjct: 183 RSRCMAVRIPAPSDEEISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLESA-K 241 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + + G + + ++++ + ++ LL + Sbjct: 242 VEQYPFTKDQQVKLPGW--EKFVEEIAKSIIADQTPQT------LLKIRDDFFLLLTNCI 293 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 I L L ++ ELA + Sbjct: 294 AP--DIIFKTLLLKLLDLLDGEQAHQVIELAAKF---------------EHRMKCGSKPI 336 Query: 347 MGVEMTLLRALAFHPRMP 364 +E + ++ M Sbjct: 337 FHLEAFVASVMSLCQSMF 354 >UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E8800C Length = 318 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 64/348 (18%), Positives = 121/348 (34%), Gaps = 44/348 (12%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE L + L R HA + A+ L L C+ + CG CDNC Sbjct: 8 QEQ-WETLFHDLE--RFPHALIIHAQDNAVCDDFAQNLCHALLCQNRLADDACGACDNCL 64 Query: 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARG-RFKVYLIDEVHMLSR 133 + D +D V+ R L + + + K+ I H +++ Sbjct: 65 WVNNHSHPDFFSVDEEGNETTDKLIPVKVIRSLKNFFELTSHQSHGKKIAYIARAHRMNK 124 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 S NALLK +EEPP +L+T+ + T+ SR HL E L + Sbjct: 125 ESSNALLKIVEEPPNDCLIILSTSQLDAIIPTVKSRSRLVHLHQPVQEDGLAYLHTL--- 181 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 ++ + L S A++ D A S+V Sbjct: 182 -NLDMDASTLAFF----GNSPVAAINERD----------------------TFAHAKSIV 214 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 A+ E A+ N+ G+ W L+ M ++ + + +L+ + + + Sbjct: 215 RALSEGEALNPDAIKNDWLDYGLAW--LVTVMQKWIYDLLLFKLTQE--ISYFPGEKSAL 270 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++LA ++ ++ + L + ++ + +E+ ++ Sbjct: 271 KKLAGQSSLPNMLVFQKKLNEIKAYASKPVNKEINMEVMMMEYRKMFR 318 >UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4P896_USTMA Length = 566 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 121/314 (38%), Gaps = 45/314 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLT-ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + A + RPQT + VGQ V+ L L G+I + + G G GKT++ARLLAK Sbjct: 26 KPFAERMRPQTLDEYVGQSDVVNGPLKMLLRQGKIP-SMILWGPPGTGKTTLARLLAKSA 84 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRFK 121 + CR+ G +A+ + D + +LD + + Sbjct: 85 SSTD----------STCRQ---GPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRT 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + IDE+ +R + LL +E+ + +L ++SR F L L V+ Sbjct: 132 LLFIDEIQRFNRAQQDVLLPAVEKGQIVLVAATTENPSFRLQSALISRMRVFVLTKLSVD 191 Query: 182 QIRHQLEHIL---NEEHIAHEPRA------------LQLLARAAEGSLRDALSLTDQAIA 226 + L + L E + A ++ +A A+G R AL + A++ Sbjct: 192 ECCQVLRNALASVKRESDQADQHAECVAAAYIDEHLIRWIANMADGDARTALGALELALS 251 Query: 227 SGDGQV-STQAVSAM-------------LGTLDDDQALSLVEAMVEANGERVMALINEAA 272 + D V S + VS + G + D +L +++ ++ + + + Sbjct: 252 TTDASVCSAENVSRLKTALKRTALQYDRTGDMHYDTISALHKSIRGSDADAALYWLARMV 311 Query: 273 ARGIEWEALLVEML 286 G + + ++ Sbjct: 312 CSGDDALFIARRLI 325 >UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBH1_KANKD Length = 332 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 118/319 (36%), Gaps = 30/319 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 + + G + HA L G G+G+ + A+ LA+ L C CG C +C E G Sbjct: 13 KRVQDQFQQGSLPHAILLMGPEGIGRENFAQSLAEWLLCLNRQD-EACGECKSCFLFEAG 71 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D +D ++ V R+L+ +Q + +G +KV I V ++ SFNALLKT Sbjct: 72 HHPDYHLLDIEQDKTQISVGQVRELITAMQESSHQGGWKVANITNVQAMNASSFNALLKT 131 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP ++ +L T+ Q +P+TI SR L E+++ L Sbjct: 132 LEEPQDNTLLILQTSQLQGVPLTIRSRAQLLSLSVDGSEEVKAWLIER------------ 179 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 +G++ AL + V+ + + + + + Sbjct: 180 --------QGNMTQALEAAINLFPQAPYKAEDFGVNGDT-LKYAEFIVQINDLVAGKGSP 230 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + + + + M + I ++Q + + + LA+ I Sbjct: 231 --IEMAQFWHEELADAVFWMQLM---VRDILLLQQANKEADLLFMQQKQELEGLAKAING 285 Query: 323 TDIQLYYQTLLIGRKELPY 341 L + + ++ + Sbjct: 286 QGWLLLLEKINELQRLIKQ 304 >UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU Length = 294 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 117/289 (40%), Gaps = 30/289 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++RPQ +VVGQE ++T N + H +F G GVGKT++A Sbjct: 3 WTEEFRPQNLDEVVGQERIVTFFRNLGKSDISKWPH-VIFYGPPGVGKTTMA-------- 53 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKV 122 I +++I+++A+ K++D + V+ P +G K+ Sbjct: 54 ----------------HAIANEYDIEIIDMNASQYRKIDDMENQIFSIVKQIPEKGARKI 97 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +DE L+ +S L + +E+ F+ A K+ + RC +F+ LD E Sbjct: 98 LFMDEADALTPNSQWLLRRMMEDYSNVTLFMFACNYDAKIIPALYDRCAEFYFNGLDSES 157 Query: 183 IRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++ +I E L L +++GS R +L Q + G ++ +S L Sbjct: 158 LKKVAINICQSEGRDVPSEDTLNKLIESSDGSARSFTNLLFQYLVGGTMPETSFKISEYL 217 Query: 242 GTLDDDQALSLVEAMVEANGERVMA-LINEAAARGIEWEALLVEMLGLL 289 + + + + + + ++ ++ G ++E ++++ Sbjct: 218 KAIKLNDLENAKKIVAKTTYHELLKQVLTVLLKYGEKYEDAIIKLGDYF 266 >UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E5_ACIC5 Length = 368 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 137/377 (36%), Gaps = 56/377 (14%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--- 69 F+D +G E + L ++ GR+ H+ L +G RG GK ++A +LA+ +NC Sbjct: 1 MGFSDFIGNESAVRHLREAVAAGRVPHSLLMAGPRGAGKYTLALMLAQAINCLRQPVTDG 60 Query: 70 -ATPCGVCDNCREI------------EQGRFVDLIEIDAASR------------------ 98 CG C NC I DL E D Sbjct: 61 LPDFCGECANCERIGQAMDLTARVDEAIAAREDLRETDKKETRILVQTHPSVLVIPPDPP 120 Query: 99 ---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 K+ R L+ V P+ R VY+ + + + N+LLK LEEPP H +L Sbjct: 121 QLLIKLGQVRTLIREVYRTPSEARRSVYIFTSASFM-KEAANSLLKVLEEPPSHALIILL 179 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 +P +L TI SR L A+ EQI L +P L+AR AEG++ Sbjct: 180 AENPGELLPTIRSRTSLIRLGAIATEQIEPLL----ASRRGDLKPAERALVARLAEGAVG 235 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 ALS D + Q + L D + E A A G Sbjct: 236 RALS-FDLPAYLTYRNEALQMLRFTLQQNDHSTLFRMTEG-------------YRAGAEG 281 Query: 276 IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 E L+ L L ++ LS A+ ++ + +A+ I I+ + L Sbjct: 282 QEKTVGLIRTLRSLLEDLLLHLSGASGLVRNIDLQRELSAMAQQIDVEWIERAARGLQSV 341 Query: 336 RKELPYAPDRRMGVEMT 352 + R + ++ Sbjct: 342 ESGMRRNLLRSISLDAF 358 >UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RA91_9FIRM Length = 325 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 66/339 (19%), Positives = 125/339 (36%), Gaps = 31/339 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L N L R+ HAY+F+G G GK A LLA+ + C+ C C C+ Sbjct: 10 QPIAYQTLENALCQDRLAHAYMFNGPSGTGKKEAAYLLAQSILCDA--EGFACESCAICQ 67 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGR-FKVYLIDEVHMLSRHSFNA 138 + + D+I +D +++ K ED L G+ K+Y++D + + N+ Sbjct: 68 RVLHNEYSDMIYLDGSTKAIKKEDIMKLQSAFSKTGLEGKGKKIYILDHAENATVDALNS 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP + +L ++ TI+SRC AL + ++ E Sbjct: 128 LLKFLEEPNSDMIAILLVEALDRVLPTIVSRCQIIPFIALGSDVCYNE----AKAEIDDL 183 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + L R +DA+ + + Q V + L L Sbjct: 184 DAYLLSRWIR-----QKDAIVAASETEDYQHARFVFQGVVERYLVSPHEALLFL------ 232 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA- 317 ++ ++ G + +V+ML I M + + + ++ +A Sbjct: 233 ----QLEGFPSKQKKYGKQAFGYVVDML----NILMKDAFKGSAITQDSWYQKQLTSIAD 284 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + + +L + + ++ + L + Sbjct: 285 KNYDYRKLAQIFM---DTKDKLLRSVNIQLLADQMLYKM 320 >UniRef50_Q6WI74 Gp44 n=1 Tax=Vibrio phage KVP40 RepID=Q6WI74_BPKV4 Length = 318 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 115/313 (36%), Gaps = 53/313 (16%) Query: 1 MSYQV------LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 54 M+ Q +K+RPQ+ D V E V + +I + L S + G GKT++ Sbjct: 1 MAIQSVANELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTV 60 Query: 55 ARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQY 113 AR + + E ++ ++A+S + ++ L Sbjct: 61 ARAVLADMGYE------------------------VLFVNASSSRGIGLVQNDLPAFCST 96 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 G K ++DE L+ + AL +E+ ++V+F+L QK+ I SR +F Sbjct: 97 VSFSGNPKAVILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEF 156 Query: 174 HLKALDV------EQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDALSLTDQAIA 226 +Q+ + I +E ++ A L+ L + R + Sbjct: 157 EFVYNKEEQLSCVKQMIVRSMQICKQEGVSVTNAAVLKELVKRNYPDNRKTIVSLQN--Y 214 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + +G + +S + D +++A+ + + V +LI + + ++ Sbjct: 215 ARNGVIDEGILSEITAN---DDISEMLDALKSKDFKTVRSLIPKYSG----------DIA 261 Query: 287 GLLHRIAMVQLSP 299 LH + + Sbjct: 262 SFLHNLYKAAYTH 274 >UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGN9_9GAMM Length = 331 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 5/204 (2%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + L + GR+ HA L GT G G+ +A LA+ L C CG C C Sbjct: 20 HQETWINLQAQCANGRLPHAMLLEGTPGTGRNRLALSLARYLLCGDMSAQGNCGSCKTCT 79 Query: 81 EIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G DL+ + A ++ R+++ P GR KV LI L++ +FN Sbjct: 80 LSASGAHPDLLTVMPAETGKAIGIDAIREVIRFAAGTPTLGRSKVMLISPAESLTQAAFN 139 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A LK LEEP ++ + LP TI SRC ++ L + +++ R L+ L+ A Sbjct: 140 AFLKCLEEPSSETFIVMVSASGYPLPATIRSRCQRWKLPSPSLKESRAWLQEALS--GDA 197 Query: 198 HEPRALQLLARAAEGSLRDALSLT 221 ++ + + G AL Sbjct: 198 DGAASIDAMLELSGGRPLYALEKL 221 >UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH Length = 329 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 134/358 (37%), Gaps = 47/358 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 Q+ LA+G R+ A L +G +G+GK AR LA+ L CE + CG C+ C Sbjct: 7 QQADWHQLAHGFE--RLPGALLLAGPQGIGKDRFARFLAQSLLCEQPVADHAACGECEAC 64 Query: 80 REIEQGRFVDLIEIDAASR-----------TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 R G D + SR K+E RD++D Q RG +V +++ Sbjct: 65 RWFAAGNHPDYRYLAPESREDDKGARRLAQIKIEAIRDMIDFAQLTAHRGGRRVIVLEPA 124 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ + NALLK LEEPPE V F+L P++L T+LSRC L D EQ L Sbjct: 125 EALNLAAANALLKILEEPPEDVHFILVAHHPRRLLPTLLSRCRTLVLTPPDAEQALDWL- 183 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +A + L G AL+ ++ Sbjct: 184 ---TANGVADAGQELAHA-----GGAPFALTEPERIPLRER------------------- 216 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L++ + + +++++ E + L + LH + V L+ + Sbjct: 217 ---LIDTLAHPDAGQILSVAAELDRARLALAEPLDWLRKWLHDLMSVTLAGS--VRYHPE 271 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + + LA + + + LL + + R+ +E L + Sbjct: 272 RQAELSRLAGRTDAVRLVRFDRELLERVPFGQHTLNVRLQLEALLFDYQSLFAAARAA 329 >UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=cellular organisms RepID=Q11HZ8_MESSB Length = 354 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 128/314 (40%), Gaps = 41/314 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VG E+ + LA+ G++HHA LF+G G+GK ++A LA L P D Sbjct: 25 LVGHENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRLGPLDFSD 84 Query: 78 ------NCREIEQGRFVDLIEID---------AASRTKVEDTRDLLDNVQYAPARGRFKV 122 + R QG ++ + + V++ R + + P G ++V Sbjct: 85 IDTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSLTPPDGGYRV 144 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++ ++ NALLK LEEPP F+L T +L TI SRC + L L Sbjct: 145 VIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKLDPLSPGL 204 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + + +LL + A+GS RDA+ LT+ G ++ QA+ +L Sbjct: 205 LEKLLQSLGAS--LPETEEERRLLIQRAQGSARDAILLTE----FGGLEI-EQAIENLLE 257 Query: 243 TLDDDQ--ALSLVEAMVEANGERVMALINEA-----------------AARGIEWEALLV 283 D A L EA + L N A A+ + Sbjct: 258 QRRFDVPAAYKLAEAATGRERQVQFDLFNRAVLDRVANAASHSASAGDIAQAERFANFWE 317 Query: 284 EMLGLLHRIAMVQL 297 E+ + ++ + L Sbjct: 318 ELAETIRQVEIFNL 331 >UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8S3_ALHEH Length = 337 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 125/333 (37%), Gaps = 33/333 (9%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIE 83 L+ L + G++ HA L +G G GK+ + L + L C CG C++CR + Sbjct: 29 LSELLRQAASGQLPHALLLAGPAGTGKSLLGGHLVRALLCHQPGEGGRACGRCESCRALA 88 Query: 84 QGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 +G D + R V+ R L + + G +++ LID L+ ++ N+LLK Sbjct: 89 RGLHPDFRHLAPEERAVITVDAVRALGRFLNLSARFGGWRIALIDPADTLTVNAANSLLK 148 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEPP +L ++ P +LP TI SRC + E+ L + + R Sbjct: 149 TLEEPPATTLLVLVSSRPAQLPATIRSRCRHLTIPVPPAERALSGLRG----QGLTVTER 204 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L A G+ L+ + + +++ ++ G D + Sbjct: 205 TLA----LAGGAPFRGLAWEEAGLPERLDRLAADLLALHQGRQDPIAL--------ARDW 252 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + L + LL +A Q A A LR Sbjct: 253 ADL------------DLPVFLDVLATLLAELARFQAGGAEASRAAPAAPLRALA--AETT 298 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 PT + + + + + + + ++ E L+ Sbjct: 299 PTAVLGHLEAVHEAQYRQGHPLNPQLVRESLLV 331 >UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota RepID=A8BBR2_GIALA Length = 351 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 133/356 (37%), Gaps = 52/356 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K RP ++ Q+H + A + G + H L G G GKT++ + Sbjct: 1 MSA-PWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPH-MLLYGPAGTGKTTLIHAMMH 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 A + E +A++ ++ R+ + ++ Sbjct: 59 EFFGPRFWRAR------------------VSEFNASTDRGIKIVRERIKSIARTVIAVAP 100 Query: 118 ---------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 F+V ++DE L+R S AL + +E+ E +F + P ++ I+S Sbjct: 101 DDVKAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVS 160 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAH----------EPRALQLLARAAEGSLRDAL 218 RC +F +L I +LE I E AL +A ++G +R A+ Sbjct: 161 RCARFAFSSLPRPLIIDRLESICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAI 220 Query: 219 SLTDQAIASGDG---QVSTQAVSAMLGTLDDDQALSLVEAMVEAN--GERVMALINE-AA 272 +L + ++S + V + G + D+ SL+E M + + E ++ +++ Sbjct: 221 TLLQATVQFCQNMEEELSPKHVHLLAGKIPDELIASLIEKMTDVSLPVESLIEYLHKSVV 280 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTIPPTDIQL 327 G ++ E+ + P +L + + R +AR + + I Sbjct: 281 RIGYPALDVIREL---WRSLCFEAQVPESLRHAVGDAYQRAGLYVARRVSDSSILE 333 >UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NRQ8_CHRVO Length = 334 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 124/343 (36%), Gaps = 49/343 (14%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVD 89 R+ A+LF+G G+GK + A LA+ L CE+ PCG C CR G D Sbjct: 14 SAERERMPGAWLFTGAAGIGKLAFAEHLAQSLLCESPAAGHQPCGQCQGCRWFHSGTHPD 73 Query: 90 LI----------EIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 E A + K+E R+++D R +V L++ L+ Sbjct: 74 FRRLSPFADEEEEGKEAKTTRKLPQIKIEAVREVIDFAHLTAHRAGRRVILVEPAESLNL 133 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLK LEEPPE V FLL + PQ+L TI SRC QF L L+ Sbjct: 134 AAANALLKILEEPPEAVLFLLVSHAPQRLLPTIRSRCRQFALTRPAESAALAWLK----- 188 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E A A + L D +A+ G Q V LG L L Sbjct: 189 -----EQGVANAEAELAH-NGGAPLFDHDPELAALRG----QFVRG-LGQPSFAGMLQLA 237 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 E + + ++ L + LH +A + L+ E + Sbjct: 238 ELIDKNKQLSLL--------------QPLSWLQKWLHDLAALCLAG--RVRYYPDHERAL 281 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 LA + Q L + + R+ +E L+ Sbjct: 282 AALAPRCDAVQLMACQQALTALAPFSQHTLNARLQLEAVLMDY 324 >UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD Length = 649 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 103/268 (38%), Gaps = 27/268 (10%) Query: 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 +L+E++A+ ++ RD + N + G ++ +DE L+ + +AL +T+E+ Sbjct: 403 NLLELNASDERGIDVVRDRIKNFARSSFGGYDHRIIFLDEADSLTDDAQSALRRTMEQFA 462 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 ++ +F+L+ K+ I SRC F L IR Q + I E+I L L Sbjct: 463 DNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDGLDALV 522 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 AA G +R A++ QA A+ V + V + T + ++V A ++ + + Sbjct: 523 YAAGGDMRRAINSL-QAAATTGEVVDEETVYTITSTARPEDIETMVTAAIDGDFTTARSQ 581 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + ++ +++ LHR A + Sbjct: 582 LQTLL---VDTGMAGGDIIDQLHRTAWNLD----------------------LDEETTVR 616 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + + + ++ +E L Sbjct: 617 LLERVGEADYRITVGANEQVQLEALLAS 644 Score = 63.9 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 ++ K+RP T ++ GQE + L + + + H LF+G GVGK Sbjct: 15 EIWIEKYRPATLENIYGQEDTVDRLQSYIDRDDLPH-LLFAGPAGVGK 61 >UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alphaproteobacteria RepID=A7HXT6_PARL1 Length = 387 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 137/370 (37%), Gaps = 49/370 (13%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC------- 64 P+ A +VGQE AL GR+HHA+L +G +G+GK ++A +A+ Sbjct: 18 PREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEAA 77 Query: 65 --ETGITATPCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQY 113 ++ G +L+ + + V++ R + Sbjct: 78 RAAGARDLNISPDEGVFHQVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFFGL 137 Query: 114 APAR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 G ++V +ID ++ +S NALLK LEEPP + FL+ + P +L TI SRC Sbjct: 138 TATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCRT 197 Query: 173 FHLKALDVEQIRHQLEHILN---------EEHIAHEPRA-LQLLARAAEGSLRDALSLTD 222 + L I +E + A P A Q +A+ AEGS ALS Sbjct: 198 LRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALS--- 254 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE--WEA 280 ++A G + L+ + + V A ++A +G + +E Sbjct: 255 --------------IAAGGGLGLYKELAGLLAGLPRLDIAAVHAFADKAGRKGADDAYET 300 Query: 281 LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 ++ + L R+ + +A M LA ++ + Sbjct: 301 MIELLTHWLQRLVRTGAGLHPGPDIVAGEGAAMARLAAGGSLDRWVEVWEKINQSTARGE 360 Query: 341 -YAPDRRMGV 349 DR++ + Sbjct: 361 ALNTDRKLVI 370 >UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F86 Length = 422 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 121/351 (34%), Gaps = 68/351 (19%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M + LA + RP+ D++GQ H++ L + +G++ + + G GVGKTSIA Sbjct: 1 MKKEPLAYRMRPKKIEDIIGQSHLVGDGKLLRRMVDVGQLS-SMILYGPPGVGKTSIA-- 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 I ++A K + ++ Sbjct: 58 ----------------------TAIAGSTDTPFKLLNAVVHNKKD-----MEIAVAEAKM 90 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + ++DEVH L + + LL LE+ + + I SRC F L++ Sbjct: 91 HGQLIVILDEVHRLDKAKQDFLLPHLEKGLIILIGATTANPYHSINPAIRSRCQIFELES 150 Query: 178 LDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD- 229 L + I+ L + +E I E A+ LA G +R AL+ + A+ S Sbjct: 151 LTPDDIKTALIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALELAVKSTFA 210 Query: 230 -----GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 +S + + + G D + +++ ++ + + Sbjct: 211 TEDGIKHISLETAESCIQKKSFHHDKDGDAHYDVLSAFQKSIRGSDVNAGLHYLARLLEA 270 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 G ++ + R+ ++ L N A +R LA + Sbjct: 271 G--------DLTSIARRLLVISYEDIGLANPQAG----VRTLAAIESAERL 309 >UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B6_LYSSC Length = 290 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 113/333 (33%), Gaps = 46/333 (13%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + + + G++ HAYL G+ A + + + C+ CG C NCR I+ Sbjct: 1 MKSIFQKLIWTGKLAHAYLLVGSS----LEFALWITQCVYCK---DQNACGQCANCRRIK 53 Query: 84 QGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D+ I ++ KV+ R+L G+ +V++ID + ++ ++ NALLK+ Sbjct: 54 HGNHPDVHIIVPDGTKIKVDQIRELQREAALKAVEGQKQVFIIDNANKMNENAANALLKS 113 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + +LL + + TI+SR +K ++L + ++ Sbjct: 114 LEEPLQDTLYLLVSETKNNILPTIISRVQTLKMKE------ENRLVDEAEKNNLHL---K 164 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + S+ D S ++G+ + + ++ + Sbjct: 165 YLNIYEDCNLSINQLEKYKD----------SIDEWIDVIGSTFSQNTSNALLSVQTSW-- 212 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + V M + +++ ++ Sbjct: 213 ------DNIFNDKESKHLATVLMQSYVRSALLIKRGKPSIWKIDVP-----------YSW 255 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + + +K + + +E + Sbjct: 256 DQLVQLEKRVNNIQKAIYSNGHFLLAMEDFFIH 288 >UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21K67_SACD2 Length = 331 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 15/248 (6%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 E V A L+ R+ HA L +G G+G ++A+ + + L C + + CG C C+ Sbjct: 13 ESVWDEFAEKLAQKRVPHALLITGQEGLGSDTLAKAMGQLLLCLSPLEGIACGKCRACQL 72 Query: 82 IEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 ++ G DL+ I + K++ R + + V +G KV ++ ++ +S NA Sbjct: 73 LQAGSHPDLLWIAPEEAGKQIKIDQIRRVTEFVSKTAQQGGKKVVVVTPTEAMNNNSSNA 132 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK+LEEP +L T ++ TI SRC + L + + L+ ++ I Sbjct: 133 LLKSLEEPAGDTVLILITFQESQILPTIRSRCARIVLTTPSYDVAQSWLQENGHQAAIPL 192 Query: 199 EPRA-------LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD---DQ 248 A ++ L + A++ +Q + G VS V+ + G + Sbjct: 193 LGEAGGAPLKGVEWLKTEYVEQRQKAMACLEQLASQTRGPVSA--VAQLGGISAPVLVEL 250 Query: 249 ALSLVEAM 256 L+LV+++ Sbjct: 251 MLNLVDSL 258 >UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bifidobacterium RepID=B3DUA0_BIFLD Length = 383 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 133/390 (34%), Gaps = 56/390 (14%) Query: 15 FADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ V+ L+ +I ++L G G G++++AR A L E+ Sbjct: 4 WDSLVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAAAL--ESPDHGMS 61 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +++ G D+ + ++ R+++ + PA +++ +I++V + Sbjct: 62 AEPTRVTQQVLAGTHPDVTVLTTNKVTIGIDQVREIITTSEQMPATAPWRIIIIEDVDRM 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N LLK +EEP EH +LL Q + TI SR +L + + L Sbjct: 122 LERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAGFLTSTT 181 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 N EP+ Q AR AEG + A D + V +L A+ Sbjct: 182 N-----VEPKVAQRAARLAEGHIGIAKLYATDERVMSDRD---ELVVGVLNLARASDAVL 233 Query: 252 LVEAMVEANGERV------------------------------MALINEAAARGIEWEAL 281 L +++ + + A+ + + L Sbjct: 234 LAGNLIDNAKAQAEADANRITAGQEAEFRRINGLAPSDRIPPKLRGAFNQIAKKDDVKRL 293 Query: 282 ------------LVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 L + + +A++Q + ++G + EL+ + Sbjct: 294 VTRRTRDVLDRALNSIASIYRDVAVLQNNAEDSVGLINLENRSSITELSVRLNRAGAVTR 353 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + RK L + + E + Sbjct: 354 LDEVAHARKRLAGNGNPLLVFESLFCTLIP 383 >UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCB5_RHOVA Length = 353 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 107/281 (38%), Gaps = 16/281 (5%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P+ + G + G +HHA+L +G RG+GK S A A+ L G A Sbjct: 19 PRLADALFGHNEAEAMFLRSFNAGALHHAWLITGERGIGKASFAWRAARFLLSRDGEAAG 78 Query: 71 ---------TPCGVCDNCREIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARGR 119 R+I G L E AS V++ R L + G Sbjct: 79 SGRAPATSLDVPSSHPTARQIAAGAHSSLFALEAGGASTIGVDEVRKLRAFLGLTS-PGG 137 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++ ++D + L+ S NALLK +EEPP+ F L + + TI SRC++ L+ LD Sbjct: 138 WRAMIVDPANDLTIASANALLKAVEEPPQRTVFFLVSHGAAAVLPTIRSRCIKLALRPLD 197 Query: 180 VEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + E +Q L A GS AL+L + ++ + V Sbjct: 198 TAPFACAVEAACARAGLDAPEAEQMQRLHALAGGSAGRALNLIGGGLLKLADKL--ERVM 255 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 L D L+++ A A + + IE Sbjct: 256 DGLRRPDQAAVHDLIQSASGAKNADTFARLCDLIEERIEAR 296 >UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacterales RepID=A8LRV9_DINSH Length = 381 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 116/359 (32%), Gaps = 46/359 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ V G L + ++ R+HHA+L +G +G+GK S A A+ L Sbjct: 19 PRFATRVFGHGAAEADLLDAVASDRLHHAWLLTGPKGIGKASFAWRAARFLLATPASDPG 78 Query: 72 P---------------CGVCDNCREIEQGRFV---------DLIEIDAASRTKVEDTRDL 107 P R I D V+ R L Sbjct: 79 PSLFGDAPAAATSLDIDPDHPVARRIAALSDPRLYLLRRPYDEKTSRFKQDIPVDAARGL 138 Query: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + G +V ++D ++ + NALLK LEEPP LL P KL TI Sbjct: 139 KGFFTMSAVDGGRRVVIVDAADEMNASAANALLKVLEEPPVDTVILLVCHAPSKLLPTIR 198 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC + L + L L L L AEGS+ A++L Sbjct: 199 SRCRTLRMGPLSEPDLGDALAQAL---GAPLPDAELASLNALAEGSVGQAITL------- 248 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G L L++ + + + L AAARG E L+ ML Sbjct: 249 ----------RDAGGPEAYGSLLGLMDGLPRLDRPATLKLAESAAARGAEARFDLLLMLT 298 Query: 287 -GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 L R+A + ++ LA T Q L+ + A + Sbjct: 299 ETFLFRLARTGATGHPPTGASPQEAALLQRLAPTAQAARGWATAQATLLAKARAGRAVN 357 >UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacteria RepID=C8R0G7_9DELT Length = 461 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 62/320 (19%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP D VGQ H+L LA G + + L G G GKT++AR+L Sbjct: 21 PLAERMRPARLDDFVGQRHLLADDKLLAGLSRHGYLP-SLLLWGPPGSGKTTLARIL--- 76 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 G D + A + V++ R++++ + GR Sbjct: 77 ---------------------AGGSGADFVFFS-AVLSGVKEIREIVERSRRIRAESGRG 114 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ +A L +E + + +LSRC L L Sbjct: 115 SVLFVDEIHRFNKSQQDAFLPHVEAGLITLIGATTENPSFHVIAPLLSRCRVIVLNPLAA 174 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 E ++ LE L++E + A L A+G R L+ + A A Sbjct: 175 EDLQIILERALSDEERGLGKLRLKISREAADHLISIADGDARSLLNSLEIAAALAQDQAR 234 Query: 231 ------------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALI 268 Q+ V + G + +L +++ +++ + + + Sbjct: 235 GQTASQEIGGEVQIGLTTVEEAIQRHSLRYDADGEEHYNLISALHKSLRDSDPDGALYWL 294 Query: 269 NEAAARGIEWEALLVEMLGL 288 A G E + ++ Sbjct: 295 GRMLAAGEEPLYIARRLIRF 314 >UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacteria RepID=C5RHF7_CLOCL Length = 424 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 111/319 (34%), Gaps = 60/319 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RPQ +VVGQ H++ L + I + +F G G GKT++A ++AK Sbjct: 2 KPLADRLRPQVIEEVVGQSHLIGQNKILTKIIESQHIPN-MIFYGPPGCGKTTVANIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 N A+ +D ++++ + + Sbjct: 61 ATNKR-------------------------FFKLNATNASTKDIKEIILELDTF-MGAKG 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+ ++ +LL+ +E + + ILSR F K + Sbjct: 95 VLLYLDEIQNFNKKQQQSLLEFIENGSITLIASTTENPYFYVYNAILSRSNVFEFKMVSS 154 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 + I L + I E AL+ ++ A G +R AL+ + A+ S Sbjct: 155 DDIEKALMRAVEVLQNDFKSSKILLEDEALKYISAIAGGDVRKALNALELAVFSSKAKDN 214 Query: 231 --QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ A G D + +++ ++ + + + G Sbjct: 215 IIKIDINAAYDATQRKIMNFDKDGDGHYDVLSAFQKSIRGSDADAAVHYLARLIRGG--- 271 Query: 279 EALLVEMLGLLHRIAMVQL 297 ++L + R+ ++ Sbjct: 272 -----DLLSICRRLMVIAC 285 >UniRef50_O34528 Uncharacterized AAA domain-containing protein yrvN n=349 Tax=cellular organisms RepID=YRVN_BACSU Length = 421 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 116/346 (33%), Gaps = 56/346 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP D++GQ+H++ + + + + + G G+GKTSIA Sbjct: 2 KPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLS-SMILYGPPGIGKTSIA----- 55 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 I + +++A K + ++ V Sbjct: 56 -------------------TAIAGSTSIAFRKLNAVINNKKD-----MEIVAQEAKMSGQ 91 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++DEVH L + + LL LE + + I SR F L+ L Sbjct: 92 VILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTP 151 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTD------QAIAS 227 E I+ LE L++EH ++ + +A++ A G +R AL+ + + A Sbjct: 152 ELIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESAD 211 Query: 228 GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G+ ++ + L G D + +++ ++ + + G Sbjct: 212 GEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGDL 271 Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 ++ I + + R+ IP Sbjct: 272 ESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLA 317 >UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D911_9ACTN Length = 378 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 124/365 (33%), Gaps = 37/365 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q HV + + ++ HAYLF G G+G + LAK L C G C C+ Sbjct: 18 QAHVCSFFKQAYAQRQLSHAYLFIGNYGLGISEALDELAKMLLCPHGGD-----ECACCK 72 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 I D+ + VE DLLD V AP + + K+ +I E L NA Sbjct: 73 RIMHKSHPDVHQFYPQGAQGYVVEQIHDLLDVVHRAPIQAKRKLIVIHEAQSLGASCANA 132 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN------ 192 LLKTLEEPP V F+L +T ++ T+ SRC ++ Q +E Sbjct: 133 LLKTLEEPPASVYFVLVSTSAAQVLQTVSSRCQHIPFTFINQAQAAKLVERAAASTPEQA 192 Query: 193 --EEHIAHEPRALQLLARAA-----------------EGSLRDALSLTDQAIASGDGQVS 233 +I P+A R++ + D + L D+ + Sbjct: 193 RWALYIKQSPKAAIDFLRSSSKMNIRSKIMHIFAIMPDADSWDLIELADELCVLIQIPLD 252 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + D D++ + A + V A + I E ++ LL A Sbjct: 253 QKTDEQ---QADFDRSQDFLSAGARKKMQAVHKRELSRAQQ-ISVEEIIDISASLLRD-A 307 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 M A LA + + ++++ ++ +E Sbjct: 308 MFFSEGAHAEIMNQDAVNICDCLAACASTDAMLATLAYVARAKQQMRAHVSAQLVLEAFF 367 Query: 354 LRALA 358 L Sbjct: 368 LNVHR 372 >UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZU9_9BACL Length = 452 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/308 (17%), Positives = 113/308 (36%), Gaps = 55/308 (17%) Query: 6 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP + + +GQEH++ L + ++ + L G G GKT++A +++ Sbjct: 32 LADRMRPTSLDEYIGQEHIVGPGKLLRRAIEADQVS-SILLYGPPGCGKTTLAHIISHHT 90 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRFK 121 E A V+D R++++ Q G Sbjct: 91 KAE-------------------------FVRLNAVDASVKDVREVIEKAQNDKAFYGTKT 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL- 178 + +DEVH + +ALL +E+ + F+ ATT+ + ++SR F L+ L Sbjct: 126 ILFLDEVHRFNSSRQDALLPAVEK--GTIIFIGATTENPFHYVNGALMSRSTLFQLEPLT 183 Query: 179 DVEQIRHQLEHILNEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 + + ++E + + AL +A A G +R AL+ + A + Sbjct: 184 KEHSLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMANGDIRRALNALELAAMTTPPQP 243 Query: 231 ----QVSTQAVSAMLGT--------LDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ + + D + +++ ++ V + G++ Sbjct: 244 DGTVHITLEVAEESIRRPLVKADESTQYDVLSAFHKSIRGSSDAAVFWFLYAVEKLGMDP 303 Query: 279 EALLVEML 286 + ++ Sbjct: 304 MTFIRRLI 311 >UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8D9_TOLAT Length = 319 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 108/295 (36%), Gaps = 30/295 (10%) Query: 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 86 + R+ HA+L G G+GK+++A A CE TPCG C C+ + Sbjct: 11 RFQQVFASKRLPHAFLLVGPAGIGKSALAVQWASLFLCEQPQQNTPCGKCHACQLSGKQT 70 Query: 87 FVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D D A V+ R L + +P GR KV +I + ++ + NALLKTLE Sbjct: 71 HPDWHVYGADDAKSIGVDIIRQLSAQLMNSPQLGRGKVAVILQAERMTEAAENALLKTLE 130 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP + +L KL TI+SRC + L+A + +Q L+ L I Sbjct: 131 EPPGNSLLILQAESAMKLLPTIVSRCQVWTLQA-EEQQALTWLQQQLPGREIT------P 183 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 L R +G+ L ++ G ++ ++A + Sbjct: 184 ALLRLNQGAPLRTLEYLNEG-----------------GEQQRLAVINALDA-YRQQPWTI 225 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 +L + + LL +Q A + LA+ Sbjct: 226 SSLTKCWVSA---MPVTFEWLSRLLLDALKLQQGVVMQQLPFADHPALLSFLAQR 277 >UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=Rhizobiales RepID=Q7CZ44_AGRT5 Length = 341 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/276 (25%), Positives = 110/276 (39%), Gaps = 25/276 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 PQ + G E LA G+ HHA L G G+GK ++A A + + Sbjct: 14 PQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLTHPDPASA 73 Query: 71 -----TPCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPA 116 P R+I G +L+ + S V++ R Sbjct: 74 PDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGHFFSQTSG 133 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G +++ +ID L+R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L Sbjct: 134 TGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLL 193 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST-- 234 L + L ++ I+ E L A++GS+ AL L + G + Sbjct: 194 PLSDAAMVQAL----DQLDISPEGEKRDALLTASKGSVAQALKLMN----YGGSDIVEAF 245 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 V + G + L E + + +G+ V+ E Sbjct: 246 AEVMSAEGPGARKRMHKLAEVLAQKDGDIVLGFFME 281 >UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI0_RHOVA Length = 455 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 49/333 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + + L + RP + DV+GQEH+L L ++ G + +F G G GKT++ARL+ Sbjct: 29 ASRPLPDRLRPASLGDVIGQEHLLGEGGPLRR-IADGEAPRSMIFWGPPGTGKTTVARLM 87 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AKG G E +A + V D R + D + G Sbjct: 88 AKG----------------------AGAH---FEQISAIFSGVADLRKVFDAAKDRQRFG 122 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + + +DE+H +R ++ L +E+ + + ATT+ +L +LSR + Sbjct: 123 QGTILFVDEIHRFNRSQQDSFLPFVED--GTIILIGATTENPSFELNGALLSRAKVLVFR 180 Query: 177 ALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG---Q 231 L + I L + + P A L A+G R AL+LT+ A+G Sbjct: 181 RLTDDNIEQLLARAESVLGKTLPLTPDARGALIGMADGDGRTALNLTEDVFATGRDPSHP 240 Query: 232 VSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 + T ++ ++ D +L +A+ ++ + + G L Sbjct: 241 IDTAELTEIVQRRAPLYDKNRDGHYDLISALHKAVRGSDPDAALYWFCRMIDGGEAPLYL 300 Query: 282 LVEMLGL-LHRIAMVQLSPAALGNDMAAIELRM 313 M+ + + I + + N + Sbjct: 301 ARRMVRMAVEDIGLADPNALVQANAAKDAYDFL 333 >UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actinobacteridae RepID=C8XD35_NAKMY Length = 494 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 107/319 (33%), Gaps = 59/319 (18%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+T +VVGQ+H+L L + G + L G G GKT++A L+A Sbjct: 40 HAPLAARMRPRTLDEVVGQQHLLGPGAPLRRLVQGG-APSSMLLYGPPGTGKTTLATLVA 98 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARG 118 G +A V++ R ++ G Sbjct: 99 -------------------------GSTGRFFAQLSAVSAGVKEVRAVIAEATTRLRRTG 133 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 V IDEVH SR ++LL +E+ + + +LSR L L+ L Sbjct: 134 EQTVLFIDEVHRFSRTQQDSLLGAVEDRTIVLVAATTENPFFSVVSPLLSRSLILQLQPL 193 Query: 179 DVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 I ++ + +E A L A G R AL+ + + S Sbjct: 194 TDTDISELIDRAVADERGLAGAFTLAEPARAHLVALAGGDARRALTALEASAESVRELDA 253 Query: 231 -----------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALIN 269 ++ AV + G D + ++++ ++ + + + Sbjct: 254 PDSDDDPAGVLEIDLDAVERAVNRAAVRYDRSGDQHYDVTSAFIKSIRGSDVDAALHYLA 313 Query: 270 EAAARGIEWEALLVEMLGL 288 G + + ++ Sbjct: 314 RMIEAGEDPRFIARRLMVH 332 >UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RHQ8_ARCPR Length = 499 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 52/340 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGR--IHH-AYLFSGTRGVGKTSIARLLAKGL 62 K+RP+T DVV + +L + + I L G GVGKTS+A LA Sbjct: 3 WVEKYRPKTLKDVVADKDILERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALANTF 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-------- 114 E ++E++A+ + + R ++ ++ Sbjct: 63 GWE------------------------VVELNASDQRSWQIIRRIVGEAAFSETISSEGE 98 Query: 115 ---PARGRFKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 GR K+ L+DEV +S+ +AL+K L+ P +L DP KL + Sbjct: 99 FLSSESGRLKLILLDEVDNISKKEDFGGESALIKLLKRKPRQ-PIILTANDPYKLSKELR 157 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 C K L +QI LE I E I + AL+L+A+ A G LR A++ QAIA Sbjct: 158 DLCEFVQFKRLRTDQIVKVLERICASEGIKADRNALRLIAQNAGGDLRAAINDL-QAIAE 216 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G ++ + V + + + +++ + + V + + E L Sbjct: 217 GRREIRAEDVV-VSKRMQETDVFKVMQKIFKRFDRTVYTDAMSLDESPEDLIVWIDENLP 275 Query: 287 ------GLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 LL ++ + LG R+ A + Sbjct: 276 LEYEGDELLRAYLVLSRADMFLGRVRRRGFYRLWRYATYL 315 >UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Methanosaeta thermophila PT RepID=RFCL_METTP Length = 467 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 106/290 (36%), Gaps = 38/290 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTALAN---GLSLGRIH-HAYLFSGTRGVGKTSIARLLAK 60 A K+RP+ ++G ++ L GR + G GVGKTS A LA Sbjct: 3 SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALAS 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 ++ D IE++A+ + E + + + GR Sbjct: 63 EMD------------------------WDYIELNASDQRTAEIIKSIAGPASQVSTFSGR 98 Query: 120 FKVYLIDEVHMLS----RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 ++ ++DE L R A+L+ ++ + V +L + + + C Sbjct: 99 RRLVILDEADNLHGTYDRGGAAAILRVIKNATQPV--ILIANEYYNIEKPLRDACRGVQF 156 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 +++ + I L I E I EP A+ +A + G LR A++ + A A G + + Sbjct: 157 RSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLE-AAARGLKHLRLE 215 Query: 236 AVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVE 284 V+ + +++++ + + + + + + E Sbjct: 216 DVATSERDV-KASIFRVLDSIFKGEDSRSALEATYQLDESPEDLIHWIDE 264 >UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacteria RepID=D2AWQ0_STRRD Length = 436 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 119/307 (38%), Gaps = 49/307 (15%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 ++ LA + RP+ +V+GQ H+L T L + + G G GKT++A ++A Sbjct: 16 HEPLAVRMRPRGLDEVIGQRHLLGPGTPLRRLVEAE-APMSLFLWGPPGTGKTTLAYVVA 74 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARG 118 G +A V++ R ++ + G Sbjct: 75 -------------------------GVTKRRFVEVSAVSAGVKEVRAAIEQARRELGMSG 109 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 R V +DEVH ++ +ALL +E V F+ ATT+ + +LSR L L+ Sbjct: 110 RQTVLFVDEVHRFNKAQQDALLPAVEN--RWVTFIGATTENPFFSVISPLLSRSLLLTLE 167 Query: 177 ALDVEQIRHQLEH-ILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 +L + IR LE + + + P A + L R A G R +L+ + A DG+ Sbjct: 168 SLSEDDIRMVLERAVADPRGLDGKAKLAPEAAEHLVRLAGGDARRSLTYLEAASLIADGE 227 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + V + G D +++M ++ + + + G + + Sbjct: 228 ITVEVVERAVDKAAVRYDRQGDQHYDVISGFIKSMRGSDADAALHYLARMVEAGEDPRFI 287 Query: 282 LVEMLGL 288 ++ Sbjct: 288 ARRIVIF 294 >UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Acetobacteraceae RepID=Q0BT78_GRABC Length = 342 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 112/273 (41%), Gaps = 31/273 (11%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + + G E LA+ + GR+HHA+L +G G+GK ++A A+ L + Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65 Query: 72 P------------CGVCDNCREIEQGRFVDL---------IEIDAASRTKVEDTRDLLDN 110 R + DL + V+D R++ Sbjct: 66 SQHEKKADSPLWLSPEHPVFRRVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREIASF 125 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + PA G ++V ++D L+RH+ NALLK LEEPP LL+ + P +L TI SRC Sbjct: 126 LHLTPAEGGWRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTIRSRC 185 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+AL+ ++ L +L + LLA AEG+ AL L A DG Sbjct: 186 RMLRLQALEAAPMQDVLATLLPD----LAAAERDLLAGLAEGAPGRALQL-----AKEDG 236 Query: 231 QVSTQAVSAMLGTLD-DDQALSLVEAMVEANGE 262 ++ +L L + + + + Sbjct: 237 LALSRLAEDILRAPPSASHRYDLADMLTKGDTA 269 >UniRef50_A2QW62 Function: WHIP of M. musculus is involved in aging control n=3 Tax=Aspergillus RepID=A2QW62_ASPNC Length = 513 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 102/303 (33%), Gaps = 48/303 (15%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+ F D+VGQ+ ++ L + + + + G G GKT+IAR+ Sbjct: 103 HAPLAEQVRPRCFDDIVGQKSLIGPNGTLRRLIEQDELPN-LILWGPPGSGKTTIARI-- 159 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 I + EI + + E D V A GR Sbjct: 160 ----------------------IGPMMRRKVYEISSLTTITTEY----RDIVTKATHDGR 193 Query: 120 FKVYLI-DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K + DE+H L+R + L + + + T++ +C F + Sbjct: 194 NKSIIFCDEIHRLTRPQQDIFLDAMRRNKITLIGATTENPSLNIHHTLVYKCRVFTVAKP 253 Query: 179 DVEQIRHQLEHILN-----EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-- 231 + L L + + LQ +A A+G R AL++ + A Sbjct: 254 TTTDLATILRRSLISQTHLKSSPLLDDEFLQYIAGFADGDSRTALNVLEIATDLCRRPNM 313 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 ++ + G D +L +++ ++ + + + G + Sbjct: 314 TKEKLKYSLTKSLLYDRSGDQHYDTISALHKSIRGSDPDAALYYLVRMLQSGENPLFIAR 373 Query: 284 EML 286 ++ Sbjct: 374 RLI 376 >UniRef50_Q7VR24 DNA polymerase III, delta prime subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VR24_BLOFL Length = 333 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 106/331 (32%), Gaps = 29/331 (8%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + + + + HHA L T+ G+ + +A+ L C+ C C +C + Sbjct: 10 IYNQILFSYDIKKGHHALLLYSTQNNGEDILINSIARWLICKNSFKIKYCNSCSDCYLMN 69 Query: 84 QGRFVDLIEID---AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G+ D ++D A V+ RD +D++ + K+ I + L+ + N LL Sbjct: 70 IGQHPDYYQLDLKYQAQSIGVDSIRDCIDSIYRFTQYSKSKIVFIQYIEYLTDEAVNMLL 129 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEPP++ F + +P+T+LSRC+++ + L + ++I Sbjct: 130 KILEEPPDNTYFFFRSRKIINIPLTLLSRCVKWVVTPPVESLGIEWLINNQKLDNILFLT 189 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 AL R GS +A + + L + + Sbjct: 190 TAL----RLNYGSPIEAKVMLQSDQWKAR--------------------VELCNHINDVI 225 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + ++ LL + + ++ Sbjct: 226 KNGNFLQLLPILKNKEHRYIFISWLITLLVDALKYRQGVKEKFFINLDQLQLILNISVYW 285 Query: 321 PPTDIQLYYQTLLIGRKELPY--APDRRMGV 349 + +I + + + Sbjct: 286 KVLSLHNQLSQWIILFYYFQRFDNINHELLL 316 >UniRef50_A9BKX0 Rfc2 n=1 Tax=Cryptophyta RepID=A9BKX0_9CRYP Length = 319 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 24/294 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP ++ + + + + + SG G GKTS LA+ + Sbjct: 7 EPWTFKYRPYLLKELSIHKSLKKKFILMTKKVILPN-IILSGPPGSGKTSGIFCLARKIF 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV---QYAPARGRF 120 + C ++ + VE R+ + + + Sbjct: 66 GKDFQKHVLC-------------------LNTSDNRGVEIIREKIKTFCQKKLKNENLKK 106 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE ++ + AL + +E + V+F L P K+ + SRC K + Sbjct: 107 KLVILDEADFMTITAQEALRRIMEIFSDKVRFALICNFPSKIIGPLQSRCAILRFKKIKE 166 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++L ILN E + + L+ G +R L++ Q I G ++ +A+ Sbjct: 167 TFLLNRLIFILNNEGVFFDIAGLEATIFLTNGDIRQILNM-SQIIVKTFGNLTQKAIKKF 225 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + L A N L+ + G + + +I + Sbjct: 226 CSLSNSTVFLEFFSAFSNKNVYFSQELLLDCINNGSNIIETIQRIFLFCKKIHI 279 >UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campylobacterales RepID=D1B0W0_SULD5 Length = 396 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 57/291 (19%), Positives = 113/291 (38%), Gaps = 41/291 (14%) Query: 10 WRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 +RP+ ++ GQ+H+ + L G + HA LF G GVGKT++AR++A L Sbjct: 9 FRPKVIEELSGQKHLSGENSPFRKLLKSGSMSHA-LFFGPAGVGKTTLARIVANTLQLP- 66 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 E+D A+ KVE+ R + + + + ID Sbjct: 67 -----------------------FYELD-ATSIKVEEIRKI---LSQHRGALQKPLIFID 99 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 E+H LS+ LL +E V L I SR + F L+++ + Sbjct: 100 EIHRLSKTQQEVLLLPMENHEAIVIGASTENPYFVLSSGIRSRMMLFEFYPLEMKDMEAI 159 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-------ASGDGQVSTQAVSA 239 LE + + + A + L R++ G R L+L + A+ + A+ Sbjct: 160 LERVHEKIEFQIDEEAREYLIRSSAGDSRSFLNLLEFALKVDLHVNMQTLKALRPSALKD 219 Query: 240 MLGT--LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + + + ++++++ ++ + + + G + + ++ L Sbjct: 220 GVSSDNTHYNLISAMIKSVRGSDVDAALYYLARLIDGGESPDFIARRLVIL 270 >UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MDV0_9PORP Length = 362 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 47/314 (14%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G + + A+ G++ HA L G +A A+ + C++ Sbjct: 1 MQFADIYGYQALKQQFAHLTHSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSPTDEDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---------------------------------- 98 CG C +C+++ D+I + + Sbjct: 61 CGACASCKKVAAIAHPDVIFVYPVVKAAQDETPTERYFDEWRTFLERSPYITDQDWLEVL 120 Query: 99 --------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 V + LL + G ++ +I + ++ + N LLK+LEEPP Sbjct: 121 EAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEPPAET 180 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L + +L TILSR +F L + ++R L H AL+ + Sbjct: 181 LFILVSAHSDRLLDTILSRVQRFELPPMTEAEMREAL----TAMHPELATDALEAMIPLV 236 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 +G+L DAL L D + + Q Q D + L E + +A E +A + Sbjct: 237 DGNLSDALRLLDSSASQDKLQELAQQWYDATLRADILRLKLLSEEVDKAGREGAVAFLKL 296 Query: 271 AAAR-GIEWEALLV 283 + G +W L Sbjct: 297 LMQQVGQQWHRALR 310 >UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0APP2_MARMM Length = 349 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 116/279 (41%), Gaps = 25/279 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA-RLLAKGLNCETGITA 70 P+ D+ G E A A GR+HHA++ +G RGVGK S+A R + L A Sbjct: 18 PRERYDLFGHEAAERAFATAWDSGRLHHAWMITGPRGVGKASLAWRAARRVLGARPMPEA 77 Query: 71 TPCGVC---DNCREIEQGRFVDLIE---------IDAASRTKVEDTRDLLDNVQYAPARG 118 P G C+ IE DL+ VE+ R + + G Sbjct: 78 GPLGTSAEDPVCKVIEAQATPDLLVLRRPWDDKRKRWRGEITVEEARRAPHFFEMSSGGG 137 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++V ++D ++ ++ NALLKTLEEPP+ L T P +LP TI SRC + L+A Sbjct: 138 GWRVCIVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRLALRAP 197 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 D++ LE A + A +R A G+ AL+L +G G V+ Sbjct: 198 DIDATAEWLEQTGG----AADTGAAMAASRLAGGAPGRALALI-----AGGGVELAADVN 248 Query: 239 AML---GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 ++ D L E + E + L E A Sbjct: 249 LLVDRGAAASDADIRKLAERLSLKGQEEMRDLFYEVLAN 287 >UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3368A Length = 317 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 37/262 (14%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++GQ T L + +I AYLFSG GVG+ AR K + + + Sbjct: 3 NFQHLIGQTQSTTLLKQIIIKNKIAPAYLFSGPTGVGRRLAARSFCKSIFSLSKVLQE-- 60 Query: 74 GVCDNCREIEQGRFVDLIEI-----------------------DAASRTKVEDTRDLLDN 110 I G DL I +++ + +++ R++ + Sbjct: 61 NQTTLEHRILNGNHPDLYWIEPTYQYKGKLFTIRQAQENGLKSNSSPQIRIDQIRNITNF 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + P V +I+ M++ + N LLKTLEE +L ++ L T++SRC Sbjct: 121 LSRPPLESIRSVVIIESAEMMTEAASNGLLKTLEEAKLAT-IILIVSNQNLLLPTLVSRC 179 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L + ++ L + E+I +E + + + ++GS A+ +Q Sbjct: 180 QIIPFYNLSEKDLKQVLRK-SDYENIINEEK----IIKLSQGSPGKAIGYWNQL------ 228 Query: 231 QVSTQAVSAMLGTLDDDQALSL 252 Q+ ++ L + SL Sbjct: 229 QLIPSEITDTLEKIPLSYLNSL 250 >UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=Streptococcus RepID=Q5M0Z8_STRT1 Length = 291 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 111/300 (37%), Gaps = 18/300 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 A+ Q + + + R+ HAYLFSG G +A LA+ C T P Sbjct: 1 MKLAEC--QRKLFEEFSQIIRENRLSHAYLFSGDFGS--LDMAIWLAQSRFCLTPEDGLP 56 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C CR I QG F D+ ++ + K + R L + G +V++I + + Sbjct: 57 CSHCRPCRLIAQGDFSDVKLVEPQGQIIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKM 116 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ N+LLK +EEP + L T D ++ TI SR F+ + LE +L Sbjct: 117 HVNAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSRAQLFYFPKN-----KAYLEDLL 171 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD--DDQA 249 E + ++LA A+ ALSL+ + + ++L D Sbjct: 172 QREGLLLT--QAKVLADFAK-DETQALSLSKDKKVLDVIDIVERFEQSLLANHDLLYLDV 228 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL---HRIAMVQLSPAALGNDM 306 L + + + ++ L L+ + + +S + Sbjct: 229 AKLAVQCSKKSEQEMVWAFLTYQLGKEIQNPQARRWLDLVFKAREMWLANVSFQNAMEYL 288 >UniRef50_D2RCC6 DNA polymerase III, delta' subunit family protein n=3 Tax=Bifidobacteriaceae RepID=D2RCC6_GARVA Length = 392 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 65/392 (16%), Positives = 135/392 (34%), Gaps = 59/392 (15%) Query: 15 FADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGL----NCETGI 68 + V+GQE V++ L N +I ++L G+ G G +AR A L + E Sbjct: 4 WDSVIGQEQVVSRLRNIACADASKIAQSWLICGSAGFGSAQVARAFAAALESPDHGEGSD 63 Query: 69 TATPCGV-CDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLID 126 + G +E+ G D+ + T ++D R+ + + P+ +++ +I+ Sbjct: 64 GISGEGELSKTTKEVLAGSHPDVHTLATKGVTLSIDDVREAIGISEQMPSTAPWRIIIIE 123 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 +V + S N LLK +EEP EH +LL + + TI SR L + + I Sbjct: 124 DVDRMLERSTNVLLKEIEEPSEHTIWLLCASSVMDVLPTIRSRTQLVQLATPNEQSIAEY 183 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L + + AR ++G++ A A + V+ +L D Sbjct: 184 LTK-----KTDADNKLASRAARLSQGNIATAFIYASDERALSRRD---ELVAGLLRMHDA 235 Query: 247 DQALSLVEAMVEANGERVMALINE-AAARGIEWEAL------------------------ 281 A+ L +++ + + + E+ + Sbjct: 236 ADAIMLAAMLIDDAKAQAEDEVQRNVEDQQKEFRRINGLGDEDRIPPKLRANYNAIGKKD 295 Query: 282 -----------------LVEMLGLLHRIAMV-QLSPAALGNDMAAIELRMRELARTIPPT 323 L + + + +V + + + R+ +LA+++ + Sbjct: 296 DVKRKVTRVSRDVLCRSLDAIDSVYRDVLVVINDAQKSSPIINQEYKSRIVQLAQSMTAS 355 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ R+ L + + E Sbjct: 356 SALDCVDSIATARRRLSRNGNATLVFEALFCS 387 >UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K0_FLAB3 Length = 442 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 124/311 (39%), Gaps = 52/311 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA + RP+T +V GQEH+ + L + ++ +F G G GKT+IA ++ Sbjct: 20 SNTPLAEQMRPKTLDEVRGQEHLTGEKGTVRKMLENDTL-NSLIFWGPPGTGKTTIAEII 78 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-AR 117 ++ + R+ + A + V+D R++++ + Sbjct: 79 SEQ----------------SGRKFFKLS---------AVSSGVKDVREVIEEAKKQNLFS 113 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHL 175 G+ + IDE+H ++ ++LL +E+ + + ATT+ ++ +LSR + L Sbjct: 114 GKSPILFIDEIHRFNKSQQDSLLHAVEK--GWIVLIGATTENPSFEVVSALLSRSQVYVL 171 Query: 176 KALDVEQIRHQ----LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI----AS 227 K+L E++ L++ + + + + G R ++ + + S Sbjct: 172 KSLSYEKLEELAELSLKNYNASHGTEFRIKDKEAFIQYSGGDARKLINSVENVLNNFKNS 231 Query: 228 GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++S V +L G D + +++M ++ + + G + Sbjct: 232 DKKEISNADVLEVLQETMALYDKNGEQHYDIISAFIKSMRGSDPNGAVYWLARMLVGGED 291 Query: 278 WEALLVEMLGL 288 + + ML L Sbjct: 292 VKFIARRMLIL 302 >UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MFE6_CANTT Length = 698 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 115/328 (35%), Gaps = 68/328 (20%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + LA + RP+T D GQE +L AL N + I ++L G G+GKTS+AR++ Sbjct: 158 ASIPLAHRLRPKTLDDFFGQEKLLGKDGALRNMIQSDIIP-SFLLWGVPGIGKTSLARII 216 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK C+ +E+ L + G Sbjct: 217 AKNSRCK------------------------FVELSGIDSNAKNLKEVFLQAENHKKLTG 252 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DE+H ++ + LL +E+ V L +LSR F ++ L Sbjct: 253 QRTILFLDEIHRFNKAVQDLLLPVIEKGIVTVIGATTENPSFNLNNALLSRVHTFVMEPL 312 Query: 179 DVEQIRHQLEHILNEEH-----------IAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 + E + L L E + I+ + A +A + G R AL++ + A Sbjct: 313 NTESLIKILTRALFEVNRIRKKLYGFHYISLQKDAYHYIANLSMGDSRVALNILETLNAY 372 Query: 228 GDG-----------------QVSTQAVSAML------------GTLDDDQALSLVEAMVE 258 +VS + +L G D + +++ Sbjct: 373 LSADKFKIDNNDTSPKQGVIKVSADLLKPLLKTRNFHQMYDRNGDSHYDIISAFHKSIRG 432 Query: 259 ANGERVMALINEAAARGIEWEALLVEML 286 ++ M + + + G + ++ M+ Sbjct: 433 SDPNAAMFYLVKMLSGGEDPMFIMRRMI 460 >UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Euryarchaeota RepID=C6A0M4_THESM Length = 766 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 5/242 (2%) Query: 95 AASRTKVEDTRD-LLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 + + R+ + + + P G FK+ +DE L++ + AL +T+E +V+F Sbjct: 523 NSDERGINVIREKVKEFARTKPIGGVSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRF 582 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 +L+ K+ I SRC F + L E + +L++I E + LQ + AEG Sbjct: 583 ILSCNYSSKIIEPIQSRCAIFRFRPLKDEDVARRLKYIAENEGLELTEEGLQAILYVAEG 642 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-A 271 LR A+++ QA A+ D +++ + V + + ++ +E N + + E Sbjct: 643 DLRRAINVL-QAAAALDTRITDENVFLVASRARPEDVREMMLLALEGNFLKARDKLREIL 701 Query: 272 AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQ 330 +G+ E +L++M + + + + AL + + R+ E + I + + Sbjct: 702 LKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVEGSNEMIQLEALLAQFT 761 Query: 331 TL 332 L Sbjct: 762 LL 763 Score = 83.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ D+VGQ+H++ L + + + H LF+G G GKT+ + LA+ L Sbjct: 16 KPWVEKYRPERLDDIVGQDHIVKRLKHYVKTASMPH-LLFAGPPGTGKTTSSLALARELF 74 Query: 64 CET 66 E Sbjct: 75 GEH 77 >UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepID=Q1QXX6_CHRSD Length = 469 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 120/309 (38%), Gaps = 51/309 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ D VGQE ++ L G + + + G GVGKT++A Sbjct: 38 PLAYRMRPRRLDDYVGQEALVGPGKPLRRMAESGAV-RSMILWGPPGVGKTTLA------ 90 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +I ++E +A V+D R ++ + RG+ Sbjct: 91 -------------------DILADASGAMLERLSAVMAGVKDIRAAVERAREGQVRGQPT 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H L++ +ALL +E + ++ +LSR + L+ L+ E Sbjct: 132 LLFLDEIHRLNKSQQDALLPHVESGLLTLIGATTENPSFEVNSALLSRARVYVLRKLETE 191 Query: 182 QIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-----GD 229 + L L + HI + L+ LAR+A G R AL L + A G Sbjct: 192 DLLRVLHQALADTERGLGKRHIEADEGVLETLARSASGDARRALGLLETACDFAEPTEGG 251 Query: 230 GQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 +++ QA+ +LG D ++ +++ + + + I + G + Sbjct: 252 ERLTLQALHEVLGHQASAFDKQGDHYYDLLSAIHKSIRSSRPDAALLYIAQFTQGGGDPL 311 Query: 280 ALLVEMLGL 288 ++ + + Sbjct: 312 DVVRRLAAI 320 >UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrobia RepID=B5JJN9_9BACT Length = 496 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 54/309 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA + RP++ ++VVGQEH+L L + + LF G G GKTS+A +A Sbjct: 74 QPLAARLRPRSLSEVVGQEHILAPGKLLPRLVEANTFG-SLLFYGPPGCGKTSMAEAIA- 131 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 G A + V + R++L + + Sbjct: 132 ------------------------GETKSRFVRINAVMSNVAELREILGIARR--MEDKD 165 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP--QKLPVTILSRCLQFHLKAL 178 V IDE+H ++ + LL +E +++ + ATT + +LSR F L Sbjct: 166 TVLFIDEIHRFNKSQQDLLLPDVE--AGNIRLIGATTHNPGFYVNAPLLSRSHLFRLNPH 223 Query: 179 DVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGD 229 DV+ + L L +E I L+ LA+ +G LR L+ + Sbjct: 224 DVDTVAATLAKALTDEERGLGERKITAVAGVLEGLAKLCDGDLRRGLNALEVIAMGLEEG 283 Query: 230 GQVSTQAV----------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 G+++ ++V D + +++M + + + + + G + Sbjct: 284 GEITEESVGVFASERQIRYDADEDEHYDTISAFIKSMRGGSPDGALYWLAKMLKGGEDPR 343 Query: 280 ALLVEMLGL 288 + ++ Sbjct: 344 FIARRLVVF 352 >UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax=Vibrio RepID=A5F6P8_VIBC3 Length = 324 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 127/322 (39%), Gaps = 23/322 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V GL+ G+I A L + GVG S+ L+A+ L C + + PCG C +C ++ Sbjct: 14 VWQPWQAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQ-SEPCGFCHSCGLMQ 72 Query: 84 QGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D + VE R + Q + +++ +I+ ++ S NALL Sbjct: 73 SGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALL 132 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP + F+L T+ + L TI+SRC + L A + L+ + I Sbjct: 133 KTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWLKG----QGITTPA 188 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA-LSLVEAMVEA 259 AL L A S + + A ++ +Q ++A+ G ++ ++L++A Sbjct: 189 YALHLCAD----SPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQLKCIALIDA---- 240 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLH---RIAMVQLSPAALGNDMAAIELRMREL 316 + + + + + + + + A+ + + A R+ E Sbjct: 241 DLTTHLYWVWCVL---TDAQKIHFGVQQDYYPPASAALAGRFTYSKLHVQTASLERLMEQ 297 Query: 317 ARTIPPTDIQLYYQTLLIGRKE 338 + +L L + Sbjct: 298 LNQFSGLNTELLLLQWLYQFSD 319 >UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7J3_PHYIN Length = 499 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 110/311 (35%), Gaps = 51/311 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA + RP D+VGQE +L + L+ + R+ + + G G GKT++A ++ Sbjct: 82 SAVPLAERMRPTDLNDLVGQEELLGPGSLLSTLIEADRVPN-MILWGPPGCGKTTLAHVI 140 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPAR 117 +K C+ + + +K D +D +D + Sbjct: 141 SKKTGCK-------------------------FISLSGATSKAGDMKDAVDRARGERKMF 175 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R + +DE+H ++ + L +E+ + ++ +LSRC + LK Sbjct: 176 RRRTIVFVDEIHRFNKIQQDFFLPPVEDGTITLIGATTENPSFEVNNALLSRCRVYSLKK 235 Query: 178 LDVEQIRHQLEHIL---NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD----- 229 E I L L ++ E A++ L G R AL+ + AI + Sbjct: 236 HTPESIERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEMAIQTAPIDPDK 295 Query: 230 --GQVSTQAVSAML-----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 +VS V + D +L +++ ++ + + G Sbjct: 296 RVLRVSAIHVQHCFAHRQTLFYDRNADMHYDVISALHKSIRGSDENATLYWLARMLEGGE 355 Query: 277 EWEALLVEMLG 287 + ++ Sbjct: 356 NPLYVARRLIR 366 >UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desulfovibrionales RepID=C6BV47_DESAD Length = 420 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 97/293 (33%), Gaps = 45/293 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA + RP+ + GQ H+ + R+ LF G G GK+++A LLAK Sbjct: 9 QPLADRIRPKKIDEFFGQNHIRERVEAFERSKRLPSLLLF-GPPGCGKSTLAMLLAKS-- 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 GR I + L + + Sbjct: 66 --------------------TGRHFMRISAPESG------ITALRKQLA------GMDIL 93 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE+H S+ + L LE + + +LSR L++L + Sbjct: 94 ILDELHRFSKAQQDFFLPILESGEITLLATTTENPSFSVTRQLLSRLHVLRLRSLGKTDL 153 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-- 241 E I +L L+ A G R L+L + + + + +L Sbjct: 154 LAICNRACEELEIELSEDSLNLITSMAGGDGRSLLNLLEYTSQLPAEKREAENLRKILPE 213 Query: 242 --------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 G + A +L++++ ++ + + + G + + + ++ Sbjct: 214 TVIRGDRDGDSHYELASALIKSIRGSDPDAALYYLGCLIESGEDPKFITRRLI 266 >UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3H8_9GAMM Length = 329 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 118/342 (34%), Gaps = 47/342 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L+ G + HA + +G G GK+ +A LA+ L C CG C +C Sbjct: 16 QGTTWARFNQQLADGNLPHALVLAGLPGSGKSRLALALARLLLCHAPNGGLNCGKCHSCE 75 Query: 81 EIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D + + K++ R+++ + G K+ ++ ++ ++ N Sbjct: 76 MSAAGSHGDFRWLQPEEKSRAIKIDQVREVVTFTTKTASFGDRKIVVLAPADAMNTNAAN 135 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK+LEEP +L LP T+ SRC + A ++ R L+ Sbjct: 136 GLLKSLEEPSPGTFLILVCDQLHGLPATVRSRCQLIKVPAPSLDSSRAWLDQ-------- 187 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 A G ++ L D A AM D ++ +++ Sbjct: 188 ------------ATGDSDESARLLDLADG------MPMLAEAMYQRADGEKLIAI----- 224 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 A AA + + A+ Q++ A G+ A + + Sbjct: 225 -------RAACRGLAAGKLSANQAATMLAEAPMDEALEQMARTARGSIKALDKENLNGQT 277 Query: 318 RTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRAL 357 + + + ++ + P+R++ E+ L + Sbjct: 278 GRC----LYEFLDEVGKIQRAVRGGANPNRQLLTEVLLEKLQ 315 >UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6BHR7_DEBHA Length = 786 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 121/347 (34%), Gaps = 82/347 (23%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + LA++ RP++ + GQE ++ L N + +I +++ G GVGKTS+AR++ Sbjct: 190 AELPLAQRLRPKSLDEYYGQEKLVGENGILKNIIKSDQIP-SFILWGVPGVGKTSLARII 248 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 ++ NC+ + G RE+ ++ R L G Sbjct: 249 SQTSNCKFLEVSGAEGNAKRLREVFTM---------------ADNERRL---------TG 284 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DE+H ++ + LL +E+ V L +LSR F ++ L Sbjct: 285 RKTILFLDEIHRFNKAVQDLLLPVIEKGIVTVIGATTENPSFTLNNALLSRMHTFIMEPL 344 Query: 179 DVEQIRHQLEHILNEEH-----------IAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 E I + L + IA + A+ +A + G R AL++ + A Sbjct: 345 LKEDIVKIINRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSRVALNILESINAY 404 Query: 228 --------------GDGQV-----------------------STQAVSAMLGTLDDDQAL 250 G+ + + Q + G D Sbjct: 405 LSSVQYSRFSGYEEGEKAIQIPKTLGVIKVCLQNLKPLLETRNYQKMYDKQGESHYDTIS 464 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL------LHR 291 + +++ ++ + + + + G + + M+ + L Sbjct: 465 AFHKSVRGSDADAAVFYLVKMLVGGEDPLFIARRMIVIASEDVGLRD 511 >UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB Length = 437 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 137/435 (31%), Gaps = 60/435 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA RP++ +VVGQ+ + L ++ ++ + + G GVGKTSIAR + + Sbjct: 14 QPLAAALRPRSLDEVVGQKTLTAKGSVLRRRIAANQLG-SIVLYGPPGVGKTSIARAVGE 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN E A+R V+D R L D + P Sbjct: 73 MLNKEFKQ-------------------------LHATRAGVKDIRQLADEARIRPI---- 103 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DEVH S + LL EE LP ++SR L+ + + Sbjct: 104 -LIFVDEVHRFSATQADDLLSICEEGTADFIGATTQNPYTALPKALVSRSTILKLEPIAI 162 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----Q 231 E + L L + P L+++A + G R AL+ + + Sbjct: 163 EDMEAVLARGLEHLAEMGIEVVLAPEQLRIIAGRSGGDARSALTTLESLAIGHGDSGSVK 222 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 V+ + + G D + +++M + E V+ + G + + Sbjct: 223 VTDDMLEEVYRAAPVNHDRSGDQHYDIISAFIKSMRGGDPEAVLYWLARLIHGGEDPRFI 282 Query: 282 LVE-MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 M+ + + + A + P I L + L + R Sbjct: 283 ARRIMIQASEDVGLADNTALQTAVAAAQAVEMI-----GYPEARIILAHAALHVTRAPKS 337 Query: 341 YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + + +PL + Q + +P P Sbjct: 338 GSANHGISA-ALSAVGSEPPLPVPLHLRDAHYQGAEQLGHGGYRSPHNDPRGWVDQTYAP 396 Query: 401 PTVPLPETTSQVLAA 415 P S+ A Sbjct: 397 GMQPGRFYQSEAREA 411 >UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=Methylophilaceae RepID=C6XDK0_METSD Length = 340 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 121/363 (33%), Gaps = 56/363 (15%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 Q V L + HA L G G+GK A+ L+K L C+ CGVC +C Sbjct: 11 QHAVWAGL--IAQRKTLPHAMLLRGPAGIGKLQFAQALSKALLCQQPQADGHACGVCASC 68 Query: 80 REIEQGRFVDL----IEIDAAS--------------RTKVEDTRDLLDNVQYAPA-RGRF 120 QG D E D A + V R+L ++ + Sbjct: 69 GWFAQGSHPDFRLLAPEQDQADEDAPAPAKPTTKKTQISVAQVRELGGFLELSSHHNDGV 128 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ LI L+ S NALLK LEEPP V FLL PQ+L TI SRC + + D+ Sbjct: 129 RIALICPAEGLNVASANALLKMLEEPPPGVVFLLVAHQPQRLLPTITSRCRKVDMPVPDM 188 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L ++ A GS A + G + + A Sbjct: 189 QGALSWLN--------GQGVDQAEVRLAYAGGSPMAARDQAE-------GSKPLELILAQ 233 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L A SL + M + + L+ + + + Sbjct: 234 LARGAGADAYSLATMLNALGMAEAMRV-----------------LQKWLYDLLACRFAVQ 276 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ LA+++ + + L + + + + +E +L+ + Sbjct: 277 AR--YHILHNAALQALAKSVDLAQMLELQRKLDDAYRSATHPLNNELQLESLMLQYVQLF 334 Query: 361 PRM 363 Sbjct: 335 SAK 337 >UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinomonas sp. MED121 RepID=A3YHR7_9GAMM Length = 322 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 10/261 (3%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 + + HA L G G G+ +A +A + C+ + CG C +CR G D Sbjct: 25 ANQALSHALLLMGKDGGGQHLLATQIAYDILCDQKQLNSACGECHSCRLNHAGTHPDYHL 84 Query: 93 ID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 +D KV+ R ++ V +P KV ++ + ++ ++ NA+LK LEEPP Sbjct: 85 LDGQEGTIKVDQIRQIITKVATSPQVSHAKVVILAQAASMNINAANAVLKALEEPPSGTY 144 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE------HILNEEHIAHEPRALQL 205 F+L +L T+ SRCL +L QI + + + + +P L Sbjct: 145 FILTADASSQLIATVRSRCLLINLPEPSSAQIEEWFSGLDLEDDVADIQWVTKQPFTLYQ 204 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL-DDDQALSLVEAMVEANGERV 264 LA++ G + + G++S V + L + D + + Sbjct: 205 LAKS--GRSLLYKDVPENIDKYLQGEMSADLVLSKLDSKNSADFLFAYSALFHQCICYST 262 Query: 265 MALINEAAARGIEWEALLVEM 285 A + + + LL + Sbjct: 263 GAYVPNLSQIQSTLDRLLNRL 283 >UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZZ0_DICTD Length = 431 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 116/313 (37%), Gaps = 51/313 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 SY+ L+ + RP+T + +G E ++ + L ++ G + + + G G GKT+++ LL Sbjct: 13 SYEPLSFRMRPRTLEEFLGAEDIIGEKSFLRKAINKGYLP-SLIIYGPPGSGKTTLSVLL 71 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK +N E IE++AA E L + Sbjct: 72 AKAINAE------------------------FIELNAAIVGVQELKEALQKAKRNLELYN 107 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + V +DE+H ++ + LL +E + L T+LSRC LK L Sbjct: 108 KRTVLFLDEIHHFNKLQQDVLLPFVERGIMILIGATTENPFFSLNTTLLSRCRLVELKPL 167 Query: 179 DVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---- 227 E I ++ L E + A++ + R A G R AL+ + A Sbjct: 168 SKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFANGDARIALNTLELASFMVAPS 227 Query: 228 --GDGQVSTQAVSAMLG----------TLDDDQALSLVEAMVEANGERVMALINEAAARG 275 G ++ V ++G + ++++ ++ + + + + G Sbjct: 228 ENGKLIITRNIVKEVIGKRIFRYDQRGDEHYHTISAFIKSIRGSDPDAALYYLAKMLLSG 287 Query: 276 IEWEALLVEMLGL 288 + + ++ Sbjct: 288 EDPRFIARRLIIH 300 >UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9I1_NOSCE Length = 352 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 115/304 (37%), Gaps = 22/304 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K++P+ F + +++ L I H +F G G GK IA L K L + Sbjct: 3 WLEKYKPRDFNSMTDHTEIISILQKYNIHN-IPH-LIFHGKSGSGKKLIAYNLIKHLFGQ 60 Query: 66 TG-ITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDT---RDLLDNVQYAPARGR 119 V R IE + IEI + + + + Q P Sbjct: 61 ISVPNVRTSEVKAGSRMIEVNFLEANEFIEISPSDYNFQDKVIIQSIIKEMAQSRPVMSF 120 Query: 120 F--------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 F K +I H LS + AL +T+E E + +L + K+ I SRC+ Sbjct: 121 FSTKKTPSIKFVIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIEPIRSRCV 180 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 ++ ++I++ +++I+ E+I + ++ + + ++G++R AL L + + Sbjct: 181 FVRIRGFKPQEIKNHIKNIVTAENININEQNIEQIIKISDGNMRRALGLLEILYLKHSEE 240 Query: 232 VSTQAVSAMLGTLDD-----DQALSLVEAMVEAN-GERVMALINEAAARGIEWEALLVEM 285 V+ + + + D+ +LV + V + I +L+E+ Sbjct: 241 VNKRLKLDLNHVKLEWEVVMDEISALVRRSHKTETIIEVRKKLYVLINSCITAHCILMEL 300 Query: 286 LGLL 289 Sbjct: 301 YKRF 304 >UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Thermotogaceae RepID=A6LJD0_THEM4 Length = 410 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 131/360 (36%), Gaps = 57/360 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS L+ RP+ F + +GQEH+ + + G + A F G G GKTS + Sbjct: 1 MSG--LSEILRPKGFEEFIGQEHLFGEKGLIRLAIESGNLFSAV-FYGPPGCGKTSTLEI 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + K ++ +AA + ++ + +LD Q + Sbjct: 58 IRK------------------------KTDFEIYHFNAAVTSTID-VKKVLDYAQK--VK 90 Query: 118 GRFKVYL-IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP-VTILSRCLQFHL 175 G K+ + +DE+H ++ + L +E +++ T +P K+ +LSR Sbjct: 91 GLKKMLIFVDEIHRFNKKQQDIFLPGIER-GDYIFIGATTENPFKMINPALLSRIKVIAF 149 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDGQV 232 K L V +I+ LE ++ ++I + + R ++G R A+++ D + ++ Sbjct: 150 KKLKVFEIKKLLERAISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDMAKALGKEI 209 Query: 233 STQAVSAMLG---------TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + + G + A + ++++ ++ + + + G + + Sbjct: 210 VDDEIVTLYGGEVKMVYTSKEHYELASAFIKSIRGSDPDAALYYMARMLEVGEDPRFIAR 269 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + L + +G L A+ + + L L AP Sbjct: 270 RLAIL---------ASEDVGLADPMAILIAIATAQAVELVGLPECVLNLSECVIYLSLAP 320 >UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID=B2THM3_CLOBB Length = 428 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 68/385 (17%), Positives = 144/385 (37%), Gaps = 62/385 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA RP D VGQ H+L T L N + +I + +F G G GKT++A + Sbjct: 1 MS--PLADLMRPSKIEDFVGQRHILGENTPLYNLIKSKKICNC-IFYGPPGTGKTTLANI 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +AK ++ + A+ V+D +++ + + Sbjct: 58 MAKYVDKK-------------------------FYKLNATTASVKDIQNITNELDNLLNY 92 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V IDE+ ++ +LL+ +E+ + + I+SRC F + Sbjct: 93 AGV-VLYIDELQHFNKKQQQSLLEFIEDGRITLIASTTENPYFVIHKAIISRCNIFAFEP 151 Query: 178 LDVEQIRHQLEHILNE---EHIA--HEPRALQLLARAAEGSLRDALSLTDQAIASG---D 229 L + I LE L++ E I + AL+ +A ++G R A ++ + +I S Sbjct: 152 LIISDIIVGLEKSLDKLINEGIEVTYSNEALKYIAEISQGDYRKAYNILELSINSQMTLH 211 Query: 230 GQVSTQAVSAM---------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 ++S + + G + +L +++ ++ + + + G Sbjct: 212 KEISVDYIEKLGQSNMRADNSGDEFYNLLSALQKSIRGSDSDAAIHYLARLIKGG----- 266 Query: 281 LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTDIQLYYQTLLIGRK 337 + ++ RI+++ +G + +LA + + ++ L+I Sbjct: 267 ---NIAAIIRRISVI--VAEDIGLAHPNALTVVNSGLDLAMKVGFPEARIVLAELVIYLA 321 Query: 338 ELPYAPDRRMGVEMTLLRALAFHPR 362 LP + + + + + + Sbjct: 322 TLPKSNSAYLAINSAMNDLESINFG 346 >UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1KXC3_CLOBM Length = 416 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 151/423 (35%), Gaps = 64/423 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ D VGQ+H+L L N + I ++ +F G G GKT++A ++A Sbjct: 2 RPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNS-IFYGPPGTGKTTLANIMAN 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 ++ + A+ ++D +++ ++ Sbjct: 61 YVDKK-------------------------FYRLNATTASIKDIQEITSSINSLLNYSGV 95 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V IDE+ ++ ALL+ +E+ V + +TT+ + ILSRC F K L Sbjct: 96 -VLYIDELQHFTKKQQQALLEFIED--GRVILIASTTENPYFVIHKAILSRCNIFQFKPL 152 Query: 179 DVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 + E I LE +N+ +I + +L+ + +G R A ++ + A+ S G Sbjct: 153 NREDIILGLEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNI 212 Query: 231 QVSTQAVS---------AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 +++ + G + + +++ ++ + + + G Sbjct: 213 EITLDYIESLAQSNIRADATGDEYYNILSAFQKSIRGSDADAAVHYLARLIKSG------ 266 Query: 282 LVEMLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTDIQLYYQTLLIGRKE 338 ++ + R+++ + +G + ELA + + Q+ + I Sbjct: 267 --DITSITRRLSV--MVAEDIGLAYPNALTIVNSGIELALKVGFPEAQIILSEITIYLAT 322 Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 LP + + ++ + + + + A + + Sbjct: 323 LPKSNSAYIAIKNAMRDLESVNFGDVPDYLKDSHYHGAKNLGVEGYKYPHDFNNHYVSQE 382 Query: 399 QAP 401 P Sbjct: 383 YLP 385 >UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URT3_9AQUI Length = 315 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 101/305 (33%), Gaps = 67/305 (21%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V L R LF G GVGKT+ A A+G C CG C +C Sbjct: 6 QSAVRELLERIQKEKRYPGGLLFYGLSGVGKTTAALDFARGALCLEEKEWG-CGSCSSCL 64 Query: 81 EIEQ-----------------------------GRFVDL-IEIDAASRTKVEDTRDLLDN 110 ++ G D +++ R + D Sbjct: 65 HYDRVAEDILSGKWEGISLYDESDGKKILKYLSGEHPDFIYVPPYGGSLRIDQIRAVKDF 124 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 PA KV ++++ H ++R + NALLK LEEPP F+L + +L TI+SR Sbjct: 125 AYMRPALSHRKVVVLEDSHTMTREAGNALLKVLEEPPSDTLFILISESKDQLLPTIVSRT 184 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 Q L+ E L EE+ + L R + GS A + Sbjct: 185 YQVEFHPLEEEVFYSLL----GEEN--------EELYRVSGGSYSLAKLI---------- 222 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR-GIEWEALLVEMLGLL 289 D + L +V+ + + V + + + E L + L Sbjct: 223 -------------KDRGEVLKMVDDFLSLKPDTVYQVAIKLDKSEPEDRELFLELLEDRL 269 Query: 290 HRIAM 294 + + Sbjct: 270 RKTFL 274 >UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase interacting protein n=1 Tax=Tribolium castaneum RepID=UPI0000D57862 Length = 494 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 115/313 (36%), Gaps = 53/313 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA++ +P+ D +GQ HVL T L L G I + L G G GKTS++ ++ Sbjct: 93 PLAKQLQPKCLDDFMGQSHVLGENTVLRTLLEKGDIPNMVL-WGPPGCGKTSLSGVIQG- 150 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 C++ T A+ V+D ++++ + G Sbjct: 151 -ICKSNPTKL------------------KFVSLCAATAGVKDVQNIVSAAKLQQKFGCRT 191 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALD 179 V +DE+H ++ + L +E+ + + ATT+ + +LSRC L+ LD Sbjct: 192 VLFMDEIHRFNKKQQDIFLLHVEK--GDIILVGATTENPSFTVNSALLSRCRVIVLQKLD 249 Query: 180 VEQIRHQLEHILNEEHIAHEP------------RALQLLARAAEGSLRDALSLTDQAIAS 227 + + LE ++ AL+ LA ++G R AL + Sbjct: 250 PDCLYQILERGARNFNVEVVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQY 309 Query: 228 GDGQ---VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 + + V+ + + + G + ++ +++ ++ + Sbjct: 310 NEDKNKVVTIEDIKEKIKKSHLLYDRKGEEHYNVISAMHKSIRGSDPNAALYWTTRMIVS 369 Query: 275 GIEWEALLVEMLG 287 G + + M+ Sbjct: 370 GEDPLYIARRMVR 382 >UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C1AD Length = 453 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 65/381 (17%), Positives = 114/381 (29%), Gaps = 65/381 (17%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + HA+LF+G G G++ A A L C CG C+ CR G D+ + Sbjct: 70 MTHAWLFTGPAGSGRSVTATAFAAALLCTRHDNPG-CGECEGCRTALAGTHGDIKIVRPE 128 Query: 97 SRT-KVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 V RD L P +V +I++ L+ + NALLK +EEPP ++ Sbjct: 129 GTIISVATVRDELRPWAYKMPTTADCRVLIIEDADRLNESASNALLKVVEEPPLRTVIIM 188 Query: 155 A--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 TT+ + VT+ SRC ++ ++ + + L E A + G Sbjct: 189 CAPTTNAEDFSVTLRSRCRHVYVPTPHIDDVANLLR----AERPELTDEQAVWAATVSNG 244 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTL-DDDQALSLVEAM--------------- 256 + A + + V A+ A L + Sbjct: 245 HIGRARGFVSDEGSRAWRGKALDFVEAVFDPAKSYLAARELANEVAGEVKRRMEPLEAEE 304 Query: 257 ------------VEANGERVMALINEAAARGIEWEAL-------------LVEMLGLLHR 291 + + + + L +++GL Sbjct: 305 LENLERSLGVGASGKGAQAALRGSKGVIKELEDNQKRRRRRAESDLIDLSLTDIMGLYRD 364 Query: 292 IAMVQLSPA---------------ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 ++ A+ ELAR +PP I + R Sbjct: 365 ALVLAFGAERAGSASGADSEFGNGAVYLINPDRRRTATELARRLPPEAILASIDAVTEVR 424 Query: 337 KELPYAPDRRMGVEMTLLRAL 357 L A + ++ + + Sbjct: 425 GMLVTAVKLTVLMDELMAKLQ 445 >UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6Q7_9ACTN Length = 454 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 111/321 (34%), Gaps = 65/321 (20%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP + + VGQ+ + + L + + + + G G GKT++A + Sbjct: 23 PLAVRMRPNSLDEYVGQQKAVGKGSWLRAAIEHDVLS-SVILYGPAGTGKTTLAHI---- 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 I + +E+ A V+D R ++D + R Sbjct: 78 --------------------IANHTKSEFVEVS-AVTGTVKDLRRVIDEAKTRLNTYDRR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 + IDE+H S+ +ALL +E V + ATT+ ++ +LSR L+ L Sbjct: 117 TILFIDEIHRFSKSQQDALLHAVEN--RTVIMIGATTENPYFEVNSALLSRGRVVELEHL 174 Query: 179 DVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQA--------- 224 E I +E L + + + + A G R AL+ + A Sbjct: 175 KDEDIATLIERALEAPQGLNGKFSADEDTAKTICTLAAGDARSALTTLELASEIAVTRPD 234 Query: 225 -------IASGDGQVSTQAVS----------AMLGTLDDDQALSLVEAMVEANGERVMAL 267 A ++ V G + D + +++M ++ + + Sbjct: 235 TEGTPAPAAGERYPITVDDVKIANPRRGFTYDKNGDMHYDIISAFIKSMRGSDPDATVYW 294 Query: 268 INEAAARGIEWEALLVEMLGL 288 + G + + + ++ Sbjct: 295 LARMIDAGEDPKFIARRIMIH 315 >UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIN0_THIDA Length = 327 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 123/350 (35%), Gaps = 47/350 (13%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCR 80 E V L + R A L +G RGVGK+++A A+ L CE + CGVC C Sbjct: 9 EPVWQRL--LATRSRPAQALLLAGPRGVGKSALALEWARALLCEAPRPDGSACGVCPACH 66 Query: 81 EIEQGRFVDLI------------EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 E G D E A+ +V+ RD +D VQ + R ++V L+D Sbjct: 67 WFETGAHPDFRRVGLQEKTSKEGETRLATAIEVDQARDAVDFVQLSTYRAGYRVVLVDPA 126 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ + NALLK LEEPP + F+L P++L TI SRC + + + Q L Sbjct: 127 DSLNLAAANALLKVLEEPPLNTVFVLVADQPRRLLPTIRSRCTRLDVGLPALAQATAWL- 185 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E+ + L A G+ AL + + V Sbjct: 186 ---GEQGV----DDAPTLLALAGGTPLAALGWCEGEVLDERRGVLEGLAR---------- 228 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + + + + + + L + V+L + Sbjct: 229 ------------PQALDPVTLGERWKAVAPQTWHDVAYKWLGDLLAVRLGGS--VQFNQD 274 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + L R + +T + L + +R + ++ L+ Sbjct: 275 FIDVLATLGREADLGKLLALAKTQADEGRTLAHPLNRSLQLQAWLVEYRH 324 >UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacteria RepID=B1ZVQ2_OPITP Length = 448 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 113/307 (36%), Gaps = 50/307 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA + RP+ A+VVGQ H+L L ++ R + +F G G GKTSIA +A+ Sbjct: 27 QPLAARMRPRRLAEVVGQSHILKPGSLLPRLVAQNRFG-SLIFYGPPGCGKTSIAEAIAQ 85 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 N A + V + R++L + + P Sbjct: 86 ETNSR-------------------------FVRVNAVMSNVAELREILHSARRLPQAS-- 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ + LL +EE + + +LSR F L+ L Sbjct: 119 TILFIDELHRFNKSQQDLLLPDVEEGTVRLIGATTHNPGFYVNPPLLSRSHLFRLEPLSP 178 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQ 231 + L+ L +E + + + L LA +G LR AL+ + + G Sbjct: 179 AAVTGVLKKALADEERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVLVLGLPEGGV 238 Query: 232 VSTQAVS----------AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + D + +++ ++ + + + + A G + + Sbjct: 239 ITPAELEVFARERRIRYDADEDEHYDTISAFIKSCRGSDPDAALYWLAKMLAGGEDPRFI 298 Query: 282 LVEMLGL 288 ++ L Sbjct: 299 ARRLVIL 305 >UniRef50_A5GNS9 ATPase related to the helicase subunit of the Holliday junction resolvase n=46 Tax=cellular organisms RepID=A5GNS9_SYNPW Length = 737 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 112/353 (31%), Gaps = 54/353 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ + VGQ +L L ++ R+ + + G GVGKT++AR++A Sbjct: 23 PLADRLRPRNLDEFVGQGAILAEGRLLRRAIAADRVGN-LILHGPPGVGKTTLARIIANH 81 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 A V+D R + G Sbjct: 82 TRAHFS-------------------------SLNAVLAGVKDLRAEVSEAGQRLERHGLR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDEVH + +ALL +E + ++ ++SR F L+AL Sbjct: 117 TILFIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQALTP 176 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAI----ASGD 229 + L L + I EP A L A G R L+ + A+ A + Sbjct: 177 GDLSKLLNSALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALELAVDSTPADEN 236 Query: 230 GQVSTQA------------VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G V + G D + ++++ ++ + + + G Sbjct: 237 GLVRIDLGIAEESIQQRAVLYDKQGDAHFDTISAFIKSIRGSDPDAALFWLARMVEAGEN 296 Query: 278 WEALL-VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 + ++ + + + AA R+ P LY Sbjct: 297 PRFIFRRMLISAGEDVGLADPQAVVVVEACAAAFERIGLPEGLYPLAQAALYL 349 >UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase interacting protein isoform 1 n=2 Tax=Apocrita RepID=UPI0000DB7733 Length = 433 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 108/321 (33%), Gaps = 57/321 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA K RP F D +GQE V+ T L L+ G I + +F G G GKTS+ +++K Sbjct: 13 ISLAEKMRPACFHDYIGQEKVVGSNTILQQLLTKGHIP-SMIFWGPPGCGKTSLTNIISK 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 G I +A+ + V + +++++ + + Sbjct: 72 ISKEMHGEKVN-------------------IINLSATSSGVSNIKNIINKTKTESKFNQI 112 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++D++H ++ + L +E + L +LSRC F L L + Sbjct: 113 -IVIMDKIHRFNKLQQDIFLPHVETGTFTLIGTTTENPSYSLNSALLSRCRIFALNKLTM 171 Query: 181 EQIRHQLEHIL---------------NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI 225 I L + ++ H A+ LA +G R AL+ + AI Sbjct: 172 LNIVEILCKAISSINGEIYNFSLKNFSKPHFFINKTAIDWLAEVCDGDARVALNDLELAI 231 Query: 226 ASGDGQ--------VSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMAL 267 ++ + V + +L +++ + Sbjct: 232 KIKISNKLNSNFVSITLEDVKESVKQTHMLSDKQSNNIQHLYSALHKSIKAGKENASLYW 291 Query: 268 INEAAARGIEWEALLVEMLGL 288 + + + ++ + Sbjct: 292 LARIMDIKEDPVDIARRLIRI 312 >UniRef50_UPI00015B415D PREDICTED: similar to werner helicase interacting protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B415D Length = 522 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 118/327 (36%), Gaps = 65/327 (19%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA K RP + VGQ+HVL T L LS I + + G G GKTS+A ++A Sbjct: 109 IPLAEKMRPNSIMSYVGQKHVLGPETMLYQLLSKTEIPN-IILWGPPGCGKTSLANVIA- 166 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 C +C G++ + A+ + + D +D + GR Sbjct: 167 -------------NTCQHC---PGGKYRYVKLS--AAMSGISDVKDAITIASNELKFGRR 208 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V +DE+H ++ + L +E + + ATT+ L +LSRC L+ L Sbjct: 209 TVMFMDEIHRFNKTQQDTFLPHIE--SGTIILIGATTENPSFSLNAALLSRCRVIVLEKL 266 Query: 179 DVEQIRHQLEHILNEEH-----------------IAHEPRALQLLARAAEGSLRDALSLT 221 +E + L + + ++ LA ++G R AL Sbjct: 267 TIENLTEILIRAIKAAGGAVHDFEKPPNASINNKFFIDRETVKWLAETSDGDARIALGGL 326 Query: 222 DQAI-----------ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEAN 260 + AI +SG +S V L G D +L +++ ++ Sbjct: 327 ELAIHSKVPSSEGSSSSGLNFISLDDVKDSLKKTHMLYDKKGDQHYDMISALHKSVRASD 386 Query: 261 GERVMALINEAAARGIEWEALLVEMLG 287 + I A G + + ++ Sbjct: 387 DNAALYWITRMMAGGEDPVYIGRRLVR 413 >UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ98_ALIAD Length = 447 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 62/377 (16%), Positives = 130/377 (34%), Gaps = 60/377 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ ++VG E+++ L + R+ + + G G GKT+IA ++A+ Sbjct: 17 PLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDRL-MSIILYGPPGTGKTTIAEVIARQ 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 A + + D R ++ + R Sbjct: 76 TKARFIP-------------------------LNAVTSGIADVRKAVETAREERDLYARR 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ +ALL +E + + +LSR F L+ L Sbjct: 111 TVVFLDEIHRFNKSQQDALLPHVEAGLLSLVGATTENPYFDVNAALLSRSHVFRLEPLSP 170 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 + I ++ + +E + P A ++L A G R AL+L + A + Sbjct: 171 DDIGRLVDMAIADEERGLGRMRVRLHPDARRVLTLQARGDARRALNLLELAAFAARVGPD 230 Query: 230 --GQVSTQAVSAML-----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 ++ + V A L G D + ++++ ++ M + + G Sbjct: 231 GATEIGMREVEAALEASGGPRYDRAGDDHYDTISAFIKSVRGSDVNAAMLWLAKMLEGGE 290 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + + ++ I + A N + + A I + ++ + Sbjct: 291 DPAFIARRLM-----ILAAEDVGMADPNALPIAVSGWQA-AMAIGMPEARIVLAEVTAYL 344 Query: 337 KELPYAPDRRMGVEMTL 353 + P + M + L Sbjct: 345 AKAPKSNHAYMAINRAL 361 >UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=Caulobacteraceae RepID=C5SNN8_9CAUL Length = 336 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 22/253 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P+ D + E TA + LS GR+HHA+L G GVGK ++A A+ L Sbjct: 13 PRQVFDFIQGEAQETAFLDALSRGRLHHAWLLCGPEGVGKATLAYRAARYLMGHQRDRGF 72 Query: 71 ---TPCGVCDNCREIEQGRFVDLIEIDAA-------SRTKVEDTRDLLDNVQYAPARGRF 120 + R I DL+ ++ V+ R++++ AP+R + Sbjct: 73 GILGMSEEDPDARLIVAQSHPDLLVLEREQKDGKTRKNITVDAVREVVEFFSKAPSRSAY 132 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V ++D V L+ +S NALLK LEEPPE L + P KL TI SRC + D Sbjct: 133 RVCIVDAVDDLNINSANALLKILEEPPERGLLFLISHSPGKLLATIRSRCRRLGFSPWDD 192 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E ++ + + P L+ L A+GS L L ++ + + + Sbjct: 193 EAVQRFISARAD-----LSPEQLERLVVMAKGSPGKGLRLWEEGALE-----MDELAARL 242 Query: 241 LGTLDDDQALSLV 253 L + L+ Sbjct: 243 LSDAQPAR-FDLL 254 >UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U314_PHYPA Length = 498 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 74/333 (22%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP + VVGQ+H+L L N + + + +F G G GKTS+ + + Sbjct: 76 SLEPLAERMRPASVDLVVGQDHLLGPRCMLRNLIDANSLS-SIIFWGPPGTGKTSLVQTI 134 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A+ ++ +A + +++ R+ L+ + G Sbjct: 135 ARAVSYR-------------------------FVALSAVSSGLKEVRETLEEAKRLQKFG 169 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + L+DE+H ++ + L +E H+ + ATT+ ++ +LSRC L Sbjct: 170 ERTLLLLDEIHRFNKAQLDVFLPCVE--AGHIVLIGATTENPSFEINAALLSRCKVLTLN 227 Query: 177 ALDVEQIRHQLEH-ILNEEH--------------IAHEPRALQLLARAAEGSLRDALSLT 221 L + IR L+ I ++E I E AL+ LA AA+G R AL+ Sbjct: 228 KLQPDHIRSLLDRAISDKEKGLMVSLAGSAAEDVIKVEQDALEFLADAADGDARVALNTL 287 Query: 222 DQAIASG--------DGQVSTQAVSAML------------------GTLDDDQALSLVEA 255 + A + S S +L G + +L+++ Sbjct: 288 ELAGLAAFASWESTPRRPCSADKASTILADANAKAIQRSYFLFDKSGEEHYNIVSALIKS 347 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGL 288 M + + + + G + ++ Sbjct: 348 MRGGDPDAAIYWLARMLEGGEGPLYIARRLIRF 380 >UniRef50_Q89AG8 DNA polymerase III subunit delta' n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=HOLB_BUCBP Length = 336 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 120/334 (35%), Gaps = 42/334 (12%) Query: 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNCREIEQGRFVDLIEI 93 + HH+ + + +G T +A+ ++ L C+ + C C +C+ + D Sbjct: 21 NKGHHSIILESHKNIGITCLAKHISLWLLCQKKNKSIYHCKTCHSCQLMNSKNHPDWHYF 80 Query: 94 --------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 +++ V + R+ + + + +G+ K+ I + L+ + N+LLK +EE Sbjct: 81 GSNTCLSKNSSKTIGVNEVRNFTNTIFNSAQQGQNKIVYIPNIKKLTEFAINSLLKIIEE 140 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH--ILNEEHIAHEPRAL 203 PP++ FLL P K+ T+ SRC+ +L E L+ I + I Sbjct: 141 PPQNTYFLLINYLPHKIITTLRSRCIIHNLYGPTKENRIEWLKEQNINTNQKIHMSMLYS 200 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN-GE 262 ++ ++ + +L Q +L + + L ++ + + Sbjct: 201 NEISFISK--CKHSLFFLYQE--------RLNFFETLLTSFQEKNFLKMLNVLNNKKCLD 250 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 ++ I ++++ + H I ++ LA Sbjct: 251 QIFIWICG----------IILDSIKWKHDI--------NTIIINTDQTKIIQILASNFSI 292 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + Y++ + + + +E+ ++ Sbjct: 293 LSLDNSYKSWIYCYNNIKN--IPGINIELLFVKQ 324 >UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepID=A5WC21_PSYWF Length = 439 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 119/310 (38%), Gaps = 51/310 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA++ RP+ +V+GQ H+L + + G + + + G G+GKT+IA LLA Sbjct: 13 IPLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVEHGHLP-SLILHGEAGIGKTTIAMLLAD 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 + +A T V+ R++LD + G Sbjct: 72 AVGRP-------------------------FYPLSAINTGVKQLREVLDAGSSSGQGGLD 106 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V IDE+H ++ +ALL +E + + +LSRC + L+ Sbjct: 107 FASPVVFIDEIHRFNKAQQDALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLQP 166 Query: 178 LDVEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDG 230 LD QI L+ L+++ ++ + +AL +A A+G R AL+L + QA Sbjct: 167 LDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQASDHSKQ 226 Query: 231 QVSTQAV------------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 + G D ++++++ ++ + + + G Sbjct: 227 PIVIDDALLSSVAQTTLQRYDKDGDQHYDIISAMIKSVRGSDPDAALYWMARMLVAGEPP 286 Query: 279 EALLVEMLGL 288 E + ++ L Sbjct: 287 EFIARRLVIL 296 >UniRef50_Q8QN66 EsV-1-224 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QN66_ESV1 Length = 324 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 90/264 (34%), Gaps = 27/264 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K RP DV G +HV+ AL + S+ + + G G GKTS +AK Sbjct: 2 VSWTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPN-MILHGPPGSGKTSSIISMAKSFF 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 T I + +E++A + RD + + Sbjct: 61 GRTNI------------------SIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTN 102 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DE L+ + AL +E +F L +L + SRC F + Sbjct: 103 ALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGI 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV---STQ 235 Q+ H L + +E + L + + G R ++L + Q Sbjct: 163 GNVQLAHTLREVARKEDLEISEEGLNAVVKVCAGDARQGINLLQSLSLGDATTLVVRDDQ 222 Query: 236 AVSAMLGTLDDDQALSLVEAMVEA 259 AV A G Q + E ++ Sbjct: 223 AVYATCGLPSPSQTSEIFEVLLNQ 246 >UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A0RRQ8_CAMFF Length = 397 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 38/292 (13%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L+ +RP D+VGQ+ ++ + + +I H+ LF G G GKT++A+++AK +N E Sbjct: 3 LSNDFRPNNINDMVGQKDIVELFSKFIKSKKIPHS-LFFGATGCGKTTMAKIIAKQMNYE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 E+D A K ED R ++ + + I Sbjct: 62 ------------------------FFELDGA-NLKSEDIRKIISKFETTLY---KPLIFI 93 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE H LS+ LL +E+ V + I SR + F K L +++ Sbjct: 94 DEFHRLSKTQQETLLIPMEKGKCIVMGATTENPKFVVSSGIRSRMMIFEFKPLSHDELTI 153 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-------GQVSTQAVS 238 L + N A L ++ G R L+L + A+++ + + VS Sbjct: 154 LLTKVQNVIKFEITNEAKDYLINSSGGDARSLLNLLEFALSADKSIGLNILKTLRSHRVS 213 Query: 239 AML--GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + + +L++++ ++ + + + G E L M+ Sbjct: 214 EGVSNSDTHYELTSALIKSLRGSDIDASIYYLARLIQGGEEPAFLARRMVIF 265 >UniRef50_B8FY25 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8FY25_DESHD Length = 282 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 109/295 (36%), Gaps = 32/295 (10%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 L + GR+ H LF G G + +A+ +NC +G A PCG C +C++I Sbjct: 4 ALHLIEKAAQEGRLAHLLLFHGGSGPERRKAGLEIARRINCTSGQDA-PCGHCPSCKKIL 62 Query: 84 QGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D+ + A +E D + V G +KV++++E L+ + NALLK Sbjct: 63 SGNHPDVEVVKPAKASIGIEQILDWQERVYRKHYEGNYKVFILEEADKLTIPAANALLKV 122 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPPE +L+ + + L TI SR + E+ LE + +P Sbjct: 123 IEEPPERTLIVLSAQNAEVLLPTIQSRAQAVYFPFRGEEEWLKSLEE-------SLDPWE 175 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + R + + A + + + V +A+ E + Sbjct: 176 AREAFRLSSHNPELAYEIL---------TLGVEKVKE--------WIRGFEQAVEEGDFL 218 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 ++ L + +L + H++ + +++ A Sbjct: 219 KLFPLFPVEKKEAELYLHILALGIAQKHQV------NPQAMLAVGKAIEQIQMQA 267 >UniRef50_B2S5K7 Replication factor C conserved domain protein n=38 Tax=Proteobacteria RepID=B2S5K7_BRUA1 Length = 360 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 118/319 (36%), Gaps = 40/319 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG--- 74 + G + + LA GR+HHA LF G +G+GK ++A LA + P Sbjct: 26 LAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEAPETLIA 85 Query: 75 ---VCDNCREIEQGRFV---------DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 R+I G D + VE+ R + + + +++ Sbjct: 86 PDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTASDHAWRI 145 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++R++ NALLKTLEEPP F+L + +L TI SRC K LD E Sbjct: 146 VIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFKPLDGET 205 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L H ++ I+ ++L + +EGS+R A +S + Sbjct: 206 LGRALSHAGSKAGISAGDIT-EVLLQRSEGSVRK---------ALLLLAHGGLEISDTVD 255 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L +A + + I +++ L M +++ A Sbjct: 256 QIIAGSIFDLPKA-------QALGGILNGREAEVQY--------ELFRDYLMGRIAAEAR 300 Query: 303 GNDMAAIELRMRELARTIP 321 + + AR Sbjct: 301 RYADSGQLREADQWARFWS 319 >UniRef50_A8LF28 DNA-directed DNA polymerase n=10 Tax=Actinomycetales RepID=A8LF28_FRASN Length = 418 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 126/381 (33%), Gaps = 68/381 (17%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 + + H++LF+G G G AR A GL CE CG C C + DL Sbjct: 40 AAARAGMTHSWLFTGPAGSGLADAARAFAAGLLCENIPPG--CGQCPGCHTVLSDTAADL 97 Query: 91 IEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + V D R L+ + AP+ GR+++ LI++ + + NALLK LEEP E Sbjct: 98 RTVRPEGLSIGVRDVRALIRDAASAPSAGRWRILLIEDADRFTDSAANALLKALEEPAER 157 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + TI SRC L+ + + + L E + +LA+A Sbjct: 158 AVFLLCAPSVDDVLPTIRSRCRSVALRLPNPKNVADVLIREGTAEDL------AAVLAQA 211 Query: 210 AEGSLRDALSLTDQAIA---------------------------------------SGDG 230 ++G + A L A + Sbjct: 212 SQGHVGQARRLATDPQARARRESVLRLPSRLRRVGDCLAAAADLVDAANADAQAANAERD 271 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEA-----------MVEANGERVMALINEAAARG---- 275 +V T+A+ LG A + + + Sbjct: 272 EVETEALKTALGVGATSSGTRSTSARGAKAGAKPRSLQVRGAAGALKELERTQKSRGRRT 331 Query: 276 --IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 + LV++ GL + + QL + + +LA P ++ +L Sbjct: 332 VLDSLDRALVDLAGLYRDVLVQQLRGQ-VTPVHLDQADAVAQLAAAATPEQTLRRWEAVL 390 Query: 334 IGRKELPYAP--DRRMGVEMT 352 R+ L P ++ E Sbjct: 391 ATRQALADNPGLVPQLAAESL 411 >UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYK9_9BACT Length = 216 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 7/211 (3%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + + GQ+ L L+ L+ G A L G GVGK + A L++ + C PCG Sbjct: 10 LSSIRGQDRALARLSRILAGGLRSGAVLLWGPEGVGKRTTALALSRRILCAEPQEGAPCG 69 Query: 75 VCDNCREIEQGRFVDLI--EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 C +CR D E ++ R+LL + ++ L+DEVH L+ Sbjct: 70 RCLSCRT-PLAAHPDFHLLEPGETQSIGIDAVRELLRGTLESSLVSPVRIALLDEVHRLT 128 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + N+LLK+LEEP +++ F L + P +L T+LSR L+ L L + Sbjct: 129 PEASNSLLKSLEEPSDNLLFFLVSPSPDRLLPTLLSRLLKVRFLPLSDGD----LAAVAR 184 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 E P A++ + GS L L D Sbjct: 185 ERRPESPPEAIERALPLSGGSAGRLLGLVDS 215 >UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IXK5_MYCAP Length = 404 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 50/344 (14%), Positives = 116/344 (33%), Gaps = 53/344 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA + RP+T D++GQ+ V+ L ++ +I+ +++F G G GKTS A LA L + Sbjct: 4 LANELRPKTLDDIIGQKSVVELLKK-VARDKIYSSFIFFGESGTGKTSAAVALANDLGLK 62 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 +A+ +K E + L DN V +I Sbjct: 63 YD------------------------YFNASVNSKAELIKMLADN----------DVLII 88 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE+H L++ + LL LE + ++ + SR L +++ Sbjct: 89 DEIHRLNKDKQDILLSYLEFDKIIIYATTTENPYFRVNPALRSRMQILQFTKLSEQEMFE 148 Query: 186 QLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML- 241 ++H L + + +++ + + G R L+ + +S + + Sbjct: 149 GIKHNLKKYFPDYQMDESTIKVFVKLSNGDYRSCLNNLQILTLMSKNKQISLDDIKKFVP 208 Query: 242 ---------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + + + +++ ++ + + G + + Sbjct: 209 NISFYSDENSSAHYNNLSAFHKSLRGSDVDAALYYGAIIVKSGDLQGLFRRLIACSYEDV 268 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + + + + +P + ++Y + + Sbjct: 269 GLADPNLQIRVKNAIDCAELL-----GLPEARLPIFYAIISVAL 307 >UniRef50_D0LQE3 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQE3_HALO1 Length = 298 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 T + GQE V+ L L R+ HAYL SG GVGK + A L + C C Sbjct: 14 TLDQIRGQERVVARLRRALEQNRVAHAYLLSGPAGVGKLTTAVALTAAIECIDAP-GQGC 72 Query: 74 GVCDNCREIEQGRFVDLIEIDAASR---TKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH 129 G C C +I G D+ ++ +E R ++ + P G +V+LIDE + Sbjct: 73 GTCSACSKIAAGIHPDVQLLERQGAAQIIPIETIRTQVIPRLAMPPHEGAARVFLIDEAN 132 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 L S NALLKTLEEPP F L TT P L TI SRC + L Sbjct: 133 ALPGPSANALLKTLEEPPPRTHFFLCTTAPDLLLPTIRSRCQRVAFAPL 181 >UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGG4_ACHLI Length = 412 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 69/406 (16%), Positives = 145/406 (35%), Gaps = 58/406 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+ F +V GQ+H+L+ L + + +++ G G GKT+IA+L + Sbjct: 2 EPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKY-LSFILYGPPGTGKTTIAKLFS- 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +D +A++ K +D+LD Y Sbjct: 60 -----------------------DKSMLDTYFFNASTDNKA-KLKDILDMTAYHDV---- 91 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++DE+H + + LL LE + L Q + + I SRC + +KAL Sbjct: 92 -LIIVDEIHRMKTDIQDYLLPFLESGKAIMIGLTTLNPYQSINMAIRSRCHLYEIKALSD 150 Query: 181 EQIRHQLEHILN--EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQA 236 + I + + + + I AL + RA+ +R AL+L + A D ++++ Sbjct: 151 KDIEAAILNAIQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNI 210 Query: 237 VSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + + G + +L +++ ++ + + + G ++ Sbjct: 211 IRKLAGKPQLSLDDHENHYFEMLSALQKSIRGSDVDASIHYLARLLTLG--------DLE 262 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 + R+ ++ L N ++ A + + L + ++ +P Sbjct: 263 IIFRRLIVIAYEDIGLANPTMGQKVLAAIQAAKMT--GLPEARIPLSVIVVDMALSPKSN 320 Query: 347 MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 F + P P+ + P + P P Sbjct: 321 TAYSALDKAMEDFQNGLAGPIPKHIDNKYIKQHPDSYKYPHNDPGS 366 >UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX73_9BACL Length = 278 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 19/256 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PCGVCDNCRE 81 V+ +L N L ++ HAYL G + K + C C C NC Sbjct: 9 VIKSLTNTLKTDKLSHAYLIVGEDSLYSDEFILSFVKAIFCLENKDKEFYSCENCKNCNS 68 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 I G +VD ++ + + K ++ + L ++ G+ K+Y I ++ ++ + N+LLK Sbjct: 69 INHGNYVDFYKLSSETSIKKDEIQTLKSDLSVKSFYGK-KIYWIKDIEKMTEQAANSLLK 127 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 LEEP + + +L+ + + TI+SRC Q++ I + EHI E Sbjct: 128 FLEEPEDDIIAILSCKNISAILPTIISRC--------------QQVKLIGHSEHIEIEQN 173 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L+A E R I + S V L + S + + ++ Sbjct: 174 E-ELIAITNEYVKRYMRKPHLANIYLLEKLKSKDEVVEFFNYLSMKVSKSYSDEI-ASDV 231 Query: 262 ERVMALINEAAARGIE 277 + + + + Sbjct: 232 VNISKVQEKILQAQAD 247 >UniRef50_D2RSM2 AAA ATPase central domain protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RSM2_9EURY Length = 497 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 100/293 (34%), Gaps = 46/293 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP T ++V G L H A + G+ GVGKTS A LA + Sbjct: 3 WTEKYRPTTLSEVRGNNKARDKLEEWAETWDGHRDAVIVHGSPGVGKTSAAHALAGDMGW 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA----RGRF 120 ++E++A+ + + + Sbjct: 63 P------------------------VMELNASDSRGADVIERIAGEASKSGTLTGGEAGR 98 Query: 121 KVYLIDEVHMLSRHSFNA-------LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 ++ ++DE ++ ++K +P +L + + ++ + C Sbjct: 99 RLVILDEADNFHGNADYGGSAEVTRVVKDANQP-----IVLVANEFYDMSQSLRNSCETI 153 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + + I L I E + E AL+ +A G LR A++ QA+A +++ Sbjct: 154 EFRDVSKRSIVPVLRDICRREDVEFEEEALEKIAEDTSGDLRSAVNDL-QAVAEEAERLT 212 Query: 234 TQAVSAMLGTLD-DDQALSLVEA-MVEANGERVMALINEAAARGIEWEALLVE 284 + V + G D + ++A + E + E + + E + + Sbjct: 213 VEDV--VTGQRDTTEGIFDFLDALIKEEDAEGALRASYDVDENPDEMLNWIED 263 >UniRef50_C5DIS0 KLTH0E14696p n=2 Tax=Saccharomycetales RepID=C5DIS0_LACTC Length = 384 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 40/345 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALAN-GLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS + K+RP++ + + L + + + H LF G G GK + L Sbjct: 27 MS--LWVDKYRPKSLDALTHTPRLTHLLKSLSVEPRDLPH-LLFYGPNGAGKKTRCMALL 83 Query: 60 KGLNCET--------GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV 111 + + TP + +++ D + ++ ++LL V Sbjct: 84 QSIFGSGVYKLKIDVRQFTTPSNRKLELNVVSSPYHLEITPSDMGNNDRI-VIQELLKEV 142 Query: 112 QYA--------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 R+K +I+E L+R + AL +T+E+ +++F++ Sbjct: 143 AQMEQVDFQTASGAETGGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSRNIRFIMLCE 202 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRD 216 + I SRCL A ++ L + +E + E A L +A + +G+LR Sbjct: 203 SMSSMIAPIKSRCLLVRTPAPTTQETADALVKVGGQEKVTVEDEAILNTIAESCDGNLRK 262 Query: 217 ALSLTDQ-------AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 AL + + S + V +L + V ++V A + Sbjct: 263 ALLTFESMALNNEMCLKSSTALIRADWVVVILKMANRILKDRSVSSLV-----ECRATLY 317 Query: 270 EAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + A I + ++ E+ L A+ + + R+R Sbjct: 318 DLLAHCIPAKVIIQELAFALLDAIHNDNHKIAVVQWASVFDERLR 362 >UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A039 Length = 672 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 117/333 (35%), Gaps = 73/333 (21%) Query: 3 YQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 ++ LA + RP T ++GQ L L +G I + +F G G GKTS+A ++A Sbjct: 269 FRPLAERMRPYTMDTLIGQNKALGATGTLRRLLDVGNIP-SMIFWGPPGCGKTSLANVIA 327 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + + + S V D + ++ + R Sbjct: 328 R-------------------QAKVRNTHRFITFSATTSN--VSDVKSAVEIARNEQRMYR 366 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 K + IDE+H ++ + L +E + + ATT+ ++ +LSRC L+ Sbjct: 367 RKTILFIDEIHRFNKTQQDTFLLHVEN--GTIILIGATTENPSFRVNSALLSRCRVVVLE 424 Query: 177 ALDVEQIRHQLEHILNE-----EH------------IAHEPRALQLLARAAEGSLRDALS 219 L E I LE L E E+ I+ E AL LLA +G R AL+ Sbjct: 425 KLSPESIMLILERALKEGQVGIENAEHLHKTCWSTTISIEREALCLLANLCDGDARSALN 484 Query: 220 LTDQAIASGDGQ----------------VSTQAVSAML----------GTLDDDQALSLV 253 + G ++ + L G + A +L Sbjct: 485 SLQMVLDVAKGSTGGQQADASKVLRSSVITIDQIRDSLQRSHISYDKSGEEHYNCASALQ 544 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEML 286 +++ ++ + + G + + ++ Sbjct: 545 KSIRASDANAAVYWLGRMLVGGEDPLYIARRLV 577 >UniRef50_B3PM47 ATPase, related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM47_MYCA5 Length = 402 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 103/326 (31%), Gaps = 49/326 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + LA+K RP D V + ++ +++F G G GKT+I+ +LA Sbjct: 1 MN-KNLAQKTRPIALDDFVCNDSQRFLFEKIIANDDF-RSFIFYGKPGTGKTTISYILAS 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L D +E DL+ ++ Sbjct: 59 SL----------------------KVSFDYF------NAAIEKKEDLVAKLKL------N 84 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +IDE+H L++ + LL +E + K+ + SRC +K + Sbjct: 85 KILIIDEIHRLNKDKQDILLPYIENDLITIYATTTENPYFKVNPALRSRCAIVEIKNPSI 144 Query: 181 EQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAV 237 + + QL+ I + +A + G R A++ D +++ + Sbjct: 145 DDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSAINSLDLISTLSKTKKLTLDEI 204 Query: 238 SAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +L G D + +++ ++ + G + Sbjct: 205 KKILPAIQFTGDSNGDAHFDHLSAFHKSLRGSDPNAALYYGFILVESGDFDGLFRRMICA 264 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRM 313 + + + + R+ Sbjct: 265 AYEDVGLANPNLPVQVMNAIDAFERL 290 >UniRef50_Q5UQ47 Putative replication factor C small subunit R395 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS1_MIMIV Length = 319 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 58/339 (17%), Positives = 123/339 (36%), Gaps = 26/339 (7%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP DV+ +++ + N R + + +G+ GVGKTS R +AK Sbjct: 3 NSIPWIEKYRPVNIDDVIIDDNISKQI-NIFLQDRENVHLIITGSPGVGKTSTVRCIAKE 61 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF- 120 L E +EI+AA V ++ Sbjct: 62 LLGEDMSQG-------------------YLEINAAEDRGVRSISTIIPPFCKKVFAANKS 102 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ L+DE +++ + +++ KF+ D K+ I S C K L Sbjct: 103 KIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTD 162 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L I E I ++ + L+ + + G +R +++ Q A +++ V + Sbjct: 163 EQINQYLSKICVNEKIPYDEQGLRTICYISNGDMRKSINDL-QKTAFTFEKITKNLVLKI 221 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 D + ++ +E+N E+ ++N + ++ + +L + +S Sbjct: 222 CKVPDPEDIRKIISLCLESNLEKADEIMNNIIKLDYCYFDIVTSFIYVLK---VYDMSEN 278 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKE 338 + + +++ + + L+ + Sbjct: 279 LRLRLIMIVNETKINISKGLRSKLQLTGMICRLIKEIQR 317 >UniRef50_Q8TZC5 Replication factor C large subunit n=1 Tax=Methanopyrus kandleri RepID=RFCL_METKA Length = 510 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 103/313 (32%), Gaps = 50/313 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALA---NGLSLGRIH--HAYLFSGTRGVGKTSIARLL 58 K+RP++ ++V Q+ LA N + G I A L G G GKTS A L Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYAL 61 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-- 116 A D+IE++A+ + ++ + + Sbjct: 62 AHDFG------------------------WDVIELNASDKRTRNVIEKIVGGASTSRSLL 97 Query: 117 ---------------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDP 159 + L+DEV + + L + +L DP Sbjct: 98 RMTREAGGDYEHVEGHSDRVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDP 157 Query: 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 LP ++ + L V I L I E I +E AL+ +A+ A G LR A++ Sbjct: 158 WVLPKSLRDAVRMIEFRRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAIN 217 Query: 220 LTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 + A+A G+V++ V A+ + + + + + + Sbjct: 218 DLE-ALARPTGRVTSDDVEALGWRDKEITIFEALGRIFNKPPRQARRALWNLDEDPDDVI 276 Query: 280 ALLVEML-GLLHR 291 + + + Sbjct: 277 LWIAQNIPRAYRD 289 >UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3744E Length = 423 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 132/356 (37%), Gaps = 52/356 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA K RP+T ADVVGQEH+L L + G + + +F G GVGKT++AR+ Sbjct: 1 MSA-PLADKIRPKTLADVVGQEHILADGKPLRRIIDSGTVPN-MIFYGPSGVGKTTVARI 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + A CG + + + D +D++ ++ + Sbjct: 59 I-----------AENCG--------------MSLYKLNGTNASISDIKDVVADIGTFGSE 93 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + +DE+ L++ +LL+ +E + + ++SR F K Sbjct: 94 NGI-LLYLDEIQYLNKKQQQSLLEYIENGDITLIASTTENPYFSVYNAVISRSTVFEFKP 152 Query: 178 LDVEQIRHQLE---HILNEEH---IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG- 230 + EQ+ + I++EE+ + ++ +A + G +R A++ + A+ G+ Sbjct: 153 VSAEQLMPAIRRAFRIMSEENGYAVEASDDIIKQIAYSCGGDVRKAMNTAELAVVCGEAS 212 Query: 231 ----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 V+ ++ + G D +L +++ ++ + G Sbjct: 213 DGKVAVTADSLKILAQRSNMRYDRDGDQHYDILSALQKSIRGSDENAALHYAARLIEAGD 272 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ I + A+ L++ IP + + T Sbjct: 273 IISLSRRLLVIAAEDIGLAYPQAIAITKACVDSALQLGLPEARIPLAEAIILLATA 328 >UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=Shewanella RepID=A8H3V9_SHEPA Length = 305 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 1/169 (0%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 L + L R+ HAYL G G S+ LAK C CG C C+ IE Sbjct: 11 LDKFSEQLKTARVGHAYLVGMDAGYGGESLVLELAKMSLCHQLGQGGACGFCKACQLIEA 70 Query: 85 GRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 DL ++A + KV+ R+L + +G +V +I L++ S NALLKTL Sbjct: 71 NNHPDLYLVEAEGAQIKVDQIRELCQKLTTTSQQGGRRVAVILNSERLNQASGNALLKTL 130 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 EEP + LL T P +L TI SRC + ++ + Q++ L+ L Sbjct: 131 EEPGKDTILLLQTNAPSRLIATISSRCQRLRVELPNKMQVKQWLKEQLT 179 >UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPI4_BDEBA Length = 449 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 102/307 (33%), Gaps = 49/307 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 L+ RP+T D+ GQ+ L + L L G + + + G G GKT+ A L++ Sbjct: 27 PLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLP-SLIIWGPPGTGKTTFALALSQH 85 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 N A + + R++ + + + + K Sbjct: 86 FNAH-------------------------YVHLNAVDSGAKALREVGEAGKDRRLQYQQK 120 Query: 122 -VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+H ++ + LL +E+ + +L +LSRC + L Sbjct: 121 TILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSYELNRALLSRCRVVIFERLSE 180 Query: 181 EQIRHQLEHI----LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV---- 232 + + ++ A + L ++G R ++ + +V Sbjct: 181 DDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL 240 Query: 233 -STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 + +L + D + ++++ ++ + M + G + + Sbjct: 241 LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFI 300 Query: 282 LVEMLGL 288 ++ L Sbjct: 301 ARRLIIL 307 >UniRef50_Q2FUA8 Replication factor C subunit n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUA8_METHJ Length = 331 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 104/293 (35%), Gaps = 20/293 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP TF ++GQE V L + + H + SG G GK++ + + L + Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPH-LVVSGPPGTGKSAAVEVTLRELYGD 61 Query: 66 TGITATPCGVCDNCR---EIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFK 121 T + + + + + + + + + ++ + P FK Sbjct: 62 TWQDNVTIFRTSDLMERGKYALESDERFLHLYRSDESFLSNFKHIISSYASIRPINAEFK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V L ++ H LS +AL +T+E +F+ TT L I SRCL L + Sbjct: 122 VMLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPLFFTPLSRD 181 Query: 182 QIRHQLEHILNE--EHIAHEPRALQLLARAAEGSLRDALSLT----DQAIASGDGQVSTQ 235 IR L I N+ E L+ AA G LR A+ + I +S Sbjct: 182 IIRDCLNTIQNDIPEPDRVSDDETGLIVAAAGGDLRKAIMYLQVRVETKIPFNPDTLSRT 241 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLG 287 + AM + + + +G+ ++ +L Sbjct: 242 DTQEEACLA--------LHAMKAKDIVAAQKRLQDLMITQGLSGREIISTLLQ 286 >UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4 Tax=Eukaryota RepID=B6KHT5_TOXGO Length = 1101 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 21/231 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLT----ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 LA + RP + + VGQ + ++ L G + + + G G GKT+IA L Sbjct: 603 VPLAERLRPASLEEYVGQRGCIQGGRGSIRELLEAGHLP-SLILWGPPGCGKTTIALLAG 661 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARG 118 + + + + P + + +A V D R ++ + + Sbjct: 662 RSVGKKNSALSLP---------------PPVFKKMSAVTCGVNDVRKVVQEALTLRATTK 706 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + V +DE+H ++ +ALL +E + ++ +LSRC L+ L Sbjct: 707 QKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRALLSRCRVCKLEPL 766 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 E + L+ EE++ A++++ R A+G R AL++ + AI Sbjct: 767 TEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHER 817 >UniRef50_Q4Q084 Replication factor C, subunit 5, putative n=5 Tax=Trypanosomatidae RepID=Q4Q084_LEIMA Length = 351 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 125/381 (32%), Gaps = 55/381 (14%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 ++RP+T DV + L + H LF G G GK + A + + Sbjct: 3 WVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPH-LLFYGPSGSGKKTRAMAMLHEIYGP 61 Query: 66 T----GITATPCGVCDN-CREIEQGRFVDLIEIDAASRTKVE------DTRDLLDNVQYA 114 + + V D+ +I I+I+ + + R++ V Sbjct: 62 SVFSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121 Query: 115 PARGR-----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 G +KV +++EV +SR + +AL +T+E+ + L +L + SR Sbjct: 122 STSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDALSLTDQA---- 224 CL + + + ++ ++ + E A L LA ++G+LR L + + + Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASALAK 241 Query: 225 --IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + + L + D V + A+ I E +L Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQT----PKRLHEVRLKFYDLLAQCISGETIL 297 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 ++ + ++PA ++ + ELA + Sbjct: 298 KTLV----DSLLAAVAPA--------LQRPLIELAAKYD---------------HNMKLG 330 Query: 343 PDRRMGVEMTLLRALAFHPRM 363 + +E + + + Sbjct: 331 TKPILHLEAFVAAVMKLIKQQ 351 >UniRef50_A2E870 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E870_TRIVA Length = 346 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 36/369 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 + RP D+ Q + L + H LF G G GK + + L Sbjct: 5 WIDQHRPHNLDDLTIQSNANELLKSISGSFDFPH-LLFCGPPGSGKKTRVLAFLRKLFNA 63 Query: 66 TGITATP------CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G ++ F I A L +V + G Sbjct: 64 ELTHLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVVGG 123 Query: 120 F--KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 F KV +I+E H LS+ + AL +T+E+ + + +L ++ + SRCL Sbjct: 124 FSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTPR 183 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + I ++ + ++E+ L L + G+LR A++L + G +V Sbjct: 184 IPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLEMLSMQKKGG----SV 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++L E + ++ ++ E G + E+ L+ + + + Sbjct: 240 QSILPE-------------WERYTDELVQILIE----GKLQTETIKEIRVHLYELLVHCV 282 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + + + I ++ T + +E R + Sbjct: 283 PPTEIL------RRIVHGILHQIDSNLVEKVASTAAFYEARMQQGSKPIFHLEAFCARFI 336 Query: 358 AFHPRMPLP 366 + Sbjct: 337 CIYREYFSS 345 >UniRef50_A0CIK7 Chromosome undetermined scaffold_19, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CIK7_PARTE Length = 356 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 126/383 (32%), Gaps = 60/383 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q+ +P++ + + L H LF G G GK + K Sbjct: 1 MLQQLWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPH-LLFYGPNGAGKKTRVLAFLK 59 Query: 61 GLNCETGIT----------ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 + T +C + +D+ DA KV + + + Sbjct: 60 EVYGSGVYTVTEEEKEYKINETSNTTTSCTVLSSKFHIDVAPSDADHHDKVIIQKLIKEV 119 Query: 111 VQYAPARGR----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 + FKV +I+EV L++ + +L +T+E+ E + +L K+ I Sbjct: 120 ASSHQVNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPI 179 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT----- 221 SRCL + A D Q+ L+ I + + + + +A A+ G+LR+A+ Sbjct: 180 RSRCLLIRVPAPDQTQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQSTRV 239 Query: 222 -------DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 DQ IA+ + ++ Q ++ + +Q + ++ + E + Sbjct: 240 NNTCIKDDQNIAAQEWKLHIQH--NIVMPIVKNQLVETMKEIREK--------FYQLLVN 289 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 I + ++ EML + N ++ + ++ Sbjct: 290 CIPVDRIMFEML-------------QGVLNQYKDHANKII----------LYELIKSTAK 326 Query: 335 GRKELPYAPDRRMGVEMTLLRAL 357 + +E + Sbjct: 327 CENRARQGSKGIVHLEALAAEYM 349 >UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID=Q99K91_MOUSE Length = 272 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 91/204 (44%), Gaps = 4/204 (1%) Query: 90 LIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 ++E++A++ ++ R+ + GR K+ ++DE ++ + AL +T+E Sbjct: 20 VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 79 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 + +F LA K+ I SRC L Q+ +L +++ +E + + L+ + Sbjct: 80 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAI 139 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 A+G +R AL+ Q+ SG G ++++ V + +++ V+AN + Sbjct: 140 IFTAQGDMRQALNNL-QSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYK 198 Query: 267 LINEAAARGIEWEALLVEMLGLLH 290 ++ G E ++ + + Sbjct: 199 ILAHLWHLGYSPEDVIGNIFRVCK 222 >UniRef50_Q1YNM8 DNA polymerase III, delta prime subunit domain protein, putative n=2 Tax=Aurantimonadaceae RepID=Q1YNM8_MOBAS Length = 352 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 26/267 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE------TGITAT 71 + G LA+ + GR+HHA+LF G RGVGK + A A+ L Sbjct: 27 LFGHRREFAELASAEAAGRLHHAWLFQGPRGVGKATTAFAFARHLLSPAYAKGTEPPVFD 86 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKV 122 P R+I G + L+ + ++ VE R L Q +R +++ Sbjct: 87 PAD--PAMRQIALGTYPGLVHVTRPPVEKGTGFRTQITVEGVRKLNRFFQATGSRTSWRI 144 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID ++R + NALLK LEEPP FL+ P +L TI SRC + L Sbjct: 145 AIIDPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIRSRCRTLRFEPLGDHD 204 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA-VSAML 241 + L AL +EGS R A+SL IA G ++ Sbjct: 205 LAAATAAALPSAGKDEIAAALP----LSEGSARQAISL----IAYGGIEIRQSLQTLIAA 256 Query: 242 GTLDDDQALSLVEAMVEANGERVMALI 268 D + S+ +A+ + E+ + Sbjct: 257 DRPDWNSIHSMADALTQKGREQAYEFL 283 >UniRef50_A0NSR3 DNA polymerase III subunit delta' n=2 Tax=Rhodobacteraceae RepID=A0NSR3_9RHOB Length = 353 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 37/302 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P ++G AL R+HHA++ G +G+GK ++A A+ + Sbjct: 22 PHERDRLIGHAKTEQALLEAYRSERLHHAWILGGPKGIGKATLAFRFARFVI-ANPDRFG 80 Query: 72 PC----------GVCDNCREIEQGRFVDL-----IEIDAASRTK----VEDTRDLLDNVQ 112 P R+++ G ++ D + R K V++ R + Sbjct: 81 PEVASARDLAVMQDHPVARQLKAGGHPNVLHLRRPWDDKSKRFKADLPVDEVRRTVSFFG 140 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + +++ ++D ++ S NALLK LEEPP+ FL+ + P +L TI SRC + Sbjct: 141 TTASAKAWRICIVDAADDMNISSANALLKILEEPPQRCLFLVLSHAPGRLLPTIRSRCRR 200 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 L L E++ L+ + L+ LA A+GSLR A++L SGDG Sbjct: 201 LDLDPLTEEEVAQGLQDLSG--GSVASSDDLRELALTADGSLRSAITLL-----SGDGLA 253 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + V + ++ +A + A + WE+ M LH Sbjct: 254 IAKGVRQLADRPHQLDLAAVH----------ALADLVAARGQSDNWESFQHIMQIWLHDR 303 Query: 293 AM 294 Sbjct: 304 MR 305 >UniRef50_O64301 DNA polymerase accessory protein 44 n=13 Tax=T4-like viruses RepID=DPA44_BPR69 Length = 320 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 114/334 (34%), Gaps = 41/334 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L +K+RP + + + + + +S G++ H L S + G GKT++A+ L Sbjct: 11 LEQKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKAL------- 63 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYL 124 C + G S K++ R L + G+ KV + Sbjct: 64 -------CNDINAEMMFVNG-----------SDCKIDFVRGPLTAFARSVSMEGKPKVIV 105 Query: 125 IDEVHMLS-RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ- 182 IDE S L +EE + ++ + + + SRC E Sbjct: 106 IDEFDRSGLAESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDK 165 Query: 183 ------IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + H++ I E+I ++++A + + D Q V Sbjct: 166 ISMMKKMIHRMVEICKNENIEIAD--MKVVAALVKKNFPDFRRTIGQLDQYSSKGVLDAG 223 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + +++ D ++EAM + +++ AL ++ + +++ + + Sbjct: 224 ILSIVTN-DRGTVSDVIEAMKNKDIKQLRALAP---KYAADYSWFIDKLVSECYD-QVAP 278 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 ++A + LA I + + Q Sbjct: 279 GKSIISLYEIAGENNKFHGLASNIELHVMYMLLQ 312 >UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 Tax=Acetobacter pasteurianus RepID=C7JGT4_ACEP3 Length = 314 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 118/331 (35%), Gaps = 35/331 (10%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + G + L A + GR+ HA+L +G G+GK + A LA+ L + Sbjct: 10 QLRGHQAALQAFRQAMQGGRLPHAWLITGPPGIGKATFAFRLARILLGGEDELS------ 63 Query: 77 DNCREIEQGRFVDLIE---------IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 R + DL+ S +D R + ++ A G ++V ++D Sbjct: 64 PAGRRVSAATHADLLVVARGFDEKRQKYRSEIVADDVRPINSFLRRTAAEGGWRVVIVDG 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++R + NA+LK LEEPP LL + P +L TI SRC + L +LD + L Sbjct: 124 AEYMNRSAANAVLKILEEPPPATVLLLTCSAPGRLLPTIRSRCRKLELASLDAADMSAVL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 + +Q + A G+ AL+L A G++ V ++ + Sbjct: 184 RAQAPD----ASDTEIQRVMAEAHGAPGRALALL----ADKGGEI-ASLVHEVVQGITPL 234 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 ++ + E ++ + + L + + A + Sbjct: 235 RSYEVAETILRRDYGFSLFF-----------SLLSDTLQIQARQAARQGNPQCVALANAW 283 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 +R + + + I +E Sbjct: 284 EATMRKHAETERFNLDKQEALLEAMTIASRE 314 >UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8W7_MACCJ Length = 306 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 121/331 (36%), Gaps = 40/331 (12%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR-EIEQ 84 L + ++ HAYLF G+ A + A + CG + C I Sbjct: 2 QQLMQAIKNNKLSHAYLFEGSNKQALKEEAIIFASAII---------CGDDEVCHTRIAA 52 Query: 85 GRFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D ++ + K E + L + P G +KVY+I + ++ N++LK L Sbjct: 53 HNHSDFFIMETDEATIKKEMIEEALHKMNQKPIEGSYKVYIIVDFDKVTTQGENSILKFL 112 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP + LL T+ P ++ TI SRC ++ Sbjct: 113 EEPPGNTIALLLTSAPNEILPTIHSRCQHISVQNRQ------------------------ 148 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 +L +E L + + S D +S G + Q ++ ++ ++ + Sbjct: 149 DILLTLSEQIPTPLLMTLSKLMMSEDEAISW-YTEKNFGEI-RSQVVNWLQTLLNGDMMG 206 Query: 264 VMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 ++ + + + + + L + L I +QL+ ++ + E+ ++ +++ I Sbjct: 207 LIQVSQLQSYISERVYQQIALDMVQLFLQDILYLQLNEQSV-SSYPDYEVAIQRISQKIT 265 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + L +++L + + E Sbjct: 266 IQQSINMIEAALNAKQKLLQYVNAALVFEQM 296 >UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Tax=Bacteria RepID=C0X719_ENTFA Length = 425 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 80/464 (17%), Positives = 146/464 (31%), Gaps = 73/464 (15%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 Q LA + RP+ +VVGQ+H++ + + + + + G G GKTSIA Sbjct: 2 QQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLS-SMILYGPPGTGKTSIA---- 56 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 I ++AA+ TK + L V Sbjct: 57 --------------------SAIAGSTNYAFRMLNAATDTKKD-----LQIVAEEAKMSG 91 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP--VTILSRCLQFHLKA 177 + L+DE+H L + + LL LE + + ATT+ + I SR F +K Sbjct: 92 TVILLLDEIHRLDKTKQDFLLPHLEN--GRIIMIGATTENPYITINPAIRSRTQIFEVKP 149 Query: 178 LDVEQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L I+ ++ L + + E +ALQ L RA G LR AL+ + A+ S Sbjct: 150 LTETDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPK 209 Query: 231 ------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 +++ + + G D + +++ ++ + + + Sbjct: 210 NEQGEIKITLPIIEECVQRKALTHDKDGDAHYDVISAFQKSIRGSDVDAALHYLGRLVEA 269 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART---IPPTDIQLYYQT 331 G ++ + R+ ++ LGN AA A P I L Sbjct: 270 G--------DLPIICRRLMVIAYEDIGLGNPAAAARTVTAVQAAEKLGFPEARIPLASVV 321 Query: 332 LLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP 391 + + P + ++ L + A + Sbjct: 322 IDLCLS--PKSNSAVTAIDAALADIRQGSVGDVPDHLRDAHYAGAKELNRGIGYQYPHNF 379 Query: 392 QPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 + QQ L E + ++ + E Sbjct: 380 ENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQEWKQ 423 >UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulfovibrionales RepID=C7LWR1_DESBD Length = 430 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 47/294 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + LA RP++ D +GQ H L + + LF G G GK+++A LLAK Sbjct: 19 RPLAESLRPESLDDFIGQSHFRQRLRTLMQSKDLPSLLLF-GPPGCGKSTVALLLAK--- 74 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKV 122 D + A + R + + ++ Sbjct: 75 -----------------------HADKPFVRVSAPEVGITALRKQIQD---------KEI 102 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE+H S+ + L LE + + +LSR L++L + + Sbjct: 103 LILDELHRYSKAQQDFFLPLLETGELTLIATTTENPSFSVTRQLLSRLHVLRLRSLGMAE 162 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML- 241 + + + + ++L+LLA + G R L+L + A + + + L Sbjct: 163 LVDVGKRGMEKLDSLIPEKSLELLATLSGGDARTMLNLVEFAAGLEEKDLEPDQLKTRLP 222 Query: 242 ---------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 G + A +L++++ ++ + + + G + + ++ Sbjct: 223 EIVLRGDREGDSHYELASALIKSIRGSDPDAALYYLASLVETGEDPRFICRRLI 276 >UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHI5_9BACT Length = 430 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 132/370 (35%), Gaps = 62/370 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ F D GQ H+ L + + +F+G G GKTS+A +++K Sbjct: 10 EPLAATLRPEGFGDFFGQGHLTAEGSLLRRSIENDCFS-SIIFTGPPGTGKTSLASIISK 68 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +A + V + R + A Sbjct: 69 HTEAD-------------------------FIALSAIDSSVSEVRKAVKAADEARKFSGR 103 Query: 121 K-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP--QKLPVTILSRCLQFHLKA 177 K V +DE+H ++ ++LLK +E V+F+ ATT L + SR L F LK Sbjct: 104 KTVLFVDEIHRFNKAQQDSLLKDIEN--GTVRFIGATTHNPGFYLTPALCSRSLIFTLKP 161 Query: 178 LDVEQIRHQLE-------HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGD 229 L+ ++ LE L E + + L+ L+ EG R AL++ + A+ + Sbjct: 162 LEASAVKSLLEAKMTKIMKALEAE-LQFDEEGLKFLSENCEGDARRALTVIELAVKTAQS 220 Query: 230 GQVSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + + L + A + +++M ++ + + + G + + Sbjct: 221 DKIGLEELRECLQVKSYKYDADAHYNAASAFIKSMRGSDPDAAVYWLAYMLEAGEDIRFI 280 Query: 282 LVEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELARTI--PPTDIQLYYQ 330 ++ + + + A+ + A T Y+ Sbjct: 281 ARRIMIFASEDVGNADPRALQLAVSASQAVDIVGMPEARIILSQAVTYCATAPKSNAAYK 340 Query: 331 TLLIGRKELP 340 + + +++ Sbjct: 341 AVNLALEDVK 350 >UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=Sphingopyxis alaskensis RepID=Q1GTQ0_SPHAL Length = 326 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 22/270 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------T 71 ++G + A +G GR+HHA+L +G +G+GK A A+ L Sbjct: 1 MIGHQEAEKAFLDGWQGGRLHHAWLLAGPQGMGKGDFAERAARFLVTHGAGGGRAAVALD 60 Query: 72 PCGVCDNCREIEQGRFVDL---------IEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G R ++ G ++ + A ++ R ++ + + + G ++V Sbjct: 61 DRGDDAAARLVDAGNHPEIIRLTRQPKDKTKELARNITIDQVRQVIRRLHLSLSLGDWRV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D V L NALLKTLEEPP FLL + P +L TI SRC + +D + Sbjct: 121 IIVDAVDDLESDGANALLKTLEEPPARTLFLLVSHSPGRLLPTIRSRCRILRFQPIDRDV 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L + + ++ + A+ G AL+L D +AS ++ A G Sbjct: 181 MVSWLHDL----RPMLDMPEVRAIVAASGGVPGKALALIDSDVASMQKKL---LAIAASG 233 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAA 272 ++ +L + A+ + L+ + Sbjct: 234 DPENRLREALAREVGGASNRARLELVIDIV 263 >UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=C3WFU7_FUSMR Length = 303 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 22/295 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 D++ E V N L L + YLF G+ A AKGL CET CG Sbjct: 2 IRDIISNEEVKEFFRNELKLKKDSGTYLFYGSDMSLLMEFALHFAKGLCCETLE-GDFCG 60 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ C+ I++ + DL +D KV++ R+L + G K+++I ++ + + Sbjct: 61 ECNICKRIDKMLYSDLEILDNPDGLKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKE 120 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR----HQLEHI 190 + NALLK +EEP + F+L T+ + TI SR + +K E++ Sbjct: 121 ASNALLKLIEEPNKGSFFILLNTNL-NILPTIKSRSILVKVKKRTAEELEVDNYTYTFFR 179 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 N E I E L + + S + + A + + + + + Sbjct: 180 GNSEDI--EKYKLLDIDLESGYSYQ------EIGKAIKGYEETKELEYKI------NIYK 225 Query: 251 SLVEAMVEANGERVMALINEAAA--RGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +L + + ++ I A R + E++ + I Sbjct: 226 ALRDFINNREYLKLHEKIFFAEEIVRATSDRNIYREIVSYIVDIMGYLNGLEERL 280 >UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI Length = 876 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 123/328 (37%), Gaps = 70/328 (21%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S+ L+ + RP +D +GQE +L + + +++ G G GKT++A++ Sbjct: 193 SFAPLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELP-SFILYGPPGCGKTTLAQI- 250 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 + ++ + A V+D ++++D + G Sbjct: 251 -----------------------VASKSNYNINALSAVGS-GVKDIKEVIDKARNTLQFG 286 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + + IDE+H ++ + LL +E + + ATT+ +L +LSRC F ++ Sbjct: 287 KKTILFIDEIHRYNKLQQDVLLPAIE--SGIIILIGATTENPSFELNGALLSRCKVFKME 344 Query: 177 ALDVEQIRHQLEHILN------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L E + ++ L + + + A++ LA A+G R A+++ D AI + Sbjct: 345 KLTKENLETLIKRTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANKE 404 Query: 231 QVSTQA-----------VSAML--------------------GTLDDDQALSLVEAMVEA 259 + + + V ++ G + +L +++ + Sbjct: 405 EQTYKERMEEKHSTSGIVRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGS 464 Query: 260 NGERVMALINEAAARGIEWEALLVEMLG 287 + + G E ++ M+ Sbjct: 465 DANATAYWVIRMLESGCEPLYIVRRMVR 492 >UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924838 Length = 260 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 10/231 (4%) Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 C+ I R++ ++E++A+ ++ R+ + N Sbjct: 30 CDNYIDDIFINESWKLRKLHDLYKSRVLELNASDERGIQVIREKVKNFASQSVSSFKVDG 89 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FKV ++DE ++ + AL +T+E + +F L ++ I SRC +F Sbjct: 90 TPCPPFKVVILDEADSMTTSAQAALRRTMERQTKTTRFCLICNYVSRIIEPITSRCAKFR 149 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K L I QL++I E + E AL+ L +++G +R A++ A G++ Sbjct: 150 FKELSSNAIYEQLKYISRMEAVKIEEEALEQLIESSDGDMRKAITYLQSAHRLKLGEIIL 209 Query: 235 -QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + M G + +++A + E++ + G L+ + Sbjct: 210 ANDIFEMTGKVPKTMVADIMKACSSGSFEKLDKQVKLMMTGGYSASQLITQ 260 >UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau subunits n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038309A Length = 451 Score = 132 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 87/401 (21%), Positives = 146/401 (36%), Gaps = 17/401 (4%) Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 + ATT+ +K+PVTILSRC +F L+ ++ + + L+ I E + E AL + RAAEG Sbjct: 1 MFATTEIRKVPVTILSRCQRFDLRRVEADVLSAHLKKICAAEAVEAEDEALAAITRAAEG 60 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 S+RDALSL DQAI+ G G V+ V MLG D + + L EA++ + A + Sbjct: 61 SVRDALSLLDQAISHGAGAVTAAGVRDMLGLADRSRIVDLFEAVMRGDVPAAFAELRAQY 120 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQ 330 G + +L ++ G H + ++L A + + R+R + A +P + +Q Sbjct: 121 DAGADPAVVLSDLAGFTHLVTRLKLVQGAEADPTLSEAERVRGAQFAGRLPVRALSRAWQ 180 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 LL E+ AP EM ++R E ++ + Sbjct: 181 ILLKALPEVQAAPRPLAAAEMAIVRLAYAADLPTPDEALRQLRADIAGSEGGAPPA---- 236 Query: 391 PQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL 450 + P A + + + AA Sbjct: 237 -----------SRPSLGRDGGPGAMLSHGSAALQMAPPPRPALTSVPVTASLPEAAPRPA 285 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 + D + R + +A A ++ A + + A T Sbjct: 286 PAEPDGPRLRRFEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAQGGRATLAND 345 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA 551 A +A W VS+ + + A + NA Sbjct: 346 LARALDAWTGRRWVVAVSKDEGAPTLAENVRQAEQTRHQNA 386 >UniRef50_C8SAL8 AAA ATPase central domain protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SAL8_FERPL Length = 506 Score = 132 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 110/296 (37%), Gaps = 45/296 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIH---HAYLFSGTRGVGKTSIARLLAKGL 62 K+RP+T DVV ++ + + LF+G GVGKTS+A LA Sbjct: 3 WVEKYRPKTIKDVVAPSDIIKTVVTWAENWKRGVKQKPLLFAGPPGVGKTSLALALANTY 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--------- 113 E ++E++A+ + ++ + Sbjct: 63 GWE------------------------VVELNASDQRNWSVIYRIVGEGAFNETLSDEGD 98 Query: 114 --APARGRFKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + G+ K+ ++DEV +S+ +AL+K L+ P +L +P L + Sbjct: 99 FLSSREGKLKLIVLDEVDNISKKEDFGGESALIKILKRNPPQ-PMILIANEPYNLSPELR 157 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 + + + L +Q+ LE I E I + +AL +A A G LR A++ QA+A Sbjct: 158 NLVTMVNFRRLTRDQVVKVLERIAKLEGIEIDKKALYAIADNAGGDLRAAINDL-QAVAE 216 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 G V + V + + +++ + + V + + + Sbjct: 217 GRKVVKAEDVI-VAKRTQETDVFKVMQKIFKTYYSTVYSEAMLLDESPEDLIYWID 271 >UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2D2_9GAMM Length = 308 Score = 132 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 12/260 (4%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVD-- 89 R+ HA L SG +G+GK + A L L C+ CG C +C+ + G D Sbjct: 3 QAQRMPHAILLSGIQGLGKRAFADTLIASLLCQQQTDQFEACGHCHSCQLLAAGSHSDHT 62 Query: 90 -LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + D + KV+ R+L + P K LI ++ ++N+LLK LEEP Sbjct: 63 LITPEDIGKQIKVDQIRELKASQTLMPKVSHGKTVLITHADQMNLSAYNSLLKLLEEPQP 122 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 + +L + + Q+LP+TI SRC + + + E+ LE H+ + Q L + Sbjct: 123 NSVLILISENSQQLPITIKSRCQKIVIATPNEEESLDWLEQQAP----HHDRKTWQSLLK 178 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A G+ AL + ++ + M G + + + + + + VM I Sbjct: 179 LAHGAPLHALDNEEHSLIQSQ-TIIKDIAVLMKGQANP---VQMAANWQQFDLKSVMYQI 234 Query: 269 NEAAARGIEWEALLVEMLGL 288 IE L + Sbjct: 235 QSMMQAKIESLLLADNPASI 254 >UniRef50_P40938 Replication factor C subunit 3 n=106 Tax=Eukaryota RepID=RFC3_HUMAN Length = 356 Score = 132 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 27/310 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + K+RP + + + L N + G H L G G GK + + + Sbjct: 1 MS--LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH-LLVYGPSGAGKKTRIMCILR 57 Query: 61 GLNC--------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 L E TP I +++ DA + +V +++L V Sbjct: 58 ELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRV-VIQEMLKTVA 116 Query: 113 YAP-----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + ++ FKV L+ EV L++ + +AL +T+E+ + +L K+ I Sbjct: 117 QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIR 176 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD----- 222 SRCL + A +E I H L + +E + + LA + +LR AL + + Sbjct: 177 SRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQ 236 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 Q + D ++ L + A ++V V + E I E ++ Sbjct: 237 QYPFTADQEIPETDWEVYL----RETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292 Query: 283 VEML-GLLHR 291 +L LLH Sbjct: 293 KGLLSELLHN 302 >UniRef50_O29072 Replication factor C large subunit n=1 Tax=Archaeoglobus fulgidus RepID=RFCL_ARCFU Length = 479 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 21/284 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP+T +VV + ++T + R L +G GVGKTS+A LA + Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKPLLLAGPPGVGKTSLALALANTMGW 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E + R IE+ I + A + D + L + G+ K+ + Sbjct: 63 EAVELNASDQ--RSWRVIER------IVGEGAFNETISDEGEFL-----SSRIGKLKLII 109 Query: 125 IDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +DEV + + AL++ ++ P +L DP KL + + C + K L Sbjct: 110 LDEVDNIHKKEDVGGEAALIRLIKRKPAQ-PLILIANDPYKLSPELRNLCEMINFKRLTK 168 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ LE I +E I + L +A A G LR A++ QA+A G ++ + V + Sbjct: 169 QQVARVLERIALKEGIKVDKSVLLKIAENAGGDLRAAINDF-QALAEGKEELKPEDVF-L 226 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + +++ + + V + + E Sbjct: 227 TKRTQEKDIFRVMQMIFKTKNPAVYNEAMLLDESPEDVIHWVDE 270 >UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_9MOLU Length = 313 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 125/339 (36%), Gaps = 39/339 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + N S RI HA+L G + LA L C+ C C++CR Sbjct: 9 QPIFYNLIKNEFSQQRIPHAFLLIGNNTNIPLT---YLAMSLICD---ETLACENCNDCR 62 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++++ ++ D+I + K + + D + + G+ K+Y+I+ + ++ + N L Sbjct: 63 KVKENKYSDIIRFNGKDNSIKKGNIELIQDTFKKSSLEGKAKIYIIENIEYATKEAMNTL 122 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP E + + + ++ TILSRC +K E I L Sbjct: 123 LKMLEEPTEGIYAIFTANNASRVLPTILSRCQVIDIKPDSKEVIIGALCQ------DGIT 176 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + +LA A S+ +A +L D+ QV ++ +E + Sbjct: 177 KESAHILAYLAP-SIEEAKTLYDERFEYMQLQV-----------------INFIEDLFLK 218 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 ++ + + L ++ + + V+ + + +R + Sbjct: 219 RANLIINTQTNLLKKYKERDDIKLFLNMLVLAMKDMFHVKHTDD---IVYCEHQEFLRNI 275 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I + + + +L + + M ++ + R Sbjct: 276 --KIDESQLIKQIEIILETIYTIESNANVPMLMDSMMYR 312 >UniRef50_A8TUR1 ATPase involved in DNA replication n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUR1_9PROT Length = 384 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 27/229 (11%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-------------- 62 D++G E + S GR+ HA+L +G G+GK ++A +A+ + Sbjct: 19 DLIGHEAAEALILEAWSSGRMPHAWLIAGPPGIGKATLAYRIARFVLSGGGAGADDSLFG 78 Query: 63 NCETGITATP-CGVCDNCREIEQGRFVDLIEID--------AASRTKVEDTRDLLDNVQY 113 E T+ R + DL + ++ KVE+ R ++++ Sbjct: 79 MSEAPPTSMAIAPDTRVARMVAAESHPDLKILRRQMTDKGTMSAVVKVEEVRAFEASLRF 138 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 A G ++V ++DE ++R++ NALLK LEEPP + LL + + T SRC + Sbjct: 139 KSAEGGWRVAIVDEADRMNRNAENALLKILEEPPVNTLILLISNALNSMLPTTRSRCRRL 198 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 LK L + L + +L R AEGS+ A++L D Sbjct: 199 VLKPLPDPLVLDLLRRA----RPSVNEADASVLVRLAEGSIGRAIALAD 243 >UniRef50_B9QRU5 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QRU5_9RHOB Length = 355 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 21/283 (7%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG---- 67 P ++G T+L + R+HHA++ G +G+GK ++A AK + Sbjct: 22 PHQRNVLIGHGETETSLLDAYRSERLHHAWILGGPKGIGKATLAFRFAKFVLAHPDRFGP 81 Query: 68 -----ITATPCGVCDNCREIEQGRFVDLIE----IDAASRT-----KVEDTRDLLDNVQY 113 + R++ G +++ D + V++ R + Sbjct: 82 QAAMAQDLSVPEDHPVVRQVAAGGHPNILHLRRPWDDKGKRFKTDLPVDEVRRTVSFFGT 141 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 + ++V ++D ++ S NALLK LEEPPE FL+ + P +L TI SRC + Sbjct: 142 TASARAWRVCIVDAADDMNASSANALLKILEEPPERCLFLVLSHAPGRLLPTIRSRCRRL 201 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT-DQAIASGDGQV 232 L L I + L + H + L +AR A+GSLR AL+L +A G Sbjct: 202 DLAPLSETDIANGLRDLAG--HAIPDASGLSEIARTADGSLRAALTLLAGDGLAITQGTR 259 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 + + LV A + + + E G Sbjct: 260 KLAEAGSQMDLKALHALSDLVAARGQTDNWESFQHVAETWLHG 302 >UniRef50_A7INF3 DNA-directed DNA polymerase n=2 Tax=Xanthobacteraceae RepID=A7INF3_XANP2 Length = 347 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 113/300 (37%), Gaps = 27/300 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ A + G V L GR+ HA L G G+GK ++A LA+ + + Sbjct: 20 PRDQARLFGHGVVEADLIGDFRAGRLPHALLIGGPEGIGKATLAYRLARMVLSGGPEAGS 79 Query: 72 PCG----VCDNCREIEQGRFVDL---------IEIDAASRTKVEDTRDLLDNVQYAPARG 118 R++ DL E + E R + A G Sbjct: 80 HSLDLPVTHPVFRQVASQSHPDLLVLHRVPEAGEEKIPTVIPAEMVRRVRSFFGATAAAG 139 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++V ++D V L+ NALLKTLEEPP FLL + P ++ TI SR ++ L Sbjct: 140 GWRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSRTRLLRMRPL 199 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + L+H L EE + L A A+ GS+R A+ L +V + + Sbjct: 200 GSADVLAALDH-LKEEMADLDAATLPSAAEASGGSVRRAIVLAR----GEGMEVRSATLK 254 Query: 239 AM--LGTLDDDQALSLVEAMVEAN-------GERVMALINEAAARGIEWEALLVEMLGLL 289 A+ L + +L + E V + A +G E LV + + Sbjct: 255 ALEQLPRPRPEDLHALGARLQGDRSDGLDLFIEAVSDYVAARATQGDEPRHRLVRLGEVW 314 >UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARJ9_SEBTE Length = 382 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 118/272 (43%), Gaps = 25/272 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 ++ L N + + +YLF G + V A +K CE CGVC+ C+ ++ Sbjct: 11 LIDRLINEAAKDKESASYLFYGDKRVDLLFYALEFSKLFLCENFKDNDYCGVCNVCKSVD 70 Query: 84 QGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 + D+ I+ + K++D R+++ N +P + + KVY+++ V L + S NALLK Sbjct: 71 NYSYPDIEIINKDEQGVKIDDVREIILNAIESPYKAKKKVYILNGVEKLRKESANALLKI 130 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPP+++ F+L + + TI SR + F +K L+ E + E Sbjct: 131 IEEPPKNLYFILLSKSL-NIIPTIKSRVMTFVIKP-------------LDIEALEVEKE- 175 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + +G+++D + GQ+S + + + L E ++ E Sbjct: 176 ---IYYFFDGNVKDIELWKKKKQDLSCGQLSLEEIFRNIEV--YYIYNELTELLMRVQAE 230 Query: 263 RVMALINEAAARGIEWEAL---LVEMLGLLHR 291 ++ E +++ + E+L + Sbjct: 231 KLFNDKKEFM-SKPDFKIFKDYIKELLEIYED 261 >UniRef50_Q1AUM0 DNA polymerase III, delta prime subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUM0_RUBXD Length = 359 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 123/366 (33%), Gaps = 44/366 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F +VG L L L G + HAYLF G GVGK ++AR L A Sbjct: 7 FEGIVGNRAALRLLERALRSGEVSHAYLFHGPEGVGKRTVARRFGAALVAGGDEAALG-- 64 Query: 75 VCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 +G DL E++ T + R++L P G +V+++ L+ Sbjct: 65 ------RALRGLHPDLTEVEPEGAFTTIGQVREVLRLAASRPFEGSRRVFVL-RADTLNL 117 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEP FLL + + TI SR + V ++ L Sbjct: 118 QAANALLKTLEEPEGEAVFLLLAASREAVLPTIASRAQAVRFDPVPVGEVAGFLARRG-- 175 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD------- 246 L A GS+ AL + G++ + A LG L D Sbjct: 176 ------FAEAGLAAALGRGSVGLALRYAGGEL----GELREAVLEAALGPLGDFEDVHRA 225 Query: 247 -DQALSLVEAMVEANGERVMALINE-------------AAARGIEWEALLVEMLGLLHRI 292 + +L E + EA ++ E AAR L + + Sbjct: 226 AGRITALAERVGEAREREALSAAEEPDRAARERARRAGRAARDGAVREALGLLCSVYRD- 284 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A + A A +R + R P D +L Y +E+T Sbjct: 285 AAAVAAGAPELVINADRGEELRRIVRERPGADWAGAAARAGEAALDLSYNVSPEAILEVT 344 Query: 353 LLRALA 358 L Sbjct: 345 LSELRR 350 >UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FA0C Length = 298 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 13/254 (5%) Query: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 + T +HHA L G+GK + LA L C CG C +C Sbjct: 10 EIHTQFMRHAQANTLHHAILLHAKPGMGKHAYVHQLADDLLCHHLKFGHACGQCQSCLLN 69 Query: 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 + D I + + V + R+ L +Q + K+ +I+ ++ + NALLKT Sbjct: 70 QASSHPDRYVIASDKQISVNEIREALTKLQEHAQLRQRKILIIEHADTMTESAANALLKT 129 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + LL +D Q+L TILSRC + L ++ IR L ++ A Sbjct: 130 LEEPSLNTFLLLTVSDIQRLLPTILSRCEKNTLIIPSLDMIRAWLNE-------HYQITA 182 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL-VEAMVEANG 261 L RA + + ++ + D +++ A LG + Q SL + Sbjct: 183 ADDLMRAYQFAPLSIVNAL-----TEDTEMNYNAFKQDLGAIKQGQLNSLEFAQKWHSQA 237 Query: 262 ERVMALINEAAARG 275 + + + + Sbjct: 238 HQSLGWLQLMLQQK 251 >UniRef50_A8MD97 AAA ATPase central domain protein n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MD97_CALMQ Length = 418 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 116/299 (38%), Gaps = 42/299 (14%) Query: 1 MSYQ--VLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIA 55 MS + K+RP++ D+V QE V + + +S G+ A L SG G GKT++ Sbjct: 1 MSTRRLPWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMV 60 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LA E L E++A+ R+ + Sbjct: 61 HALAYDYGLE------------------------LYEMNASDVRTASRIRETIGKALTQG 96 Query: 116 ARGRF--KVYLIDEVHMLSRHSFN----ALLKTLEEPPEHVKFLLATTDPQK-LPVTILS 168 + F K+ L DEV ++ + ++ ++E V + DP + Sbjct: 97 SLFGFRGKLVLFDEVDGINVRADQGGIYEIVDIVKE--AKVPIAMTANDPWDPKLRPLRD 154 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 C+ +K L I L I N E + E AL+L+A ++ G +R A++ + Sbjct: 155 ICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTV--AE 212 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 G V+ + VS + +V+ +++AN + + +WE+ L+ ++ Sbjct: 213 TGPVTRERVSLLSSRAHQYDMFRMVDMVLKANTVASATGVTRLPS--FDWESFLLWLVE 269 >UniRef50_B9TJX7 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJX7_RICCO Length = 342 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 117/350 (33%), Gaps = 36/350 (10%) Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q SP A+ +D + +LA + +QLYYQ ++G +++ APD G MTLLR Sbjct: 26 QYSPQAIADDHPE-RQTLLDLASQLTAEMLQLYYQICILGHRDIGLAPDAYAGFTMTLLR 84 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P +P T + +Q P Sbjct: 85 LLAFKADAMTPSAAPATGGSSPTEGTPRGNAGGNARAALAQSRQMSAASEPIPAIPATPM 144 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 T + K+ A A P A + + + PA + Sbjct: 145 PPATPATPNVTASLKTAAALTPSAEPAPMMAPTVTPANHAVMAD-------QAMPALEHI 197 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSLPK 534 + + PV+ E W A V LS Sbjct: 198 PQQAFSQPVVGSGESAPLAWD------------------------GNWRALVENHLSKLG 233 Query: 535 LVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 LV +A N D+ + L + + +HL + +KL ALS G ++L I+ Sbjct: 234 LVRALAQNCELVSYDDDTMTLRISEAHKHLASANYLEKLNSALSSHFGRRLKLNIITGQE 293 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E QA ++I+ D +Q L + A + SI+P+ Sbjct: 294 AN--TPARQLAVERAELQDQATQAIMDDRFVQGLMQEMGATIVPNSIKPL 341 >UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R5J4_AJECN Length = 366 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Query: 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 K+RP T D V + N L + R+ H L G G GKTS LA+ + Sbjct: 75 EKYRPNTLEDAVPNAPNIDW-TNPLFVQRLPH-LLLYGPPGTGKTSTILALARRIYGV-- 130 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED--TRDLLDNVQYA-PARGRFKVYL 124 N R++ ++E++A+ ++ ++ + G FK+ + Sbjct: 131 ---------KNMRQM-------VLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLII 174 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + AL + +E+ + +F + KL +LSRC +F L E IR Sbjct: 175 LDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIR 234 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 ++ ++ +E + +P A+ L + ++G +R AL++ A Sbjct: 235 VLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHA 276 >UniRef50_Q46HP5 DNA polymerase III, delta prime subunit n=2 Tax=Prochlorococcus marinus RepID=Q46HP5_PROMT Length = 319 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 115/319 (36%), Gaps = 31/319 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++ GQ+ + L + +S I HAYLFSG GVG+ A++ + + Sbjct: 4 FQNIFGQDLAIKILKSAISKEHISHAYLFSGPEGVGRKKTAKIFINSILDKNQE------ 57 Query: 75 VCDNCREIEQGRFVDLIEIDAA-----------------------SRTKVEDTRDLLDNV 111 +I DL+ ++ + + ++ +++++ + Sbjct: 58 KKSTKIKINNNNHPDLLWVEPSYIVQGQSISQTKAILDGISMKSPPQIRLNQIKEIIEFL 117 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 P + +I+++ ++ + NALLKTLEE F+L T P+KL TI SRC Sbjct: 118 GKKPFESERSIVIIEDIERINESAANALLKTLEE-TCTGLFILITQRPEKLLSTIRSRCQ 176 Query: 172 QFHLKALDVEQIRHQLEH-ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+ Q+ ++ + +E +Q L + GS + ++ Sbjct: 177 IVPFIRLNDNQVNKIIKKSEVIQEIDDITSNKIQELIDFSYGSPGRCIVNLQFWLSLSTS 236 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 + A + + + ++ A + +++++ L Sbjct: 237 LRQKLEIQLNNPIELLKLAKEITDELNIEQQLWLIDFQQNRAWIKEKNSNIVIQLEELRK 296 Query: 291 RIAMVQLSPAALGNDMAAI 309 ++ A + I Sbjct: 297 QLLKFVQPRLAWEVTLLEI 315 >UniRef50_Q045U3 DNA replication ATPase n=8 Tax=Lactobacillus RepID=Q045U3_LACGA Length = 285 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 107/289 (37%), Gaps = 26/289 (8%) Query: 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 VGQ+ L + ++ H+YLF + A LA NC P G C+N Sbjct: 7 VGQKQ-TNLLRDAYLNKKVAHSYLFVDPMQKKGLNTAYWLACLFNCL--GENKPDGTCNN 63 Query: 79 CREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 C+ I G D+ + + ++ R L + + +P G+ + ++I+ L+ + Sbjct: 64 CQRILDGNHPDVFLVKLEGKQTLSIDQIRPLKEELAKSPVEGKRRFFIIENAEKLTLAAS 123 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL-KALDVEQIRHQLEHILNEEH 195 NALL LEEP V +L T + ++ T+ SR + + LE+ L +E Sbjct: 124 NALLNLLEEPVAPVVTILITNNENQILPTVKSRTQILNFSDEKIDSKRAQLLEYGLTDEE 183 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT-LDDDQALSLVE 254 I L A+ E S L +Q + V +S++ ++ Sbjct: 184 I----EDLGDTAKLEEESKYLFQELLEQNDLAL---VRVSQISSLATKPASQKFIFYQLK 236 Query: 255 AMVEANGER------------VMALINEAAARGIEWEALLVEMLGLLHR 291 + + ++ ++ A + + L ++ R Sbjct: 237 TLAMKSLAAGEKLRKSAFLLELLMTCDKMRASNVSFHNTLDYLVLSFER 285 >UniRef50_Q01Q28 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q28_SOLUE Length = 342 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 77/363 (21%), Positives = 129/363 (35%), Gaps = 45/363 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGIT 69 F + G V AL ++ R+ LFSG GVGK ++AR L L E Sbjct: 2 FENFWGNTAVTEALEQMIAQQRVSQTLLFSGPEGVGKATLARRLGARLLAHPELIERDDL 61 Query: 70 ATPCG------------VCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYA 114 A P N ++ D + + + TR L D QY Sbjct: 62 ALPENLETIATREKWTAEKRNEDPLQFATHPDFVTFPPDGPLRQISIPQTRRLKDAAQYL 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P +G +++LID V + + N+LLKTLEEPP+H+ ++ + L TI SR + F+ Sbjct: 122 PHKGSRRIFLIDHVDRANDQAANSLLKTLEEPPDHLILIMTAQNAYDLLPTIRSRAVPFY 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L ++R ++ + R + A GS A+S D Sbjct: 182 FAPLAPAEMRAFVK----ARGLDQPERRIA----LAAGSPGIAMS-LDLEAYDKRRAAML 232 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + A G + + E + + E++ E L + LL + M Sbjct: 233 VLLKAAAGAAPFSAWIPIGETIGRSKSEKL--------------ELYLKVLYELLRDLLM 278 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + I + L+ I T I+ + L + + ++ +L Sbjct: 279 LHEGGGEI--RNQDIRRDLEVLSAKIEFTWIRKAVTRVDEVAMLLRRNIQKTIALDALIL 336 Query: 355 RAL 357 Sbjct: 337 ELR 339 >UniRef50_A3UCJ6 DNA polymerase III, delta prime subunit n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCJ6_9RHOB Length = 346 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 21/239 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ET 66 P+ D+ GQ+ L +S GR+HHA++ SG +GVGK S A LA+ L E Sbjct: 18 PRRVYDLFGQDAALNEAEAAISSGRMHHAWMVSGPKGVGKASFAYRLARRLLGARATDEA 77 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPAR 117 G+ + P CR +E D + I VE+ R + + + Sbjct: 78 GLASDPDD--PVCRRLEALSHPDFLLIRRPYNDKTGKLKGEIPVEEARRAPEFFSKSASG 135 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++V ++D L+ +S NALLKTLEEPP+ +L P +L TI SRC + L+A Sbjct: 136 KGWRVCIVDSADELNVNSANALLKTLEEPPQRGLLILIVNTPGRLLPTIRSRCRRLILRA 195 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +E L Q A A+G+ AL+L + + + T Sbjct: 196 PSIEATTQWLMD-----RHQMSADEAQRAAMLAQGAPGRALALAETDAPALMATIDTAL 249 >UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q3_MYCHP Length = 404 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 47/320 (14%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA RP+ D + + + +++F G G GKT+I+ +LA L Sbjct: 5 LANLIRPKILEDFICPQEQKKLFQKIIENNDY-RSFIFYGKPGTGKTTISYILANAL--- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 V+ +AA K + L N K+ +I Sbjct: 61 ---------------------KVNYEYFNAAIENKEDLVHKLKLN----------KILII 89 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE+H L++ + LL LE + KL + SRC + ++ + Sbjct: 90 DEIHRLNKDKQDILLPYLENDLITIYATTTENPYFKLNPALRSRCSIIEITKPTIQDLSS 149 Query: 186 QLEHILNE-EHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML-- 241 L++ + + LA A G R AL+ D + D + S +A+ ++ Sbjct: 150 CLKNACLKTFGVDLNKDIADYLALQANGDFRSALNNLDLIMLIFKDQEFSLEAIKKIIPS 209 Query: 242 --------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 G D + +++ ++ + + G + + Sbjct: 210 IQFSSDESGDNHYDYLSAFHKSLRGSDIDAALYWGFIIIKSGDFDGLFRRMLCASYEDVG 269 Query: 294 MVQLSPAALGNDMAAIELRM 313 M + R+ Sbjct: 270 MANPKLGSEVLSAIECFERI 289 >UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6G5_9BACT Length = 353 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 112/345 (32%), Gaps = 32/345 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 +++ L N R+ HA+L + A +LA+ C PC VC CR+ Sbjct: 12 PALVSHLENARKHHRLAHAFLVHADTERARREFAVVLAQIAACPDSREGRPCTVCRVCRQ 71 Query: 82 IEQGRFVDLIEIDAASRTKVEDT-----------RDLLDNVQYAPARG-RFKVYLIDEVH 129 +EQG + + + + R + G KV +I + Sbjct: 72 LEQGTYSEFYTLSPVGKMYFIKIGERGKPEPNTLRYFEEQFHLTSTGGANRKVGVIYDAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ S NALLKTLEEPP +L T +P L T SRC Q L E Sbjct: 132 RMNDESQNALLKTLEEPPPETLLILTTGNPASLLPTTRSRCQQISLLTNRCEF------D 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E + AL AR G L A + Q I G S G + Sbjct: 186 FAGKEQVFAALGALFFEAR---GDLAKAEAGAAQLIQVASG-----LNSDAGGRTAGEWT 237 Query: 250 LSLVEAMVEANGERVMALINE-----AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 L A + V + + A A E L + ++ + Sbjct: 238 ARLTAAAQTGDPALVKRVEQQAADAAAGAYMKERGQFLTAIQTFCQQVFQLSEGIRFDQL 297 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 I + +L I P + + L + + + + Sbjct: 298 ANPEIFAGI-DLPEKIAPARGAVALREAEELLFTLRFNVNEELAL 341 >UniRef50_A2BL93 Replication factor C large subunit n=3 Tax=Desulfurococcales RepID=RFCL_HYPBU Length = 484 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 117/319 (36%), Gaps = 42/319 (13%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALA---NGLSLGRIH--HAYLFSGTRGVGKTSI 54 MS K+RP+ DVV QE GRI A LF G GVGKTS+ Sbjct: 1 MSDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSL 60 Query: 55 ARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL--LDNVQ 112 A E LIE++A+ + D + + Q Sbjct: 61 VEAAANEYGLE------------------------LIEMNASDFRRKSDIERIAKIAATQ 96 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLK-TLE--EPPEHVKFLLATTDPQKLPVTILSR 169 ++ + K+ L+DEV +S + L LE +H + A + + Sbjct: 97 FSLFGRKRKIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLRDA 156 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L L + L+ I E+I E AL+L+A+ AEG LR A++ QAIA G Sbjct: 157 SLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDL-QAIAEGY 215 Query: 230 GQVSTQAVSAMLGTLDDDQ-ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G V V A+L T D ++ + + + ++++ LL + Sbjct: 216 GVVRVDLVRALLATRDRQYSPWEMLRNLFMSKY--IWQAKRAVTHTDLDYDTLLQWINE- 272 Query: 289 LHRIAMVQLSPAALGNDMA 307 IA+ P + Sbjct: 273 --NIAVQYTHPEDIWRAHE 289 >UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD0_9FIRM Length = 304 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 17/254 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q V L+N L R+ +AYLF G +G K A L A+ + CE C C++C Sbjct: 10 QPVVYQMLSNALKNQRVANAYLFHGPKGSSKLETAILFAQSIICEHTDNDGFACQECESC 69 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGRFKVYLIDEVHMLSRHSFNA 138 + IE +D + + R K +D DL + + ++Y++D + + N+ Sbjct: 70 KRIENEESLDYMIVSN-DRIKKKDIVDLQTFFESTSAGKQNARIYILDHYDKATPDASNS 128 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP E + +L + + TI SRC H E H L +EE+ Sbjct: 129 LLKFLEEPSEGIYGILIADEKSNVLPTIQSRCQAIHF---KPESCEHLLLENTSEEN--- 182 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 ++LA + + A+ L Q++ + + Q + + Sbjct: 183 ----AKMLAE-SGYTYDKAIELLSLPDFEELKQIALEYIE---HASSFSQIEKMQTNVFV 234 Query: 259 ANGERVMALINEAA 272 +R+ + Sbjct: 235 NKSDRMNKDWVQLW 248 >UniRef50_Q31HQ8 DNA polymerase III, delta prime subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HQ8_THICR Length = 325 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 8/205 (3%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI-- 91 G + YL SG G+G + A +A+GL C+T C C +C + Q D Sbjct: 17 SGHLGQGYLLSGAEGIGLSEFAMSMAEGLLCQTN-ALQGCQNCVHCHQFAQATHPDFFQL 75 Query: 92 -EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 ++ ++ R L D + +G +KV LI++V +L+ +FNALLKTLEEPP Sbjct: 76 TVLEDKKEISIDQIRALTDKIYTTSHQGGYKVALIEQVELLNVSAFNALLKTLEEPPAKT 135 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 +L + LP TI+SRC + + E+ L+ L + + +AL+ Sbjct: 136 ILILTSYQTSLLPATIISRCRKIAFASPPREEALAWLQQALPQADMPLLKKALK----IN 191 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQ 235 G A + D+ + Sbjct: 192 WGGPLKAKTWIDEKSFELEAAWQED 216 >UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGH8_PETMO Length = 411 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 107/297 (36%), Gaps = 35/297 (11%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Q L RP+ +V+G E + L + ++ +++ G G GK++I R L Sbjct: 1 MSGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKV-RSFIIYGEPGSGKSTIVRALI 59 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + D+ I A + +D+++ Q + Sbjct: 60 NEI----------------------KDYYDVFSISGAIE-GKKKIKDIIE--QKNNLFTK 94 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ +DE+H L++ + LL ++E + + +LSR L F K L Sbjct: 95 PKLLFVDEIHRLNKAEQDTLLLSVETGELTLIGATTENPAISVNPALLSRVLVFKTKELI 154 Query: 180 VEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + I + + A + L A +R ++L + A +G + + + Sbjct: 155 TDDYEKLFQQIEDYYKDLKITKEARKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLK 214 Query: 239 AMLGT-------LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G + +++M ++ + + + G + + M+ L Sbjct: 215 DFTGYRLTYDKNAKYSFISAYIKSMRGSDVDAALLYLAYMLESGEDPMYIARRMVIL 271 >UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrionales RepID=B7VLY9_VIBSL Length = 321 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 123/346 (35%), Gaps = 38/346 (10%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V + L R ++ + + G+G ++ L L C + CG C +C ++ Sbjct: 11 VWSEWKKSLDAERFPNSVIVNAPEGLGVEALVSQLTDALMCVN-YESEACGFCHSCELMK 69 Query: 84 QGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D I+ V+ R Q + G +V L++ ++ + NALL Sbjct: 70 SGSHPDFHVIEPEKEGKSITVDQVRASNRWAQQSSQLGGLRVILLNPAEAMNESASNALL 129 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP + F+L+T + +L TILSRC QF++ ++ L + Sbjct: 130 KTLEEPASNCIFILSTRNSNRLMPTILSRCQQFNVVCPQLDAGSAWL-------NGEVGK 182 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 Q + + + A ++ DQ + A+ G +D +++ Sbjct: 183 TVPQYILTLNDNAPLKAKAMFDQGGV-------EASTKALDGFVD----------VIKGT 225 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 ++ E + L+++ L H + + G AI + L + Sbjct: 226 QPDMLKFSTELSKDP------LIQLSWLWH--LLSDVQKLHFGLANHAIIPSAKALCEVM 277 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 LLI ++L + E+ ++ L Sbjct: 278 SYQSAYAASNKLLILIEQLKQ--HPGLNTELLIMNWLIATCEETCS 321 >UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN Length = 665 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 105/341 (30%), Gaps = 79/341 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP T D GQ + T L + L I + + G G GKT++A ++A Sbjct: 225 KPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIP-SLILWGPPGCGKTTLAHIIAS 283 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 + +A+ K D RD++ Q R Sbjct: 284 ----------------------NSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKR 321 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + IDE+H ++ + L +E + ++ +LSRC L+ L Sbjct: 322 KTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLP 381 Query: 180 VEQIRHQLEHILNEEHIA------------------------HEPRALQLLARAAEGSLR 215 VE + L +N I E +A+ LA ++G R Sbjct: 382 VEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDAR 441 Query: 216 DALSLTD------------------QAIASGDGQVSTQAVSAML----------GTLDDD 247 L+ Q+ + ++ V L G + Sbjct: 442 AGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYN 501 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +L ++M ++ + + G + + ++ Sbjct: 502 CISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRF 542 >UniRef50_B8GWH2 DNA polymerase III, delta' subunit n=7 Tax=Caulobacteraceae RepID=B8GWH2_CAUCN Length = 336 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 130/348 (37%), Gaps = 37/348 (10%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + GQ A + L GR+HHA+L +G GVGK ++A +A+ L + Sbjct: 8 PRDVYGLDGQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPDPSQ 67 Query: 72 ----PCGVCDNCREIEQGRFVDLIEIDA-------ASRTKVEDTRDLLDNVQYAPARGRF 120 R++ DL+ ++ V++ R L + +PA + Sbjct: 68 GLLGAAPSDVVSRQVAARSHPDLMVLERLTDDGKARKSIPVDEARKLPEFFANSPAVSPY 127 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V +ID L+ ++ NA+LKTLEEPP LL + P KL TI SRC + + A V Sbjct: 128 RVAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRLAIPAPGV 187 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +E + + R + LAR A G+ AL L A + + + Sbjct: 188 AAAAEMVERMAD-----VPHRDAERLARMAHGAPGRALQLA--AAGAIAIDDAANEILRS 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD+ L++ + A G L+ + + + A + Sbjct: 241 LPKLDEGALLAMADTFRGAEGAARFELL-------------MDRLADQVRIFATQVAADG 287 Query: 301 ALGNDMAAIELRMREL------ARTIPPTDIQLYYQTLLIGRKELPYA 342 + L A + +++ + R + A Sbjct: 288 KNSLGLDRWAAAWERLSSWPGEAEAVNLDRADVFWSVISDLRAAVKTA 335 >UniRef50_B7XHX1 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHX1_ENTBH Length = 349 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 120/359 (33%), Gaps = 38/359 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ + + L +L + + +F G+ G K ++ L L Sbjct: 3 WIEKYRPKELNAINTHHDITALLQ-CFTLRTVPN-LIFYGSVGSNKKTLVFSLINSLYKA 60 Query: 66 TGITATPCGVCD---NCREIEQGRFVDLIEIDAASRTKVEDT--RDLLDNVQYA------ 114 + ++ D+I I+ + + ++++ V + Sbjct: 61 YPQFQKITTELQINGSRIDVSYLESNDVILINPSIYKNKDRVVVQNIIKKVAESKPITSF 120 Query: 115 --PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + ++ LID+ L++ + AL T+E+ + K + T+ + I SR L Sbjct: 121 LNSSFHGYRTILIDQAENLTKDAQAALRITMEQYSSYFKIFMICTNINTIIEPIKSRSLL 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + ++ LE I +E L+ +A + G A+SL + + Sbjct: 181 IRCRQFAENELITILETISLKEGYNISLDILKDIAINSNGDCGRAISLLE---------I 231 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 Q V ++ E++ A+++ E + ++ L+ I Sbjct: 232 YCQTVKQAETKKLKMDLMNF----KVEWEEKLDAIVHLIREAKAENMFRIRQL---LYDI 284 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 + + P+ + M + ++ + + L ++ + +E Sbjct: 285 MIWNIEPSLVLLKMHNLMQKVIRTSNK-------QITELALKFQERIYLGTKPIFHLEA 336 >UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacteria RepID=A7NI76_ROSCS Length = 544 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 111/310 (35%), Gaps = 53/310 (17%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ + VGQ+H++ L ++ + + + G G GKT++AR+ Sbjct: 22 PLAARMRPRALDEFVGQDHIVGEGKLLRRAITNDALF-SIILWGPPGSGKTTLARI---- 76 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 I E +A V D R ++ Q + Sbjct: 77 --------------------IADTTHAHF-EQLSAVSAGVADLRRVVKEAQDRLGMFQQR 115 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ +A+L +E+ + ++ + SR F L++L Sbjct: 116 TIVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVNPALRSRARVFVLESLTD 175 Query: 181 EQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS------ 227 EQI ++ L + ++ A L + G R AL+ + A + Sbjct: 176 EQIGVIVDRALTDAERGLGALNVLLAADARGYLINMSNGDARTALNALEAAALAKSPGIG 235 Query: 228 GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G ++ + L G L D +L +++ +++ + + + G + Sbjct: 236 GKRLLTVDDIRDALQSRAVQYDKNGELHYDAISALHKSVRDSDPDAALYWLGRMLDGGED 295 Query: 278 WEALLVEMLG 287 + ++ Sbjct: 296 PLYIARRVVR 305 >UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Pasteurellaceae RepID=HOLB_HAEIN Length = 327 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 103/318 (32%), Gaps = 30/318 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + +A G HHA L G+G S+ LA+ + C PCG C +C ++ Sbjct: 11 IYHQIAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMCVA-QGDKPCGQCHSCHLMQ 69 Query: 84 QGRFVDLIEID--AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 D E+ V+ RD+ + V + KV + L+ + NALLK Sbjct: 70 AHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAERLTEAAANALLK 129 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP + FLL L TI SRC ++L + E L+ E+ Sbjct: 130 TLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLSVPNEEIAFEWLKSKSAVENQEILTA 189 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L G AL + Q +E + + Sbjct: 190 LAMNL-----GRPLLALETLQEGFIEQRKNFLRQFWVFYRRRSP-------LELLPLFDK 237 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 ER + + +L L +L + A + + + + Sbjct: 238 ER--------------YVQQVDWILAFLSDCLKHKLEIDSHRQV-ADLGRGIEQFSDEQT 282 Query: 322 PTDIQLYYQTLLIGRKEL 339 + + + R +L Sbjct: 283 ALGLLQAIKIMQKVRSDL 300 >UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482J4_COLP3 Length = 331 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 130/351 (37%), Gaps = 42/351 (11%) Query: 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----------I 68 + E + L+ + HA + G G G+ ++A+ L + L C+ Sbjct: 4 ICHEKQVQ-LSRQYQQDTLAHAIIIQGIEGAGQGALAKWLIELLICQNPLSTTNAAGTET 62 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDE 127 + CG C C + + D + + + ++T V+D R ++ G+ K LI + Sbjct: 63 ISEACGQCKACLLKKSDNYPDHLLLKSENKTLGVDDIRRGNAFLEKTAHLGKVKTILIPQ 122 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 +++ + NALLKTLEEP + +L T D L TI+SRC + ++ + E + QL Sbjct: 123 AQVMTIAAANALLKTLEEPSANSYIVLITDDLDSLLPTIISRCAVYAIRPMIGEALLAQL 182 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 + + N + A L A + LS +++ + V + Sbjct: 183 K-VSNLGDVQLSSSA--PLTNKANDTAYINLSHL--------PELTDKIVHQEFQVFNQY 231 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L++ ++ E L+++ L L+ +V + L Sbjct: 232 ----LLDYLLHGQSEE--KLLSQIVDNKYSLRWLEKITCNLMREYYLVNATDQTLLLIK- 284 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRA 356 + I + YQ ++ K + +R+ E L+ Sbjct: 285 ----------QKISVQVLNQIYQAIITSNKLIKSYLQANRQFVGEQLLMTI 325 >UniRef50_C8WFU3 DNA-directed DNA polymerase n=4 Tax=Sphingomonadaceae RepID=C8WFU3_ZYMMN Length = 330 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 29/262 (11%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA-RLLAKGLNCETGITAT--- 71 + ++G + + A + GR+HHA+L +G +G+GK A R A L Sbjct: 2 SQLLGHDTAIKAFRHAEDSGRLHHAWLLTGAKGLGKRLFADRAAAWLLANAVNPDIRKNT 61 Query: 72 -------PCGVCDNCREIEQGRFVDL----------IEIDAASRTKVEDTRDLLDNVQYA 114 P G I+ G DL E + A V+ R + Sbjct: 62 ASDSLDIPEGN-PTLSLIKAGSHPDLLRLERLFRDSKEQERARNITVDQVRTIQKLFATT 120 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 PA +V +ID + L R + NALLK LEEPP F L + +L TI SRC Sbjct: 121 PALSFRRVVIIDSIDDLERSAANALLKNLEEPPAGTIFFLISHAAGRLLPTIRSRCRILS 180 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L+ + L H L + L L + ++G+ L +A D + Sbjct: 181 FHLLEDNLVAQILRHHLPD----ITAEELASLVKISQGAAGYGLRFAGLDMAELDNAI-E 235 Query: 235 QAVSAMLGTLDDDQALSLVEAM 256 V G D L +++ Sbjct: 236 NIVK--TGDRDFLLRSKLAQSL 255 >UniRef50_C9DGI4 Gp44 clamp-loader subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI4_9CAUD Length = 327 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 113/295 (38%), Gaps = 41/295 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGT-RGVGKTSIARLLAKGLN 63 V ++WRP +VV T L + + GRI + F G GKT+ A L L Sbjct: 19 VWYQRWRPSNLDNVVLPAGFKTKLLSYVENGRIP-SLCFYSPSPGTGKTTAAWALCNYLG 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAP-ARGRFK 121 + I+A+ VE R +L+ G FK Sbjct: 78 IRP------------------------LFINASMNNDVETIRTRVLEYATTMSLVGGGFK 113 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++DE LS + ++L +E+ +H F++ T K+ +LSRC Q E Sbjct: 114 VVILDEGERLSSTAQDSLKGLMEQVSKHCSFIITTNSKTKIVEPLLSRCDQVDFIYNSDE 173 Query: 182 ------QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 QI + IL E + ++ +L L + R L Q++A G+++ Sbjct: 174 MIEINSQIVRRAMGILEAEGVPYDLNSLVDLVKDCAPDNRKVLVRL-QSLAGQYGEIN-- 230 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 +A L +D +LVE++ + + V E R + + +L L Sbjct: 231 --NAALQRMDSSMVSTLVESLKRKDFKAVNDWCMENYERFGD--DIYGALLKGLR 281 >UniRef50_C3N5N1 Replication factor C large subunit n=12 Tax=Sulfolobaceae RepID=RFCL_SULIA Length = 405 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 114/294 (38%), Gaps = 41/294 (13%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLS---LGRI-HHAYLFSGTRGVGKTSIARLLAKG 61 K+RP++ DV Q+ L + G+ A L G GVGKT++A LA Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHD 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 N E L+E++A+ K++D + + + Y G Sbjct: 64 YNLE------------------------LLEMNASDSRKLQDIKSVAEKASVYGSIFGTR 99 Query: 121 -KVYLIDEVHMLS----RHSFNALLKTLEEPPEHVKFLLATTDPQK-LPVTILSRCLQFH 174 K+ L+DEV ++ + +L+ +E+ ++ DP + ++ Sbjct: 100 GKLILLDEVDGINVREDTGAIQGILELIEKTKYP--LIMTANDPWNPALRELRNKTKMVG 157 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L L +R L+ I E I + AL + +EG R A+++ Q I G G+V+ Sbjct: 158 LNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINML-QGIGEGYGKVTL 216 Query: 235 QAVSAMLGTLDDD-QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 V AM + + + + A N A + I+++ L+ + Sbjct: 217 DLVEAMARRKERELDPFETLRDIFWARY--AWQAKNAATSAQIDYDMLIRWISE 268 >UniRef50_Q3IHC2 Putative DNA polymerase III delta' subunit n=2 Tax=Alteromonadales RepID=Q3IHC2_PSEHT Length = 304 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 9/176 (5%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--------GITATPC 73 + L R HHA LFSG GVGK + A LA L C + C Sbjct: 7 HDIEQRLTQSFKAQRFHHAQLFSGPIGVGKFAFASQLANALLCNNIAEQVAAKKSVLSAC 66 Query: 74 GVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C +C I+ G D + V+D R + D + ++ A+ KV +I+ ++ Sbjct: 67 GQCKSCLLIKAGTHPDKRLTQVDGQSIGVDDIRGISDFMHHSAAQNGNKVAIIENCEKMT 126 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + NALLKTLEEP + +L ++ +LP T+LSRC + +K ++ + LE Sbjct: 127 TAAANALLKTLEEPSQSRFLILTSSQATQLPATVLSRCAKTDVKVTNLALAQQWLE 182 >UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD32_9GAMM Length = 344 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 121/375 (32%), Gaps = 61/375 (16%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + L + + HA L +G+ +GK + + L K L CE C C CR Sbjct: 6 HKKPFAKLKQMIDQNHLPHALLITGSEQMGKFELMQQLVKTLLCEE----ETCDQCVLCR 61 Query: 81 EIEQGR---------------FVDLIEIDA--------ASRTKVEDTRDLLDNVQYAPAR 117 I + + +++ + +++ R + + Sbjct: 62 AISKDNPKQALDDSVLIRRSHYPNMVYCRTEVNDKGVESKNIRIDQIRAFCEALNKTA-- 119 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++ ++ ++ + N+LLKTLEEP E+ +L DP+ LP TILSRC H+ Sbjct: 120 DNLQIGVLFYADQMNISAANSLLKTLEEPRENTLIILLAHDPKNLPATILSRCQSVHIPP 179 Query: 178 LDVEQIRHQL-EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ L + I +H + + L G LS SGDG + Q Sbjct: 180 AYDQETEAWLAQRIGEAQHTDFD---VTQLLEHTHGVPFKVLSEL-----SGDGFIHYQH 231 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 L + +IN+ A+L + +V Sbjct: 232 WQNQL-----------------LDIAAHPLMINQLEDFEGNEVAVLNCLQN------LVI 268 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + + ++ + + + + + ++ ++ L+ Sbjct: 269 EGIRLKTLNHEGGLIELNKVVKGVDSDFLFKLLSDIYHALGLSKTNVNIKLLLDNILIVW 328 Query: 357 LAFHPRMPLPEPEVP 371 P+ P Sbjct: 329 SHITHLKRYPQIINP 343 >UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv2559c/MT2636 n=53 Tax=Bacteria RepID=Y2559_MYCTU Length = 452 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 116/305 (38%), Gaps = 47/305 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP + +VVGQ+H+L L + + + + G G GKT++A L+++ Sbjct: 30 PLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVA-SVILYGPPGSGKTTLAALISQA 88 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 E +A V++ R +++N + A G Sbjct: 89 TGRR-------------------------FEALSALSAGVKEVRAVIENSRKALLHGEQT 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V IDEVH S+ +ALL +E + + +LSR L L+ L E Sbjct: 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 Query: 182 QIRHQLEHILNE-----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-------- 228 R ++ +++ +A P A+ LL + A G R AL+ + A + Sbjct: 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 Query: 229 ----DGQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + V AV G D + ++++ ++ + + + G + + Sbjct: 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 Query: 284 EMLGL 288 ++ L Sbjct: 304 RLMIL 308 >UniRef50_C4V742 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V742_NOSCE Length = 293 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 107/309 (34%), Gaps = 42/309 (13%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RPQ + H+ L N S + L G G GKT+ A LLA Sbjct: 5 WTEKYRPQNISTFESLPHIKNFL-NMSSPNDFPN-LLLYGPPGTGKTTFAHLLA------ 56 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + +E++A+ + RD + Y+ + K ++ Sbjct: 57 ---------------------STNKLELNASDERGINVIRDKIK--SYSQTLKKNKTIIL 93 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE L+ + + L + +E+ + +F+ T K+ + SR ++ + + Sbjct: 94 DECENLTEDAQHCLRRIIED-SVNTRFIFTTNYLSKVISPLKSRLVKLKF----EIRFGN 148 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLGTL 244 L I E++ ++ + L LR ++++ + + + + Sbjct: 149 TLSKIGKAENLTYDEDFYKKLFYKCNCDLRRSINVLQALAPLQSINNNTKNDLIDDIIGI 208 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 ++ +++ + + IN+ G + ++ I ++ A Sbjct: 209 IPEEIFIKFKSITKNSYNS---FINDFLFEGYSVIEFIHQLSDF--EIFNKEILKAKFNL 263 Query: 305 DMAAIELRM 313 + IE ++ Sbjct: 264 LLCEIEEKL 272 >UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D46 Length = 373 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 73/376 (19%), Positives = 117/376 (31%), Gaps = 53/376 (14%) Query: 21 QEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 + L L+ GR HAYLF G G GK AR A L E Sbjct: 10 HPNARATLGAALAPGGRPSHAYLFHGPSGSGKRVAARAFASALLAEGSADPD-----SAR 64 Query: 80 REIEQGRFVDLIEIDAASRTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +E G DL + + ++ + ++ P +V++I+ L + Sbjct: 65 TRVEHGTHPDLTWVTPSGAHEMLVGDIEEPVVAAAAMTPFESARRVFVIERADTLIDQAA 124 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N +LKTLEEP V +L T ++ TI SRC AL EQ+ ++ Sbjct: 125 NKMLKTLEEPAPFVHLVLLTDRLAEVLPTIRSRCQLVRFDALTDEQLAERVGR------H 178 Query: 197 AHEPRALQLLARAAEGSLRDALSLTD----QAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 P + +AR A G AL L A G+ + G+ + L Sbjct: 179 GVAPEQARAVARLALGDGARALELALGDGPALRAGGERFARAALAGEVGGSRPWTELL-- 236 Query: 253 VEAMVEANGERV-----------MALINEAAARGIEWEAL------------------LV 283 A+ GE + +++ + +E E L Sbjct: 237 --AVKRRRGEEAVAELEAKLADELEVVSRRERKRLENEYAERIRRTRRRVETGALDLGLQ 294 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 L A + + A P ++ + + R+ L Sbjct: 295 LSSLWLRDAA-CVAWGTPELVHHTDRTDVLAQDADGRDPQRLRAGVELIEETRRRLRSNV 353 Query: 344 DRRMGVEMTLLRALAF 359 + +E R A Sbjct: 354 TEELALEALAYRLEAL 369 >UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H148_9FIRM Length = 411 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 109/299 (36%), Gaps = 49/299 (16%) Query: 11 RPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 RP+ D +GQEH L + N + GR A F G G GKT++AR++AK + Sbjct: 9 RPERLEDFIGQEHFLKKNALVYNAIKEGRFESAV-FYGPSGTGKTTLARIIAKMQD---- 63 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--QYAPARGRFKVYLI 125 D A+ + + + +L ++ + + Sbjct: 64 ---------------------DSFIQINAADVGISELKKILAEAKDRFYGIISKSTYLYV 102 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL-DVEQIR 184 DE+H ++ ++LL LEE V ++ ILSR + + I Sbjct: 103 DEIHRWNKSQQDSLLSALEEGYIKVIASTTENPFFEINNQILSRIRNIYEFKPLANDDIV 162 Query: 185 HQLEH-----ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAV 237 L+ + I ++ AL L+A + G R AL + S G+ +++ + V Sbjct: 163 KLLKRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIALDTLGFILNSLKGEDRITEEKV 222 Query: 238 SAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + + +L ++M ++ + + + G + + + +L Sbjct: 223 YEITYDRQYMKFNKLDDKYNVFSALHKSMRGSDPDAAVHYLARLLQGGEDVKVIGRRLL 281 >UniRef50_C9M5W8 Replication-associated recombination protein A n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5W8_9BACT Length = 426 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 117/309 (37%), Gaps = 51/309 (16%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ + G +L L L G + L G GVGKT++ RL+ + Sbjct: 7 PLAERMRPRSLDEYRGHSSILAPGAPLRRFLEEGDVPSCIL-YGPPGVGKTALVRLMGRV 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 +L+EI+A S KV + RDL+D GR Sbjct: 66 ------------------------TGRELLEINAVSA-KVSELRDLVDRAADLRRLSGRS 100 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE++ +R +ALL ++E + ++ T+LSR L F + L+ Sbjct: 101 AIAFVDELYHFNRSQQDALLPSVERGEVILVGTTTENPRFEINKTLLSRLLVFEIGPLEK 160 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQA----IASGD 229 E + L+ L + ++ ++ +A +A G R AL+ + SG Sbjct: 161 EDLVEILKSALTDRERGLGELELSASDDVIEAIAASAGGDGRQALTRLEFLSRAIAVSGR 220 Query: 230 GQVSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 + ++ L ++++++ ++ + + + G + Sbjct: 221 RTIEEDDLTKSLPAAFVRHDRRQDDHYAVISAMIKSIRGSDPDAAVYWLARLIEGGEDVR 280 Query: 280 ALLVEMLGL 288 + ++ L Sbjct: 281 FIARRLMIL 289 >UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria RepID=A5V4N3_SPHWW Length = 481 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 60/337 (17%), Positives = 118/337 (35%), Gaps = 53/337 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ADV+GQEH+ + ++ GR+ + + G G GKT+IARLLA Sbjct: 63 PLAERLRPRTLADVIGQEHLTGPEGAIGRMVAAGRLS-SLVLWGPPGTGKTTIARLLADA 121 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + + A + V D + + + G Sbjct: 122 VGLRFAPVS-------------------------AVFSGVADLKKIFAEAREHARIGTRT 156 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H +R ++ L +E+ + +L +LSR L LD Sbjct: 157 LLFVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNAALLSRAQVLILNRLDAA 216 Query: 182 QIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAIA------SGDGQV- 232 + + E + A + L +A+G R L+ + + G++ Sbjct: 217 ALGKLIARAEEIEERALPLTEGAREALVASADGDGRFLLNQAETLFSIAIDHPLEPGELA 276 Query: 233 ----STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 AV + +L +++ ++ + + + G E +L ++ Sbjct: 277 ALLHRRMAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRF 336 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 A+ +A + ++ LA + Sbjct: 337 -----------ASEDIGLADPQALVQCLAAKDAYDFL 362 >UniRef50_D0L216 DNA-directed DNA polymerase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L216_HALNC Length = 361 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 117/329 (35%), Gaps = 46/329 (13%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCDNCRE 81 R+ H L +G G+G ++AR +A L C +T CG C CR Sbjct: 47 DRFLLMHRQDRLPHGLLVTGASGLGSLTLAREMAAYLLCADPVTTPGAERACGQCAACRL 106 Query: 82 IEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 G D+ + +A+ VED R L++ G +V LI++ ++R + N Sbjct: 107 RLAGTHPDIQLLVRDNASKDISVEDIRTLIERFSLTRY-GPLRVALIEQAERMNRSAANG 165 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEPP FL+ + LP TI SR + + I L ++ Sbjct: 166 LLKLLEEPPAGSLFLMTSERADLLPSTIRSRIQRLTMTVPRRAVIVDWLTQ---RYGLST 222 Query: 199 EPRALQLLA---RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 E L R +GS + +T V M Sbjct: 223 EEAELLWFIGDDRLMDGSPP----------SWDWQSPTTAWVRLMT-------------- 258 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++V+ ++ + I+ + L ++ + + V A ++ +++ Sbjct: 259 ----ERDQVLPVVKQWQT--IDRDVLARWLMRIWVEVMRVHSG--LPTEAPAPLQPLIQK 310 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPD 344 LA + ++ LL + + + Sbjct: 311 LAGARSKSHWLKVHRVLLEFLQSARHPLN 339 >UniRef50_Q8SR43 DNA REPLICATION FACTOR C 38kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SR43_ENCCU Length = 354 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 58/334 (17%), Positives = 115/334 (34%), Gaps = 33/334 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP++F +++G+E L +L I H + G G GK ++ L L Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLK-SYTLETIPH-MIVHGRSGHGKKTVLLCLVNHLYGS 60 Query: 66 TGITATPCGVCDN---CREIEQGRFVDLIEIDAASRTKVED--TRDLLDNVQY------- 113 + E+ + +EI + + + ++ + Sbjct: 61 IPEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSM 120 Query: 114 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 R K+ +I L+ + AL +T+E ++ +L + +L I SRC Sbjct: 121 LARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCF 180 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + E + + IL +E+ L + R + G +R AL + + + + Sbjct: 181 FLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNE- 239 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGE---------RVMALINEAAARGIEWEALL 282 ++A A +G D L + + + + I +L Sbjct: 240 --SEAKRAKIGGRDLKLEWELAVMSIAGVVKCNQTSSGLVEIRKTLYMLLNSCIPPRTIL 297 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAA--IELRMR 314 VE+ L + + + L A E R+R Sbjct: 298 VEL---LRNLILGEDFRTFLLLSQHALKYEERIR 328 >UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardnerella vaginalis RepID=D2RB58_GARVA Length = 462 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 64/320 (20%) Query: 4 QVLARKWRPQTFADVVGQEHVLT------ALANGLSLGRI--HHAYLFSGTRGVGKTSIA 55 + LA + RP + DV+GQ H L LAN S G + + + G GVGKT++A Sbjct: 17 RPLAVRMRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLA 76 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA- 114 ++A+ + E +A + V+D R +LD Sbjct: 77 YIVARQ-------------------------SGRVFEELSAVTSGVKDVRAVLDRAHERL 111 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQ 172 + G+ V IDEVH S+ +ALL ++E V F+ ATT+ + +LSR + Sbjct: 112 VSNGQETVLFIDEVHRFSKSQQDALLPSVEN--RDVTFIGATTENPSFSIIKPLLSRSVV 169 Query: 173 FHLKALDVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 L +L VE + +E L E+ + + A+ + R + G R L++ + A + Sbjct: 170 VKLASLSVEDLHTLIERALTSENGLNNQLKIDDDAIDSIIRLSGGDARKTLTILEAAAGA 229 Query: 228 GDGQ-----------VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMA 266 G ++ VS ++ G D + +++M ++ + + Sbjct: 230 VTGDVALQHGKKKPVITDDIVSNVMDTTTVRYDKDGDDHYDVISAFIKSMRGSDVDASLH 289 Query: 267 LINEAAARGIEWEALLVEML 286 + G + + ++ Sbjct: 290 YLARMLRAGEDPRFIARRIM 309 >UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BTX6_9PROT Length = 314 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 125/345 (36%), Gaps = 47/345 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNC 79 Q H +++ + +LF G+G + L K L CE C C +C Sbjct: 7 QYHSSAFISDLIKT----QTHLFVAEEGIGANQLLENLLKKLLCENLTDENKTCNTCPSC 62 Query: 80 REIEQGRFVDLIEIDA-----ASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSR 133 R ++ ID + ++ R+L ++ A + K+ I H L+ Sbjct: 63 R-YLVDEHPNIRLIDKNLELKSDVITIDQIRELSSFIELASTSEHDKKIIFIKNTHYLTS 121 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLK LEEPP + F+L T++ K+ TI SR L + +Q L+ Sbjct: 122 SAANALLKNLEEPPNNTFFILLTSNLHKILPTIRSRATIHKLASPTNKQCEDYLKD---- 177 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 P A++ L AE A+ + + + + S+V Sbjct: 178 ----EHPEAIKFL-DLAERKPFLAIQMAN----------------------NKELINSIV 210 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + +M + A G + + M + +A + + + ++ Sbjct: 211 NIFLRGKSFDMMDVNESLLASG--PQFFVDMMQKWIADLAHFKEF--STVYYYKNLLDQI 266 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + ++ +Y+ L+ R+ ++ + ++ ++ Sbjct: 267 ELISNQLSYKELLNFYKKLIEYRRLSETTINKSIALDNLMIDYKR 311 >UniRef50_D0WK13 Putative DNA polymerase III, delta' subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WK13_9ACTO Length = 460 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 21/245 (8%) Query: 15 FADVVGQEHVLTALANGLSLGR-------------IHHAYLFSGTRGVGKTSIARLLAKG 61 F ++VGQ V L + R + A+L +G G G++ AR A Sbjct: 4 FDELVGQRAVRAQLEKAAAAARELAGKTAVGADSAMAQAWLVTGPPGSGRSVAARAFAAA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C CG C C + +G+ D+ VE TR+L+ +P G + Sbjct: 64 LECTGPEPG--CGQCHACHTVMEGKHPDVESVATHGVFITVERTRELVGRSYVSPGSGPW 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V +I++ + + N LLK +EEPP ++L T + + TI SRC + L Sbjct: 122 RVVVIEDADRMLERTTNVLLKAIEEPPPFTVWMLCTPSSEDVMTTIRSRCREVSLAVPSP 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L P A AA+ + A +L A A+ + ++ Sbjct: 182 QDVADLLVR-----RDGVPPERALDAALAAQSHVGRARALATDAEAARERAYILTETLSI 236 Query: 241 LGTLD 245 G D Sbjct: 237 RGAGD 241 Score = 50.4 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 1/80 (1%) Query: 279 EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 + LV++L L + VQL A + R+ E+A + + R Sbjct: 380 DRALVDLLSLYRDVLTVQL-GADVALVNRDFADRIAEVAASTSAEQSIRRMDAISQARTR 438 Query: 339 LPYAPDRRMGVEMTLLRALA 358 L + +E ++ Sbjct: 439 LAGNVAPLLALEAMMVGLRP 458 >UniRef50_A6D7X6 DNA polymerase III subunit delta' n=1 Tax=Vibrio shilonii AK1 RepID=A6D7X6_9VIBR Length = 318 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 112/331 (33%), Gaps = 35/331 (10%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L + L + A L G+ S+ GL C+ + PCG C C ++ Sbjct: 14 LKDNLERQHVPGAMLIQAKVGLAPESMIERYVAGLMCQND-KSEPCGFCHCCDLLKASGH 72 Query: 88 VDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D+ + K VE R + G ++V +I + ++ + NALLKTLE Sbjct: 73 PDVHYVLPEKDKKSLSVEQIRQANKWALESSQFGHYRVIVIPQADRMNASAANALLKTLE 132 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP F+L+T + + L TI SRC +H+ + + + + + H Sbjct: 133 EPPAQCLFILSTENTKLLLPTIRSRCEVWHVSSPSEQMCIDWVSQEIGKSVPRHS----- 187 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 A+ +ST+ + + + ++G Sbjct: 188 -------------------ALLCHFEPISTRQFVESGQDKEYQALIGAFIGFIRSDGLDT 228 Query: 265 MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 I E L + + + ++LG D+ ++A Sbjct: 229 NEFITTLMKNSSELSTQLNWL-----WLLLSCAQKSSLGIDIRTSLPEASQIAEVYGYES 283 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + Q+L ++L + E+ + Sbjct: 284 LYTHSQSLQSLSEQLR--SFPGLNTELLVAD 312 >UniRef50_A3WR60 DNA polymerase III subunits gamma and tau n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR60_9BRAD Length = 750 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 7/251 (2%) Query: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG- 67 +++PQ+F D++G + + L + R + G +GVGK ++ R+ AK L CE+G Sbjct: 388 RFQPQSFVDIIGHQVAVAGLQQRIRSDRHGAPLVLCGPKGVGKRTLGRIYAKRLLCESGT 447 Query: 68 -ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLI 125 + A+PCG C C+E E ++ +E DA + + + R +LL N+++ + G +V +I Sbjct: 448 NVDASPCGSCPTCKEFETRSPLEFVEFDAGASSAAQYVREELLPNLRFETSIG-RRVVMI 506 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 + LKTLE+ F+ T + L SR + L AL + R Sbjct: 507 TNPDS-NPQLVEVCLKTLEKSSAVNSFIFTVTHVRGLSGAGQSRAEMYRLFALTPLESRR 565 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 E L H+ + L ++ + G L D ++ + V LG Sbjct: 566 LAERFLGSAAYPHDSQVLDVILAESGGLPGRLRELCDCIQSTQSK--TLDEVRKALGLDW 623 Query: 246 DDQALSLVEAM 256 A+ ++ Sbjct: 624 AKAAIGFWRSL 634 >UniRef50_A5WF95 DNA polymerase III, delta prime subunit n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WF95_PSYWF Length = 374 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 118/374 (31%), Gaps = 72/374 (19%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT----PCGVC 76 Q+ L R+ H LF+G +G+GK + L C+ + CG C Sbjct: 16 QQTAWDNLIARYE--RLPHGLLFAGMQGIGKRAFVWRFVAWLLCDNREQPSSQQGACGQC 73 Query: 77 DNCREIEQGRFVDLIEIDAAS----------------------------------RTKVE 102 +C+ + G DL + +S K++ Sbjct: 74 QSCQWLASGTHPDLQVLPISSLPSLEVEAATATKGGKSNTKKASENEAAKASVKLSIKID 133 Query: 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 D R+L + +V +ID ++ + NALLKTLEEP E + LL + P KL Sbjct: 134 DIRELQPFISQGS--SGRRVCVIDYADKMTVAAANALLKTLEEPREGIHLLLISDMPTKL 191 Query: 163 PVTILSRCLQFHLKALDVEQIRHQLEHI--------LNEEHIAHEPRALQLLARAAEGSL 214 TI SR Q + + EQ+ LE+ ++ A + + + G+ Sbjct: 192 LPTIRSRVQQVAMDPMAHEQVVAYLENHVSQHTQNPAQSDNAAPLSEQVAQALKLSNGAP 251 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AL + A G + V L A+ ++ + +++ Sbjct: 252 LAALEMLSSAWYQQRG--TWVKVWLALRAGKRS-------AIAASDYWQKQLSLDDFIKL 302 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 ++ + + L ++ IQ + Sbjct: 303 SE------FMLMDFSRQCLGMPTLQQDLALAQYQSITELK-------LESIQALMTVIED 349 Query: 335 GRKELPYAPDRRMG 348 + + +M Sbjct: 350 VKIACQQNVNDKMA 363 >UniRef50_A0Z287 DNA polymerase III subunit delta n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z287_9GAMM Length = 322 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 19/307 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L L++ ++ HA L +G RG+GKT +A A GL CE PCG C +C+ Sbjct: 18 QHGTLERLSSLEQQEKLPHAILLTGARGLGKTQLAASFATGLLCEAR-GVEPCGSCASCQ 76 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G D I + V+ R + +Q G KV +I+ ++ + N Sbjct: 77 LAGGGAHGDFRWIAPEEGKRAIGVDAIRSAVTFMQQTSGYGSHKVLVIEPAEAMTAAAAN 136 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP +L + +LP T+ SRC +++L L E + Sbjct: 137 ALLKTLEEPPGKALLILVSHRSGELPATVRSRCQRYNLPHPSRSSTLTWL-----AEQTS 191 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA-LSLVEAM 256 + A+ A+ L + + + A+ G LD +A + A+ Sbjct: 192 CSEPVAERAYSLAQAQPLTAVQLIRGEDLASKEAL----IMALDGLLDGSKAGPEALAAL 247 Query: 257 VEANGERVMALINEAAARGI---EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + ++ ++ R I + + +L R +++ A ++ + Sbjct: 248 NGYDLDVILEAALQSVERRIYIADGDRVLK--ADFYRRDKILEWLIANRKGINFGRDVIL 305 Query: 314 RELARTI 320 ELAR + Sbjct: 306 PELARLL 312 >UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba RepID=C4LTC0_ENTHI Length = 611 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 42/272 (15%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 Y LA K RP+ D++GQE +L T + +I + + G G GKT+IA Sbjct: 42 YIPLAEKQRPKNLEDIIGQEDILAIGTPFNTMIKNDKI-QSTILYGPPGCGKTTIA---- 96 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 I + +A+ +K ED + ++++ ++ G Sbjct: 97 ---------------------GIIKNNSKSTFISMSAASSKKEDFKKVINDAKHRKRMGI 135 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKA 177 + +DE+H L+R + L +E + + ATT+ +L ++SRC LK Sbjct: 136 NTILFLDEIHSLNRLQQDTFLPAIE--SGTIILIGATTENPSFELNNALMSRCQLVTLKK 193 Query: 178 LDVEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---G 230 L E + + ++EE I + L +A ++G R AL+ ++ + Sbjct: 194 LTDEDVVKIMRKAIDEEYCNSKIDIDNEGLHFIAAISDGDARSALNTLEKVFVHFNLMSE 253 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 +V ++ G D + L E + + + Sbjct: 254 KVLKNEINEKGGI--DIEVRELEEKVKKGEIK 283 >UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q7R7_FRATN Length = 412 Score = 128 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 124/311 (39%), Gaps = 57/311 (18%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M Y LA + RPQ+ ++VGQEH+L+ L L+ I + + G GVGKTS+AR+ Sbjct: 1 MKYIPLAARIRPQSIDEIVGQEHLLSQHGILTKILAGDGIC-SLVLCGKPGVGKTSLARI 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 I + ++ E+ A V+D + L+ + Q+ + Sbjct: 60 ------------------------IASSKKLEFFELSAVDS-GVKDIKKLITDNQHLDSF 94 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP--QKLPVTILSRCLQFHL 175 V +DE+H ++ + LL +E + + ATT+ L ++SR L Sbjct: 95 ----VLFLDEIHRFNKSQQDILLPYVE--SGKIILIGATTENPTYYLNDALVSRLFILRL 148 Query: 176 KALDVEQIRHQLEH------ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ--AIAS 227 K L + + +E +L + + + +EG R L+L ++ I++ Sbjct: 149 KRLSLVATQKLIEKTLSQDEVLAKHKFKIDDGLYNSMHNYSEGDCRKILNLLERMFLIST 208 Query: 228 GDGQV--STQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARG 275 ++ + + +G +Q + +++ + + + ++ G Sbjct: 209 RGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNG 268 Query: 276 IEWEALLVEML 286 ++ + ML Sbjct: 269 VDPLVIARRML 279 >UniRef50_Q043K3 Helicase subunit of the Holliday junction resolvase related ATPase n=11 Tax=Lactobacillus RepID=Q043K3_LACGA Length = 429 Score = 128 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 129/345 (37%), Gaps = 70/345 (20%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ + VGQ+ ++ L + + + L G G GKTS+A+++A+ Sbjct: 8 KPLADLIRPKDLSQFVGQKDLIEEGRPLYQIIKK-HVPISLLLWGPPGTGKTSLAQIIAR 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + A +++ L + P + Sbjct: 67 EFD----------------------------YPLATFNASIDNKAKLTQIINTYPYQSF- 97 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKAL 178 V LIDE+H ++ + LL LE + + ATT+ + + SRC F KAL Sbjct: 98 -VLLIDEIHRMTTTLQDFLLPYLEN--GRILLIGATTENPIMSIVPAVRSRCQIFEFKAL 154 Query: 179 DVEQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 E I L L E E+I + +A++++A +A+G LR AL+L + A + + Sbjct: 155 SDEDIEQVLIRALKEVFHFKDENI--DRKAVKIIAISADGDLRVALNLLETIHAV-NEDL 211 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S + V + T D + +++ ++ + + + G Sbjct: 212 SVEEVKQFVKGQHFAYDRKATKHYDYLAAYSDSIAGSDTDAALYYLAVLLKNG------- 264 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTD 324 ++ ++ R+ + + +G ++ A I Sbjct: 265 -DLASVVRRLREIPYT--YIGLANPEQATQIVIAANQAEKIGMPK 306 >UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=Vibrio RepID=A7K5T9_VIBSE Length = 320 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 14/252 (5%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V L GL RI A L +G+G + ++ L C+ + CG C +C+ + Sbjct: 11 VWDNLKVGLESDRIPGALLLQSEQGLGIEKLIEFFSQALLCQN-YASEACGFCHSCQLNQ 69 Query: 84 QGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 DL I V+ R Q + +++++I+ ++ + NALL Sbjct: 70 SHNHPDLHWIKPEKEGKAITVDQVRACNRLAQESSQLNGYRLFVIEPADSMNESASNALL 129 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP FLL T + ++L TI SRC + + EQ + ++ Sbjct: 130 KTLEEPGAKCLFLLVTHNQERLLPTIRSRCQHWVVAPPSTEQAMQWMREQGAQQ---VPA 186 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 AL+ GS L + + AM + +++ + Sbjct: 187 YALK----LNMGSPIKTLDALNNGDLDAYLAFERTFIKAM--SSPASDISE-CASLMAKH 239 Query: 261 GERVMALINEAA 272 E+ + Sbjct: 240 SEQSLDWAWYLL 251 >UniRef50_P38251 Replication factor C subunit 5 n=17 Tax=Saccharomycetales RepID=RFC5_YEAST Length = 354 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 129/336 (38%), Gaps = 30/336 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLA 59 MS + K+RP++ + E + L + R + H L G G GK + L Sbjct: 1 MS--LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALL 57 Query: 60 KGLNCET--------GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV 111 + + T + +++ D + ++ ++LL V Sbjct: 58 ESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI-VIQELLKEV 116 Query: 112 QYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 R+K +I+E + L++ + AL +T+E+ ++++ ++ Sbjct: 117 AQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 Query: 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSL 220 + I SRCL A +I L ++ E I E L+ +A+A+ G+LR +L + Sbjct: 177 IIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLM 236 Query: 221 TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE----ANGERVMALINEAAARGI 276 + + + +++ ++ S ++ L +V+ + A++ + A I Sbjct: 237 LES--MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCI 294 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 +L E+ L + + + + + +++ Sbjct: 295 PANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330 >UniRef50_A7VYT2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYT2_9CLOT Length = 266 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 104/316 (32%), Gaps = 65/316 (20%) Query: 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 + HA + G ++A LA+ C G PCGVC +C + G D+ Sbjct: 4 HLSHAMILEGPDPEANLALAEKLAQQAVCTAG-GRRPCGVCRDCVKAAGGSHPDIAVYGG 62 Query: 96 ---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 + VE+ R + D+ P + KVY++D ++ + NALLK LEEPP +V F Sbjct: 63 KGGSRSFHVEEVRQIRDSAAVMPNEAQAKVYILDGADHMTEQAQNALLKVLEEPPSYVIF 122 Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 LL L T+ SR F + E++ E LLA Sbjct: 123 LLTCGAASSLLPTVRSRAQIF---------------RVQKEDNPQTEESEAFLLAE---- 163 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 S+ +A+ A +++ Sbjct: 164 --------------------------------------SMAKAVPSAREYDLVSKTGTLT 185 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + A+L E+ + + + A LA+ + + + + Sbjct: 186 KDKELFRAVLKELALIFRDACALAAGGESQVTASQAAGY----LAQRLTRKKLMALLEAV 241 Query: 333 LIGRKELPYAPDRRMG 348 L + L ++ + Sbjct: 242 LEAQAMLERNVNQTLL 257 >UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTL2_9CLOT Length = 121 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 66/116 (56%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L +RPQT ++VVGQ + L ++ + AYLF+G RG GKTSIAR+LA+ + CE Sbjct: 2 LYTTYRPQTLSEVVGQTENILTLKKQMTQNKFDSAYLFAGHRGTGKTSIARILARSICCE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 PC C +CR + +D +E+DAAS V D ++L++ Y P + K Sbjct: 62 HPTENGPCNHCKSCRSMLNNTAIDFVELDAASNNSVNDIKELINQTMYMPTNLKKK 117 >UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJI8_AYWBP Length = 414 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 126/356 (35%), Gaps = 54/356 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLT----ALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 M + LA RP T D++GQ H++ ++ L + +F G G+GK+S+A+ Sbjct: 1 MFKKPLAFALRPSTITDIIGQSHLINDQNGIISRMLKNNY-ASSLIFYGVPGIGKSSLAQ 59 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 +LA DL ++ + L+ + Sbjct: 60 VLAN----------------------------DLQIKYDIFNAAIDK-KSKLEKIIQQAL 90 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP-VTILSRCLQFHL 175 + + +I+E+H +++ + LL+ LE + F T +P + +I SR L Sbjct: 91 NFKKFILIIEEIHRMNKDRQDILLQYLENGHL-IMFACTTENPYFVINPSIRSRVNIIKL 149 Query: 176 KALDVEQIRHQLEHIL--NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 + + E++ L ++ + + AL L+ + + G LR A+++ + + ++ Sbjct: 150 ERITTEEMLTGLNKLIVNKKLPLNILQDALLLICQLSSGDLRIAINMLELCLHLYPGEEI 209 Query: 233 S----------TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + ++ + +L +++ ++ + + A G + Sbjct: 210 TKKIIKKISSSANLINFKDNDEHHNLKSALQKSIRGSDVDAALHYFARLLASGDHEALIR 269 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 ++ I + ++ +P I L + + E Sbjct: 270 RMLITAYEDIGLANPMIIIHVKTAIDAFRQI-----GLPEGRIPLGLAIIEMCLSE 320 >UniRef50_B1IBA3 DNA polymerase III subunit delta n=36 Tax=Streptococcus RepID=B1IBA3_STRPI Length = 296 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 27/285 (9%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 W+P F V L +++HAYLFSG G +A+ LAK L C + Sbjct: 9 WQPAQFDRFV----------RILEQDQLNHAYLFSG--FFGSLEMAQFLAKSLFCTDKVG 56 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 PC C +C+ IEQ F D+ I ++ K E R+L+ A + +V++I++ Sbjct: 57 VLPCEKCRSCKLIEQEEFPDVTLIKPVNQVIKTERIRELVGQFSQAGIESQQQVFIIEQA 116 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + ++ N+LLK +EEP V T+D +K+ TI SR FH K + + Sbjct: 117 DKMHPNAANSLLKVIEEPQSEVYIFFLTSDEEKMLPTIRSRTQIFHFKKQEE-------K 169 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-----GDGQVSTQAVSAMLGT 243 IL E + + LLA+ ++ S +A L +QA + ++ Sbjct: 170 LILLLEQMGLVKKKATLLAKFSQ-SRAEAEKLANQASFWTLVDESERLLTWLVAKKKESY 228 Query: 244 LDDDQALSLVEAMVEAN-GERVMALINEAAARGIEWEALLVEMLG 287 L + +L + + + R++ ++ + +L ++L Sbjct: 229 LQVAKLANLADDKEKQDQVLRILEVLCGQDLLQVRVRVILQDLLE 273 >UniRef50_Q0W3P4 Replication factor C large subunit n=2 Tax=Euryarchaeota RepID=RFCL_UNCMA Length = 553 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 100/289 (34%), Gaps = 40/289 (13%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP + AD+VG + + AL G A + G GVGKTS A LA + Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMG- 68 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFK 121 D IE++A+ + + A G + Sbjct: 69 -----------------------WDYIELNASDVRTKDAINRIAGPAAMAGTFEGTGGRR 105 Query: 122 VYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + ++DE L + A++ + + V +L D + + LQ +A Sbjct: 106 LVILDEADNLHGNYDRGGEAAIINVIRNASQPV--ILIANDMYAMSKPLRESALQIQFRA 163 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + L + E + +P AL +A LR A++ QA A G GQV+ V Sbjct: 164 ILSTSVAKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDL-QAAAQGSGQVTVADV 221 Query: 238 SAMLGTLD-DDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVE 284 S G D + ++ + N + + + E Sbjct: 222 S--TGDRDVPETIFKVMGMIFRGKNMREALNATYGLDENPEDLIGWVDE 268 >UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria RepID=Q2J818_FRASC Length = 519 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 110/333 (33%), Gaps = 75/333 (22%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T +VVGQ H+L + L + G L G G GKT++A ++++ Sbjct: 52 PLAARLRPRTLDEVVGQRHLLGPGSPLRRLVEGGATTSVVL-WGPPGTGKTTLAHIVSRA 110 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 + A V+D R ++D + G Sbjct: 111 TGRRFRELS-------------------------AVTAGVKDVRAVIDEARETLSTSGAR 145 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDEVH +R +ALL ++E + + +LSR L L+ L Sbjct: 146 TVLFIDEVHRFTRTQQDALLPSVERGWVTLVAATTENPFFSVVSPLLSRSLLLTLEPLTD 205 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQA----------- 224 + IR L L + ++ A + + R A G R AL+ + Sbjct: 206 DDIRGVLTRALRDPRGYDGRLSVSDEAREHVVRLAGGDARRALTTLEAGAEALLEAHECE 265 Query: 225 ----------------------------IASGDGQVSTQAVS-AMLGTLDDDQALSLVEA 255 + + V+ AV G D + +++ Sbjct: 266 SGPGGKAGAGADAGADAEAFVNPRPRLDLDLLERAVNRAAVRYDRSGDQHYDVISAFIKS 325 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGL 288 M + + + + G + + M+ L Sbjct: 326 MRGGDVDAALHYLARMLEAGEDPRFVARRMIIL 358 >UniRef50_A4CAL1 Putative DNA polymerase III delta' subunit n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CAL1_9GAMM Length = 302 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 1/165 (0%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA+ ++HHA L G +G+GK ++A LA L C T CG C +C + Sbjct: 11 QMLADASQNKKLHHALLLQGVQGIGKQTMAVHLAGALLCPNQQNLTACGQCKSCHLLAAQ 70 Query: 86 RFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D + + V++ R + D Q + + KV ++++ +++ + NALLKTLE Sbjct: 71 SHPDYLVLGHEQKTIGVDEVRKIADFCQTSAGQRGAKVVVVNDADLMTTAAANALLKTLE 130 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 EP + +L + ++LP T+LSRC Q L D + + + Sbjct: 131 EPANNRFLILVSAQAERLPATVLSRCSQVTLSVDDAQLVEQWMAE 175 >UniRef50_B6AL71 DNA polymerase III n=2 Tax=Leptospirillum sp. Group II RepID=B6AL71_9BACT Length = 343 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 124/339 (36%), Gaps = 40/339 (11%) Query: 26 TALANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 L L GR I YLF G RG+GK A L ++ L C C +C + Sbjct: 16 DLLQRLLIAGRSVPIPATYLFHGPRGIGKKQAALLWSRLLLCTRPGHPDM-TACPSCAQF 74 Query: 83 EQGR-----FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 ++ D+++I + +++TR LL + AP G + ++DE H+L+ + Sbjct: 75 DKFSPENVHHPDILQISPGEGTSIPIDETRRLLSELSNAPLLGSRRTAILDEAHLLTESA 134 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N+LLKTLE+PPE +L T P L T+LSR + E++ LE H Sbjct: 135 ANSLLKTLEDPPEKTLIILVTPYPDNLLPTLLSRTVSVGFSGRTREEMEESLETFPG--H 192 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 +L + G+ +L + ++ GTL D +SL+ Sbjct: 193 NRMSSAEKNMLLLFSRGAPGQLDALRNSPQWPLFDKLPRALTQPQTGTLFDMDLISLL-- 250 Query: 256 MVEANGERVMALINEAAARGIEWEALLVE-MLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 G L++ M LL + + + + Sbjct: 251 ------------------SGPSGFPFLLDTMESLLLDLYRMDAGDTRTSLPVPSGLRNAV 292 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + D +TL I + +R + VE L Sbjct: 293 SHLKREEFHDRVQRLRTLTI------HNINRSLAVEELL 325 >UniRef50_D1JAL6 Putative replication factor C, large subunit n=1 Tax=uncultured archaeon RepID=D1JAL6_9ARCH Length = 466 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 108/289 (37%), Gaps = 35/289 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLA 59 S + K+RP+ ++VVG E + L N + G + A + G G GKTS A L Sbjct: 4 SSEEWTEKYRPKKLSEVVGNEKAIEEL-NSWADGVAKSKKAVILLGPPGCGKTSAAYAL- 61 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 R ++IE++A+ + R ++ + R Sbjct: 62 -----------------------ASERDWEVIELNASDQRNAGVIRSIVGPASASNTFSR 98 Query: 120 -FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQKLPVTILSRCLQFHLK 176 ++ ++DE + + K + E + +L D + T+L C + + Sbjct: 99 ATRLIILDEADNIHGNEDRGGTKAITEIVKRSTQPIILIANDKLGMGRTLLRNCKLINFQ 158 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + L+ I N E + L ++A+ A G LR A++ +A ++ +A Sbjct: 159 RIKPGTVFRVLKVISNAEGRDIDDEVLLIMAKNANGDLRSAIN---DLLAISMSELKIEA 215 Query: 237 VSAMLGTLD-DDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLV 283 S G D ++ ++++ + + + + + E + Sbjct: 216 GSIATGERDVEEDIFAVLKKIFGGYDMQEALTSLYGLDKTPEESIQWIH 264 >UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LS10_PICSI Length = 721 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 45/244 (18%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S L+ + RP +VVGQ+H+L L + L R+ + +F G G GKT++AR + Sbjct: 203 STAPLSERMRPLLVDEVVGQDHLLGKNCILRSLLECDRVP-SIVFWGPPGTGKTTLARAI 261 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A ++ + A + +++ R++L+ + G Sbjct: 262 ANSVSYRFSSVS-------------------------AVTSGLKEVREVLEEAKRMKKMG 296 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLK 176 + ++ +DEVH ++ +A L +E+ + F+ ATT+ ++ +LSRC L Sbjct: 297 QRTLFFVDEVHRFNKAQQDAFLPVVEDGS--IVFIGATTENPSFEVNNALLSRCRVLTLN 354 Query: 177 ALDVEQIRHQLEHILNEEH------------IAHEPRALQLLARAAEGSLRDALSLTDQA 224 L E IR LE +++ + E A++ L+ A++G R AL++ + A Sbjct: 355 KLQPEHIRKLLERAVSDSDKGLMVSLKGFSAVKVEVEAIEFLSCASDGDARVALNVLEIA 414 Query: 225 IASG 228 ++ Sbjct: 415 ASAA 418 >UniRef50_Q5JHP1 Replication factor C large subunit n=7 Tax=Thermococcaceae RepID=RFCL_PYRKO Length = 499 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 98/292 (33%), Gaps = 39/292 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHH--AYLFSGTRGVGKTSIA 55 M+ K+RP+ +++V QE L + + G A L +G GVGKT+ Sbjct: 1 MTEVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTV 60 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LA E +IE++A+ E + Sbjct: 61 YALANEYGFE------------------------VIELNASDERTYEKIERYVQAAYTMD 96 Query: 116 ARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 G R K+ +DE + + K +++ +++ ++P I ++ Sbjct: 97 ILGKRRKLIFLDEADNIEPSGAREIAKLIDK--ARNPIIMSANHYWEVPREIRNKAQIVE 154 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K L I L IL E + L +A+ A G LR A++ + G Sbjct: 155 YKRLTQRDIIKALVRILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQTVVTGG-----V 209 Query: 235 QAVSAMLGTLDDDQ--ALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + +L D ++ +L + N +R + E + E Sbjct: 210 EDAVEVLAYRDTEKSVFQALAQLFATDNAKRAKLAVLGVDMMPNELLQWIDE 261 >UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase n=8 Tax=Actinobacteridae RepID=Q6A8J0_PROAC Length = 461 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 115/310 (37%), Gaps = 52/310 (16%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ+H+LT L L+ G + G GVGKT+IA +++ Sbjct: 30 PLAVRLRPRTIDEIVGQQHLLTPGSPLRR-LAEGTGAMSVFLWGPPGVGKTTIASVVSHA 88 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 N + A V+D R LD + A G+ Sbjct: 89 TNRRFVEIS-------------------------AVTAGVKDIRRELDTARRQLALGQPT 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +DEVH S+ + LL +E + + +LSR L LK L Sbjct: 124 VLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEA 183 Query: 182 QIRHQLEHIL---------NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD--- 229 + L+ L ++ E A L + A G R AL+ ++A A Sbjct: 184 DVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAG 243 Query: 230 -GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +++Q VS + G D + ++++ ++ + + + G + Sbjct: 244 TDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAGEDP 303 Query: 279 EALLVEMLGL 288 + ++ L Sbjct: 304 RFIARRLIIL 313 >UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase n=8 Tax=Lactobacillus RepID=C2HPK6_LACAC Length = 478 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 123/352 (34%), Gaps = 55/352 (15%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 M++ Q LA RP+T ++VGQ H+L L + I + L G G GKT++A Sbjct: 50 MTFKQPLADLMRPKTLGEMVGQNHLLAKGKPLYQIIKE-HILLSLLLWGPPGCGKTTLAY 108 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 ++++ L +++ L +Q P Sbjct: 109 VMSQTLRLPF----------------------------EKFNASIQNKSQLQKLIQKHPD 140 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFH 174 V L+DE+H L++ + LL LE HV + TT+ + I SRC F Sbjct: 141 ESF--VLLLDEIHRLTKPIQDYLLPYLEN--GHVLLVGTTTENPIMSIQPAIRSRCQIFE 196 Query: 175 LKALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + E I L E + + +A + G +R +L++ D A +S Sbjct: 197 FYPIKAEDIELVLIKAAEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNIS 256 Query: 234 TQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + T D + +++ ++ + + + G L Sbjct: 257 MANIEEFARNQHFAFDKDATKHYDYLSAFQDSIEGSDADAALYYLAVILKSGD-----LE 311 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 ++ L +A + + A I L L +P L T+L+ Sbjct: 312 SVVRRLKDLAALDVGLADSARVAQVITLANTALEIGLPRASTHLAMATILLA 363 >UniRef50_O94697 Replication factor C subunit 5 n=2 Tax=Schizosaccharomyces RepID=RFC5_SCHPO Length = 358 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 109/301 (36%), Gaps = 18/301 (5%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 ++RP+T A + + + L + S H L G G GK + + + L Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPH-LLVYGPSGAGKKTRVVAILRELYGP 61 Query: 66 TGITATPCGV-----CDNCREIEQGRFVDLIEIDAASRTKVED--TRDLLDNVQYAPARG 118 +I + +EI + + ++LL +V + Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121 Query: 119 -----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FKV +I+ L+R + AL +T+E+ +++ +L K+ I SR L Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + A E+I + IL + + L +A + +LR A+ L + A G Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241 Query: 234 TQAVSAMLGTLDDDQALS-----LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 A L D + +++ A V +++ + + I +L E+L Sbjct: 242 LIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF 301 Query: 289 L 289 Sbjct: 302 F 302 >UniRef50_B3QKH2 DNA polymerase III subunit delta' n=14 Tax=Bradyrhizobiaceae RepID=B3QKH2_RHOPT Length = 351 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 116/280 (41%), Gaps = 22/280 (7%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ ++ G AL + GRI HA+L G +G+GK ++A +A+ + + Sbjct: 20 PRETTELYGHHAAEQALLDAYRGGRIAHAWLIGGAQGIGKATLAYRMARFVLTHREPQSD 79 Query: 72 PCGVCDN---------CREIEQGRFVDLIEIDAASR--------TKVEDTRDLLDNVQYA 114 + R I L+ ++ + V+++R+ + Sbjct: 80 AVQSAASLAIDPDHPVARHIAAEAHGGLLTLERSVNDKGVLRNVITVDESRETISFFGAT 139 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 A ++V ++D V L+ +S NALLK +EEPP+ FLL + P ++ TI SRC + Sbjct: 140 AAIDGWRVCIVDTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARVLPTIQSRCRKLM 199 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L+ L + + + + L A A+EGS+ AL L + +T Sbjct: 200 LRPLATADVIA---AAADAAGVERDDPQLGEAAAASEGSVARALMLMGGGALTLQQ--TT 254 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A+ L +D +L +A+ + + A ++ Sbjct: 255 TALLDSLPNVDPRALHALGDAIGGTDRATLAAFVDGVDRW 294 >UniRef50_A5IBP2 DNA polymerase III, delta prime subunit n=5 Tax=Legionella RepID=A5IBP2_LEGPC Length = 301 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 64/343 (18%), Positives = 112/343 (32%), Gaps = 53/343 (15%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + QE + L++ RI A LF G+ G + K L C+ PC C Sbjct: 2 ITYQEQ-WQKMQMALAIRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQN-EPCLTCM 59 Query: 78 NCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 +C+ IE+ D+ I K++ R L P R K +I+ ++ Sbjct: 60 DCQMIERFEHPDVEWIKPERSGGIIKIDQIRGLQSTAFLTPQRTNHKFIIIESAESMNIA 119 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK LEEP +H F+L +P T+LSRC D + L Sbjct: 120 ASNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQITQFAVFDELPCNNLL------- 172 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + + + S M+ + L+ Sbjct: 173 --------------------------------ALGEYYTRELNSTMVFKHSESILEGLIA 200 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + +A E A L + L ++ + L A + ++ Sbjct: 201 IIERREHPCTLAAQWIQ----HELSAFLWFLYLLYSQLQYMHLFRVA---YSGTLTKQLN 253 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRR--MGVEMTLLR 355 +L+ + P I + ++L + + + +E L Sbjct: 254 KLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFS 296 >UniRef50_Q12AK7 DNA-directed DNA polymerase n=5 Tax=Comamonadaceae RepID=Q12AK7_POLSJ Length = 379 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 76/371 (20%), Positives = 129/371 (34%), Gaps = 71/371 (19%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 T L + L+ HA+L SG G+G+ +A+ LA+ CE CG C +C ++ Sbjct: 25 TQLESLLAQR--GHAWLLSGPSGLGQFDLAQALARAWLCEQPTPQGACGHCGSCHAVDVH 82 Query: 86 RFVDLI--------------------------EIDAASRTKVEDTRDLLDNVQYAPARGR 119 DL + + KV+ R+ + Q+ +RG Sbjct: 83 THADLCLLVPETLSLALGWPLDEKTQDELDSKKRKPSKEIKVDAAREAVSFTQFTRSRGT 142 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KV L+ ++ + N LLKTLEEPP VKF+LAT +L TI SRCL + D Sbjct: 143 TKVVLVFPAERMNHITANTLLKTLEEPPGPVKFILATDAAHQLLPTIRSRCLGHTMLWPD 202 Query: 180 VEQIRHQLEHILNEEH-------------IAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 Q L+ + E LQ L AA G DAL+ + Sbjct: 203 FAQASAWLQQEAASPGEGESNPKKGGPAAVPPEAADLQTLLVAAGGRPADALAWAQNSAP 262 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + L +AM + + ++ + Sbjct: 263 GEAAR----------------HWQGLPKAMARGDASVLADW---------SPAQVVDALQ 297 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRE-----LARTIPPTDIQLYYQTLLIGRKELPY 341 L H + V++ + + + + AR + + + L + + + + Sbjct: 298 KLCHDVLAVRMGASPRFFNAKDLPEPVAGKPGSPPARVPGLYALASWSRELAVTARTVEH 357 Query: 342 APDRRMGVEMT 352 + + +E Sbjct: 358 PYNPGLMLESL 368 >UniRef50_C2BUI4 DNA polymerase III, delta prime subunit n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUI4_9ACTO Length = 438 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 63/369 (17%), Positives = 125/369 (33%), Gaps = 55/369 (14%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + H++L G G G+++ A+ A L CE CG+C CR++ QG D+ + Sbjct: 67 MTHSWLVVGPPGSGRSTAAKAFAAALECEDTDNPG-CGICPACRDVRQGTHADVSVLTTE 125 Query: 97 S-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 K +D + L+ P RG + + +I++ +S +S N LLK++EEPPE ++L Sbjct: 126 MVEIKFDDVKALVQQAYRRPVRGEWNIIIIEDYDRMSEYSSNLLLKSIEEPPERTVWVLC 185 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 + TI SR L + L + + P +A AAE + Sbjct: 186 APSAADVLSTIRSRTRLVQLSLPSPAAVAELLVR----QDASISPELAAEVAAAAESHVG 241 Query: 216 DALSLTDQAIASGDG------------------------QVSTQAVSAMLGTLDDDQALS 251 A +L + + ++ + + G D ++ Sbjct: 242 RARALAYEPQLREERLGMLRMISQMHTTVEAMWTAAALVKLVDKQAETLRGANDREERAK 301 Query: 252 LVEAMV----------EANGERVMALI---------NEAAARGIEWEALLVEMLGLLHRI 292 ++EA + + + A W+ +L ++ G + Sbjct: 302 VLEAFGLAADTPDSRLPRDVKSALRGAKLSETDAHRRARRASFDTWDRVLGDISGFYRDV 361 Query: 293 AMVQLS-PAALGNDMAAIELRMRELARTI-----PPTDIQLYYQTLLIGRKELPYAPDRR 346 + Q+ N + + + + R+ L + Sbjct: 362 MLAQVGSAQPRINLSRPAGELIDAYVARVGIGPQSLAQTTSRLEAIRKARRRLMGNGNIA 421 Query: 347 MGVEMTLLR 355 + +E + Sbjct: 422 LDIEALCVE 430 >UniRef50_A5EXC7 DNA polymerase III, delta' subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXC7_DICNV Length = 316 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 97/316 (30%), Gaps = 36/316 (11%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 + H LF + A+L A + C C C +C IE+G D Sbjct: 18 TKQPPHCLLFIDPQQQNAFFTAQLFAAAVLCFHAHQGIACHDCQSCHLIERGTHPDAFFY 77 Query: 94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 K+E+ R L+ PA +V + ++ S + N LLKTLEEP H F+ Sbjct: 78 PQP--IKIEEIRALITKTTMTPALSARRVVFLGQIDDYSEEALNTLLKTLEEPSPHSLFI 135 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 L+ + + TI+SR L E L+ E A R + Sbjct: 136 LSARNRHAVKATIISRAHCISLVKPRFEDALAWLQEQGFSEK------AATAALRYSHHD 189 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 A ++ ++ ++ + A Sbjct: 190 PYRAAQYLKNESFRPFELLTL--------------LADFF--AYPQEYCALLEVLEKIPA 233 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 E ++ + L ++ + L LA + P D+ ++ Sbjct: 234 -----EHIVDVLTVHLEQLI----TIKQLDIVPPDWHN--LRLAERLKPADLANMHRVYA 282 Query: 334 IGRKELPYAPDRRMGV 349 +L R++ + Sbjct: 283 KLC-QLRRPNQRQLNL 297 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enter... 468 e-130 UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 T... 446 e-123 UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymera... 441 e-122 UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase... 419 e-115 UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymera... 416 e-114 UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Ta... 413 e-114 UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 T... 413 e-113 UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=ce... 411 e-113 UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 T... 410 e-113 UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxaloba... 408 e-112 UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax... 408 e-112 UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fi... 407 e-112 UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pa... 406 e-111 UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 T... 401 e-110 UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, puta... 397 e-109 UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Ba... 396 e-108 UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 T... 396 e-108 UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseria... 396 e-108 UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 T... 396 e-108 UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, puta... 395 e-108 UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionac... 394 e-108 UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Ta... 391 e-107 UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bactero... 388 e-106 UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 387 e-106 UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Ba... 385 e-105 UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Ta... 384 e-105 UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 ... 382 e-104 UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase... 381 e-104 UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 T... 380 e-104 UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 T... 379 e-103 UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Ta... 375 e-102 UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 T... 375 e-102 UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Ta... 374 e-102 UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicr... 373 e-101 UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 T... 372 e-101 UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 T... 370 e-101 UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 370 e-100 UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 T... 370 e-100 UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 T... 369 e-100 UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Ta... 367 e-99 UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Ta... 366 1e-99 UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 366 1e-99 UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetell... 365 4e-99 UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Ta... 365 4e-99 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 364 5e-99 UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Sl... 364 5e-99 UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 T... 364 6e-99 UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 T... 363 1e-98 UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propion... 362 2e-98 UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 T... 362 3e-98 UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 T... 361 4e-98 UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candida... 360 8e-98 UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 T... 359 2e-97 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 359 2e-97 UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA ... 358 3e-97 UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 T... 358 3e-97 UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 T... 358 5e-97 UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=roo... 357 6e-97 UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 T... 357 6e-97 UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax... 357 7e-97 UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 T... 357 9e-97 UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 ... 356 2e-96 UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Ta... 355 3e-96 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 355 4e-96 UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Ta... 355 4e-96 UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Ta... 355 4e-96 UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunit... 354 6e-96 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 353 8e-96 UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Ta... 353 1e-95 UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 T... 352 3e-95 UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 T... 352 3e-95 UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=ce... 351 4e-95 UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2... 351 5e-95 UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 T... 351 6e-95 UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 T... 351 6e-95 UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 T... 350 7e-95 UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderi... 350 8e-95 UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 T... 350 8e-95 UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=D... 350 9e-95 UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Ta... 350 9e-95 UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 T... 350 1e-94 UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, puta... 350 1e-94 UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Ba... 350 1e-94 UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 T... 349 2e-94 UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Co... 348 3e-94 UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibriona... 348 4e-94 UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 T... 348 4e-94 UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 T... 348 5e-94 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 347 6e-94 UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 T... 347 1e-93 UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79... 346 1e-93 UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 T... 346 1e-93 UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 T... 346 2e-93 UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Co... 346 2e-93 UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pas... 345 2e-93 UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Ba... 345 2e-93 UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, puta... 345 3e-93 UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 ... 345 3e-93 UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 T... 345 3e-93 UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bac... 345 3e-93 UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 345 3e-93 UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 T... 345 4e-93 UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Pl... 345 4e-93 UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 T... 345 4e-93 UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 T... 345 5e-93 UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 T... 345 5e-93 UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clo... 344 7e-93 UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subuni... 343 9e-93 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 343 1e-92 UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Ta... 343 1e-92 UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 343 1e-92 UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 ... 343 1e-92 UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 T... 342 2e-92 UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau... 342 2e-92 UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 T... 342 2e-92 UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W... 341 3e-92 UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lys... 341 4e-92 UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Ba... 341 4e-92 UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 T... 341 4e-92 UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Ta... 341 5e-92 UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Strept... 341 5e-92 UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella a... 341 7e-92 UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Ta... 340 8e-92 UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Ta... 340 9e-92 UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 ... 340 9e-92 UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 340 1e-91 UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 T... 340 1e-91 UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Be... 340 1e-91 UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 T... 340 1e-91 UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymera... 340 2e-91 UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 339 2e-91 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 339 2e-91 UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Ha... 338 4e-91 UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteob... 338 4e-91 UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus Rep... 338 5e-91 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 337 6e-91 UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, puta... 337 7e-91 UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase... 337 8e-91 UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotro... 336 2e-90 UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 336 2e-90 UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and ta... 336 2e-90 UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 T... 335 3e-90 UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=P... 335 3e-90 UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 335 4e-90 UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 T... 335 4e-90 UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma ... 335 5e-90 UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 T... 335 5e-90 UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter s... 334 6e-90 UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 T... 334 7e-90 UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Ta... 334 7e-90 UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Ta... 334 7e-90 UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 333 1e-89 UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Ato... 333 1e-89 UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 T... 333 1e-89 UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Ta... 333 2e-89 UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteri... 333 2e-89 UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 T... 332 2e-89 UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 T... 332 2e-89 UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 T... 332 2e-89 UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 T... 332 3e-89 UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 T... 332 3e-89 UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 T... 332 3e-89 UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase... 332 3e-89 UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax... 331 4e-89 UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 T... 331 4e-89 UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 T... 331 4e-89 UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragm... 331 5e-89 UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 T... 331 6e-89 UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 T... 331 6e-89 UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Ta... 331 6e-89 UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 T... 331 7e-89 UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Mic... 330 8e-89 UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 T... 330 9e-89 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 330 1e-88 UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 T... 330 1e-88 UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 T... 330 1e-88 UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 T... 330 1e-88 UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Ta... 330 1e-88 UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Ta... 329 2e-88 UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 T... 329 2e-88 UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Ta... 329 2e-88 UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collins... 329 2e-88 UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 T... 329 2e-88 UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfo... 329 3e-88 UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunit... 328 3e-88 UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobac... 328 3e-88 UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax... 328 3e-88 UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 T... 328 3e-88 UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymera... 328 4e-88 UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n... 328 5e-88 UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau... 328 6e-88 UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 T... 328 6e-88 UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 T... 327 6e-88 UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdema... 327 7e-88 UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 ... 327 1e-87 UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostri... 326 1e-87 UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacill... 326 1e-87 UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 ... 326 1e-87 UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA ... 326 1e-87 UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 T... 326 2e-87 UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacter... 326 2e-87 UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 T... 325 3e-87 UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 T... 325 3e-87 UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match)... 325 4e-87 UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 T... 325 4e-87 UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 T... 325 4e-87 UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptospora... 325 5e-87 UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, puta... 324 5e-87 UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymera... 324 7e-87 UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Ba... 324 7e-87 UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsi... 324 8e-87 UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 T... 324 9e-87 UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 T... 323 9e-87 UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mob... 323 1e-86 UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiob... 323 1e-86 UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Ta... 323 1e-86 UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 T... 323 2e-86 UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacte... 323 2e-86 UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 323 2e-86 UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY 323 2e-86 UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits ... 322 3e-86 UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Me... 321 3e-86 UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 T... 321 4e-86 UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits... 321 4e-86 UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 T... 321 6e-86 UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Ta... 321 7e-86 UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=The... 320 8e-86 UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenel... 320 8e-86 UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau ... 320 9e-86 UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Mi... 320 9e-86 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 320 1e-85 UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Ta... 320 1e-85 UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacte... 320 1e-85 UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 T... 320 1e-85 UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonel... 320 2e-85 UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1... 320 2e-85 UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 T... 319 2e-85 UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Ana... 319 2e-85 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 319 2e-85 UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymera... 319 2e-85 UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobac... 318 3e-85 UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 ... 318 4e-85 UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Ta... 318 4e-85 UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydroba... 318 4e-85 UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 T... 318 5e-85 UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcu... 318 5e-85 UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Ta... 317 7e-85 UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alp... 317 7e-85 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 317 7e-85 UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 T... 317 7e-85 UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Ta... 317 8e-85 UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 T... 317 1e-84 UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 T... 317 1e-84 UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 T... 317 1e-84 UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 316 2e-84 UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 T... 316 2e-84 UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners D... 315 2e-84 UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimo... 315 3e-84 UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 T... 315 3e-84 UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bac... 315 3e-84 UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerof... 315 3e-84 UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau sub... 315 3e-84 UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax... 315 4e-84 UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ru... 315 4e-84 UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax... 315 5e-84 UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 T... 315 5e-84 UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 ... 314 7e-84 UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 T... 314 7e-84 UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 T... 314 7e-84 UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 ... 314 8e-84 UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 T... 314 8e-84 UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 T... 314 9e-84 UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Cox... 313 1e-83 UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 T... 313 1e-83 UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinom... 313 1e-83 UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 T... 313 2e-83 UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 T... 313 2e-83 UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 T... 313 2e-83 UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium... 312 3e-83 UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 T... 311 4e-83 UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 311 4e-83 UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bif... 311 4e-83 UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 T... 311 5e-83 UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=R... 311 5e-83 UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Ta... 311 6e-83 UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanoba... 311 7e-83 UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=L... 310 8e-83 UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 T... 310 1e-82 UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 T... 310 1e-82 UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 T... 310 2e-82 UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 T... 309 2e-82 UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Br... 309 3e-82 UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Ta... 309 3e-82 UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 308 3e-82 UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bif... 308 3e-82 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 308 4e-82 UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=P... 308 5e-82 UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 T... 307 7e-82 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 307 7e-82 UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Ta... 307 1e-81 UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 T... 307 1e-81 UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinob... 307 1e-81 UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 T... 306 1e-81 UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Ac... 306 2e-81 UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=St... 305 3e-81 UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 T... 305 3e-81 UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 T... 305 4e-81 UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 T... 305 4e-81 UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=un... 305 4e-81 UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococca... 305 4e-81 UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bactero... 304 6e-81 UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Lep... 304 7e-81 UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 T... 304 7e-81 UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=The... 304 9e-81 UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=be... 304 9e-81 UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptosp... 304 9e-81 UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidob... 303 1e-80 UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 T... 303 1e-80 UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=c... 303 2e-80 UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 T... 302 3e-80 UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 ... 302 3e-80 UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau sub... 302 3e-80 UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campyloba... 301 5e-80 UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 ... 300 9e-80 UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 T... 300 1e-79 UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 T... 300 1e-79 UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Ta... 299 2e-79 UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Entero... 299 2e-79 UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax... 299 2e-79 UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Ta... 299 2e-79 UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax... 299 2e-79 UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Ca... 299 2e-79 UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia ... 299 2e-79 UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonp... 299 2e-79 UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 T... 299 2e-79 UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 T... 299 3e-79 UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella... 298 4e-79 UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 T... 298 5e-79 UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 298 6e-79 UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasm... 297 8e-79 UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax... 297 1e-78 UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 T... 296 1e-78 UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and t... 296 2e-78 UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Ta... 295 3e-78 UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gem... 295 3e-78 UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 T... 295 3e-78 UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 T... 295 4e-78 UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 T... 295 4e-78 UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau... 294 5e-78 UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium Rep... 294 6e-78 UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 ... 294 7e-78 UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 T... 294 9e-78 UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=... 294 9e-78 UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 T... 293 1e-77 UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=L... 293 1e-77 UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 T... 293 1e-77 UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 T... 293 1e-77 UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=P... 293 1e-77 UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n... 293 1e-77 UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 T... 293 2e-77 UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X ph... 293 2e-77 UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Ta... 293 2e-77 UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=S... 292 2e-77 UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=... 292 3e-77 UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax... 291 5e-77 UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaul... 291 6e-77 UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=My... 291 8e-77 UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Ca... 290 1e-76 UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Ta... 290 1e-76 UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=My... 288 4e-76 UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax... 288 6e-76 UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 T... 288 6e-76 UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=W... 288 6e-76 UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa ... 287 9e-76 UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylob... 287 1e-75 UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Ch... 286 2e-75 UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 T... 286 2e-75 UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Ta... 286 2e-75 UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Ta... 285 4e-75 UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 T... 285 4e-75 UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Le... 285 4e-75 UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 T... 284 6e-75 UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 T... 284 7e-75 UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 ... 284 7e-75 UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alp... 284 7e-75 UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax... 284 9e-75 UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4... 283 2e-74 UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 T... 283 2e-74 UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanoth... 283 2e-74 UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 T... 283 2e-74 UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 T... 283 2e-74 UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Ta... 282 2e-74 UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Ta... 282 3e-74 UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and ta... 281 5e-74 UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Ta... 281 6e-74 UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinom... 281 6e-74 UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Cor... 281 8e-74 UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 T... 281 8e-74 UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 ... 281 8e-74 UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax... 280 9e-74 UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Le... 280 1e-73 UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 T... 279 3e-73 UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax... 279 3e-73 UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=... 278 4e-73 UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 T... 278 4e-73 UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fu... 277 1e-72 UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clo... 276 2e-72 UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=... 276 2e-72 UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 T... 274 5e-72 UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, s... 274 5e-72 UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicob... 274 5e-72 UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicob... 273 2e-71 UniRef50_B3TCV4 Putative ATPase family associated with various c... 273 2e-71 UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 272 3e-71 UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 T... 272 3e-71 UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 271 7e-71 UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 271 7e-71 UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 270 1e-70 UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 T... 270 1e-70 UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau... 269 2e-70 UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana R... 268 4e-70 UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR 268 4e-70 UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=My... 268 4e-70 UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 T... 268 4e-70 UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buc... 266 2e-69 UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicob... 265 3e-69 UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 T... 261 4e-68 UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Myc... 261 9e-68 UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oe... 259 2e-67 UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and ... 258 5e-67 UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR 256 2e-66 UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 T... 256 2e-66 UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=... 255 4e-66 UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I... 252 2e-65 UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=... 249 2e-64 UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, s... 247 1e-63 UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Ta... 246 2e-63 UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae... 246 2e-63 UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidop... 245 3e-63 UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, s... 245 3e-63 UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomo... 245 4e-63 UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabido... 244 7e-63 UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 T... 244 7e-63 UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF... 243 2e-62 UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostri... 242 3e-62 UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 T... 241 5e-62 UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 241 7e-62 UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MV... 239 4e-61 UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1... 232 4e-59 UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau su... 231 7e-59 UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostri... 227 9e-58 UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n... 224 6e-57 UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=... 224 1e-56 UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultu... 223 1e-56 UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=... 222 3e-56 UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=... 222 3e-56 UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostri... 219 2e-55 UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=P... 219 2e-55 UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=... 219 4e-55 UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 218 4e-55 UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax... 214 8e-54 UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttle... 214 1e-53 UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small... 213 1e-53 UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Ta... 213 1e-53 UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Bla... 213 2e-53 UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntro... 213 2e-53 UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coproco... 213 2e-53 UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 T... 213 2e-53 UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 212 3e-53 UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=... 212 3e-53 UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=... 212 4e-53 UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Eury... 209 3e-52 UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryo... 207 2e-51 UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Th... 206 2e-51 UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archa... 206 2e-51 UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=... 206 2e-51 UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya ... 206 3e-51 UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=... 204 1e-50 UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=... 204 1e-50 UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbio... 202 3e-50 UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=... 202 4e-50 UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacte... 201 6e-50 UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax... 200 1e-49 UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharo... 200 1e-49 UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 T... 200 1e-49 UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bac... 200 1e-49 UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas v... 199 3e-49 UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazo... 199 3e-49 UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Rosebur... 198 5e-49 UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=E... 198 5e-49 UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=... 198 6e-49 UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=... 197 1e-48 UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=P... 197 1e-48 UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Euk... 197 1e-48 UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryo... 197 1e-48 UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya ... 196 2e-48 UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostri... 196 2e-48 UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=... 195 3e-48 UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenoph... 195 5e-48 UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 ... 195 6e-48 UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=... 194 7e-48 UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) ... 194 1e-47 UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=... 194 1e-47 UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Therm... 194 1e-47 UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=... 193 2e-47 UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacte... 193 2e-47 UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=... 193 2e-47 UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa ... 192 3e-47 UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 192 4e-47 UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacte... 192 4e-47 UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n... 191 5e-47 UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=... 191 7e-47 UniRef50_Q5UP47 Putative replication factor C small subunit L499... 190 1e-46 UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 T... 190 2e-46 UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Ta... 190 2e-46 UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanob... 189 2e-46 UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative... 189 3e-46 UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia ... 189 3e-46 UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 T... 189 4e-46 UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas v... 189 4e-46 UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporo... 189 4e-46 UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1... 188 6e-46 UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostr... 188 7e-46 UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=E... 187 1e-45 UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 187 1e-45 UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=... 187 1e-45 UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=... 186 2e-45 UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces ... 186 2e-45 UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable... 185 4e-45 UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root... 185 6e-45 UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q... 185 6e-45 UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genom... 185 6e-45 UniRef50_B3T464 Putative ATPase family associated with various c... 184 8e-45 UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=E... 184 9e-45 UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Ta... 184 1e-44 UniRef50_C8V679 Subunit of heteropentameric Replication factor (... 184 1e-44 UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1... 184 1e-44 UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales... 183 2e-44 UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibac... 183 2e-44 UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5... 183 2e-44 UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidam... 183 2e-44 UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=... 183 2e-44 UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsu... 183 2e-44 UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5... 183 2e-44 UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit... 183 2e-44 UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-... 182 3e-44 UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 T... 182 5e-44 UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytoz... 182 5e-44 UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepI... 181 6e-44 UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprino... 181 8e-44 UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=... 181 9e-44 UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepI... 180 1e-43 UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=... 180 1e-43 UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Fle... 180 1e-43 UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cysto... 180 1e-43 UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=... 180 2e-43 UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax... 180 2e-43 UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium ... 180 2e-43 UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacill... 180 2e-43 UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevib... 180 2e-43 UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , ... 179 3e-43 UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3... 179 4e-43 UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarch... 178 6e-43 UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clos... 178 7e-43 UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Ta... 178 7e-43 UniRef50_B3T4L9 Putative ATPase family associated with various c... 178 8e-43 UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n... 177 8e-43 UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Coryneb... 177 9e-43 UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4... 177 9e-43 UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication fac... 177 1e-42 UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=... 177 1e-42 UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole geno... 177 1e-42 UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putativ... 177 1e-42 UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n... 177 2e-42 UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactoba... 176 3e-42 UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=... 176 3e-42 UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, ... 175 3e-42 UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=... 175 4e-42 UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotro... 175 4e-42 UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA 175 6e-42 UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=... 175 6e-42 UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 ... 175 7e-42 UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=B... 174 1e-41 UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured ... 174 1e-41 UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacill... 173 2e-41 UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepI... 173 2e-41 UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacte... 173 2e-41 UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit ... 172 4e-41 UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=P... 172 4e-41 UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistip... 172 4e-41 UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis R... 171 6e-41 UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 171 7e-41 UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia ... 170 1e-40 UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2... 170 1e-40 UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 ... 170 1e-40 UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH 170 1e-40 UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB 170 1e-40 UniRef50_C9KPY4 Replication-associated recombination protein A n... 170 1e-40 UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Plancto... 170 1e-40 UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Ta... 170 1e-40 UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Ente... 170 2e-40 UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria Rep... 170 2e-40 UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA2... 170 2e-40 UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax... 169 2e-40 UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostr... 169 2e-40 UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Coryneb... 169 3e-40 UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncult... 169 4e-40 UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bac... 169 4e-40 UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostr... 169 5e-40 UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnob... 168 5e-40 UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=... 168 5e-40 UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=... 168 6e-40 UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukar... 168 6e-40 UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n... 168 8e-40 UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium El... 168 8e-40 UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactob... 167 9e-40 UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma ... 167 1e-39 UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms R... 167 1e-39 UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 T... 167 1e-39 UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=... 167 2e-39 UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylo... 167 2e-39 UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ... 166 2e-39 UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=... 166 2e-39 UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacter... 166 2e-39 UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria Rep... 166 2e-39 UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bact... 166 3e-39 UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpet... 165 3e-39 UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostri... 165 4e-39 UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=... 165 4e-39 UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=H... 165 4e-39 UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lacto... 165 5e-39 UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Ta... 165 5e-39 UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusob... 165 7e-39 UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=... 164 9e-39 UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxaloba... 164 1e-38 UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillo... 164 1e-38 UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Cory... 164 1e-38 UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitro... 164 1e-38 UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH... 163 2e-38 UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronob... 163 2e-38 UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=... 163 2e-38 UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candida... 163 2e-38 UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aerom... 163 2e-38 UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine ... 163 2e-38 UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cyt... 163 2e-38 UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacte... 163 2e-38 UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=... 162 3e-38 UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n... 162 3e-38 UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=... 162 4e-38 UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=... 162 5e-38 UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organi... 162 5e-38 UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=... 162 5e-38 UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-lik... 162 5e-38 UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiace... 162 6e-38 UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sph... 161 6e-38 UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacil... 161 7e-38 UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacter... 161 8e-38 UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=... 161 8e-38 UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta R... 161 9e-38 UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n... 161 1e-37 UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactob... 161 1e-37 UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepI... 160 1e-37 UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=... 160 1e-37 UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBU... 160 2e-37 UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax... 160 2e-37 UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=... 160 2e-37 UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacte... 159 2e-37 UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytoz... 159 2e-37 UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=G... 159 3e-37 UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 R... 159 3e-37 UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=... 159 3e-37 UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 T... 159 3e-37 UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=... 159 3e-37 UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-lik... 159 4e-37 UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonprote... 159 4e-37 UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepI... 159 4e-37 UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus... 159 4e-37 UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=... 159 4e-37 UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermane... 158 5e-37 UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=... 158 6e-37 UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, hol... 158 6e-37 UniRef50_A9BKX0 Rfc2 n=1 Tax=Cryptophyta RepID=A9BKX0_9CRYP 158 8e-37 UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/r... 158 8e-37 UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5... 158 8e-37 UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleospori... 157 9e-37 UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium Re... 157 1e-36 UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacter... 157 1e-36 UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseud... 157 1e-36 UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Metha... 157 1e-36 UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bactero... 157 2e-36 UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 157 2e-36 UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Ta... 157 2e-36 UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696... 156 2e-36 UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria Rep... 156 2e-36 UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax... 156 3e-36 UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bact... 156 3e-36 UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggreg... 156 3e-36 UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endo... 156 3e-36 UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit... 156 3e-36 UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=... 155 3e-36 UniRef50_P0AAZ6 Replication-associated recombination protein A n... 155 3e-36 UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=... 155 4e-36 UniRef50_Q46AT6 Replication factor C large subunit n=4 Tax=Metha... 155 4e-36 UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Ta... 155 4e-36 UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM 155 4e-36 UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime sub... 155 4e-36 UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosa... 155 5e-36 UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacte... 155 6e-36 UniRef50_Q5UQ72 Putative replication factor C small subunit L510... 155 7e-36 UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxie... 155 7e-36 UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus ... 154 7e-36 UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bactero... 154 9e-36 UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrot... 154 1e-35 UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultu... 154 1e-35 UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteur... 154 1e-35 UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=... 154 1e-35 UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharo... 154 1e-35 UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Coryn... 154 1e-35 UniRef50_UPI000192574D PREDICTED: similar to Werner helicase int... 153 2e-35 UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=... 153 2e-35 UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collins... 153 2e-35 UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyo... 153 2e-35 UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=... 153 2e-35 UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria... 153 2e-35 UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR 152 4e-35 UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrob... 152 4e-35 UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycet... 152 4e-35 UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyc... 152 5e-35 UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Prote... 152 5e-35 UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodom... 152 5e-35 UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subu... 152 6e-35 UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=... 151 6e-35 UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Coryneb... 151 6e-35 UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A... 151 6e-35 UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacill... 151 7e-35 UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivi... 151 7e-35 UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IX... 151 7e-35 UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30... 151 7e-35 UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachl... 151 8e-35 UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actin... 151 9e-35 UniRef50_O34528 Uncharacterized AAA domain-containing protein yr... 151 9e-35 UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacte... 151 1e-34 UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Bl... 150 1e-34 UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacte... 150 1e-34 UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Br... 150 1e-34 UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=... 150 1e-34 UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Pl... 150 1e-34 UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissel... 150 1e-34 UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1... 150 1e-34 UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bact... 150 1e-34 UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Ta... 150 2e-34 UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax... 150 2e-34 UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like prote... 150 2e-34 UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like prote... 150 2e-34 UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K... 150 2e-34 UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=... 150 2e-34 UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriob... 150 2e-34 UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protei... 150 2e-34 UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalob... 150 2e-34 UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacill... 150 2e-34 UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=... 150 2e-34 UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rh... 150 2e-34 UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliiv... 149 2e-34 UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilag... 149 2e-34 UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like prote... 149 3e-34 UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacter... 149 3e-34 UniRef50_Q5UQ47 Putative replication factor C small subunit R395... 149 3e-34 UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri Rep... 149 3e-34 UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Ricket... 149 3e-34 UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archae... 149 3e-34 UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacterio... 149 3e-34 UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacter... 149 3e-34 UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN 149 3e-34 UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Ky... 148 4e-34 UniRef50_D2UXA6 Predicted protein n=1 Tax=Naegleria gruberi RepI... 148 4e-34 UniRef50_UPI00015B415D PREDICTED: similar to werner helicase int... 148 5e-34 UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex... 148 5e-34 UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisse... 148 6e-34 UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuni... 148 7e-34 UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrog... 148 8e-34 UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Barto... 147 1e-33 UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU 147 1e-33 UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=T... 147 1e-33 UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collins... 147 2e-33 UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 147 2e-33 UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavob... 147 2e-33 UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH 147 2e-33 UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepI... 147 2e-33 UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID... 146 2e-33 UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdello... 146 2e-33 UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1... 146 2e-33 UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase int... 146 2e-33 UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=... 146 2e-33 UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Metha... 146 3e-33 UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=... 146 3e-33 UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis AT... 146 3e-33 UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=... 146 3e-33 UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoaltero... 145 3e-33 UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB 145 3e-33 UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micro... 145 4e-33 UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterob... 145 4e-33 UniRef50_A5GNS9 ATPase related to the helicase subunit of the Ho... 145 4e-33 UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevot... 145 4e-33 UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desul... 145 4e-33 UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=... 145 4e-33 UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit... 145 4e-33 UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacte... 145 5e-33 UniRef50_Q6WI74 Gp44 n=1 Tax=Vibrio phage KVP40 RepID=Q6WI74_BPKV4 145 5e-33 UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales ... 145 6e-33 UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=V... 145 7e-33 UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Coryn... 145 7e-33 UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 145 7e-33 UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 145 7e-33 UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=D... 145 7e-33 UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD 145 7e-33 UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Coryn... 144 8e-33 UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchne... 144 9e-33 UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI 144 9e-33 UniRef50_D2RSM2 AAA ATPase central domain protein n=1 Tax=Halote... 144 9e-33 UniRef50_C5NXY2 Replication-associated recombination protein A n... 144 1e-32 UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collins... 144 1e-32 UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax... 144 1e-32 UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actin... 144 1e-32 UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase int... 144 1e-32 UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ... 144 1e-32 UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=... 144 1e-32 UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepI... 143 2e-32 UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Eurya... 143 2e-32 UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=S... 143 2e-32 UniRef50_Q8QN66 EsV-1-224 n=1 Tax=Ectocarpus siliculosus virus 1... 143 2e-32 UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Ta... 143 2e-32 UniRef50_C5DIS0 KLTH0E14696p n=2 Tax=Saccharomycetales RepID=C5D... 143 2e-32 UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=... 143 2e-32 UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=... 143 3e-32 UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Therm... 143 3e-32 UniRef50_A8MD97 AAA ATPase central domain protein n=1 Tax=Caldiv... 143 3e-32 UniRef50_O29072 Replication factor C large subunit n=1 Tax=Archa... 143 3e-32 UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens ... 142 3e-32 UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=... 142 3e-32 UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alterom... 142 4e-32 UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacte... 142 4e-32 UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopob... 142 4e-32 UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister in... 142 4e-32 UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=... 142 5e-32 UniRef50_A2QW62 Function: WHIP of M. musculus is involved in agi... 142 5e-32 UniRef50_Q8TZC5 Replication factor C large subunit n=1 Tax=Metha... 142 5e-32 UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota Re... 142 5e-32 UniRef50_B3PM47 ATPase, related to the helicase subunit of the H... 142 6e-32 UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=... 142 6e-32 UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-te... 141 7e-32 UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=... 141 7e-32 UniRef50_Q7VR24 DNA polymerase III, delta prime subunit n=2 Tax=... 141 7e-32 UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=... 141 7e-32 UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campyl... 141 8e-32 UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Ta... 141 1e-31 UniRef50_C8SAL8 AAA ATPase central domain protein n=1 Tax=Ferrog... 141 1e-31 UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=... 141 1e-31 UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorang... 140 1e-31 UniRef50_Q2RKY3 DNA polymerase III, delta subunit n=1 Tax=Moorel... 140 1e-31 UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepI... 140 2e-31 UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6B... 140 2e-31 UniRef50_P40938 Replication factor C subunit 3 n=106 Tax=Eukaryo... 140 2e-31 UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime sub... 140 2e-31 UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=d... 140 2e-31 UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulf... 140 2e-31 UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevi... 140 2e-31 UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Am... 139 2e-31 UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothi... 139 3e-31 UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 ... 139 3e-31 UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerot... 139 3e-31 UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera ... 139 3e-31 UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria Re... 139 4e-31 UniRef50_C4V742 Putative uncharacterized protein n=1 Tax=Nosema ... 139 4e-31 UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Aceto... 138 4e-31 UniRef50_P60373 Replication factor C large subunit n=1 Tax=Nanoa... 138 6e-31 UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinom... 138 6e-31 UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID... 138 6e-31 UniRef50_Q043K3 Helicase subunit of the Holliday junction resolv... 138 6e-31 UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n... 138 6e-31 UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=... 138 7e-31 UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_... 138 7e-31 UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdema... 138 8e-31 UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine ... 138 8e-31 UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida... 138 9e-31 UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=... 138 9e-31 UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=... 137 1e-30 UniRef50_P38251 Replication factor C subunit 5 n=17 Tax=Saccharo... 137 1e-30 UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacte... 137 1e-30 UniRef50_Q4Q084 Replication factor C, subunit 5, putative n=5 Ta... 137 1e-30 UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=... 137 1e-30 UniRef50_Q0W3P4 Replication factor C large subunit n=2 Tax=Eurya... 137 1e-30 UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Maripro... 137 1e-30 UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 T... 137 1e-30 UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellula... 137 1e-30 UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=... 137 1e-30 UniRef50_A2E870 Putative uncharacterized protein n=1 Tax=Trichom... 137 1e-30 UniRef50_O94697 Replication factor C subunit 5 n=2 Tax=Schizosac... 137 1e-30 UniRef50_A5UMF4 Replication factor C large subunit n=4 Tax=Metha... 137 1e-30 UniRef50_C5D4V1 DNA polymerase III, delta subunit n=78 Tax=Bacil... 137 2e-30 UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Ta... 137 2e-30 UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax... 137 2e-30 UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bi... 137 2e-30 UniRef50_A2BL93 Replication factor C large subunit n=3 Tax=Desul... 137 2e-30 UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=... 136 2e-30 UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=... 136 2e-30 UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_L... 136 2e-30 UniRef50_B5IA48 AAA ATPase central domain protein n=2 Tax=Acidul... 136 2e-30 UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizob... 136 3e-30 UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n... 136 3e-30 UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsul... 136 3e-30 UniRef50_D1JAL6 Putative replication factor C, large subunit n=1... 136 3e-30 UniRef50_Q1WU44 DNA polymerase III, delta subunit n=2 Tax=Lactob... 136 3e-30 UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJ... 136 3e-30 UniRef50_Q5GQL5 Sliding clamp loader gp44 n=6 Tax=root RepID=Q5G... 136 3e-30 UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=... 135 3e-30 UniRef50_A0CIK7 Chromosome undetermined scaffold_19, whole genom... 135 4e-30 UniRef50_B7XHX1 Replication factor C subunit n=1 Tax=Enterocytoz... 135 4e-30 UniRef50_Q8SR43 DNA REPLICATION FACTOR C 38kDa SUBUNIT n=1 Tax=E... 135 4e-30 UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit... 135 4e-30 UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria Rep... 135 5e-30 UniRef50_C8XUP3 Gp44 clamp loader subunit DNA polymerase accesso... 135 5e-30 UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellul... 135 5e-30 UniRef50_A6URV8 Replication factor C large subunit n=12 Tax=Meth... 135 6e-30 UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Paste... 135 6e-30 UniRef50_Q5JHP1 Replication factor C large subunit n=7 Tax=Therm... 135 6e-30 UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4... 135 6e-30 UniRef50_O64301 DNA polymerase accessory protein 44 n=13 Tax=T4-... 135 6e-30 UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ... 134 8e-30 UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 134 8e-30 UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q... 134 9e-30 UniRef50_B0NZJ0 Putative uncharacterized protein n=2 Tax=Clostri... 134 1e-29 UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysini... 134 1e-29 UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobi... 134 1e-29 UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, ... 134 1e-29 UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=... 134 1e-29 UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv... 133 1e-29 UniRef50_C9M5W8 Replication-associated recombination protein A n... 133 1e-29 UniRef50_C9DGI4 Gp44 clamp-loader subunit n=1 Tax=Deftia phage p... 133 1e-29 UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacter... 133 1e-29 UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella the... 133 1e-29 UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylo... 133 2e-29 UniRef50_Q89AG8 DNA polymerase III subunit delta' n=1 Tax=Buchne... 133 2e-29 UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=... 133 2e-29 UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardne... 133 2e-29 UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase ... 133 2e-29 UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alpha... 133 3e-29 UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=... 133 3e-29 UniRef50_B1CBF2 Putative uncharacterized protein n=1 Tax=Anaerof... 133 3e-29 UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=... 132 3e-29 UniRef50_O96271 Replication factor C subunit 1, putative n=7 Tax... 132 3e-29 UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba Re... 132 3e-29 UniRef50_Q9YBS5 Replication factor C large subunit n=1 Tax=Aerop... 132 3e-29 UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase s... 132 4e-29 UniRef50_A1APS5 DNA polymerase III, delta subunit n=4 Tax=Desulf... 132 4e-29 UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydroge... 132 4e-29 UniRef50_C6L9U8 DNA polymerase III, delta subunit n=4 Tax=Clostr... 132 4e-29 UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=T... 132 4e-29 UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=... 132 4e-29 UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospiri... 132 4e-29 UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=... 132 5e-29 UniRef50_B2S5K7 Replication factor C conserved domain protein n=... 132 6e-29 UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n... 132 6e-29 UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK... 132 6e-29 UniRef50_A1RSA3 Replication factor C large subunit n=5 Tax=Therm... 131 7e-29 UniRef50_Q39TA1 DNA polymerase III, delta subunit n=5 Tax=Geobac... 131 7e-29 UniRef50_Q6MN02 DNA polymerase III, delta subunit n=1 Tax=Bdello... 131 7e-29 UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=... 131 7e-29 UniRef50_Q2FUA8 Replication factor C subunit n=1 Tax=Methanospir... 131 8e-29 UniRef50_C3N5N1 Replication factor C large subunit n=12 Tax=Sulf... 131 8e-29 UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostri... 131 8e-29 UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macroco... 131 9e-29 UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6... 131 1e-28 UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau su... 131 1e-28 UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like prote... 130 1e-28 UniRef50_UPI0001C419FE replication factor C large subunit RfcL n... 130 1e-28 UniRef50_B6YXU0 Replication factor C, large subunit n=2 Tax=Ther... 130 1e-28 UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=... 130 1e-28 UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrio... 130 2e-28 UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Ta... 130 2e-28 UniRef50_C4R299 Protein with DNA-dependent ATPase and ssDNA anne... 130 2e-28 UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=... 130 2e-28 UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=... 129 2e-28 UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacte... 129 3e-28 UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus cal... 129 3e-28 UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemell... 129 3e-28 UniRef50_Q8D3A6 HolB protein n=1 Tax=Wigglesworthia glossinidia ... 129 3e-28 UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like prote... 129 3e-28 UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=... 129 3e-28 UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteri... 129 3e-28 UniRef50_Q5UQE8 Putative replication factor C small subunit L478... 129 3e-28 UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=... 129 4e-28 UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax... 128 4e-28 UniRef50_UPI000196B9A7 hypothetical protein CATMIT_00793 n=1 Tax... 128 4e-28 UniRef50_C6HUJ9 AAA ATPase n=1 Tax=Leptospirillum ferrodiazotrop... 128 5e-28 UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea s... 128 5e-28 UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 ... 128 5e-28 UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n... 128 5e-28 UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 ... 128 6e-28 Sequences not found previously or not previously below threshold: UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusim... 142 5e-32 UniRef50_A7AYS1 Putative uncharacterized protein n=5 Tax=Bacteri... 130 2e-28 >UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enterobacteriaceae RepID=DPO3X_ECOLI Length = 643 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 643/643 (100%), Positives = 643/643 (100%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA Sbjct: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH Sbjct: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ Sbjct: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA Sbjct: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA Sbjct: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL Sbjct: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI Sbjct: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 >UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 Tax=Enterobacteriaceae RepID=D0ZED4_EDWTE Length = 689 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 442/652 (67%), Positives = 508/652 (77%), Gaps = 9/652 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK Sbjct: 38 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 97 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCGVCDNCREIEQGRFVDL+EIDAASRTKVEDTRDLLDNVQYAPARGRF Sbjct: 98 GLNCETGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYAPARGRF 157 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQFHL+ALD Sbjct: 158 KVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLRALDH 217 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR QLE I + E + EPRALQLLARAAEGS+RDALSLTDQAIA G GQ++ AVS M Sbjct: 218 EQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAMGQGQITADAVSQM 277 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLDD+Q L+L+EA+ A+G VMA + +AA RG++WE LLVEML LLHR+AM+QL P+ Sbjct: 278 LGTLDDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENLLVEMLALLHRVAMLQLLPS 337 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + AA+E R+RELAR +PP D+QL+YQ LL GRKEL +APDRRMGVEMTLLRALAFH Sbjct: 338 ALDSQFAAVEPRLRELARMLPPADLQLFYQILLNGRKELAFAPDRRMGVEMTLLRALAFH 397 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA------ 414 P+ + EP + AV P S PTV P + + Sbjct: 398 PKAVIAEPSPAPSAAQGGDIPAVPATVAQRVAPPSPATVPPTVSAPPQAASAVPESTAQL 457 Query: 415 --ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 AR +L++ K AA + ++ALERLAS+++R Q + + E+A + Sbjct: 458 LQARSRLRQKAAGGSEPKKSEPAAPQRAQPASSALERLASISERGQQKIASAEQEQASTR 517 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 KEAYRWKA +++K TPKAL+ ALEHEKTPELAA LA E++ RD WA ++SQL L Sbjct: 518 KEAYRWKAQNRPVEEKAPKTTPKALRSALEHEKTPELAAHLAQESLTRDAWAQELSQLRL 577 Query: 533 PKLVEQVALNAWKEESD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 PKLV+Q+ALNA++E + +V LHLRS+QRHLN+ A+Q L +ALS G V L+IVED Sbjct: 578 PKLVQQLALNAFREPAPEGSVLLHLRSAQRHLNSASARQTLEQALSDHYGHPVALSIVED 637 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D+P RTPLEWRQAIYEE+LAQAR SI AD NIQTLRR FDAELDEESIRP+ Sbjct: 638 DDPQRRTPLEWRQAIYEERLAQARASIAADGNIQTLRRLFDAELDEESIRPV 689 >UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=4 Tax=Gammaproteobacteria RepID=A1U128_MARAV Length = 637 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 274/642 (42%), Positives = 355/642 (55%), Gaps = 11/642 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF D+VGQEHVL AL + L R+HHAYLF+GTRGVGKT+I RLLA+ Sbjct: 1 MSYQVLARKWRPRTFEDMVGQEHVLQALIHALEHQRLHHAYLFTGTRGVGKTTIGRLLAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT PCG CD+C+EI + RFVDLIEIDAASRT V+D R+L DNVQYAP RGR+ Sbjct: 61 CLNCETGITPNPCGECDSCKEILENRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHML+ SFNA LKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L+H+L EE I E AL LLARAA+GS+RDALSLTDQAIA G+ ++ VS M Sbjct: 181 EHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSLTDQAIAFGNENLAASDVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +V A+VE +G +++ IN + ++ +L +ML L HR+ M Q+ P Sbjct: 241 LGTIDQRDIQRIVNALVERDGPGLLSEINRISDFAPDYGVILSDMLSLFHRVTMEQVVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N M +++ELAR + D QL+YQT LIGRK+L PD RMG EMTLLR LAF Sbjct: 301 SADNAMGD-AAQVQELARRLSAEDAQLFYQTALIGRKDLSVTPDARMGFEMTLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + +P+ P + Q Sbjct: 360 PGTD--------RREPPALVSGNSNNGTAESEPEPGPVSQTASTQAVAAAPQPEPAPQPV 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + +P P A + + P + + A + A Sbjct: 412 PSPEPVAELEPQPPMVDDPPPWEPEDYGVQAESPEWQEPVPQSDSSIEPDASAISEPESA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 PV V + + +AL +E A + W L + + +A Sbjct: 472 PEPVSASDPVQSE-QNAGQALVNEPELAPAEPEQPVTADGFVWERDFRSLGITGMPGNLA 530 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + AV L L L N ++K+ AL G +L I + P + TP Sbjct: 531 SYSSMRMEGQAVVLTLDEGHARLLNARHEEKILAALRSRFGDATQLKIEQG-VPGLHTPA 589 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + + + A ESI D ++++ F+ + EESIRP Sbjct: 590 AFEERQRAARQKAAEESIRQDPLVKSIVERFEGRVVEESIRP 631 >UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q0A8H8_ALHEH Length = 648 Score = 419 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 271/643 (42%), Positives = 350/643 (54%), Gaps = 4/643 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+++ GQEHVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MAYQVLARKWRPRTFSEMAGQEHVLRALVNALEQQRLHHAYLFTGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TA PCG CD CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVTAEPCGTCDACRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLPG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L ++ +E +A EP+AL L +AA+GS+RDALSL DQAIA G G V V AM Sbjct: 181 GLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLLDQAIAFGAGAVREDEVCAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D L +EA+ +G ++A+ + R ++ L E+L LH++A++Q+ P Sbjct: 241 LGTIDRGFVLEALEALAAGDGRALLAVTARMSERAPDFSDALDELLHCLHQLALLQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL R+R+LA +P D+QLYYQ L GR++LP AP+ R G EM LLR LAF Sbjct: 301 ALPAGDPD-ADRLRDLAARLPAEDVQLYYQIALNGRRDLPLAPEGRTGFEMVLLRMLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P A +P + P++ P P T + A Sbjct: 360 PVTGTAVAATGGAGADAPPAAAAGSPRSQAAPKATRPRRE-AHPSPTPTERAEPAAAPAG 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + R A+E + A Sbjct: 419 GSPPPEQGGGLGGYREALMRAARGQAVEPDGPAPAPADPSAAAEPAPAGGREPAAGLTDP 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P + +T I + W + L L + Q A Sbjct: 479 PAWAEGPPVSDEEPPPIGAQPAAAETAPETTAPDDAGITPETWPWRARDLPLDGALRQFA 538 Query: 541 LNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + W E + V L L S L + +LA+ L G V L + ++P TP Sbjct: 539 AHCEWVGEEEGRVILRLDSGHGMLRTPALEAELAQVLGDYLGRAVRLDVRL-ESPHRDTP 597 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + E+L ARES+ D N+ L + F AEL +++RP Sbjct: 598 ATVARRERAERLRAARESLENDPNVARLHQRFGAELLPDTVRP 640 >UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=8 Tax=Gammaproteobacteria RepID=Q21L32_SACD2 Length = 690 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 277/688 (40%), Positives = 375/688 (54%), Gaps = 49/688 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF +++GQEHVL AL N L GR+HHAYLF+GTRGVGKTSIAR+LAK Sbjct: 1 MSYQVLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+++ PCG C C EI +GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCETGVSSEPCGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 KIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L HIL +E I E AL LAR+A+GS+RDALSLTDQ+I+ G G+VS V++M Sbjct: 181 ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D +LV A++ +G +++ + + A +++ L +++ LLHRIA+ Q P Sbjct: 241 LGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLLHRIAIAQALPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N ++ E A + P D+QL+YQT LIGR++L +PD R G EMTLLR LAF Sbjct: 301 ALDNSYGDRT-QILEFASKLAPEDVQLFYQTALIGRRDLSLSPDPRSGFEMTLLRMLAFK 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVM--------------------TPTQVPPQPQSAPQQA 400 P+ P Q+ AP + + + P + Q Sbjct: 360 PQGVADVPTQRLQAQPASAPASSSDVASVAAPAAPTAQAAPQPSSNVEPAPAQAAPEQTE 419 Query: 401 PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQAR 460 P+ P + Q A ++ + P PV E + + + Sbjct: 420 PSPPAQTSPPQQNVAPNTVEDNSPPADYYDNMPPYEEAQEPVKKPQAEPQQAQAEVPASE 479 Query: 461 PVPSALEKAPAKKEAYRWKATTPVMQ--------------------------QKEVVATP 494 P P P + A Sbjct: 480 PAPLGPMHTVVTAAESTQAVAEPEVNTSAPAKTPADALREQVKAIVGKEGISAPPKPAQQ 539 Query: 495 KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVC 553 A P + ++ E + W + +QL++ +++ A N DN + Sbjct: 540 LKNTPAAPINAAPVVTTPISLEELTPSHWVSVYNQLNVKGILQSTAANTVLIGREDNHLD 599 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD-NPAVRTPLEWRQAIYEEKLA 612 L + L + +L+ LS G ++ I + + TP + I +EK Sbjct: 600 FALDEQKSSLFDPSHSDRLSALLSDYFGVPIKAAIHLQNLPGDLETPAAYAIRIDQEKRV 659 Query: 613 QARESIIADNNIQTLRRFFDAELDEESI 640 A +++ D +QTL++ F+A L EE++ Sbjct: 660 AAIQNMYDDPVVQTLQQQFNATLVEETV 687 >UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB0_9GAMM Length = 647 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 361/649 (55%), Gaps = 9/649 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FA++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPRIFAEMAGQQHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GRF+DLIE+DAASRT V+D R+LLDNVQYAP+RGR+ Sbjct: 61 CLNCEVGVSSVPCGECSSCTEIGEGRFIDLIEVDAASRTGVDDMRELLDNVQYAPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+ SF ALLKTLEEPP HVKFL ATTDPQKLP+T+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSRCLQFNLKNLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L+ +L EE + E AL LARAA+GS+RDALSLTDQAI G GQV+ VSAM Sbjct: 181 ERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSLTDQAIGHGGGQVNEGEVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + + +A++ +G ++A I A + +++A L ++L + H++A+VQ P Sbjct: 241 LGTIERSYVVDICQALISGSGTELLAAIGRMAEQAPDYDAALTDILSVWHQVAIVQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +A + LA + D QL+YQ L+GRK+L +PD + G EM +LRALAF Sbjct: 301 ALDKGVANYTELL-ALAAAVSREDTQLFYQICLLGRKDLQLSPDAKSGFEMVMLRALAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT-----VPLPETTSQVLAA 415 P+ P+ A AV P +V P + PL V A Sbjct: 360 PQTSAQVGSGPKAVAKAQASAAVAPPLEVEPSGKKPEAVVTAVVDDRPPLEPAVEAVAEA 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + A EP A + + V ++ A + Sbjct: 420 VSAPESTVKPVTAAPVEPTAQLVVESPVEVYQKSVQPTGYDGVQEAVQKTVDGAVGQPIE 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T ++ P + L+ + A + E D W QLS+ Sbjct: 480 ETVDETIKETIEEASE-KPSQERTPLQTPEAAPAPAPIPLERFTPDNWIQLRRQLSIGAS 538 Query: 536 VEQVALNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + ++A + S + + S L + Q++ +EALS V + I Sbjct: 539 LGEIASHCLYLGRSGQQLNFLIDSDHNSLYDEPHQEQFSEALSDYFQQPVTVDITLG-VA 597 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP E+L +A +S+ D + ++ FD ELDE S+RPI Sbjct: 598 EKETPRAATTREKAERLVEAVDSLNQDPAVVKFKQLFDGELDERSVRPI 646 >UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE5_METSD Length = 610 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 246/644 (38%), Positives = 344/644 (53%), Gaps = 36/644 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPKLFEALVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCGVC C +I++GRFVD++E+DAAS T+V+ R+LLDN QYAP GRF Sbjct: 61 SLNCETGITAHPCGVCSACVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYAPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLSR +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+L+ + Sbjct: 121 KVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFNLRQMST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L+ +L +E+I + ALQL++RAA GS+RDALSL DQAIA G +V+ V AM Sbjct: 181 PAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIAYGGNRVNESEVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L++A++ +G +MA R + ++ L ++ LLH +A+ Q P Sbjct: 241 LGAIDQSYLYGLLDALIAQDGPSLMAQAKSMEERSLSFDTALADLAQLLHHLAVAQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ D+ + +LA +P +QLYYQ L+GR++L APD G M LLR LAF Sbjct: 301 SIPLDLPERTALL-DLATKLPADKVQLYYQIALLGRRDLGLAPDEFAGFTMCLLRMLAF- 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P P P + + ++ A + Sbjct: 359 ------------------SNESTSKPAPTAPAPSGSDRPIAQHAGSAASALAAATMARSA 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A A P A A + E + A + + + PA + Sbjct: 401 TPSPAAIASPPTPQAKPVAEATMVTSNEVDVAPATAPAAATPVATVAETPADVPTHS--- 457 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V++P+ A + + + W V +L L L +A Sbjct: 458 ---------QVSSPEPAYTAASEPTLASSPVEDSLQEEFDGNWRLLVDKLKL-GLARALA 507 Query: 541 LNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + + + L + + +HL + Q+KL A+ G + L TP Sbjct: 508 QHCELIGHTADRLELQVPEAHKHLLDPNYQEKLKAAIEAHFGRKMHLQFSIG--GGNNTP 565 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E +QA SI D +Q L R F A++ SI+P+ Sbjct: 566 AHQISQEKAELQSQAESSIQQDGFVQALMRDFGAQIIPSSIKPL 609 >UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=cellular organisms RepID=Q7NXL6_CHRVO Length = 639 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 265/645 (41%), Positives = 361/645 (55%), Gaps = 10/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG TA PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GRF Sbjct: 61 SLNCETGTTAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYAPTMGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E I +E AL LL RAA GS+RDA SL DQAIA G G+V V AM Sbjct: 181 QQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAYGLGEVKEDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L++A+ ++G +MA + A RG+ +++ L E+ LL ++A+ Q PA Sbjct: 241 LGAVDRRYLFTLLQALAASDGPALMAEADRLAERGVSFDSALSELAVLLQQLALAQTVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL D + LA I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 301 ALAADEPER-DTLFALADAIAPQDVQLYYQIAIHGRKDLALAPDEHAGFNMTLLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + A V P V ++ + + L A+ Q + Sbjct: 360 PANAPAQTAAPARPAAAVQPRPVAASAAAVASVSVPAERGMSPAARALQAAGLGAQAQGK 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +A+ + Q P +A PA + Sbjct: 420 PRAAEPSPAAEPEPEPAPLPSAVVSAVSEPSKPAPSPQPAPALAAPVSEPA------AQD 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVEQV 539 ++E+V P + A+ + W V+ L + Sbjct: 474 DEDERDEEEIVEAPWSDDDAMPAYMQQPPLEDEPSSYSFDGDWQRLVADLGAKLGAARML 533 Query: 540 ALNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 A NA + S + + L + S RH++ R Q+KL AL+ G V+L + + + T Sbjct: 534 AHNAVLKRWSQDRLELAVPESFRHMSGRDYQEKLKAALAERFGHPVDLAVTV-EELGMET 592 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P + +E+LA ARE + D +Q + R F A L E+I+P+ Sbjct: 593 PAMTDARLRQEQLAVARECMQNDPVVQQMVREFGATLLIETIQPV 637 >UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 Tax=Xanthomonadaceae RepID=B0RYK4_XANCB Length = 752 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 342/655 (52%), Gaps = 18/655 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+ FA++VGQEHV+ AL+N L GR+HHA+LF+GTRGVGKT+IAR+ AK Sbjct: 100 MSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAK 159 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG +A PCG C C +I+ GR++DL+EIDAAS T V+D R++++N QY P+RG+F Sbjct: 160 SLNCETGTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKF 219 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ +FNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK LD Sbjct: 220 KVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 279 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ Q+ IL E I +P A+ L++AA+GSLRD LSL DQAIA G + V M Sbjct: 280 DQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTM 339 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D Q ++++A+ + +G +++ ++ A +W +L + LHRI + QL P+ Sbjct: 340 LGTVDRTQVGAMLQALSDGDGAQLLKVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPS 399 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A D A + P +QL+YQ L GR++L AP R G EM +LR LAF Sbjct: 400 VAFVGDGIDPTG----FAAQLRPEVVQLWYQMALNGRRDLYLAPSPRAGFEMAVLRMLAF 455 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P +P A T T V P +A Sbjct: 456 RPAAAVPAGSGDDGRGASAGGHTRGTATGVQAAPAAAAPARAATSAKAADVSPAPVVSAP 515 Query: 420 QRVQGA------TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A +A AR + + A +A A Sbjct: 516 PVAAAPSPVVVLPTAAAEPAPSAPPARTDDTPPWAVDDAPVRAQAAPQRATAEVPAAVPL 575 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE-----AIERDPWAAQVS 528 A P + + P AA + + W V+ Sbjct: 576 MAPEAAMALPATVADDAAPAAMDAVVPVAPPSAPAPVTPPAATFDDGHIADAEQWLELVT 635 Query: 529 QLSLPKLVEQVALN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 + L Q+A N A+ D + L L +LN+ + LA+AL+ G+T + Sbjct: 636 RSGLNGPSRQLAANAAFIGHRDGVLRLALAPGFEYLNSERSIANLAQALAPELGNTPRIV 695 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 I + V T E E+ + A + + D N+Q L + A + +SIRP Sbjct: 696 IETG-SADVETLHERANRQKGERQSAAETAFMNDPNVQQLIQQQGARVVPDSIRP 749 >UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxalobacter formigenes RepID=C3XBH9_OXAFO Length = 604 Score = 408 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 226/646 (34%), Positives = 334/646 (51%), Gaps = 45/646 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F ++VGQ+HV+ AL++ L R+HHAYLF+GTRG+GKT+++R+LAK Sbjct: 1 MSYLVLARKYRPKNFENIVGQDHVVRALSHALESQRLHHAYLFTGTRGIGKTTLSRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA+PCG+C+ C+ I+ RFVD +E+DAAS + D LL+ YAP RF Sbjct: 61 SLNCEKGITASPCGICEACKAIDSDRFVDYVEMDAASNRGIADMLQLLEQAVYAPTAARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNA+LKTLEEPPE+VKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E+I E AL+LLA+ A+GS+RDALSL DQAIA G V+ +AV M Sbjct: 181 SHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTAGHVTDEAVQDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++ + +G ++ + +E A R + + L ++ LL +IAM+Q P Sbjct: 241 LGALDQTYLIRLLDHLANRDGTSLLKVADEMAFRSLSYSTALQDLGLLLQKIAMIQSVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +D+A + LA P ++QLYYQ + GR EL APD G MTLLR LAF Sbjct: 301 YPLDDIAD-SDNLSRLAAIFSPEELQLYYQIAIHGRNELGLAPDEYAGFSMTLLRMLAF- 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P + + A + + Q + + ++ Sbjct: 359 ---------------SPDKGNRSIPQIVSKSERTPANRPKTDSGKGQAVEQKVPSSPVVE 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ K + +A + + + + + + + + A Sbjct: 404 KIPVPEKKPEETVSAIPPWVDDESFSNQGGQTAKSPEVKKNESAPVTEVVALA------- 456 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + K E W + L + +V+Q+A Sbjct: 457 ----------------MSAEMPAAPADVPVKKNPGEGSWNGNWPELAAVLPVRGMVQQLA 500 Query: 541 LNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 E+ D+A LHL+S L +L E L+ G V++T Sbjct: 501 QQTELVHWEKKDSACVLHLKSPIATLCTPNNINRLTEVLAEHFGQPVKITTEIGKV--EE 558 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 T + E+ QA E+I D ++++ F + E S++P+ Sbjct: 559 TANQNAIEARAERQRQAEEAITNDPYVKSVIAEFGGHIVEGSVKPV 604 >UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax=Betaproteobacteria RepID=A6T0H3_JANMA Length = 673 Score = 408 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 238/676 (35%), Positives = 325/676 (48%), Gaps = 36/676 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP++F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 NC GIT+TPCGVC+ C I+ GRFVD IE+DAAS V++ LL+ YAP Sbjct: 61 SFNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + RFKVY+IDEVHML+ H+FN++LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L++IL +E+I E AL+LLA+ A GS+RDALSLTDQAIA G+V+ Sbjct: 181 KQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLD 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG LD + L++A+ E +G ++A+ +E A R + + A L ++ LLHR+A+ Sbjct: 241 AVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNAALQDLCTLLHRVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PAA+ D+ + LA +IQL+YQ + GR EL APD G MTLLR Sbjct: 301 QTVPAAVPEDLPEYAD-VMRLAGLFDAEEIQLFYQIAVHGRNELGLAPDEYAGFSMTLLR 359 Query: 356 ALAFHPRM------------------PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 LAF P P S +A Sbjct: 360 MLAFRPGFGPAEAKPVAAAAPAARPAAATPAVAPAASAPAARLSAAPQAASTSAPVARPT 419 Query: 398 QQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 ++ + A A + A S + Sbjct: 420 GAMSPARAALEAARAGVKGAPAPAARPVAPAAPVAAPAPAAVAAPSPAMAVADRSPAIDM 479 Query: 458 QARPVPSALEKAPAKKEAYRWKATTPV-----MQQKEVVATPKALKKALEHEKTPELAAK 512 P + + A P Sbjct: 480 APAPPWDDEPPFAGSNGIEEFSSPVAQKKTEPEPAAVAEAAPAPAPVPAAPRVARPFQLH 539 Query: 513 LAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-----EESDNAVCLHLRSSQRHLNNRG 567 A W A + L + + +Q+AL + + L + L G Sbjct: 540 PVASLNWDGNWPALAAILPVRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLANG 599 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + +KL L G TV L T A E+ +A +S+ D +Q L Sbjct: 600 SAEKLTAVLCEHFGQTVRLQTTIGAV--EHTASAAAIADRAERQREAEQSMQEDPFVQKL 657 Query: 628 RRFFDAELDEESIRPI 643 R F A + S++P+ Sbjct: 658 MREFGATIVPGSVKPV 673 >UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fischeri RepID=B5FFM6_VIBFM Length = 709 Score = 407 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 309/712 (43%), Positives = 398/712 (55%), Gaps = 72/712 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ E RAL L+A AA+GS+RDALSLTDQAIA G+G V+ + VSAM Sbjct: 181 DQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIALGNGSVTAEIVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M +N+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ +L RK+LP AP+ R G EM LLR +AF Sbjct: 301 TLDKTQPD-AERIELLSTQLSPQEVQLFYQIVLQSRKDLPLAPNERTGAEMMLLRMVAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P P AP P T+ Q +QQ Q Sbjct: 360 PVHAQALEAQPIAVPSTEPQAINTAPRVQQQAPSVPANVAPQAQRPMTSQQRPTMQQQTQ 419 Query: 421 RVQGATKAKKSEPAAAT--RARPVNNAALERLASVTDRVQARPVPSALEKAP-------- 470 + A P+ + E + + + P AP Sbjct: 420 QGHAPANVPPMHSEQPPMYDAPPMGTPSGESASQAPQQSSSAQPPMQETPAPRSGLLGVR 479 Query: 471 ------------------------------------------AKKEAYRWKATTPVMQQK 488 A + + ++K Sbjct: 480 NQLRSAKNNLTNTGTGSKKASAASDKKKTSSVLERIAEKQHLAPRAQVSQIGNSATQEKK 539 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-----------------QLS 531 + + ++ +A+E + V L+ Sbjct: 540 PEEPYRWKSTQPEMKKVVSDVTPTKLKQALEHEKTPEMVKLLVEESSKQDTWSALAMSLT 599 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 LPKLV+Q+ LN+ E DN + LHLR++Q HLN A + + +AL+ V +TI Sbjct: 600 LPKLVQQLVLNSAFVEQDNQIKLHLRAAQSHLNGDKANELITQALTQTLNREVTITIDIS 659 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 D TPLE R+ +Y+ KL A +S+ D ++ + F AE+D+ES+RPI Sbjct: 660 DEGT--TPLELREQMYQTKLQTAYQSLQQDPHVNFFIQRFGAEMDQESVRPI 709 >UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pasteurellaceae RepID=DPO3X_HAEIN Length = 688 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 310/693 (44%), Positives = 408/693 (58%), Gaps = 55/693 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQEH++TALANGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TATPCG C+NC+ IEQG F+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLKALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L HIL +E+I E AL LA+AA+GS+RD+LSLTDQAIA GD QV+ VS M Sbjct: 181 TQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+ ++ ++ A+ + NGE +M + A +W+ LL E LH+IA++QL P Sbjct: 241 LGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + LA+ I P ++Q +YQ ++ GRK+L AP+RR+G EMTLLRALAFH Sbjct: 301 K----SSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFH 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ P+ P + + + T Q + ++ Sbjct: 357 PKFLTAVPKANTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAYSQAKPNKTSIPNLASL 416 Query: 421 RVQGATK-------------------------------------------------AKKS 431 A + K Sbjct: 417 SALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKP 476 Query: 432 EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV 491 + A ++ ++ + + E+ + YRW+ + P + + + Sbjct: 477 KHIEKPTLPSNAAQAPQKNSTEENSSDDNVEIAQDEQEILSADTYRWEWSNPELAKADTG 536 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDN 550 P +K+A+ + TPEL K+ + ++D WA V + L +++ALN + ++D+ Sbjct: 537 VCPSDIKQAILKDITPELRLKIITQTQQQDQWADIVERSGLTGFSKELALNCFLQSKTDD 596 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 + L L S + HL + + LAEALS L+G + LTI DD+ V TP+E+R+ IY+ Sbjct: 597 EINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLDDS-NVTTPIEYRRNIYQAL 655 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +A+ + D+ +Q L FDA+LD ESIRP+ Sbjct: 656 REKAQNELQKDSKLQILLNEFDAKLDVESIRPV 688 >UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q0VNM5_ALCBS Length = 615 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 268/643 (41%), Positives = 363/643 (56%), Gaps = 34/643 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I ++ AL L +AAEGS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSLTDQAIAFGGEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALASVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM LLR + F Sbjct: 301 S-------YDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLLLRMVLFT 353 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ +V P V + + L +T + A Sbjct: 354 PK----------GVLVQGDNPSVKKPKAVASSEEPGDKPDLRALLNKTPAAAPAPVSLPT 403 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + EP+ A A + P SA+ AP++ Sbjct: 404 PASASAPVTAPEPSPTRAAPAAAEQAASADDAPPWDESPGPSTSAVAVAPSQS------- 456 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 E A P+ + + + A+ EA WAA + +L + V +A Sbjct: 457 --------EPQAEPEPNQAPTQEVEPLAPLAEPTNEAEVATWWAALLLRLDVDGTVRNIA 508 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L NR ++L+ AL +++ + + P TP Sbjct: 509 RNAVLISREESVWTLRISPGHQVLVNRERLEELSGALGNYFQRRIQVQVEFEQQPGA-TP 567 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E L QA++++ +D +Q L F LD+ES+ P Sbjct: 568 EVIAEARRQELLLQAKDTLHSDPVVQQLITTFGGRLDDESVTP 610 >UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4U2_9GAMM Length = 635 Score = 397 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 262/643 (40%), Positives = 359/643 (55%), Gaps = 14/643 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP+TF ++VGQEHV AL + L R+HHAYLF+GTRGVGKT+IAR+L++ Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLHHAYLFTGTRGVGKTTIARILSR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCGVC C+EI GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGR+ Sbjct: 61 CLNCEQGVSARPCGVCPTCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LKAL Sbjct: 121 KVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFSLKALPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ +L++E I +E AL L +AA+GS+RDALSLTDQAIA G Q+S++AV+AM Sbjct: 181 EQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSLTDQAIAFGSEQLSSEAVNAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+L+ A+ E V+ + + ALL E++ LH++A+ Q P Sbjct: 241 LGTVDRNHVLTLLVALAEQEPGGVLQALATVSEHCPGELALLDELISQLHQLAVCQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ++LA + IQLYY L GR++L APD R +EM LLR + F Sbjct: 301 S-------YDETQQQLAAALTAEQIQLYYDVALRGRRDLQDAPDSRAALEMLLLRMVLFT 353 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ L + P+ P + P + S+ A Sbjct: 354 PKGVLV-----QGDSPAAKKPEAAVPSAEPGGKPDLRALLNSPPAAASHSEPAARPAAQP 408 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A+ + + + ++ A + A Sbjct: 409 PEPAPATVTSAPAQQTAPVEAAAPASADDAPPWDEGPASSSPSASAALAQVEANQPEPAA 468 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + P+ + + A+ EA WAA + +L + V +A Sbjct: 469 EAAAAVAAQPQSDPEPNAEPAPESENLAPLAEPTNEAEVATWWAALLLRLDVDGTVRNIA 528 Query: 541 LNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 NA ++ L + + L N+ ++L+ AL +++ + + P TP Sbjct: 529 RNAVLISREESVWTLRISPGHQVLVNKERLEELSGALGNYFQRRIQVQVEFEQQPG-ETP 587 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A +E LAQA++++ AD +Q L F LDEES+ P Sbjct: 588 ERMAEARRQELLAQAKDTLHADPVVQQLVTTFAGRLDEESVTP 630 >UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Bacteroidales RepID=C3QNI8_9BACE Length = 621 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 158/637 (24%), Positives = 263/637 (41%), Gaps = 22/637 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ ++E I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L + +E + L N+ +G + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q + QQAP P + + A Sbjct: 363 TTEGDDVSGGRGPKKTIKPVFTQPAAAQQPQVASATQVQQAPVHSSPSSVTTQAANGTTA 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q Q + + PA+ A + + + + + + K Sbjct: 423 QHPQASAAVQPGAPASPGAASSAPSQGAGVAQTAKEERKIPVMKMSSLGVSIKNPQRDQV 482 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + V P+ + + E+D A ++ L + Sbjct: 483 SQNATTTYVPKVQQPEEDFMFNDRDLNYYWQEYAGQLPKEQDALAKRMQMLRPA-----L 537 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVRT 598 N+ + + + + +L + L S V +T+ + Sbjct: 538 LNNS------TTFEVVVDNEFAAKDFTALIPELQDYLRGRLKNSKVMMTVRVSEATETVR 591 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 P+ + + + L+ F EL Sbjct: 592 PVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 620 >UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 Tax=Pasteurellaceae RepID=A6VMZ2_ACTSZ Length = 699 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 321/704 (45%), Positives = 424/704 (60%), Gaps = 66/704 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F V+GQEH+LTALANGL R+HHAYLFSGTRGVGKTSIARLLAK Sbjct: 1 MSYQVLARKWRPQNFHQVIGQEHILTALANGLKENRLHHAYLFSGTRGVGKTSIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE G F+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCIHGVTAEPCGECEHCKAIENGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L +IL +E I EP AL +A+AA+GS+RD+LSLTDQAIA + + V+ M Sbjct: 181 QQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIAMSNADIRVDVVNIM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+Q + ++ A+ + NGE++M I A G +W+ LL+E+ LH+IAM+QL P Sbjct: 241 LGLLDDNQPIEILYALHQGNGEKLMQGIQAVADNGADWDELLIEVGEALHQIAMLQLLPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + E ++ LA+ I P +IQ +YQ + +GRKEL +AP+RR+G EMTLLRALAFH Sbjct: 301 RI-----DEESQLGFLAKHISPENIQFFYQIVTMGRKELAFAPNRRIGAEMTLLRALAFH 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-------------------PQPQSAPQQAP 401 P+ EP + + + Q P Sbjct: 356 PKFSRAEPAEHQVNSTVQDSARAHPEKESAVKKTINLVEMPVYNQHLRVSATPQREQSPP 415 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 ++TS L A Q++R++ + ++ S +P L V+ + RP Sbjct: 416 GNLSGKSTSNALNALAQIERLRASVRSAASTEEKTGFEQPQPAVQAHELPVVSMPQKERP 475 Query: 462 VPSALEKAPAKKEA---------------------------------------YRWKATT 482 +++ + + YRW+ Sbjct: 476 QTDLIDRLASLAQQAQDNLNPAVKRKSVSKPVSDSTQETENEDDSDDANLAETYRWEWIN 535 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP--KLVEQVA 540 P M + E V P +K+A+ EKTPEL K+ A A ERD W V L L KLV+Q+A Sbjct: 536 PEMAEAENVIRPSEIKQAILKEKTPELVKKVIALAEERDDWTKTVEHLGLDHLKLVKQIA 595 Query: 541 LNAW-KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 LN+ ++D+ + L LRS+Q+HL A + L AL + G + L I +D+ TP Sbjct: 596 LNSVILAQTDSEIVLGLRSNQKHLQRESAIEALQAALKVYYGKDLRLKIELNDDERRPTP 655 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 L++R+ IY E +AR+ + AD ++ L++ FDA LD +SIRP+ Sbjct: 656 LDYRRQIYHELSERARQDLQADKKVKLLQQAFDAHLDLDSIRPV 699 >UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseriaceae RepID=C5TP18_NEIFL Length = 666 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 249/662 (37%), Positives = 364/662 (54%), Gaps = 22/662 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE + PCG C++C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCENAVHGEPCGQCESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+P+T+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E++ ++P+ALQLL RAA GS+RDALSL DQAIA G G+V+ Q V M Sbjct: 181 QQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAMGSGKVAEQDVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+E ++ NGE ++ E +AR I +++ L E+ LL R+A++Q P+ Sbjct: 241 IGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAMLLQRLALIQTIPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL ND + L++ + IQLYYQ + G+++LP APD G MTLLR LAF Sbjct: 301 ALANDDPER-ETLLRLSQALSGEQIQLYYQCAIHGKQDLPLAPDEYAGFVMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + + + P P+S P AP V ++ + Sbjct: 360 PLAASGCDTQSQIEHTDLHSDHQKAEAEKKPFQLPKSEPIAAPAVEKEAAPAKQDTVERS 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + + P V+ + + A+ + ++KAPA +E Sbjct: 420 SEETVQSVQQQADVPPWEEMPSQVSVESPQTQAAQMQEATEPLPVAKVQKAPAPEEYPHM 479 Query: 479 KATTPVM-------------QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 P V P A ++ E E E + + W + Sbjct: 480 DEEIPPPYFDEAYTYEDSHHADVMEVPQPVASAESEEEEGDEEELQFAPLPEFKTENWHS 539 Query: 526 QVSQLSLP-KLVEQVALNAWKE---ESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM--L 579 + + + + +A NA + L L + N+ K+ + LS Sbjct: 540 IIERFARKLGAAQMLAQNAAWTSYDAEAGLIMLSLTDEAKATANKERLDKICQTLSEAYH 599 Query: 580 KGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 G+ T D+ TP+ R+ I EE QA+E + AD Q + + F+A+ +S Sbjct: 600 LGNLRLQTEPWQDDKGWETPVMRRKHIQEEGRQQAQELLEADTTAQKILQTFEAQWLPDS 659 Query: 640 IR 641 + Sbjct: 660 LE 661 >UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z526_9NEIS Length = 657 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 269/647 (41%), Positives = 360/647 (55%), Gaps = 18/647 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FAD+VGQEHV+ AL N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 22 MTYQVLARKWRPKRFADLVGQEHVVRALTNALAGERLHHAYLLTGTRGVGKTTIARILAK 81 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP GR+ Sbjct: 82 SLNCEAGVGAEPCGECSACRQIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTSGRY 141 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 142 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFSLRNMTP 201 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L +L+ E +++E AL LL RAA GS+RDALSL DQAIA G G+V V AM Sbjct: 202 QQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLLDQAIAYGVGKVEEGGVRAM 261 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+EA+ EA+G R++A A RG+ +++ L E+ LL +IA+ Q PA Sbjct: 262 LGAVDRAYLYTLLEALAEADGPRLIAEAKALAERGVGFDSALGELALLLQQIALAQTVPA 321 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D + LA+ I P D+QLYYQ + GRK+L APD G MTLLR LAFH Sbjct: 322 AITGDDPD-AEAVLALAQLIAPEDVQLYYQIAIHGRKDLALAPDEHAGFTMTLLRMLAFH 380 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P AP T P+P S P + ++ + Sbjct: 381 PL------------NAPGDSTPTPRAAASRPEPASRPAAPSEPSVEGASAAKALLARLSG 428 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R A A + +A A +E A P+ + A A Sbjct: 429 RNGAARSAPATPDESAPADPEPEPARVEPAPRPVPAAPAVATQPEPGTPPSVELAPWEDA 488 Query: 481 TTPVMQQKEV--VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVE 537 A A A E P A + WAA V++L Sbjct: 489 PDDAGDVAAEAWQAGASADDSAAEAWSEPAAPPAAAEPYVFDGDWAALVAELGARMGASR 548 Query: 538 QVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 +A NA + D + L + S RHL R Q+KL AL+ G EL++ + + Sbjct: 549 MLAHNAVLKSWDGRRLQLAVPESFRHLATRDYQEKLKAALAERFGQAPELSVSV-EELGM 607 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TP +E+LA AR ++ D ++ L F+A L E+I+P+ Sbjct: 608 ETPAMREARFRQEQLAAARVNLENDPVVRQLVGEFNAVLLTETIQPV 654 >UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU95_9GAMM Length = 591 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 252/644 (39%), Positives = 345/644 (53%), Gaps = 56/644 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP++F ++VGQEHVL AL N L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MTYQVLARKWRPKSFGEMVGQEHVLQALINALDHDRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +C EI +GR VDL+E+DAASRTKVEDTR+LL+NVQYAP R R+ Sbjct: 61 CLNCEQGVSSHPCGECGSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFNLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L ++L E ++ E AL LL RAA GS+RDALSLTDQAIA G G++ V +M Sbjct: 181 EQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAFGSGKLIETDVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D L+E + + ++A++ A ++E E++ ++HR+A+ Q P Sbjct: 241 LGSVDLSFVYQLLEGVAAGDPAELLAIVGRMAEHAPDFEGSTDELISMVHRVAVAQAVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N R+ LA++I D QL+YQ + G++++ APD R G EM LLR LAF Sbjct: 301 AIDNSWGD-ADRVAALAQSIGAEDAQLFYQIAINGKRDMALAPDPRSGFEMLLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + + P Q +A + T P Q +LQ Sbjct: 360 PAAVID---------ESLGAADLQPAPLNPDQGSTAGEVGATAKKPHEPRQEAVPSIELQ 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + A+ + + V+ P Sbjct: 411 APEVSPQRPTERLKPEQPSNDADPASRQAVPLVSSPPPEVP------------------- 451 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + W +SQL L +V+ +A Sbjct: 452 -------------------------ESTPKVTGVILEPSPENWPQLLSQLGLLGMVQSIA 486 Query: 541 LN-AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 N E + + L + L N G + K+ AL + + I + P +TP Sbjct: 487 SNMQLIEAAAGQLEFVLDTDNASLFNDGHRDKIRLALQNYLDRELSVAITVGEPPG-KTP 545 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + E+ QA E+I +D +Q L FD +LD SI P+ Sbjct: 546 AMIQAKAASERQKQAIEAIESDPRLQALITKFDGQLDRASIAPL 589 >UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionaceae RepID=B6EJ42_ALISL Length = 714 Score = 394 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 303/717 (42%), Positives = 403/717 (56%), Gaps = 77/717 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F DVVGQ HVLTAL N L R+HHAYLFSGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPHHFKDVVGQSHVLTALENALDHNRLHHAYLFSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GIT+TPCGVC C+EI++GRFVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 GLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKF+LATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQFHLKHISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL+ +L++E ++ + RAL L+A AA+GS+RDALSLTDQAIA G+G V+ VS M Sbjct: 181 DQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSLTDQAIALGNGNVTADIVSMM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ ++EA+ N + +M+ IN+ A G+EW+ L E+ LH++AM Q PA Sbjct: 241 LGTLDTDQAIRILEAISTKNMQTLMSCINDLADIGVEWDGLAKEIAAQLHKLAMYQALPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ L+ + P ++QL+YQ L R +LP AP + GVEM LLR +AF Sbjct: 301 TLDKTQPD-AERIELLSGQLSPQEVQLFYQIALQSRNDLPLAPTEKTGVEMMLLRMVAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP----------QPQSAPQQAPTVPLPETTS 410 P +P + + P Q P P + AP P+ S Sbjct: 360 PVHAQAIEALPIAVPSMEPAAVNVAPQQPAPASRVQQVIASAPNAEVPVAPKPMQPQAVS 419 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA----- 465 Q + + + + +E P + + ++ + P+ + Sbjct: 420 QTVYSPVSNSQQSSSAPLDSTEAQPPVYDAPPMGESSQSDSAPVQNIPQEPIATPRSGLL 479 Query: 466 ------------------------------------------LEKAPAKKEAYRWKATTP 483 ++ A + T+ Sbjct: 480 GVRNQLRSAKNNLSNTTTGTSPKKGSAASDKKKTSSVLERIAEKQHLAPRTQVSQLGTSV 539 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--------------- 528 ++K + + ++ +A+E + V Sbjct: 540 SQEKKPEEPYRWKASQPEVKKVVSDITPTKLKQALEHEKTPEMVQELVDETVKQDTWSAL 599 Query: 529 --QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 L+LPKLV+Q+ LN+ EE D+ V LHLRS+Q HL N A + +++ALS ++L Sbjct: 600 AMSLALPKLVQQLVLNSSFEEHDDQVSLHLRSAQSHLINDKAHELVSQALSSALNKEIKL 659 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I +PLE R+ +Y+ KL A +S+ D ++ + + AE+D+ES+RPI Sbjct: 660 NIDISAEGT--SPLELREQMYQTKLQTAYQSLQQDPHVNFFMQRYGAEIDQESVRPI 714 >UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KYG2_9GAMM Length = 672 Score = 391 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 243/643 (37%), Positives = 336/643 (52%), Gaps = 59/643 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQVLARKWRP F ++VGQ+HVL AL N L R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 84 MGYQVLARKWRPGNFQEMVGQQHVLRALVNALDNDRLHHAYLFTGTRGVGKTTVARILAK 143 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+++TPCG CD+C EI +GR VDL+E+DAASRTKVEDTR+LL+NV YAP R RF Sbjct: 144 CLNCDQGVSSTPCGTCDSCLEIAEGRSVDLLEVDAASRTKVEDTRELLENVLYAPTRSRF 203 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP H KFLLATTDPQKLP T+LSRCLQF+LK + Sbjct: 204 KIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSRCLQFNLKNMVP 263 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L +L EE +A + +L LLARAAEGS+RDALSLTDQAI GDG ++ V AM Sbjct: 264 EEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSLTDQAIGFGDGGLAESDVRAM 323 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L +++A+++ + + ++A+I + A+ ++ A L ++ +LH++ + Q P Sbjct: 324 LGTVDRARVLDVLDAILDNDPKTLLAVIEQIASHAPDYVATLDDLASVLHQVTIAQWVPD 383 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A+ R+ ++A + ++QL+YQ GR E+ +PD R +EM LLR +AF Sbjct: 384 AA-DPTASQSERIAKVAASTTVDEVQLFYQFAAAGRPEVQRSPDPRAALEMVLLRMIAF- 441 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P A VP P+ T + + Sbjct: 442 -------------------------------RPAEVISDAHEVPPPKKTEPPVPPVDSVG 470 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T PV A + AP Sbjct: 471 AGAIETSGSAPSLTHEELRPPVRLAPRVVADQPEKADAIPAPIDPVVDAPTSNPQPGPAE 530 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + P+ + P + W A L+L + E +A Sbjct: 531 SEPLEPPRVAADLPAPAE------------------------WPAFFDDLALRGIAENIA 566 Query: 541 LNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ + S + L S L N + E + V + + A TP Sbjct: 567 MHCELRSVSGRTLSFVLDQSNAGLFNERHVAAIEEQFNAHLQPPVTIEVEVGVVGAA-TP 625 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R + + A +++ D + T FDAE+ SI P Sbjct: 626 AARRAELEAARQKAAEDALAEDPVLTTFLADFDAEVIVGSIEP 668 >UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JMX9_9BACE Length = 623 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 157/640 (24%), Positives = 260/640 (40%), Gaps = 26/640 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS VED R L++ V+ P G++ Sbjct: 63 INCLHPTADGEACNECESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE++ +EHI EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ Q+V Sbjct: 183 NDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGHITYQSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A +E + NE +G + + + + + + Sbjct: 243 LNVLDYEYYFKLTDAFLENRVSDCLLTFNEVLKKGFDGNHFITGLTSHFRDLLVSRDDET 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R + A+ P + + + ++R+ VE+TL++ Sbjct: 303 LQLLEVGASIRDRYQAQAQKCSPQFLYKAMKLCNDCDLNYRVSKNKRLLVELTLIQLAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 +P + S+ Q + + P P+ T +V Sbjct: 363 TGDNDVPGGG------QGPTKQTLKPAFNQGQPSSSSSQASNSQPYPQATHEVSGNYGST 416 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q A + + AA + + KA + + R + Sbjct: 417 APKQPAKPSAPNGSAAVQQPAAPTTNVSAAAHPSPIPKANTEKKIPVMKAGSIGISIRRQ 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK---LV 536 A P A + A + E W ++L + Sbjct: 477 AVQP------QAANNGPVNTAATVPADQTYEDYIFNEKNLNYYWREFATRLPKEEAANAA 530 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPA 595 + + + + + + ++ L +++T+ Sbjct: 531 RMMNMQPHLLKDQTTFEVAVDNDMVQKYMSQLAPQIETHLRQQLHNRKIKMTVRVSAANE 590 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + ++ L+ F EL Sbjct: 591 NLRAYSHVERFQMMS--------KKNPSLLKLKEAFGLEL 622 >UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina loihiensis RepID=Q5QWS2_IDILO Length = 681 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 281/683 (41%), Positives = 373/683 (54%), Gaps = 44/683 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C EIEQGRFVDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCEEGITATPCGKCSACLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKALSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL ++L++E + + AL LLAR+A GS+RDALSLTDQAIA G G VS +V M Sbjct: 181 DDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAIAQGGGSVSIDSVRRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +L+E+++E + E VM ++ + + ++LVE+ LLH++A+VQ P+ Sbjct: 241 LGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVELQSLLHQLALVQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ L R +P IQ++Y+T+L GR+E YA D R G+EMTLLR L F Sbjct: 301 AANVF--ENSDVLKPLLRRMPAELIQVFYRTVLEGRREQAYAIDARSGLEMTLLRLLCFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P S A P + +T A A P Q A + Sbjct: 359 PAEKGDYNITEPDSSAVDMPESKLTAPAQEVTETEAGSVAEVTPQAGPEPQPEAELSEPM 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + E + + + + A Sbjct: 419 QPSYSEHEEPPEFNYSEPDDDAGFYHNDAPPYHMEEAAKSEPVPEPTADQTAEPTPEPAA 478 Query: 481 ------------------------TTPVMQQKEVVATPKALKKALEHEKTPELAAKL--- 513 + + + ++P AL E E + + Sbjct: 479 QSSSGVADLLRVREQLAEKKNPDNSNKTLNSQTENSSPVALTVPAEAEPEAQPEHQPESK 538 Query: 514 -------------AAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSS 559 EA E D W+A ++ + + L QV LN+ + D+ + + Sbjct: 539 DELNEELPELNDDIREAAEVDKWSAMIAGMDISGLARQVLLNSELQKLGDDDWLILVAEE 598 Query: 560 QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESII 619 Q+ L N Q + E+L+ L G+T + P+ TPL +Q I E + +A E + Sbjct: 599 QKSLLNESTSQAVRESLAGLLGATARVDFKVG-VPSQPTPLMVQQHINEYRHQRACEILH 657 Query: 620 ADNNIQTLRRFFDAELDEESIRP 642 D +Q L++ F A++DE SI+ Sbjct: 658 GDAGVQDLQQRFQAQIDESSIQA 680 >UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Bacteroidales RepID=C6ITP2_9BACE Length = 619 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 159/638 (24%), Positives = 266/638 (41%), Gaps = 26/638 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ + T L N ++ ++ HAYLF G RGVGKT+ AR+ AK Sbjct: 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T C C++C + R ++ E+DAAS V+D R L++ V+ P G++ Sbjct: 63 INCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + V Sbjct: 123 KVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ +E+I EP AL ++A A+G +RDALS+ DQ ++ G ++ ++V Sbjct: 183 EDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L + +E + L N+ +G + + + + + + + Sbjct: 243 LNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSKDAAT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L A+I R +E A+ P + + + ++R+ VE+TL++ Sbjct: 303 LPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVAQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + T Q ++ QQ P + AA + Sbjct: 363 TTEGDDVSGGRGPKQTIKPVFTQPAAAQQPQVASATSAQQTTVHTAPSPATAPSAANTAV 422 Query: 420 QRVQGA-TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 ++ Q + + A+ + V K P + +A + Sbjct: 423 RQPQVSVASGAAAPVNTASAPSQSAGISSISKEERKIPVMKMSSLGVSIKNPQRDQAAQN 482 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A V Q + + E A +L E + A ++ + + V Sbjct: 483 TAKNNVAQVQIQPEEDFIFNDRDLNYYWQEYAGQLPKEQV------AIAKRMQVIRPV-- 534 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNPAVR 597 + N+ + + + + +L L S V +T+ + Sbjct: 535 LLNNS------TTFEVVVDNEIAAKDFTALIPELQTYLRGRLKNSKVAMTVRVSEPTETV 588 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + + + L+ F EL Sbjct: 589 RAVGRVEKFQMMAQ--------KNQALMQLKDEFGLEL 618 >UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR3_9GAMM Length = 677 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 267/671 (39%), Positives = 360/671 (53%), Gaps = 32/671 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IARLLAK Sbjct: 1 MSYQVLARKWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++ PCG C +CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGRF Sbjct: 61 SLNCEQGVSSKPCGQCASCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKNMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HIL E + + +L +A A+GS+RDALSLTDQAIA G G ++ Q V+AM Sbjct: 181 EHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIAFGHGALAEQEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+LV A+++ + + ++A+++E +++ LL E++ LHR+A+ Q P+ Sbjct: 241 LGTVDLKRVLNLVRALLQKDADGLLAMVSELDEHTPDYQTLLTELMSTLHRVAIAQAVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ N + LA+ DIQLYYQ + EL AP R G EMTLLR LAF Sbjct: 301 AISNHKGDR-DAIMALAKAGYAEDIQLYYQIAGKSKGELSLAPSERAGFEMTLLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +P + T P P P + Sbjct: 360 QTPPSSIDTLPPLTTQAPETTQPSAAPVKPAVSTPEPVSIPASEEVAPDVGPSETTSEAA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV-----------------QARPVP 463 A ++ L + AS + Q P P Sbjct: 420 VPSEPVNAAETPVKKTPAESVDAAEVLTQPASQPEPATVPEPVSEPEPEPEITVQEDPHP 479 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH--EKTPELAAKLAAEAIERD 521 + + E + ++ +++ P + E P+ AA+L+ A D Sbjct: 480 AGAVDTTSMLEPVAEQPPIETPTEENLLSEPDSASDPESKVVETEPQTAAELSDVATWPD 539 Query: 522 P---------WAAQVSQLSLPKLVEQV-ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 W + +L L + + + A + W+ + + L + + R + N QQ Sbjct: 540 TDLDADPVFWWQVTLHRLGLSGMTKTLFAHSQWRGYENGQLSLVISPNYRKIMNDSHQQY 599 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L +A++ LT +TP W + + +A + + AD ++TL F Sbjct: 600 LLQAITDWLPDCQSLTYEFGAVD--KTPQLWLDQLVQAANDRAYQHLKADAFVETLINEF 657 Query: 632 DAELDEESIRP 642 EL +ES P Sbjct: 658 KGELIQESAVP 668 >UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 Tax=Vibrio RepID=Q7MIV2_VIBVY Length = 730 Score = 382 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 298/733 (40%), Positives = 386/733 (52%), Gaps = 93/733 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+ F +VVGQ HVLTAL N L R+HHAYLFSGTRGVGKTSI RL AK Sbjct: 1 MSYLALARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCG CD CREIE+GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 ALNCEKGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+ IL +E + + RAL ++A AA+GS+RDALSLTDQAIA G+GQ+ T VS M Sbjct: 181 DAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNGQIETDLVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D DQA+ L+EA+ + M I + A G EW+ LL ++ LHRIAM QL P+ Sbjct: 241 LGTIDTDQAIHLLEAISSKQPQVAMDKIQQLAQNGAEWDGLLQQLATQLHRIAMYQLLPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L ++ L+R + P D+QL+YQ L GR +L AP+ R+G+EM +LR +AF Sbjct: 301 SLDKAQPD-AEKIELLSRALSPQDVQLFYQIALKGRDDLSLAPNGRIGMEMIVLRMMAFR 359 Query: 361 PRMPLPEPEVPRQ-------------------SFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 P + Q S A AP P+ P PQ Sbjct: 360 PADVSQANIISAQGANLASAPAAQSAAPQVSTSPAQTAPAMSAKPSSERVAPAERPQAVS 419 Query: 402 TVPLP------ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 P +S Q Q P E A++ Sbjct: 420 HAPSRLASSMNAPSSVAPQPVQTEMPPQYDAPPMDYADYPPMDDMPPMGYGYEDAAALQP 479 Query: 456 RVQARPVPSALEKAPAK---------------------------------------KEAY 476 Q P + +PA Sbjct: 480 EPQPAPQQAPERASPAPGGLTGLRHQLRSQRQGLAQNGGSKKSKAASAEKESVLDRVAQK 539 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + A +Q + P+ + + + + ++ + + P++ Sbjct: 540 QATAAQVSPRQSLAPSEPEVKEDEPYQWRPSQPVVQSKSKELTPTEIKRALEHEKTPEMA 599 Query: 537 EQVALNAWKEES--------------------------DNAVCLHLRSSQRHLNNRGAQQ 570 E++ + ++ + + L LRS Q+HLN AQ+ Sbjct: 600 EKLVAESLEQSEWAKLITQLETAKLVEQLALNSAFNKEGSTIALTLRSHQQHLNTDKAQK 659 Query: 571 KLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 +L AL+ G T L++ TPLE R+ +Y++KL QA S+ D ++Q + R Sbjct: 660 ELLSALNETLGETCHLSVEVG--GQGETPLELRERLYQQKLQQAFTSLENDTHVQFILRR 717 Query: 631 FDAELDEESIRPI 643 F AELD +S+RP+ Sbjct: 718 FSAELDRDSVRPV 730 >UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q1QXJ7_CHRSD Length = 723 Score = 381 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 273/717 (38%), Positives = 363/717 (50%), Gaps = 77/717 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TF ++VGQEHV AL N L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRTFHELVGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G+T+ PCG C+ CREI++GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP +GR+ Sbjct: 61 CLNCRQGVTSVPCGECETCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVT+LSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFTLKNMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L HIL E +A++ +AL LL +AA+GS+RDA+SLTDQAIA G G+V V+AM Sbjct: 181 ERVVGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAFGQGEVRHADVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+L EA+ E + RV+ + A +G ++ +L ++ G+ HR+A+ Q+ P Sbjct: 241 LGTLDHRHLLALAEALAEVDAARVLQEVASLAEQGPDFGGILDDLAGIFHRLAIAQMVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL N + LA D+QLYYQ L GR ++ APD R +EMTLLR LAF Sbjct: 301 ALDNGHGDR-DTLLPLAARFTAEDVQLYYQIALQGRGDMESAPDPRTALEMTLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQS---FAPVAPTAVMTPTQVPPQPQSAPQ------------------- 398 P+ P+ P A + T + Q Sbjct: 360 PQGVPKPPQTPLPIRGAAEGQATASTPTADAPGQLAAAPSQPSPADTPPPAADAAPAHPP 419 Query: 399 -----QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASV 453 QAP + A + A + AT+A Sbjct: 420 SRPDTQAPVAEEEHGAAAGADASSASPADEPAAPGTLESESFATQAFDNEPLESAPPDIE 479 Query: 454 TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 + + + +A + A ++ + + L Sbjct: 480 SAVAAPPEPAAPVTEAVPPVADAQATAAEDALEDALEDEAQRQADADGAVDVDDAPPWVL 539 Query: 514 AAEAIERD----------------------------------------------PWAAQV 527 + D W A Sbjct: 540 DDAQMPADEISAPPEPPSAPDAPATEVAEDADAPAPTAQAPAVATPDTGAFDHARWLASF 599 Query: 528 SQLSLPKLVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L L L +A + EE D + L L SQ + +++ +AL+ G L Sbjct: 600 ASLGLGGLTRNLAAHCIVEEDDGDTLTLRLDPSQSAMLADVHVERMTKALAEQ-GVARRL 658 Query: 587 TIVEDDNPAV-RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + P TP + + + + AQA E++ D +IQ L + F A+L E S+ P Sbjct: 659 HVTVAAIPEGWETPRAQGERLAQARHAQAVEALRRDPHIQMLEQDFGAQLLERSVTP 715 >UniRef50_Q493A4 DNA polymerase III, tau and gamma subunits n=2 Tax=Candidatus Blochmannia RepID=Q493A4_BLOPB Length = 698 Score = 380 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 277/689 (40%), Positives = 405/689 (58%), Gaps = 48/689 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+D+VGQEH++ A+ + SL +IHHAY+ SGTRGVGKT+IARL AK Sbjct: 1 MSYQVLARKWRPKKFSDIVGQEHIIQAITHTFSLNKIHHAYILSGTRGVGKTTIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G T T CG C+NC++IE G F+DLIEIDAASRTKVEDTR+ LDNVQY P+RGRF Sbjct: 61 GLNCEQGTTYTMCGQCNNCKDIELGCFIDLIEIDAASRTKVEDTREFLDNVQYMPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP HVKF+L TT+ QKLP TILSRCLQF+LK L++ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPTHVKFILVTTEYQKLPETILSRCLQFYLKPLNI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +I ++E+I E AL+ LA A++GS+RDALSL +QAI G+ +++ ++ M Sbjct: 181 SQIINQLTYIFHKENINIETSALESLAYASKGSMRDALSLAEQAIVLGNNEITNNVINNM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL--- 297 G + + L L+E++++ + +M I G+ W+ + E+L +L +IA+ Q Sbjct: 241 FGISNIEHPLCLIESLIDEDIHNIMHQIENLTVLGVHWDYVFNEILTILQKIAIGQFLSN 300 Query: 298 -SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N I RMR L+ I P ++QLYYQ L+GR+ELPYAP RMG+EMT+LRA Sbjct: 301 SVQKEDNNVTQHINQRMRRLSNRITPENVQLYYQIFLLGRRELPYAPSHRMGIEMTMLRA 360 Query: 357 LAFHPRMPL------------------PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 LAF P + + + Q Q + Sbjct: 361 LAFRPDVDIANKKNGNGDDNDHILKKSVCSNNNVEINTNDTQHIATDLFQKKNHNQGSKN 420 Query: 399 QAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQ 458 T L +T + +L ++ + TK K S+ ++ R + + LE + + + Sbjct: 421 VLNTEKLKKTNNILLLNFKKSELNSDNTKPKISKSVSSRDTRDITSTILEARSKLLQYKE 480 Query: 459 AR-----------------------PVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPK 495 +++ K + R++ + + Sbjct: 481 RDKLNVIEKKSNLTLESQKKIKDILERFASINTIILKNSSDRFEKINKDLSGYLEFSNNS 540 Query: 496 ALKKALEHEKT--PELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAV 552 K+ L P+ ++ +AI + W +Q+ +LSLPKL +++ +N+WKE S + + Sbjct: 541 NNKENLHRNHQNMPDFIKEILQKAINNNLWISQIYRLSLPKLAKKLVMNSWKEKISSDEI 600 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 CLH+RS +HLN+ + + ++LS G ++L I +DDN A++TP+E +Y+EK++ Sbjct: 601 CLHVRSDYQHLNSTELRNIIQKSLSNNIGIAIKLHIKKDDNYAIKTPMEHLYTLYKEKIS 660 Query: 613 QARESIIADNNIQTLRRFFDAELDEESIR 641 ++ +D ++ ++ FFDAE+DE I+ Sbjct: 661 LIKKEFSSDPYVKMIKSFFDAEIDENDIQ 689 >UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJR0_9GAMM Length = 587 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 260/642 (40%), Positives = 324/642 (50%), Gaps = 72/642 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+QVLARKWRP F D+VGQ HV+ ALAN LS R+HHAYLF+GTRGVGKT+IAR+LA+ Sbjct: 1 MSHQVLARKWRPGRFEDLVGQPHVVRALANALSGDRLHHAYLFAGTRGVGKTTIARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C +C EI +GR +DLIE+DAASRT+V+DTR+LLDNV YAP GRF Sbjct: 61 CLNCETGITATPCGECRSCVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYAPTAGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK + Sbjct: 121 KVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFNLKPMPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E + EP AL L AAEGS+RDALSLTDQAIA G +++ M Sbjct: 181 ALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAYGGDRLTESDACDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L + L++A +G +M + E G +W LL E+ L+HR+A+ QL Sbjct: 241 LGLLPRTRLTGLLDAAFAGDGPGLMQGLQELKGLGPDWSRLLDELAALVHRVAVEQLVRG 300 Query: 301 ALGNDMAAIELRM-RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 G + R RE A I +QL YQ L+ G ++LP+APD +MGVEMTLLR LAF Sbjct: 301 EGGAEDDDAAERWARETAARIDAETLQLTYQILIHGARDLPWAPDAQMGVEMTLLRLLAF 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + Sbjct: 361 R-------------------------------------------------PEGPGEGAVS 371 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 QG T A + A R A R + P Sbjct: 372 VERQGGTPATAPRTGPSADPATARPDATMRSAPPPIPEPPRERAQERVREPDPGSDIGLN 431 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + P + E V +P+ W L + E Sbjct: 432 ESAPRPRDAEPVRSPEPDSGPF--------------------DWHRFAEGLPTGTVRELA 471 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 ++ D +V + + L + +L EAL G +V L IV+ P+ TP Sbjct: 472 LHGELQQLDDESVVIAVAPG--TLYTDRTRTRLKEALETRLGHSVRLEIVDQTQPSQATP 529 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 A E+ A A ++ D +Q L F AEL IR Sbjct: 530 AARLAADAAERQASAETAMREDPVVQALGEAFGAELGTVRIR 571 >UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Tax=Actinobacillus minor RepID=C5S1I5_9PAST Length = 698 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 317/696 (45%), Positives = 410/696 (58%), Gaps = 61/696 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGITATPCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGITATPCGECANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI H LE IL E I +E A++ LA+AAEGS+RD+LSLTDQAIA + V+ AVS M Sbjct: 181 TQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSLTDQAIAVTNANVTLSAVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L L+ A+ A+GE+VMA+I A +G++W LL ++ +LH+IAM+QL + Sbjct: 241 LGLIDDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLLNDVAEVLHQIAMLQLVKS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A + LA+ + P DIQ +YQ +L+G+KELP AP++R GVEMT LRALAFH Sbjct: 301 AEQEESA-----IHFLAKQMAPEDIQFFYQVILMGKKELPLAPEQRSGVEMTFLRALAFH 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQV------------------------------- 389 P+ + Q Sbjct: 356 PKRTEAINLNVAPQQTQNSVAPQQIVQQPTRTAQDNIAQLRERLAKESSSTQAVQNNEHF 415 Query: 390 PPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA-------------- 435 Q+A +P V P +T A K + A Sbjct: 416 AKVSQNATAYSPNVNAPTSTETPTQGVSAALVAMQARKQLQETQAQLDQTEKKKPELVIP 475 Query: 436 -------ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQK 488 L + P E YRW P ++ + Sbjct: 476 KPINTNKQPANLQERFMNLAVAQQQQTTREKTVTKPVATAKPTNDEDYRWTWLNPELENQ 535 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-E 547 + A P +K+A+ E+TPEL K + + E+D W V++L+L L Q+ALN++ Sbjct: 536 DESAKPSDIKRAILQERTPELVEKTISLSCEQDKWCKLVNELALGGLSRQLALNSYLSDT 595 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 +N + L L+ + HL+N ++Q LA AL + ++ +TPLE R+AI+ Sbjct: 596 QNNELHLVLKPAMAHLDNLESRQSLATAL---LEKGFTYQLTLGESAENKTPLEIRRAIF 652 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 E+ A+ ++ +D + LR+ FDAE+DE +IR + Sbjct: 653 EQLTVDAKNALFSDEKLMLLRQAFDAEIDESTIRAV 688 >UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 Tax=Neisseria RepID=B4RLX5_NEIG2 Length = 736 Score = 375 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 238/702 (33%), Positives = 344/702 (49%), Gaps = 62/702 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TF+D+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 30 MTYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 89 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PCGVC +C +I+ GR+VDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 90 SLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 149 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 150 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 209 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L+ E IA++P ALQLL RAA GS+RDALSL DQAIA G G+V+ V M Sbjct: 210 QQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D L+ +V +GE ++A E AA + ++ L E+ LL ++A++Q P+ Sbjct: 270 IGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPS 329 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL +D + LA+TI IQLYYQ + G+++L APD G MTLLR LAF Sbjct: 330 ALAHDDPD-SDILHRLAQTISGEQIQLYYQIAVHGKRDLGLAPDEYAGFMMTLLRMLAFA 388 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + T + + P+ + AA Sbjct: 389 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEADAAQTPVQTASAAAMPSEG 448 Query: 421 RVQGATKAKKSEPAAATRARP---------------------------------VNNAAL 447 + G +++ P A Sbjct: 449 KTAGPVSHQENNDVPPWEDAPDKTETAAGTARTSAKSIQTASEAETPPENQVSKNKAADN 508 Query: 448 ERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTP 507 E AS+++ P+ + + E + +A P + Sbjct: 509 ETEASLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGFPDNDCPPEDGVEIPPPDWA 568 Query: 508 EL-----------------------AAKLAAEAIERDPWAAQVSQLSLP-KLVEQVALNA 543 + + WAA V + + A ++ Sbjct: 569 NVLPADTAGGGTDEEAEAGGIGGNNTPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHS 628 Query: 544 WKEE---SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV-EDDNPAVRTP 599 E + L + + R ++ K+ + L+ G + L D TP Sbjct: 629 AWTEYRSDTGLMVLAMTAEARATADKKRLDKIRDTLAQAYGLQLTLQTEDWRDEAGRETP 688 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + E +A+ + AD Q + + F A+ ES+ Sbjct: 689 AMQDKRVQAEDRQKAQALLEADPAAQKILQAFGAQWQPESLE 730 >UniRef50_A0YC05 DNA polymerase III subunits gamma and tau n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC05_9GAMM Length = 588 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 251/627 (40%), Positives = 343/627 (54%), Gaps = 41/627 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 +VGQEHVL AL N L R+HHAYLF+GTRGVGKTSIAR+LAK LNC+ G+++ PCG C Sbjct: 1 MVGQEHVLKALINALDHNRLHHAYLFTGTRGVGKTSIARILAKCLNCDVGVSSEPCGQCS 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 C I +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP GRFKVYLIDEVHMLS +SFN Sbjct: 61 ACLSISEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTAGRFKVYLIDEVHMLSTNSFN 120 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKTLEEPP HVKFLLATTDPQKLP TILSRCLQF+LK + E+I L+++L +E I Sbjct: 121 ALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFNLKNMSPERIVVHLQNVLEQEMIT 180 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 +E AL LL R+A+GS+RDALSLTDQAI+ G G++ V +MLGT+D +VEA++ Sbjct: 181 YEEPALWLLGRSADGSMRDALSLTDQAISFGSGKLLEADVRSMLGTIDRSAVYEIVEALI 240 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 NG +V+A +N A ++ + L E+L LLHRIA+ Q P A N ++ ++ Sbjct: 241 AENGAQVLAAVNNMAEHAPDYLSALEELLMLLHRIAIAQAVPDATDNSFGD-GAKIIAMS 299 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAP 377 + D QL+YQ L GR++L APD R G EM LLR LAF Sbjct: 300 ALLTAEDTQLFYQLGLTGRRDLSLAPDLRSGFEMVLLRMLAFK----------------- 342 Query: 378 VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAAT 437 + E V +Q ++ T S Sbjct: 343 ----------PAGIPQLPERSLTNSPVSVEAPQPVKKPDAGVQSIKADTPVSFSSKLGPA 392 Query: 438 RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKAL 497 ++ VN+ L+ +VT + P+ + + V A Sbjct: 393 QSSVVNDIQLQVDGAVTKAIGEEPLHAVTVS-----------ESVAVPLAAPAPAPVPVA 441 Query: 498 KKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHL 556 + E + + L+ + + D W A +L +V +A + + +DNA+ L L Sbjct: 442 VLVDDTEMSLDEKGPLSLDQLRPDSWNALFERLGFGGVVGNIASHCILVDVTDNAMSLQL 501 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 ++ L + ++ E L++ + V + I + TP + + E+ A Sbjct: 502 DAANATLFSDSYTARIQEHLTVTLNTPVTVKIEV-TPLSAETPALRKNRMQNERREAALL 560 Query: 617 SIIADNNIQTLRRFFDAELDEESIRPI 643 S+ D N+Q L FDA LDE S++P+ Sbjct: 561 SLKNDPNVQVLVSDFDAVLDEASVQPV 587 >UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I98_THICR Length = 696 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 255/697 (36%), Positives = 372/697 (53%), Gaps = 58/697 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ VLARKWRP+ F+++VGQ HV+ AL+N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MTDTVLARKWRPKNFSELVGQTHVMQALSNALDQQRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PCGVC CR I++GRFVDLIE+DAAS+TKVEDTR+LL+NVQYAP +GR+ Sbjct: 61 ALNCEQGITSKPCGVCSTCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYAPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDP KLP+T+LSRCLQF+L L + Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSRCLQFNLMRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +IL +E + E AL ++A++A+GS RD+LS+ DQAIA G G+V AV AM Sbjct: 181 PQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAYGGGKVQYDAVQAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L+++ A+ + + + +I + A G+++ AL +++ LH+++M+Q+ Sbjct: 241 LGLVDQQFTLNILSALANESADELKEVIQQLALMGVDYTALNGQLIEALHQMSMLQVLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +++L+ + P IQ+ YQ L+ ++++ APD R+G EM+LLR LAF Sbjct: 301 -LTESSLIEVEMLQKLSEQLSPERIQVLYQIALLAKQDMALAPDIRIGFEMSLLRMLAFK 359 Query: 361 PRMPLPEPEVPRQSFAP---------VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 P + + A P +P QP +A + P Sbjct: 360 PVFSETMSSMEQTEPEEGMSRQENVKTARPGQNEPAAIPNQPAAADEARTNFEAPSHFEA 419 Query: 412 VLAARQQLQRVQGATKAKKSEP--------------------------------AAATRA 439 A + + Q A ++ +P A Sbjct: 420 PSAPQSSMPETQAAPQSSAPQPSGEMDHLTDLKARLDSTLGKSEAPIEHRENHDAEVPTF 479 Query: 440 RPVNNAALERLASVTDRVQARPVPSALEKAP-------AKKEAYRWKATTPVMQQKEVVA 492 + +LE+ AS + A ++A +A P + + + Sbjct: 480 DVPSGQSLEQSASFLTETRQEDDRPVESAAAFQASSHVPVQKAVTEEAMAPAFESPGMES 539 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERD-----PWAAQVSQLSLPKLVEQVALNAWKEE 547 + ++ E E E A + D W A ++QL L + ++A + + Sbjct: 540 VTPSSQEHFEQEPVSEAVVADAPIEMNADTASVTDWIALITQLQLEGMAAELARQSILVK 599 Query: 548 SD-NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D ++ L + Q H A Q+L E + G + I D TP + A Sbjct: 600 RDAQSLTLSIDPEQVHAKTELALQRLEEQVKAQLGVRL---IFVDYPEDHWTPAKHFAAE 656 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + + A ESI D +Q L + + ++ E SIRPI Sbjct: 657 AKARQGNAAESIRNDAVVQNLIQTLNLKVIESSIRPI 693 >UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PSN6_CHIPD Length = 634 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 156/643 (24%), Positives = 264/643 (41%), Gaps = 20/643 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RPQ F+ VVGQ H+ T L N + ++ HA+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPQNFSTVVGQSHITTTLKNAIRNSQLAHAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE C C +C +G ++ E+DAAS V+D R L++ V++AP G++ Sbjct: 63 INCENLQPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F K + + Sbjct: 123 KIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFKRITI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I ++EHI E AL L+A+ +G +RD+LS D+ ++ G ++ Q Sbjct: 183 QDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGGHLTYQNTLEH 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D +++ +++ + + + +E +G E + L L + M + Sbjct: 243 LNILDYDYFFRVMDTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKV 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L ++ R +++A + P+ + L A ++R+ VEM L++ Sbjct: 303 LHLVEVSGNLKDRYKQMAGKVSPSYLITALHLLNETEINYRMARNKRLHVEMALIKLCFL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L + + P ++ A +A T+ +AA + Sbjct: 363 QQAVTLVSDDQTGEVVKKKLVADGAQPQKLRSSFAQAAPEAKPAAGQAATTTSIAANEAR 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++ + V A Sbjct: 423 LTIETPV------NNTGVPPQTVTQPAQPVQQQPPVSQAPANTQHTSSYNTTTTATAPKP 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP---KLV 536 A P K A + + P A W + + +V Sbjct: 477 AQAPTNAPKLTGLAAMKEALASKQQTQPAKAVIPMTAGALSVYWDEFIDRFRQANKMTVV 536 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST---VELTIVEDDN 593 + L K +S +C+ R+ + + ++ + + L + E Sbjct: 537 SNLQLATIKLQSAEEICIVSRNIVQFRFMEEEKLAISAFFKDKFQNPGIVLTLQLDESQQ 596 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 P Q + ++ L+ + ELD Sbjct: 597 TQDIGPAPLSSR------EQFLKMTEKYPLVKELKEKLNMELD 633 >UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMH2_MOOTA Length = 589 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 177/604 (29%), Positives = 272/604 (45%), Gaps = 46/604 (7%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ YQ L R+WRP+TFA+VVGQEH+ L N L GR+ HAYLF G RG GKTS A++LA Sbjct: 1 MAQYQALYRQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + +NC PC C NCR I G +D++E+DAAS +++ R+L++ + P GR Sbjct: 61 RAINCLAPREGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPVEGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHML++ +FNALLKTLEEPP H F+LATT+P+K+ TILSRC +F L Sbjct: 121 YKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVS 238 V+ I +L+ + + EP AL LL+R A G LRDALSL DQ +ASG G V+ V+ Sbjct: 181 VQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASGTRGPVTAGQVA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LGT D L+L +A+ +G V+ L+++A A GIE LL ++L + ++++ Sbjct: 241 VTLGTARLDTLLALTDALATGDGAGVLNLVDKALASGIEPRRLLEDLLDHTRNLLLLKVD 300 Query: 299 PAA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A L + ++ AR + + L G L + R+ +EMTL Sbjct: 301 PGAGSLTGLLPEEVEQVAAQARQFDHHRLLDLMERLQQGGAALRRSNQPRVILEMTLAGF 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L A + + + + S+ Sbjct: 361 L-----------------------VAPGPSLEGLARRVAELEARLAALEGSAPSRTREKV 397 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + +G A + N+ V + + P Sbjct: 398 ATRNQGEGGRPPVAPGSRADAGGQERGNSGPLEAPGAGSPAGRARVINRSREFPQAAGRD 457 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R P A+ A+ ++ W ++ + Sbjct: 458 RAGLAGPETATGLEP---------------GSPASPGLELAVVQEHWPEVLAAARRESIQ 502 Query: 537 EQ--VALNAWKEESDNAVCLHLRSSQRH--LNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 Q + + + L +++ L G +QK+ +AL+ + G +++ I Sbjct: 503 LQAFLREGEPVAIDGDTLTLAVKADFHRGMLEQPGNRQKVEKALAAVFGRPLKVVITSGK 562 Query: 593 NPAV 596 Sbjct: 563 PSPP 566 >UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina baltica OS145 RepID=A3WNZ0_9GAMM Length = 640 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 276/645 (42%), Positives = 367/645 (56%), Gaps = 9/645 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP F VVGQ+HVL L + L R+HHAYLF+GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLHHAYLFTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C +C EIEQGRFVDLIE+DAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 ALNCERGVSARPCGECPSCEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYRPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT++SRCLQF+L+ALD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFNLRALDR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QLE++L E++ H+ +AL LLA++A+GS+RDALSLTDQAIA G G+V ++V M Sbjct: 181 EQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIAQGQGKVQVESVQRM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D L++A+ + V +E + + +L E+ ++HRIA++Q PA Sbjct: 241 LGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNELQRVIHRIALIQQIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R +P +QLYY+ ++ G+KE PYA D + VEMTLLR L+F Sbjct: 301 --MMGAEDKTNTTEALLRKLPAEVLQLYYRIVIEGKKEAPYAVDPQSAVEMTLLRLLSFT 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E + P + +T ++ + A Q + + A Q + Sbjct: 359 FENPESGEEALTR--PPESNLDTITQSEQAEEAAHAGQHSGDTSIQSEADDTSALEAQQR 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK--KEAYRW 478 ++ + A A + A E LAS+ + Q EK ++ E Sbjct: 417 DIEAQAAQHRMSRPAEGVAEDNSVAPDEGLASLLNMRQDLSGHQEPEKKNSEIDIETPSE 476 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + P Q + A P + A D WAA V ++ L Q Sbjct: 477 QPHLPSRQPDKQHAEPVQTTPVSLSHIQQRFDSSTRRAADV-DSWAALVDATAVQGLTRQ 535 Query: 539 VALNAWKEESDN-AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + LN+ E+ + C+ + Q+ L + EAL + + E + + + Sbjct: 536 LLLNSVLEKVGHQQWCIWVTEEQQSLLSEKTVALAREALCEVLSAQGEYRFLVG-SQQMS 594 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 TPL +QAI +L QA+ + D+ L FDA DE SI Sbjct: 595 TPLLIQQAIDHYRLEQAKLWLQNDSGFNELLNSFDAVTDETSISA 639 >UniRef50_C6BXI6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BXI6_DESAD Length = 638 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 180/650 (27%), Positives = 285/650 (43%), Gaps = 24/650 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQTF +V GQE V T L+ + ++ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSTSNLTAKYRPQTFGEVAGQEAVKTILSRAAAQDKVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC CDNCR+I G VD++EIDAAS KV+D R L +++ YAP R+ Sbjct: 61 ALNCKNAPTAEPCNECDNCRQITAGVGVDVVEIDAASHGKVDDARRLKEDIGYAPIEFRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP H F++ATT+ K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTVQAFNALLKTLEEPPPHATFIMATTETHKFPATIISRCQHYAFKMLTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ L +ILN E I E A+ L+A+ GS+RD++SL Q +A G ++ + V ++ Sbjct: 181 DELIAHLSNILNMEQIEFEQGAVDLIAKRGAGSVRDSMSLLGQVLALGSEKLLEEDVRSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +L++A+ + V + + RG++ + E+ + ++ S Sbjct: 241 LGLAGRDVFFTLMQAIHGRDLVAVGDTVQQVLGRGLDLGFFIRELGNCWRNMFLLNQSGE 300 Query: 301 ---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA- 356 L + + A+T + I +Q + G++++ + + M +E+ LL Sbjct: 301 RAVPLLGLSSEEAAEFMKWAQTFDRSFIHACWQMTVDGQRKVMTSLEPAMALELLLLNMA 360 Query: 357 --LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 S A P Q PPQ Q P +T + Sbjct: 361 SLTDLISMERAGALASAAPSPQQAPQAAPAVPNQAPPQTPPPSQPMGQQPGGQTPPWQNS 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 +Q +Q+ RP+ A S+L A + Sbjct: 421 PQQGMQQQVPPQNQGMQPQGMGANGRPMGRTESGSPAGNRSANDMGADDSSLPDAAGLQT 480 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P + + P + P A ++ + + V+ Sbjct: 481 DSDLNSLVPQSENPAPESIPPLERVPEPAPAKPSFPASVSGPRDF-EGFLQYVADSGANG 539 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQR--HLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + E D + L +S + R ++ + +S G VEL I Sbjct: 540 STSGL-SKCKGELIDGKLVLTCANSFHQGQVAGRESRGVVERLVSEYFGPEVELEIQISS 598 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 R+ + R+ + + +++ + F A + SI P Sbjct: 599 KGKRRS------------RQEIRDDVESHPDVKRVMDAFGASII--SIDP 634 >UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQ74_ACIBL Length = 632 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 190/644 (29%), Positives = 306/644 (47%), Gaps = 31/644 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ F++V+GQ+HV L N + RI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MSYQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC+ + PCGVCD+C+E++ G+ VD+IEIDAA+ +++ R+L + +Y PAR Sbjct: 61 ALNCQSADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARD 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y++DE H ++ +FNALLKTLEEPP H+ F++ATT+P+ +P TI SRC F A+ Sbjct: 121 RFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I QL I +E I E AL +LA A +GS+RDALS+ DQAIA+ Q+ T V Sbjct: 181 KFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVR 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ D ++ + + E V+ I++ G + + L + +++ Sbjct: 241 GLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRNAMVAKVA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +AL + R+ +A D+ + Q +L +L Y ++R +E+ LL+ Sbjct: 301 GKDSALLQISSDERERVARVAEQFSEEDLARFLQIMLRTHSDLGYKQEQRFHLELGLLKL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + +PL E S AP + V AP A + P P +S+ AA Sbjct: 361 VHAQRMLPLEELLSGSASAAPSSAPRASVAAPVSRPSSPAPSAATSRPSPFESSRTAAAP 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + + A AP A Sbjct: 421 RPSPFEVDRARKNEPKAEADAEITAKTPEFTAPA------------------APTPMSAA 462 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK-- 534 + P +V + A+ P AA A E A +++L Sbjct: 463 PARGYEPQSAPAPMVTSSVGSAVAVAEVAPPPPAAAPAGETNIPAIRDAVLNELETAGQN 522 Query: 535 -LVEQVALNAWKEESDN-AVCLHLRSSQRHLNN-RGAQQKLAEALSMLKGSTVELTIVED 591 LV + W ++ V + L + L+ ++ + A++ G ++ ++V Sbjct: 523 VLVHTLETGVWAANANEITVKVALSPAMIDLSMGPEVKKLVTAAVNKATGRPLKFSMVGG 582 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 +PA R A+ ++A + + ++ F AE+ Sbjct: 583 ADPATLAKPAPRTAVGPSARSRA----MQHPLVNYMQEKFGAEV 622 >UniRef50_Q7UQ66 DNA polymerase III gamma and tau subunits n=1 Tax=Rhodopirellula baltica RepID=Q7UQ66_RHOBA Length = 676 Score = 367 bits (940), Expect = e-99, Method: Composition-based stats. Identities = 174/642 (27%), Positives = 275/642 (42%), Gaps = 13/642 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY V+AR++RP+ F +VGQ+HV AL + R+ HAYLF+G RGVGKTS AR+ AK Sbjct: 36 SYVVVARRYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKA 95 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LN G TA P D + I+ G VD+IEID AS +++ R L NV P+R R+K Sbjct: 96 LNHPDGPTANPDSESDVAQAIDSGEDVDVIEIDGASNRGIDEIRSLRANVGVRPSRSRYK 155 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F ++ + Sbjct: 156 IYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESD 215 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I+ E E AL+LLAR A GS+RD+ SL +Q ++ DG ++ V ML Sbjct: 216 KIVQRLREIVEAEDNTVEDEALELLARRAAGSMRDSQSLLEQVLSFSDGHLTADHVHTML 275 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DD + L EAM + + ++ I+EA A G++ L +MLG + V + A Sbjct: 276 GTADDQRLHRLAEAMADRDASAALSQIDEAIAAGVDAGRLAEQMLGYFRDLMAVAVGCEA 335 Query: 302 LGNDM--AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A++ + ELA + + + ++ R+ +E T+++ Sbjct: 336 SLMRYAAASMHGSLGELAGRWGLQTVLAIVGLVDETLVRIRHSVHARVLLEATVIQVCHL 395 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + PT +P +++ A Sbjct: 396 PDLQAISDLTAAASGAGGGKSAGEKKKRVAVASSSPSSAAMPTSAVPSSSTSPAAGSDAK 455 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 RV AA + V +A PA + Sbjct: 456 VRVDSPAAPSGDHRAATSATASVAAGVPSGTP-----PVNSGSTAATSSQPAPQSQAVPS 510 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + A T L + W+ + ++ Sbjct: 511 GGVATAVATPPQSEGAENSAAANESTTSTDGYPLISGDEATSSWSQVLQEMDPMTATLAK 570 Query: 540 ALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 A + + + ++++ LS + G L Sbjct: 571 AAERVDSPEPGVLRMIFPGNSGLAFSRCQMPEHKEEILRTLSRVTGRRATLQFEATAVKK 630 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P+ + + ++ + RE I A+ +Q+ AE+ Sbjct: 631 IE-PVAAAKPKNKNRMQRMRE-IQANPLVQSCVELLGAEIVR 670 >UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH32_BDEBA Length = 621 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 172/643 (26%), Positives = 286/643 (44%), Gaps = 59/643 (9%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV+ARKWRPQ+F DVVGQ H+ L+N L GR+ HA LF+G RG GKTS AR+LAK Sbjct: 18 SYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKA 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L C PC C +C EI G +D+IEID AS V+ R+L D V + P+ G++K Sbjct: 78 LRCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKYK 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP HV F++ATT+ K+P TILSRC +F + + Sbjct: 138 IYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTR 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L+ I + E + + AL ++AR +GS+RD+ SL DQ I +G ++ +V +L Sbjct: 198 SITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEIL 257 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ---LS 298 G D + A+++ N + V+ +I + AA G E ++L ++ + +++ Sbjct: 258 GLTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMIRNLLLIKVSEAQ 317 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + E+A+ +P DI + + L G ++P A D R+ +E+TLLR + Sbjct: 318 ASQILEMPDSELQALSEMAQRLPEEDIHMLFDMALKGGSDIPRAQDPRIVLEVTLLRMAS 377 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L Q + P + P L + Sbjct: 378 APKLVDLKTLL----------------------QGGAIPSHSAGGARPYVPPVSLPVKGH 415 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + A +A ++ A+P +A + Sbjct: 416 DRIEESQKVLDGPTGLEAMKAALNKASSAASSLKSNPAPAAKPAATAPAAPVPAAQPTPV 475 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + P K+A+ + ++ W V L + Sbjct: 476 VESKP----------------------------KIASGSTSKERWVNFVELLRQDDALFA 507 Query: 539 VALNAWK--EESDNAVCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + +E + L + + + + ++KL + G+ ++ Sbjct: 508 AKVENLLFVKEEGKLISLGVPVKLAFLKDQMADAQVRKKLQGFIDSYWGAGYSFEVLMSR 567 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 + + +Q + R II + ++ + F ++ Sbjct: 568 DQVGESAQAIQQKKVQMAEEDLRNKIIENPMVKAAQTVFKGQI 610 >UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD56_9FIRM Length = 628 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 173/655 (26%), Positives = 268/655 (40%), Gaps = 48/655 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R WRPQ F +VGQEH+ AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MSYVALYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PC CD+CREI +G D+IEIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+P TI SRC +F + + V Sbjct: 121 KVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ + +I EP AL+L+A A+G +RDA+ L DQ V+ + V + Sbjct: 181 DDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA-NPVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +LVE + + + L+N+ G + +L E+L + + + Q PA Sbjct: 240 LGIAGRDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYMRALLLYQADPA 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ + + I + ++ + ++ E+ L Sbjct: 300 YQEIYLTDTAENLKTVEPLFTRSRILAATARIHEASLDVKRSLRSKIVAEICLYDLCRGE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V V P + ++ S + A Sbjct: 360 GESPAALMSRIETLEGKVTHLMAGGAPAVSPAFEPPREKRSKTQEAAYASPMATAPDMPS 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q +E AA A+ E+ AS Sbjct: 420 VTQKEASFPSAEGPAAIPLEKRQEASFEKQASA--------------------------- 452 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V Q+ + E+ + + + A + W + L + A Sbjct: 453 ---VPQRAGQKMEAEGASFTPPFEEKTDAPRQPSDLAGAQRLWNGVLQGLKQRHKMGFFA 509 Query: 541 ---LNAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + + + ++ L + ++ L G E + + Sbjct: 510 YAREATPLDFDGKRLTVGTATQLAKDRLERNDLRDEVLAILKAGTGQNFEFAVEQASEKQ 569 Query: 596 VRTPLEWRQAIYEEKLAQ------------ARESIIADNNIQTLRRFFDAELDEE 638 + + + + +E ++ F L ++ Sbjct: 570 MEAARKTAPRVASRPQHKAAPPAPPKEAPLPKEDDELPETVKRAMMVFGGSLVKD 624 >UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetella RepID=A9HZ16_BORPD Length = 736 Score = 365 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 226/709 (31%), Positives = 326/709 (45%), Gaps = 70/709 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARKWRP++F +VGQ+HV+ AL + L R+HHA+LF+GTRGVGKT+++R+LAK Sbjct: 28 MTYLVLARKWRPRSFDTLVGQDHVVRALTHALDSQRLHHAWLFTGTRGVGKTTLSRILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C C EI+ GRFVD +E+DAAS VE+ LL+ YAP GR+ Sbjct: 88 SLNCETGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 148 KVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L+ +L +E +A E AL+L+A+AA GS+RDALSLTDQAIA G ++ AV M Sbjct: 208 DAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSLTDQAIAYSAGNLTEDAVRGM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D + L+EA+ + V+A+ +E + RG+ + L ++ LL R+A+ Q P Sbjct: 268 LGTIDQRHLVRLLEALPAGDATGVLAVADELSTRGLSYAGALADLAVLLSRVAIEQRVPG 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + + LA + P +QL+Y + R EL APD G M LR LA + Sbjct: 328 ATPADDP-LAADISRLAGVLHPDAVQLFYSVAVHSRGELSLAPDEYAGFVMACLRMLALN 386 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P T +AP + T + Sbjct: 387 GQAGPATALQAPAAATPRPEAVAATAASPAAPAAAAPVASATAAPVAQAAAAAPPPPAAV 446 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY---- 476 + + + + A A N A + + + + A Sbjct: 447 QPRAGAASGAAPAAPAVPVAQTANPAPQAQGAAPAAPVSSAPAAQPAAADTPPWEDLPAT 506 Query: 477 ------------------------------------RWKATTPVMQQKEVVATPKALKK- 499 A E + Sbjct: 507 PAAAEPAAAAKAPPAAALAVTPPAAQAKAPPPDADGEPPAWVDEDIPDEAQGGYVPAAEF 566 Query: 500 --------------ALEHEKTPELAAKLAAEAIER----------DPWAAQVSQLSLPKL 535 A E P + A + W ++L + L Sbjct: 567 TADPDDEFETLATGASAAELAPVARPQPAPRRARQAAPRLDSMSAADWPGLAARLPVTGL 626 Query: 536 VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 ++A + W +AV L + + + L ++ +L L G + L I Sbjct: 627 AAELARQSEWAGVHGDAVVLRV--AVKTLAESESRVRLQTVLCEHFGQGLRLEIEVGATG 684 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 T Q + A ++ AD +Q L F + S+R + Sbjct: 685 DG-TAHAVAQIERAARQQAAEHAVAADPFVQALTTDFGGRVIPGSVRAV 732 >UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Tax=Pasteurellaceae RepID=B8F323_HAEPS Length = 670 Score = 365 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 316/676 (46%), Positives = 419/676 (61%), Gaps = 41/676 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F++VVGQ+HVL+AL NGL GR+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGI+A PCG C NC+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P GRF Sbjct: 61 GLNCETGISADPCGQCANCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHL+AL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLRALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ LE IL +E I +E AL LA+AA+GS+RDALSLTDQAIA + ++ VS M Sbjct: 181 SQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIAVSNVNITLPIVSQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DD Q L LV+A+ A+GE+ MA+I A +G++W+ L + LH+IAM+QL Sbjct: 241 LGLIDDHQPLELVQALANADGEKAMAVIQSVAEKGVDWQQLFSDTAETLHQIAMLQLLKH 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + LA+ I P D+Q +YQ +L G+KELP+AP++R GVEMT+LRALAFH Sbjct: 301 AHQEETP-----LHFLAKQISPEDVQFFYQVMLTGKKELPFAPEQRSGVEMTILRALAFH 355 Query: 361 PRMP------------------------LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P+ L E +Q+ A T + Q + S Sbjct: 356 PKNMATTTTVATPTTPVAPVQSPNSISQLRERLAQQQNSAQTVTTQAVNTEQHFAKNLSQ 415 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS---- 452 P +PT E+ S L A Q Q+++ + + + + ++ Sbjct: 416 PTASPTETNTESISPALKAMQARQQLKAKQEQQDEKKKSDLTPIQPPKTVNKKSVQQGLM 475 Query: 453 ----VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 D+ Q A E YRW P ++ +E P +K+A+ E+TPE Sbjct: 476 NLVTAQDQRQQIEETPQKNIASQNDEDYRWTWLNPELENQEEAPKPSEIKQAILQERTPE 535 Query: 509 LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRG 567 L K ERD W+ V+ L L + Q+ALN+ + ++N + L L + HLN+ Sbjct: 536 LVKKTIELGCERDKWSRIVNSLKLGGVSRQLALNSYLESHNNNHLLLVLNPTMAHLNSNE 595 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 A Q L ALS + ++ +TPLE R+ I+E+ +A++++ AD ++ L Sbjct: 596 ATQSLYNALSQ---QGFSSEMRIGESDEFQTPLEIRRVIFEQLTQEAKQALQADKKLKLL 652 Query: 628 RRFFDAELDEESIRPI 643 ++ FDA++DE +IR + Sbjct: 653 QQAFDAQMDEATIRAV 668 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 160/588 (27%), Positives = 259/588 (44%), Gaps = 5/588 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L R WRPQTF D+VGQ H++ L N + R+ HAYLF+G RG GKT+ A++LAK Sbjct: 1 MSHIALYRAWRPQTFQDMVGQRHIIQTLQNAIREDRVSHAYLFNGPRGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G PC CD CR I G +D+IEIDAAS +++ RD+ D V+YAP+ R+ Sbjct: 61 AVNCERGPAEEPCNECDACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + + Sbjct: 121 KVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQRFDFRQVSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+ +L I +E I E A+ +AR +EG +RDA+SL +Q A G +++ + Sbjct: 181 EEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGSRITLDGAVDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + DQ +L EA+ + N +M L+ G + + ++ + +++L+P Sbjct: 241 TGGMAADQFYALAEAIRDRNVAAIMPLVEGLTQAGKSADKCMENLIFYFRDLLVLKLAPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + R R +A + TL + ++ +A + E+ L++ Sbjct: 301 GAVTERVVDAERFRGMADAFSSERLFKMIDTLNTYQSDMKHASQPQTLFEVALMKICTIG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + + ++ Sbjct: 361 NESAGGTGSGGGAATSSPPAASAEVQRLRQQVEILERKLEQLIQNGGAAGSGAGDGGAVR 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + ++ A +R A+ + + K+ A Sbjct: 421 QPASQSRRPGFGGGGAAVSRSTVKLDPFVAAAGSPGTGQVRMKWNEVLHRVKEARITVHA 480 Query: 481 TTPVMQQKEVVATP--KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + A K + E T A + E + +D + + Q Sbjct: 481 WLVDGEPVAATDSTILVAFKNTMHRETTERPAHREIIERVMQDVFGNPFKLATCMLKEWQ 540 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 A + E+ + L Q + EA+ L G + + Sbjct: 541 NAASRSGEQEGETLELQ--PDAIDTGEEQRPQWVEEAVK-LFGEDLVV 585 >UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1K9_SLAHD Length = 807 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 181/615 (29%), Positives = 283/615 (46%), Gaps = 12/615 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L RK+RPQTF DVVGQ HV L N L + HAYLF G RG GKT++ARLLAK Sbjct: 1 MA-EALYRKYRPQTFDDVVGQTHVERTLKNALQQDHVSHAYLFCGPRGTGKTTMARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR 119 L CE G T +P G C+ C+ I +G D+ E+DAASRT V++ R+ ++ VQ+AP RGR Sbjct: 60 ALLCEHGPTPSPDGTCEECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAPTRGR 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+P TILSRC +F L Sbjct: 120 YKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQRFDFHRLS 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+I +L + E + E AL L+AR A+G +RDAL+ +Q IA G G V+ +A Sbjct: 180 NEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAFGAGNVTMDVANA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG+LD + + + + + E G + ++ + + + L+ Sbjct: 240 ALGSLDVNDMSEIAGHIGRRDAAACFTWMAEYVETGADLAQFARDLASYVRDMYVFSLTD 299 Query: 300 AALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+G ++ + ++ E A+ + L L + + R+ E+ L R + Sbjct: 300 GAVGLSSASSSNQQQLAEDAKLYGTDRLAYILDVLGDLNTSLRSSTNPRLSFEIALTRMV 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-TSQVLAAR 416 + L + + +AP A Q + A+ Sbjct: 360 RPQSDLTLEALAARIEVLEKALASGQFAAPAGTTPAAAAPVPASVPASQSGYAGQAVPAK 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V ++A+++ A + Q RP+ + + +A Sbjct: 420 PARDEVPAPSRAQEAAARMRAARSQQAAPQPRPQAQPAPQAQPRPMAQPQAQPAPQAQAT 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL- 535 A P +Q + + +LAAKL A + W A V+++ + Sbjct: 480 PQPAVQPQVQARPASQAQPRPQAPAAAAAPADLAAKLTNPAALQRGWQAAVAEVKRERSI 539 Query: 536 --VEQVALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 ++ N E +A+ + S + + + +A AL G V IV Sbjct: 540 YGALLMSANVVSEVDGSAMRIEFSSENTMAFNMVQKPDVTETIASALGHAFGMQVPFKIV 599 Query: 590 EDDNPAVRTPLEWRQ 604 ++++ A P Sbjct: 600 QNESMAPVAPASPFP 614 >UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 Tax=Firmicutes RepID=D1BPK5_VEIPT Length = 895 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 153/648 (23%), Positives = 267/648 (41%), Gaps = 25/648 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RK+RPQTF DVVGQ V L + ++ HAYLF+G RG GKTS+A++ A+ Sbjct: 1 MAYIALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T PC C CR I G+ +D++EIDAAS +++ R L ++V++ P GR Sbjct: 61 AINCEHGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ ++NALLKT+EEPP HV F+ ATT+ +KLPVTI+SRC ++ + + Sbjct: 121 KVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L ++ +E + A QL+A A+G LRDALS+ DQ G ++ Q V + Sbjct: 181 DDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + ++A+ +G +V++ +++A A G + ++ ++ + + + +++P Sbjct: 241 IGLVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPD 300 Query: 301 A-LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM-------- 351 A A + A ++ ++ Y ++ + + R +EM Sbjct: 301 ADELKVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAK 360 Query: 352 -------TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP 404 R A ++ + V PT PQ Sbjct: 361 LGSVDESLEDRVYALESAERSERNDLLNRMAQLEQRGPVAAPTMYGANAFVPPQGGYANS 420 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + V + Q T + P N + P + Sbjct: 421 FVSVDTTVTTQDAPMSSTQNTTIDAVPPSSGMGMTPPPMNGVGMTPPPMGAPGSTPPPMN 480 Query: 465 ALEKAPAKKEAYRWKAT-----TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + AP T + A +A K E Sbjct: 481 GVGMAPPPMGGVGMAPPPNNGDTDSRKPTRNQAKGRAKKGVSTQAIISEQILSAQEYRNV 540 Query: 520 RDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQR--HLNNRGAQQKLAEALS 577 + + + + + + +++ + N + A+A + Sbjct: 541 QSNVIKYLKDSNRNMTSTVIGQGQLVYVDQSKAVMAFKNTLHLNVMTNEVNLAEAADAFT 600 Query: 578 MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ 625 G V + I D V + ++ +A + + Sbjct: 601 YTLGYAVHVEI-VDALTQVYKDYKKAAGSTTQRQVKASQRPQE-PMVD 646 >UniRef50_A1V9U7 DNA polymerase III, subunits gamma and tau n=5 Tax=Desulfovibrionales RepID=A1V9U7_DESVV Length = 622 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 171/645 (26%), Positives = 266/645 (41%), Gaps = 48/645 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS+ L ++RPQTFA+V GQE V L+ R+ AYLFSGTRGVGKT+IAR+ AK Sbjct: 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC T T PC C+ CR++ QG VD++EID AS ++D + L + + YAP GR+ Sbjct: 61 ALNCATAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +L E + ++P A++L+AR A GS+RD++SL Q +A G+ +++ + Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L L+EA+ + V ++ E RG++ L E++ + M++ + Sbjct: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + A+ P I +Q L G++ + + + Sbjct: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEP------------ 348 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M L + + P + P+ S T + Sbjct: 349 ----AMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGCAATIPTPGTQG 404 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 A + A P + R P P+ + Sbjct: 405 TQGTAPAAGMTPSTAAPATPSDAPSPRVPWDEAPPTPPRSGIPPRPAPRMPEASPATG-- 462 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLV 536 +T + + H + A + D + + + Sbjct: 463 -----------RPASTSSSAGASPSHSDASDTAEHTPSGPRTWDGFLEFCQGRNGQGGRL 511 Query: 537 EQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 V A E D + L SS L + Q LA + G + + Sbjct: 512 ATVLRQATPEHGDGVLRLATMSSVQYERLTDAATQTTLAGLVRDYFGDACRVKVH----- 566 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEES 639 P + E +A A +Q L+ A + + + Sbjct: 567 ----PPTRVRRTEAELRKEA----EAHPAVQLLKEEMGACILKCT 603 >UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propionibacterium acnes RepID=Q6ABA1_PROAC Length = 957 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 162/644 (25%), Positives = 263/644 (40%), Gaps = 27/644 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +V+G++HV+ L + R++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 108 LALYRRYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALN 167 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +CR++ G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 168 CEQGPTPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVHSRYK 227 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + + + Sbjct: 228 IYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPK 287 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + L + +E I + L L+ RA GS+RD+LS+ DQ + + DG VS + +A+ Sbjct: 288 VLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAADGHVSYEQAAAL 347 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +V+A + +V A I++ G + ++L + + +V P Sbjct: 348 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLVIVSAVPD 407 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L + R+ ++ + L G + R+ +E+ R Sbjct: 408 ACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAPRLHLELMCSRI 467 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-LPETTSQVLAA 415 L + + + Q P+ S Sbjct: 468 LLPGADTDGRGIHARLERLERRIGVSGPVEEVERAERPVTAQPPTRYADTPQQASPPQHW 527 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + A + A + RP R A PS + Sbjct: 528 PAENLQNPERRSAPEHHDAPSPGQRPSGRPRPSRKDYRPGNQLAEQPPSNQHGDDGQMSQ 587 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI------------ERDPW 523 + P Q++ + + TP + + R W Sbjct: 588 GPRQQGGPSTSQRQQPRPQDHQPSQRDRQDTPPAQPQQPSAEQGGRADDAINITTLRREW 647 Query: 524 AAQVSQLSLPKLVEQVALN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSM 578 + + V + LN E N L + ++ + + L +A+ Sbjct: 648 PQVLEAVKDGGRVAWMVLNQYAQVLEVHGNQATLGFSNIGARENFAAGNYPKVLHDAVVK 707 Query: 579 LKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 + G + T V + PA P A+E D Sbjct: 708 VLGVDLAFTAVVGEPPAAVRPESHPAEFQSGP--AAQEPPDDDP 749 >UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 Tax=Desulfuromonadales RepID=Q39Q40_GEOMG Length = 582 Score = 362 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 180/559 (32%), Positives = 275/559 (49%), Gaps = 8/559 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQTF+D+ GQEHV L N + GRI HA+LF+G RGVGKTS AR+LAK Sbjct: 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G++ PC VC C EI G VD++EID AS T V+D R+L +NV+Y P+R R+ Sbjct: 61 ALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ +L HI+++E IA +L ++AR +GS+RD+LS+ DQ +A QV + V ++ Sbjct: 181 GKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L A+ + V+ ++ G E++ L + +++ Sbjct: 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGD 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + A +R+ A ++P D+Q + LL EL + R+ +EM L++ Sbjct: 301 GTDLLDLSEAELATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMAT 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVP-LPETTSQVLAARQ 417 P +P+ + + V AP +PT PE T+ R Sbjct: 361 LAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ + A + E A + ++ + R + +P A R Sbjct: 421 AERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGAKPRLGSMLEQGSPLVVSADR 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL-----AAEAIERDPWAAQVSQLSL 532 + P + AL+ A+ + + + + Sbjct: 481 LEIGFPEGAFALASLRDSDSQAALKELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRV 540 Query: 533 PKLVEQVALNAWKEESDNA 551 K +Q L Sbjct: 541 EKEQQQTVLKQAATSHPAV 559 Score = 65.4 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 11/193 (5%) Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAI- 518 + P A P P + A AK +E Sbjct: 386 ADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRR 445 Query: 519 ERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVCLHLRSSQ---RHLNNRGAQQKLA 573 D WA V+ + P+L + + S + + + L + +Q L Sbjct: 446 TGDSWADFVALVKGAKPRLGSMLEQGSPLVVSADRLEIGFPEGAFALASLRDSDSQAALK 505 Query: 574 EALSMLKGSTVELTIVEDDNPAVRTPL---EWRQAIYEEKLAQARESIIADNNIQTLRRF 630 E + L + A P E ++ E++ +++ + + Sbjct: 506 ELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRVEKEQQQTVLKQAATSHPAVADALDV 565 Query: 631 FDAELDEESIRPI 643 F L E + P+ Sbjct: 566 FGGTLAE--VEPL 576 >UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY35_DICNV Length = 665 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 226/660 (34%), Positives = 334/660 (50%), Gaps = 27/660 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+TF ++VGQ+H+ AL+ L R+HHAYLF+GTRGVGKTS+AR+ AK L Sbjct: 2 YQVLARKWRPKTFRELVGQQHITQALSYALDHDRLHHAYLFTGTRGVGKTSLARIYAKSL 61 Query: 63 NCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G +A PCG C++C EI+QGRF DLIE+DAASR +++T++LLDN+ YAP +GR+K Sbjct: 62 NCLINGTSAQPCGQCEHCLEIDQGRFPDLIEVDAASRRGIDETKELLDNLPYAPVKGRYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM +R SFNALLKTLEEPP HVKF+LATTD QK+P T+LSRCLQFHLK ++ E Sbjct: 122 VYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPTTVLSRCLQFHLKNINPE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+R L HIL E I +E AL LLA+AA GS+RD LS DQAIA G G V T V+ +L Sbjct: 182 QLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFLDQAIAYGQGVVKTDDVAYLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + Q L+ + E++ V A++ E A ++ +L + L +I + QL Sbjct: 242 GAVPTAQIYRLLTKIAESDARAVRAILTELDAFSPDYMDVLRHVFQGLQQITVAQLQAQQ 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 N I+ + LA+ +P +QL+YQ + + +PY PD R+ +EMT LR +A P Sbjct: 302 NPN---EIDQTLVRLAQQLPVELVQLWYQIISDAWQSMPYQPDMRVALEMTFLRMIALQP 358 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P P + + +AP ++ +P+ L + Sbjct: 359 LLPETTISEKHIIPEPDNDVDLPPWRDDESEMNTAPLESSENDVPDNNDVDLPPWHDDES 418 Query: 422 VQGATKAKKSEPAAAT-----RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 T + A P + LE + + VP+ + Sbjct: 419 EMINTAPAEPLENDAPDNNGVDLPPWRDDELEMMNTAPAEASENDVPNDNDADMPPWRDD 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER--------------DP 522 + + P L EL Sbjct: 479 ELEMINTAPLESSENDVPDNNDVDLPPWHNDELEMNTVPLKSSENKSVIQLEQAVNQLQL 538 Query: 523 WAAQVSQLSLPKL-VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLK 580 W+ ++ L + + ++ + + ++++ L + S+ N L LS Sbjct: 539 WSQFLNTLPVEDVFLQSLVEQSIPVSFQNDSLQLAVLSAAASWVNEQRLADLTRILSASC 598 Query: 581 GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + ++I DD + T RQ ++ A++ ++ + ++TL F ++ +SI Sbjct: 599 ARKIAVSITFDD--TIATSAMLRQQESDQMHQMAKQKLLQNPVVRTLMTDFHGKIMRDSI 656 >UniRef50_B3ERB2 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERB2_AMOA5 Length = 629 Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats. Identities = 163/634 (25%), Positives = 276/634 (43%), Gaps = 15/634 (2%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 ARK+RP F+ V+GQ H+ T L N + + HA+LF G RGVGKT+ AR+LAK +NC+ Sbjct: 8 ARKYRPSVFSHVLGQAHITTTLKNAIRTNHLAHAFLFCGPRGVGKTTCARILAKAINCQQ 67 Query: 67 GITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PC CD+C+ Q ++ E+DAAS VED R L+D V+Y P G +K+Y+I Sbjct: 68 LTADIEPCNACDSCKSFNQRTSFNIYELDAASNNSVEDVRSLVDQVRYPPQNGAYKIYII 127 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + + E I Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKVLPTILSRCQIFDFQRIKPEDIVQ 187 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 QL+++ +EHI ++ AL L++ A+G+LRDALS+ D ++ G G+++ +A L LD Sbjct: 188 QLKNVSEQEHIPYDEEALHLISLKADGALRDALSMFDVIVSFGAGKLTYEATLENLHILD 247 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-ALGN 304 L EA+++ + + + + +E G + L ++ + + Q L Sbjct: 248 YSCYFKLTEAILQNDIKACLLIYDEIIQSGFDGLYFLEGLVAHFRSLLVAQDPQTLPLLE 307 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 +I+ R A+ P + Q + + ++R VE+ L+ + Sbjct: 308 VAPSIQERYGMQAQQASPGFLLDALQLANQCALQYKESLNKRFHVELALIELASKMSTGH 367 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 + +P V+ + ++ + + V E T Q Sbjct: 368 PKDSVLPNPGVTTVSNNPTIPIVSASKPTNASDRPSAAVNKTEATVVKDNKEADKVIEQV 427 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 + K+ + A++ +++ A P+ ++K + + Sbjct: 428 QEELPKTAVSVASKYDRKEEEITQQIKEERPNPAAGLAPNIVKKGVLQSTIKIPQ----- 482 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV-ALNA 543 + + T A+ + I W A QL L + + LN Sbjct: 483 -LSHIKANIDQPKVVETVNTTTVMEASVEFTKEIVLVHWQAYTQQLKLAERMPAYNLLNQ 541 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 E +N + + ++ +++L L D AV TP + Sbjct: 542 PIELENNTITIKFTNTVEERILADIKEELVNYLRNNLKHP------AIDVKAVFTPTQSG 595 Query: 604 QAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + R + ++QTL+ E+ + Sbjct: 596 PQRPYTAQERFRYLANKNPHLQTLKEQLQLEVVD 629 >UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 Tax=Sphingobacteriales RepID=C6W6R9_DYAFD Length = 621 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 155/635 (24%), Positives = 258/635 (40%), Gaps = 27/635 (4%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 ARK+RP TF VVGQ H+ T L N + + A+LF G RGVGKT+ AR+LAK +NC+ Sbjct: 8 ARKYRPVTFDSVVGQSHITTTLKNAIRTNHLAQAFLFCGPRGVGKTTCARILAKTINCQN 67 Query: 67 -GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 G CG C++C + ++ E+DAAS VED R+L+D V+Y P G++K+Y+I Sbjct: 68 LGDDVEACGECESCVSFQNNASFNIHELDAASNNSVEDIRNLIDQVRYPPQTGKYKIYII 127 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + + I H Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQSKDIAH 187 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLGTL 244 L I +E I E AL+L+ + A+G LRDALS+ D + + ++ AV L L Sbjct: 188 HLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFSTNNHLTYAAVLENLHIL 247 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-ALG 303 D D + +A+ + R + L +E +G + +V +L + + + L Sbjct: 248 DYDYYFKITDALTAGSIARSLVLFDEILRKGFDGHLFVVGLLEHFRNLLVCKDPATVTLL 307 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + E + E + + + A ++R+ VE+ L++ + Sbjct: 308 QVSESAERKYLEQSLMADMSFLLSALSITGQCDINYKSAKNQRLHVELCLMKLANLPQVL 367 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 L ++ V + P APQ + V + A Q Sbjct: 368 QLHSLAAVDETAKKK----VEPQQSLNNGPAPAPQPSAVVNGQPSNGSAYAQAPAPQPAM 423 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 + + T + V + + + + + P+ + A P Sbjct: 424 PQHPSPQQAMHQQTAPQQVMPQQTAPQQVTPQQPASSRLKNTISLTPSLTPPTQQAAKEP 483 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK--LVEQVAL 541 Q + A + + W + EQ+ L Sbjct: 484 AAQPRVEYAAVPNGT-----------KKEELTLPNLQRLWYEFSQKRQQAGNSTTEQITL 532 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 N + + + + L + + + L L + +L I R + Sbjct: 533 NREFQLNGTTIEIALDNDHQQDAVMNMRYDLLGFLKSRLDAP-KLDI------NPRVAPQ 585 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + + L++ ++D Sbjct: 586 EVNRLPYTPAEKFNYMAEKNPYLLELKQALGLDVD 620 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 212/381 (55%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFAPVAPTAV 383 + + Sbjct: 362 YDMMSLLARVEQIEDKLEKGQ 382 >UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=B0VRL4_ACIBS Length = 682 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 233/687 (33%), Positives = 323/687 (47%), Gaps = 53/687 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL++ L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E IA + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + E+V L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +L++ I D+QLYYQ GR +L A + G EM +LR LAF P Sbjct: 302 LKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT------------- 409 P A + + Q + P + + Sbjct: 362 APNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPE 421 Query: 410 --------------------SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALER 449 + + + + V E Sbjct: 422 PQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEP 481 Query: 450 LASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPEL 509 ++ + A Q + + E T Sbjct: 482 ASTAEPIGLFEASNAEFSLAQDTSAYDLVSEPVIEKQSLVQAEIVETVAVVKEPNATDNS 541 Query: 510 AAKLA----------AEAIERDPWAAQVSQLSLPKLVEQVALNAWKEES-DNAVCLHLRS 558 + W L V+++A + H+ Sbjct: 542 QLMPQDILKLPSQTLEGEWTLEKWEFWFRNSQLSPAVQELAQHGVMTGEIGGNTVFHIPQ 601 Query: 559 SQRHLNNRGAQQKLAEALSMLKGSTV---ELTIVEDDNPAVRTPLEWRQAIYEEKLAQAR 615 ++ +L +AL + T+ TP + E+ +A Sbjct: 602 EYENMLT-----QLQQALIEALKQQWPNTQFTVEYGAV-NTATPYVMQSVRKEKAFHRAT 655 Query: 616 ESIIADNNIQTLRRFFDAELDEESIRP 642 E + I++L FD EL ++P Sbjct: 656 ELLQQQPVIKSLIETFDGELQNIQLKP 682 >UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 Tax=Bacteria RepID=D2QBB5_9SPHI Length = 664 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 164/669 (24%), Positives = 264/669 (39%), Gaps = 42/669 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQEH+ T L N + + A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQEHITTTLKNAIKTNHLASAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C++C Q ++ E+DAAS VED R+L+D V+Y P G++ Sbjct: 63 INCQNLTAEGEACDACESCVSFNQNASFNIHELDAASNNSVEDIRNLIDQVRYPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + Sbjct: 123 KIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQIFDFNRIQP 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVSTQAVSA 239 + I + L I +E I E AL L+A+ A+G LRDALS+ D + D + + V Sbjct: 183 QHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAADRIIRYKEVLD 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D L + ++ + + ++E +G + +V + + + + + Sbjct: 243 NLHILDYDYYFKLTDLLLAGKLPQSLLTVDEILRKGFDGHQFIVGLCRHFRDLLVCKDAA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG---------- 348 L + + + A P + + A D+R+ Sbjct: 303 TVQLLQVTENVRKQYLDQAMRAPMSFLLSALSLGGQCDMSYKQAKDQRLHTELWLMKLAN 362 Query: 349 VEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + L +P + P + P Q + AP V Sbjct: 363 LRNLLNWDAMPELPLPQNGAHSTERFTTPESGDEKKNGEHQPSQSRQAPTSPQLVESHPI 422 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRA------------------RPVNNAALERL 450 TS+ + Q A++ + + A A+ AL Sbjct: 423 TSEPVNGYQPANGAAAASQPRSNGYAVASAGTLASSPSVAPSSAGTASVTTPTRPALVAD 482 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A +T + A + + P + P Sbjct: 483 AVMTQPETTGRPEVRPKPVIAPPQRPATSRLRSTVPLTTGPVQPATEAVSDVISTAPTRP 542 Query: 511 AKLAAEAIERDPWAAQ--VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGA 568 K +D W A + Q EQ+ LN + + + L ++ + Sbjct: 543 DKAFTFEDLQDVWRAFSKIRQQQNDSASEQLILNREIVLNGTTIHITLDNTLQVGYLTEV 602 Query: 569 QQKLAEALSMLKGS-TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + +L L + ++L T E ++ IY + + + L Sbjct: 603 KPELLGYLRAELQNSQIQLEHTV-------TVQEVKKMIYSS-QDKYNYLAEKNPALHEL 654 Query: 628 RRFFDAELD 636 R+ + E+D Sbjct: 655 RKVLNLEVD 663 >UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfovibrio RepID=B8DQU3_DESVM Length = 688 Score = 358 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 178/697 (25%), Positives = 273/697 (39%), Gaps = 69/697 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RPQTFA+V GQE V L+ + R+ AYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSNAPLTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE T PC C+ CR++ G VD++EID AS +ED R L + + YAP GR+ Sbjct: 61 ALNCEKAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R +FNALLKTLEEPP V F+LATT+P K PVTI+SRC F K L Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E +P A++L+AR A GS+RD++SL Q +A G +++ + + Sbjct: 181 NELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +++A+ + V A++ + +G++ L E+ + M++ + Sbjct: 241 LGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGE 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + E A T I +Q L G++ + + + M +E+ LL Sbjct: 301 AALPALDLPEEEARQWLEWAPKFEITHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + L + + V P + Sbjct: 361 MLPRLVSLEQLSRGGGAGPAGGRGMPGGVGGVGGGPAGGSGMPGGGAGGHGSMPPRQGGY 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP------- 470 Q + + + ++ A Q RP ++ + Sbjct: 421 GGYGAQSGQSGQPGQFGQSGQSGESFPQAQPPQGRYPGPGQVRPQAASSASSMSSSSGVP 480 Query: 471 --------------------------------------AKKEAYRWKATTPVMQQKEVVA 492 A A Sbjct: 481 GAPGMQPAGGFPRPERAAPAAAPAPSRGGSDTSLPWDDVPYPAPGGAAFGDAAIGGTSSV 540 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS----QLSLPKLVEQVALNAWKEES 548 A + L A A E W V + + A + Sbjct: 541 PGAPDSVASASDTPDTLGAPDAPAPHEDGTWVGFVQYCVERNGEGGSSLSMLRQAQGHCA 600 Query: 549 DNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 D + + RSS L+ G + L G+ V + + ++TP E R Sbjct: 601 DGRLTVSTRSSTLYNQLSVPGNEALLVARARAYFGTDVRVEV-LPPTTRIKTPSELRAEA 659 Query: 607 YEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + LR F A + S RP+ Sbjct: 660 ------------ERHPAVSLLREQFGATML--SCRPL 682 >UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=root RepID=Q2LYB8_SYNAS Length = 588 Score = 357 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 161/558 (28%), Positives = 251/558 (44%), Gaps = 14/558 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLARKWRPQ F DVVGQ+HV+ L N + RI HA+LFSG RGVGKTSIAR+LAK Sbjct: 1 MDYLVLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G TPC VC NCREI +G +D+ EID AS +++ R+L + +++ P R+ Sbjct: 61 AINCEQGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+R +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F + L + Sbjct: 121 KVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL I E I L +A A +GS+RD+ S+ DQ I+ + +AV + Sbjct: 181 RQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAVEEL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG D L EA++ + + + ++ E G++ +L + +V++ Sbjct: 241 LGRTDRRFLFQLSEAVLRRDAGQCLRIVEEGYYAGLDMTYFYTLLLHHFRNLLLVKIVGP 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + + + +Q LL + + + R+ +E + R Sbjct: 301 QQELLDLPGNDLSGIEAQVAEVSRETLQQLLDILLAEEESARRSHNPRLHLEAIVCRMAG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P +P+ E + + + A +P+ P TT + Sbjct: 361 LPPALPIEEILSRMEDLETRL---ASSAPCLSETVPGAASFSPSKPGNSTTVRERPLTLP 417 Query: 419 LQRVQGATKAKKSEPAAATRARPVNN---------AALERLASVTDRVQARPVPSALEKA 469 + R + + + P + A +++ + + + E Sbjct: 418 IVRTEDRSVREPMAELQGAVRDPAHAGGDVWADFKAHVKKHSILLASKIEQGECLGCENG 477 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 + + + + E + L + + E+ R Sbjct: 478 HLRIGFRKGSVFFEDLNEPEQKSRLSELAGSFFKTAVTVDIEPVETESDGRGSGGRLSEA 537 Query: 530 LSLPKLVEQVALNAWKEE 547 ++ E++ A Sbjct: 538 MARKNQAEELRREALNHP 555 >UniRef50_A7NLI5 DNA polymerase III, subunits gamma and tau n=2 Tax=Roseiflexus RepID=A7NLI5_ROSCS Length = 644 Score = 357 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 188/647 (29%), Positives = 292/647 (45%), Gaps = 21/647 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L R++R QTF +++GQEHV+ L N ++ GR+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MTVQALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCGVC++CR I +GR VD+IE+DAAS T VED R++++ VQ+ PA R Sbjct: 61 AVNCTAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAVART 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+ K+P TILSRC +F V Sbjct: 121 KVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I +E + EP A + +ARAA GS+RDALS+ DQ +A G G VS + V + Sbjct: 181 ASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAYGGGTVSLEQVRNL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + +LV+A++ A+ + ++ + AA G + +++ L + ++ Sbjct: 241 LGASEMQEVTTLVDALIAADLPGALRVVADVAAAGADLRQFTRDLVERLRALMLICAGAD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +L + ++ ART+ D+ + + +L + ++ +E+ ++ A+ Sbjct: 301 RSLLDVAEEEAAQIERQARTVSLGDLMRWVKLFSELDYQLRISSYGQLPLELAVIEAVIA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + P + QPQ AP Q T P + T + Sbjct: 361 SAPAATAAQSTVPATPPRPSARPTTAPARDAAQPQRAPAQPTTAPAHDRTPPQPPPARAA 420 Query: 420 QRVQGATKA---KKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 P A+ T + A Sbjct: 421 PAHNAEPPQRDLAPPATVPVRDDMPPVPTIRRAGATGTAAASPVDAAREAPGDAPQASAR 480 Query: 477 RWKATTPVMQQKEVVATPK--ALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + +T + + E A A W+A V + + Sbjct: 481 QPDSTGDPFIRHQEQTRRASNPGISTESGEGVAAANADAVALERIEGIWSAVVRDVRVHN 540 Query: 535 LVEQVALNA---WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 Q LN+ + DN + L + S + +Q + E LS G+ + Sbjct: 541 KTLQALLNSGARPVDVKDNILVLEVPSEWLMNQIEKPAMRQIVEEVLSKHMGARFAIRCA 600 Query: 590 EDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + P R+ I + D ++ FDA++ Sbjct: 601 V-ETQRRENPGALREQIRASR---------KDPLVRAALNIFDADII 637 >UniRef50_C4XU00 DNA polymerase III gamma and tau subunit n=2 Tax=Desulfovibrio RepID=C4XU00_DESMR Length = 654 Score = 357 bits (915), Expect = 7e-97, Method: Composition-based stats. Identities = 179/664 (26%), Positives = 275/664 (41%), Gaps = 41/664 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L K+RPQ FADV GQ+ V L+ + RI AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSTISLTAKYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET T PC VC CR+I G D+IEIDAA+ KV+D R L ++V YAP R+ Sbjct: 61 ALNCETAPTGEPCNVCSQCRQITAGVSPDVIEIDAATHGKVDDARRLKEDVGYAPLNSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+ +FNALLKTLEEPP V F+LATT+P K P TI+SRC + K L Sbjct: 121 KVFIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L E + +E +A+ L+AR GS+RD++SL Q +A G +++ + Sbjct: 181 SELEAHLSSVLMREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELTEADARGV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L+EA+ +G V+ L+ + +G++ L E+ + + +++ + Sbjct: 241 LGLAGQEVFFGLIEAIRAEDGPAVVELLRQVLDKGLDIGFFLRELASMWRNLFLLRQAGE 300 Query: 301 ALGND---MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD------------- 344 A A I I +Q L G++ + + + Sbjct: 301 RALPVVDLPAEEAGEWLVWAGRIEAAHIHACWQMTLEGQRRVQTSLEPALALELLLLNMA 360 Query: 345 --RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP---QPQSAPQQ 399 R+ L A P +S P P +PQ Q Sbjct: 361 YLPRLLPLQNLASCAAPAASGPGGSGGSSGRSGGQGGGLTPRQPQGGRPGGYRPQPLADQ 420 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 PET ++ AA P + R + T + Sbjct: 421 VAPYGQPETGPGRDQGGYGRPAAGLDAAPPTAQSAAPRSYPPQAAPPVSRSEAPTPHAAS 480 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 P + A A A P A+ A + ++ A Sbjct: 481 GPGNGSTPPAQAPAAAPAAGGYAPSGSG--QSASFAASGQGHGSSGHDDVPRPPQAAPAG 538 Query: 520 RDPWAAQVSQLSLPKLVEQVALNA---WKEESDNAVCLHLRSSQR--HLNNRGAQQKLAE 574 W + Q + + + + + + ++ L + ++L E Sbjct: 539 PRTWDGFLRQAGRGSDMVALKHAQGTFSPDPAPGELVVSCTNAFHRGRLAHPDKLRQLTE 598 Query: 575 ALSMLKGSTVELTIVEDDNPA-VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDA 633 A G V + + E + +P + R + + ++ FDA Sbjct: 599 AAEAYFGPGVTVRLTEGEAANDRMSPHDLR------------DYVDNHPEVRQAVTAFDA 646 Query: 634 ELDE 637 E+ E Sbjct: 647 EIIE 650 >UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKH0_FIBSS Length = 575 Score = 357 bits (915), Expect = 9e-97, Method: Composition-based stats. Identities = 175/576 (30%), Positives = 283/576 (49%), Gaps = 3/576 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +ARKWRPQ+F+D+VGQEH+ L N + GR+HHA+LF+GTRGVGKT+ AR+LA+ Sbjct: 1 MAYIAMARKWRPQSFSDMVGQEHIAKTLENAIQGGRLHHAFLFTGTRGVGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG CD+C++I G +D+ EIDAAS T V++ RD+++ VQY P G++ Sbjct: 61 TLNCKGSDPLHPCGECDSCKDIAGGNPMDVYEIDAASNTSVDNIRDVIERVQYPPVIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS +FNALLKTLEEPP HV F+ ATT+ K+P TILSR +F K L V Sbjct: 121 KIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQRFDFKRLTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QIR +L +I +E I AL + A A+GS+RD L+ DQA A +++ ++V ++ Sbjct: 181 DQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFTGNEMTAESVRSV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQLS 298 LG + SL++++ + + ++++A GIE+ LL L + + Sbjct: 241 LGIPPVELFFSLIQSIENHDIKGCFRMVDDAVKIGIEFIPLLDGFGKFLRNLLYARLDAF 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 N + + + A+++ DI + L+ + L Y+ + R+ VE T R Sbjct: 301 TPDALNITEELYTKYKSCAQSLTNGDILRISKMLIDLQGTLRYSTNPRLLVETTFARMAW 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L + AV A ++ Q Sbjct: 361 LDRLVDLRKALAAINDPKSAENDAVKKKVTEVSAMIDAQEEVQASYDDPFAGYDQGGVQA 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 R + + A V +AA+ T + P P AL A + + A W Sbjct: 421 FSRYEISAAWPSILSNIANDGDYVFSAAIAGTTLETGDPEQNPFPIALTYAGSTENAENW 480 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + V + L+ L+ + + + E+ + AA++S L L ++ Sbjct: 481 GYRQMTEHPEYVERVTRILEDRLQTKIALSIRTRAFTESELAEQRAAKMSPYELD-LEKE 539 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAE 574 L+ ++ + + + L + ++ Sbjct: 540 PGLSKLQQMFATELVFTKKLKKAALVAQTDEEDCEA 575 >UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 Tax=Pseudomonadaceae RepID=Q48KQ6_PSE14 Length = 737 Score = 356 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 247/539 (45%), Positives = 315/539 (58%), Gaps = 2/539 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F ++VGQ HVL AL N L R+HHAYLF+GTRGVGKT+IAR++AK Sbjct: 1 MSYQVLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+TPCG C C+EI++GRFVDLIEIDAASRTKVEDTR+LLDNVQYAP+RGRF Sbjct: 61 CLNCETGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP +VKF+LATTDPQKLP TILSRCLQF LK + Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L H+L E++ E AL LL RAA+GS+RDA+SLTDQAIA G+G+V V AM Sbjct: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ A++E + V+ + A +G +W +L E+L +LHR+A+ Q P Sbjct: 241 LGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N R+ LA+ +P D+Q YYQ LIGR++LP APD R G EM LLR LAF Sbjct: 301 GVDNGHGDR-DRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P + T P ++ A + Sbjct: 360 PADNYDAPRQPLKPVGISQATVDSRKAVADATPVASVAPAVSTAPVMAAPDPAFEALPPA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T A ++EPAA ++P + PV ++ Sbjct: 420 AAPMPTAAVRAEPAAQPESQPQAQPEPVEEVDLPWNEPKSPVAEKNAESAPDTGTVAEPV 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTP-ELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 PV++ + P A+ A E+ A + + + Sbjct: 480 AEPVLETVSEQPDLTPMPTPAPASPVPDAPEAEPAQPVAEQQVTPAMLEAIPDSAYLSM 538 >UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGG2_9ACTN Length = 862 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 170/598 (28%), Positives = 259/598 (43%), Gaps = 10/598 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RPQTF DVVGQ H+ + N L R+ HAYLF G RG GKT++ARLLAK L Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALL 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 CE G T P G C+ C I +G D+ E+DAASRT VE+ R+ ++ VQ+AP RGR+K+ Sbjct: 63 CEKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRGRYKI 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDP K+P TI SRC +F L E+ Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L + E + E AL+L A+ A+G +RDAL+ +Q IA G+G+V+ Q +LG Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD + +V + + + E G + ++ + + L+ AL Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTDGAL 302 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +A ++ A P + L EL + + R+ E+ L R Sbjct: 303 EPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARPESD 362 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + L + + ++ + +V + A + Sbjct: 363 LTLASLAARVEELERACAQGARPVDAPAVRVAASMFDSTSVADVPMAASAAADAPSASGL 422 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + A V AS S + + ++ Sbjct: 423 SPSVIAAARAIKGGGAPSSVPVVDTGAPASAASDASGSDASSGAAAVASAERIPAVQSGL 482 Query: 483 P--VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-LPKLVEQV 539 + + + E + + AKL+ A + W A V+++ L + Sbjct: 483 DSSPAPAADSPSASEPKLAFSSAEPSEAVRAKLSNPAALQRGWQAAVAEVKNLRTAYGAL 542 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNN------RGAQQKLAEALSMLKGSTVELTIVED 591 L+A A L + S + + ++ AL+ G V + Sbjct: 543 LLSASVSPVQGASGLAVEFSHENSFAFSAVQKPEVSEMVSAALAHAFGGEVPFEFTQG 600 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 355 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 212/381 (55%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP++F +VVGQEH++ L N + L +I HAYLF+GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I +D++EIDAAS V D R+L ++V YAP++ ++KV Sbjct: 62 NCLNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+P KLP TILSRC +F K + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I N+ I E + L+ +A GS+RDA+SL +Q + +G ++ + V MLG Sbjct: 182 IAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D+ SL++ M + + +++ + GI+ L + +L + + + L Sbjct: 242 VANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEEL 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++E + + + +KE+ YA +E+T+LR + Sbjct: 302 KEILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEIS 361 Query: 363 MPLPEPEVPRQSFAPVAPTAV 383 + + Sbjct: 362 YDMMSLLARVEQIEDKLEKGQ 382 >UniRef50_D1VUH2 DNA polymerase III, gamma and tau subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUH2_9FIRM Length = 577 Score = 355 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 146/599 (24%), Positives = 257/599 (42%), Gaps = 41/599 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RK+RP F ++GQE ++ +L N + + HAYLFSGTRG GKTS A++ A+ + Sbjct: 2 YKALYRKYRPLDFNQMIGQEALVMSLKNQIKNNEVSHAYLFSGTRGTGKTSAAKIFARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE I PC C +C I VD++E+DAAS V+D RDL D V Y P ++KV Sbjct: 62 NCEHPIDGNPCNKCKSCLSILNNTSVDVVEMDAASNNGVDDIRDLKDKVIYPPTFLKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLK LEEPP H+ F+LATT+ +K+P TILSR +F + +E Sbjct: 122 YIIDEVHMLSKGAFNALLKILEEPPSHLIFILATTEKEKIPATILSRTQKFEFSRVSLEN 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I E + QL+A+ ++G++RDALS+ DQ ++ +S + +LG Sbjct: 182 IIKRLKYISQMEGKTLDDEVYQLIAKTSDGAMRDALSVLDQLLSFDSDHISIEKAMDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L A + + R +++I++ A +G ++ +L ++L + + +V+ Sbjct: 242 ISSSESLFELTSAYLNKDAARAISVIDDIAIQGKDFLSLNNQLLKHMRDLMLVRTLKNPE 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + +E A T +I L + L YA + R+ +EMT ++ Sbjct: 302 NLVYSTYLKDFKEQAATCDLDNILDIIDELKDLQVNLKYAENPRILLEMTSIKICNKKNF 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 L + S + L + + + Sbjct: 362 KSLQLNLDNLSKRVEKLEF-----LGSLTKESSNNKNIYRQSLEKPNENDIINLNSDMKS 416 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + K S+ + N+ + + Sbjct: 417 ENEVLEKSSQSDPLSVKTEENSD--------------------------------YNRSI 444 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 +++ + + + L +TPE + + + + + ++ LV + Sbjct: 445 DEDKKEYHKNSLENIDDQLVDNETPEKSLGINDIKKDWNEILNDLKAVNQVPLVGLLNDA 504 Query: 543 AWKEESDNAVCLHLRSSQR----HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + + + N + + L G +++ I D+ ++ Sbjct: 505 KPLSFENGTLNICYGPGHEFHLKSTNEPKRLEIIKSVLKKRYGMDIDVKISIADDTTLK 563 >UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPF5_9PLAN Length = 618 Score = 355 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 179/647 (27%), Positives = 289/647 (44%), Gaps = 59/647 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ+F ++VGQ V AL N + GR+ HAYLF+G RGVGKTS AR+LAK L Sbjct: 18 YVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKAL 77 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ G +ATPC CD CR + G VD++EID AS +E+ R L NV P+R RFK+ Sbjct: 78 NCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIRPSRARFKI 137 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHM ++ +FNALLKTLEEPPEHVKF+ TTDP+K+P+T+LSRC +F + +++ Sbjct: 138 YIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDE 197 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I+ E + EP AL+LLAR A GS+RD+ SL +Q +A G +++ V+ MLG Sbjct: 198 IVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVNQMLG 257 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +Q ++ A+ + V+A ++A RGI+ L+ ++LG + + + Sbjct: 258 AAGSEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMMTLAVGAGPT 317 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ +A++ ++ Q L + + R+ EM L+R Sbjct: 318 LLQTVLPTDAEKIEAVAKSYGLANVMAAVQILDDALVRMQRSAHARILAEMALVRVCQLE 377 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + +S P+ + P + P +T Q A ++ + Sbjct: 378 DLQSVADLVETIRSGKPLPARPAIQIAAAPQPSAAPQLPPQAAPQAMSTVQTDVAAERTE 437 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ S P V + E + Sbjct: 438 SRVNSSDPASSGPVRQASPSEVTSYVEEPDPELGLSE----------------------- 474 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P ++ ++ W ++ +S Sbjct: 475 -------------------------PPRTNGIKLTDSTAKNIWEGILTDMSDLVGEYARP 509 Query: 541 LNAWKEESDNAVCLHLRSSQRH----LNNRGAQQKLAEALSMLKGSTVELTIVE-DDNPA 595 N + + ++ L A+ +L L+ G+ V L +D PA Sbjct: 510 YKTVATSGPNRLVVSFSAAYNSQVEFLRRPAAKTRLEGMLTEAVGNPVTLEFKVLNDVPA 569 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +T + Q + + +Q F AE+ S+R Sbjct: 570 AKT--QEPPKRSAPSSGQMIRKVQQNQLVQQAIEMFGAEV--TSVRA 612 >UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunits n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017455DA Length = 676 Score = 354 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 169/668 (25%), Positives = 270/668 (40%), Gaps = 40/668 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV ARK+RP+TF DV+GQ+HV+ L N ++ R+ HAYLF G RG GKTS AR+ AK Sbjct: 16 SYQVFARKYRPRTFEDVLGQDHVVRTLRNAIAQNRLAHAYLFVGPRGTGKTSTARIFAKA 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G + C EIE+G +D+ EID AS VE R+L + V++AP R R+K Sbjct: 76 LNCPNGPRVDFDPDDEVCVEIEKGISLDVREIDGASNNGVEQVRELREEVKFAPTRCRYK 135 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y IDEVHMLS +FNALLKTLEEPPEHVKF+ ATT+ K+ TI+SRC +F L+ + Sbjct: 136 IYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISRCQRFDLRRIPAG 195 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I L HI E +A +A +A+ AEG +RDA S+ DQ +A ++ Q V + Sbjct: 196 LIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSMLDQLVAFCGERIEEQDVLDIF 255 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-A 300 G + +L +++ + + ++ A G + LL +++ + + Q+ P A Sbjct: 256 GFTRGETVANLAARVLDRDTVGALKELHSQADTGKDLGRLLTDLIQHFRTLLVHQVDPAA 315 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + +R+ + + + L + +A ++ + +E+ +++A+ Sbjct: 316 AEEDLSPEVADMVRQQSAMVQAESLLRVMDGLAEVDARMRWASNKLLHLEIGVIQAVQ-- 373 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P + P E A Sbjct: 374 ----TLGEVTLSEVIEALGGAPSPDLIARRAAPPVPSRAVVEAPAAERPRPAPVAVAAPT 429 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K A P+ E PA Sbjct: 430 PAPVSLSTPKPAAAPVVEPAPLPALFREEPPPQAPVPPLFRDEPPQTDRPAPVAVAPTPP 489 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ-- 538 V + P A A + AA + W + + ++ Sbjct: 490 PVAVPAEVPPAVEPAAPTPAPAPVAEAPTSPPAAAGGTPEEQWRQIKDRFRIKSPLKADY 549 Query: 539 VALNAWKEESDNAVCLHLRSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + A++ + + + +S+ L ++ L E +S + G + L I +P Sbjct: 550 LDVAAFQSCEGKTLRIGMPTSEAGHRDALLYAPVRKALEEIMSDVIGRPMMLEINL--DP 607 Query: 595 AVRTPLEWRQAIY-------------------------EEKLAQARESIIADNNIQTLRR 629 ++ P E E D IQ Sbjct: 608 SMEPPPMAEPMFTFSDPEPAPAKAPAAPKPEPKAEAKSEAAKPAINEDFYNDPLIQEALV 667 Query: 630 FFDAELDE 637 F A L + Sbjct: 668 KFKATLVK 675 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 175/639 (27%), Positives = 268/639 (41%), Gaps = 59/639 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY V+ARKWRPQTF +VVGQ HV L N + RI H+YLF+G RGVGKTSIAR+LAK Sbjct: 1 MSYLVIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T TPC VC NC EI QG VD++EID AS ++ R+L + V+Y PA+ R+ Sbjct: 61 ALNCETGVTPTPCNVCSNCTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYRPAKSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPEHV F+ ATT+P K+P TILSRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRFDFRRIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L HI +E +A L +AR A+GS+RDA SL +Q ++ +S + V + Sbjct: 181 HMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSRDGLSDEEVLDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A++E + + ++ + RG++ ++ + +V Sbjct: 241 LGVIDRRSIHRTGTAVLEGDVRTCLDVVEDIYRRGMDIRRFCRQLCDYFRNLLVVAFGEG 300 Query: 301 A--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + E A P + LY+QT+L +E+ + R+ +EM LLR Sbjct: 301 DSRRLDLPSDEKQLLAEAAGKTTPESLYLYFQTVLKSEEEIRRSTIPRIALEMLLLRLAR 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L + A + A Sbjct: 361 LPRLESLQGVLDKISALEQGLKGATTGGGGSSAAVRDTRPPAREAARAAPPPMREPPPPG 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + P + L + E P + + RW Sbjct: 421 TGASHSSAGTGRDAPDPIVPEPATGGETIPDLPRIEG-----------EAVPLEDLSGRW 469 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A ++ KE + K + + + ++ E+ V++ Sbjct: 470 PAFLKWLELKEPILAAKLARSRIGSAAADSVELEVVEVFEEQLREPQTVAR--------- 520 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + +A TI + R Sbjct: 521 ---------------------------------IGDAAEAFFRRRCAWTIRKKPEGTGRG 547 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + ++ ++ + EL + Sbjct: 548 DTQREKKKKA----LSKRLVMEHPVVLQALEILGGELVD 582 >UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Tax=Clostridiales RepID=C7GFD5_9FIRM Length = 526 Score = 353 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 145/435 (33%), Positives = 231/435 (53%), Gaps = 3/435 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++ AK Sbjct: 1 MSYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C CR I G +++IEIDAAS V++ R + + V+Y P G++ Sbjct: 61 AVNCEHPVDGSPCGECPACRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E I +L ++ +E + E RA++ +A+AA+GS+RDALSL DQ IA ++ V Sbjct: 181 ETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYLGQDLTYDKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG +D + L+ ++E N + +I+E G E + + L + +VQ S Sbjct: 241 TLGAVDTEIFSRLLRQILEKNVTGAIGVIDEMVIEGRELGQFVNDFTWYLRNLMLVQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A+ + + Y + ++ YA +R+ +E+ +++ Sbjct: 301 DMEDVLDISTENLALLKEEAQMVDTDILMRYIRIFSELSNQIRYAVQKRILIEIAVIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 S ++ + + + A + Sbjct: 361 KPEMEKDYGSLIDRVDSLEKKLEKGIVVTQASGDMAAGTTGSSAASAVLKKKELPKAIPE 420 Query: 418 QLQRVQGATKAKKSE 432 ++++ + S+ Sbjct: 421 DIKQIMSSWSGILSQ 435 >UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V121_9FIRM Length = 615 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 165/639 (25%), Positives = 274/639 (42%), Gaps = 28/639 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ FAD+VGQEH+ L+ ++ G+I HAYLF+G RG GKTS A++LA+ Sbjct: 1 MAYVALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPCG CD+CR I G +D+ EIDAAS +++ RDL ++V++AP G + Sbjct: 61 ALNCAEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML+ +FNALLKTLEEPPE V F+LATT+P K+P TI SRC ++ + V Sbjct: 121 KIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L ++ E I E AL ++A A+G +RDALS+ DQ A +G ++ + V Sbjct: 181 TEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + E + + ++ +++ G E +LVE+ + + + Sbjct: 241 LGLVGRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLMIAGVGGT 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A ++R A +I + L ++L +P R+ E L+ Sbjct: 301 ISAAELCAGDAEQLRADAAQFSEDEIMTILRRLNETMQDLRTSPQPRIAAETLLIELCHA 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 A + + A + ++ + AA Sbjct: 361 --------DGAAVSVGAAAPHPGSADAAHIARLEAQVEELAARLAAGSVSAPISAAGGVP 412 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + K++ A + + A+ + + + + R K Sbjct: 413 PAPTPRPRTAKADSTTAPKTASKSAASSAAKVAADGAPRQLDMK------VWQSFQVRLK 466 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + A + + + + A+ R + ++ L+ L Sbjct: 467 ERNRLAASLLSGAAYEGMTETHFFIRPSSDMARDYIAKRHRAVFDEVMTALAGRPL---- 522 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + + + L E I E +PA Sbjct: 523 ---SVVCTGGEEDAVPAPPIKASPDYPAPVAALLEVAGDG------ARIEEVTSPAPPRA 573 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 E + A ++K A+ + + FD EL + Sbjct: 574 AEKKPAPPQQKQAEEDDCETYEPTPDEEAEMFDDELPPD 612 >UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A300_NATTJ Length = 589 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 156/595 (26%), Positives = 285/595 (47%), Gaps = 18/595 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ L R+WRP+ F D+VGQEHV+T L N +S RI HAYLFSG RG GKTS+A++ AK Sbjct: 1 MDYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PCG C C E ++G F+D++EIDAAS +++ R++ D+V Y+P+ G + Sbjct: 61 ALNCDHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPP++V F+LATT+P KLP+T+LSRC +F L Sbjct: 121 KVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLST 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVS 238 +I QL+++++ ++++ +L ++A+ ++G +RDALSL DQ+++ Q+ V Sbjct: 181 SKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + GT+ +D L+ A+ E + +++ ++ + + G ++ L +++ L + + +L Sbjct: 241 EVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKLK 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + +++L + ++ L ++ + ++ +RR+ VEM R + Sbjct: 301 GPSDQLLWGS-VDSVKKLHKYFTKDELISMIDFLSEKQQAMKWSQNRRLIVEMAFYRIIN 359 Query: 359 FHP--RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + + +Q + Q + L + +S Sbjct: 360 KYNTSFEAEYKEKETKQKNNEETNDKSLKVQQTTSIESVESENKENAKLQDQSSLPKQTD 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + ++K + + + ++ A+V + + + V + K + Sbjct: 420 DQSNKNNDSSKLSREDSDIQQSETKKDKMTEQQEATVQNDLNLKIVTEQWDAVLEKLKQR 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE-AIERDPWAAQVSQLSLPKL 535 + A V + K V L + E + + + + + Sbjct: 480 KVTAHALVFEGKPVDVKENTLYLGFKKLHKLHKERVEQKEKGLLEEVLSEFFGDIKVK-- 537 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ--KLAEALSMLKGSTVELTI 588 E + + + H N ++ L G ++ I Sbjct: 538 -------CIIVEETDLSKQNTKQGNDHKGNSQNEEMDDLTGIAKQKFG-PDKVEI 584 >UniRef50_B2GFF0 DNA polymerase III gamma/tau subunit n=52 Tax=cellular organisms RepID=B2GFF0_KOCRD Length = 1264 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 151/545 (27%), Positives = 231/545 (42%), Gaps = 11/545 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TF DV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFEDVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TATPCG C++CR++ + +D+IE+DAAS V+ RDL + +AP R R+K+ Sbjct: 64 AEGPTATPCGRCESCRDLARDGAGSLDVIEMDAASHGGVDHARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 124 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTHHYPFRLVPPEP 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + LE + EE ++ EP L L+ RA GS+RD+LS+ DQ +A D + +S A+L Sbjct: 184 LMRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQLMAGSDERGISYDLAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A + V + ++ G + + ++L + +V P + Sbjct: 244 GYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRFVEDLLERFRDLVVVNAVPDS 303 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 N + R+R A + ++ E+ A ++ +E+ R L Sbjct: 304 AANILHGMPTDQINRLRNQATQLGAAELSRSADITNEALNEMTGATSPQLHLELLCARIL 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + A P A Sbjct: 364 LPSADDTTRGITSRVDRLERRLSIPRGAGIRPGGPSIPPAPGAADGVDPAAPHAPGADAM 423 Query: 418 QLQRVQGATKAKKSEPAA----ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + PA + PV + S ++A + Sbjct: 424 APVAPDSPSSDASAAPAREAADPAPSGPVRQDGSQPGRSALTTPDIAEPSIPEDEAENPR 483 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + A PV Q + E + A DP + S Sbjct: 484 GSDHPAAGDPVPQGERGPQGNHPPADGTTTEHDAAGQERSPATGAPADPTKSPASSTPSR 543 Query: 534 KLVEQ 538 Q Sbjct: 544 PDDAQ 548 >UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAH1_DESAH Length = 590 Score = 351 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 174/648 (26%), Positives = 267/648 (41%), Gaps = 78/648 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+VLA K+RPQTF +VVGQ HV T L N + GR+ HA L +G RG GKT+IAR+LAK Sbjct: 1 MSYRVLALKYRPQTFDEVVGQPHVTTTLKNAILSGRVPHAILLTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCETG T TPC +C C I G VD+ EID AS V+ R+L +NV Y P+ +F Sbjct: 61 AMNCETGPTPTPCNICKTCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYMPSSSKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP+HV F+ ATT+ K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQRHDLGRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---------ASGDGQ 231 QI L + E + + LLA A+GS+RD+LSL D+ + SG Sbjct: 181 AQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRILGSQAQTSEQTSGPRA 240 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + LG +D L +A+++ G ++ L++ G++ + ++ Sbjct: 241 IDDDKILGTLGIIDKTLVFDLADAIIQNRGADIIDLVDRIHTLGLDLKRFYASLIRHFRN 300 Query: 292 IAMVQLSPAALG--NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +A+V++S + RM L + + + TLL+ + + R V Sbjct: 301 LAVVKVSSNDKNTCDISDHDRQRMAALTAPLSQSFLNQILNTLLVDESLVKLSSHTRTAV 360 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 EM LL+ + P + + A +P P P P Sbjct: 361 EMVLLKLVQIRPGIEIDLMIKRLDDLARRFDNPDFQALPQEERPVCPP------PEPRKA 414 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 + + A + + + N A Sbjct: 415 PTSMDPHPISDDNGESVPAPQPGTTPSYKPTDRINVVSPPTPEPR------------TIA 462 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 P + A RW + A+ K L+ ++ +L A +R Sbjct: 463 PPEDPAGRWNPFLKALADSLPFASAILSKGRLQKISNTDIVVELNGTAFDRGR------- 515 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + ++ G + LT++ Sbjct: 516 -----------------------------------IESKRGEIETVCHDYFGKPLHLTLI 540 Query: 590 EDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 D P E A + R+ I+ + + F+ + + Sbjct: 541 GDCAPKEYGNDEKSPA-------KLRQEILNHPLVADAIKRFNGTVVD 581 >UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZX2_HALOH Length = 588 Score = 351 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 142/396 (35%), Positives = 224/396 (56%), Gaps = 2/396 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L RK+RPQ F D+VGQ HV+ L N L GRI HAYLF+G RG GKTS A++ A Sbjct: 1 MGFLSLYRKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+NCR+I++G+ +D+IEIDAAS +++ R+L + V++ P G + Sbjct: 61 ALNCIHGPTTEPCGQCENCRKIQKGQSIDVIEIDAASNRGIDEIRELREKVKFYPNEGEY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPPE V F+LATT+P ++ TILSRC +F L V Sbjct: 121 KVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQRFDFSLLPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ +L +I +E + E AL +LAR+A G LRDA+SL DQAI+ ++ V M Sbjct: 181 REIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISYTGNNLNPIDVQGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-LSP 299 LG + + ++ ++ N + L+N +RG L+ +++ ++ +V+ P Sbjct: 241 LGKVSREVLSQFIKYVLNGNSVEALKLVNRIISRGNNVGRLIGDLIEYGRQLLLVKECGP 300 Query: 300 AALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + ++ AR I + + L + +++ Y+ + R+ +E+ +++ Sbjct: 301 DSRIIEYPDEVLEKISGEARAIKTSRLIEIIDQLTVMERDIKYSDEPRLILEVGIIKMAN 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 + + E + + Sbjct: 361 PEAGGSIIDLEKRIARLENIISGKITANDGDRITST 396 Score = 43.4 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 39/135 (28%), Gaps = 12/135 (8%) Query: 507 PELAAKLAAEAIERDPWAAQVSQLSLP--KLVEQVALNAWKEESDNAVCLHLRS--SQRH 562 + + R W + Q+ K + + + + + Sbjct: 454 EDASGGELTLDKFRKGWPVVLKQIKEKNIKAQAFLIESRPAAFDGEVLVIEFPEDKAFHK 513 Query: 563 LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 ++ + + +S + G+ ++ E + + + ++ D+ Sbjct: 514 KGAEKEKKLIEDVVSKIAGTRCQVRFRL--------AGEKEKGYNNTAVKKKEKNKKDDD 565 Query: 623 NIQTLRRFFDAELDE 637 + + FD E+ + Sbjct: 566 LVNRVMELFDGEIIK 580 >UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 Tax=Nostocaceae RepID=B2J7Q6_NOSP7 Length = 707 Score = 351 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 169/617 (27%), Positives = 265/617 (42%), Gaps = 44/617 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RP++FA++VGQE + T L N + +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC TA PCGVCD C+ I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLKSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L I ++E+I P A+ L+A+ ++G LRDA SL DQ G V+ V Sbjct: 181 QLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLA-GVVTPDRVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++GT+ + L L+ A+ + E V+ ++ RG E L + + + + + Sbjct: 240 DLVGTVSEQDLLGLLNAIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + E A+ T I + L ++ + R+ +E+TLL Sbjct: 300 PNRHDLVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L T P P AP+ P P V Sbjct: 360 L------------------------PSATTNIQPQAPNIAPRVIPPAVSPSYPPAVTQNH 395 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + ++ A+ + VT + A + Sbjct: 396 AVSSLPVAEPQTNHNSTLRQGSVTTNHHVAIAQNQPVTSSGAVEQQKNHNSAANSVSPPT 455 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 PV T + + +A W ++ L Sbjct: 456 PEPVAVPVPSAIVEAVTSEVVGEAQY---------------DLTQVWQQVLANLQPKSRQ 500 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 E + + E D + + + + A +++ I + + Sbjct: 501 EMLRQMSQLIEFDGVMARIAIKQAWYDKGKSYLPMITAAFQQTFQREIQINIEKGISSNS 560 Query: 597 RTPLEWRQAIYEEKLAQ 613 + + ++ Q Sbjct: 561 TSAKKNPPPKDSSRVQQ 577 >UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URG8_AKKM8 Length = 732 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 176/730 (24%), Positives = 286/730 (39%), Gaps = 94/730 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV ARK+RP TF DV+GQ+HV+ L N + R+ HAYLF G RG GKTS AR+ AK Sbjct: 1 MSYQVFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRLAHAYLFVGPRGTGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G D C EI +GR +D++EID AS ++ RDL DNV++AP+RG F Sbjct: 61 ALNCSGGPKVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVRFAPSRGNF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ IDEVHML++ SFNALLKTLEEPP HVKF+ ATT+P K+ TILSRC +F L+ + Sbjct: 121 RIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRCQRFDLRPIPS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L HI + E ++ A +A+ A+G +RDA S+ DQ ++ + Q V + Sbjct: 181 EIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLDQLVSFCGDHIEEQQVLHI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + ++ ++ L++E A G + L E++ + I + ++ P Sbjct: 241 FGITSRETVAHALALILNKELPSLLHLLHEQAEAGRDMSQFLSEIISAVREILVSKVDPE 300 Query: 301 ALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A + + + + EL + I + L ++ ++ ++R+ +EM L++A+ Sbjct: 301 ASFDSLPESSKEELAELVKRTHTDKILRLVEVLAETEDKMRWSTNKRLHLEMGLIKAVHT 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS--------- 410 + + + + + Q S + T P P Sbjct: 361 LAEASISDIIMALEGAPLATAAPASSSDLASQQEPSTFISSATAPTPAPRQNIQSPVAAT 420 Query: 411 -----------------------------------QVLAARQQLQRVQGATKAKKSEPAA 435 + + + P Sbjct: 421 NPTPATEEHLMDPIPDFSLSSPASSPAVQKIQSTDAQASPHPTQEAEPQQETLTPAAPPT 480 Query: 436 ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV---- 491 + + + + + + + P E Sbjct: 481 SLAVAEEEFPYSATKLRTKTVPASEEITRHPDSDASDVSKFPTDSPEPTFMDPEENLPLE 540 Query: 492 -------------ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-KLVE 537 + + +A ++ P + ++ + I + W + Q+S L Sbjct: 541 RRTNSFFDNLFDTPSTSSQTQAPVEKEEPAVLSQQSGRTITEEDWKTVLEQMSAKFPLQA 600 Query: 538 QVALNAWKEESDNA-VCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVED- 591 N+ D V + S L + L ALS G++V ++I +D Sbjct: 601 DFLANSVFSGYDGVAVAISFHPSDRQGMDSLGTGPLRTALEAALSQYIGTSVTISIRQDF 660 Query: 592 -----------------------DNPAVRTPLEWRQAIYEEKLAQARE--SIIADNNIQT 626 P TP + +E + E S D I Sbjct: 661 SIPEPVQEELAPLPAPPPSASTIPAPKPHTPQKKTAEPVQEASKEENEDNSYYTDPLIDA 720 Query: 627 LRRFFDAELD 636 F A + Sbjct: 721 AMEIFRARII 730 >UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderiales RepID=Q13Z80_BURXL Length = 957 Score = 350 bits (898), Expect = 8e-95, Method: Composition-based stats. Identities = 233/625 (37%), Positives = 319/625 (51%), Gaps = 6/625 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+TPCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LEHIL EE + ++ +AL+LLARAA+GS+RDALSLTDQAIA QV+ +AV M Sbjct: 181 GHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSLTDQAIAYSANQVNEEAVRGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ + +G V+++ +E A R + + L ++ LLHRIA Q +P+ Sbjct: 241 LGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + +QL+YQ IGR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAGD-LRRFAEALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P V + T P V + A Sbjct: 360 PAPTGGGGAVGAARAPGQSGAGGARRTGAPAVAAQQGASGSPVSQARAVAASGAVPGTSF 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q + A E A + ++ S +E PA + A Sbjct: 420 EAQVSAAAPGRETQPGNVVVADKGAVVGAVSVEPATRAVAQAGSTVEVPPAVGDVQAAAA 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV-SQLSLPKLVEQV 539 + + A EL A+ A A + Sbjct: 480 DSAQGAVAGQSPAAEPATVAGPAPVIDELNPAPASAAPAAPAPALAPWDDAPANPAAREA 539 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR-T 598 + A D+ + ++ + ++ L + V +T D + + Sbjct: 540 STTAGL---DDPAAGEVSAAAGDNGSAASEASTTAGLDDPASNHVSVTAGLSDAASNEVS 596 Query: 599 PLEWRQAIYEEKLAQARESIIADNN 623 A E L A A N Sbjct: 597 AAGLNGAAPNEALTAAALEDEAPAN 621 Score = 94.7 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + V+ A A ++ P A + W A L L Sbjct: 778 PDEGYMPVFDSGPDDVRVSAAPASTAAPVIDQRPLPPAVPLDPLGFKGDWPALAVDLPLK 837 Query: 534 KLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + Q+A N+ N + L++ Q KL AL+ G TVE+ + Sbjct: 838 GISYQLAFNSELMALEGNTLKLNVPVPQ--YAEASQVAKLKTALADRLGHTVEVLVEVG- 894 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 PA RT A+ ++ +A I AD +Q+L R F A + SIRPI Sbjct: 895 -PARRTAAAHDAAMRAQRQQEAEREIGADPFVQSLIREFGASIVPGSIRPI 944 >UniRef50_D1A8C7 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A8C7_THECD Length = 715 Score = 350 bits (898), Expect = 8e-95, Method: Composition-based stats. Identities = 171/610 (28%), Positives = 246/610 (40%), Gaps = 23/610 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA++ GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPATFAELKGQEHVAEPLQQALRNGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + G +D+IEIDAAS ++D RDL + +AP Sbjct: 60 SLNCEQGPTPDPCGKCESCVALGPGGSGHIDVIEIDAASHGGIDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + L Sbjct: 120 RFKVYIIDEAHMVTTGGFNALLKLVEEPPPHLKFVFATTEPDKVIGTIRSRTHHYPFRLL 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E +L E + +EP AL L+ RA GS RD LS+ DQ +A D ++ Sbjct: 180 PPGTLRELVEEVLQSEGVPYEPAALPLVVRAGAGSARDTLSILDQLVAGADESGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D +V+A +G V A I+ G + ++L + + ++ Sbjct: 240 VSLLGYTDSALLNEVVDAFAARDGAAVFAAIDRVIESGQDPRRFATDLLERVRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + +M+ A + + L G +E+ A R+ +E+ Sbjct: 300 VPEAGSTGLLDVPPDELEQMQRQASAMGAATLSRAADLLHAGLREMRGATSPRLALELVC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + A S AP P Sbjct: 360 ARILLPAAYQDERSLLARLEQLEQ--RIAQGGIGTTVTGGASPATGAPAPSAPAPQGLAA 417 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + + +RP + S + A+ AP Sbjct: 418 PAAAPAWPSAESASRQAPSAYPTAPSRPPAPEPPAQGPSNQSAGASPAPVQAVPAAPRPG 477 Query: 474 EAYRWKATTP--------VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 A A TP + V + A A R W Sbjct: 478 GAGWGAAATPSVGGGIPAPGAENRSVDNRWGAPSPPAPASSNAPAGGGPDVAAVRQAWPN 537 Query: 526 QVSQLSLPKLVEQ---VALNAWKEESDNAVCLHL--RSSQRHLNNRGAQQKLAEALSMLK 580 V + V ++ N + L ++ + N L E Sbjct: 538 IVEAVKKKSKVAWTSIMSGVQPVSLEGNLLTLAFEVPGARTNFVNGRRDTVLREVFREFF 597 Query: 581 GSTVELTIVE 590 G + V Sbjct: 598 GVDWRIDTVL 607 >UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=Desulfuromonadales RepID=Q3A7L0_PELCD Length = 582 Score = 350 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 177/567 (31%), Positives = 272/567 (47%), Gaps = 13/567 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ+F D+VGQEHV L N + GR+HHA+LF+G RGVGKTS AR+ AK Sbjct: 1 MSYLVLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++ PC VC +CREI G+ +D+ EID AS T V+D R+L +N++Y P+R R+ Sbjct: 61 ALNCEQGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS ++FNALLKTLEEPPEH KF+ ATT+P K+P+TILSRC +F + + + Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I+ R+L L+AR EGS+RDA S DQ IA V V + Sbjct: 181 PLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + +E+++ + R++ + G + E++ L + ++++ Sbjct: 241 LGMVDRRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCRELVETLRSLVVLKVVPE 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P AL + +R L+ T+ D++ L+ EL + R+ +EM LLR Sbjct: 301 PEALLDATPDELEELRRLSATVELEDLERAVTVLVRTEAELAGSSFPRLALEMALLRLAH 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP-QSAPQQAPTVPLPETTSQVLAARQ 417 + + + V + P S+ P P + Sbjct: 361 LPSGRDVATLVRQVEDLQRRLESGVPPAERAQPASYASSESIVAERPAPAPVQAQVPEPA 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q V A K ++ + + + + V LE + Sbjct: 421 QSTAVAAAGKGSDAQAESKPQGWQALVQRINKDRPRLGGVLEHGKLLKLELPLVELGFVE 480 Query: 478 WKATTPVMQQKEVVATPKALKKA----------LEHEKTPELAAKLAAEAIERDPWAAQV 527 MQ ++ A + + + + A + + ++Q Sbjct: 481 GSFHFSQMQDGDLQAGFVKIAEDYFGQTVTMRVVPIRAQDQAVAPPSLAEERQARESSQR 540 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCL 554 +Q+ L A K V + Sbjct: 541 NQVKDEALGHPAVKAAQKILGGEVVQV 567 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 51/472 (10%), Positives = 125/472 (26%), Gaps = 31/472 (6%) Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + R L+ R R + + D+ A+ L + Sbjct: 103 DIRELRENIRYLPSRSRYKIFIIDEVHMLSTNAF--NALLKTLEEPPEHAKFIFATTEPH 160 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAI 309 +++ R I ++ + + + +V D + Sbjct: 161 KIPITILSRCQRFDFRKIPLPLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQST 220 Query: 310 ELRMRELA-RTIPPTDIQLYY-----QTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 ++ + D+Q + L+ + L RR+ + + L R Sbjct: 221 FDQVIAFCGDAVGEDDVQGLLGMVDRRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQ 280 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 E +S + + + + + + + Sbjct: 281 FCRELVETLRSLVVLKVVPEPEALLDATPDELEELRRLSATVELEDLERAVTVLVRTEAE 340 Query: 424 GATKAKKSEPAAATRARPVNNAA---LERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A + R + + + L + +Q R A+ +Y Sbjct: 341 LAGSSFPRLALEMALLRLAHLPSGRDVATLVRQVEDLQRRLESGVPPAERAQPASYASSE 400 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS--LPKLVEQ 538 + + + + A A + W A V +++ P+L Sbjct: 401 SIVAERPAPAPVQAQVPEPAQSTAVAAAGKGSDAQAESKPQGWQALVQRINKDRPRLGGV 460 Query: 539 VALNAWKEESDNAVCLHLRSS---QRHLNNRGAQQKLAEALSMLKGSTVELTIV----ED 591 + + V L + + Q + G TV + +V +D Sbjct: 461 LEHGKLLKLELPLVELGFVEGSFHFSQMQDGDLQAGFVKIAEDYFGQTVTMRVVPIRAQD 520 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A + E RQA + Q ++ + ++ ++ E+ + ++P+ Sbjct: 521 QAVAPPSLAEERQARESSQRNQVKDEALGHPAVKAAQKILGGEVVQ--VKPL 570 >UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Tax=Bacteria RepID=B4RU47_ALTMD Length = 930 Score = 350 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 246/614 (40%), Positives = 341/614 (55%), Gaps = 12/614 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV++A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPGKFSELVGQEHVVSAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G A PCG C+ C+EIEQG +VDL+EIDAASRTKVEDTR+LLDNVQY P RGR+ Sbjct: 61 SLNCEEGQGANPCGQCNTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYKPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKAMSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL +E +A E AL LLARAA+GS+RDALSLTDQAIA G QV V+ M Sbjct: 181 EQIVGQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIAQGGNQVMASVVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ A+V + V+ L+N+ A + +++ + E+ LLH+IA+ Q P Sbjct: 241 LGLMDKNQLLKVIHAVVNKSPAEVLQLVNDIAEQAPDYDNVHSELASLLHQIALTQWVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + + +LA+TI +QL YQ L GRK+LP+A D + EMTL+R +AF Sbjct: 301 ACKLETTSAKA-IFQLAKTISAEQVQLLYQIALQGRKDLPFAADGKSAFEMTLMRMMAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ E ++ V + + Q+ P + T + Sbjct: 360 PNAPIAETVDEIENGRSEHNLPVNHASPSGGPGNVSKQEEPPLSETSAT---------ID 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + +A+ + + P + A + A + + Sbjct: 411 QGEAPIEAQPEHEPTSPKTPPQSPIADASTDLPSSAPAETVANEEEPTAVSNTQTNTAAE 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T + A+ ++ + + A A+ + P A + + L ++ Sbjct: 471 TDIAFEANLSSASASEAQEPQSNASVEDEEASPVAQYFDEPPLDAYMDDMP--PLQDESG 528 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + S++ L + L + L K + N ++ Sbjct: 529 HYELDTPESERIVEPSPSAEEQLTSTADMLALRQKLKQKKAQDADAKSNSAANAKTQSAS 588 Query: 601 EWRQAIYEEKLAQA 614 E + K A Sbjct: 589 EIQARFTRSKTDSA 602 Score = 92.0 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 90/290 (31%), Gaps = 4/290 (1%) Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 L P + + A T + S + L Sbjct: 642 PTLEAAPESEQSQDSITDHQSANTLNDGSDTQLLGGSEQASTNADFADNNDSGHDAFALD 701 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 ++ P P + + PVP A E + Sbjct: 702 DFEEDMPFSNDESDANYNPNPHVEDAPPWDTGKSVQDGHSVEPSLTPVPRANELESKEHG 761 Query: 475 AYR--WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 Y A + + + A + D W+ V Q+ + Sbjct: 762 FYERGENAGERSFTRDALDFDTPLSTTYEGSLQAYLSDGSKLTHASQIDDWSNLVEQMPV 821 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 L++Q+ L+A + N V L + SQ HL A+++L +A+ G VE++I + Sbjct: 822 AGLLKQLVLHAAFSRNGNHVSLEIHHSQTHLLKDSAKKQLVDAIHHGLGENVEVSITLGE 881 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + TP +Q I+ + A A I D IQ L FD + ++++ Sbjct: 882 PSS--TPFALQQEIHAMRHAHAHSVIKTDETIQALLSTFDGSVLTDTVKA 929 >UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 Tax=Alkaliphilus RepID=A8MKQ3_ALKOO Length = 563 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 239/470 (50%), Gaps = 2/470 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R++RP+ F DV+GQ+ V+T L N +S I HAYLF+GTRG GKTS A++ A+ Sbjct: 1 MSYKALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + A PC C+ C I +D+IEIDAAS V++ R++ +NV+Y P++G++ Sbjct: 61 AVNCLSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYPPSKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TILSRC +F K + + Sbjct: 121 KIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE I + I E AL+L+A ++G+LRDALS+ +Q I+ + ++ V + Sbjct: 181 NDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP- 299 LG ++ + LV+ + + V+ LIN+ G + L+ +++ I + +++ Sbjct: 241 LGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQ 300 Query: 300 -AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + R+R+ I + L +L Y+ + +E+ ++ + Sbjct: 301 LDELLTLPEERQDRLRQQGALFTINQITSFIYNLSDIESKLKYSAQPKTLIEIGIVGLCS 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L Q + + + Q + Q + + + +Q Sbjct: 361 KALDDSLEGLIERVQDLERKLASGNIKVEPHYNKSQISTPQNRSSHKTQPIEEKQEYKQP 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 + + P+N AL+ + + ++ Sbjct: 421 ESSPPSVDANESTAEEPVHSGAPLNFDALKESWQQILEELRKEKKAQIQA 470 >UniRef50_B4WR18 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WR18_9SYNE Length = 745 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 161/602 (26%), Positives = 259/602 (43%), Gaps = 9/602 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQTF+ +VGQ+ + L + L RI AYLF G RG GKTS AR+LAK L Sbjct: 2 YEPLHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSL 61 Query: 63 NC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TA PCG CD C+ + QG +D++EIDAAS T V++ R+L++ Q+AP + R+ Sbjct: 62 NCLSSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQCRY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DEVHMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + Sbjct: 122 KLYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPL 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L +I EE I EP A+QL+A+ ++G LRDA SL DQ + +++ + V + Sbjct: 182 PSMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQL-SLQANKITVETVWDL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + L+LV A+ + ++ + +G E +L ++G + + + +P Sbjct: 241 VGAVPERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPK 300 Query: 301 ALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + M A+ + + Q L ++ R+ +E+TL L Sbjct: 301 RVDLVAITSPTWAEMIPFAQKLSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLLP 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + P A + +A +V S + Sbjct: 361 SALEVMAKRTPASNAATNPATNRANSAAVDNARETTAATDITSSVKPKIAPSITPPIVKP 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 S A A A + + A P KA + Sbjct: 421 AIASTIQHPVPPSVDQPAQTAAT---GASKSPTEPPVSLPAIPGEPNEPKAELSDSSASS 477 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 P + + + + A D W ++ L Sbjct: 478 NNLDPAKAAVLSDPSAASATQPTPLKPAAPEKPIAVAFGNLSDLWKQILAVLQPRGTQML 537 Query: 539 VALNAWKEESDNA-VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 ++ D + RS+ R L A + +++++ D Sbjct: 538 MSQQGMLLGFDGVGAKVGFRSAPLQKAARERIPNLEAAFQTVFQRPIKISLEVVDTSKPV 597 Query: 598 TP 599 P Sbjct: 598 DP 599 >UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Bacteroidales RepID=A6LDQ5_PARD8 Length = 586 Score = 350 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 159/643 (24%), Positives = 273/643 (42%), Gaps = 67/643 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP TF VVGQ+ + T L N + ++ HAYLF G RGVGKTS AR+ AK Sbjct: 3 NYIVSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKLAHAYLFCGPRGVGKTSCARIFAKT 62 Query: 62 LNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C++CR + R ++ E+DAAS V+D R L+D V+ P G++ Sbjct: 63 INCLNPTADGEACNACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHML+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + + Sbjct: 123 KVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYDFSRISI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+++ ++E + EP AL ++A+ A+G +RDALS+ DQ ++ +G ++ QAV Sbjct: 183 ADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGNITYQAVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD + L +A++ N + ++NE +G + + ++ + G + + + Sbjct: 243 LNVLDYEYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCRDEST 302 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A+I R +E+A+ P + + + ++R+ +E+TL++ Sbjct: 303 LVLFEVGASIRERYKEMAKHCPDQLLFKAIELANTCDLNYRASRNKRLLLELTLIQLCQL 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + A P++ + P QP AP P Sbjct: 363 TQVAVDDKKKALIEPIAGTNPSSQAVNSGQPQQPPQAPSVTAAAGAP------------- 409 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + +++ P PS K Sbjct: 410 ----------------------------QVMSTHMPSSVPAPPPSTAPNPARKTARPMGI 441 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + +K T + ++ TP W + + ++ Sbjct: 442 SMKEIGVEKPKQQTVQQATTNVKEVVTP------FDNDSLVREWDNYAATIDKKVYLKNT 495 Query: 540 ALNAWKEESDN---AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS---TVELTIVEDDN 593 +N +N V +H Q L N + L + + + IVE + Sbjct: 496 MINCKPTLQENYYFEVAVHNPGQQEELINNAI--HILPFLRQHLNNSRIQMRVRIVEGNE 553 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + + + + LR F+ LD Sbjct: 554 ----------KHLAYTSTEKLELLMKINPTLGRLRDEFNLTLD 586 >UniRef50_D2R5L2 DNA polymerase III, subunits gamma and tau n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5L2_9PLAN Length = 715 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 181/643 (28%), Positives = 277/643 (43%), Gaps = 9/643 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V+AR++RPQ F +VGQ V AL N ++ GR+ HAYLF+G RGVGKTS AR+ +K L Sbjct: 42 YMVVARRYRPQDFTQLVGQAQVSQALGNAINTGRVGHAYLFTGARGVGKTSTARIFSKAL 101 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G T PCGVCD CR + G VD+IEID AS +++ R L V P+R RFK+ Sbjct: 102 NCVNGPTTQPCGVCDICRGVASGDDVDVIEIDGASNRGIDEIRQLRSGVNIRPSRARFKI 161 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHVKF+ TT+ K+P+T+LSRC +F L + Sbjct: 162 YIIDEVHMLTTPAFNALLKTLEEPPEHVKFIFCTTEADKIPITVLSRCQRFDFAPLPSQA 221 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I EH+ EP AL +LAR A GS+RD+ SL +Q ++ G Q++ V LG Sbjct: 222 ILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSYGGKQITVDDVHRALG 281 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 T + +L+ A+ + + I+ AA G++ L ++LG L ++ + ++ Sbjct: 282 TAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAEQLLGYLRDAMVLSVGASSD 341 Query: 303 GNDMAAIELR--MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +R LA + Q + L + R VE+ ++R + Sbjct: 342 MLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHGRTLVEVAVVRLCSLG 401 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + +S AP+ T A P + Sbjct: 402 QLDMLADLVAQLKSGAPLPAIPAGTAAAPRAALPPTSLPAAAPSGPPAQKKTAELAPPPP 461 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A PV AA A R P +A PA+ +Y Sbjct: 462 SLAPPAPVAAVSRPTPPVAPPVTRAAEAPRAVEPIRPAPPPRATAAPTTPARSSSYVDDG 521 Query: 481 TT---PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 P +AT + ++ + + D W +S + Sbjct: 522 EIYEGPSASDLAELATISGSRTSVAPAPVETVRPAPSRLEDASDLWQQVLSTVPEMLAEF 581 Query: 538 QVALNAWKEESDNAVCLHLR----SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + + + ++ + + ++ L A+ G + L + + Sbjct: 582 ASKATQTAISAPDRLVVRFPKAYTQAKEYCDRPEKRRDLERAIDQAAGRKLRLELELTAD 641 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 V P+ Q + I+ F AE+ Sbjct: 642 SVVAGPIPSAPQQPRMSRRQRMIDVHRKPIIRQAIEIFGAEVI 684 >UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XQ9_COLP3 Length = 715 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 267/716 (37%), Positives = 372/716 (51%), Gaps = 76/716 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++GQEHV+ LAN LS R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT PCG CD C +I+QGRFVDL+EIDAAS+TKV+DTR++LDNVQYAP+RGRF Sbjct: 61 SLNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF+LATTDPQKLP+T+LSRCLQFHLKAL V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L IL+ E ++HE L LLA+AA GS+RD+LSLTDQAIA G G ++ + M Sbjct: 181 KQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + LV +++ + + +M L E A+ + L E++ L H+IA++Q+ Sbjct: 241 LGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAELIQLFHQIALMQIVEQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + L ++ ++ + D+QLYYQ L GRK+LPYA D + +MTLLR AF Sbjct: 301 PFDLPADLLALL-KKFSQAMSAEDVQLYYQISLNGRKDLPYAFDEQAAFDMTLLRLFAFK 359 Query: 361 PR---------------------MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 P ++ + A A T+ + + Sbjct: 360 PMQKSQLTNESTIDNIEQNTAISFDDDNLSKTTETLSNNADIAKAAVTEAVVESFAEVDI 419 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + + T Q Q L Q A + K+SE + + + + E A V Sbjct: 420 SDSAAATDNTQQTELNEQMLAIEQQADELKQSENNSLNQTPAQHVVSQEVKAPQQVPVVE 479 Query: 460 R------------------------------------------PVPSALEKAPAKKEAYR 477 + ++ R Sbjct: 480 SYKEKQNTAPIVPNEQVGQLSIHSPVGSVLATRNMLRSRKKELEKQTKKSSDATLRQPNR 539 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER---------DPWAAQVS 528 + Q + PE ++I+ D WA + Sbjct: 540 ADNSKNKTQDSVNATVKPQVVSTESLVIAPEPDLPFHQDSIDPAKVTKANQVDKWAHMID 599 Query: 529 QLSLPKLVEQVALNAWKEE--SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 + L + Q+A++A E +D+ + L L + RHL+ A Q L A+ + + Sbjct: 600 SMQLTARIRQLAIHATISEKSTDDNLILKLDQATRHLSTEIAHQHLQSAICEFLARQITV 659 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T+ + P + + I +++L A+ + D + L+ F A L+EESI P Sbjct: 660 TLDIVEETVAD-PYQIQGQINDKRLEYAKTLLKEDAVVIALQETFQASLNEESISP 714 >UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibrionales RepID=B7VL96_VIBSL Length = 752 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 268/635 (42%), Positives = 355/635 (55%), Gaps = 13/635 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP F +VVGQ HVLTAL N LS R+HHAYLFSGTRGVGKT+I RL AK Sbjct: 1 MSYLALARKWRPTKFKEVVGQAHVLTALENALSQNRLHHAYLFSGTRGVGKTTIGRLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETGIT+TPCG C C+EI++GRFVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGITSTPCGECATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLPVTILSRCLQFHLK + V Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL+HIL +E++ EPRAL ++A AA+GS+RDALSL+DQAIA G+G V T V+ M Sbjct: 181 DNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIALGNGNVVTDTVAHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD DQA+ L+EA+ ++ MA I A G+EW+ LL ++ LHR+AM Q P+ Sbjct: 241 LGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQLHRLAMYQALPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R+ +++T+ P DIQLYYQ +L GR++LP +P R+G+EM +LR LAF Sbjct: 301 TLDKAQPD-AERLELMSKTLSPQDIQLYYQIVLKGRQDLPLSPTARVGIEMVVLRMLAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + QS +P A P Q Q + P + + ++ Q+Q Sbjct: 360 PAEQTVATAISTQSTSPAPAPAAQNPVQNQVQGVAQSMSQPVPEPRQQVQAPVGSQPQVQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + A + A ++ +Y Sbjct: 420 QQAPVQQPVQQQQQNPAQYSDSQGYADHSGNQGYPEQDYPHSQYDVPPAYDERPSYGADQ 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + + A + A + + + S + + Sbjct: 480 PQQQQTNYQSQSPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLRSQRRSSAATDNKGS 539 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + + + R +Q+H + A S + D+ P P Sbjct: 540 TPKKAKATSAKTSVLDRVAQQHGGSERVSPASLSASSTE-------KVTNDNEPYRWKPS 592 Query: 601 -----EWRQAIYEEKLAQARESIIADNNIQTLRRF 630 E + + ++ +A E I + L + Sbjct: 593 KPVVKEVSKELTPTQIKRALEHIKTPEMVDKLLQE 627 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 87/289 (30%), Positives = 135/289 (46%), Gaps = 7/289 (2%) Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P Q +P Q P S P + P T+ Q Sbjct: 466 PPAYDERPSYGADQPQQQQTNYQSQSPVQQPSAAPSTPPVSQEQPARATSPVSGLRHQLR 525 Query: 420 QRVQGATKA-----KKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + + A + V + ++ A S+ EK E Sbjct: 526 SQRRSSAATDNKGSTPKKAKATSAKTSVLDRVAQQHGGSERVSPASLSASSTEKVTNDNE 585 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 YRWK + PV+++ TP +K+ALEH KTPE+ KL E+I +D W+A + +L K Sbjct: 586 PYRWKPSKPVVKEVSKELTPTQIKRALEHIKTPEMVDKLLQESIAQDEWSATIQKLETAK 645 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LVEQ+ALN+ ++D ++ L LR+SQ HLN AQ +L ++L+ + G L++ + Sbjct: 646 LVEQLALNSVFAKNDTSITLTLRASQAHLNTDRAQSELLQSLNTVLGEECHLSVEIGE-- 703 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 TPLE R+ +Y+ KL A ++ D N+Q + R F AELD +S+RPI Sbjct: 704 GGETPLELRERLYQGKLKDAFTALENDANVQFIERRFAAELDRDSVRPI 752 >UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU40_DESOH Length = 570 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 170/640 (26%), Positives = 261/640 (40%), Gaps = 74/640 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q+ V L N ++ GR+ HA LF+G RG GKT+IAR+LAK Sbjct: 1 MSYLVLARKYRPQTFEEVVEQQQVTRTLTNAIASGRVAHAILFTGPRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G T TPC C +C EI G D+ EID AS V+ R+L NV++ PA + Sbjct: 61 AMNCEKGPTPTPCCACRSCLEIASGNATDVFEIDGASNNSVDQVRELRGNVKFMPAHSPY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKTLEEPP HV F ATT+P K+PVTILSRC + L + + Sbjct: 121 KIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQRHDLSFVGI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + LE + +E+I E ++L+L+A A GS+RD+LSL DQ ++S G VS + V Sbjct: 181 DPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQGPVSHEMVLEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +D + L A++ + + +++ G + + EMLG + MV+L Sbjct: 241 LGIIDREVIFGLSGAVLAGDMTGALDILDTVYRGGHDIKRFYAEMLGHFRDLLMVKLGVR 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + +M+ R + + +L + ++ ++ VEM ++ L Sbjct: 301 AERLASLPGWAVEKMQAQTRDVTELFLSQAMALMLAEEDRVRFSSQPKIAVEMVFVKLLH 360 Query: 359 FHPRMPLPEPEVPRQSFAPV-APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P +P+ + A A +AP++ + S+ AR Sbjct: 361 TKPVLPIDTLIQKVDALRKSFAQLAGNGNAPATASKDAAPERNADGAAGVSASRPAQARP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + PV + + + E+ P Sbjct: 421 APTENQPRPSSPPPASPLPEETGPVATGTTDPVPLDNAGTWEAILARIDEQYPLLG---- 476 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A + +L + Sbjct: 477 -----------------------------------------------ANLRNSTLAAMEG 489 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 N L S +L + + + L + + Sbjct: 490 GRLEIKVYGSQTNKAILAREQSMENL---------KQVCCDFFKTDINLAVTYTCDTQ-- 538 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P + + D + F + Sbjct: 539 -PAQPDKQKPRTAGP--------DPLVAEALNIFGGTIVN 569 >UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridium RepID=B8I549_CLOCE Length = 562 Score = 348 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 145/446 (32%), Positives = 220/446 (49%), Gaps = 2/446 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWRP F DVV QEHV+ + N + GRI HAYLF GTRG GKT++A++ A+ Sbjct: 1 MSYTALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I +D++EIDAAS V++ R++ D V YAP++ R+ Sbjct: 61 AINCINPKDGNPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDP KLP TILSRC +F K + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +++ I I + L+AR A+G+LRDALS+ DQ IA G ++ Q V Sbjct: 181 AGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGSTTITYQNVLDA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--LS 298 +G + DD +V+ + N E ++A + +A G + +++ + + + + Sbjct: 241 IGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +M + + + L +L YA ++R+ +E+ L+ Sbjct: 301 PENILDVGKQYLDKMIAQSEAFTKERLIGIIKELSSFETQLKYALNQRVFLEVMLISISV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + + P + + Sbjct: 361 GSYGQSGSDNNLLDRITNLESAVRTGATALGPSVKDRSSVSVQVNVANTSPVPSGKKLDN 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNN 444 L + G++ K S + Sbjct: 421 LPPIPGSSVPKSSAKGNSFNELEEWA 446 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 176/701 (25%), Positives = 280/701 (39%), Gaps = 64/701 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQTF +VV Q H+ L N ++ R+ HA SG RG GKT++AR+LAK Sbjct: 1 MSYLVLARKYRPQTFDEVVAQPHITETLKNAINQERVAHALCLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G T PCGVC +C+EI VD+ EID AS VE R+L +NVQYAPA G + Sbjct: 61 AMNCVNGPTPEPCGVCASCKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYAPALGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+PVTILSRC ++ K + + Sbjct: 121 KVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYDFKRISL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L + E+ E ++L +AR + G +RDALSL DQ +A G+ S + V + Sbjct: 181 DDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYSTGEASFEKVLDI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG +L +A+++ + + +++ ARG + + ++ ++L L + +V+ Sbjct: 241 LGVAGRKSLFALAQALLDRDVPACLTAVDQLYARGYDLKQVMADLLDHLRDLTVVKTVRD 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P L + M+E P + L + +P R+ +E+ L+R Sbjct: 301 PGPLLDIPPGEIQAMQEQVANASPAFVNQVLSLLFKEEAAVRLSPQPRLALEVALIRICE 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + + + A + P + + A Sbjct: 361 ITPAVAIDSLVAALEVLASQPASKDQIINIGPASGPAPALPESGGGSAPPAPEETTASAA 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAA-----------------LERLASVTDRVQARP 461 Q + T P A ++ QA P Sbjct: 421 EAAPQHEESTPVAASDPQTEPEPQEALAPEPEPEPEPEKEVTPEPEPEPEPPEEKPQAAP 480 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 P A ++ + + + + + Sbjct: 481 EPQAPVESAPPEPEEESIPEQAADSDAYQADDESPYYPEPDPTYAAADSEPIIPDMEPDY 540 Query: 522 PWAAQVSQLSLPKLVEQVAL---------------------------NAWKEESDNAVCL 554 ++ P +V++ A K+ + ++ L Sbjct: 541 GPPQYETREVQPYVVQEAATPEEPAAPAPEPEEDEPEPPPFEGDPWKAFSKDVQEKSIML 600 Query: 555 HLRSSQRHLNN-RGAQQKLAE----ALSMLKGSTVELTIVED---------DNPAVRTPL 600 L + L + L + TI+ + P Sbjct: 601 GLTLEKCRLKEYEKGRFVLETDGAPFSRDQLNTPENQTILTGVCKSLFGRKVQFVIEEPS 660 Query: 601 EWRQAI----YEEKLAQARESIIADNNIQTLRRFFDAELDE 637 E + EK + + + ++ R F ++ E Sbjct: 661 EENRTAPVMNQAEKRRELEQEALNHPLVEEAVRIFGGKVVE 701 >UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUL1_HALO1 Length = 649 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 186/648 (28%), Positives = 275/648 (42%), Gaps = 26/648 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP TF++VVGQEHV LAN + R+HHA+LF G RGVGKT+ AR+L K Sbjct: 1 MSYVVLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVHHAFLFCGPRGVGKTTAARILGK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C I G VD E+D AS ++ R+L + V+Y PA R Sbjct: 61 ALNCERGPTAEPCGSCVACETITNGTAVDYFEMDGASNRGIDAIRELTEAVRYQPAVLRK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TILSRC ++ K + Sbjct: 121 KVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTILSRCQRYDFKLVPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++ L I E I + A+ L+ R + GS+RD+LSL DQ I+ G + V+ Sbjct: 181 PKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYVGTSNIGESDVAE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +LV A+ E + + + + A ARG++ L ++ L +A++Q++P Sbjct: 241 VLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARAIVRYLRDLAVMQVAP 300 Query: 300 AALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A G +RE A + + + ++ +L R+ +++ L+ Sbjct: 301 EAEGLIDGSEEEAAELREHAGRLSRERVTQMFDRMVQACNDLADTQMPRLVLDLALIDVA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A P +PL + + + + P Sbjct: 361 ALEPVLPLGDLIDRLGALERRLGGGGGRGGPGGGGRGGPSRSPASAASP---------GG 411 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 Q + A+ S P + P PS ++ PA+ +A Sbjct: 412 QRGNARNPGAARMSAGDLDPELVPPPPPGVAVAPQQQQPPSQPPPPSRPQQPPARAQATP 471 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL--PKL 535 + A P A A AA A E+ W + L L Sbjct: 472 PPPPAEDF-DRPPPAEPPAAPPAGRASAPAAAAAPNAGESDMMAAWEQMLPALGETHRSL 530 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLN----NRGAQQKLAEALSMLKGSTVELTIVE- 590 + N + L + + L G V+L + Sbjct: 531 AGFYEHAKILSAAANRIEAGFAPEMSALAELAMEPESMAAMRSFLHGYFGRPVDLAVRVL 590 Query: 591 --DDNPAVRTPLE----WRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 + ++P + EE Q A + + F Sbjct: 591 SAAEAEKNQSPARSVFDLNRERAEEDKRQRELEARAHPIYKKVLSTFG 638 >UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79 Tax=Bacillaceae RepID=Q65PK1_BACLD Length = 566 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 157/553 (28%), Positives = 244/553 (44%), Gaps = 11/553 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A+L AK Sbjct: 1 MSYQALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I+ E + + AL ++A AA+G +RDALSL DQA++ +++ + Sbjct: 181 QAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L + E N + +NE +G + L+ +M+ + + Q +P Sbjct: 241 TGAVSQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ + L+R IP +D+ L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDEEFQTLSRQIPASDLYEMIDILNKSHQEMKWTNHPRIFFEVAVVKLCQG 360 Query: 360 HPRMPLPEPEVPRQSF-----APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + + V A + + P S A Sbjct: 361 PKAGASAAAQPEVDNLVNKVRQLEQEIERLKTQGVQVSSAPAQAKEASRPQKSIKSAYKA 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 ++ + E + + + S + +A KA Sbjct: 421 PVGRIHEILKDATRPDLEKLKGCWGQLLAQLKQQNKVSHAALLNDSEPVAASSKAFVLAF 480 Query: 475 AYRWKATTPVMQQKEVVATPKALKK-----ALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 Y V + + ++ PE E +D Sbjct: 481 KYEIHCKMVAEDNNGVRTNLEQILDGMLGGRIDIVGVPEAQWGKIREEFLQDHQPEDSEA 540 Query: 530 LSLPKLVEQVALN 542 + VA Sbjct: 541 NEPKEEDPLVAEA 553 >UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridiales RepID=C4ZB56_EUBR3 Length = 523 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 146/425 (34%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT++A++ AK Sbjct: 1 MSYQALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PCG C +CR I +G +++IEIDAAS V++ R + + V Y P GR+ Sbjct: 61 AVNCEHPVDGSPCGECPSCRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYRPTEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 + I +L ++ +EH+ E RA++ +A+A +GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLGEKLTYENVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D + L+ +++ + + ++ E G E L+ + + + ++Q S Sbjct: 241 VLGAVDTEVFSRLLRRILDEDVTGAIRILGELIDEGRELSQLVNDFTWYMRNLLLLQSSD 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + ++E A + P + Y + ++ +A +R+ VE+ +++ Sbjct: 301 DMEEVLDISKDNLEALKEEAALVKPETLIRYIRVFSELSSQVKFASQKRIMVEIAIIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP----QPQSAPQQAPTVPLPETTSQVL 413 S + Q Q +A + LP+ Q + Sbjct: 361 RPQMEKSYDSVLDRINSIEKKLEKGIPIAAQAAQTQDMQQAAASEPIVKKELPKAIPQDI 420 Query: 414 AARQQ 418 + + Sbjct: 421 SELMK 425 >UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PXF7_9SPHI Length = 596 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 152/636 (23%), Positives = 266/636 (41%), Gaps = 51/636 (8%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ+H+ L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFIVSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + CGVCD+C+ + G + E+DAAS V+D R+L+D V+ P G++ Sbjct: 63 INCEHITSEVEACGVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSGKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNA LKTLEEPP + F+LATT+ K+ TILSRC F + V Sbjct: 123 KIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIRV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L I +E + ++ L ++A+ A+G LRDALS+ DQ ++ + Q+S Q+V Sbjct: 183 EDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFSNKQISYQSVIDN 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L LD D L +A+++ + + ++ RG + + + L + + + Sbjct: 243 LNILDYDYYFKLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGGLSSHLRNLLVTKEPAT 302 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + I+ R E ++ + + + ++R+ VE+ LL+ Sbjct: 303 LKLLDVSDNIKKRYLEQSQKVSSGLLLSALNISNQCEINYKTSKNQRLQVELALLKMCHI 362 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + + V S QP S P T T++++ A Sbjct: 363 ATAIQMSQNGVLSGSAEVKKKRPDSAVAAPVSQPVSVPAPVVTPVSIPTSAEIKAPPSLA 422 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + V+ A V + Sbjct: 423 KPVENHPPKLADSGKKGWGAVKVGVSIPNLN----------------------------- 453 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL--VE 537 + K ++++ A + W +L + Sbjct: 454 ----------TIFEEKQVEESEGPSLVKGEAYREVNLNEFLQKWNEFAERLKAENKINLY 503 Query: 538 QVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 + +A + DN + + + ++ + A+ + L + + + Sbjct: 504 TLMTSAPPKLQPDNLIEVEVENAIQMDVLTSAKIDILNFLRVELQN-------FSLDVKG 556 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 + + + + N++TLR+ F+ Sbjct: 557 VMIEHQVSRKPYTSQEKYQAMVAKNPNLETLRQTFN 592 >UniRef50_C7MLT3 DNA polymerase III, subunit gamma/tau n=3 Tax=Coriobacteriaceae RepID=C7MLT3_CRYCD Length = 900 Score = 346 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 167/622 (26%), Positives = 260/622 (41%), Gaps = 17/622 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RPQ F DVVGQEH+ L N + ++ HAYLF G RG GKT++ARLLAK L Sbjct: 2 AEALYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAKAL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFK 121 CE G T+ P G C C+EI +G D+ E+DAASRT VE+ R+ ++ V +AP RG+ K Sbjct: 62 LCEKGPTSEPDGSCRECQEIAEGVHPDVYELDAASRTGVENVREEIIGRVNFAPTRGKAK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP HV F+L TTDPQK+P TI SRC +F L E Sbjct: 122 IYIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQRFDFHRLSNE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L + E++ E AL L+A A+G +R+AL+ +Q IA G+G+V+ +L Sbjct: 182 EIVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGEGKVTVAGAEDLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP-A 300 G+LD ++ A+ + + + G + +M + + ++ L+ Sbjct: 242 GSLDSSDLAEIMAAVGVRDAAACFSWVASYVETGADLAQFTRDMAQQVRNLYVMSLAGTD 301 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + A + + P + L EL A ++R+ E+ L R + Sbjct: 302 AALDVTDAERRELASELKLFGPNRLTHLLSILGELSSELRTASNQRLAFEIALTRMIRPE 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + L ++ + P Q ++ Q +P S + Sbjct: 362 SDLTLEALAARIETLEEQLAQSKQPAQSTPSQREAVAQSESAAGIPVQASAHVPPV---- 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 P + S Q +A Sbjct: 418 ----GASQPAQPVPVVVPQSPAATSVAAANPSTPAVSQTSVPVQGAVQASMPASQSSATT 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE--Q 538 T +P A E A ++ A + W VS + K+ Sbjct: 474 ATQSPTPATQSNSPVVQPTASVETAAGETAEIISNPAALQRVWRQVVSIVKREKVSYGVL 533 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLN-----NRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + + ++ L + L ++ L A G + L + + + Sbjct: 534 LVNASVQVQAGGQGVAILFPADNPLAFSMAQKPEVKEVLEGAFRQAIGKDIPLALKQKPS 593 Query: 594 PAVRTPLEWRQAIYEEKLAQAR 615 + + A Sbjct: 594 STTQGAASGEPLERSPLDSSAN 615 >UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPQ1_9PAST Length = 741 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 255/622 (40%), Positives = 339/622 (54%), Gaps = 15/622 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+TFADVVGQ H+L AL+NGL R+HHAYLFSGTRGVGKTSIARL AK Sbjct: 1 MSYQVLARKWRPKTFADVVGQSHILIALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G+TA PCG C++C+ IE+GRF+DLIEIDAASRTKVEDTR+LLDNVQY P +GR+ Sbjct: 61 GLNCVNGVTAEPCGECEHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPVQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRC+QFHLKAL+ Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQFHLKALEQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI LE IL +E I + AL+ LA+AA+GS+RD+LSL DQAIA +G ++ V+ M Sbjct: 181 TQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAMSNGNITLNVVNEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LDD+QA+ ++ + + NGE +M +I A +G +W+ L ++ LH+IA+ QL P Sbjct: 241 LGLLDDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDWDLFLRDIAEKLHQIAVKQLLPK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ LA I P D+Q +YQ ++ GRKEL ++P R+GVEMTLLRALAFH Sbjct: 301 DRL----DESNQLDFLATLITPDDLQFFYQVIVAGRKELAFSPTPRIGVEMTLLRALAFH 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P++ Q + V+ T P + L T A Q Sbjct: 357 PKLINSNIVESTQPQSSVSSVNNQTAYVEMPVLSQNIKSQYASNLNTRTVPKTAQNTSQQ 416 Query: 421 -RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A + V + + + + + Sbjct: 417 IPSSNVVPNNMPAVDAQRSYSQPITLKNTVESDSEYSVALEALAELDKLDNTSLSSLQKE 476 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + + + E P + K + +++ L + Sbjct: 477 KKKSDVVSLQKTIDRVTEETSPEMTALPVIETKPFEQKSFTQKQPSKL--LKSSTQPRMI 534 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT---IVEDDNPAV 596 N+ + + Q + N A T Sbjct: 535 VSNSIDISEE-----SVEVRQSAVENEIEIDSDEVAEGENLAETYRWEWSNPELAKMQDG 589 Query: 597 RTPLEWRQAIYEEKLAQARESI 618 TP E +Q++ ++ + RE + Sbjct: 590 PTPSELKQSLEKDITPELREKV 611 Score = 102 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 5/251 (1%) Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 + + + +Q Q + E V Sbjct: 492 VTEETSPEMTALPVIETKPFEQKSFTQKQPSKLLKSSTQPRMIVSNSIDISEESVEVRQS 551 Query: 457 VQARPVPSALEKAPAKK---EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKL 513 + ++ + E YRW+ + P + + + TP LK++LE + TPEL K+ Sbjct: 552 AVENEIEIDSDEVAEGENLAETYRWEWSNPELAKMQDGPTPSELKQSLEKDITPELREKV 611 Query: 514 AAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 + + D W V L + L +++ALN E+S V L + + + HL R + L Sbjct: 612 ILLSRKEDVWTNIVESLDINNLTKELALNCALIEKSGGRVTLGIHTEKSHLEKRTFVKNL 671 Query: 573 AEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 E L+ +EL I D +TP ++ + Y+ +A+E + D +Q F+ Sbjct: 672 TEELAKYYAEQIELEIRVSDE-ITQTPTDFYRQTYKMLREKAKEDLQQDKKLQLFLTEFN 730 Query: 633 AELDEESIRPI 643 ELD S++P+ Sbjct: 731 GELDLASVKPV 741 >UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Bacilli RepID=Q1WSU3_LACS1 Length = 579 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 156/591 (26%), Positives = 282/591 (47%), Gaps = 25/591 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQE V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I +GR D+IEIDAAS VE+ RD+ D V+YAP + Sbjct: 61 AINCRFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P TI+SR +F K + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I ++ +IL+++++ ++ +AL+++A+AAEG +RDALSL DQ I+ GD V+ + Sbjct: 181 ESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + ++ ++ + + I + +G + L+ +++ + + Q +P Sbjct: 241 TGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPE 300 Query: 301 ALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + ++ ++ + +EL++ I T + L ++ + ++ + + +E+ ++ Sbjct: 301 MVSDGELGLLDDKFKELSQQINVTQLYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQL 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + ++ + + + S ++ Sbjct: 361 ----------------STNSEADRVSNVDLSQIELLKQKIENLQRKVDNLSSNTVQTEKN 404 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + ++ + ++ A+ + + V L + + Sbjct: 405 NEPRKQVRKNTTKGQKNVKINLSQVYSVLNNATRQSLNELKQVWPDLMNMLSVTQRAIMH 464 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV--E 537 + PV + V + A +K E + D +V L L + Sbjct: 465 VSEPVAASENGVV--VGFEYAFLCQKALEDQELIDTLENGLDRLIGKVPSLVLIPVENWP 522 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGA----QQKLAEALSMLKGSTV 584 ++ N K+ + AV + +S++ +N Q + + L G+ + Sbjct: 523 EIRSNYLKQRKNGAVVIADDTSEQSQDNDDQSASTQPTIIQKAEELFGTDI 573 >UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N3Y5_9GAMM Length = 569 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 228/572 (39%), Positives = 339/572 (59%), Gaps = 4/572 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++F +VVGQ+HVL AL NGL R+HHA+LFSGTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFEEVVGQQHVLRALINGLDQNRLHHAFLFSGTRGVGKTTLARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+++TPCGVC +C E++ GRFVDLIE+DAASRTKV+DTR+LLDNVQYAP++GR+ Sbjct: 61 SLNCEQGVSSTPCGVCQSCTEVDSGRFVDLIEVDAASRTKVDDTRELLDNVQYAPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS SFNALLKTLEEPP HVKFL ATTDPQKLPVTILSRCLQF+L+ L++ Sbjct: 121 KVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSRCLQFNLRRLEL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L ++L +E I EP AL+ LARAA+GS+RDALSL DQAIA G G+V++++V M Sbjct: 181 TQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAIAFGGGEVTSESVFQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ DQ + +++A+++ +G+ ++A E AA G ++ + +L L +IA +QL P Sbjct: 241 LGSISQDQLILILDALLKQDGKALLAQSAELAALGRDFHVVFDFLLSALQQIATLQLVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++ ELA P IQL YQ L G+++L +A D + G +MTL+R L+F Sbjct: 301 --LEPVEANSPQLTELAAQFDPETIQLLYQIALHGKRDLSWAADPKSGFDMTLMRMLSFQ 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P + P + P V +P + + + + + + A + Sbjct: 359 PTTPPEVGDEPLKKSPPPRKPVVSSPPASEAMTTKSVSVSTSPAVKQALIEPDIAPKPQI 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + ++ A ++ + + ++ + + Sbjct: 419 KPDVIAANEPEPIDNTLISVDLSPANWTQIIAELKLSALAHQLAENSALVKCEQQSVYLS 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +P + + + L+KAL + +L A + + + + V+Q Sbjct: 479 LSPELGHLATDNSKQKLQKALSKKLGQDLKLVFADADTTFETGPTLAVERAEQQAVKQ-- 536 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 A + ++ ++++ + + + Sbjct: 537 QQAIESIHNDPTVEIIKNTFNARIIEHSIKPI 568 >UniRef50_A9BMI7 DNA polymerase III, subunits gamma and tau n=18 Tax=cellular organisms RepID=A9BMI7_DELAS Length = 731 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 245/732 (33%), Positives = 345/732 (47%), Gaps = 94/732 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RP+ F+++VGQEHV+ AL N L+ R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYLVLARKYRPRNFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNCET-----GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC+ GITATPCGVC C EI+ GRF D E+DAAS V++ + LL+ Y P Sbjct: 61 SLNCQGADGQGGITATPCGVCAACTEIDSGRFPDYTELDAASNRGVDEVQSLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 +GRFKV++IDEVHML+ +FNA+LKTLEEPPE++KF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + + E + L +L +E +A EP+AL+LL+RAA GS+RDALSLTDQAIA G GQ+ Sbjct: 181 RPMAPETVLEHLGQVLGQEGVASEPQALRLLSRAARGSMRDALSLTDQAIAFGSGQLQEA 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG++D L+EA+ +A+G+ V+ G+ + L EM +L R+A+ Sbjct: 241 TVRQMLGSVDRSHVFRLIEALAQADGQVVVETSEALRRNGLSAASTLEEMCAVLQRMAVA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q P + + LA +P + QL Y L GR EL APD + M LLR Sbjct: 301 QAVPQMAADASDPEAAEIARLAVLMPRDETQLLYSICLHGRAELGLAPDEYAALTMALLR 360 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA- 414 LAF P+ P P + + P+ + P Q A + Sbjct: 361 LLAFKPQSAEPAPGAAEKKTPALTPSTAKPESPAPVAQARPAQPAVPEAPAAPAKAAMPV 420 Query: 415 -------------------------------------------------ARQQLQRVQGA 425 L VQ A Sbjct: 421 PVAPPAPVAPVAPAASPVTAAPAVVAPVVQAVAAAAPVQAPVAVAAVARPEPVLAPVQEA 480 Query: 426 TKAKKSEPAAA----------TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + E A PV++ + +S + QA+ + E A A Sbjct: 481 RPSAAPEVQPAARVAQGPLDEPVDEPVDDVQEDEDSSADEAPQAQDADAPDEGAWAGMPD 540 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTP-------------------ELAAKLAAE 516 W ++ P A A + E A Sbjct: 541 EGWADEGRWSDDGDLALEPPAAAVARQAEPQIDTQIDVQDFAPERGRHSPGAPPAPTVER 600 Query: 517 AIERDPWAAQVSQLSLPKLVEQVA-----LNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 E D W A V QL + V +A + +A L + SS L +++ Sbjct: 601 TPEGDVWHAAVQQLVQAEAVTALARQLALQSQLVARDGDAWTLRVESS--SLAQPATRER 658 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L AL G +L + + V +P E+ A + ++ + +QTL R Sbjct: 659 LRAALEAA-GLARQLHVEQGAV--VDSPARRNAVASHERQRIAEDIVMNHSLVQTLIRSH 715 Query: 632 DAELDEESIRPI 643 A++ SI+P+ Sbjct: 716 GAKIVPGSIKPV 727 >UniRef50_D1S8R6 DNA polymerase III, subunits gamma and tau n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S8R6_9ACTO Length = 970 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 172/636 (27%), Positives = 255/636 (40%), Gaps = 27/636 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQE V L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEMIGQEQVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCR--EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG CD+CR + G +D+IEIDAAS V+D R+L + +APAR Sbjct: 60 SLNCEQGPTPEPCGQCDSCRGLAPDGGGSIDVIEIDAASHGGVDDARELREKAFFAPARS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + Sbjct: 120 RFKIYIIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLF 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 + +R LE + E + EP L+ RA GS+RD+LS+ DQ IA + V Sbjct: 180 PPKVVRPYLEQLCEAEGVKVEPAVFPLVVRAGGGSMRDSLSVLDQLIAGAGPEGVGYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ A G + ++L L + ++Q Sbjct: 240 AALLGVTDAALIDEMCDALAAGDGAAAYATVDRVAEAGHDSRRFASDLLERLRDLIVLQQ 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A RM A+ + P + + G E+ R+ +E+ Sbjct: 300 VPDAAARGLIDGPADQIERMAAQAQRLGPATLSRCADIVHNGLVEMRGTTAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + P Q P Sbjct: 360 ARMLLPGADDSSGGLLQRLERMERRLTLGGAELPPAAADPAHPTQTQGVRPAAPAPGAAA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 AA A + AAA A A E A Sbjct: 420 AAVHADSAGTPAAAGAPTGAAAARAAAAAAVGARNAAPGSRPAPAGTEPAGDPEAASPAP 479 Query: 474 EAYRWKATTPVMQQ--------------KEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 A A P + E + Sbjct: 480 AAPERAAVDPAASGSPAAASDAPAAARRPVPPSAVMPDPATPEPPRPGAANPGALDAVAV 539 Query: 520 RDPWAAQVSQL--SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 R W V ++ S ++ + ++ + + L ++S+ L +AL Sbjct: 540 RRVWPEVVGKVNRSNKRIAALMRDAVVRDLDGDTLVLTVKSTVLAKMMADHAAVLTDALY 599 Query: 578 MLKGSTVELTIVEDDNPAVRT---PLEWRQAIYEEK 610 G ++ + P A + Sbjct: 600 EELGGRWQIRCEVAGERGASSLGGPSRPSGASRAQA 635 >UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bacteria RepID=A4CK17_9FLAO Length = 631 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 156/641 (24%), Positives = 259/641 (40%), Gaps = 32/641 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + V ARK+RPQ F DVVGQ+ + L N + + A LF G RGVGKT+ AR+LAK + Sbjct: 15 FIVSARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKI 74 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 N + + ++ E+DAAS V+D R+L+D V+ P G++KV Sbjct: 75 NEDGNQRDG------------EDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKV 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC F + + V Sbjct: 123 YIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDFRRITVGD 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 L++I ++ I + AL ++A+ A+G++RDALS+ D+ ++ +++ +AV+ L Sbjct: 183 AASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNKLTRKAVAENLN 242 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-A 301 LD D + +++ + ++ NE A+G E + + + + A Sbjct: 243 VLDVDVYFESTDHILKGDIPALLIYFNEILAQGFEGHHYINGLASHFRDLMVCTSQETVA 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 L ++ R E A + + + + R+ VE+ L++ + Sbjct: 303 LLETSESVRQRYLEQASHCSGEFLLAALDLANQCDLDYKTSKNHRLLVELCLMKLASLTQ 362 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 R P A TP + + S Q Sbjct: 363 RQKKKARNGEDAWLIPAAAFHNQTPPPETVSEPESTSKPAAGAQEGAESSPETVGSAHQT 422 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + ++K + R + A P + P K+ K + Sbjct: 423 TESIPESKDMPESKDIREPEGAEQSQSPDNQKETSAPAGPKETPAPTLPVGKKKSGQKVS 482 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL---VEQ 538 + KA + +L E+ + W Q Sbjct: 483 GLSLSSIRAKKAHKASRHHAAPNPE-DLPRDPFEESELQALWKEFAEQTEKRGRKILAAS 541 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS-TVELTIVEDDNPAVR 597 + + K D+ + + L +S Q +L + L + ++L I ++ A + Sbjct: 542 LGTDLPKLIGDHVIWIELPNSTMKKEVERDQFELMDFLRTQLNNHHIQLKITVNEETAKQ 601 Query: 598 ---TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 TP E Q + + I LR+ FD EL Sbjct: 602 FAFTPEEKYQKLR-----------EKNPAIDLLRKTFDLEL 631 >UniRef50_C7NGE4 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcineae RepID=C7NGE4_KYTSD Length = 796 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 161/619 (26%), Positives = 249/619 (40%), Gaps = 30/619 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RPQ F++VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPQNFSEVVGQEHVTGPLQQALRTGRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T +PCG CD+C+++ +G VD+IEIDAAS V+D RDL + + PA+ Sbjct: 60 CLNCEQGPTDSPCGECDSCQDLARGGAGSVDVIEIDAASHGGVDDARDLREKASFGPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++ FNALLK +EEPPEHV F+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTSAGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 ++ L + E I EP L + RA GS+RD++S+ DQ IA D ++ Sbjct: 180 PPAVLQEYLAQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLIAGSDDAGITLAGT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +V+A +G + + G + + ++ + + +V Sbjct: 240 TALLGFTDSELLDGVVDAYAAGDGASLFTTVERVVESGQDPRRFVEDLSERMRDLILVNA 299 Query: 298 SPAALGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P + R+R A + P ++ L G E+ A R+ +E+ + Sbjct: 300 VPTGTEAVLPGVPSDQLDRLRVQASGLGPAELSRASDVLFHGLAEMTGATSPRLQLEIIM 359 Query: 354 LRALAFHPRMPLPEPEVPRQ-------SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 R L + A P Q A Q +P Sbjct: 360 ARLLLPRAAGEGGFAARLEKVERWMAFRGDASAGGTAGAQAGAPAQEAPASQGSPVAQSA 419 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 A +Q+ R Q + ++ + Q A Sbjct: 420 PAVPAAAAPQQEQSRAQEPARRDQTPRDEQREQEQPARQDRTPQGEERAQEQPAAPQPAA 479 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE----------HEKTPELAAKLAAE 516 E+AP + + E + A Sbjct: 480 EQAPPVPDEPPADMWEAEEAAAAAGPDSAGDRTPEPGAPQQAQQAAPEGSSSPGAAPVPL 539 Query: 517 AIERDPWAAQVSQLSLPKLVEQVA-----LNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 R W + +L V + + + + Sbjct: 540 ETLRHEWPTVLDKLKDISRVTWALVSQSMQVQDLSSEGLTLATEVAPIAERFSRGENADR 599 Query: 572 LAEALSMLKGSTVELTIVE 590 +A A+ G + V Sbjct: 600 VAAAVQEALGFHPRVRCVV 618 >UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 Tax=Thermoanaerobacterales RepID=C6PF43_CLOTS Length = 533 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 142/429 (33%), Positives = 224/429 (52%), Gaps = 1/429 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP+ F++V+GQ H++ L N + GRI HAYLF GTRG GKTS+A++ AK + Sbjct: 2 YQSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C C +D+IEIDAAS V+D R+L DN+ YAP+ ++KV Sbjct: 62 NCPNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TILSRC +F K + + Sbjct: 122 YIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSKV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + I + +I E RA+ ++AR GS+RDA+S+ +Q ++ + ++ V +LG Sbjct: 182 ISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSY-NDVLTYDDVCDILG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 T++DD +LV+ + + N + V+ I++ GI+ L+ ML L I + + Sbjct: 241 TVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCGTES 300 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + A + + + L+ + ++ YA R+ E+T+L+ + Sbjct: 301 EEILETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLMNPEIS 360 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + + + +V A + + + Sbjct: 361 PDIDSILDRIKKLENRLNNVKVAFNGENDAGIISKKDVVKSEKGVQNDKVAADEIKKEHI 420 Query: 423 QGATKAKKS 431 + A KS Sbjct: 421 EITESADKS 429 >UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCQ4_PLALI Length = 682 Score = 345 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 282/631 (44%), Gaps = 3/631 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLAR++RPQTF++VVGQ+ + L N + GR+ HAYLF+G RGVGKTS+AR+ AK Sbjct: 5 NYTVLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKA 64 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + A PC C+ CR + G+ VD+ EID AS ++D R L NV R R+K Sbjct: 65 LNCPNAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSMRTRYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP+ VKF+ TT+P KLP TILSRC +F +++E Sbjct: 125 VYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGTVNIE 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I N E + A++L++R A GS+RD+ SL DQ +A G V+ V +L Sbjct: 185 SIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADVHRLL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--P 299 GT DD+ + LV+A+++ + R + +++A G++ +AL +++ L + + Sbjct: 245 GTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDLMVTAAGVKG 304 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + R+ A I Q L + ++ A R E+ L+R Sbjct: 305 IALLGATESSRSRVETQAEAWGLKTISAALQILAEAKIKMARATWGRALTELALVRITLL 364 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 L E Q + A ++ P S P V + + + + Sbjct: 365 EDLSRLDELIARFQGKSIPATSSSGRLATDRPMNSSPRVLPPPVAIIQGSPESRDLPDVQ 424 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + + A N + + T V + S++ + A+ E Sbjct: 425 ESQPEFQSQTEPQHHQHATANTSNATVVPVSSDATVSVDSSAEASSISTSLAEPELVFQP 484 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + L+ ++ E + + L P +V ++ Sbjct: 485 GNEATLLEYLRTKNTDLTGIHLQRATHCQITGPTQLEIVISANHRFEQQCLEQPNIVSKL 544 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + ++ L + H ++ +E+ S D Sbjct: 545 -EQQLRTATGTSIRLRFTTGSAHESSESNPLIHSESPSSKDNPASSPNGQLADGNGGVAQ 603 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 E E+ S+ I+ R Sbjct: 604 PETSLNSRVERQPLPHPSVTETPAIRPASRT 634 >UniRef50_B8G7M2 DNA polymerase III, subunits gamma and tau n=3 Tax=Chloroflexus RepID=B8G7M2_CHLAD Length = 613 Score = 345 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 179/649 (27%), Positives = 281/649 (43%), Gaps = 47/649 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ Q L RKWR QTFA++VGQEHV+ L N ++ R+ HAYLF+G RGVGKT++ARLLAK Sbjct: 1 MAVQSLYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAK 60 Query: 61 GLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC +A PCG C+ C I +GR VD+IE+DAAS T VED R++++ VQ+ P+ R Sbjct: 61 AVNCLHPDPSARPCGTCEMCTAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPSVAR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDE HMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 MKVYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V + + I E I A + +ARAA GS+RDAL + +Q + +G ++ Q V + Sbjct: 181 VTSMAAHVRRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFVEGPITLQHVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +L+EA++ A+ + +N A +G + +++ L + ++ + Sbjct: 241 LLGMTAAAEVDALIEALLSADLTAALRAVNAVANQGADLRQFARDVVERLRAVMLLNATG 300 Query: 300 AALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 D+ ++ + A+ + + + +L P Sbjct: 301 DRTLLDLGDDEVAQLMQWAQRAEMAALVQWVKLFSGLDYQLRTTP--------------- 345 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + P PQ P+VP TTS Q Sbjct: 346 ------YGHLPLEVAVVEALVAPVPVVQPVTPHPHAVRPQSRPSVPASPTTSSARPNIDQ 399 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 A + PV + S + + P E+ Sbjct: 400 SMAFTVAPALTQPS-------APVKPSRATPPPSTEPPTSSPLPATPPVAPPTTPESGVA 452 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 P V A + + +++ A+L+ W + Q Sbjct: 453 PTADPPPPPPAVWAAVQQSRPPVDYPAARAADAELSLLERLEATWEDFKRDVRPRSPTVQ 512 Query: 539 VALNA--WKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 LN+ + N + L + S+ L + + E L G T + ++ Sbjct: 513 ALLNSARPYDVEGNTIILLVTSTFHKERLEEPKNRAIIEEVLRRRFGKTYAVRCTIEEKS 572 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P++ R I E + D ++ FDA + I P+ Sbjct: 573 TE--PIDLRAKIREAR---------KDELVRAALNIFDAHIV--GIEPL 608 >UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 Tax=Clostridiales RepID=A9KQC7_CLOPH Length = 522 Score = 345 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 141/427 (33%), Positives = 227/427 (53%), Gaps = 3/427 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP TF DV GQ+H++T L N + RI HAYLF GTRG GKT++A++LAK Sbjct: 1 MSYMALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC C C+ I+ +++IEIDAAS V++ R++++ V+Y+P G + Sbjct: 61 TVNCEHPIDGNPCNECAMCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPTEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + + Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 ++I +L I +E I E +AL+ +ARAA+GS RDALSL DQ IA GQ ++ V Sbjct: 181 DEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYFGQSLTYDNVLD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LGT+D + L+ + + + +A++ E +G E ++ L + + + S Sbjct: 241 ALGTVDIEVFARLLRYIRKGSVTDCVAILEELIIQGRELTQFTIDFTWYLRNLLLAKTSE 300 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + +++ A++ + + + ++ YA +R+ +E+ L++ Sbjct: 301 DMEEILEMSSDQLQLLKQEAQSCDTELLIRFIRIFSELSNQVKYATQKRVMIEVALVKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 Q V ++ + + + Sbjct: 361 KPAMETDYASLIHRIQVLENRLEEGVFVTSKDEIEGAVPVVEKAKKASVPVELPKAVSAD 420 Query: 418 QLQRVQG 424 + + Sbjct: 421 LQEVARN 427 >UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLY2_ACIFE Length = 671 Score = 345 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 165/597 (27%), Positives = 247/597 (41%), Gaps = 31/597 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRPQ F D+VGQ + AL N L GRI HAYLF+G RG GKTS AR+LAK Sbjct: 1 MAYVALYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PC C NCREI +G D++EIDAAS +++ R L + V +AP R+ Sbjct: 61 ALNCEKGPTAHPCNQCSNCREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM++ +FNALLKTLEEPPEHV F+LATT+PQK+ TILSRC +F + V Sbjct: 121 KVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFDFRRATV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I LE + HI EP AL+L+A A+G LRDALSL DQ V+ + V + Sbjct: 181 DEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMAS-PVTAETVRQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ LV + + N + + + +G E E +L E+L + + Q Sbjct: 240 LGLVGREKLRELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYFRALLLYQADRE 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E A + I + + +E Y+ +++ E+ L Sbjct: 300 YQEIYLTDTREALAETASLFTSSQIVASVERIHEAIRESKYSLRKKIVGELCLFDLCENR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 VA T A + + Sbjct: 360 GNTEAALLARIDSLEQQVAALRQGNGTAPTFVTAVPAAPAAVQAVSASRPVP-------- 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + Q Sbjct: 412 ------QGPVPATPGPSAPPTGGTVRDAFARMAAAARQEISQEPPAPAPAEPAPVPAPAP 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + A P+ + + + W + L + + Sbjct: 466 LPEARPEAGPAAAPEGEPQFDGSGRAQA-----------QQLWQLVLQGLKQRRKRTFLV 514 Query: 541 ---LNAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + + D + L + S+ + + + + L G ++ L +V+ + Sbjct: 515 YAEMARAADYQDQELLLGVSSAYGKEKMEEPAFRNLIQDILKGAVGQSIRLRVVQQE 571 >UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clostridium RepID=C9XIC8_CLODC Length = 545 Score = 344 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 225/378 (59%), Gaps = 2/378 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L R +RPQ F DV+GQ+H++ L N + I HAYLF GTRG GKTS A++ ++ + Sbjct: 2 HKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC I PC C+ C + + +D++EIDAAS V+D R+L ++V+Y+PA ++KV Sbjct: 62 NCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATT+P K+P TILSRC ++ K + V+ Sbjct: 122 YIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +++ I +E I + +AL L+AR ++G+LRDALS+ DQ ++ G+ ++ + V ++G Sbjct: 182 MTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +++ +Q L + +VE + ++ + ++NE G + L+ +++ + + ++S Sbjct: 242 SVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELD 301 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +++ ++ I D+ L I + ++ + + R+ VE+T+++ Sbjct: 302 EIISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIAQPM 361 Query: 361 PRMPLPEPEVPRQSFAPV 378 ++ + Sbjct: 362 FDESKEALIKRVENLEKM 379 >UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subunits n=3 Tax=Bacillus RepID=A8FAE4_BACP2 Length = 570 Score = 343 bits (880), Expect = 9e-93, Method: Composition-based stats. Identities = 160/565 (28%), Positives = 262/565 (46%), Gaps = 13/565 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PC CD C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +++ I++ E + + +L+++A AA+G +RDALSL DQAI+ Q++ + Sbjct: 181 KDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L EA+ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPD 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ L+ + P + + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDENFVTLSDRVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQA 360 Query: 360 HPRMPLPEPEVPRQSFAP-----VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL- 413 +P + + + VP PQ+ P P+T+++ Sbjct: 361 TAGIPQAHANADLTTLTDKIDRLEQELSRIKAEGVPMSHSQHPQEKKEAPRPQTSNKNGY 420 Query: 414 -AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A ++ + K + E + + + S + +A A Sbjct: 421 RAPVGRIHEILKEAKRPELEKIKGKWGELLAHLKQQNKVSHAALLTDSEPVAAATHAFVL 480 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKA-----LEHEKTPELAAKLAAEAIERDPWAAQV 527 K + + V + L ++ +E P+ E RD + Sbjct: 481 KFKFEIHCKMVAEDKSGVRTNLEQLLESMLGKRVELVGVPDAQWGKIREEFLRDHQPDEQ 540 Query: 528 SQLSLPKLVEQVALNAWKEESDNAV 552 + E + K+ + Sbjct: 541 ADGQGTPAEEDPLIAEAKKLVGTDL 565 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 162/546 (29%), Positives = 257/546 (47%), Gaps = 6/546 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R +RPQTF DVVGQEHV T L N L R+ HAYLF+G RG GKTS A+++AK Sbjct: 1 MAYTALYRVYRPQTFQDVVGQEHVTTTLRNALRENRLSHAYLFNGPRGTGKTSAAKIMAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE I PC CD CR I G D++EIDAAS VE+ RD+ D V++AP+ R+ Sbjct: 61 AVNCEQPIDGEPCNQCDTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P KLP TI+SRC +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRCQRFDFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + L+ I + + E +ALQL+A+ AEG RDALSL DQAI+ +V + + Sbjct: 181 RVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSKDEVRASDIMQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + E + +VM ++ +G + E L + L + +++ +P Sbjct: 241 TGTVAQSYFSVLARHIAENDIAQVMEQFDKVMVQGKDPEQFLHDFLYYYRDMLLLKTAPQ 300 Query: 301 ALGND-MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 I+ + E+A+ + +T +L ++ R+ VE+TL++ Sbjct: 301 LEEIVERTMIDDQFAEVAKLYSFPVLYAAIETCNQALSQLKWSTYARVLVELTLVKMCQP 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + P S A + + + Q + + + +++ Sbjct: 361 NANATESMGASPVNSEELTAMSNRIRVLEERLVQVMQGQVSTPG-QQKAEETRKSEPRRI 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 G ++ + +A N R + + + + + Sbjct: 420 AAASGGSRTPMNRVREVAKAMDENLTRQVRGQWSQILTELKKIKIQYQAWLVNGQPVAAG 479 Query: 480 ATTPVMQQKEVVATPKALKKA----LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 V+ + K ++ +E + L L ++ + W + Q+ Sbjct: 480 NEAVVVTFNSAIHCDKTMEAELRSVIERVMSTVLGRPLQLLSVMEEEWQSVDQQVGQKDA 539 Query: 536 VEQVAL 541 ++ Sbjct: 540 SDEPEE 545 >UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Tax=Veillonellaceae RepID=C9KLC0_9FIRM Length = 631 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 172/588 (29%), Positives = 269/588 (45%), Gaps = 5/588 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRPQTF D+VGQEH+ LAN ++ G I HAYLF+G RG GKTS A++LAK Sbjct: 1 MAYIALYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCG C+ CR+I G +D+ EIDAAS +++ RDL + V++AP GR+ Sbjct: 61 ALNCEHGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TI SRC ++ K + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L +I E + E AL ++A A+G +RDALS+ DQ A +G ++ + V + Sbjct: 181 EEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D + +A+ N + + ++ E G + + +L E+ L + + Q + Sbjct: 241 LGLVGHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLRSLMIFQAAGT 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + A + +++ A+ P + L E+ ++P R+ VE+ L+ Sbjct: 301 VEAMDLYAEPQDVLQDQAKLFAPEVLPRMIARLHEAMTEMKWSPQPRITVEVALMELCRP 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 E S P A ++ + ++A Q + T + Sbjct: 361 ELVASTQENAGQAASNGPRAASSNPADEARIAKLEAALAQVTALLKQATAGAGVRPAVAP 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + A T A L +V + S E+ A A Sbjct: 421 ATGVPTPAPAPAAAPAVTPAPADVPEEPAALDEAGLQVWNQLFQSLREQHKAPILACIQN 480 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A M + ++ A + + + + + P Sbjct: 481 ARFMGMTASQFHMRMQSGLMASLVMRNYRKIIERILQELTGRELRLVCAGEDAPMKAPPR 540 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNN---RGAQQKLAEALSMLKGSTV 584 A + + + + + L +A + G+ V Sbjct: 541 PRPAAPKIAPRRETPPAKPEPTEILEEVAPDERASLKKAF-DVFGANV 587 >UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJV5_9BACT Length = 533 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 144/409 (35%), Positives = 220/409 (53%), Gaps = 1/409 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARK+RPQ F +V QEH+ L + ++ RI HAYLF+G RGVGKTS+AR+LAK Sbjct: 1 MSYIVLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC C NC EI G D+IEID AS T V+D R+L + Y + + Sbjct: 61 SLNCVNGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPASSSNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+++FNALLKTLEEPP++V F+ ATT+PQK+ TI+SRC ++ K + + Sbjct: 121 KIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E I + +L L+AR A+G +RDALSL DQAI+ ++ V + Sbjct: 181 ASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + + + + + ++ ++ +GI+ + + M + I +++ Sbjct: 241 FGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFVR-ILILRKLQV 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + ELA + L+ R +L + + + +E +++ Sbjct: 300 QIKDINPDELSLFDELAELFGQNKLLYILSYLIACRNDLRGSSNPYLILEALMIKLCKLD 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 + A P ++ +PT S + VPL E T Sbjct: 360 EMEDIASLIGKININAFAQPVSMASPTTAKTIQSSYVASSAEVPLREET 408 >UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 Tax=cellular organisms RepID=A3D5Q4_SHEB5 Length = 1147 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 260/664 (39%), Positives = 353/664 (53%), Gaps = 30/664 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGACGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I QL HIL +E + A++LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 GEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAFGGGNVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 AAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMPLPEPEVPRQSFAPVAP-------------TAVMTPTQVPPQPQSAPQQAPTVPLPE 407 P P+ + + + V P P P Sbjct: 386 PEKPVKRWQPDAVAEIRLPEWQTPVAATAAAQAPHVNEPQFAETHTAEPHTAEPHSTEPH 445 Query: 408 TTSQVLAARQQLQRVQGAT-KAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 V A ++ Q + + ++ A A V+ + + V D Sbjct: 446 IAETVPAEKKTALIEQTSANQQVETAQADAVDMAEVSIEPADTVEQVFDAELEADAALIA 505 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 E+A +A + V A + + + + P + IE + Sbjct: 506 EQAVILSQAQSQGFNADSLNADTVNAEVEPQTQTVSTAQAPSIHISEPVADIEASVASLD 565 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 +P+L+ A ++ + + S+ + + +T+E Sbjct: 566 AQNSEVPELIGATAESSIVNPAMAETLVGSTSADNNSAAENTLDN-----NPTTNNTLEQ 620 Query: 587 TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI---------QTLRRFFDAELDE 637 +++ +P A+ + A D + FD+ Sbjct: 621 NGLDEHSPYGTEAEHSYPAMGDYAQESAPLDSYQDAYVELSSGSYNDDDFHHSFDSHAVP 680 Query: 638 ESIR 641 + ++ Sbjct: 681 DDVQ 684 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 5/303 (1%) Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 D + ++ L P + V V T P ++AP+ A T Sbjct: 820 LDPDLTIDFDDDFDLDLEPIALHQSVPSAASASGSVPADPVKPATYDRPPWEAAPEVAST 879 Query: 403 VPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV 462 L ETT + A++ + + + Sbjct: 880 AELIETTQVDSGNTDIADAGMAQGSDINDDSASSGQGFLEASNIANDGQNNAADGNDSQS 939 Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH-EKTPELAAKLAAEAI--- 518 + + + + V A+ AL + E+T E L+ I Sbjct: 940 AEQGSDSKLQALQTQARHQDKVQATALTPASKTALTQTASAVERTQEREVALSTLPISGH 999 Query: 519 -ERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS 577 W ++ L + V Q+A+N+ + + + L L+ +Q+HL A +L +ALS Sbjct: 1000 PLDLHWYKLMASLEVGGRVRQLAVNSVCQTQSDPLPLLLKPNQKHLAADVAIVQLEQALS 1059 Query: 578 MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 G+ + +V + TPLE R+ ++E L QA +S+I D+N+Q L + AELD Sbjct: 1060 AALGNPRRVQVVIGIDAQRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDA 1119 Query: 638 ESI 640 +S+ Sbjct: 1120 DSL 1122 >UniRef50_A8LYH3 DNA polymerase III, subunits gamma and tau n=8 Tax=Actinomycetales RepID=A8LYH3_SALAI Length = 834 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 168/634 (26%), Positives = 254/634 (40%), Gaps = 20/634 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+TFA+++GQEHV L+ L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C +CR + +D+IEIDAAS V+D R+L + +APA+ Sbjct: 60 SLNCEHGPTPEPCGTCGSCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFAPAQS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM+S FNALLK +EEPPE+VKF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 + +R LE + E + EP L+ RA GS RD+LS+ DQ IA + V+ Sbjct: 180 PPKVLRPYLEQLCQAEGVQVEPAVFPLVVRAGGGSARDSLSVLDQLIAGAGPEGVTYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +A+LG D + +A+ +G A ++ G + ++L L + ++Q Sbjct: 240 AALLGVTDSALIDEMCDALAAGDGAAAYATVDRIVGAGHDPRRFAADLLERLRDLIVLQR 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + RM A+ + P + + G E+ A R+ +E+ Sbjct: 300 VPDAAPKGLVDGPDDQIERMTAQAQRLGPGTLSRCADIVHDGLVEMRGATAPRLLLELIC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + A P P + AP+ S Sbjct: 360 ARMLLPGADDSAGGLLQRLERLERRLTLAGTDALPAAPAPSAGAAPAPSAGAAPALSAGA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A+ + A + + ++ + A+ A P + Sbjct: 420 ASASDDSPRRPPAAAVPASAEDPAGSLAMSGTSSGLAAARAAAAPAGSRADQPPGQPDRP 479 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL--S 531 A+ E + A R W V + Sbjct: 480 GPDASDASRRAS----ARPAVMPDPVTPEPPRPGTTDRGTLDAAAVRRHWPEVVGLVGRK 535 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE- 590 K E + L R L E+L G ++ Sbjct: 536 SKKAAAWAREATVHEVDGETLVLAFRYPFHAQALANEPDLLIESLYEELGERWQIRCEVA 595 Query: 591 -----DDNPAVRTPLEWRQAIYEEKLAQARESII 619 R P R + + + Sbjct: 596 GERVGGPGAGPRAPGPARPVTAPARPEPSTAPVE 629 >UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E6B7 Length = 834 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 262/694 (37%), Positives = 362/694 (52%), Gaps = 54/694 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+TA++N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPNKFSELVGQEHVVTAISNALDNNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG++A PCG C CR+IEQGRFVDL+EIDAASRTKV+DTR+LLDNVQY P +G + Sbjct: 61 SLNCDTGLSANPCGECGTCRDIEQGRFVDLLEIDAASRTKVDDTRELLDNVQYRPTQGDY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI+ QL H+L +EHI HEP AL LARAA GS+RDALSLTDQAIA G+ Q+ST VS M Sbjct: 181 EQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSLTDQAIAQGNNQISTVVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +Q L ++ +M+E + V + A + +L E++ LLH+IAM Q+ P Sbjct: 241 LGLMDKNQILKILHSMIEGDKIAVFEQVESLAQTSPNYAHVLDELMSLLHQIAMTQVVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + +LA +I +QL YQ L G+++LP++ D R G EM LLR LAF Sbjct: 301 VCKLETISARA-IYKLAGSISKEHVQLLYQMALNGKQDLPHSMDGRSGFEMVLLRMLAFT 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ ++ V +P+ + + P + + + Sbjct: 360 PVTPIDGFVDIIKTDMQNHIAEVGEMVTFAAEPEVVSPEPTILEAPVIEQEPKSTTNPMI 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A K V + + V+ ++ + ++ Sbjct: 420 ESESAVDPKAQPETIVPYQSEVREEIDPEPTTAPEPVKEPVSVIVEDEENSAEKVDFSAV 479 Query: 481 TTP-----------------------VMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + + +A E + L EA Sbjct: 480 MNDMFSEPEPEPEPEQPQVSVSTLQGPDESAMFQEQAEIMHEAHEMHPSQFDEQSLPPEA 539 Query: 518 IERDPWAAQVSQLSLPKLVE----QVALNAWKEESDNAVCLHLRSS----QRHLNNRGAQ 569 D ++ + + + + VA NA + + L+ S L + + Sbjct: 540 YMNDDYSDVPIDVQVEQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKASI 599 Query: 570 QKL---AEALSMLKGS------------TVELTIVEDDNPAVR---TPLEWRQAIYEEKL 611 KL ++ KG ++L V D TP+ I E Sbjct: 600 NKLDSETPIVAEHKGESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTEPE 659 Query: 612 AQAR--ESIIADNNIQTLRRFFDAELDEESIRPI 643 QA D + L ++EL + +++ + Sbjct: 660 VQAESLSQPERDPSKMGLVD--NSELVKVTVQKV 691 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 4/282 (1%) Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + P+ + P +S + + S+ + Sbjct: 555 EQESQPQINTVASNAIDDLLALSDDLNTDSPSNESNESLVEKASINKLDSETPIVAEHKG 614 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + K A + E + ++ + Sbjct: 615 ESKPEMELKPELFEMQLDAVADSQTVPELNTTPIMSAPTIQTEPEVQAESLSQPERDPSK 674 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V + V T + + P A + D W + QL+L L +Q+A Sbjct: 675 MGLVDNSELVKVTVQKVDVQGLQAILP--NGDKLTSAAQIDEWTNVIGQLNLTGLNKQLA 732 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 ++A + V L L + HL+N + LAEALS+ +++ L + + TP Sbjct: 733 IHASFSREGDVVTLLLGQDKAHLHNETSVNALAEALSVFFDTSITLQVSFGEPIN--TPY 790 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 + I + + A+ + ++ +Q L+ F + +++P Sbjct: 791 ALQMHINQIRNEYAQSILNSNPELQKLQSTFGTSVVSGTLKP 832 >UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 Tax=Bacteria RepID=C9L9Q0_RUMHA Length = 538 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 140/422 (33%), Positives = 227/422 (53%), Gaps = 3/422 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y L RK+RPQ F DV GQEH++T L N + RI HAYLF GTRG GKT+IA++LA+ Sbjct: 1 MGYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + +PC C CR I +G +++IEIDAAS V++ R++ + V Y P G++ Sbjct: 61 AVNCEHPVDGSPCNTCKTCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 + I +L+ ++++E E +A++ +A+AA+GS+RDALSL DQ IA +++ + V Sbjct: 181 DTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGEKLTYEKVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV--QL 297 LG +D ++ +++ + + ++E +G E + + + L + ++ Sbjct: 241 NLGAVDTQVFSRMLRQILQQDTAGTIKTLDEIIIQGRELGQFVTDFIWYLRNLLLISTSE 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + A RM+E + + + Y + ++ YA +R+ VE+ L++ Sbjct: 301 HPEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELSNQIKYASQKRVLVEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M L + V + + P + + + Sbjct: 361 QPVMEMNLDSLYDRVRVLEEKLKNGVTVQSLPTENYVRTRAENPEEQILKEETVKPEKAA 420 Query: 418 QL 419 Sbjct: 421 PE 422 >UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W2_EUBE2 Length = 561 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 208/353 (58%), Gaps = 6/353 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RKWRP F DV GQ+ ++T L N ++ RI HAYLF GTRG GKTS+A++ AK Sbjct: 17 MSYQALYRKWRPDNFNDVKGQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAK 76 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE + PCG C C+ I G +++IEIDAAS V++ R + + VQY+P GRF Sbjct: 77 AVNCEHPVDGNPCGECPTCKAIAAGTSMNVIEIDAASNNGVDNIRQIREEVQYSPTEGRF 136 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+ K+P+TILSRC ++ + + Sbjct: 137 KVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRYDFHRITI 196 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ-AIASGDGQVSTQAVSA 239 E I +L ++ E + E +A++ +A+AA+GS+RDALSL DQ + + V Sbjct: 197 ETIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYLGKDLKYENVLD 256 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D ++ ++ + M+L+ + +G + + + + L + +++ + Sbjct: 257 VLGAVDTAVFSKMLSTILSGDVAVCMSLMEDLIMQGRDLSQFVTDFIWYLRNLLLIKTTK 316 Query: 300 AAL-----GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 A A +++ A+ + + Y + L +L ++ +R+ Sbjct: 317 DAERIEDVIEVSADNLEDLKKDAQNVDIDTLMYYIRVLSELSNDLKFSTQKRV 369 >UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B5_LYSSC Length = 636 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 165/577 (28%), Positives = 263/577 (45%), Gaps = 23/577 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S VL RK+RPQ F +++GQ HV L N + ++ HAYLF+G RG GKTS A++ AK Sbjct: 4 SNFVLYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKL 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC++ I PCG C C+ D+IE+DAAS V+D RDL + V YAPA G+ K Sbjct: 64 LNCQSPIDYNPCGECVCCQ----DSNTDIIEMDAASNNGVDDIRDLREKVNYAPAFGKKK 119 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLKTLEEPP H+ F+LATT+P K+P TILSRC ++ + + + Sbjct: 120 VYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQD 179 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I H+++ I+ E + E +AL+L+++ A G +RDALSL DQAI+ +G+V+ Q + + Sbjct: 180 DIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVEGKVTLQDIIEIT 239 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D + +L++ + ++N E + N G E L EM+ L I + + Sbjct: 240 GAVDTRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEK 299 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + E+A ++ P I Y L + + D ++ +EMT++ + Sbjct: 300 ATLKKGHNDPQFYEIANSVGPDKIYDYMDLLNKAHSNMKFHNDVQLLMEMTIIEMINNQN 359 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + P + + + S Q A T E T++ A ++ Sbjct: 360 QSPSILQQQIDELKQFIMGGNY-----------SLQQVAVTQNATEKTNEESLANIDIKD 408 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 +QG A+ L + V + K E + Sbjct: 409 IQGMMLNDPIGFIEASEEATKKGDDWTNLVTEETVVIPSEKLTPPSKPLPPHEEHLEPPH 468 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 + E + +E P ++ E+ + D ++ + Sbjct: 469 VDDDEHLEPPSIEVENLATHNNELNP--KETVSNESEKTDSQPTSFGDFTVENIYLSERE 526 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 E L + ++ + AL Sbjct: 527 EIILE------ALASCNESHRKAFESKIEEFSAALKK 557 >UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Bacillales RepID=DPO3X_BACSU Length = 563 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 157/552 (28%), Positives = 248/552 (44%), Gaps = 10/552 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R +RPQ F DVVGQEH+ L N L + HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C+ I G D+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEH F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I ++ I++ E + E +L+++A AA+G +RDALSL DQAI+ + + + Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L +++ + N + +NE +G + L+ +M+ + + + +P Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPG 300 Query: 301 -ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ REL+ IP + L +E+ + R+ E+ +++ Sbjct: 301 LEGVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQT 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV--LAARQ 417 + PEV + + +A P + A Sbjct: 361 SHQSAADLPEVDMLMKKIQQLEQEVERLKTTGIKAAAESPKKEAPRVPKGGKSNYKAPVG 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ + + + + + + + S + +A A K Y Sbjct: 421 RIHEILKEATRPDLDLLRNSWGKLLAHLKQQNKVSHAALLNDSEPVAAGSAAFVLKFKYE 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 V ++ LE L ++ + W + E Sbjct: 481 IHCKM-------VAEDNNGVRTNLEQILESMLGKRMDLIGVPEAQWGKIREEFLEDHQQE 533 Query: 538 QVALNAWKEESD 549 N EE Sbjct: 534 NEGSNEPAEEDP 545 >UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYU5_HALNC Length = 591 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 246/642 (38%), Positives = 342/642 (53%), Gaps = 59/642 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP++FA++VGQ HVL AL N L R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MSYLVLARKWRPKSFAEMVGQGHVLQALTNALDQSRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++TPCGVC C EI+QGRFVDLIE+DAASRT V+DTRDLL+NV YAP RGRF Sbjct: 61 ALNCEHGISSTPCGVCSACVEIDQGRFVDLIEVDAASRTGVDDTRDLLENVAYAPVRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHM S+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+L+AL + Sbjct: 121 KIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLRALPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ L +L +E+IA EP AL L+A AA GS+RDALSL DQAIA G++ T VS + Sbjct: 181 SQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLLDQAIAFTGGKLDTVQVSQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D +++A+ + + +R+ AL++EA R +E LL + + +H++AM Q + Sbjct: 241 LGLSDHQIIWDMIDALYQQSADRLFALVDEALDRAVEPAILLAQFIESIHQLAMGQWIQS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++I P +QL+YQ GR+++ ++P+ R+G+EMTLLR LAF Sbjct: 301 MSAAANPPPDEL-----KSIDPQLLQLWYQIATTGRRDMAWSPNARIGLEMTLLRMLAFQ 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P S P + +V +T + +A+ Sbjct: 356 PG---------------GEASNGAVKATEPAAVHSYPSDSRSVSAAKTKPERVASSITQP 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + TKA+ + A A P+ + V + + + + Sbjct: 401 ESEPETKARLQKSAEHRVAEPMVAQTMPVQDKSDHDVPDHSGHARAQLTDLPWHEWVERI 460 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + ++ P+ A A E Sbjct: 461 PGQPGRNLADRCHINIVDGQIQLVVAPQYEVIANARARES-------------------- 500 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 L + + + + + Q + A +++ A TP Sbjct: 501 LLSQLSKLADTSKVKIIIGQNDTASDRATSEISA-------------------QAAITPA 541 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 E R Q R+S++ +Q L+ A+L EESI P Sbjct: 542 ERRNQEEINLQQQRRQSVVQHPVVQLLQEQAGAQLVEESILP 583 >UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBF2_9BACT Length = 638 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 138/535 (25%), Positives = 230/535 (42%), Gaps = 4/535 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP TF VVGQ + T L N + G++ HAYLF G RGVGKT+ AR+ AK + Sbjct: 4 YIVSARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAI 63 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE C C++CR + R ++ E+DAAS V+ + L++ + P G++K Sbjct: 64 NCEHPREDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPPQVGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDEVHMLS +FNA LKTLEEPP+HV F+LATT+ K+ TILSRC + + + V Sbjct: 124 VFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVA 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L+ + +E I +E +AL ++A A+G +RDALS+ DQA + G ++ Q V L Sbjct: 184 NTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 LD D LV+ +E +M ++ RG + ++ + + + M + Sbjct: 244 NVLDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAKDPQTL 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + + + A+ P + + + + ++R+ VE+TL++ Sbjct: 304 PLLETSDDQKAKFQAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQIGQIT 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQ--VPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P R + + S P + + + A Sbjct: 364 QPEDQDVPSAGRTPNRLKSLFQKLLAQSKLASQGAGSEPSGSSENRSSQPGASAATATAV 423 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + S A+ + + +A ++ P K Sbjct: 424 PSSGAPTAASAASNAASYSASATAAASASPEGSAAAGAATDAASPHKPRLKNIKLGGIGM 483 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + +++ E + T + W + ++ Sbjct: 484 TFSNLKKKEENQRRLHSPYDDTNEEKATITGDQNEFTQEQVEATWFSMCMRMQNK 538 >UniRef50_Q9RKL5 DNA polymerase III subunit gamma n=10 Tax=Streptomyces RepID=Q9RKL5_STRCO Length = 784 Score = 341 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 168/656 (25%), Positives = 261/656 (39%), Gaps = 65/656 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP++FA+V+GQ HV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MSSLALYRRYRPESFAEVIGQGHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T TPCG C +CR++ + +D+IEIDAAS V+D RDL + + PA Sbjct: 61 CLNCEQGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPASS 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+Y+IDE HM+S FNALLK +EEPPEH+KF+ ATT+P+K+ TI SR + + + Sbjct: 121 RYKIYIIDEAHMVSPQGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLV 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 +R L + E IA E L L+ RA GS+RD++S+ DQ +A +G V+ Sbjct: 181 PPGTLRDYLAEVCGREGIAVEEGVLPLVVRAGAGSVRDSMSVMDQLLAGAGADGVTYDMT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +++LG D S+VE+ V +G +++ G + + ++L L + ++ Sbjct: 241 TSLLGYTDGSLLDSVVESFVSGDGSAAFGVVDHVIEGGHDPRRFVTDLLERLRDLVILAA 300 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A + RM+E AR+ ++ + G E+ A R+ +E+ Sbjct: 301 VPDAAEKGLIDAPADVVERMQEQARSFGAAELSRAADIVNEGLTEMRGAHSPRLQLELIC 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAP------------------------------------ 377 R + Sbjct: 361 ARVMLPAAYGDERSVMARLDRIERGVQFSGGAGAPAMGYVPGPEAHAGAGAAAPVAAPVP 420 Query: 378 --------VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAK 429 A T P + T A A Sbjct: 421 GGGPAAARAAVRGQGAGTPPGGDPSADVAAGAGDGAGAGTGPASDAGGAPPGGGHPQAAP 480 Query: 430 KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKE 489 S A A P A A + A + W TP + Sbjct: 481 SSADVAPVPAPPSPATPSPAAAPAPAPASAPGAWPSAAPAGGGRRPGGWPTATPAGGGQP 540 Query: 490 V---------VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 AT P A+ R W + + + + Sbjct: 541 RTPAAPASGPAATAAQAPAPAAAAPAPVSPPSGASGVDPRSLWPNILEAVKNRRRFTWIL 600 Query: 541 L---NAWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 L ++ L + ++ + + G++ L +AL+ ++ V D Sbjct: 601 LSQNAQVTGFDGTSLQLGFVNAGARDNFVSSGSEDVLRQALAEQFNVQWKIDAVVD 656 >UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S561_SHEAM Length = 909 Score = 341 bits (873), Expect = 7e-92, Method: Composition-based stats. Identities = 257/615 (41%), Positives = 333/615 (54%), Gaps = 8/615 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP FA+VVGQ HVL AL N L R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITATPCG C CREI +GRFVDLIE+DAASRTKV+DTR++LDNVQY P+RGRF Sbjct: 61 GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI+ QL +L+ E + + AL LLA+AA GS+RDALSLTDQAIA G G+V V M Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L+L +A+ + + E ++ A G + + +L +L LLH+I++ Q +PA Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + A+ + P +QLYYQ LL GRK+LPYAPD G+EM+LLRA+ F Sbjct: 301 TASI--SDNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS--APQQAPTVPLPETTSQVLAARQQ 418 P P+ + A A V T+ PQ+ AP A P + A Sbjct: 359 PEKPVSRWQSGEGVSAAEALKLVAPSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGIAS 418 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA----RPVPSALEKAPAKKE 474 + + +E A V ++ + +A ++ Sbjct: 419 TLVAGTHSPVRTTEEPAVKADSSVATEEAPSGDDDVHEAESDALFAEQNLLISQAESQGF 478 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + A + P + + +A ++ +ER QL + Sbjct: 479 NPGYDAVNAGDNDLPLHDAPPLFDEMAYADYPQSYSADISETPVERGLDDGAGFQLQNEQ 538 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + V + A S + ED+ Sbjct: 539 SQSDHLQSGATGAQSKVVAESQPVNTPASAFGDDLLDAVLAAREDLLSGITSEAKEDEAK 598 Query: 595 AVRTPLEWRQAIYEE 609 + E R+ +E Sbjct: 599 KPVSSFERRRMAVQE 613 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 95/317 (29%), Gaps = 10/317 (3%) Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPT 387 +L R++L + A P + Q + V T T Sbjct: 573 LLDAVLAAREDLLSG------ITSEAKEDEAKKPVSSFERRRMAVQETSTVPVTTAPTDK 626 Query: 388 QVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAAL 447 + A T T + + + + + + P Sbjct: 627 GTQDEISLGAMSANTQTATLTQATASVSGADVAADYDRPPWEDTATPDDSSKAPELALDY 686 Query: 448 ERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK-- 505 P + E+ + + Q + A + + Sbjct: 687 AVNRESAPVNAESPDKAHPEEYTSAAPHTQTPQPLKAESQTALQAKGQTHTDEVSSSDGV 746 Query: 506 --TPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHL 563 AA W + L + V Q+A+N+ N + L L+ Q+HL Sbjct: 747 HCANHSAASPIGGDETDLRWYKLMGALEIGGRVRQLAVNSVCLAWSNPIPLVLKQDQKHL 806 Query: 564 NNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNN 623 A +L EALS G E+ + + P TPL+ R + E L+ AR ++ D Sbjct: 807 AAPVAIGQLNEALSKALGHEAEIALEVGEVPGRETPLDIRARFHRELLSDARGALNTDPA 866 Query: 624 IQTLRRFFDAELDEESI 640 + L + A D++SI Sbjct: 867 VLRLMQQAGAWFDDDSI 883 >UniRef50_C4LG88 DNA polymerase III, gamma and tau subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LG88_CORK4 Length = 990 Score = 340 bits (872), Expect = 8e-92, Method: Composition-based stats. Identities = 157/549 (28%), Positives = 240/549 (43%), Gaps = 7/549 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFADVVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++CR + G +D+ E+DAAS VED RDL D YAPA R++V Sbjct: 62 VHGPTSTPCGECESCRALAPGGPGSLDVTELDAASHRGVEDMRDLRDRAIYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR Q+ + L Sbjct: 122 FIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSRTHQYPFRLLAPND 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 +R LE I +EE + E L+ RA GS RD+LS+ DQ +A D ++ + +L Sbjct: 182 MRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGADENGITYAHAAGVL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + VE++ + + IN G + +++ + ++Q P A Sbjct: 242 GITDSALIDAAVESVANNDPAGLFTTINNVLDAGHDPRRFATDLVDRFRDLLVLQSIPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + + A+++ P + + G EL A R+ +E+ R + Sbjct: 302 FDQGLVDAPLDQRETLADEAQSLGPATLTRCAAVVSDGLNELKGATSPRLLLEIMCARMV 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + ++ PTA + + + S A S Sbjct: 362 MPGAADGIEALSQRVEALESGQPTASRSTSDNGHRVGSTSSSASEDGTRAAGSGAADNGA 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 K + S + A + Sbjct: 422 SGSDANATPPRAKGGGRIIWPRKNKKTETPTPQTSPSSEANTETSQEAKGTEHRDTGNAK 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + T A + +++ A + + + +L K + Sbjct: 482 PQETQSTSSGAPETPASPQEDAATPSQDEAAASSQAEAAPSQESVDPRTMDRETLSKYLR 541 Query: 538 QVALNAWKE 546 + AL +E Sbjct: 542 EQALQQERE 550 >UniRef50_C3PJQ2 DNA polymerase III, gamma and tau subunit n=3 Tax=Corynebacterium RepID=C3PJQ2_CORA7 Length = 868 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 166/631 (26%), Positives = 274/631 (43%), Gaps = 20/631 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCGVCD+C + G +D+ E+DAAS VED R+L D YAPA R+++ Sbjct: 62 EQGPTSTPCGVCDSCVSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S NALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMISASGANALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 ++ LE + E++ + ++ +A GS RD LS+ DQ +A +G ++ +L Sbjct: 182 MKGLLERTVASENVHVDDTVYPMVIQAGGGSPRDTLSILDQLLAGAGPDGLTYDVARPLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D+ + +EA+ + + L+++ G + +++L L + ++Q P+A Sbjct: 242 GVTDEGLLDNTIEALASQDKAGLFRLVDDVIEAGHDPRRFAIDLLDRLRDLMILQAVPSA 301 Query: 302 LGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A+ + +T+ L A R+ +E+ + Sbjct: 302 LEEGLVSAPTDRGEVLTAQAQRFSGPQLAYLAETVNERVSSLRGATSPRLLLEILCAHLI 361 Query: 358 -------AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 A ++P P+ + A + SA A Sbjct: 362 VGAAPAAAAAGQLPTAAPQGAGAQPSAPAGQPTAPAQRQQSAVASAQDPAAAAAAIIAQR 421 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + A +Q + Q + + A + + ++ + E P Sbjct: 422 RSRQAAKQEAQQQQPLQQPQQAEKAQEAVQQAQQTPAPEDSQPQVPERSAQPEAQPEPQP 481 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + + +Q E + ++ E+ PE A R W+ + + Sbjct: 482 EQPKQRQEQPERQQQEQHEQQQQEQTEQQEQAREQHPEAEQPQDPAAEIRGRWSDLRATI 541 Query: 531 SLPKLVEQ--VALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVEL 586 V + +A D+ + L + +N+ G + + L T+++ Sbjct: 542 GRRNKVAEIMLAEARVLGVRDDTLVLGHTTGALAERINSPGTNEVIVTVLQEELNRTLKV 601 Query: 587 TIVEDDNPAVR--TPLEWRQAIYEEKLAQAR 615 T V +P T E Q R Sbjct: 602 TCVIGTDPKAHGFTVTEPVQRTQWNPNQPPR 632 >UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 Tax=Chlorobiaceae RepID=B4S8V3_PROA2 Length = 617 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 161/654 (24%), Positives = 277/654 (42%), Gaps = 56/654 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQV+ARK+RP FAD+ QEH+ + N L L R+ H Y+FSG RGVGKT+ AR+ AK Sbjct: 1 MSYQVIARKYRPSKFADITAQEHITHTIQNALRLDRVGHGYIFSGLRGVGKTTAARVFAK 60 Query: 61 GLNCET--------GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 +NC+ PCG C++C + + G +++ E DAAS V+D R L +NV+ Sbjct: 61 AVNCQKMIDDPVYRQEVTEPCGECESCLDFDAGTSLNISEFDAASNNSVDDIRQLRENVR 120 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P +GR++VY+IDEVHMLS +FNA LKTLEEPP H F+ ATT+ K+P TI SRC + Sbjct: 121 YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQR 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG---- 228 F+ K + + +I+ QL+ I E + AL L+AR A+GS+RDA S+ DQ IA Sbjct: 181 FNFKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGND 240 Query: 229 -DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 + ++ Q V+ +L +DDDQ + +A+ E + +++ + G + + L +++ Sbjct: 241 AEKVIAYQGVAELLNYIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKLIE 300 Query: 288 LLHRIAMVQLSPAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 ++ + + ++ R ++ A + + L+ EL + + + Sbjct: 301 HFRNFLVLYNLRSTRLIERTESVKERYQQSAGGLSAPLVMQLIDLLMKESGELKFQFEYQ 360 Query: 347 MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 E+TLLR + ++ P V Sbjct: 361 FRFELTLLRLIELVHND---------------------------GGVAASVAGGPPVKKK 393 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 + + + + + + P R AS+ Q + Sbjct: 394 APEPDLKQPDRHPGPAGRSAPGARPAELPSPASTPEQQPPSARSASLPPSPQQSAPRNVA 453 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 P + +M + + ++ + + + + R W Sbjct: 454 SGKPGVDFS---AWQGKLMNFTRNGSRKQPVQASSSDARQSGVFEGVVEVEKFRMEWNQF 510 Query: 527 VSQLSLPKLVEQVALN----AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 + L L K + + + S + + + L++ + G Sbjct: 511 LEML-LKKRQKVLVTHLRSCELTSCSHGVLVMTCGKKFSYEELMQDAALLSKEIESFYGI 569 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 V+L I D +T + R+ ++ ++ + + F EL Sbjct: 570 AVKLQICYDAARDAQT-------REQTIFTLFRDLAETNDVMKYIIKEFGGELV 616 >UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 Length = 553 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 144/397 (36%), Positives = 229/397 (57%), Gaps = 2/397 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R+WRP+ F+DVVGQ H+ L N + R+ HAYLF GTRG GKTS+A++LAK Sbjct: 1 MSYTTLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C++I QG +D+IE+D AS+ K+ED +D+++NV+Y P G++ Sbjct: 61 AVNCLDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML++ + NA LKTLEEPP +V F+LATTDPQKLPVTILSRC +F + + Sbjct: 121 KVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++L I+NEE I + R+L L++R +G++RDALS+ DQAI+ G G+V ++ M Sbjct: 181 SEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--LS 298 LG + ++ L ++++E N E M +I++ G + + EM+ L + MV+ + Sbjct: 241 LGLVTNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNN 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + +++ A+ I +I + ++ + R+ +E+ +++ Sbjct: 301 PEEILDISEENIELLKKQAQKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMCK 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 M + Sbjct: 361 IEYDTSKEIMLSRLNKLEEAFKQGGMKIFHEKIPSKE 397 >UniRef50_Q1ATA7 DNA polymerase III, subunits gamma and tau n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATA7_RUBXD Length = 567 Score = 340 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 153/567 (26%), Positives = 239/567 (42%), Gaps = 12/567 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + L R+WRP+TF ++ GQE V+ L + GR+ HAYLFSG RG GKTS A++LA Sbjct: 1 MKHATLYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNC G T PCG C++CR I G +D+IE+DAAS +++ R+L D V APA GR Sbjct: 61 GLNCAQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVNLAPAAGRA 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLK LEEPPEHV F+LATT+ K+ TI+SRC F + V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + +L I E I E AL +ARA+ GS RDA + DQ + +G+V+ V + Sbjct: 181 GTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVREL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+ + +A+ E + +++ ++ G + E++ L + ++ +P Sbjct: 241 LGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQFAAELISHLRVLMLLPHAPE 300 Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A + E AR IP + + L + D ++ +E+ L+ Sbjct: 301 AALAEAGPEERPALEEQARRIPTGETVRMIEALGETSGRIRRGGDPKLELELCFLKLARD 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L ++ P + P + PE A Sbjct: 361 YTEPSLEGLVRRVEALEKRLEEGSAPPRENPAKES-----------PEQPPDGRAGEAPP 409 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 ++ + + + + + + RV+ P + Sbjct: 410 RQEEPPRTGAELDWDSVLQELRARRQVPVAALYESARVEGCEDGLVKISFPEELAPLMKS 469 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A P + + L E A A + ++ Sbjct: 470 AGEPKRVEPLRDVLEERLGFRPRVELKLSGEAPPRPPAAYPPSPEPARREGEDAPRAQER 529 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNR 566 + + + L R Sbjct: 530 PHPPREGPEGEEDVIRSQDEVFELARR 556 >UniRef50_Q3SLE5 DNA polymerase subunits gamma and tau n=5 Tax=Betaproteobacteria RepID=Q3SLE5_THIDA Length = 581 Score = 340 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 239/639 (37%), Positives = 327/639 (51%), Gaps = 73/639 (11%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LARKWRP+ FAD+ GQEHV+ AL+N L+ GR+HHAYL +GTRGVGKT++AR+LAK LNC Sbjct: 14 ALARKWRPRAFADLRGQEHVVQALSNALTQGRLHHAYLLTGTRGVGKTTLARILAKCLNC 73 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E+G++ATPCG C C +I+ GRFVDL+E+DAAS T V++ R++LDN QYAP GR+KVY+ Sbjct: 74 ESGVSATPCGTCSACTQIDAGRFVDLLELDAASNTGVDNMREVLDNAQYAPTVGRYKVYI 133 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FN++LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + + Sbjct: 134 IDEVHMLSKPAFNSMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKPMTPALVA 193 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L +L +E + EP AL LLARAA GS+RDALSLTDQAIA G G++ AV AMLGT+ Sbjct: 194 GHLGDVLAQERVDAEPAALNLLARAAAGSMRDALSLTDQAIAYGGGRIEAAAVEAMLGTV 253 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 D L++A+ +G+ +M A RGI ++A L ++ LL ++A+V +P A+ + Sbjct: 254 RRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDLGNLLTQLALVLHAPGAVED 313 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 A R R A + +QLYYQ L GR++LPYAPD G MTLLR LAF P Sbjct: 314 --GADAERTRAAAEKLDAETVQLYYQIALNGRRDLPYAPDEFSGFCMTLLRMLAFAPATD 371 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 + P + A + P AA LQ+ + Sbjct: 372 --------------PTPRSPGGGRAPVASADSTPAAAPLAAPAPARVPAAAPAPLQQPEA 417 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 A + +EP AA A AA A A A Sbjct: 418 ARQVASAEPLAAEDADSPRAAAAPPDAPFVAAEPAPAAQWDWLAVVAGLRLGGMAKMLAD 477 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 + + Sbjct: 478 HCELVAQTGD------------------------------------------------SV 489 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQ 604 A L + + ++K AL ++T +TP + R Sbjct: 490 TLRVGEAHKHLLDRAYQDRLTGALREKYGPAL--------QITFEVGSAAD-QTPQQVRT 540 Query: 605 AIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I E + A+A +I AD ++ L F +++ +I+P+ Sbjct: 541 RIKEARQAEAIAAIEADPFVRELVEQFGGQVEASTIQPL 579 >UniRef50_D1BUQ2 DNA polymerase III, subunits gamma and tau n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUQ2_XYLCX Length = 926 Score = 340 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 166/678 (24%), Positives = 263/678 (38%), Gaps = 70/678 (10%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPETFAEVIGQEHVTGPLMQALRSGRVNHAYLFSGPRGCGKTTSARILARTLNC 63 Query: 65 ----ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 TPCGVC +C E+ +G +D++EIDAAS V+D RDL + +APAR Sbjct: 64 HANTPQTPLDTPCGVCPSCVELARGGSGSLDVVEIDAASHGGVDDARDLRERATFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE HM+S FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + Sbjct: 124 RYKIFIIDEAHMVSPAGFNALLKIVEEPPPHIKFVFATTEPDKVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 + + LE + E + + L+ RA GS+RD+LS+ DQ IA + G V Sbjct: 184 PPDVLAPYLESLCASEGVTLGGGVVPLVVRAGGGSVRDSLSVLDQLIAGASTGVVDYDLA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG +V+A+ +G + ++++ A G + + ++L L + ++ + Sbjct: 244 VGLLGYTHSSLLDDVVDALAARDGASLFRVVDQLIASGHAPQRFVDDLLERLRDLIVIAV 303 Query: 298 SPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 S A G A RM A + ++ + E+ A R+ +E+ Sbjct: 304 SGDAAGAVLRGLPADQLDRMAAQASRLGVAELSRAADLVNAALTEMTGATSPRLHLELLC 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFA------------------------------------- 376 R L + Sbjct: 364 ARLLLPGADEGAAGLAARIERLERGGLVAAASVAAPVRSGRQADGGAPTAGADVGGLRGA 423 Query: 377 ------------PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 P A + ++ P P +S V A Q V Sbjct: 424 AAVRAAMQASRRPTAEVQGDATEGAGARTVASAPAQDPAPAPGRSSVVAAPPQGDSGVGH 483 Query: 425 ATKAKKS---------EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 A + S +PAA + A V+DR + + Sbjct: 484 AVEPVASGPAAETVGGDPAAGPAVDAEPDVEPVPAAPVSDRPVDDELLHDEPVPDEPLDD 543 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 E +A E +A I R W + + P+ Sbjct: 544 QPLDGPPVAAAPAEPHVGAAPGARAEEPPAPDPASAGGITTEIVRRRWPEVLGSIQNPRA 603 Query: 536 VEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + +A D + L + G + +++A+ G V + IV Sbjct: 604 QAFLGEHAQVLSLEDGVLTLGFTPAVVTQARMGRPETISDAVYETLGVQVRVEIVAGSGG 663 Query: 595 AVRTPLEWRQAIYEEKLA 612 + ++ Sbjct: 664 PRPRDAAPTRRTQDDAAE 681 >UniRef50_A0L8F3 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8F3_MAGSM Length = 605 Score = 340 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 196/642 (30%), Positives = 294/642 (45%), Gaps = 42/642 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VLARKWRP+ F D++GQEH + AL + L GRI HA+LF+G RG+GKT+++RLLA Sbjct: 6 SYVVLARKWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMC 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC TG+TA PCG CD+CR I +G D+ E+DAASRTKVE R+LLD V Y P+ R+K Sbjct: 66 LNCGTGVTANPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS SFNALLKTLEEPP HVKF+ ATT+ +K+ TILSRC ++ L+ LD + Sbjct: 126 IYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDRD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L H+L+ E IA++ L ++ AA+GS+RDALSL DQAIA G G+V VS +L Sbjct: 186 GLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLLDQAIAHGGGRVDYTHVSGLL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D ++L + ++ G+E LL ++L + H++ Sbjct: 246 GLTDRQAVVALFADLCRGRLLEMLERAAYFHRDGVEPVVLLNDLLDITHQVTRELAVGVG 305 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + ++E+ + +Q+ YQ LL GR++L A R +EM LLRA P Sbjct: 306 DAAQALSEHEGLKEVWPKLGLEHLQMLYQVLLRGREDLQMARLPRQALEMLLLRAAHLRP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 PL + Q Q A ++ + ++ Sbjct: 366 VPPLKQLVESLQR--------QAGVEPGERQASPAVKKFDAPGVGQSEVAPTVHFAPKSA 417 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 A +A ++ + +P A + V A P + ++ Sbjct: 418 ALEAPQAVQAPQVKRAKKQPTVLAPEPQPPVVPPDWPAVPPLQEEPTVVSPTPPATVESW 477 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 +++ + A K + + A K+ + + Sbjct: 478 EKLIEAARIKFPLLAQKMESHLSLLSYTGGSGPHDPPCMEVMIAHAFAGEPSKVHKNLM- 536 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 D V L L + H+ D T E Sbjct: 537 -------DLLVSLKLPNGVVHIRKS------------------------SDGTRPDTEAE 565 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 ++ + + D IQ + R F+A++ + P+ Sbjct: 566 KQKKAQDAYQNALTREVADDPLIQEIERRFEAKIIH--VEPV 605 >UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZS6_UNCTG Length = 531 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 140/409 (34%), Positives = 222/409 (54%), Gaps = 3/409 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F +VVGQEH+ L N +S RI HAYLFSG RG GKT++AR+LAK Sbjct: 1 MAYLVLARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G T PCGVC+NC EI + VD++EID AS ++D R L +NV+++ A ++ Sbjct: 61 ALNCKNGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDE H ++ +FNALLKTLEEPP HV F++ATT+ K+P+TILSRC ++ K + Sbjct: 121 KIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISG 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ ++ I EE + AL ++ A+ GS+RDALSL DQA++S G+++ + + Sbjct: 181 AEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L D +S+ + + + + ++ ++ E +G ++ L + + ++P Sbjct: 241 LGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHLRNVMIYSINP- 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ + + + L +E+ + R+ +EM LL+ Sbjct: 300 AIAEISSEDKKIFDVQKSLFTVSRYVRMNNLLSKALEEMRWHDQPRILLEMYLLKMSE-- 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 P + E T + QP + + + Sbjct: 358 PYYDVGELINKITDLERNFRTCGNSQLPFEKQPAVRSESCAAGKVFDPA 406 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 154/479 (32%), Positives = 230/479 (48%), Gaps = 3/479 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRPQ+F ++VGQEHV L N ++ RI HAYLF G RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NCR I G D++EIDAAS V++ R+L + V+YAP G + Sbjct: 61 ALNCSGHGPVRPCNDCLNCRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGNY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP +V F+LATT+ K+P TILSRC +F + L V Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFDFRRLGV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +LE I IA L +AR AEG +RDAL + DQ ++ ++ + V+A+ Sbjct: 181 NEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGDVTAI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + D+ + + + E V+ +N+ RG E L ++LG +++ P Sbjct: 241 LGAVADEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTRDLLGHYRDRLILRTVPG 300 Query: 301 ALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A I +++E +D+Q L ++ + R+ +E+ +R Sbjct: 301 AADLVDMPDDIAAKVKETGHVYSVSDLQACIALLSQAENDMKWTTHPRILLEVAFVRIAC 360 Query: 359 FH-PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + P P A A M + + A + + + R Sbjct: 361 REWGKGAGNAPASPTSGGAGGAADMEMRALRRRVESLEAKVREMQQAVENQGAASGEKRP 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 L A ++ AA Q + A ++ + Sbjct: 421 SLDSEALRRPQPAMPSATISKLDEETKAAARLAEGPIHIDQVNACWPNVLAAALERISP 479 >UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX1_HAHCH Length = 735 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 240/620 (38%), Positives = 316/620 (50%), Gaps = 3/620 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP FA++ GQEHVL AL N L+ R+HHAYLF+GTRGVGKT++AR+ AK Sbjct: 1 MAYQVLARKWRPGNFAEMAGQEHVLKALTNALNQDRLHHAYLFTGTRGVGKTTVARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PCG C CREI +GRFVDLIEIDAASRTKVED R+LLDNVQYAP R R+ Sbjct: 61 CLNCEQGVSAIPCGECGVCREIAEGRFVDLIEIDAASRTKVEDMRELLDNVQYAPTRSRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS SFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLSP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I L H+L E++ E AL LARAAEGS+RDA+SLTDQAIA GDG++ + V M Sbjct: 181 QRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSLTDQAIAFGDGKLEAKDVIEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ + L+ + + ++A +N A ++ +L + LLHR+A+ Q P Sbjct: 241 LGTIEKHVVIDLLRTIAAQDCAAMLAQVNHMAQFAPDYAYVLQALAELLHRVAVEQAVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + N ++ ELA+T+ D QLYYQ L+GRK+L APD R G EM LLR +AF Sbjct: 301 GVDNSFGDQ-QQVSELAQTLTAEDTQLYYQIALMGRKDLALAPDPRTGFEMALLRMIAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + + + A + P Q+ A + Sbjct: 360 PNIKSARQIQAPSAASSAASADDDKESAQPGPSQTETAVAAQPAPAVEATPEPRQEIAAP 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + + P + + Q + R Sbjct: 420 QPEPPQQVAEKRDTPSPQEPPRQGLSQQGPQKQEPSNQGEAPVIDAAPVTPAQPIERPPP 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + V + AE D + + E+ Sbjct: 480 GHSEAEPPPVDDYDAYFADDPGPSDADYGFSGYPAETGYPDDGSHAAPVANPQPKEERPQ 539 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR--T 598 A E + + G EA S+ V +PA Sbjct: 540 AAAPAREPQGREAIAPPPKSVTESVPGLHPGPGEAGSVNTTPPVVAANSVKKSPAGPLTP 599 Query: 599 PLEWRQAIYEEKLAQARESI 618 PLE + A + + Sbjct: 600 PLEGEPTMQGMVWKDAVKRL 619 >UniRef50_Q1NUY3 DNA-directed DNA polymerase n=5 Tax=Deltaproteobacteria RepID=Q1NUY3_9DELT Length = 706 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 166/705 (23%), Positives = 277/705 (39%), Gaps = 76/705 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRP+TFA+VVGQ V+ L N L L R+ HA LF+G RGVGKT++ARL+AK Sbjct: 1 MSYLVLARKWRPRTFAEVVGQRPVVRTLQNALRLQRVAHAMLFAGVRGVGKTTLARLMAK 60 Query: 61 GLNCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC+ + PC C +C+EI G VDL EID AS +++ R+L +N+++ P Sbjct: 61 ALNCQEPEPASRPCNQCKSCQEINAGAAVDLHEIDGASNRGIQEIRELKENIRFLPVSAS 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+ +IDEVHML+ +FNALLKTLEEPP HV F+ ATT+ K+P+TILSRC ++ L + Sbjct: 121 YKIVIIDEVHMLTTEAFNALLKTLEEPPAHVYFMFATTELHKIPITILSRCQRYELTRVA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ + E + AL +++R A+GS+RD LSL DQ + DG + V Sbjct: 181 YDELLAFFRQVAAREEVTISEAALAMISREADGSVRDGLSLLDQVFSFADGGIDDDDVRQ 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG +D L A++ R + + + G+ + ++L + + + + Sbjct: 241 LLGLVDRRVFAQLARALLAGELGRALEIFDRGQRAGMNLKRFAADLLDYFRNLVVCRATA 300 Query: 300 AALGNDMAAIEL--RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A + + E+A P + + LL G +E+ YA ++ +EMT++RA+ Sbjct: 301 GARQLLELGEQELVELEEIAAAHSPETLLYCFNLLLKGIEEMQYASRPKLVLEMTMVRAV 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT------SQ 411 +P E P P+P + + +T + Sbjct: 361 EAGQIVPTAEALGRLDQLLAGLPAEEQIAVAATPRPTARGEGKAAPGGGDTAVEAYQKPE 420 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 A + + A P + + + R + Sbjct: 421 EAAVTAGIGEPEPALAVSDHGAPHLAAIEPAHVPMYASPSRLPQDAVPRDRLPRGSRDQL 480 Query: 472 KKEAYRWKATTPVMQ--------------------------------------------- 486 P + Sbjct: 481 PLAGVATDPGEPEPELSGADTGQAPAAAGGPEPPPAAPASPKSPATSATPTEPPPEPTPE 540 Query: 487 -----QKEVVATPKALKKALEHEKTPELAAKLAAEAIERD------PWAAQVSQLSLPK- 534 + A ++ + + A + R+ W V + K Sbjct: 541 PTPKPTPKPPPESPAGQQTGDEAPAAGVDKAAAVKGRSREGRDLRRQWDDFVRYVRQRKI 600 Query: 535 -LVEQVALNAWKEESDNAVCLHLRSSQR--HLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + + + A E + + L L + L E +++ + Sbjct: 601 WMASVLEMVAGIREENGELRLRYDDPADCKLLEETENSRLLTEFAQDFFQRELKVRLRIR 660 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + E + R ++ D +Q + F+ E+ Sbjct: 661 GGDSKEVAA-------NELPREERRALAGDPLVQAVTEIFNGEVV 698 >UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus RepID=A8W2Q1_9BACI Length = 600 Score = 338 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 171/640 (26%), Positives = 279/640 (43%), Gaps = 46/640 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WRPQ DVVGQEH+ L N L ++ HAYLFSG RG GKTS A+++AK Sbjct: 1 MAYQALYRVWRPQVLKDVVGQEHITRTLRNALLQQKLSHAYLFSGPRGTGKTSAAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C C I+ G VD+IEIDAAS V++ RD+ D V++AP+ + Sbjct: 61 AVNCEQAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFAPSGASY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P+TI+SRC +F K + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQRFDFKRITA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++E I+ + +A +P AL ++ARA+EG +RDALSL DQAI+ D V+ V ++ Sbjct: 181 HTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADTSVTLDDVLSI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D ++EA+++ + I+ + G + + + + L + MVQ +PA Sbjct: 241 IGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFMEDFIFLTRDLLMVQAAPA 300 Query: 301 ALGNDMAAIE---LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ + R LA + + + L ++++ +A + +EM +++A Sbjct: 301 --LDESGDRKLGDQRFEILASKASQSWLFALMEKLNHFQQQMKWASHPAVFLEMFVVQAC 358 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R P + + Q + A P + SQ A + Sbjct: 359 QMPSREPEKAGLPEEVRQQISTLEHKLADLERRLQQAPSQAPAGRPDQPASPSQPQAPVR 418 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + Q A+ + A Q + A + Sbjct: 419 K--QPQAASTGASRANMQRVKGVLNEATKAHLKAIHQKWAQIQDTVKQQNVAAS------ 470 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A + + L E + + D + + + + Sbjct: 471 --AWLNDCKPVVASSGHYVLAFRNEMHR-----------GMVDDKFRDLIEGVVSQVMDT 517 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 Q+ + E+ V Q+ +A G+ + + + Sbjct: 518 QLVMYTLLEQDWEEVKAAFVKEQKK----------KQASQPADGN--QESEDVPQDGDSE 565 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + EE +A + + F ++L Sbjct: 566 AAGQAVEDEPEEDQGEA--------VVDEAIKMFGSDLVR 597 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 127/345 (36%), Positives = 199/345 (57%), Gaps = 2/345 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RK+RP F +VVGQ H++ L N + RI HAYLF G RG GKTSIA++ AK Sbjct: 1 MAYQALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PCGVC+NC+ G D+IEIDAAS V++ R+L+D V+YAP +G++ Sbjct: 61 TLNCTNSQDA-PCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHM++ +FNALLKT+EEPP HV F+ ATT+P K+ TI+SRC +F + V Sbjct: 120 KIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSV 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+++L + E I + L L+A+ A+G +RDALS+ DQ +A + + + Sbjct: 180 NDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L ++ + + +R + I + + G++ + L + + +L ++ S Sbjct: 240 YGVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYS-E 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + +R+ ++ P + L+ + YA + Sbjct: 299 NSTLVSDMNKDMIRKYFKSAPIHFRIQCMEELMDTYNKYTYASNA 343 >UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, putative n=2 Tax=Rhodothermaceae RepID=Q2RZH6_SALRD Length = 728 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 163/539 (30%), Positives = 242/539 (44%), Gaps = 8/539 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V ARK+RP F +VV QEHV L N + + R+ HAYLFSG RGVGKT+ AR+LAK + Sbjct: 6 YLVTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAI 65 Query: 63 NCETG-----ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NCET A PC CD+C E GR +++ E+DAAS KV+D R+L + V+ P Sbjct: 66 NCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQG 125 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + KVY++DEVHMLS+ +FNALLKTLEEPP H F+ ATT+P K+ TILSRC +F + Sbjct: 126 DQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRR 185 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + V +I +L I E + + +L LLAR G+LRDALS DQA++ + + Sbjct: 186 IPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGEL 245 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ- 296 + LG +D D L + + + ++ L+ G + + +LV + L + + Sbjct: 246 TQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVAHS 305 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L AL + R + A D+ ++ +P R+ +E TLL+ Sbjct: 306 LGGEALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKM 365 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L +A + P VP +A + A P P + + Sbjct: 366 AQLRRSADLRAVLEKIDRLEQMAEDGDL-PEAVPGDGVTASETASAPPAPPESEKSENTE 424 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A+ +EP A T ++ P + APA Sbjct: 425 TGGAAGREASPDAAAEPRPGYGPESTAPPNAPEDAPSTKDAESDPKNETPDGAPADVVDE 484 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 T + + +A E P+ A+ + E A Sbjct: 485 AGNETLSASDEDDAPNDDAPNDEAPNDE-APDADAQGPDDGDEPPSSDAPADGTDASGA 542 >UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15RT3_PSEA6 Length = 914 Score = 337 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 237/598 (39%), Positives = 328/598 (54%), Gaps = 15/598 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F+++VGQEHV+ A++N L R+HHAYLF+GTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKWRPNNFSELVGQEHVVAAISNALDNDRLHHAYLFTGTRGVGKTTIARIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ + PCG C C EIEQG FVDL+EIDAASRTKVEDTR+LLDNVQY P+RGR+ Sbjct: 61 SLNCELGMGSKPCGKCSTCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPP HVKFLLATTDPQKLP+TILSRCLQF+LKAL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL+H+ +E + + P AL +ARAA+GS+RDALSL+DQAIA G+G VS V+ M Sbjct: 181 AQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAIAQGNGNVSLSIVTDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D Q L L+ A++ E V L++ + + +++ +L E++ LLH++A+ Q P Sbjct: 241 LGLMDKTQVLKLLNAVLNKQNESVFELVDFMSEQAVDYSQVLNELMSLLHQVALTQFVPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + + +LA+ P IQL YQ L G++++P+A D R G+EMTLLR LAF Sbjct: 301 ACKLETISARA-IYQLAKNALPEHIQLLYQIALQGKRDMPFAADARTGLEMTLLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQ-----------VPPQPQSAPQQAPTVPLPETT 409 P E AP++ + ++ + + Sbjct: 360 PVQVNTSVEELVAMTPSSAPSSGPSSAPLPMRDKHDLVTPTDDTPVESKETVVAAMAQAE 419 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A A K P+ A+ + N+ + + Q V + + Sbjct: 420 EAPQAPIATEIDNTQRVAAPKDAPSTASDSTSNNDFTNDSDFTARQNTQPLEVMGSKSER 479 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 +++ T E+ + I ++ Q Sbjct: 480 ADNAATQNQVEGAAAVEKTLADETSAQPFDDDEYHSAQMQDMEAQQAGILQEAEYFIQPQ 539 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 P + + +A SQ + ++KL +A + + + Sbjct: 540 TQQPHDTNTAVDHQQEVHQQDASK---PQSQSTESLLALRRKLTQATEDEQENVPSVK 594 Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 88/272 (32%), Gaps = 2/272 (0%) Query: 371 PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKK 430 S +P T P A + + + Sbjct: 644 EPSSPEQYSPEQATPYTYSAQADAPYPNDADVPNANQAELGEAPPWATDDANNQTSLNEF 703 Query: 431 SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEV 490 ++ + + + + A + + Sbjct: 704 NDINDINEVTVNEVTGGDVSVNELSHEALALDEVTVPVDAQEDIAENQQEIENTVFDPTA 763 Query: 491 VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN 550 + + + A + D W+A ++Q+ + L +Q+AL++ + + Sbjct: 764 HLAQDLECEVDYEVPAFLESGEKVTIAPQLDKWSALITQMQVAALTKQLALHSEFTQDGD 823 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 V L+L ++ HLN A+++L ALS + + L + D TP +Q+I + Sbjct: 824 KVVLNLVQTKEHLNTDSAKEQLQRALSDVLQQQITLEVHVGDAIN--TPFALQQSINRVR 881 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A++ + + +I + F+A++ +SI+ Sbjct: 882 FEYAKQVVETNESICMFKDMFNAQVLNDSIKA 913 >UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1W4_ABIDE Length = 522 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 219/380 (57%), Gaps = 3/380 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RK+RP+ F +V GQ+ V+T L N + +I HAY+FSGTRG GKTS+A++ AK Sbjct: 1 MSYTALYRKFRPKGFDEVKGQDSVVTVLKNQIKHEKIGHAYMFSGTRGTGKTSVAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE +PCGVC+ C++I +GR +D+IEIDAA+ V++ R++++ V+Y+P ++ Sbjct: 61 AVNCENTKDGSPCGVCETCKKIGEGRTLDVIEIDAATNNGVDNMREVIEEVKYSPTDTKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPE+ F+LATT+P K+ TI SRC ++ + + + Sbjct: 121 KVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQKYDFRRISI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 E I +L+ ++++E +E AL+ +AR +GS+RDALSL DQ +A D +++ V Sbjct: 181 ETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFSFDEKLTYDKVLN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--L 297 +LG++D D L A+ + M + E + GI+ ++ + +++ Sbjct: 241 VLGSVDTDLFNKLYIAIKRGDVTTCMDIAEEISMNGIDIGQFTLDFTWYFRNLLLLRVSK 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A ++E+A+ D+ Y + ++ Y+ +R +E+ L++ Sbjct: 301 AAADRIEISTDKLAELKEVAKIGEENDLYRYIRIFSKLSADIKYSTSKRAELEIALIKLC 360 Query: 358 AFHPRMPLPEPEVPRQSFAP 377 Sbjct: 361 RPEMEEDRESLIARINKLEE 380 >UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8CMY6_SHEPW Length = 946 Score = 336 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 266/627 (42%), Positives = 362/627 (57%), Gaps = 14/627 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLHALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGR+ Sbjct: 61 GLNCEQGVTATPCGQCSACVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L E + E AL LLA+AA GS+RDALSLTDQAIA G GQV + V M Sbjct: 181 DEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSLTDQAIAFGAGQVKLELVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q ++L+EA+ +A+ +M + + G E E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKQVIALLEALAKADVMALMQVSAGVLSFGAEPEEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A+ + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+ F Sbjct: 301 AAQMSL--YSEQIKAFAQQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVTFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + +P A+ P P + + A + +V AA + Sbjct: 359 PEQPVSKWVTD-------SPAAIAIPQAAAPAITQSSESAKPQAIVAPQQEVKAAPVEEA 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + S PV L+ + + PV S LE ++ +A Sbjct: 412 AEKKTVLTANSVNDKQPNQDPVAADTLKPELAAIEASVGAPVSSTLESMNSEMAVILSQA 471 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW---AAQVSQLSLPKLVE 537 + + T + + E P + A+ A+ D ++ QL P ++ Sbjct: 472 QSQGFSSSDTSETKDISTEQTQSEVKPPVKAQQPADTSTSDDATEISSIAEQLPKPSDID 531 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 N + +V L + Q+ +++ A S G+ D + A+ Sbjct: 532 SNLNNTVV--DNASVKLEAQKGQQVQDSQFDGDDDLAAYSQYAGAYDTDIDDSDFDFALE 589 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNI 624 Q I + + A+ + I+ + + Sbjct: 590 QSEPLAQDITDRRQNAAQSAAISTSLV 616 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 99/267 (37%), Gaps = 2/267 (0%) Query: 376 APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 + + +P + P + P S + + Q KA ++ Sbjct: 652 EEDPQESSAKKSVAERKPFAPPVRKPKAEPEIDNSDPATVGAKSDQAQENIKAANADNQE 711 Query: 436 ATRARPVNNAALERLASV--TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 T RP + + D + A + A + + Q K V + Sbjct: 712 ETFDRPPWEEPHAQDPTPRFDDVAVEKEANKAADNAAVEPKRTPQPQNQTEQQSKPPVTS 771 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 + P L + W ++ L + V Q+A+N+ + + + Sbjct: 772 LDSTSVQDVELNLPALPSGEITGNDIDLKWYRFMADLEVGGRVRQLAVNSVCHQFEQPLS 831 Query: 554 LHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQ 613 L L+ Q+HL A ++L EA+S G E+ I + + TPLE R+ ++E LAQ Sbjct: 832 LLLKPDQKHLGADVAIKQLEEAMSKALGEPSEVRISVGVDSSRETPLEVRRRFHKEILAQ 891 Query: 614 ARESIIADNNIQTLRRFFDAELDEESI 640 A +I D+N++ L A+L +S+ Sbjct: 892 AHHGMITDDNVRWLSENMGAQLTPDSL 918 >UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and tau n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4B Length = 522 Score = 336 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 134/412 (32%), Positives = 220/412 (53%), Gaps = 3/412 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RPQ F+D+VGQEH+ L N + L RI HAYLF+G+RG GKT+ A++ A+ + Sbjct: 2 YLTLYRKYRPQKFSDMVGQEHITKTLKNQIKLNRIAHAYLFTGSRGTGKTTAAKIFARAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+ + PC C C+EI +G FV++IE+DAAS V+D R + + V Y PA G +KV Sbjct: 62 NCKNSVDGKPCEKCVVCKEIAEGAFVNIIELDAASHNGVDDIRQINEEVLYTPAVGVYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNA+LKTLEEPP +V F+LATTDPQK+P T+LSRC +F + + Sbjct: 122 YIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQRFDFRRISTSD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 I L + E+I E A++L+AR A+G +RDALS+ +Q I+ D +++ V ++ Sbjct: 182 ICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYIDEKITHSKVLKLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--P 299 G +D+ ++ A++E + + +A+ NE +G + ++L + + + + Sbjct: 242 GAVDNALLFEMMNAVIEMDAAKAIAVCNEINQQGRNIKQFAKDLLMHTRNLLIAKTTEQK 301 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + + A + I Y + E+ + R+ +E+ +++ Sbjct: 302 TEILDYTQEHVRELTQQANELAIETIFRYIKNFTELDMEMKTSTFPRITLEVAVIKLCTP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 + S +V + + T+ + Sbjct: 362 EVDLSKDSVLDRMLSIEKQLEEVKKNGIKVVEKASEEAVVTEIERVKATSEE 413 >UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VYC4_MARMS Length = 752 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 236/611 (38%), Positives = 327/611 (53%), Gaps = 2/611 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFLEMAGQDHVLQALVNALRQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG CD+CREI +GRFVDLIE+DAASRTKVEDTR+LL+NVQYAP RGR Sbjct: 61 CLNCETNGISPEPCGTCDSCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ L+ +L E + + AL + +AA GS+RDALSLTDQAIA G+G +S V+A Sbjct: 181 PQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIAFGNGTISESGVTA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q L L+E++ N +V+ I + A ++ A+ +L +LHR+A+ Q P Sbjct: 241 MLGLVNQAQVLDLLESVASKNAAQVLTRIEQLADYQPDFTAICGSLLDVLHRVAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + R++ +A ++ +IQ+ YQ+LLIGR++L A R G EM +LR +AF Sbjct: 301 GALMDQLGD-LARIQAIAASVSSEEIQIMYQSLLIGRRDLHLAHSARAGFEMLMLRLIAF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+ +T + + + T V + Sbjct: 360 RPAPPMVVSHNAPPVMNVQTEAVPITSPDESMHQTAESEYPLQPMTEKKTPVVKQEEPVV 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + +A P + E + A+E A+ E + Sbjct: 420 IKPAEQMVEPEPVQESAQPTAPAEHPPWEYAPEPAAAEEYVVEQVAVESESAQSEVIQHD 479 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 V + + + + L E+ + A + +V Sbjct: 480 IEEDVEITAVENSELEESLDVEQQTVSIALEPTARQESDIQVETANKPEHEPKSFVVADD 539 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + + +R + + A L G+ + V +++ T Sbjct: 540 RFTEELLDESDEDEDEQEAEERAIADIVDPFNPAADLVDALGAEPIESSVVEESTEPDTR 599 Query: 600 LEWRQAIYEEK 610 L + Sbjct: 600 LSKVPDTIAQP 610 >UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=Peptococcaceae RepID=A5D6B1_PELTS Length = 558 Score = 335 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 154/497 (30%), Positives = 240/497 (48%), Gaps = 3/497 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+TF +++GQEH+ L N + GR+ HAY+F G RG GKT+ A++LAK Sbjct: 1 MTYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC A PC C++CR + +G VD+IEIDAAS +++ RDL + +++APA GR+ Sbjct: 61 ALNCTGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDEVHML+ +FNALLKTLEEPP H +LATT+P ++P+TILSRC +F + + Sbjct: 121 RVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ + + E AL+L+ARAAEG LRDALS+ DQA A G +V+ V + Sbjct: 181 ADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ D + + R + L++E A G + E+ G L + + ++SP Sbjct: 241 LGTVRTDALDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYLRALLLEKISPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + RM A + + + +++ ++ + +E+ L++A Sbjct: 301 TPAGEAWGDTARMAAQAAEFSEAGLVRAVEIIARAEQDMKWSAMPGIVLELALVKACRPE 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 LP V P +A + V + Sbjct: 361 AGWDLPSLAARVAGLEEKIKLLAPAEAPVKRPPAAAKAASAPRQAAPAPVPVAVPALPQK 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +VQ A A + A E L + + + + + AP + Sbjct: 421 QVQEAG---GPGGPAEAVSLEQVREAWEDLMNAMRKERLPLYTNYSKAAPLAVKGRVLVV 477 Query: 481 TTPVMQQKEVVATPKAL 497 P + Sbjct: 478 GFPEGEALFKEIAEMPE 494 >UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5D8_LARHH Length = 769 Score = 335 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 239/625 (38%), Positives = 322/625 (51%), Gaps = 17/625 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ FAD+VGQEHV+ AL+N L+ R+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPRRFADLVGQEHVVRALSNALAGQRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+ A PCG C CR+I+ GRFVDL+EIDAAS T +++ R++++N QYAP GR+ Sbjct: 61 SLNCERGVGAEPCGECAACRQIDAGRFVDLLEIDAASNTGIDNIREVIENAQYAPTAGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFALRNMTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I E AL LLARAA GS+RDALSL DQAIA G+G V V AM Sbjct: 181 QQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLLDQAIAYGEGVVREDGVRAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D +L+ A+ + +G V+ E AARGI ++A L E+ L ++IA++Q P Sbjct: 241 LGAVDRRYLFTLLAALADGDGAAVLDEARELAARGIGFDAALEELAQLFYQIALMQAVPQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D + LA ++ P D+QLYYQ + G ++LP APD ++G M LLR LAFH Sbjct: 301 AIADDEPER-EALAALAGSMAPEDVQLYYQMAVQGGRDLPLAPDEQLGFNMALLRMLAFH 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P+ P P +A +AP T + S AAR + Sbjct: 360 PQTGSPALAAPAAVAGGIASPPQAPAGMTAGARPAAPAGTATDDDDDPASGRGAARAAIA 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + ++ A A+ P + + A Sbjct: 420 KALRRSPVERPVVATRQAVPADTPVESGLPATTGTS-----RPGDTGQPASVPAGTTAPA 474 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P + P + P A A P Sbjct: 475 PVPASASGLDSSLPWDDEVHDSLSAAPVEAVPAAGLGQASLPHEDAYDCPEREPAASTPE 534 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQ----QKLAEALSMLKGSTVELTIVEDDNPAV 596 + A + AV L ++ + A + G+ E V + Sbjct: 535 VPAGASPAGEAVRLASGPAEALPWDDETAHGLNADEQAAHDDMFGAPAEPASVPVSSSGQ 594 Query: 597 -------RTPLEWRQAIYEEKLAQA 614 TP +A A A Sbjct: 595 AVTTAPDVTPPADVRAPDVMPDAVA 619 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 81/256 (31%), Gaps = 4/256 (1%) Query: 391 PQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL 450 S + A A + + Sbjct: 512 QASLPHEDAYDCPEREPAASTPEVPAGASPAGEAVRLASGPAEALPWDDETAHGLNADEQ 571 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A+ D A P+++ + + + TP + P A+ E + + Sbjct: 572 AAHDDMFGAPAEPASVPVSSSGQAVTTAPDVTPPADVRAPDVMPDAVAVPAESAEALAAS 631 Query: 511 AKLAAEAIERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVC-LHLRSSQRHLNNRG 567 +A W A V L L +A NA + + L L + R + Sbjct: 632 GPVATGTGLTGDWIALVDTLKDSLGAKARLLAQNAELVAREGELVRLRLPGAHRFVAGAD 691 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 + LA+AL+ G V + + D T L R + EKL AR +I D + L Sbjct: 692 YRSALADALATHWGQPVRIEVEIGDV-VGETHLMQRARVQGEKLELARSAIEQDPRVAEL 750 Query: 628 RRFFDAELDEESIRPI 643 +R F A + ESI+P+ Sbjct: 751 KREFGAVVVPESIQPL 766 >UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=A9D7T4_9GAMM Length = 882 Score = 335 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 254/629 (40%), Positives = 338/629 (53%), Gaps = 14/629 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLFSGTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLLALTNALTQQRLHHAYLFSGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE GITA+PCG C +C EI +GRFVDLIE+DAASRTKV+DTR+LLDNVQY P+RGRF Sbjct: 61 GLNCEQGITASPCGQCSSCVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL ++L +E + + AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 181 DEISAQLSYVLTQEQLTFDHAALTLLAKAANGSMRDALSLTDQAIAFGAGTVQLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ LSL A+V+ + E +M +I + + G + E +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEKHVLSLFNALVQGDIENLMRMIGQILSFGADPEEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA++F Sbjct: 301 AAQLSI--YSEQIKAFAEQLSPEQVQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVSFV 358 Query: 361 PRMPLPEPEVPRQ---SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P P+ V + + + P V Sbjct: 359 PETPVTRWVVDKPAKVIIPERVTGQDNPQQPEAKDKPVSQDNSNGQPTEVQKEPVSEPVP 418 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 +L A ++EP T N+ + S P + ++ E Sbjct: 419 ELVSKPEAAVIPQAEPDDETDDLLALNSEQALILSQASSQGVEPSSLNTAEPDSQAETTH 478 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--------Q 529 + E + PEL+ + A+ + D Q Sbjct: 479 LDDKAVRLSPPEDPSKVNPPGSNQSELSQPELSPEQLAQDADFDAQYGFQQDEQELGDYQ 538 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + V+ + + + + A+ + S + Sbjct: 539 TPVADDVQPIQQTVTPSPQSDVGSGLTGQGPDFQAGTELEDDILAAVLAARDSLLTDLAK 598 Query: 590 EDDNPAVRTPLEWRQAI-YEEKLAQARES 617 + A + P R+ ++ QA Sbjct: 599 TPEESAGKKPEVQRKDFAPPKRQPQAEND 627 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 97/258 (37%) Query: 383 VMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPV 442 TP + + ++ P + ++ A Q + K AA + Sbjct: 597 AKTPEESAGKKPEVQRKDFAPPKRQPQAENDDAAPSSLGGQAIVEVKSDAKAALQSQPVL 656 Query: 443 NNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE 502 A +R A + + ++ V Q V + +A Sbjct: 657 ATAIEDRPPWEESVEVAATENTTSSGGDEQGTDTHPMVSSQVEAQVPVQDQVQTEIQAQS 716 Query: 503 HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRH 562 + P L W +S + + V Q+A+N+ E + L L+ Q+H Sbjct: 717 FDPLPPLGEGEVTGNEVDLNWYRLMSAIDVGGRVRQLAVNSVCHEFTEPLSLLLKPIQKH 776 Query: 563 LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 L A +L EAL + G+ ++++I + TPLE RQ + E AQAR+ ++ D Sbjct: 777 LAAEIAIVQLEEALGKVLGAEIKVSISVGVDGDRETPLEVRQRFHREIQAQARQGLLTDT 836 Query: 623 NIQTLRRFFDAELDEESI 640 N+Q L AEL+ +S+ Sbjct: 837 NVQWLMSQMGAELENDSL 854 >UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma and tau n=1 Tax=Moritella sp. PE36 RepID=A6FBQ8_9GAMM Length = 814 Score = 335 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 257/551 (46%), Positives = 325/551 (58%), Gaps = 11/551 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F VVGQ+HVLTAL N L R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPHNFQQVVGQQHVLTALVNALEQDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+TPCG C C EI+QG +VDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEKGITSTPCGECSTCVEIDQGCYVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+TILSRCLQFHLK L Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCLQFHLKCLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL HIL+ EH +E AL +A+AA+GS+RDALSLTDQA++ G G+V Q V M Sbjct: 181 EQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSLTDQALSHGAGEVLYQTVLDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L L+ +V + + MA I E ++ G +++ L VE+ LLHRIAM Q+ P+ Sbjct: 241 LGTLDHSHMLQLLRLIVSGDANKCMAKIAEVSSLGPDFDQLHVELASLLHRIAMAQILPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ +++ L + P D+QLYYQ L GRKELP APD R +EMT+LR LAF Sbjct: 301 SV--VDTEHADKVKALCDDMSPEDVQLYYQITLTGRKELPLAPDPRSALEMTILRMLAFR 358 Query: 361 PRMPLPEPE-----VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P+ L PE P V T + P + Q+ Q +P Sbjct: 359 PQGRLQAPERDVTPAPVAIAPAVTETIIAAPVEQTVVSQAPVQATTPAVMPIAAPVPAQI 418 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 +QQ + + A A + A + +QA +E ++ Sbjct: 419 QQQAPQQVQQPVPESMPQPVAPAAEQRDEAVTNLNLEQNELLQAAQAMGHVEPKTVTPQS 478 Query: 476 YRWKATTPVMQQK----EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 + P + ++ P A +A ++++ + Sbjct: 479 VEQQTADPQSVEPQNYVTPQIESPSVAPQDYAAPQPINTAPVAENSVDQGRKTRNFLRSR 538 Query: 532 LPKLVEQVALN 542 L ++ A Sbjct: 539 LGTTAKKSAAA 549 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 7/279 (2%) Query: 372 RQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKS 431 R A + ++ P P++A T + T + + +A++ Sbjct: 536 RSRLGTTAKKSAAAKSEQAPSSYVPPKKAVTPVIQHTPAMQSRFNAPASQPMQQQQAQQQ 595 Query: 432 EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV 491 A P+++ + Q + + P P ++Q + Sbjct: 596 SAPAWQELPPLDSYQDQGNFQGQGNYQDQDQGGYHNQMPEPSAYPAQGFAEPAIRQIDRF 655 Query: 492 ATP-------KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 + +A + K+ A E DPW ++Q+SL V Q+AL++ Sbjct: 656 SQVKVDINDLSPAFQAQKSGKSTATAPLDNKLRDENDPWCCYINQMSLGGRVRQLALHSV 715 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQ 604 E+ + L + QR+ N ++Q+L++AL + VEL I +N TP + + Sbjct: 716 MEQEPGRITLTMNPDQRYFANDKSRQQLSDALQQVLSEPVELVINFGENLNKSTPAQLEE 775 Query: 605 AIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 IY+++LA A +++ D IQ A +D+ SI P+ Sbjct: 776 IIYQQRLANATKNLYDDKYIQFFMNRLGAVIDDSSIVPL 814 >UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8W3_ATOPD Length = 755 Score = 335 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 145/612 (23%), Positives = 246/612 (40%), Gaps = 44/612 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + ++ HAYLF G RG GKT++ARLLAK + Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAIL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C++C+ I G+ D+ EIDAAS T V++ R+ ++ YAP G+ KV Sbjct: 62 CHEAPGHLPDGTCEDCQLIAAGQHPDVFEIDAASNTGVDNVREEIISRASYAPVCGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F++ TTDPQK+ TILSR +F +++ ++ Sbjct: 122 YIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSRVQRFDFRSIAADE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L + E +E A+ L+ R A G +RDALS +Q G G +S Q V +LG Sbjct: 182 MAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVYGGGVISEQTVRDVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 S A+ + + + +N G + E+ + + + + Sbjct: 242 QSSGSLINSAALALAQRDISSLFTTVNTLFEGGKDLLQFTRELAAHVRDLYVATAVGVDS 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +A ++ + A+ + L ++ A ++R+ +E+T + Sbjct: 302 PALANSSASTEQLTKEAQAFGSVDRLSRVLTVLGDAANQMRTAVNQRLVLEVTFTKLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + L V++ V P P + AA + Sbjct: 362 NTELSLEALADRVAVLEQQLANGVVSAPVVQNSAAPVHASTPAAPAAPQPTSAPAAAPVV 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + PA A + + T P+ + A + Sbjct: 422 AHTSTPVPTPVAAPAPAPTQQSAPELPSQPEPKPTAATVPVSAPAPVAAATS-------- 473 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS--QLSLPKLVE 537 + P ++A+ W Sbjct: 474 -----------------------SQPAPVPKEVDQSDALLARQWKEVSKVCTSKNAAHAA 510 Query: 538 QVALNAWKEESDNAVCLHLRS----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + + + + + + + L + R L+ + E ++ + G I ++ Sbjct: 511 LLVSSTLESDDGSELVITLPKGSSFAMRMLSTPAVSDFVKECVAQVIGPR---RIKYVES 567 Query: 594 PAVRTPLEWRQA 605 T + + Sbjct: 568 SLAATAISREKR 579 >UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter sp. MED105 RepID=A6GQQ4_9BURK Length = 586 Score = 334 bits (856), Expect = 6e-90, Method: Composition-based stats. Identities = 213/640 (33%), Positives = 312/640 (48%), Gaps = 68/640 (10%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q LARKWRP+ F +VGQ HV+ AL++ L R+HHAYLF+GTRGVGKT+IAR+LA+ Sbjct: 5 ASQALARKWRPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARA 64 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NCE GI+ TPCG C C EI QGRFVDL+E+DAA+ T+V++ R LL+N YAP GR+K Sbjct: 65 VNCEQGISRTPCGKCQACVEISQGRFVDLLEVDAATNTRVDEMRALLENAMYAPTAGRYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNA+LKTLEEPP HV F+LATTDPQK+P T+LSRCLQF L+ L + Sbjct: 125 VYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPPD 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+ L HIL+EE IA EP AL+LLA+AA GS+RDALSLTDQAIA G V+ V ML Sbjct: 185 QLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSAGHVTEDTVRTML 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D L++A+ + +G+ ++ L N AA + A+L E+ + +R+++ + Sbjct: 245 GAIDQQVVHQLLQALAQGDGKALLELSNALAAASAPFGAILDELAAIAYRLSVAHFAGG- 303 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + ++ L D+QL YQ R EL AP+ +G M L+R LAF P Sbjct: 304 -LDADDPDQAALQNLQGAFGAEDLQLIYQIATHARAELHLAPEEHIGFSMALVRMLAFKP 362 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 P + TVP+ V + Sbjct: 363 ---------------------GGQGAVTRSAPLAPAVVKATVPVMAAKPAVAQSPLPKAA 401 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 Q A A + + ++ + + ++ +PV + + + Sbjct: 402 PQAAAPAVADDFDESPPWDTADDLPVAQSQPAAPAIKPQPVYNQSASGDLPSATNWPQVS 461 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 V + + Sbjct: 462 QEVPAKGLTRQALVQAELVEA--------------------------------------- 482 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + + LR++ + +L AL GSTV L + + +T Sbjct: 483 ----SREGDVLQIVLRTAIKAYTEASMVTRLEGALGQYYGSTVRLQMQFGEAQ--QTAHA 536 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + L A++++ D ++ ++ A + S R Sbjct: 537 VQSETRRQALEGAKQALQEDPFLKDIQNLMGATVVSGSER 576 >UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 Tax=Actinomycetales RepID=C7Q5N1_CATAD Length = 863 Score = 334 bits (856), Expect = 7e-90, Method: Composition-based stats. Identities = 159/589 (26%), Positives = 235/589 (39%), Gaps = 22/589 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TF +VVGQEHV L L GR++HAYLFSG RG GKT+ AR+LA+ LN Sbjct: 20 LALYRRYRPETFEEVVGQEHVTLPLQQALRNGRVNHAYLFSGPRGCGKTTSARILARCLN 79 Query: 64 CETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G T TPCG C +C E+ G +D+IEIDAAS V+D RDL + +APA RFK Sbjct: 80 CEQGPTPTPCGTCRSCVELANGGSGSIDVIEIDAASHGGVDDARDLRERAFFAPAASRFK 139 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 140 IYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSRTHHYPFRLIPPG 199 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 +R L I E I EP L L+ RA GS RDA+S+ DQ +A D V+ + + Sbjct: 200 VLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVLDQLLAGADENGVTYAMATGL 259 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LVEA +G V L+++ G + L ++L + ++ Sbjct: 260 LGYTDAALLDRLVEAFAGNDGAAVFGLVDQVVESGHDPRRFLTDLLERFRDLVVLNAVTD 319 Query: 301 -----ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 AL + RM AR+ +++ + G E+ A R+ +E+ R Sbjct: 320 AGAARALIDVPDDQFERMAGQARSFGASELSRAADLVNTGLTEMRGATAPRLLLELVCAR 379 Query: 356 ALAFHPRMPLPEPEVPRQSFAP-----------VAPTAVMTPTQVPPQPQSAPQQAPTVP 404 L P V + P + P+ Sbjct: 380 VLLPGADDAERGLVARVDRLERRGVVLGAAAPAPMAPMGSGPRVVEDEYDEPPVRRPSAA 439 Query: 405 LPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPS 464 + V A + + P A+ + + + Sbjct: 440 GAGAGASVPAGSVPSGGNPQNAPDNQQATGGGSLGTPPWEQGGGPSAANSGGGAEQSAAN 499 Query: 465 A---LEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + A W+ A A E + + AA + Sbjct: 500 SGGAPNPAAGPLGTPPWEQGAGAPAAANANANANNNANANAPEPSSTGSGPAAATSQGAL 559 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 S +Q ++ + Sbjct: 560 GTPPWESGAPNAGASQQANAGPGPSSESAPSWAADATAPSSASVPEPPA 608 >UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Tax=Symbiobacterium thermophilum RepID=Q67TJ5_SYMTH Length = 570 Score = 334 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 160/454 (35%), Positives = 233/454 (51%), Gaps = 2/454 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++ L R++RPQ F +VVGQEH+ L N + GR+HHAYL SG RG GKT++AR+LAK Sbjct: 1 MAHLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G +DLIEIDAAS +++ RDL D V +AP ++ Sbjct: 61 AVNCLNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ QKLP+TILSRC F + L Sbjct: 121 KVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 ++I +L + ++ + P AL +AR A+G +RDALSL DQ +A +G+++ A Sbjct: 181 DEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAAEGEITLDMTLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-LS 298 +LGT DQ L+L ++ + + ++E G + L+ + L L + +V+ + Sbjct: 241 VLGTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKLEA 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + A +MR A + + L EL +P R+ VE+ L+R Sbjct: 301 GAQVLGLPAEALEQMRARAEPFAERQLIRAIRLLGQAETELRLSPSPRLLVEVALIRLTG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 E E + AP+ +PQ A Q P A Q Sbjct: 361 LFTGAAADEGEDDGTAAEAAAPSRRRRQEHGEVRPQGASQATAPGPAGPGDPGEPAGGQA 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLAS 452 A + + + R ++ Sbjct: 421 TTPSAPAPVGAGVDRVVEAWEQVLGLVRKARTST 454 >UniRef50_Q7NK69 DNA polymerase III gamma and tau subunits n=1 Tax=Gloeobacter violaceus RepID=Q7NK69_GLOVI Length = 632 Score = 334 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 173/621 (27%), Positives = 268/621 (43%), Gaps = 19/621 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F DVVGQ ++T L N L GRI HAYLF+G+RG GKT+ ARL+AK Sbjct: 1 MAYEPLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T PCG C+ C I G +D+IEIDAAS T V++ R+L++ Q+AP + R Sbjct: 61 ALNCIHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQ 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHMLS +FN LLKTLEEPP HV F+LATTDPQK+ T++SRC +F + + + Sbjct: 121 KVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I +E I E A++L+A+ A+G LRDA SL DQ G + + + + Sbjct: 181 TDMVKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLE-GTIGAERIWQL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + + L + E + + R++ + G E +L ++LG + + +P Sbjct: 240 VGAVPERELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPD 299 Query: 301 ALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA +M E A+T+ + + L ++ + R+ +E+ LL LA Sbjct: 300 RRDLVAVTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGLLGLLA 359 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + A P P + P P P + Q Sbjct: 360 SPSQNQPVALAPAAARPAAPVPVPPPRPAEERPTPPPPAAPRGVEERPNSVPQPPVEPTP 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 QR Q + + A ARP + R +P + + Sbjct: 420 PQRPQVPPPSIEPAAAIHRPARPSGSTPDGTGLRERWPEWIRLIPQPTQSLMSSSFWLEE 479 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER--------DPWAAQVSQL 530 V+ +A + + L L + A V+ Sbjct: 480 TPKRLVIGFTTEPLVKRASEPRRLKQIQEVLQQFLGRPIEVQFHIGKAPAAAPAVAVASS 539 Query: 531 SLPKLVEQVALNAWKEESD----NAVCLHLRSSQRHLNNRGAQQKLAEA---LSMLK-GS 582 + + + + S+ + + +L A L+ G Sbjct: 540 QSAAYTPPPVSFSPPAPPEVTPVSPTTVAPPSAAKPPLSDEEPDELDRAARGLAEFFNGE 599 Query: 583 TVELTIVEDDNPAVRTPLEWR 603 + ++ P P Sbjct: 600 VISFDGEAEELPGATQPGAAE 620 >UniRef50_C0JZX8 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured bacterium URE4 RepID=C0JZX8_9BACT Length = 577 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 146/635 (22%), Positives = 251/635 (39%), Gaps = 65/635 (10%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V ARK+RP +F ++GQ+++ L+N + G++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSQYIVSARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC PCG C++C ++GR + E+DAAS V+D + L++ VQ P G Sbjct: 61 KMINCAHPGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQVPPQVG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ VY+IDEVHMLS+ +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 KYSVYIIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQTYDFNRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L I +E I + +L ++A+ A+G++RDAL++ DQ +A + + V Sbjct: 181 GIPDMVRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFCGTDIKYEDVV 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD D + +VE + + ++ +E ++G + + L + + + + Sbjct: 241 RNLNVLDYDYSFGMVENFLSGSYAAALSSFDEILSKGFNALHFVAALSSHLRDLVVARTA 300 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++ ++ R RE A P + A + R+ +E L++ Sbjct: 301 GLDALLELPDSLKQRYREQAARCPLQFLYDALGVTTACEAGYKAAVNPRLHIEFALMKLS 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R + AP V P P P P P+ Sbjct: 361 FLTGRTDV-----------SAAPRPVAVPQAAPVIPSEKPSAIPSEAKESPAPAPADKTA 409 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + +A + E+ +P Sbjct: 410 VAVAPVPTRQRRAPKNGSALSMNAIMQEKEEKPEQEAPVAAEAALPDDA------AVKDG 463 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 WKA + + +A A + E+ + + + W Sbjct: 464 WKALIAKFEARPRLANALAKAELRMSEEAGVKSVFFSVSNAAQKQWIE------------ 511 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 + L + + S ++ + DD P Sbjct: 512 ----------------------------EKLLRDLETSFREILQSR-KVNLHVDDIPE-- 540 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFD 632 E + +A++ + ++ Sbjct: 541 --EEPGEKKPYMPEEKAKDLMDKHPEVRAFVADLG 573 >UniRef50_B9CMB1 DNA polymerase III subunit gamma/tau n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMB1_9ACTN Length = 723 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 150/613 (24%), Positives = 232/613 (37%), Gaps = 53/613 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RPQTF VVGQ+HV+ L + G++ HAYLF G RG GKT++ARLLAK L Sbjct: 2 ESLYTKYRPQTFEQVVGQKHVVGTLKRAVLEGKVSHAYLFCGPRGTGKTTMARLLAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C P G C+ C+ I G D++EIDAAS T V++ R+ ++ YAP RG+ KV Sbjct: 62 CRKAPGQLPDGTCEECQLIAAGNHPDVVEIDAASNTGVDNVREEIISRANYAPVRGKGKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ T+LSR +F A+ E+ Sbjct: 122 YIIDEVHMLTTAAFNALLKTLEEPPAHVTFILCTTDPQKVLGTVLSRVQRFDFHAIGNEE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + E ++ RAL+L+ R A G +RDAL+ +Q GDG VS LG Sbjct: 182 MLSHLQQVCEAESFQYDARALELIVRHARGGMRDALTSLEQLSVFGDGVVSLAIAQDFLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--A 300 + A+ + + + +N G + E+ + ++ Sbjct: 242 EASGSLLAHVSTAIAKRDVSTLFEQVNTLVDEGRDVLQFTRELAAHIRNAYVMAAVGPDT 301 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + ++ + R + L ++ A ++R+ +E+ R Sbjct: 302 SALTITDDERTQLAQEVREYRSADRLARALTILGDASNQMRTASNQRLVLEIAFTRLARP 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + L V T P V T ++A+ Sbjct: 362 TSDLTLESLAERIADLEYQLADGVSRSTSDVDTSSVTEVTKPPVETAPTPVVEVSAQMTS 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 V A+P + Q Sbjct: 422 APVVEVPVQPMPTLVVEMPAQPAPLTPPVSEPTPEVPSQ--------------------- 460 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE-Q 538 A EA W V Q Sbjct: 461 -------------------AETSSHDASARTPGNADEATLTRRWKQIVKQYREKAPAHGS 501 Query: 539 VALNAWKEESDNAVCLHLRS-----SQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 + +N+ D + L L + L +++L + + G T+ ++ Sbjct: 502 LLMNSTLASDDGSNLLVLLPKGSEFASAMLGREEIKKELLTFIEPVLGMR---TVTYGES 558 Query: 594 PAVRTPLEWRQAI 606 + + Sbjct: 559 SLQNKAIADAERA 571 >UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 Tax=Bacteria RepID=A3QF53_SHELP Length = 1113 Score = 333 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 241/600 (40%), Positives = 329/600 (54%), Gaps = 24/600 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L + Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + ++ A++LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D+ + L++A+ + + + +M + + + G + +L +L LLH+I + Q +P+ Sbjct: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A+ + P +QLYYQ LL GR++LP+APD + G+EM LLRA+AF Sbjct: 301 AAQL--SQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + + P + + P ++ + Q Sbjct: 359 PEAPVQRW-MGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEA 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 V+ + ++ A+ V + + ++ + E + + Sbjct: 418 EVEDKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADS 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ----------- 529 T +++ A ++ L + A + + S Sbjct: 478 TEKDALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPEPESSPEPSPQ 537 Query: 530 ----------LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML 579 + A + L + +A S Sbjct: 538 ETSSANKSPVSEASAESKVDASTSAATAQGGEAALSTEPKMPAESVEQTASIAEQASSSA 597 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 95/272 (34%) Query: 369 EVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKA 428 Q + P S V P LA + Q A Sbjct: 814 APETQHNYSAQQPNAYLNDEDRPPWVSPEPSLQAVTAPSDEVPNLAGQVDTQSESHARAD 873 Query: 429 KKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQK 488 ++ + + +L+ + + + E+ + Sbjct: 874 AAAQIEQGLDELSLEDQSLDDQSLDDQSLDDQSSEDLNSDDQGSNESGAFGNHPVQSPAA 933 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEES 548 + V+ P A+ + + A W +S L + V Q+A+NA + Sbjct: 934 QEVSAPSAVTEPVSQTTQVAFVADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAF 993 Query: 549 DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYE 608 + L L+ +Q+HL GA +L +ALS G + ++ P TPLE RQ + Sbjct: 994 SEPLPLVLKPNQKHLAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQRFHR 1053 Query: 609 EKLAQARESIIADNNIQTLRRFFDAELDEESI 640 E L QA + ++ D NIQ L + AE++ +S+ Sbjct: 1054 ELLEQAHQGLLQDENIQWLTQVMQAEMEPDSL 1085 >UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE33_ACHLI Length = 564 Score = 333 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 143/424 (33%), Positives = 235/424 (55%), Gaps = 14/424 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L R +RP+ F DV GQ+ ++ L N L +I HAY+FSG RG GKTS+A+++AK Sbjct: 1 MSYVALYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIGHAYIFSGPRGTGKTSVAKIVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG CD C +++G D+IEIDAAS V++ RDL D V+YAP+ G++ Sbjct: 61 ALNCLEAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP++V F+LATT+P K+P TILSRC +F K +++ Sbjct: 121 KVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFDFKNIEM 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI L+ I+N+E++ P AL +AR AEG +RDALSL DQ ++ + +++ + + + Sbjct: 181 DQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFTNDEITEEDIYTV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L L++ + ++ + L+N+ G + ++ +++ L + + ++ P Sbjct: 241 SGGLSRRYINELLKVIYLKQPQKALDLLNQIIKDGKDIARMVSDIILALRDVLLDKIRPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D+ I+ + I Y L ++EL + +R +E+ L++ + Sbjct: 301 KKYPDLKDIKPNL-----------IYAYLDILNDLQQELKFTTSKRAYLELALIKMIN-- 347 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + + Q + P +P + L A ++ Sbjct: 348 -HESIEMVSLEDKITHLESDIVKLKELVNKAQVSQEAVKTPVQNIPASRPTNLKALVTVK 406 Query: 421 RVQG 424 ++ Sbjct: 407 EIED 410 >UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N205_9FIRM Length = 640 Score = 333 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 153/587 (26%), Positives = 267/587 (45%), Gaps = 20/587 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RPQTF +V GQEH++T L N + RI HAYLF+G RG GKT++A+LLAK Sbjct: 1 MSYKALYRSYRPQTFGEVAGQEHIVTTLKNAIKENRISHAYLFAGPRGTGKTTVAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ I G D+IEIDAAS V++ RDL+D V+YAP G++ Sbjct: 61 ALNCTGENP--PCDQCPNCKAITVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPINGKY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP H+ F+LATT+P K+ TI+SRC +F K ++ Sbjct: 119 KVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKKVEN 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +LE++L E+ +E AL+ +A+ AEG +RDALS+ +Q +A + +++ ++V+ + Sbjct: 179 HDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAY-NNELTVESVNMV 237 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G L D +S ++ ++ + + V+ ++ + I+ + L +++ +L I + + + Sbjct: 238 YGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRLTFDLVDVLKDIIIYKNTQD 297 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + LA I + L+ + D E+ +L+ Sbjct: 298 -VSILFVLTQQDVDNLAPYILVEEAFEIIDILIEASSHYSQSLDANTYFELAMLKICNRI 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + T + P V ++ + + + ++ Sbjct: 357 KEENKLAIDNSKAIEQVNILPVKDTAKAI-----------PVVEETDSLPEEVIEDEIIE 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + A + +V A + Sbjct: 406 EELNKGVIEYDPEIEESIPEELKAKADDITETVVPEEVAEGTLETVISNSDVSLPVGEDI 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS---QLSLPKLVE 537 + + + V +P+ ++ + + A ++ W L+ K Sbjct: 466 SQEIDENIIVNKSPENIEVSFSDILNILVQADRRVLNDIKEKWTVIARYRFNLNTAKFAS 525 Query: 538 QVALNAWKEESDNAVCLHLR--SSQRHLNNRGAQQKLAEALSMLKGS 582 + + + + + +N +L L + G Sbjct: 526 MLCDGKPVAAAPGGIIVAFEHQPNVNEVNETQNYYQLKNFLKEVLGE 572 >UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 Tax=Cystobacterineae RepID=A7HGU5_ANADF Length = 606 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 197/651 (30%), Positives = 287/651 (44%), Gaps = 63/651 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y VLARK+RPQ F ++ GQ+HV+ L+N L G++ HA+LF+G RGVGKT+ ARL+AK Sbjct: 1 MNYLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G TA PCG C C EI +GR VD++EIDAAS V++ RD+++ V+Y PAR R+ Sbjct: 61 ALNCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARDRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DEVHMLS +FNALLKTLEEPPEHVKF+LATTD K+P TILSRC +F + L + Sbjct: 121 KVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLTL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI QL + E + P AL L+AR AEG +RDALSL DQ A+ AV+ Sbjct: 181 QQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPDEAAVAEA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + A+V G ++A + ARG+E + + E++ L + + +L PA Sbjct: 241 LGAVDAAAISRICGALVHREGGALLAELEALHARGLEMKRVAEEIVRHLRNVVVARLVPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +R A P + + ++ + R +E+ LL + Sbjct: 301 TPLDLPDGELAEVRAQAAAADPAQLTRLFDLAQRAVVQVKLSEQPRYALEVALLEGVFLA 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E ++ A AP + PP P + P ++ A Sbjct: 361 PGAQVSELVARLEALARGAPLPPRSAPPSPPPPSAVPAPGGQTGAGGAAARTGLASSGTP 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ P A+ P A Sbjct: 421 GCAEGSEPAGWRPLPASTGSPA-------------------------------------A 443 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 P A P A + P + Sbjct: 444 GHPERSSDASAAEPSRGAPTAYGSDAERWRAAVDEVEKVS------------PAGAPMLK 491 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR--- 597 + D + L + + + + +L L+ G V L I PA Sbjct: 492 QAVLRGIRDGEIDLVMPTDFLARSVERRRSELEPVLTQFLGRPVRLAISVGAPPAAEAQS 551 Query: 598 ----TP-------LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 TP A + + A+ RE+ NI+ R D +D+ Sbjct: 552 PDATTPTPVPASIAATEAAERQARSARVREAARNHPNIREAVRILDGGVDK 602 >UniRef50_B2RJ68 DNA polymerase III, gamma and tau subunits n=2 Tax=Porphyromonas gingivalis RepID=B2RJ68_PORG3 Length = 602 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 148/642 (23%), Positives = 266/642 (41%), Gaps = 52/642 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y V A K+RP +FA +VGQE + L + + + HAYLF G RGVGKTS AR+ A+ + Sbjct: 5 YIVSALKYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAI 64 Query: 63 NC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC E CG C++C+ ++ R +++ E+DAAS V+D R L++ P G++K Sbjct: 65 NCLERLPDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIEQANVPPQIGKYK 124 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNA LKTLEEPP +V F+LATT+ K+ TILSRC F K + Sbjct: 125 IYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPA 184 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L ++ + E I E AL ++A A+G +RDALSL D+ +G ++ L Sbjct: 185 RIEQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANTIENL 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 LD D L + ++ + V+ +++E A+G + + ++ + + M Q + Sbjct: 245 NILDYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGLASFFRDLMMAQDASTL 304 Query: 302 LGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + R ++A P + + + L ++ + +R+ +E++L+ A Sbjct: 305 PLLEQSEVVIQRYVDMAARCPTSFLYQSLKILNACDQQYRQSNGKRLLLELSLMNIAALF 364 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPP--QPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P A A + ++P P QP AP Q+ P P Q Sbjct: 365 SKGLTAPPPTHGAQHANPAVSGSVSPRPAPAKEQPSVAPSQSSVPPQPSIGEQRRQPETT 424 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + R R + + + +++ + Sbjct: 425 APTITEDKPEQTKVVPPTRPMATSTVGSEGRFTLRGIRNKQEQLQNNIQEVRTEM----- 479 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLPKLVE 537 + E + W +LS ++ Sbjct: 480 --------------------------------TESFDEEQLQLAWIEFAETKLSEEIHLK 507 Query: 538 QVALNAWKEESDNA--VCLHLRSSQRHLNNRGAQQKLAEALSMLK-GSTVELTIVEDDNP 594 + N + + + +S++ +L L+ +T+ + + ++ Sbjct: 508 ETMANCLPKLRPGTSAFEVEVLNSRQEEEINNVSARLLSFLADKLCNTTIRMNVRVSEST 567 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 ++ + + + LR L Sbjct: 568 SLN-------RVPVSLDEKIECLNQENPLFDELRMRLGLSLV 602 >UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 Tax=Shewanella RepID=Q12LL5_SHEDO Length = 921 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 251/645 (38%), Positives = 334/645 (51%), Gaps = 26/645 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLLALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY PARGRF Sbjct: 61 GLNCETGVTASPCGTCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QLE IL +E + E +AL LLA+AA GS+RDALSLTDQAIA G GQV V M Sbjct: 181 DEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAFGSGQVMLTQVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ Q + L++++ +A+ +M + + G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDERQVIGLLKSLCDADIAHLMQTTAQVLSFGADADEVLRSLLELLHQITLSQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + ++ A+ + P +QLYYQ LL GRKEL +APD + G+EM LLRA+AF Sbjct: 301 AAQ--HSLYSEQILAFAKQLKPEQVQLYYQILLTGRKELAFAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP--------------QSAPQQAPTVPLP 406 P + V + + + P+P T Sbjct: 359 PEKTVNRWVVDDTATLELPNGTSKAAAKTKPEPDVKLSAETTEVTEATETLAVLGTPVAQ 418 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 T++V + + + E A + L + AS+ Q S Sbjct: 419 TITAEVASLEVKDTPSDTEQVIEDDEGAPLKALTAEQDVLLSQAASMGFEPQNSNDDSPS 478 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + + + + ++ + Sbjct: 479 SDVVVNDTSSAQANDDASVTDEYADYMHYGFDEQVSEAHPDAYLQEPTLDSHSAEESLLV 538 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 +S+ + E S A+ L + + + L + Sbjct: 539 AEGVSVDGAALSSSAVLNPEVSQEALTLAVSDEALAPVVDDILDAVLASRDALIADVSAI 598 Query: 587 TIVEDDNPAVRTP----------LEWRQAIYEEKLAQARESIIAD 621 + + P + E QA Sbjct: 599 NLANNAEPNAGSIKVGVAKKPLGAPQASTQVESVRPQAETEAQNH 643 Score = 97.8 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 101/337 (29%), Gaps = 4/337 (1%) Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + LA + + +L A + A + + Sbjct: 556 NPEVSQEALTLA--VSDEALAPVVDDILDAVLASRDALIADVSAINLANNAEPNAGSIKV 613 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 + P + + P APQ T P A + Sbjct: 614 GVAKKPLGAPQASTQVESVRPQAETEAQNHAPQALVTQEAPLLDKVSTDADRPPWVAASD 673 Query: 426 TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVM 485 ++ A + + + + +A EA Sbjct: 674 GSSQFDPLKLAQDTPLSHAQDNRVSSVGMEDKTTLDSILPVIEALPAIEAEAQGTGYAEK 733 Query: 486 QQKEVVAT--PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + + ++ + W ++++ + + Q+A+N+ Sbjct: 734 MLDTAMPAKLMSDVADDDSGIDAQLISEHQISGHEMDLHWYKMMAEVKIGGRIRQLAVNS 793 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 + + L L+ Q+HL A ++L ALS V + + + TPLE R Sbjct: 794 VCQGLASPFPLLLKPDQKHLGADVAVKQLEAALSEYLQQDVSIAVNVGYDEHRETPLELR 853 Query: 604 QAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + ++E L QA++ +I N +Q L DA+L E+S+ Sbjct: 854 KRFHQELLQQAKQRLIGSNKVQWLLSQLDAQLQEDSL 890 >UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 Tax=Staphylococcus RepID=B9DLF5_STACT Length = 583 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 160/590 (27%), Positives = 264/590 (44%), Gaps = 22/590 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N ++ G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + PC CD C+ I QG D+IEIDAAS V++ R++ D V+YAP++ ++ Sbjct: 61 AINCPNSVDGEPCNECDICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI +L ++ +HI ++ A+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 DQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ +L+ + + A ++ A G E L+ +++ + M + + Sbjct: 241 TGSVDEASLNALLNDVANGQVKDAFARYHQFIAEGKEVNRLINDLIYFVRDTIMNKTAQR 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + + ++ ++ + E+ L++ Sbjct: 301 ET------EYDALMA----FDLDTLYKMIDLINDTLVSVRFSVNQNVHFEVLLVKMAELI 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + A A P + + E L + Sbjct: 351 KEGDA--PVANPDMHSANAHQAPSAPQPAQQNNDVSSALLQRLEHLEQELNALKQQGVTS 408 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + S ++ + L S E K + Sbjct: 409 TNTPPKQKSNSRGRRRSKNSYSMTQIAKVLDSANKEDIKLLKDHWQEVIDHAKNHNQKAL 468 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-----LSLPKL 535 + + V A+ K++ E E E+ + + +R V +S+ + Sbjct: 469 VSLLQNSIPVAASEKSVLVQFEAEIHCEI---VNDDDEKRSNLEEVVRSIINKNVSVVGV 525 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK--LAEALSMLKGST 583 L E N ++ + N QQ+ + + + G Sbjct: 526 PADQWLQVRSEYIQNRKKGGANNASQESANEPEQQEVDIVQKAKDMFGED 575 >UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 Tax=Shewanella oneidensis RepID=Q8EFG0_SHEON Length = 1002 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 246/572 (43%), Positives = 323/572 (56%), Gaps = 6/572 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCETG+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA++A GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + +V ++ +TP P A +Q +LA + Sbjct: 359 PEKSVKRWQVDDAVKVDLSAQPALTPQATIPPEVPAERQLAVNAPVAEKKTLLATVANPE 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A ++ A +++ + Q + + + Sbjct: 419 AQLQAETTPETALEDDEPELNAALIAEQQVILSQAQSQGFGASADPVVSSNTALNQDVNS 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + P + +LA + Q Sbjct: 479 SDPTDPDTALTEQTATEDVLDAQNTAGDLAPEPYVAEAYGQ--YDYAQSNDAQSNYAQFN 536 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 + + H + A ++L Sbjct: 537 HAQ--SYDTSTPLDAYQDDYAHFMSEDAAEQL 566 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 2/298 (0%) Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 D + + + P + P + T + + Sbjct: 686 SDFELPFDDDFEAEIYTKPELSTKATNAPLAPLSTRPITHSIIVPSTQQSAAAQHLPLDP 745 Query: 403 VPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV 462 P +A T + +E + + +A L LA +V Sbjct: 746 NDRPPWEDAPVAECHHGNAEPITTSRQVNEESHLRQESAALHAPL--LAVEPVQVAPALT 803 Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 +A ++A + + A + A+ Sbjct: 804 LPTNTQAAQVEQAAGQSHQLNHPDEVPATPPRELDAAAPPAPASDLTVAQSITGHPLDLH 863 Query: 523 WAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 W ++ L + V Q+A+N+ + N + L L+ Q+HL + A ++L +AL+ G+ Sbjct: 864 WYKLMASLDIGGRVRQLAVNSICQVQSNPLPLLLKPDQKHLAAQVAIEQLEQALTAALGA 923 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 ++ +V +P+ TPLE R+ ++E L QAR+S+I D+N+Q L F AEL+ +S+ Sbjct: 924 PRQVEVVIGTDPSRETPLELRKRFHQELLQQARQSLIMDDNVQWLINRFGAELENDSL 981 >UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 Tax=Zymomonas mobilis RepID=C8WB95_ZYMMN Length = 628 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 190/644 (29%), Positives = 298/644 (46%), Gaps = 35/644 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F+D++GQ+ ++ L N ++ R+ HA+L +G RGVGKTS ARL+AK L Sbjct: 11 YRVLARKYRPQKFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKAL 70 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G+T PCG C+ CR I +GR +D++E+DAAS T V+D RD++++V+YA Sbjct: 71 NCVGKDGHGGMTIDPCGECEACRAIAEGRHIDVVEMDAASHTGVDDIRDIVESVRYASVS 130 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 RFKVY+IDEVHMLS+ +FNALLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 131 ARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKVPITVLSRCQRFDLRR 190 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + ++ E + E AL ++A+AAEGS+RD LS+ DQAIA G + V Sbjct: 191 ISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSILDQAIAHSSGSILAADV 250 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D SL+ ++E G+RV+ + G+E EALL +L L+H I ++ Sbjct: 251 REMLGLSDRGVIKSLLVDLLEGKGDRVLDHVKAQYDLGVEPEALLHGLLQLIHAITRSKM 310 Query: 298 SPAALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 E + EL + + + +Q LL G E+ A EM LLR Sbjct: 311 GRPDNLTLHPTEEEIWLAELGKKLSFPVLHRLWQLLLKGHSEVQNAVLPLEAAEMALLRV 370 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + V+P+ +P P ++ A+ Sbjct: 371 IHASQLPDPATIIAQFKKQGSVSPSLSPSPEDNRLAPPTSS-----------FQDREASD 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + ++ A ++ + +L+ S + + E Sbjct: 420 VKKNISEQVSPSQFQAKEALSKNGNDFSKSLQPTEKKYFSSFDDDNNSRMAASDYPVEGK 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + + P Q + +A K E + + A L Sbjct: 480 QKFSELPENQPRPSAIPIAPASEAKLKNPHFPPDFKSLTEMLFDNGHALLGHSLEDYGR- 538 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 E + + L + +Q+L+ AL L ++ ++D Sbjct: 539 -------LIEYNPPRLLL----ENHSRISGETRQELSLALKNLTKQAWQVEFLQDRKGQP 587 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEES 639 + +E +A I+ +Q + + F DAE + S Sbjct: 588 S--FREAEIAQKEARQKA---ILNTPIVQAVLKTFPDAEWVQSS 626 >UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Psychromonas RepID=A1SX03_PSYIN Length = 774 Score = 332 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 238/625 (38%), Positives = 337/625 (53%), Gaps = 22/625 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP F +VVGQ+HVLTAL+N L+ R+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G+TATPCG C +C+ I+QGRFVDL+EIDAASRTKV+DTR++LDNVQY PA+GR+ Sbjct: 61 SLNCEKGVTATPCGACVHCQAIDQGRFVDLLEIDAASRTKVDDTREMLDNVQYKPAQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPE+VKFLLATTDPQKLP+T+LSRCLQFHLKA+ Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQFHLKAILP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL +ILN E E AL ++A AAEGS+RDALSLTDQA+A G G ++ Q+V M Sbjct: 181 QEIETQLAYILNHEQATFEHAALTVIATAAEGSMRDALSLTDQALAFGSGHIAYQSVLKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D++ L+ + N +V I+E G ++ L + L H IA+ Q+ P Sbjct: 241 LGSIDNNHLHYLLHFIASGNVSKVFLKIDEFVHLGADFAMLHQTLASLCHEIALSQMQPK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ LA + P ++QLYYQ + G K+ +AP+ ++ EMT++R LAF Sbjct: 301 Q----NVTQKSAVQLLAERLTPEEVQLYYQIAVQGYKDYAFAPNGKIAFEMTVMRLLAFK 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + E + + + P+ E Q AA Q +Q Sbjct: 357 PANYISLDERQLGNPNSAEASDAQQSNIAAASESVESVEIAEAPVIENLQQNPAASQIVQ 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + +S + + +++ Q EK E + Sbjct: 417 QEPKSADSVQSTSPSVEPLQRSAASSVPPPIERQPEPQQNQSAPPSEKIAPVAEVSHSRN 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW------------AAQVS 528 + K A + A+ + D + Sbjct: 477 MLRSHRLKRESAKKNQATTTEQPASVVASGAENVTAEFKADKYQMSGIDEDISSTPDLQG 536 Query: 529 QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 + + ++ + L + + + Q++ A+ LS ++ Sbjct: 537 VNRNNAIADNLSAIQDNRVDQEIIPLESYQQDQFVPDSDNQEQPADYLSQ------TMSA 590 Query: 589 VEDDNPAVRTPLEWRQAIYEEKLAQ 613 ++ LE ++ E +A+ Sbjct: 591 DYGESRGPENILENKREEKEPAVAE 615 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 10/302 (3%) Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 L H + + A V + ++ Q + +++ Sbjct: 473 HSRNMLRSHRLKRESAKKNQATTTEQPASVVASGAENVTAEFKADKYQMSGIDEDISSTP 532 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 L + + A + + + + ++ Q S A Sbjct: 533 DLQGVNRNNAIADNLSAIQDNRVDQEIIPLESYQQDQFVPDSDNQEQPADYLSQTMSADY 592 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKT---------PELAAKLAAEAIERDP 522 + ++KE K + E+ DP Sbjct: 593 GESRGPENILENKREEKEPAVAENKDKSSTFLSDNIFVNDDIERAEIDPGKYVADKLSDP 652 Query: 523 WAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQ-QKLAEALSMLKG 581 WA + ++ L LV+ +A N+ + + + L L+ Q+HL N +L L + G Sbjct: 653 WALAIQKMRLVGLVKLLAKNSVMKIVEQQIVLTLKPEQQHLLNNHQLCTQLETKLKVHFG 712 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + + + + T E AIY+ L A+ +I D NI T + A++ E SI Sbjct: 713 AQMSMYVEVGHVTGKLTAFESELAIYQTYLNNAKTAIKEDQNILTFVSEYGAKVYENSII 772 Query: 642 PI 643 P+ Sbjct: 773 PL 774 >UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD9 Length = 600 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 138/494 (27%), Positives = 237/494 (47%), Gaps = 7/494 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RPQTF DV GQE ++T L + + +I HAYLF G RG GKT++A+LLAK Sbjct: 3 MAYKSLYRTYRPQTFKDVAGQEAIITTLKHAIDEKKIAHAYLFCGPRGTGKTTVAKLLAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PCG C+NC++IE G D+IEIDAAS VE+ R L+D V+YAP +G++ Sbjct: 63 AVNCTGNP--KPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC +F L Sbjct: 121 KVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFDFTRLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ +++++L EE ++ +L+L+AR A G +RDALS+ +Q +A D +S + + Sbjct: 181 QEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAYNDDHLSINDIHTI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D +L++ ++ N + ++++ GI+ + L +++ +L I + + + Sbjct: 241 YGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDILKDIVVYRNTKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR----RMGVEMTLLRA 356 A + + + I + + L+ ++ A D + + + Sbjct: 301 AS-IMSVMTQKDLENIVPYITSDECFSFIDILMDASEKYIRATDPHIYFELALLRLCNQE 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 A ++ + V V + + + + Sbjct: 360 HAPSQKIEYTPIKEEPVKPVEVKKVEVKEEPIEEIMEEPVFEPIEEEIVEPAIEKKAEQP 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + E + + A + + + + A Sbjct: 420 VPQFNYEKKEEPETYESDDNIEVDQSDILNILVQADRKILNEVQEKWPVIRRYMANMNTA 479 Query: 477 RWKATTPVMQQKEV 490 + + Sbjct: 480 KAASMLSQGHPVAA 493 >UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB01_KANKD Length = 773 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 223/615 (36%), Positives = 314/615 (51%), Gaps = 25/615 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F ++ GQEHV AL N + GR+HHAYLF+GTRGVGKT+IAR+L+K Sbjct: 1 MSYQVLARKWRPKNFDELQGQEHVSRALVNAIESGRLHHAYLFTGTRGVGKTTIARILSK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE G+T+ PCG C +C EI++GRFVDLIE+DAASRTKV+DTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGLTSKPCGECGSCVEIDEGRFVDLIEVDAASRTKVDDTRELLENVQYKPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVYLIDEVHMLS SFNALLKTLEEPPEHV FLLATTDPQKLPVT+LSRCLQFHLK ++ Sbjct: 121 YKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLSRCLQFHLKHME 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I E AL+L++R+AEGS+RDALSL DQAIA G G+V + + Sbjct: 181 EQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLLDQAIAFGQGKVQEEDIRT 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLGT+D + L+EA+ + + + E + +++ L E+L +H++A+ Q + Sbjct: 241 MLGTIDHQFMVKLLEALANKDSAEAIKAVAEMSHYPVDFADALKELLSRIHQVAIFQSTG 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L +E A I D+QLYYQ L R++L +AP R G+EM LLR LAF Sbjct: 301 VLLDQAAPYVED----FASKIASDDLQLYYQMGLHARRDLEWAPSPRQGLEMALLRMLAF 356 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 Q S +A + Sbjct: 357 --------------------RLEPSQVVQNNSSQTSLDSEAKKKASLKQPESAAQPATVE 396 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + + + + + LE+ + P + + Sbjct: 397 PGLIENSALENNAAEKYSAPKTAPEQKLEQEPKQEREQKPEPSTAHKTVTEETQSFSDAP 456 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 P + + ++ ++ E + + ++ + Q Sbjct: 457 EEPPFNPDDYASFSDDEKTEESIVDQYQTASSSKPEEQAAQASSNTVIENKTVKENTAQA 516 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + N + L L S ++R QK+ + + T + E ++ Sbjct: 517 SSNEQAALASLHSALGLNFSDDADSDRAPSQKIEQPVQEEVVETGQTETGESESTQNEPE 576 Query: 600 LEWRQAIYEEKLAQA 614 + + Sbjct: 577 QSNDDEFRLQPVQPI 591 Score = 86.2 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 95/290 (32%), Gaps = 4/290 (1%) Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 A + + + T + + + L + Sbjct: 481 DQYQTASSSKPEEQAAQASSNTVIENKTVKENTAQASSNEQAALASLHSALGLNFSDDAD 540 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + Q + T E+ R+Q +A ++ Sbjct: 541 SDRAPSQKIEQPVQEEVVETGQTETGESESTQNEPEQSNDDEFRLQPVQPIEEEAEAESE 600 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 A V E+ +L+K + E E + A E + WA V ++ L Sbjct: 601 PATSPKLAQEQVSSVDEISLQETSLEKTVLVEAALEESGPPATEEALQ--WAQHVKKMDL 658 Query: 533 PKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 Q+A ++ K +D+ + L + +Q L+ A+Q + EAL+ ++++ Sbjct: 659 TGTYHQIAQSSTVKWLTDDKIQLTVEPTQDILSTDTAKQAIEEALAQYFSKSIKIEWQFA 718 Query: 592 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 + P V TP Q + K +A E I Q L + F A LD+ SI+ Sbjct: 719 E-PDVATPAMIWQRAAKAKHRKACEMITQHPFAQQLAQKFAATLDKNSIQ 767 >UniRef50_A8KYB1 DNA polymerase III, subunits gamma and tau n=2 Tax=Frankineae RepID=A8KYB1_FRASN Length = 855 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 172/614 (28%), Positives = 249/614 (40%), Gaps = 61/614 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL + L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTEALGHALRSGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEKGPTPEPCGVCDQCVSIRTGSSMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPSYLKFVFATTEPDKVIATIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 +R LE I +E + EP L L+ RA GS+RD+LS+ DQ +A +GDG +S + A Sbjct: 180 GVLRKHLESICAQEGVVVEPSVLPLVVRAGAGSVRDSLSVLDQLLAGAGDGGLSYERAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ E +G + +++ + G + ++L L + +V P Sbjct: 240 LLGMTDGILLDETVDALAERDGAALFTVVDSVVSSGHDPRRFATDLLDRLRDLIVVAAVP 299 Query: 300 AALGN-----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A+ RMR A I P ++ L G E+ R+ +E+ L Sbjct: 300 DAVERGLLEAFSTDQVDRMRAQAGRIGPVELSRTADVLHAGLVEMRGTASPRLLLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL V + A P + A ++ Sbjct: 360 RALLPGAAGDPAALAVRLERLERRAVVGGGAGAGTTPTGGAEVGGATHADARFGGARPAD 419 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + A A A Sbjct: 420 GGPGFGGAADSAHGQAAAHAPAPAAHT--------------------------------- 446 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS-QLSLP 533 A A W ++ + Sbjct: 447 ----------------QTARPASPARPAMPAAAAPGGGGLDAAALNARWDEVLALAVQRS 490 Query: 534 KLVEQVAL--NAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + + + E + V L + + + LA L+ G T +TI Sbjct: 491 RRTHAILKDYASVAEVRGDEVVLAFSAPAMAKMFGQGNNVEILATLLAEKFGGTWRVTIG 550 Query: 590 EDDNPAVRTPLEWR 603 + P R Sbjct: 551 GGPGSSGGRPQAPR 564 >UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CH16_9PLAN Length = 484 Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 147/446 (32%), Positives = 229/446 (51%), Gaps = 2/446 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y VLAR++RPQ F++VVGQ V AL N + R+ HAYLF+G RGVGKTS+AR+LAK Sbjct: 6 MQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAK 65 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PCG C+ C+ I G VD++EID AS ++D R L NV R ++ Sbjct: 66 ALNCPHTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVNVRSMRSKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP +VKF+ TT+P KLP TILSRC +F ++ Sbjct: 126 KIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEE 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+ I E ++ A+QL+AR A GS+RD+ S+ DQ ++ G+ ++ ++V + Sbjct: 186 NSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT D++ + L++A++E + + + A G++ + ++L L +++V + Sbjct: 246 LGTASDERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDLSVVATGAS 305 Query: 301 ALGNDMAAIELR--MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + R ++ A +Q L R + A R VE+ L+R Sbjct: 306 QVTLLSISEMNRASLQRQAEAWGIQTCLAAFQILNEARNRMFRASHGRALVELALIRMSL 365 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L + S P P P E+T ++ Sbjct: 366 LEDLDLLSRFLSSGGQIPAAPAAVRQASPSLSAAAVSQPVSEPPTPPQESTEPSSDQKKI 425 Query: 419 LQRVQGATKAKKSEPAAATRARPVNN 444 ++ + + ++ A Sbjct: 426 EKKNEIESPVASESIESSPPAAETVP 451 >UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfitobacterium hafniense RepID=B8FY14_DESHD Length = 554 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 146/535 (27%), Positives = 250/535 (46%), Gaps = 3/535 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP+ F D+VGQ+HV L N L ++ HAYLFSG RG GKT+ A++LAK Sbjct: 1 MAYLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C C I+QG +++ EIDAAS +++ RDL D V+ + ++ Sbjct: 61 ALNCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPPE V F+LATT+ K+P+TILSR +F + + Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L+ + EP ALQ++A+ +EG LRDALS+ DQ + DG++ + V + Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL-DGKLGVEQVYQV 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + ++ + LV+ ++ + + + + E +G++ ++ E+L + + + + Sbjct: 240 LGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYAST-Q 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA-F 359 A + + + + + + LL G +L YA + R+ E+ L++ + Sbjct: 299 AFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDS 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P+V + ++ + + + + E L Sbjct: 359 QPGYSKESPQVLERLQELEEEIKNLSTGKSRQESKGELPKKVNERSSEPPGHKKPELPPL 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q ++ ++ + + + LE++ A + + +K Sbjct: 419 QDKPAISQGGETAALSIEQVQGRWGDILEQVRKRKKSTHAFLMEGKPVELDGDSLVIVFK 478 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + K + + + + + E + K Sbjct: 479 EGLSFHRDKVNQKENRETIEEVLQSSLGKAYRLQSLLENEYGKDPKDSEHVEKTK 533 >UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 Tax=Dehalococcoides RepID=A5FRM9_DEHSB Length = 570 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 161/575 (28%), Positives = 252/575 (43%), Gaps = 21/575 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ QV RKWRPQT AD+VGQEHV L N LS GRI AYLF G RG GKTS R+LAK Sbjct: 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAK 63 Query: 61 GLNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC T PC C C I +G +D+IEIDAAS T V+D R+L + VQY+P+ Sbjct: 64 AVNCTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLAN 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS + NALLKTLEEPP V F+LATT+ K+ TI+SRC +F + Sbjct: 124 YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + +L I E I EP AL+L+AR+A GS RD +L Q + ++S V A Sbjct: 184 LVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG D++ +L E +++ + + + +N A G++ + E+L L +I +V Sbjct: 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGS 303 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR--KELPYAPDRRMGVEMTLLRAL 357 + A + +++++ +I + + + + + L Sbjct: 304 ESSLELTADEKKALQKVSGITNLENITKAIKAFSQLDFSSDTASSLSFELALIDASLDK- 362 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P + A A P+ ++ P ET ++ + + Sbjct: 363 -------NTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAE 415 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + TK + A + +E+ ++ Sbjct: 416 TAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEEKVLIGAGDIIEQLKVSWKSIL 475 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 +A + + V A + + +K + + + ++ +L K+ Sbjct: 476 DQAPDNLKRSAAVAILRSAGVRPVSMDKN------IVTLSFKYKYHKDKIEELENRKVTA 529 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKL 572 ++ N L S + QKL Sbjct: 530 ELISNFV----GKTCTLVCISEAETNHLVKQAQKL 560 >UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Tax=Cyanobacteria RepID=Q8DJU0_THEEB Length = 603 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 155/528 (29%), Positives = 240/528 (45%), Gaps = 8/528 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ F+D+VGQ + T L L RI AYLF G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T PCG C+ CR++ G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + ++ L++I ++E I EP AL L+A+ ++G LRDA SL DQ +++ + V Sbjct: 181 PLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLY-PERITVEQVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + G + + L+ A+ + V+ + RG + +L + L + + + Sbjct: 240 QLTGAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTV 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + LA +I + L ++ + R+ +E+++L Sbjct: 300 PQRRDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA---PQQAPTVPLPETTSQVL 413 + P P +P P T T +V + A PQ + Sbjct: 360 MTERVAQPPPPAVMPAARPQPTTMTPPRTEAEVAVAAKPAEPLPQDSALSVNHPHIQATA 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 AA + + A + + L S ++ + Sbjct: 420 AAAPEPALFPEPVANPEQVWQQALQVLQQMQMSTYALLSQHAHLRHLGDREVRIGIVNQT 479 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 K ++ + K ALE P Sbjct: 480 LLNLTKNNHAKIEAAFSQVLGRPTKVALEVAPLPAKTTPTPKAKEPPQ 527 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 38/348 (10%), Positives = 84/348 (24%), Gaps = 23/348 (6%) Query: 262 ERVMALINEAAARG-IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + L+ + + G + E+LL ++ RI + Q+ + + +AR Sbjct: 202 PEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLTGAVPEQDLRQLLGAIARR- 260 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP 380 L R+ L D ++ +P+ A Sbjct: 261 ------DAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQRRDLVALTAETWQ 314 Query: 381 TAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRAR 440 + + Q+ + + G + Sbjct: 315 ALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGLMTER----------- 363 Query: 441 PVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKA 500 A +V + +P + A+ A V P A Sbjct: 364 ----VAQPPPPAVMPAARPQPTTMTPPRTEAEVAVAAKPAEPLPQDSALSVNHPHIQATA 419 Query: 501 LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQ 560 + +A + Q+ + + D V + + + Sbjct: 420 AAAPEPALFPEPVANPEQVWQQALQVLQQMQMSTYALLSQHAHLRHLGDREVRIGIVNQT 479 Query: 561 RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYE 608 + K+ A S + G ++ + PA TP + + Sbjct: 480 LLNLTKNNHAKIEAAFSQVLGRPTKVALEVAPLPAKTTPTPKAKEPPQ 527 >UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 Tax=Shewanella RepID=A1RIP8_SHESW Length = 984 Score = 331 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 251/547 (45%), Positives = 318/547 (58%), Gaps = 12/547 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N LS R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 28 MSYQVLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TATPCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 88 GLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 148 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V M Sbjct: 208 DEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLTQVQTM 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ ++L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 268 LGSIDEQHVIALLKALTDADITVLMQTSAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 327 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++R A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 328 CAQQSL--YSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 385 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ + + Q ++ T + T V Sbjct: 386 PEKPVKRW----------QVESPAEVSLPVGQTSTSLAALATSAAEKKTDLVEQPTDVNV 435 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A +A A + P + A + Sbjct: 436 HAAVEINAPSDTADSALFAEQTLIISQALSQGYKLSESIAPTSIEIPVAAISQSEDTKVE 495 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T ++ VV + + + +A I +D +A+ S+ E VA Sbjct: 496 TLVSTNEQAVVNNTDSDTQLDYVYGHGDYTQDVAPLDIYQDDYASFSSESYSSLTQEMVA 555 Query: 541 LNAWKEE 547 A Sbjct: 556 EQATINP 562 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 1/268 (0%) Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 + Q + + P P T + + Q + Sbjct: 680 EFDFDDDFEPAPQMDGGFAQSVTQANKNPEASQPLTQNGQITQNGQKPSGEKPVSVDDPN 739 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 A P N + V+ P E AP + + + + V Sbjct: 740 DRPPWEAAPATNMQHPVVHPVSALEPVVPTAMQDELAPIDQAPHTPVSLMSDPIEDAVKE 799 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAV 552 + L ++ + ++ W ++ L + V Q+A+N+ + + + Sbjct: 800 SLTEPVTGLSNQTGLSVVQSVSGNP-LDLHWYKLMASLDIGGRVRQLAVNSVCQAQSDPL 858 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 L L+ Q+HL A +L +AL+ G+ + +V +P TPLE R+ ++E L Sbjct: 859 PLLLKPDQKHLAADVAIVQLEQALTAALGNPRRVQVVIGSDPKRETPLELRKRFHQELLQ 918 Query: 613 QARESIIADNNIQTLRRFFDAELDEESI 640 QA++S+I D+N+Q L + AELD +++ Sbjct: 919 QAQQSLIKDDNVQWLIQRLGAELDTDTL 946 >UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0B1_9SPHI Length = 575 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 215/448 (47%), Gaps = 3/448 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ V ARK+RP TF VVGQ H+ T L N + ++ A+LF G RGVGKT+ AR+LAK Sbjct: 3 NFVVSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKT 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T CG C++C + +++ E+DAAS V+D R+L+D V+Y P G+ Sbjct: 63 INCLTPTEDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQSGKR 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA LKTLEEPPE+V F+LATT+ K+ TILSRC F K ++V Sbjct: 123 KVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRIEV 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + + L +I +E I E AL L+A+ A+G LRDALSL D D ++ Q+V Sbjct: 183 KDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSADRHITYQSVVK 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 L LD D + +A++ + V+ +E +G + + + L + M + Sbjct: 243 NLHILDHDYYFKITDALLAQDMPLVLLYFDEILRKGFDGHIFIAGLGAHLRNVMMCKDPA 302 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L ++ R E A+ + + + + R VE+ L++ Sbjct: 303 TVKLLEVSEKVKQRFAEQAQNASASFLLSALNLANDCDLHYKSSKNPRFFVELVLMKMAN 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + V P P T V Q S QQ P + + Sbjct: 363 LNRVIDWAQNPVEIAGQPPADPEKKKPETNVAEQNNSHQQQQAPPPAKMSLEYTKKENPK 422 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAA 446 + + + +N Sbjct: 423 TPVIPNKPDVTLKVDTSNGSVQASDNTP 450 >UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 Tax=Proteobacteria RepID=A0KY06_SHESA Length = 1040 Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 246/549 (44%), Positives = 320/549 (58%), Gaps = 2/549 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V + + + T P V +T Q L Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERDSQTLP 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + KSE A++ L ++ D + A ++ + + Sbjct: 419 QAAISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQAHSQGFG 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + K E +A + + + Sbjct: 479 ANAETVSRTEALSTPEAKVDSSAESNSVSMPASNIDAEHNQAATVDTASVDQGPSPATLT 538 Query: 541 LNAWKEESD 549 D Sbjct: 539 EPVALSLDD 547 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 108/299 (36%), Gaps = 1/299 (0%) Query: 342 APDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 + ++ + E + QS P + A Sbjct: 722 SIKPQVANNASDNEFELPFDDDFEAELHLESQSNVTPTPPLDPNDRPPWEEAPVAAMDET 781 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 P Q + V+ A + + T A+ + A Sbjct: 782 HAPAASVNLQTESPVAAQTAVEHLGAAPVAAQISPTDREATRVVQALEQAAGQESEPATQ 841 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 P + + T P QQ V + + LA + Sbjct: 842 SPEPNTPQQPQAKELTQPKTQPQTQQPASVQSQSSETVQPTSSTALALAQSITGHP-LDL 900 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG 581 W ++ L + V Q+A+N+ + N + L L+ Q+HL A ++L +AL+ G Sbjct: 901 HWYKLMASLEIGGRVRQLAVNSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALG 960 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + ++ +V +PA TPLE R+ ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 961 NPRQVEVVIGTDPARETPLEMRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1019 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 133/425 (31%), Positives = 227/425 (53%), Gaps = 7/425 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+V+ARK+RPQTF +V+GQEH+ ++ ++ +I HAYLFSG GVGKTS+AR++AK Sbjct: 4 NYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC G T PCGVC +C +IE G +D+IEID AS +E+ R +++NV+ +P G++K Sbjct: 64 LNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH ++ +FNALLKTLEEPP HV F+LATT+ +++ TI SRC Q+ K+L +E Sbjct: 124 VYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSLGIE 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSA 239 + L+ IL++E+I ++ A+ L+A+ A GS+RD+ ++ ++ IA + +++ V+A Sbjct: 184 DLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVNA 243 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + M+E + + + + ++ + ++ + + M++ Sbjct: 244 VVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIKSGI 303 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM---TLL 354 L ++ A +I+ +L + + A + R EM LL Sbjct: 304 DDIKLLEITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEMRMLLLL 363 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + + S V S A P P+ + Sbjct: 364 NTDNLIRPVDIISSNMQSVSSVSVNEDYGFESVSNNNNASSNNASAVNQPKPQYDVPLNP 423 Query: 415 ARQQL 419 ++ Sbjct: 424 NDKRR 428 >UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 Tax=Exiguobacterium RepID=B1YGC8_EXIS2 Length = 561 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 162/556 (29%), Positives = 263/556 (47%), Gaps = 10/556 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ F +VVGQ H+ + N L R+ HAYLFSG RG GKTS+A+++AK Sbjct: 1 MAYQALYRVYRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C CR I +G D+ EIDAAS V++ R++ D V+Y P+ + Sbjct: 61 AINCEQAPVNEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYPPSEAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP H F+LATT+P K+P TI+SRC +F +K +V Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ ++++IL+++ I + AL+L+ARAA+G +RDALSL DQA+A +G ++ AV + Sbjct: 181 DQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFSNGDLTDDAVLEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++D+ L++ A+ ++++ + + G + + + +++ +++ SP Sbjct: 241 TGAVEDEALLAVANALQAHQVDQLLQTLEKMQRAGKDLKRFVEDLVFFYRDTLLLKTSPT 300 Query: 301 AL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ + A + TI + L ++++ R+ VE+ ++ Sbjct: 301 AVDLLERARPTEAFKTFVETIETEACFHIIEQLHDCQQQMRLTNHPRVLVEIAFIQIAEQ 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + ++ + T VP P Q P + +A + Sbjct: 361 GRTTGQIMQSLQQEVRELKEQMHQLKVTGVPAAE-GTPAQQPAKRKQARPTVRIAKERIR 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q + A KA+ E A + + S W Sbjct: 420 QMLSRAEKAQLLEIQERWDAILKLILKQDGPIYSLVHESKPVLCSEDTLLIEFDNGKGWH 479 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 E V T + + +E K AI + W ++ + + Sbjct: 480 F--------EQVMTNERTRFVIEEALFEVCGVKRQILAILDNDWKELKAEFVAKRNSSNI 531 Query: 540 ALNAWKEESDNAVCLH 555 ES+ L Sbjct: 532 EEKEVAVESEEDRLLS 547 >UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C4ZNJ5_THASP Length = 716 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 214/517 (41%), Positives = 289/517 (55%), Gaps = 2/517 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP++F +VGQEHV+ AL + L+ GR+HHA+LF+GTRGVGKT+I+R+LAK Sbjct: 1 MSYQVLARKWRPKSFGTLVGQEHVVRALTHALATGRLHHAWLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITA PCG+CD CR I+ RF D +E+DAAS VE+ LLD YAP +GRF Sbjct: 61 ALNCETGITAEPCGICDACRAIDADRFPDYVEMDAASNRGVEEMAALLDKAVYAPVQGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L IL E +A EP AL+ LA+AA GS+RDALSL DQAIA G G+V + VS M Sbjct: 181 GHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAIAHGAGRVEEEQVSHM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ DD ++++A+ + ++A+ + AR + ++A L + L+HR+A+ Q +PA Sbjct: 241 LGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQALATLVHRVALAQYAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +++ R+ +QL YQ + GR ELP APD G MTLLR AF Sbjct: 301 AIADEL--ERARILGYVERFDAEFLQLAYQVAVHGRDELPLAPDDYTGFTMTLLRLHAFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P S P ++ + A Sbjct: 359 PEQPAALGGPGVPSGPDAGRARAPALAAGGPAESGRAAESGVPAEVPARTVASAGIAGPA 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A ++ A + + V AA A+ + + + + R + Sbjct: 419 PAAVPAPAAGADAAIPSAQQTVLEAAAPASMQPGSVPAAQQAVAPAPASAPPRRSAREEH 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + L E + EA Sbjct: 479 AVQPARAAPASVQDVPPWEDLPPEAYADSDLPPPREA 515 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 96/283 (33%), Gaps = 17/283 (6%) Query: 377 PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAA 436 T + QP S P V ++ + ++ VQ A A S Sbjct: 435 SAQQTVLEAAAPASMQPGSVPAAQQAVAPAPASAPPRRSAREEHAVQPARAAPASVQDVP 494 Query: 437 TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKA 496 A + + + A A A P + Sbjct: 495 PWEDLPPEAYADSDLPPPREARNGHDEAYAASAGAHTGAISRARPEPRGGGARRAEEVPS 554 Query: 497 LKKALEHEKTPELAAKLAAEAIER-------------DPWAAQVSQLSLPKLVEQVALNA 543 L + PE A AA + W + L L LV ++A + Sbjct: 555 RSAPLPAVRAPEPATSPAAPTQDAPAASGDAAALLALGDWRGLIRALGLGGLVRELAQHC 614 Query: 544 -WKEESDNAVCLHLRSSQRHLN--NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 W E D + L L ++ RHL NRGA ++L + L G T+ + I D +TP Sbjct: 615 EWVECGDGVLQLRLSTAHRHLLDMNRGAVERLQDVLCAALGRTLAVRIAIGDISG-QTPA 673 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + + + A+A ++ AD ++ L FDA L E +++P+ Sbjct: 674 QRDAIERQVRHAEAVAALEADPFVRELIERFDATLVENTVKPL 716 >UniRef50_C7I1D0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thiomonas intermedia K12 RepID=C7I1D0_THIIN Length = 612 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 235/649 (36%), Positives = 324/649 (49%), Gaps = 52/649 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ LARKWRP++FA +VGQ+HV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MTSVALARKWRPKSFASLVGQDHVVRALTHALDHDRLHHAYLFTGTRGVGKTTVSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC + G+T+ PCGVC C EI+ GRFVD IE+DAAS VED LL+ Y P Sbjct: 61 ALNCTGPDGQGGVTSQPCGVCPACTEIDAGRFVDYIELDAASNRGVEDMTTLLEQAVYKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHMLS H+FNA+LKTLEEPP++VKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLSNHAFNAMLKTLEEPPDYVKFVLATTDPQKVPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+ +L E++ + AL+L+ARAA GS+RDALSLTDQA+A G+V T+ Sbjct: 181 KQMMPGAIVGHLQQVLQAENVPADDAALRLIARAAHGSMRDALSLTDQALAYCAGRVETE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLGT+D L +++A+ +G ++ + ARG+ + A L E+ LL IA++ Sbjct: 241 AVQQMLGTVDRSDLLLILQALASQDGVALIHQADALEARGLSFGAALEELAALLQTIALL 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 QL P A D + LA + P +QL Y T+L GR EL APD R G MTLLR Sbjct: 301 QLVPQAADADDP-QHEALVALAAQLSPELVQLAYTTVLHGRNELSLAPDDRTGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P + P +P A A +P Q A Q+ T Q A Sbjct: 360 LLAFAPVIAGSVPSLPPGGLALPKAAAPASPPSQSAAAQVAAQREQPATKSATPVQTAAK 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + P A P + A + + Sbjct: 420 AMPRTAATLSAPLAPAAPVLAAEEAPATSYAAKPEPQTQPQPTPPRPADIK--------- 470 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP-K 534 ++ W V +L +P Sbjct: 471 ---------------------------------PPLQITPHIASDTDWPTLVQRLDVPAG 497 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 L +A + L LR L G+ KL A+ + G + L + Sbjct: 498 LPRALAQQSELVAMQGMDWL-LRVPNEQLTRAGSLDKLQTAVRLALGQDIVLRAEAGEVT 556 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + ++ + A A +I D +Q L A++ S++P+ Sbjct: 557 --DSVMQRDARAKAQAQADAEAAIRNDPLVQQLMHDLGAQIVPGSLKPM 603 >UniRef50_B1WS93 DNA polymerase III gamma and tau subunits n=6 Tax=Cyanobacteria RepID=B1WS93_CYAA5 Length = 683 Score = 330 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 181/644 (28%), Positives = 293/644 (45%), Gaps = 12/644 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L+N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC TA+PCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPPE V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +E + L I +E+I E AL L+A+ A G LRDA SL DQ G ++ + V Sbjct: 183 LEAMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGG-ITPEKVWD 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + LSL++A+ N E V+ + RG E +L + + + + +P Sbjct: 242 LVGAVPERDLLSLLKAINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAP 301 Query: 300 AALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A I Q L +L R+ +E+TLL L Sbjct: 302 TRSDLVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + + QS + + + S+ + Sbjct: 362 PDACIAEVIVQSSNIPTQTKNNNNESKPKALPQQKTQSNIVEKSSQDKIQPLSKPNQSVT 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + E + + + + + + + +K+ Sbjct: 422 KTSETPINHDDIDLEGMWQLVLNKLPLLSSALIKQHGYLISYKQTVATV-GIKSKQLLKA 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + P ++ +K L+ + + K +I+ Q + +LPK + Sbjct: 481 AQDKLPQIESAFQEVVGHKVKVNLQVGSSSPVTQKSHRSSIKPPSSYPQTNHSNLPKNEQ 540 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL-TIVEDDNPAV 596 + N K +D + S + NN Q + + ++ + + + I D+ Sbjct: 541 TLNNNNHKNLNDEP---AITSKTDNSNNNHEQSEESSSIPEISTTQDNIDNIEVSDDKIQ 597 Query: 597 RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 + + + E + + I +NN LR + EL E S+ Sbjct: 598 KAAEQLAKFFKGEVINDYEDFIQKENNSSDLRD--NIELSENSL 639 >UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Tax=Bacilli RepID=Q4L3D4_STAHJ Length = 571 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 211/382 (55%), Gaps = 10/382 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQ+F DVVGQEHV L N +S G+ HAY+FSG RG GKTSIA++ AK Sbjct: 1 MNYQALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C C+ I QG D+IEIDAAS V++ R++ D V+YAP+ ++ Sbjct: 61 AINCLNPQDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H F+LATT+P K+P TI+SR +F KA+ Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI +L + E+ + ++ AL+ +A+A+EG +RDALS+ DQAIA GD ++ Q + Sbjct: 181 EQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALDV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++D+ L + +++ N + ++ + G E L+ +M+ + M Sbjct: 241 TGSVDEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIYFVRDTIM-----N 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 N+ A + M + + + ++ ++ + E+ L++ Sbjct: 296 KTVNNHAEFDALM-----NFDLDMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMV 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTA 382 P V A Sbjct: 351 KSQPDTVTNVATTQVASQPNNE 372 >UniRef50_B8HBY1 DNA polymerase III, subunits gamma and tau n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HBY1_ARTCA Length = 1202 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 155/574 (27%), Positives = 240/574 (41%), Gaps = 7/574 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 6 ALYRRYRPDSFADVIGQEHVTGPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNC 65 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ +G +D+IEIDAAS V+D RDL + YAP R R+K+ Sbjct: 66 AEGPTDTPCGVCPSCVELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVRDRYKI 125 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + E Sbjct: 126 FIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEP 185 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A +G + + A+L Sbjct: 186 LMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPNGLDYELAVALL 245 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +VEA+ ++ V ++ G + + ++L + +VQ P + Sbjct: 246 GYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQAMPES 305 Query: 302 LGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A R++ A + ++ E+ A R+ +E+ R L Sbjct: 306 AQVILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELLCARIL 365 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + Q S A + P + + A Q Sbjct: 366 LPSSEQNERGIAARIDRVERRLNYSGHDAGAPAGQGASGTLGAGSAPHTPAAAAIPVAAQ 425 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 G + A + A+ A A + APA + + Sbjct: 426 AAPAAGGQASEPHAPAAQSPSAQDAAGQAASVQAPAEQAPAGQAQVPQAASAPAPADGPQ 485 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + + + A P A + E +P A + Sbjct: 486 GQTPRAPLASAQPQAGPDAPSRPATGESSPRTAHGAPGAGTASTTDGRPPLTAPRVSTND 545 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQK 571 E + ++ Sbjct: 546 WPVDQPGNERHPGGITSPVQPGAGQPAPESGPAA 579 >UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LV54_9FIRM Length = 691 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 160/436 (36%), Positives = 224/436 (51%), Gaps = 1/436 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R+WRP +F D+VGQ V L++ +S GRI HAYLFSG RG GKTS A++LAK Sbjct: 28 MAYIALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAK 87 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVC NC +I G +D+ EIDAAS +++ RDL + V++ PA GR+ Sbjct: 88 SLNCEKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRY 147 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP HV F+LATT+P K+P TI SRC +F + + V Sbjct: 148 KVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITV 207 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L ++ E I E AL+L+AR A+G +RDALSL DQ + ++ V Sbjct: 208 EEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEEN 267 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ E V+ I E A G + LL E+ L + + + + A Sbjct: 268 LGLIGHEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAELTIHLRSLMIYEAAGA 327 Query: 301 ALGNDMAAIE-LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++A + E I L EL + P R+ +E+ LL Sbjct: 328 LAALNLADDTGAALEEQKALFTQAQIMAMIARLHEAMAELRWTPQPRITLEVALLSLCRE 387 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + P + AP A Q + + + Sbjct: 388 NVEDGAEGAPAPTPAAAPAPAEAARVARLEAELAALKAQLSAQPVRAAAPAASPLPTARK 447 Query: 420 QRVQGATKAKKSEPAA 435 + +A S A Sbjct: 448 RAASRTNEAASSGTPA 463 >UniRef50_A4E9Y5 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4E9Y5_9ACTN Length = 825 Score = 329 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 166/639 (25%), Positives = 266/639 (41%), Gaps = 39/639 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP TF VVGQ+H+++ L + ++ GR+ HAYLF G RG GKT++AR+LAK L Sbjct: 2 ESLYRKYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALL 61 Query: 64 CETGITAT--------PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYA 114 C A P G C+ C I +G D+ E+DAASRT V++ R+ ++++V +A Sbjct: 62 CRNAEAARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGVDNVREEIINSVNFA 121 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P RG++K+Y+IDEVHML+ +FNALLKTLEEPP HV F+L TTDPQK+ TILSRC +F Sbjct: 122 PVRGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRCQRFD 181 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + E I H+L ++ +E ++ AL ++AR A+G +RDALS +Q G+G V Sbjct: 182 FHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALSTLEQLSVFGNGSVHA 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 ++LG + D A+ + + + LI G + L +++ + + + Sbjct: 242 DDARSLLGEVSDQILGEFSRAIADRDVAELYGLIRAQVEEGNDLLELTRDLVAHVRDVYV 301 Query: 295 VQLSPAALGND-----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ A A P + L E+ A D R+ + Sbjct: 302 ACVAGARAELFEGGSEQAEALAAEAAAFGEHPADRLARVLTVLDDAALEMRGASDVRLVL 361 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E+ R + + + + + Q + P T Sbjct: 362 EIACTRLARPEADLTIEALAERVARLEAMIANGAVPASVAAAQAAAPAASVPAAAQQPT- 420 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 A + A A + +R A+V A + Sbjct: 421 ----------LISGARAAAPAASAAPAATSARQGGMPWDRGAAVPAAQPAPKSAAPAPAP 470 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 A + A V+ K A + + WA V + Sbjct: 471 RPVTPAPQPVAAPASAPAASTVSVSKPNNAAQVAAAGAAETPAVEDAGELQRKWAEVVER 530 Query: 530 LSLPKLVEQ-VALNAWKEESDNA-VCLHLRS----SQRHLNNRGAQQKLAEALSMLKGST 583 + + + LNA D + + + + + + L Q + + + G Sbjct: 531 VKARQASYAGLLLNARATADDGSKLTVSFPAGSTFAIKMLGRADTQSVVLPTVCAVFGRR 590 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 + V D TP +EE AR ++ AD Sbjct: 591 -TVDYVLD---GGGTPAPQ----HEEHSPSARAAVSADP 621 >UniRef50_B1XPA0 DNA-directed DNA polymerase III chain dnaX n=2 Tax=Cyanobacteria RepID=B1XPA0_SYNP2 Length = 742 Score = 329 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 166/632 (26%), Positives = 258/632 (40%), Gaps = 44/632 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFA +VGQE + T L+N L RI AYLFSG RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L I + E+I ++ L+A+ A G LRDA ++ G+++ V Sbjct: 181 PLDAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDA-ESLLDQLSLLSGEITPDKVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++ + + E V+ RG E +L + + + + + Sbjct: 240 DLVGAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + + A + I Q L +L R+ +E+TLL Sbjct: 300 PQRGDLIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + T T P P P T Sbjct: 360 LPAAFGQTQTTRTATTPLNTQINLQTQPTATPPTSPPPPQDIPHPFGETPPAT-----NG 414 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + V E A +P Sbjct: 415 HGSGTPPSPVDTQVHQVPPKPEVPQVPAPVPEAKAIAKAPPSQDVIP------------- 461 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T + + P + + + W V QL L Sbjct: 462 ---------------PTVQPTEPPPLSPSPPATTSPTISALEREELWQGIVRQLPLLSQS 506 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE------ 590 + +D++ + ++S+ + +L A + G+ +++T+ Sbjct: 507 LFRDHGKLLQLTDHSALIGIKSANLLKIAKNKTLQLEAAFEKICGNPLKVTLQVGHGLEN 566 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 TP+ A ++ A+ I Sbjct: 567 GQGGTSVTPILSTPAPAPTVISPAQNPIEMPP 598 >UniRef50_B6WWA6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWA6_9DELT Length = 670 Score = 329 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 183/656 (27%), Positives = 272/656 (41%), Gaps = 38/656 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA K+RPQTFA V GQ+ V L+ + R+ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLAAKYRPQTFAQVAGQDMVKAVLSRAAAEDRVAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC CD CR+I QG VD+ EID AS VED R L +N+ YAP GR+ Sbjct: 61 ALNCRHAPGPEPCNQCDQCRKITQGSHVDVTEIDGASNNSVEDARALRENIGYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HMLSR +FNALLKTLEEPP V F+ ATT+ K P+TI+SRC F + L Sbjct: 121 KVFIIDEAHMLSRSAFNALLKTLEEPPARVVFIFATTEAHKFPITIVSRCQHFVFRHLGE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +LN+E++ E A++L+AR A GS+RD++SL DQ +A G +++ + Sbjct: 181 DALVQHLSQVLNKENVPFEEGAVRLIARRAAGSVRDSMSLLDQTLALGGDNLTSAVTREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + L +A+ + V L +G++ + E+ G L + +++ Sbjct: 241 LGLAGQELSADLFDALHARDCAAVSQLCAGLFRQGVDIGFFVRELAGHLRDLFLLRQGGD 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+ L + LA + +Q +L ++ + P+ +E+ LL Sbjct: 301 AVAPTLGLPGEEILFWQGLAPRFSAGHLHAAWQMVLDAQRGIVQNPEPAAALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET-------TS 410 +PL + APV + P P A V P + Sbjct: 361 LLPQLLPLERMDSAPAPAAPVQGHPGHDRQEGSPLPPRDMGHAAPVQAPAARAREHGTPA 420 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + AA + +++ A + A R A VT+ + E Sbjct: 421 EKSAAAGSSEPAPEPAPSRRPGSCARPQREAPARQATSRPARVTETPAPKAAQPRAEAPA 480 Query: 471 AKKEAYRWKATTPVMQQKEVVA--------------------TPKALKKALEHEKTPELA 510 + ++ A P Sbjct: 481 HPEHVGPSESGMIEADDIPAAAPIIPVAPARPAAPAAPVAPAAPATPPVPPAAPAVETRP 540 Query: 511 AKLAAEAIERDPWAAQ----VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN-- 564 AA A R W A +L + Q+ L S CL L L Sbjct: 541 TAPAAAAGFRPDWQAFCDFCARRLENGEAAPQLHLLRQLRASWEPDCLRLTPRAETLLHQ 600 Query: 565 NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + +L +AL+ L + RT E + QA ++ Sbjct: 601 TEKQRPQLEQALAAW--GAGHLRLEFVAPRQARTEAELIEEFRNRPEMQACLRLLN 654 >UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunits gamma/tau dnaX n=2 Tax=Parachlamydiaceae RepID=Q6MDZ7_PARUW Length = 522 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 164/522 (31%), Positives = 256/522 (49%), Gaps = 5/522 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARK+RPQTF +V GQE V+T L N + R+ AYLF G+RG GKT++AR+ A Sbjct: 1 MSEYQVIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC+ PC C +CREI G +D++EID AS +ED R + + V YA G Sbjct: 61 KAINCQNSTEDFEPCNQCTSCREITSGSSLDVLEIDGASHRGIEDIRQINETVGYAATSG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHML++ +FNALLKTLEEPP VKF+ ATT+ K+ TILSRC +F+L + Sbjct: 121 QYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + QI +L+ I ++ I E ALQLLA AEG LRDA SL DQ +A +G+++ V Sbjct: 181 PLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLFDQIVAFSEGKINAATVQ 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++LG + + L A E N + + A G + + ++ I ++QL+ Sbjct: 241 SILGLMPREAYFELDLAGKEGNFVKAFEIAYRIFAEGKDLNHFIEGLIDHFRHILLIQLA 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + L + A L+ +++ + ++ +E LL Sbjct: 301 GITSPLLTISPKEKQFYERAAHLYTQEQCLDLIDYLIESAQQIRFTHSGKIALEAILLHV 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV-PPQPQSAPQQAPTVPLPETTSQVLAA 415 + H R+P+ + A + + V PP +S PQ + + + Sbjct: 361 IRSHFRLPIEVLVQRLGELEQMLGEASLVNSSVFPPLSKSTPQSSLSTEVKNPPLTPPVP 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + Q T + + ++ A + + + + V P P+ + + ++ Sbjct: 421 LTNNKPSQNLTTSPIEKNLNSSTATSLLSPSTNNCSLFDHFVSEDPTPTQSDLGRSTQKL 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA 517 + + V + TP L EL KL +A Sbjct: 481 PNKDSPSLVAKLNGDNPTPVHQYDTLFQFAAIELEGKLQRKA 522 >UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobacteria RepID=Q47HW9_DECAR Length = 537 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 238/532 (44%), Positives = 315/532 (59%), Gaps = 6/532 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F+ +VGQEHV+ AL + LS R+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRNFSTLVGQEHVVRALTHALSEQRLHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGITATPCG C C+EI+ GRFVDL+E+DAA+ T+V++ R LL+N YAP RGRF Sbjct: 61 SLNCETGITATPCGTCSACQEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+LK + V Sbjct: 121 KVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L HIL E I + AL L+AR+A GS+RDALSL DQAIA G G+V V +M Sbjct: 181 LAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLLDQAIAHGAGRVEEAQVRSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+D D +++EA+ A ++ + + R + + A L E+ LL R+ + Q P Sbjct: 241 LGTVDQDYLFTILEALHGAEPSALLQVAADLGIRSLSFSAALQELGALLTRLQIAQCVPG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ +D R++ LA + P +QL YQ + GR EL APD G MTLLR F Sbjct: 301 AIDDDEPER-DRLKGLAAALSPEFVQLAYQIVNAGRNELAAAPDEYAGFVMTLLRLYTFR 359 Query: 361 PRM--PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P + VPR + A P AV + S P+ LP S + Q Sbjct: 360 PSTVADVVGAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPVIIPKLPPIASGEMDWHQI 419 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + A++ R + N L RL+ +Q RP P L++A + Sbjct: 420 VASLSLSGLARELAQNCELR-QLSENQCLLRLSPAQGHLQMRPNPDRLQQALSDFFGRPL 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + Q TP E+ A +A + RD + + L Sbjct: 479 QVRIELAQN--ENVTPAETVGRQRQEQQERAATAIAQDTFVRDVIESFDASL 528 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 71/436 (16%), Positives = 139/436 (31%), Gaps = 10/436 (2%) Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 + L + A+ + V + L + ++++ + E E V ++ + Sbjct: 103 EMRQLLENAVYAPTRGRFKVYVIDEVHMLSNSAFNAMLKTLEEP-PEHVKFILATTDPQK 161 Query: 276 IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 I L + L ++ ++ ++ A + + + L + Sbjct: 162 IPVTVLSRCLQFNLKQMPVLAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLL 221 Query: 336 RKELPYAP------DRRMGVEMTLLRAL-AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ 388 + + + R + L + EP Q A + ++ Sbjct: 222 DQAIAHGAGRVEEAQVRSMLGTVDQDYLFTILEALHGAEPSALLQVAADLGIRSLSFSAA 281 Query: 389 VPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALE 448 + + +P R +L+ + A + + A N A Sbjct: 282 LQELGALLTRLQIAQCVPGAIDDDEPERDRLKGLAAALSPEFVQLAYQIVNAGRNELAAA 341 Query: 449 RLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 + + + A + V A + + P Sbjct: 342 PDEYAGFVMTLLRLYTFRPSTVADVVGAAVPRVNAAGAMPKAVRATPATQSRGDSIPEPV 401 Query: 509 LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRG 567 + KL A W V+ LSL L ++A N ++ S+N L L +Q HL R Sbjct: 402 IIPKLPPIASGEMDWHQIVASLSLSGLARELAQNCELRQLSENQCLLRLSPAQGHLQMRP 461 Query: 568 AQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTL 627 +L +ALS G +++ I N TP E +E+ +A +I D ++ + Sbjct: 462 NPDRLQQALSDFFGRPLQVRIELAQNEN-VTPAETVGRQRQEQQERAATAIAQDTFVRDV 520 Query: 628 RRFFDAELDEESIRPI 643 FDA L E SI+PI Sbjct: 521 IESFDASLVESSIKPI 536 >UniRef50_B6YRS0 DNA polymerase III gamma and tau subunit n=2 Tax=Bacteroidales RepID=B6YRS0_AZOPC Length = 471 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 128/411 (31%), Positives = 210/411 (51%), Gaps = 4/411 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y V AR++RP TF VVGQ ++T L N + ++ HAYLF G RGVGKT+ AR+ A Sbjct: 1 MSDYIVSARRYRPATFQSVVGQRPLITTLKNAIQNSKLAHAYLFCGPRGVGKTTCARIFA 60 Query: 60 KGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 K +NC C CD C+ + R ++ E+DAAS VE+ R L + ++ P G Sbjct: 61 KTINCTCLKEDGEACNECDFCQSFNENRSHNIYELDAASNNSVENIRFLTEQMRIPPQIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KVY+IDEVHMLS +FNA LKTLEEPP H F+LATT+ K+ TILSRC + + Sbjct: 121 HYKVYIIDEVHMLSTSAFNAFLKTLEEPPHHAMFILATTEKYKIIPTILSRCQIYDFSRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + I LE+I E+I+ E AL ++A+ A+G +RDALS+ D+ + ++ Q+V Sbjct: 181 TINDIVEYLEYIAQNENISTEREALNIIAQKADGGMRDALSIFDRVASFSANNITYQSVI 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L LD + LVEA++ + + ++N+ +G + + ++V + I + + Sbjct: 241 ENLNVLDYEYYFRLVEAILIGDVSCSLLILNKIIRKGFDLQQVIVGLSDFFRDIMVCKDP 300 Query: 299 PAALGNDMAA--IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ I + L++ + + Y+ ++R+ VE+ L+R Sbjct: 301 QTIVLFEIGDSAIREKYLNLSKQCTSDFLYNALELSNECDLNYRYSKNKRLLVELLLIRL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 ++ + ++ P+ + S + +P+ Sbjct: 361 CQLCCQLLTDGKDKKKRVIEPLIAKEKNVSVKQEQVFVSEKKSIIESEIPD 411 >UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C6MGX6_9PROT Length = 537 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 228/536 (42%), Positives = 316/536 (58%), Gaps = 13/536 (2%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS QVLARKWRP+ F ++ GQEHV+ AL N L R+HHAYL +GTRGVGKT+IAR+LA Sbjct: 1 MSQTQVLARKWRPRNFTELTGQEHVVRALTNALEQNRLHHAYLLTGTRGVGKTTIARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCETGITATPCG C C +I+ G F+DL+E+DAAS T+V++ R+LL+N YAP GR Sbjct: 61 KSLNCETGITATPCGTCTTCVQIDSGSFIDLVELDAASNTQVDNMRELLENALYAPTCGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ +FNA+LKTLEEPP HVKF+LATTD QK+P+T+LSRCLQF+LK + Sbjct: 121 YKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSRCLQFNLKQIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 QI L+ IL +E I + +LQL+ARAA+GS+RDALSL DQAIA G G++ +V Sbjct: 181 QPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLLDQAIAFGAGKIEEASVRD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG +D L++A+ + NG ++++L +E AR + ++ L ++ +LHRIA+ Q P Sbjct: 241 MLGIIDHSYLFDLLDALTQKNGLKLLSLADEMEARCLSFDCALQDLAVILHRIALAQAIP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ALG D+ R+ LA+ + P DIQL+YQ L GR +L APD G MTLLR L F Sbjct: 301 QALGEDIPDYI-RINALAKILAPDDIQLFYQIALHGRGDLSLAPDEYAGFTMTLLRMLTF 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P E V Q V+ ++ +V +PQ P P VP + QQL Sbjct: 360 MP-----EDLVAHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVPADNSDLPWPQLVQQL 414 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + A + A A + E + + A + Sbjct: 415 KLAGMAKMLAQHSEAKILSADKIELCVPEVHKHLL------EKKYQDKIQSALNTFFGKL 468 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 TP A+++ E EK + A + + + ++ ++L +P + Sbjct: 469 VALDFFVGSITGLTPAAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAKLIIPSI 524 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 2/189 (1%) Query: 456 RVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAA 515 + + + + + Sbjct: 340 SLAPDEYAGFTMTLLRMLTFMPEDLVAHQQPPQVSSISIPQSVEVGHEPQPIPDITPPVP 399 Query: 516 EAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRSSQRHLNNRGAQQKLAE 574 PW V QL L + + +A ++ + S + + L + +HL + Q K+ Sbjct: 400 ADNSDLPWPQLVQQLKLAGMAKMLAQHSEAKILSADKIELCVPEVHKHLLEKKYQDKIQS 459 Query: 575 ALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAE 634 AL+ G V L + TP +Q EEK AQA +I D +Q L FDA+ Sbjct: 460 ALNTFFGKLVALDFFVGSITGL-TPAAIQQRAEEEKQAQAIAAIEKDPVVQELIEQFDAK 518 Query: 635 LDEESIRPI 643 L SI+PI Sbjct: 519 LIIPSIKPI 527 >UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=2 Tax=Psychrobacter RepID=A5WFF8_PSYWF Length = 751 Score = 328 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 2/492 (0%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP+ F ++VGQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L Sbjct: 1 MSQQYQVLARKYRPKNFHELVGQSHVSKALINAIDHNRLHHAYLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +K LNCETG+T+TPCGVC +C I+QGRF+DLIEIDAASRTKVEDTR+L+DNV YAP +G Sbjct: 61 SKCLNCETGVTSTPCGVCSSCVAIDQGRFIDLIEIDAASRTKVEDTRELIDNVPYAPTQG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 121 RYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + + ++L +E+I AL LA AA+GS+RDALSLTDQAIA G G+++ + V+ Sbjct: 181 PQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAFGQGRLTDETVN 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG +D +SL+ + + N + A I + A+ ++ ++ + LLH+IAMVQL Sbjct: 241 DMLGLIDSADLISLLLDIYQGNAPALSAHIEQMRAQLVDAGSMFDGLADLLHQIAMVQLL 300 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P N ++ LA I P +QLYYQ ++ GR+++ A +EM LLR LA Sbjct: 301 PNVSLNVNDLQAQQITALAAQIGPDVLQLYYQIVIQGREQIKLANTPLQALEMCLLRLLA 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + A A + ++ A Q + ++ + Sbjct: 361 FRPLALNEVAVASSNTPAHKASSDQPASIEMQAPNPHADQAEDYLTEQALSATSTESMAD 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + ++ + +L+S + + + A Sbjct: 421 TNIEPQSPNVNDADINNTANIDVKTHQDDYQLSSTSGADINPASLNETDFATPLASEPTA 480 Query: 479 KATTPVMQQKEV 490 + T P ++++ V Sbjct: 481 QDTRPQLEEQAV 492 >UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR83_9FIRM Length = 638 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 154/486 (31%), Positives = 226/486 (46%), Gaps = 2/486 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L RKWRP TF +++GQ+H+ + R+ HAYLFSG RG GKTS+AR+LAK Sbjct: 1 MAYLSLYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I G +D+ EID AS V++ R L ++V+ P G Sbjct: 61 AVNCLDLKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNK 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+P+TILSRC ++ + V Sbjct: 121 KVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYEFHRISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSA 239 I+ L HI E H++ P A L+A AEG LRDALSL DQ AS ++S + V Sbjct: 181 NDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAGNELSAEIVYD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D +Q + L +V + L + G E A+L ++L I + +++P Sbjct: 241 LLGLTDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSIMICKVNP 300 Query: 300 AA-LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + +++ A+ + + + +L E + RM EM LLR Sbjct: 301 NAPELSAYGNKISVIQKDAQELSDAYLDALFDSLHHSFSEANRSSSPRMSAEMGLLRLCR 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 L E + + + T + A +P + V Sbjct: 361 LRGSQALDSLEERITALEKNVSVLMKSSTLPQTETIPAAPSPAILPPTISIPLVTPTALT 420 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 T S A+ + + E+ A+ Sbjct: 421 PAPAASTTTCPDSPKEVVPPPPADKTPVKMEPATKSKPSLPCKPKKSPEEKKAETSHEIG 480 Query: 479 KATTPV 484 + Sbjct: 481 ETLLDP 486 >UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37DC8 Length = 539 Score = 328 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 141/460 (30%), Positives = 214/460 (46%), Gaps = 4/460 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRP TF DV+ Q+ L N + G+ HAYLF+G+RG GKT+ AR+LAK + Sbjct: 2 YKALYRKWRPMTFDDVISQQQTTDTLKNQIMSGKTAHAYLFTGSRGTGKTTCARILAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC CD CR+ + G D++EIDAAS V++ RDL D Y P RG++K+ Sbjct: 62 NCRNMKDGNPCLECDICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLK +EEPP +VKF+LATT+ K+P TILSRC +F + + E Sbjct: 122 YIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSRCQRFDFRRIKPED 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L++I +E + ++A+ A+G +RDA+SL D+ + G ++ VSA G Sbjct: 182 IAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRC-SVGGEEIDEDVVSAAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D L+EA+ + + +++ + L E++ L I ++++SP Sbjct: 241 IAGRDYLFGLLEAINTGDTAKALSITASLYDMSKDIGRLCEELISQLRNIMLIKVSPDTA 300 Query: 303 GNDM---AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + A ++RELA + I + L + A +RR+ EM L++ Sbjct: 301 ESLIVCVAEEMQKLRELADSTELDTIMSHISILQECSSNMNRAMNRRVEFEMALIKLCGN 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + QQ P V + + Sbjct: 361 IRNTTEAIDNSEIYDKIKQLEDKIKNAPVQVQSGAPQQQQQPEVLTASSPPTEADPAPTV 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 S+ V A Sbjct: 421 DIKTLKPSDLIPCERWGEVLEEFKKVNPAVAGSLDGSVAA 460 >UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 Tax=Synechococcus RepID=Q2JLX3_SYNJB Length = 779 Score = 328 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 160/523 (30%), Positives = 250/523 (47%), Gaps = 6/523 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RPQ FADVVGQ V+ LAN + LGR+ AYLF G RG GKTS AR+LAK Sbjct: 6 NYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKS 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G T PC C CR I G +D++EIDAAS T V++ R+L++ Q+AP R+K Sbjct: 66 LNCEQGPTPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVNSRYK 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + ++ Sbjct: 126 VYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLD 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L I +E I P ALQL+A+ ++G LRDA L DQ G ++ +AV ++ Sbjct: 186 DMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLLE-GSITPEAVWDLV 244 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + + Q L+L++A++ + + V++ + RG E ALL ++ L + +V+ +P Sbjct: 245 GGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQ 304 Query: 302 LGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + +++ A + L ++ + ++ +E+ L + Sbjct: 305 RELVAVTDSTWAALQQRAPRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIAL---VDL 361 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 ++ +P + Q P +AP P + S V + Sbjct: 362 LGQLRPSMVAEDSAERSPFPALDLSPAPQRTPPDGTAPPAPAATISPSSPSTVGEIDELT 421 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + S+ A + E RP K + Sbjct: 422 VGPSASPAVASSQKADRATRTESSEQPREPARDAATVKLLRPHWDEFLKRLSPLTKALMG 481 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 + + E + K +E ++ E + + + P Sbjct: 482 SGHLHQETPEAITLAFPSKGLVEKVRSKEAELRSVLHNLLQRP 524 >UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 Tax=Burkholderia glumae BGR1 RepID=C5AFH6_BURGB Length = 861 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 228/526 (43%), Positives = 301/526 (57%), Gaps = 2/526 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE +A EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD + L++A+ ++G ++A+ +E A R + + L ++ GLLHRIA Q +PA Sbjct: 241 LGALDQTYMVRLLDAIASSDGPEILAIADEMALRSLSFSTALQDLAGLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAAD-LRRFAEALSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P P P+ S A Q Sbjct: 360 PAASGGAPVPGAAPAVAAGGRRAAAPVAPAGAGARDAAAHAMPPVAAAASARPAPAPVAQ 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A + P A A + A +R A + R + P+ ++A A Sbjct: 420 AAAEPPPAAVAAPRAVPPAAARDVATAKRPAELPVR-AEQARPAESDEAAAVAPRESAPD 478 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + + ++ AL TP E R Sbjct: 479 LADEPAESPLASQLESSDVALGAGPTPPAEPAAMLEPSLRADTPPM 524 Score = 107 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 65/213 (30%), Gaps = 5/213 (2%) Query: 432 EPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVV 491 A+P AA ++ P A PV Sbjct: 634 PTPRPRTAQPSRPAAAADPSAPPPWDDMPPDDYLPISADDHYGPPPDDGYLPVFDSSPDD 693 Query: 492 ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDN 550 + P A W + L+L + Q+A N+ Sbjct: 694 VRVAPQPAPAPADTRPLPPAIALDAIGYAGEWPQLAATLTLKGVAYQLAFNSELISAQGG 753 Query: 551 AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEK 610 + L + Q + KL AL+ G VE+ + PA RT ++ Sbjct: 754 VLKLAVPVPQ--YADAAQVVKLKTALAEALGKPVEVAVEVG--PARRTAAALDAVERAKR 809 Query: 611 LAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +A + I AD +Q L R F A + E S+RP+ Sbjct: 810 QREAEQEIGADPFVQQLIRDFGARIVEGSVRPV 842 >UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y576_9FIRM Length = 613 Score = 327 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 234/479 (48%), Gaps = 2/479 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L R +RP +F +VVGQ+H++T L N + +I HAYLF G RG GKT+IA+LLAK Sbjct: 1 MSYKALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C I+QG D++EIDAAS V++ R+L++ V+YAP GR+ Sbjct: 61 AVNCED-QQNAPCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKTLEEPP HV F+LATT+PQK+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ +L +EHI E AL+L+A+ A+G +RDALS+ DQ IA ++ V+ + Sbjct: 180 NEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQNHITAAHVNEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + +++ + + + ++ I +G++ + L +++ +L + + Sbjct: 240 YGITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIEILKECVIFIYTQD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + D+ L+ ++ A E+ +L+ +A Sbjct: 300 VTLLNKINETEANAIINGK-SSRDLLALIDILMETLEKYRTASSAASYFEVAVLKMMAEL 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + +P P ++ Q Q+ + +PE Sbjct: 359 DQSRRTAAVIPPVYSQPATAPSIPASPQASTGKPRPEVQSESTLMPEEADLTEDTLPLEM 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 +++ + V+ + +Q + + + + Sbjct: 419 MPPLPAPPEETGRVIQEKTVEVHPEFEIQPLDYEFVMQLLAGANKEMRMKDENQWKLID 477 >UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 Tax=Proteobacteria RepID=A3NA70_BURP6 Length = 826 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 220/490 (44%), Positives = 288/490 (58%), Gaps = 1/490 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ FA +VGQEHV+ AL + L GR+HHAYLF+GTRGVGKT+++R+ AK Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETG+T+ PCGVC CREI++GRFVD +E+DAAS V++ LL+ YAP RF Sbjct: 61 ALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNA+LKTLEEPP HVKF+LATTDPQK+PVT+LSRCLQF+LK + Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL EE IA EP+AL+LLARAA+GS+RDALSLTDQAIA +V+ AVS M Sbjct: 181 GHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD + L++A+ A+G +++A+ +E A R + + A L ++ LLHRIA Q +PA Sbjct: 241 LGTLDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ +R A + P +QLYYQ +GR EL APD G MTLLR LAF Sbjct: 301 SVLDEWPEAAD-LRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P SA + AAR + Sbjct: 360 PATTGGGAPAGGVPARVAGAAPKSGARAAAAVGASAVPAVTGATGAALAPKAAAARAATR 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A +A + A+ +R + A + Sbjct: 420 AEAPPAAPARPAAAERGDDASDGDAPVPAKANARASADSRCDERDAQPPADSGSASGAAS 479 Query: 481 TTPVMQQKEV 490 + P E Sbjct: 480 SAPPDTAFES 489 Score = 92.4 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 81/282 (28%), Gaps = 6/282 (2%) Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 P V R + A A + + A A + +V Sbjct: 534 PAAGAPVSRATGAAAALDVLRNAGMRVSSGRGAGAGAGAARPAAGPAASPTKPAPRAQVS 593 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 T ++ A + P + + P Sbjct: 594 VPTPRARAATGDVPPNGAARAEARSESRGAPPPWEDIPPDDYVPLSMDDGFIPPDDGFVP 653 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD-PWAAQVSQLSLPKLVEQVALN 542 V T L + +AI D W + L L + Q+A N Sbjct: 654 VFDSGPDDVRVAPKPAPAPPVDTRPLPEPIPLDAIGYDGEWPTLAASLPLKGVAYQLAFN 713 Query: 543 AWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + L + Q + KL AL+ G V++ + PA RT Sbjct: 714 SELTAADGGTLKLAVPVPQ--YADAAQVAKLKAALADALGKPVDVAVEVG--PARRTAAA 769 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 A ++ +A + + AD ++ L R F A + E SIRP+ Sbjct: 770 LAAAERAKRQREAEQEMSADPFVRQLLREFGASIVEGSIRPV 811 >UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT Length = 564 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 153/452 (33%), Positives = 223/452 (49%), Gaps = 3/452 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVL RKWRPQ F+DVVGQ V L N L GRI HAYLF+G+RG GKT+ A++LAK + Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAV 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C I+ G +D++EIDAAS VE+ R+L + + PA +++V Sbjct: 65 NCLSLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ KLP TILSRC +F +D E Sbjct: 125 YIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEV 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ + EE+ E A L+AR A+G +RDALSL DQ + +++ + VS G Sbjct: 185 IADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSS-EITLEVVSETAG 243 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ--LSPA 300 D SL + ++ NG + + I+E + L E+ G + +++ +P Sbjct: 244 LAGRDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFRNLMLLKTMKNPQ 303 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L +++ A L ++ + DRR+ +EM LL+ + Sbjct: 304 NLIVVSQDEYQKLQVQAEAFTLAGTIHAIDVLQAAKERMFRGFDRRVELEMALLKLCSPE 363 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + P P+T Q A + Sbjct: 364 LDESVDAILRRLARLEKQPRAVIPEQAEAAAPSIKPPAAPMESQRPQTKPQGTNAEPEGC 423 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLAS 452 + A +A +E L Sbjct: 424 GEEPAAEAADMPQEQEPPEDKKGPVDMEALQQ 455 >UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacillales RepID=C2H810_ENTFC Length = 581 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 252/583 (43%), Gaps = 9/583 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R WR Q F D+VGQ+ V L N + + HAYLF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ CR I G D+IEIDAAS VE+ R + D YAP + + Sbjct: 61 AINCPNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEP E V F+LATT+P K+P TI+SR +F K ++ Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I LE IL E I +EP AL ++AR+AEG +RDALS+ DQAI+ +G ++ + Sbjct: 181 ADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L D+ S + A V+ + +N+ A G E L +ML + M Q +P Sbjct: 241 TGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPN 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + I ELA+T+ + + L + E+ + + +E+ ++ Sbjct: 301 LVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLAQL- 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P +P ++ V + + Q +Q Sbjct: 360 PSASVPSAKMALADDQIVKQLQQEIKELRNEIKELRSNTGTVNTKVQPVQQTNHKKQTST 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + K A + E L Q + ++ A Sbjct: 420 YRVPTERVYKVLREATRQHLNQVKEVWEDLLMSLSVTQRAMLKASEPVAAGPTGLVIAFD 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 V Q+ + + A I R+ W + + L + E+ A Sbjct: 480 YEIVCQRAANDEELQLSVHNNLSRMIKDYAPDPV--YITRESWPE-LRKNYLTQAQEEGA 536 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 N++ E L Q ++ L GS Sbjct: 537 ENSFASEESEGEIELLPQEQ-----EVPEETLVVKAEEFFGSE 574 >UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 Tax=Lactobacillales RepID=A5VIC2_LACRD Length = 611 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 141/532 (26%), Positives = 235/532 (44%), Gaps = 3/532 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ F D+VGQ+ V L N + +I HAYLF+G RG GKTS A++ AK Sbjct: 1 MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RD+ D +YAP + + Sbjct: 61 AVNCHHSKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +V F+LATT+P K+P+TI+SR +F + + Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E +++++IL+++ + ++ +AL ++A AAEG +RDALS+ DQ ++ D +V + Sbjct: 181 EDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G++ + + G + + + G + + + +++ + I + Q SP+ Sbjct: 241 TGSVTKQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPS 300 Query: 301 AL-GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + E+ + + L ++E+ + + +E+ ++ Sbjct: 301 LISVESTGLKQEDFEEIVQLASSATLYRMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQI 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P+ L A + Q Q Q +Q P+ + +Q Sbjct: 361 EPQKNLQSAPAVSADTNAEATKTIEKLQQEIQQLQQTVKQLQNTPVRASRPSPRQQNEQP 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + Q + ++ + R +L A Sbjct: 421 RVQQKKVQVNLNKIYPVLENATRQDLINVRELWGDMLNLLSVPQRSLLHVSQPVAASAAG 480 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE--RDPWAAQVSQ 529 E + + + +D W Sbjct: 481 IIVAFDYPFLFQQAADDTTLLENMESALQRLTGNERQVVFVPKDKWPKIRQD 532 >UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=Q6FAW7_ACIAD Length = 711 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 218/571 (38%), Positives = 306/571 (53%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F ++VGQ HV AL + L GR+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETGIT+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV Sbjct: 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++ Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L IL +E I + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG Sbjct: 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D L+ A+ + RV L+ + + ++ +L +++ LH +A++Q P Sbjct: 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I ++ +LA+ + D+QLYYQ GR EL + + G EM +LR LAF P Sbjct: 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + S + T E + + + Sbjct: 362 SIDEVTVHASSQPSELQINQLPPAADSETDSSSRSELQHTNNRIEPDLEGSVVISVISQE 421 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + +A++ + + ++S + + + + K Sbjct: 422 AESFEAEQVVNHTTDDCQTAKTRQNKDVSSAVVEAEQENILVFNANSDDIVGIEQNKTAV 481 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 + Q + ++ H+ A ++ + +S E Sbjct: 482 VLAAQDMPFFPVEEERQIANHQHIALPAERVEQADTYQPEPHQVTQPISDSSSEESSLDA 541 Query: 543 AWKEESDNAVCLHLRSSQRHLNNRGAQQKLA 573 +ES + L + +++ + A L Sbjct: 542 LADDESTPLIDLSIDTNEHKVQVTSAANDLE 572 >UniRef50_A0JSD4 DNA polymerase III, subunits gamma and tau n=4 Tax=Micrococcineae RepID=A0JSD4_ARTS2 Length = 1078 Score = 326 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 162/676 (23%), Positives = 259/676 (38%), Gaps = 62/676 (9%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS L R++RP +FADV+GQEHV L L R++HAYLFSG RG GKT+ AR+LA Sbjct: 1 MSVTTALYRRYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + LNC G T TPCG C +C E+ +G +D+IEIDAAS V+D RDL + YAP R Sbjct: 61 RCLNCAEGPTDTPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARDLRERATYAPVR 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+++IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + Sbjct: 121 DRYKIFIIDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRL 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQA 236 + E + LE + N+E++ P L L+ RA GS+RD+LS+ DQ +A + + Sbjct: 181 VPPEPLMAYLELLCNQENVPVAPGVLSLVIRAGGGSVRDSLSVLDQLMAGAGPTGLDYEL 240 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 A+LG +VEA+ ++ V ++ G + + ++L + +VQ Sbjct: 241 AVALLGYTHASLLDDVVEAVAASDAATVFRAVDRVIQTGHDPRRFVEDLLERFRDLIIVQ 300 Query: 297 LSPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 P + + A R++ A + ++ E+ A R+ +E+ Sbjct: 301 AMPESAQSILRGMPADQIARLQNQAHNLGAAELSRAADVTNTALTEMTGATSPRLHLELL 360 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT--------------------------- 385 R L Sbjct: 361 CARILLPTSEQTERGIAARIDRVERRLNYGGNDVGTPAAAATASSAPAPSAPVPAAVPAP 420 Query: 386 ------------PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEP 433 P++ + P Q A + + ++ Sbjct: 421 AASPVPAAAPAASLAPAAVPRATSETPAPAPAASAPEQPAAPEAPARESLTPPRVSTTDW 480 Query: 434 AAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVAT 493 +A+ + A P + + A A A PV Sbjct: 481 PVDESQAANRSASGPAPSRPAGPQPAVPEAAFPQAPAAPAAASGPSAPAPVEPVAAARTP 540 Query: 494 PKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL---NAWKEESDN 550 + E+ + + R W + LS K + + Sbjct: 541 LRPEAGQPVAERNVPAPNASSDVEVLRRAWPEVLQTLSKIKRSTWALVEPNAQVGQFDGQ 600 Query: 551 AVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIV----------EDDNPAVRT 598 + L +S + L +A+ G ++ V E + A + Sbjct: 601 VLTLAFTTSGLAGAFGRADHSENLRQAIHKTVGIDCQINAVSGGASSSASSEPNPKAPAS 660 Query: 599 PLEWRQAIYEEKLAQA 614 P + ++A Sbjct: 661 PASPETPAGPKAQSKA 676 >UniRef50_Q8K983 DNA polymerase III subunit gamma n=19 Tax=Bacteria RepID=DPO3X_BUCAP Length = 363 Score = 326 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 181/358 (50%), Positives = 257/358 (71%), Gaps = 1/358 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ+LARKWRPQ+F ++GQ++++ A++NG SLG+IHHA+L SGTRGVGKT+IARL+AK Sbjct: 1 MNYQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC C C+EIE+G +D IEIDAASRTKVE+ R++LDN+ Y P++ RF Sbjct: 61 SLNCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP+H+KF+LATTD +K+P TI SRCL F L L Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I + L+HIL + + AL++++ A GS+RDAL+L + A+ ++ + + M Sbjct: 181 EDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + A L + ++E + +++M L+N+ + G+EW+ +L+EM+ LH IAM++ P Sbjct: 241 LGIPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLEWQNILIEMMRFLHHIAMLKSYPK 300 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ++++A +IQL Y+ LL GRKEL ++P+ +MGVEM LL+A+ Sbjct: 301 IWNQIFIKNNENEIKKIAENNSKYNIQLCYKILLKGRKELFFSPNHKMGVEMILLQAI 358 >UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBX8_THET1 Length = 550 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 156/553 (28%), Positives = 257/553 (46%), Gaps = 6/553 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R QTF ++VGQEHV L N + G+I HAYLF G RG GKTS ARLLAK Sbjct: 1 MS-QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + PC C C I +GR VDLIEIDAASR KVED D+++ V +APA R+ Sbjct: 60 AVNCLS-EGTKPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRY 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP H F+LATT+ K+ TI+SRC +F + + Sbjct: 119 KVYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITP 178 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L I E+I + AL +A+A+ GSLRDA+S+ DQ GD +++ + V + Sbjct: 179 REIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + +D + V A+++ + + ++L+ + + G++ E++ L + +++ Sbjct: 239 LGIVGEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKAYNQ 298 Query: 301 ALGNDMAAI--ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + A + + + + + +E+ + Sbjct: 299 NASKAGIERVSLQAISDQASMVSIGRLHEITEKFSTLDYTIRTGSYGYLPLELAAVALTN 358 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + +Q A T + + + A + + + TS+ AA + Sbjct: 359 KDSQPYERTENQRQQ--PNPAHTNSKSVIHRVEEVAEDVKDAISDIVAKVTSKNDAALPE 416 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 Q Q A R A+ ++ ++ + V + + Sbjct: 417 AQTSQSEPITLDRVQANWQRILDRLKASSLKVQALLKAGRPVAVEDGNTLVIEFQFDFHK 476 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 K+ ++ V +T + + + + + + ++S + Q Sbjct: 477 KSIEEPSNRELVESTLQKVLGGTWKIQCILSSEQSGLNPTDTRTEREKLSSDPRVRAAVQ 536 Query: 539 VALNAWKEESDNA 551 + E + Sbjct: 537 IFNGRIIEINGGE 549 >UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 Tax=Gammaproteobacteria RepID=Q0HHZ2_SHESM Length = 1071 Score = 325 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 261/654 (39%), Positives = 348/654 (53%), Gaps = 21/654 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF +VGQ HVL AL N L+ R+HHAYLF+GTRGVGKTS+ARL AK Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF Sbjct: 61 GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LK+L Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL+HIL +E + E AL LLA+AA GS+RDALSLTDQAIA G G V V +M Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++D+ L L++A+ +A+ +M + A G + + +L +L LLH+I + Q +PA Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++ A + P +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF Sbjct: 301 AAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P P+ +V + + T Q + + + + ++ Sbjct: 359 PEKPVKRWQVEDAAKVSLPAQQPSTIPAATEQAVNRVENQAEAEKKTPLTSTVDSQPAAT 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + A T +P + A + ++ + + A + ++ Sbjct: 419 EAVQSGFMSEPSVADPTLPQPEISKASQASQALVAEAAQQLLSDEDVSAVDGDDTAGEES 478 Query: 481 TTPVMQQKEVVATPKALKKA---LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 E + E A L +E+ A P V Sbjct: 479 ALNAALIAEQQVILSQAQSQGFGASTEVVSSTEAVLISESSPNSKTDASSESSPEPSSVS 538 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 N E + A+ +Q+ E I N + Sbjct: 539 TPVSNLDAEHNQAAMMDSASIAQKPSAAALTATVALSY------DDAEENIQAGANQSTD 592 Query: 598 TPLEWRQAIYEEKL---AQARESIIADNNIQTLRR---FF----DAELDEESIR 641 + + A A D+ Q + F D+ L +SI+ Sbjct: 593 ALASDEYSAEDYGQYDYAAAPLDAYQDDYSQFMVEEQGRFSGMEDSSLMSDSIQ 646 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 6/278 (2%) Query: 369 EVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKA 428 E P V P P + +A Q A + Sbjct: 773 EAQAGVINASLPAHVAPAPHPQFDPNDRPPWEEAPVDTLADVEPVATSYQGSETARAPQV 832 Query: 429 KKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQK 488 ++ P + AS+ + + + A P Sbjct: 833 SQTPQPIIAPQEPELATGIAHSASIPTLPTDTGAANTKTANSEETRVEQAIAPHPQRDTA 892 Query: 489 EVVATPKALKKALEHEKTPELAAKLAAEAI------ERDPWAAQVSQLSLPKLVEQVALN 542 T E + A W ++ L + V Q+A+N Sbjct: 893 AQPVTQTQTPPQSSEETQQSAPSTALTLAQSITGHPLDLHWYKLMASLEIGGRVRQLAVN 952 Query: 543 AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 + + N + L L+ Q+HL+ A ++L +AL+ G+ ++ +V +P TPLE Sbjct: 953 SICQLQANPLPLLLKPDQKHLSAPVAIEQLEQALTAALGNPRQVEVVIGIDPTRETPLEL 1012 Query: 603 RQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 R+ ++E L QAR+S++ D+N+Q L F AELD++++ Sbjct: 1013 RKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1050 >UniRef50_Q0RT17 DNA polymerase III subunit gamma (Partial match) n=3 Tax=Frankia RepID=Q0RT17_FRAAA Length = 1016 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 154/477 (32%), Positives = 222/477 (46%), Gaps = 10/477 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++RP TFA VVGQEHV AL L GR+HHAYLFSG RG GKTS AR+LA Sbjct: 1 MS-TALYNRYRPATFAQVVGQEHVTDALRKALRTGRLHHAYLFSGPRGCGKTSSARILAA 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G T PCGVCD C I G +D+ EIDAAS V+D RDL + +APA RF Sbjct: 60 SLNCEQGPTPEPCGVCDECVGIRTGASMDVTEIDAASHGLVDDARDLRERAFFAPASARF 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HM++ +FNALLK +EEPP ++KF+ ATT+P K+ TI SR + + + Sbjct: 120 KVFVVDEAHMVTAAAFNALLKVVEEPPPYLKFVFATTEPDKVIPTIRSRTHHYAFRLVPP 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 +R L I +E + +P L L+ RA GS+RD+LS+ DQ +A D + A Sbjct: 180 GVLRTHLASICEQEGVTVDPTVLPLVVRAGAGSVRDSLSVLDQLLAGADDDGLHYDRAVA 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D V+A+ +G + ++++ + G + ++L L + ++ P Sbjct: 240 LLGMTDGVLLDETVDALARHDGAALFTVVDKVVSAGHDPRRFATDLLDRLRDLIIMAAVP 299 Query: 300 AA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 A L + RMR A + P ++ L G E+ R+ +E+ L Sbjct: 300 DADARGLLESFSPDQIDRMRAQAAAVGPAELSRTADVLHGGLVEMRGTTSPRLMLELILA 359 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 RAL + +V+ ++ P ++ Sbjct: 360 RALLPAASADPAALLTRLERLER---RSVLAAPDSAAAHPASAPGFGPDPAAGSSPFGGV 416 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 R A A A P A + P + + AP Sbjct: 417 NGPDGPRGMPGPPGPDEAAAPARTASPARPAPAHSARAAAAPASQGPASGSWDAAPV 473 >UniRef50_B7K934 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K934_CYAP7 Length = 730 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 169/654 (25%), Positives = 289/654 (44%), Gaps = 40/654 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQE + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ C+ I + +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HMLS +FNALLKTLEEPP HV F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L+ I N+E I + A+ L+A+ A G LRDA ++ G ++ V Sbjct: 181 PLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDA-ESLLDQLSLLSGTITPARVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + L L++A+ + ++ RG E +L + G + + + + Sbjct: 240 ELVGAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTA 299 Query: 299 PAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A+ ++ + A+ +I Q L +L + R+ +E+TLL Sbjct: 300 PTRSDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP---------QQAPTVPLPE 407 L+ E P + Q P ++ + P+ E Sbjct: 360 LSLGVVSKPSLEEKPVNGNNGKNGKGHHSSVQAPSISPNSQIISPPPQPKPEPKVDPVQE 419 Query: 408 TTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 ++ + Q ++ E V A + L S + + A+ Sbjct: 420 SSPPQTTPEKPKTTEQNIQPSEDLEKLWHQVLDQVEPPATQALFSQQGHLISFDGSVAII 479 Query: 468 KAPAKKEAYRWKATTPVMQQKEVVATPKALKKALE---HEKTPELAAKLAAEAIERDPWA 524 ++ ++ ++ K +K ++ + PE+ + + Sbjct: 480 GVNSQNLFKLYQERISALETALKAIFQKFVKVNIQITNVNQAPEIPKETPSLNPISSRQI 539 Query: 525 AQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + +++ P+ + + + SS + +Q+++ Sbjct: 540 EPIKEVAQPQSTPSPDEEETFTNNGKSPQVDPPSSPEPESLSPSQEEI------------ 587 Query: 585 ELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 TI +D+ + E + ++ +A E L + F+ EL E Sbjct: 588 --TITQDEPEILDPVEENTLDESKNEINKACEL---------LIKAFEGELIEN 630 >UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q117S8_TRIEI Length = 695 Score = 325 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 6/479 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ+ + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T +PCG C+ C I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + L HI EE I A+Q++A+ A+G LRDA SL DQ G+++ + V Sbjct: 181 PLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLA-GEITVERVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + + + LVEA+ N +V+ + RG E +L + G + + + + Sbjct: 240 DLVGAVPERDLMVLVEAIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTA 299 Query: 299 PAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P + ++ + ++ I + L ++ R+ +E+TLL Sbjct: 300 PTSKNLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGL 359 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + + + + P + + P + E Sbjct: 360 LPSALPKFNQLEKQETRDISQNVSVKNTSKNLSQPLTKKPISEKPKQQISEPKEVSKEVP 419 Query: 417 QQLQRVQ-GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + + + +++ + + E V +A ++ Sbjct: 420 IAPKSEDFFTSSTNDTAKKSSSDSLETDKIKNESELQNIWEKVLAEVKPHSTQALLSQQ 478 >UniRef50_D2BCW3 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BCW3_STRRD Length = 727 Score = 325 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 165/602 (27%), Positives = 238/602 (39%), Gaps = 56/602 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-LALYRKYRPGTFAEVKGQEHVTEPLRQALRSGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCG C++C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEKGPTPDPCGECESCVALAPTGPGHLDVIEIDAASHGGVDDARDLRERAFFAPVSA 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+Y+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RFKIYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIKSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E IL E + EP AL L+ RA GS RD+LS+ DQ A D ++ Sbjct: 180 PPTALRTLMEEILTSEKVPFEPAALPLVVRAGAGSARDSLSILDQLFAGSDEAGITYARA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG D D ++ A +G +V +N G + +++L + ++ Sbjct: 240 VSLLGYTDGDLLDDVIAAFAARDGAQVFQAVNRVIEGGHDPRRFAMDLLERFRDLVILAN 299 Query: 298 SPAA----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P A L + A R++ A ++ P ++ + G E+ A R+ +E+ Sbjct: 300 VPEAAGSGLLDRPADELERLQAQAVSMGPAELTRAAEIFNAGLTEMRGAASPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L + TAV P A Sbjct: 360 ARTLLPGAAQGEAALLSRLERLEKGGVTAVPAAYAAPAPVIHAAPAPGAPAPVVQAVAPQ 419 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A A A + Sbjct: 420 APPPVPPAAGTAPAAPAEQSRPQGDG---------------------------------- 445 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A + A + W + L Sbjct: 446 ---------DWPVAARPGAPAPEPQAQQAPAAPAAAPVSGAGGGAVQQAWPQVLGVLKQR 496 Query: 534 KLVEQVALN---AWKEESDNAVCLHLRS--SQRHLNNRGAQQKLAEALSMLKGSTVELTI 588 +V +N V L + R+ G +A AL + G ++ Sbjct: 497 SIVVWANVNTNAQVIGVEGKVVTLGFTQVGAMRNFTGGGKDAVVAAALQDVLGGNWKVEA 556 Query: 589 VE 590 V Sbjct: 557 VV 558 >UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, putative n=2 Tax=Treponema RepID=Q73K31_TREDE Length = 612 Score = 324 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 166/638 (26%), Positives = 274/638 (42%), Gaps = 55/638 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQV A + RPQ F D++GQE V L + G+I HAYLFSG RG GKTS AR+LAK Sbjct: 1 MEYQVTATRRRPQRFEDLLGQEFVAATLQKSIEAGKIAHAYLFSGPRGCGKTSSARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TPCG C +C EI G +D+IEID AS T V D R + D + + P R+ Sbjct: 61 VLNCAEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ K+P TI SRC QF+ K + + Sbjct: 121 KIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFNFKLVSI 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E ++ L E I+ + AL +AR A GS+RDA +L DQ A DG ++ + + Sbjct: 181 EILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFSDGHITFEKIHEK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D LV A V NG+ +++++ GI E ++ + + +V+ Sbjct: 241 LGLTGVDSINKLVSACVAKNGQEALSILDGILQGGISVEQVVSDCADYFRSLLLVKHGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +++ + I+ +L K+L ++ D+R +E+ + R Sbjct: 301 KEALIGQRADRFPQDILQGWEAVQIERALSIMLQLFKDLRFSIDQRYELELAVSRLSWLG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + + + P P + P P + L + + Sbjct: 361 DYVSPADLKTAFDAAKSLISSRRTDVETGRPLPHREESRPKESPRPFDNAGSLTEQFKAV 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + +E + NN + ++ + Sbjct: 421 LRRDNKLDVFTEKKNEEKQPVSNNVPSDNVSFEKKDEAQ-------------------ET 461 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 ++ E K E E + L++ + W Sbjct: 462 VLQTVRSVENAFNNVEELKEPLIEALLEKSGILSSAVGQSKDWI---------------- 505 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 ++++ L RSS + + + + +++S + G ++L + Sbjct: 506 ------LKEDSLTLFARSSFDYTLIQKQKDTVIDSISEITGKKIKLILK----------- 548 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 + I + + E++ I+T+ F ++ E Sbjct: 549 ---EYIPPQPENKVEETVKEPEKIRTITDVFMGKIVEC 583 >UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QAW7_PSYCK Length = 685 Score = 324 bits (830), Expect = 7e-87, Method: Composition-based stats. Identities = 228/671 (33%), Positives = 326/671 (48%), Gaps = 44/671 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQ HV AL N + R+HHAYLF+GTRGVGKT+IAR+L+K L Sbjct: 5 YQVLARKYRPKNFHELIGQTHVSQALINAIDYNRLHHAYLFTGTRGVGKTTIARILSKCL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC+TGIT+TPCGVCDNC I+QGRF+DLIEIDAASRTKVEDTR+LLDNV YAP++GR+KV Sbjct: 65 NCDTGITSTPCGVCDNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPYAPSQGRYKV 124 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 125 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRCLQFVLRPLSQSL 184 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ++L +E + + AL LA AA+GS+RDALSLTDQAIA G G + V++MLG Sbjct: 185 LSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGALDDVTVNSMLG 244 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D +SL+ + + V A I + A+ ++ ++ + LLH++A+ QL P Sbjct: 245 LIDAADLVSLITDIYNHDKPAVAAHIEQMRAQMVDASSMFDGLAELLHQLALCQLLPEVA 304 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 N A + +LA+ + P +QLYY+ ++ R+ + A +EM +LR LAF P Sbjct: 305 LNVNEAQAQHIDQLAQHMSPDVLQLYYEIVVQAREGVKLASTPMQALEMCILRLLAFRPL 364 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVP--PQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 S T + +P S+ + T + + Q Sbjct: 365 PVDEILANVLDSTVMAIEKPTTTVSSATLITEPVSSSLELQTQSDNIVYENIDTSVNDKQ 424 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 V + E + N T + +E + Sbjct: 425 DVGADNSITQHEQYYSNDEASHLNQYDNSSVYDTLELSNNQPEPVVEPVVEPVVEPVVEP 484 Query: 481 TTPVMQQKEVVATPKALK-----------------------------------KALEHEK 505 + + V + + ++ + Sbjct: 485 VVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPVVEPEVNDSQLLIQSEDPRA 544 Query: 506 TPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ----VALNAWKEESDNAVCLHLRSSQR 561 + + W + + Q +A S NA + ++ Sbjct: 545 LLRCPPQELIGEWTPEKWDYWLQTAREAASLAQDELALARQGMMTGSCNAEAI-FVTAVD 603 Query: 562 HLNNRGAQQKLAEALSMLK-GSTVELTIVED-DNPAVRTPLEWRQAIYEEKLAQARESII 619 + + ++LA + + + + L I +TP +Q E A + Sbjct: 604 SKHLQATFEQLATKMQVQFPDAAISLRIDSSIAQADDKTPERRQQKRLVEAKTVAESRLF 663 Query: 620 ADNNIQTLRRF 630 +Q L Sbjct: 664 NTPVMQYLTER 674 >UniRef50_A0M2F5 DNA polymerase III subunit gamma/tau n=20 Tax=Bacteroidetes RepID=A0M2F5_GRAFK Length = 653 Score = 324 bits (829), Expect = 7e-87, Method: Composition-based stats. Identities = 145/666 (21%), Positives = 270/666 (40%), Gaps = 57/666 (8%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 ARK+RPQTF DVVGQ+ + LAN ++ + A LF+G RGVGKT+ AR+LAK +N + Sbjct: 8 ARKYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKE 67 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 + ++ E+DAAS V+D R+L+D V+ P G +KVY+ID Sbjct: 68 TQDP------------NEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGNYKVYIID 115 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + V ++ Sbjct: 116 EVHMLSASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRITVTDAKNY 175 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L HI +E + E AL ++A+ A+G++RDALS+ D+ ++ ++ QAV+ L LD Sbjct: 176 LAHIAEQEGVNAEDDALHIIAQKADGAMRDALSIYDRVVSFSGNDLTRQAVTENLNVLDY 235 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 D + + + ++E N +++ N+ + G + + + + + + + ++ Sbjct: 236 DTYMEVTDLVLENNIPQLLVKFNDILSSGFDGHHFIAGLASHFRDLLVCKDQKTIILLEV 295 Query: 307 AAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG--VEMTLLRALAFHP-- 361 + + E ++ + + + + ++R+ + M L ++ F Sbjct: 296 GEQTKAKYFEQSQKASHQFLFEAIELANSCDLKYKSSHNQRLLVELCMMQLASITFDSEK 355 Query: 362 --------------------RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 E + P A + Sbjct: 356 KKSDRKIIPASNFEQEAVSIPSEKKELVRENEHDISSPSEESSIPKPKVATETCAKENEE 415 Query: 402 TVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARP 461 E+ +++ + + + + K + S+ + + + S ++ V Sbjct: 416 PYYSEESPAEINSVGEIPEEAEIQKKTEISDFTENEAQKTGEEDSEKPKTSNSEIVNQDD 475 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + A + + ++E V+ + E + A + E + D Sbjct: 476 KDAFETAAEEPSKETQPAKKAFPDIKREKVSGLSIKSIGRKKELAEQQKAMMPVEEVMDD 535 Query: 522 P---------WAAQVSQLSLPK--LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 W +L ++ + + D + L + L+ + Sbjct: 536 DFNEEDLVKQWKNYTEKLKRKGEKILASIFESQIPTLEDRNIHLTFPNETMKLDLEREEN 595 Query: 571 KLAEALSMLK-GSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 +L L + + L I D+ + + + + A+ + LR Sbjct: 596 RLMTYLKAHLRNTHISLIIHVDEATSRKYAF--------TPQEKYEKLKEANPLLDKLRA 647 Query: 630 FFDAEL 635 FD ++ Sbjct: 648 TFDLDV 653 >UniRef50_A8PNF7 DNA polymerase III subunit tau n=1 Tax=Rickettsiella grylli RepID=A8PNF7_9COXI Length = 523 Score = 324 bits (829), Expect = 8e-87, Method: Composition-based stats. Identities = 212/536 (39%), Positives = 304/536 (56%), Gaps = 18/536 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RPQ+F +++GQE L N L RIHHAYLF+GTRGVGKT++ARLLAK Sbjct: 1 MSYQVLARKYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+T IT PC C +C+ I RF DLIE+DAASRTKVEDTRDLL +V Y P++GR+ Sbjct: 61 CLNCQTQITPEPCNQCISCQAIHANRFTDLIEVDAASRTKVEDTRDLLADVHYTPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP HV FLLATTD Q+LP TILSRCLQFHLK + Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCLQFHLKTITT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +QL +IL +E I EP AL LA+AA+GSLRDALSL DQAIA + ++ Q ++ + Sbjct: 181 VQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQAIAYTNQNLTKQDINTL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L++A++ + ++ +L+ + + G+++ ++ E+L LH++A+ Q Sbjct: 241 LGHVAHSEIIQLLDALILEDTAKLWSLVEQFSELGVDFSCVMDELLTCLHQMALSQRFKT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + + A+T+ P IQLYYQ +L R+++ AP R+G EM LLR LAF Sbjct: 301 EV-----NYTQTIIDFAQTLSPEAIQLYYQIVLFSRRDITLAPTPRLGFEMMLLRLLAFK 355 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P E P + P+ Q + + L + Sbjct: 356 PAGDDSEIN----------PIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIA 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ A ++ N+ +L R + A A E ++ Sbjct: 406 QLKLTGLTHALAQQCALQSYHNNHVSLCLDPRQ---AALRSAKQETKLAHALSEYFKKPI 462 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T + ++TP L++ + ++ + L + + ++L + Sbjct: 463 TLSIGVGDTSLSTPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQPQSIQ 518 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 2/164 (1%) Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 A + + + T + + + W ++QL L L Sbjct: 356 PAGDDSEINPIKLTQTRTPAPEKQPIATHKTDKTILPNNEKDLHWPTLIAQLKLTGLTHA 415 Query: 539 VALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 +A + +N V L L Q L + + KLA ALS + L+I D ++ Sbjct: 416 LAQQCALQSYHNNHVSLCLDPRQAALRSAKQETKLAHALSEYFKKPITLSIGVGD-TSLS 474 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 TP Q ++L QA E++ D +Q + + FDA+L +SI+ Sbjct: 475 TPARLEQQHQSQRLEQATEALQNDPTLQAIMQTFDAKLQPQSIQ 518 >UniRef50_B4CYL6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYL6_9BACT Length = 598 Score = 324 bits (829), Expect = 9e-87, Method: Composition-based stats. Identities = 175/625 (28%), Positives = 266/625 (42%), Gaps = 41/625 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q H++T L N ++ R+ AYLF G RG GKTS AR+ AK LNC T PCGVCD C+ Sbjct: 6 QAHIVTTLKNAIAQNRLAQAYLFVGPRGTGKTSTARIFAKALNCVHAPTTNPCGVCDMCK 65 Query: 81 EIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 EI G ++++E DAAS T+V+ R+++ DNV+YAP RG +K+Y++DEVHMLS SFNAL Sbjct: 66 EIAAGNSLNVLEFDAASNTQVDKIREIIIDNVKYAPTRGNYKLYIVDEVHMLSNSSFNAL 125 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEPP HVKF+ ATTD QK+P TI+SRC +F L+ + +I L I +E I Sbjct: 126 LKTLEEPPPHVKFVFATTDVQKVPTTIISRCQRFDLRRIPTPEIAQHLLFIAGKEAIELT 185 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P A + +AR AEG LRDA S+ DQ +A ++ Q V + G L E ++ Sbjct: 186 PTAAESIARGAEGGLRDAESMLDQLVAFCGDKIDEQNVLNIFGFTARQTVAELCEHLING 245 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL-GNDMAAIELRMRELAR 318 + + I + + G + L+ +++ L + + Q +P L + A + A Sbjct: 246 HTGAALGAIQKQSDAGKDLSRLMADLIEHLRNLLVAQSAPETLHEDLSAEAIAELTAQAG 305 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPV 378 I + + + +A +++M E+ +RA+ + L E Sbjct: 306 RIAADKLLNLIEQFADAESRMKWAANKKMHFEIAAIRAVQTLGQASLTEVLDTL-----T 360 Query: 379 APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 A + P + AP+ + T + A A S PA A Sbjct: 361 AIRGGGAMPERPVKKVEAPKTPVAAVAEKKTERPKPAPVSSPAPVAEPAAPVSVPAPAEA 420 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALK 498 + + AS+ + P + Sbjct: 421 PASRPSLSAFVAASIGGSEKKTP--------------------------AAAPKPDPKVS 454 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLS--LPKLVEQVALNAWKEESDNAVCLHL 556 H+ + AA +A A ++ W V+++ P + + V + S L Sbjct: 455 AEPAHKVEAKPAATVAPSANAQELWPQLVTRVRKDRPLISDWVESGQLTDVSSGVALLSF 514 Query: 557 RSSQ----RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLA 612 S + L + L+ L G+ V L V R+ E Sbjct: 515 PPSADLARDTCERPNNRGFLEKLLTELTGAPVTLKTETRAGLVVEKLA--REEAKPEPKV 572 Query: 613 QARESIIADNNIQTLRRFFDAELDE 637 E+ D IQ F AE+ Sbjct: 573 DPMEAFKNDPLIQKALAEFKAEILP 597 >UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 Tax=Aeromonas RepID=A4SMN2_AERS4 Length = 865 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 259/578 (44%), Positives = 335/578 (57%), Gaps = 5/578 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP TF VVGQ HVLTAL N L GR+HHAYL SGTRGVGKT+IAR+LAK Sbjct: 1 MSYQVLARKWRPHTFEQVVGQHHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GI++ PCGVCD CREI+QG FVDL+EIDAASRTKVEDTR+LLDNVQY PARGRF Sbjct: 61 SLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLSRHSFNALLKTLEEPP +VKFLLATTDPQKLP+TILSRCLQFHLK+LD Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QLE +L++E EPRAL LA+AA+GS+RDALSLTDQA+A G+G V ++V AM Sbjct: 181 TQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRLESVLAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD L+EA++ + MA I E A G +++ L E+ GLLHR+AM QL PA Sbjct: 241 LGTLDHRHLHQLLEAILRQDAAATMAKITEIATLGPDFDQLHAELEGLLHRVAMAQLLPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A + +LA+ + P ++QL YQ +L GRK+LP+APD R +EMT LR LAF Sbjct: 301 TVQEQGAD-AESLLQLAQAMSPEEVQLCYQIVLGGRKDLPWAPDGRTSLEMTCLRMLAFS 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 PR P +A + P Q+ + + + + + Sbjct: 360 PRREAVHPANLTVLPPSMAGGMGVAPAQLGKSRGADSAPTLATAIVAPPAAPGSVSVEHT 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q + + + + + ++ A+ A Sbjct: 420 ATQMVPLVAHAVLETDEQEMASDALSAPLFVEQDELLREAQQMGYE----AQPVMDAPSA 475 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + A+ E+ E+ A++ AE++ A + L ++ Sbjct: 476 PISTVVAADEAMQHLPSDMAVAAEQPTEVPAEIVAESVVEPEAAPSAASSMQSLLGKRNL 535 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSM 578 L + + + + + A++ Sbjct: 536 LRSRLRSEPATAQAPRVAPIKPVAAPEGRPVAQPAVTP 573 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 84/247 (34%), Gaps = 4/247 (1%) Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 A + A Q A + P + A Sbjct: 621 ESAASASMANVAQTAASGASAVPAYGQAAPAQAPTRARPNPDDLPPWDLDGTPAARAQVA 680 Query: 457 VQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 + +A A E + + + + ++ E + + Sbjct: 681 PAVSSAAPVMPQAVATSEPAPMVDSVMETIDWDELESDNQPEEGEEVARLI----PSSLL 736 Query: 517 AIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL 576 DPWA +++ + + Q+A+N+ + V L L+ QRHL + A+ LAE + Sbjct: 737 VNCDDPWAELIARTGVGGRLRQLAINSVMTRQGDKVLLTLKPEQRHLVSDRARVDLAEII 796 Query: 577 SMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 G V++ + P TPLE +Y Q + D N+Q LR+ F A L Sbjct: 797 GPELGQAVQVEVTLGTVPDQETPLEIEHRLYLGVREQVSRDLEQDPNVQFLRQRFGAVLH 856 Query: 637 EESIRPI 643 +ESI P+ Sbjct: 857 QESIEPL 863 >UniRef50_D0YP73 DNA polymerase III subunit gamma/tau n=3 Tax=Mobiluncus RepID=D0YP73_9ACTO Length = 719 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 160/623 (25%), Positives = 249/623 (39%), Gaps = 35/623 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFA+V+GQ+HV AL L+ GRI+HAYLFSG RG GKT+ AR++A+ LNC Sbjct: 4 ALYRRYRPDTFAEVIGQDHVTKALEASLANGRINHAYLFSGPRGCGKTTSARIMARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R RFK+ Sbjct: 64 AEGPTPTPCGKCDSCRDLATGGSGSLDVVEIDAASNGGVDDARELRERATFAPVRDRFKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+KF+ ATTDP K+ TI SR + + + E Sbjct: 124 FILDEAHMVTAAGFNALLKLVEEPPEHIKFIFATTDPDKVIGTIRSRTHHYPFRLVAPEI 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAML 241 +R L + + E + E L L RA GS+RD+LS+ DQ +A V A+L Sbjct: 184 LRDYLADLCHREGVTVEDGVLGLAVRAGGGSVRDSLSILDQLMAGEAEPVLHYDRAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D LV+A+V+ G +++ G + + ++L L + +++L+ A Sbjct: 244 GYTDSGLLQGLVDALVDGCGADAYGVVDRMIQTGHDPRRFVEDLLQYLRNLVILRLAGAG 303 Query: 302 LGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + I MR PP + + G E+ A R+ Sbjct: 304 AEAVLGDIPAVQLSAMRAQVAARPPRTWTRAAEQVNAGLSEMGGASSPRL---------- 353 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + V S + P +S A Sbjct: 354 -----------SLELLVAQLLLEFGVEAGEPAASLGVSGAAVSAPAPAVPVSSVSTPAVP 402 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 G A + + V V R + Sbjct: 403 AAASSAGFPAVPAPAAPTAVSQQSAAPVSSAAPIPVPAAVSPRVHEVPAPSPQESQPEPV 462 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 W+ + K K + + A R W + L Sbjct: 463 WEFKPTPWGISGEAVSGKTTLKPAKAALESAMPASSDNYEAIRSRWGEIMDVLKAHHSAT 522 Query: 538 QVA---LNAWKEESDNAVCLHLRS-SQRHLNNRGAQQKLAEALSMLKGSTVELTIVE--- 590 + + N V + ++ LA ++ + G V +T V Sbjct: 523 ESLLSTHGQLQGMRGNTVEIAFQNQGMLRAFGERHVSALAGVITQVTGQNVVVTGVVAGF 582 Query: 591 DDNPAVRTPLEWRQAIYEEKLAQ 613 + T + + ++ Sbjct: 583 GAPSSPSTAPQSVSRLPAPPDSE 605 >UniRef50_C8NBE6 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBE6_9GAMM Length = 636 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 230/642 (35%), Positives = 324/642 (50%), Gaps = 12/642 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARKWRP+ F ++VGQ HV AL L RIHHAYLF+GTRGVGKT+IAR+ AK L Sbjct: 2 YQVLARKWRPKNFHELVGQTHVTQALTYALDHNRIHHAYLFTGTRGVGKTTIARIFAKSL 61 Query: 63 NCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC+ +++ PCG CD+C+EI+QGRF DLIE+DAASR++VE+TR+LLDNV YAP +G++K Sbjct: 62 NCQKNHVSSNPCGECDHCKEIDQGRFPDLIEVDAASRSRVEETRELLDNVPYAPVKGQYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VYLIDEVHM S SFNALLKTLEEPP HVKF+LATTDPQKLP TILSRCLQFHLK + Sbjct: 122 VYLIDEVHMFSASSFNALLKTLEEPPPHVKFILATTDPQKLPATILSRCLQFHLKNMSER 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 QI L HIL EH +EP AL LLA AA GS+RD+LSL DQA+A G G V T+ V+ +L Sbjct: 182 QISEHLAHILQAEHAEYEPDALHLLANAAAGSMRDSLSLLDQALAYGRGHVRTRDVATLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + + Q L +++ + + + + ++ LL+ +L + +I + QL Sbjct: 242 GAVPEPQLLHMLQLLANGDAPGLRNTLESLDEYAPDYAGLLLRLLQQMQKITIAQLGAER 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ A + P +QL+YQ + LPY PD RM +EM+LLR +A P Sbjct: 302 YAEEIPAALHALAARL---PVELLQLWYQIGNEAWQNLPYQPDARMALEMSLLRMIALQP 358 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P +P R + +T + + A T A+ Sbjct: 359 LLPTSDPAQARPVREAAPASDSLTASLQAQTTPATATPAATTEPQAVAPSETASHG---- 414 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 A A + A A + + D P E P E K Sbjct: 415 --EAPAAPTTATVHAEPADNEPPPWEDTTPAAADDSNDAVPPWVSETIPDDSERTPAKKP 472 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL 541 T + W+ ++ L L + + Sbjct: 473 ESAPAAAIAPETAAPAAAKKPAAPPANTTDPGDLIDNL-ERWSDFLASLDLHEYPLLLLE 531 Query: 542 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 N+ + L L ++ + AQ + A ++ + TI A++TP+E Sbjct: 532 NSVPASWQAPL-LSLYTAPTGIIFDQAQNREQAAAAIAHALGIACTIEIQPADALKTPIE 590 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 +R+ +A + + I+ + F L ++I+P+ Sbjct: 591 YRRQKNAAAQQRAEQDFLNHPQIRAAQATFGPALQVDNIQPL 632 >UniRef50_C7GZE0 DNA polymerase III, subunit gamma and tau n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZE0_9FIRM Length = 473 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 137/412 (33%), Positives = 214/412 (51%), Gaps = 4/412 (0%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L ++RP TF +V+GQE+++ N L G + HAYL G RG GKT++ARL+AK +NC Sbjct: 7 ALYTRFRPNTFDEVIGQENIIKVFLNQLKAGSVSHAYLLCGIRGTGKTTLARLMAKAVNC 66 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 PCG C+NCR I + +D+IEIDAAS V+D R+L+D V Y P+ KVY+ Sbjct: 67 LDPQK-KPCGACENCRSITEESHMDVIEIDAASNNGVDDVRELIDTVAYPPSVAEKKVYI 125 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDP K+P TILSRC++F L+ + + Sbjct: 126 IDEVHMLSQGAFNALLKTLEEPPSHVIFIFATTDPNKIPKTILSRCMRFDLRRITESDLV 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L + E AL+L+A AEGSLRDALS+ +Q +A +G ++ + V L + Sbjct: 186 KRLGFVCESCSREIEEDALKLIAVNAEGSLRDALSILEQVMAIDEGIITREDVLESLHAV 245 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP--AAL 302 D + + +++ ++ + E+ + N A G + + L ++L L + + ++S AL Sbjct: 246 GDGKIIEIMDGVLSNDLEKAIVTCNNAFDDGKDEKQFLNDLLIYLRNMMLAKVSGELDAL 305 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM-TLLRALAFHP 361 N + ++ A + I+ ++ A R+ +E + + P Sbjct: 306 INMHSDDINELKRQASGVSMDFIERAIFEIVRIIDLSKGASYPRILIEAGLIKVSNCLSP 365 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + E + T ++P P + Sbjct: 366 DKSIKKEETKPSGIKKSSNVGKNTNDEMPVTPAETSAPVAKSQEGMAQGKSE 417 >UniRef50_C7QZS3 DNA polymerase III, subunits gamma and tau n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZS3_JONDD Length = 872 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 162/664 (24%), Positives = 257/664 (38%), Gaps = 52/664 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF+D++GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDTFSDMIGQEHVTGPLMQALRSNRVNHAYLFSGPRGCGKTTSARVLAR 59 Query: 61 GLNC----ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYA 114 LNC TPCG C +C+E+ +G +D++EIDAAS V+D R+L + ++ Sbjct: 60 ILNCAENSPENPRDTPCGQCPSCQELARGGAGSLDVVEIDAASHGGVDDARELRERATFS 119 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P+R R+K++++DE HM++ FNALLK +EEPP ++KF+ ATT+P K+ TI SR + Sbjct: 120 PSRDRYKIFILDEAHMVTAQGFNALLKIVEEPPPYLKFIFATTEPDKVIGTIRSRTHHYP 179 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVS 233 K + + + + + +E IA L L+ RA GS+RD LS+ DQ IA G +S Sbjct: 180 FKLVAPDTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQGSAIS 239 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + A+LG +V+A+ +G + +I E G E + ++L + Sbjct: 240 YEHAVALLGYTPATLLDDVVDALAAHDGAALFRVIEEIINTGHEPRRFVEDLLERFRDLL 299 Query: 294 MVQLSPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +V LSP A RM A+ + + T E+ A R+ + Sbjct: 300 IVALSPDGARAVLSALPADQYERMNHQAQQLGAGHLTYAADTTNTALTEMSGATSPRLHL 359 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 E+ R L P V Sbjct: 360 ELLCARLLLPTASDSAAALAARIDKLERGHGPTRAAVQPTSPAADGRDNDEAPVARTARP 419 Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA---- 465 + + + +A P + A V V SA Sbjct: 420 VAKRPDSTRTTPARPNPAPAQPAGTSAPALNPAPEPDPQVAAPVNSPTAPPAVSSAASAA 479 Query: 466 -------------------------LEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKA 500 + AP+ + Q+++ P A A Sbjct: 480 APTATTSDDVALAAAASWAAAASLVQDSAPSTPQRAHENNARNEPQREQQPEQPVASDPA 539 Query: 501 LEHEKTPEL------AAKLAAEAIERDPWAAQVSQLSLPKLVEQVA---LNAWKEESDNA 551 P + + W + + + + A + + Sbjct: 540 PGAHPVPTAGVEHSVSGASLTKGAVESAWVSALDTVRQQSMPAWAMAQQHAAVHGVTGST 599 Query: 552 VCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEE 609 V + S RG LA+ALS G+ VE+ + + T A + Sbjct: 600 VHVTFPSPGLAAGFAGRGGDALLAQALSTAVGAPVEVAVHVAGSEPAITSAPPLLAAPDV 659 Query: 610 KLAQ 613 + + Sbjct: 660 PMHR 663 >UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPA0_9FIRM Length = 743 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 152/614 (24%), Positives = 250/614 (40%), Gaps = 6/614 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+R TF +V+ QEH+ T L N + G HAYLF+G+RG GKT+ A+L+AK + Sbjct: 2 HLALYRKYRSATFDEVISQEHITTTLKNQIKAGTPAHAYLFTGSRGTGKTTCAKLMAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCG C++C+ I G D+IE+DAAS V+D R L D V YAP R+KV Sbjct: 62 NCLSPVDGNPCGECESCKAIAAG-CPDIIEMDAASNNGVDDVRALRDEVMYAPTVCRYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP HV F+LATT+ K+P TI SRC QF +DVE+ Sbjct: 121 YIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQFRFSRIDVEE 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +L I +E++ A +L++R ++G +RDA+SL DQ I+ + + V G Sbjct: 181 STKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD-IDEETVRTTAG 239 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +L + + E N + +++E + + LL E+L + ++ + + Sbjct: 240 IAGTEHLFTLAQCIHEQNAPEALKILDELHNQSKDLMLLLDELLSHFRNLCILSATNSDF 299 Query: 303 GNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + +I L P R+ EM L+R Sbjct: 300 SLIPAGSGTRNDLARQTKEFTLGEIMRCMDILQDCIARTPKTAKRKTVAEMCLIRLCTPR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + P+ ++ + +++ ++ Sbjct: 360 LDSDTSALSLRLEKLENRLDKLCDGEISIQPRTAVQTGESTEKHISAQSAKPVSVAGDRP 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A + E + + + S + A Sbjct: 420 QDIIADTLNRIENKITSADDKQKDVTAPTAPVQQSGTERNAADSKPDWLFEGTGGADENA 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +T A E A + + D W + Sbjct: 480 STGNEDAPPFDLDEPQASVAPPEPVPQEQAGNTSGNGNKPD-W-LFEGTGGADENASTGN 537 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 +A + D + Q + G + L G T + +++ Sbjct: 538 EDAPPFDLDEPPASIAPTEQEQASKTGGNGDKPDWLFEGTGGTDDNASAGNEDAPPFDLD 597 Query: 601 EWRQAIYEEKLAQA 614 E + +I + QA Sbjct: 598 EPQASIAPTEQEQA 611 >UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YCC7_DICT6 Length = 521 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 141/379 (37%), Positives = 208/379 (54%), Gaps = 2/379 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L RKWRPQTF +VVGQEH++ L N L I HAYLF+G RG GKT+IAR+LAK LN Sbjct: 3 IALYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIGHAYLFAGPRGTGKTTIARILAKALN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T TPC C++C EI +GR +D+IEIDAAS +++ RD+ + + P R R+KVY Sbjct: 63 CVQGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDRYKVY 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLK LEEPPEHV F++ATT+PQK+P+TILSRC +F + L +++ Sbjct: 123 IIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFDFRRLTRDEV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 QL I +E AL+L+A ++GS+RDA+SL +Q + D +++ + +LG Sbjct: 183 IKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYSDQEITEELARNLLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--PAA 301 + + +A+ E N +L+ + G + E+L + +++ Sbjct: 243 PTYEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFRNLLLLKADERIGN 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 L + + + + +Q LLI L + + +EM LL Sbjct: 303 LLSLTQEEFEELMQETKLYTIKRLQDIIDQLLILENRLRDLTNAPLVMEMILLPLFMKEE 362 Query: 362 RMPLPEPEVPRQSFAPVAP 380 P +P Sbjct: 363 TAETQPISQPLTQAVSSSP 381 >UniRef50_Q47TX5 ATPase n=2 Tax=Actinomycetales RepID=Q47TX5_THEFY Length = 692 Score = 323 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 176/623 (28%), Positives = 259/623 (41%), Gaps = 60/623 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP TFA+V GQEHV L L GR++HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MS-IALYRKYRPATFAEVRGQEHVTEPLRQALRNGRVNHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T PCG CD+C + + G +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCAKGPTPDPCGECDSCVALAPDGGGSIDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE HM++R FNALLK +EEPP H+KF+ ATT+P+K+ TI SR + + + Sbjct: 120 RYKVYIIDEAHMVTREGFNALLKLVEEPPPHLKFVFATTEPEKVIGTIRSRTHHYPFRLI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R +E ILNEE + ++P AL L+ RA GS RD LS+ DQ +A D + ++ +A Sbjct: 180 PPNTLRELIEEILNEEKVPYDPAALPLVIRAGGGSARDTLSILDQLLAGSDERGITREAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG D +V+A+ +G V LI+ G + ++L + + ++ Sbjct: 240 VQLLGYTDSSLLGEMVDALGAGDGAAVFELIDRVVEGGHDPRRFAADLLERVRDLVVLNA 299 Query: 298 SPAALG----NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P AL N +MRE A + + + L G E+ R+ +E+ Sbjct: 300 VPDALDKGLINVPPDAVEQMREQASRLGAAQLTRAAEILNKGLTEMRGTTSPRLLLELMC 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L P A A + + P + P P T Sbjct: 360 SRILLP--------GVDPGDELALAARLERLERNGIAAAPAAPAVSPPAAGTPATAPPST 411 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + P+A P + A P P+A A Sbjct: 412 PAAAPRPSTAEPRPPQPPAPSARPHPAPAAADDWGAPRRPSQPAPAAPQPAAPGPAGEGS 471 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 RW + A ++ + Sbjct: 472 FDDRWPHIVEYLASNRKRAAHAIVRDGVHATL---------------------------- 503 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 + L + R G + +AEA+ + G V + Sbjct: 504 -------------LQGRTLTLFFETEGLMRSFVTGGRARDIAEAVHRVFGLEVAVEAKAG 550 Query: 592 DNPA-VRTPLEWRQAIYEEKLAQ 613 + P + + + +AQ Sbjct: 551 HPGNVRQAPPQAPMSRPPQPVAQ 573 >UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8S0_CARHZ Length = 511 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 130/346 (37%), Positives = 209/346 (60%), Gaps = 2/346 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RKWRP+TF+++VGQE ++ L N ++ ++ HAYLFSG RG GKT+ A++LAK + Sbjct: 2 YLALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C I +++ EIDAAS +++ R+L ++++ PA+G++KV Sbjct: 62 NCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPPEHV F+LATT+ K+PVTI+SRC +F K + + Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L++I +E + +E AL L+A A+EG LRDALSL DQ + ++ + +LG Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPK-ITVEDTLKVLG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L L+ A+ E N +++ I E RG++ + + ++L + + +++ Sbjct: 241 FVSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEVE 300 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 + ++R A + L + + +E+ YA R+ Sbjct: 301 ELM-PEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIW 345 >UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWR2_METI4 Length = 618 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 154/638 (24%), Positives = 260/638 (40%), Gaps = 48/638 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV +RK+RP+ F++VVGQEHV+ L N + LGR+ HAYLFSG RG GKT++AR+LAK L Sbjct: 16 YQVFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSL 75 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G A C +I+ GR +D IEID AS V+ R+L + + P + R+K+ Sbjct: 76 NCADGPNADFDPDDPICLDIDAGRSLDCIEIDGASNNGVDQVRELREAAKSLPVQSRYKI 135 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML++ +FNALLK LEEPP HVKF+ ATT+P K+P T+ SRC +FH K + Sbjct: 136 YIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQRFHFKRIPRRL 195 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I +E I E +AL+++A +EG+LRDA DQ I+ ++ +V M G Sbjct: 196 IADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFYGEKIDQSSVQEMFG 255 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + + +G + ++ G + +LL LLH IA+ S +L Sbjct: 256 LVGIEPLCRLLTDLAQGDGRGALKEAHQLLESGKDPLSLLRSFRNLLHDIALYMASVESL 315 Query: 303 -GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++R ++ + + + + + +L YA + + E+ +L Sbjct: 316 GLELDPEELDQVRSMSSRLSLSFVINLLEAIDQWENKLRYALHKEVLFEIAILELSQLKE 375 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 ++ + E + + + P +Q + + Q Sbjct: 376 KVAIEELLAQWRVQGEESSENLKGEKTALSTPPLPEEQGKKEEETTLPQALFPSVQAGNP 435 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 G + + + A E + + + + L ++ Sbjct: 436 PSGTKEQPQGGSLTPVGTQKKEQTAAELFSHSPPPLSPQEQWAKLVES------------ 483 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL--SLPKLVEQV 539 K + E + E + + L + K+ + Sbjct: 484 --FAADKADFRSLADKLYFYECRSEELIIQHALTEEDFSRRLSPFIPLLAKEVKKVFNKK 541 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + ++ TP Sbjct: 542 LSFYPLHLKPSGLTAAESPTKNK-----------------------------RKSYSPTP 572 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + +A S+ D I+ F ++ Sbjct: 573 EKNNPPQEHFLVDEA--SLKNDPLIKEALELFKGKILR 608 >UniRef50_C5BXR7 DNA polymerase III, subunits gamma and tau n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BXR7_BEUC1 Length = 841 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 166/683 (24%), Positives = 254/683 (37%), Gaps = 88/683 (12%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TFADV+GQEHV L L R HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFADVIGQEHVTGPLMAALRSDRATHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG CD+C E+ +G +D++EIDAAS V+D RDL + +APAR R+K+ Sbjct: 64 AQGPTDTPCGTCDSCVELARGGPGSLDVVEIDAASHNGVDDARDLRERAVFAPARDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPP HVKF+ ATT+P ++ TI SR + + + + Sbjct: 124 FILDEAHMVTAQGFNALLKLVEEPPPHVKFVFATTEPDRVIGTIRSRTHHYPFRLVPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 + L + E +A P L L+ RA GS+RD++S+ DQ +A D + A+L Sbjct: 184 LGDYLAQVSEAEGVAVAPGVLPLVVRAGGGSVRDSMSVLDQLMAGADSDGLDYDRAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +V+A +G V +I+ G + + ++L L + ++ + Sbjct: 244 GFTHATLLDDVVDAFAAGDGATVFRVIDNVIESGHDPRRFVEDLLERLRDLIVLAAAGDQ 303 Query: 302 LG----NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 RMR A+ + + + G E+ A R+ +E+ R L Sbjct: 304 AVAVLRAIPEDQVERMRGQAQHLGAARLSRAADLVNAGLTEMTGATSPRLQLELLCARIL 363 Query: 358 AFHPR----------------------------MPLPEPEVPRQSFAPVAPTAVMTPTQ- 388 P PV T + Sbjct: 364 LPATPAAATGVEPRSAGTSGPASGSAPSGGAGSAAGAAPSRRETPAQPVPRTERPPAPER 423 Query: 389 -------------------------VPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 ++ P+ A +V ++ AAR+ Sbjct: 424 GAPSRAAAEPPAASAARGERERGSAARAADEAGPESAGSVASGSAEAEPGAARRGAPATD 483 Query: 424 GATKAKKSEPAA---------ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + ++ + A P A V P + E A + Sbjct: 484 APARRQQPDARPGGGDDVEGRGAGAGPEAEEAPGSAEPPRSEVSDEEAPRSGEPAAGQSR 543 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA-------------AEAIERD 521 + P + A A ++ A R Sbjct: 544 SEVSDEEAPRSEVPAEGPPHPQEAAAGRTPSEAPAAGPVSAAPQPDPSPLTGTDAATVRR 603 Query: 522 PWAAQVSQLSLPKLVEQVAL---NAWKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEAL 576 W + LS + V + S + L + N + L AL Sbjct: 604 RWPEVLETLSGIRRVTWTLVAQNAQVASISAGVLELAFATEGLAVTFRNGTHAEALERAL 663 Query: 577 SMLKGSTVELTIVEDDNPAVRTP 599 G V + D P Sbjct: 664 HETLGLDVRVRATIGDAAPTSPP 686 >UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C46EC Length = 614 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 182/587 (31%), Positives = 282/587 (48%), Gaps = 25/587 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V+AR++RPQ F++++GQEHV AL N L GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 16 AYTVVARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKA 75 Query: 62 LNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC T TPC CD+CR + G VD++EID AS KVE+ RDL NV + PARGR Sbjct: 76 LNCLKTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPARGR 135 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS +FNALLKTLEEPPEHVKF+LATT+ QK+P+TILSRC +F + Sbjct: 136 YKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVG 195 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +I QL+ I+ E + AL+L+AR A GS+RD+ SL DQ +AS G ++ V+A Sbjct: 196 PGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTA 255 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT DD+ + L +A++ + + + I E RG++ L+ +++ + +V Sbjct: 256 VLGTAGDDRVIELAKAILANDPKTALDRIAEWVERGLQIGELIDQVVEYWRALMLVSCGG 315 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +R A+ + + + L + + P ++ +EM ++R Sbjct: 316 PDVRELPVSPNQHEAIRTQAKAVSLDTVLAGLEILTATKARMRGTPHVQVLLEMAVVRLC 375 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 L + P ++ P T + LA+ Sbjct: 376 RLPDLRSLSQLVQAV-----------SQPGVQFVASAASNGNPPPARPQPTPAAPLASEA 424 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + AT + SE +++ V L T R A EK P + R Sbjct: 425 AKKNGTPATAGRPSENGSSSVPAEVTATPLSDATVQTVW--DRFFRYATEKYPILSQHLR 482 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + ++ + + + E E + +A++R + L + Sbjct: 483 YASSYAIFGPNALAVRFPTSYANAKKECEGEASLARFQDALKRVTGQPVSIRFELDRSPN 542 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 L + + + + G+ +A + G+ + Sbjct: 543 AQPLAGPQSA-------AVAAPTERKRSLGSLPMFKKA-HEVFGAQI 581 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 37/431 (8%), Positives = 114/431 (26%), Gaps = 32/431 (7%) Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR--- 291 A+ L + L V+ +++ + + ++ ++ R Sbjct: 153 NALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVGPGKIFEQLKRIVEREGH 212 Query: 292 -------IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY-----QTLLIGRKEL 339 + + + ++ + + ++ + + T+ + ++ K + Sbjct: 213 QADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTAVLGTAGDDRVIELAKAI 272 Query: 340 PYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 A D + ++ L + V + ++P P Sbjct: 273 -LANDPKTALDRIAEWVERGLQIGELIDQVVEYWRALMLVSCGGPDVRELPVSPNQHEAI 331 Query: 400 APTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + + + + R S + + Sbjct: 332 RTQAKAVSLDTVLAGLEILTATKARMRGTPHVQVLLEMAVVRLCRLPDLRSLSQLVQAVS 391 Query: 460 RPVPSALEKAPAKKEAYRWKA--------TTPVMQQKEVVATPKALKKALEHEKTPELAA 511 +P + A + + + ++ AT + E+ A Sbjct: 392 QPGVQFVASAASNGNPPPARPQPTPAAPLASEAAKKNGTPATAGRPSENGSSSVPAEVTA 451 Query: 512 KLAAEAIERDPWAAQVS-QLSLPKLVEQVA--LNAWKEESDNAVCLHLRSSQRHL----N 564 ++A + W ++ Q +++ NA+ + +S + Sbjct: 452 TPLSDATVQTVWDRFFRYATEKYPILSQHLRYASSYAIFGPNALAVRFPTSYANAKKECE 511 Query: 565 NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI 624 + + +AL + G V + D +P + + A + + S+ + Sbjct: 512 GEASLARFQDALKRVTGQPVSIRFELDRSPNAQPLAGPQSAAVAAPTER-KRSLGSLPMF 570 Query: 625 QTLRRFFDAEL 635 + F A++ Sbjct: 571 KKAHEVFGAQI 581 >UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2P9_DESAS Length = 527 Score = 321 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 137/399 (34%), Positives = 219/399 (54%), Gaps = 9/399 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R++RPQ FA+++GQ H++ L N L RI HAYLF G RG GKTS A++LAK Sbjct: 1 MAYRALYREYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C + QG +D+IEIDAAS +++ RDL + V++AP G++ Sbjct: 61 ALNCHQIKGVEPCNKCSSCVSVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFAPTGGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVHML+ +FNALLKTLEEPPEHV F+LATT+P KLP+TILSRC +F K++ Sbjct: 121 KVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFDFKSIGA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSA 239 E + +L+ IL + + P AL+L+ +AAEG LRDALS+ DQ I + ++S + + Sbjct: 181 EPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITFNNTAEISEEDIHN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LGT+++ SL+E ++ + + +I E G + + + + + + + P Sbjct: 241 LLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCVRDLLLQSIEP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A + ++ + L ++ ++ R+ +E+ L++ + Sbjct: 301 TA--IKNFSRTDQI------YSVEYLLALLDCLTELEPKMKFSSQPRVILELALIKFIYS 352 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 L + ++ P + Sbjct: 353 RRDHLLQSINTKESTEIQNNQDMRVSLPSEVKLPADDQE 391 >UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Tax=Marinomonas sp. MED121 RepID=A3YHQ6_9GAMM Length = 823 Score = 321 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 238/606 (39%), Positives = 331/606 (54%), Gaps = 12/606 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F ++ GQ+HVL AL N L R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFIELAGQDHVLQALVNALKQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCE-TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE GI+ PCG C +C EI +GRFVDLIE+DAASRTKVEDTR+LL+NVQY P RGR Sbjct: 61 CLNCETNGISPEPCGTCGSCVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQYTPTRGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FKVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLPVTILSRCLQF+LK + Sbjct: 121 FKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMS 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + LE +L E ++++ L + +AA GS+RDALSLTDQAIA G+G +S V++ Sbjct: 181 PGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAFGNGHISETDVTS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG ++ Q + L++A+V+++ ++ L+N+ A ++ A+ +L LLHRIA+ Q P Sbjct: 241 MLGLVNQAQVVGLLDAIVQSDAANLLKLVNDLADYQPDFVAICASLLDLLHRIAIEQQVP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 AL + + +++ +A+ +P IQL+YQT+LIG+++LP A + G EM LLR +AF Sbjct: 301 GALEDQLGD-LAKVKLIAQQVPSEVIQLFYQTMLIGKRDLPLAHSPKAGFEMLLLRLIAF 359 Query: 360 HPRMP---LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P P +A + + Q T P+ ++ A Sbjct: 360 RPAQATSVSTSPVALVTHTPESTSSASDASEPLIQNEIDSSVQEITAKYPDVKHEIDQAI 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 V+ + K + +P+ N L+ Q A+K + Sbjct: 420 SVATDVEKNLEPLKPLTNEPSTNKPLINKTLKGEGDKATIDQQGEQKDETLNVTAEKHSP 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEH---EKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A+ V Q + T + + ++ I +D + Sbjct: 480 VNSASASVSSQTTEMDTKPPFEADEKPKVLDQAAAKEKMADLNKIMQDQGETKPDSAETL 539 Query: 534 KLVEQ--VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 V + +A + V L R + LS + L Sbjct: 540 ASVTETKLAAKELDSLPEQDVEASLNEDDAAAQQRQTPA--STGLSQQTQTDQALNNDAS 597 Query: 592 DNPAVR 597 ++ + Sbjct: 598 EDSGLE 603 Score = 83.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 90/256 (35%), Gaps = 5/256 (1%) Query: 387 TQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAA 446 + A + A+ V G+ + + +++ A Sbjct: 569 AAAQQRQTPASTGLSQQTQTDQALNNDASEDSGLEVDGSEDGDLEDSDSEDDIELIDDHA 628 Query: 447 LERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKT 506 ++R A + +Q++ + + EA KA + + + ++ Sbjct: 629 MDRSAELVAVMQSQTIEVEEIAPITETEALVEKA----IATNLEDVSYTKAQIIVQPALG 684 Query: 507 PELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNA-VCLHLRSSQRHLNN 565 ++ + W +L L LV+ + +N+ E+ + L + H+ N Sbjct: 685 EKVEPIDHFSKMTMQMWWLIAPRLPLTGLVQNILMNSCMLEAGEQGIKLEVPLEYGHMLN 744 Query: 566 RGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ 625 + +++ A+S + V L I ++ + T E+ + + + +A E + A +Q Sbjct: 745 QVRYEQIQGAISHYFDAVVPLIINTVEDVSGVTAEEFAASKRAQAMQEAIEHLNAHPIVQ 804 Query: 626 TLRRFFDAELDEESIR 641 L +L +S++ Sbjct: 805 ALSSTMGGQLIYDSVK 820 >UniRef50_B5YKX9 DNA polymerase III subunit gamma/tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX9_THEYD Length = 512 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 139/384 (36%), Positives = 225/384 (58%), Gaps = 2/384 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LARK+RPQ F+D+ GQ+ V+ L N L G+I HAY+FSG +GVGKTS AR+LAK Sbjct: 1 MEYLGLARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C +C I++GR + +IEIDAAS T VE+ RDL +N++YA A G + Sbjct: 61 ALNCIDSQ-NKPCDKCPSCVAIKEGRAMSVIEIDAASHTSVENIRDLRENIRYASAEGFY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS+ +FNA LKTLEEPP HV F+LATT+P+K+P+T+LSRC K + + Sbjct: 120 KVYIIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRIPI 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ +L+ I N+E+I AL +A +EGS+RDAL++ DQ + V+ V+ + Sbjct: 180 NLIKQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFT-ENVTQDNVNLL 238 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G D + L E +++ N E+++ + E G +++ L+ +++ + + +++ + Sbjct: 239 IGGTDVNVLYELTECLIDGNREKIILKVEELNNFGTDFKRLVGDLINFIRNTLISKITKS 298 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +L + + + + L+ + + R+ E+TLL+ Sbjct: 299 FKLYISESEASLIEKLNKKTSEEHLVVLLKELINSEFAIRSSFFPRVIFEITLLKLSFLA 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVM 384 + + + +P+ P ++ Sbjct: 359 HFKNIDDIIEEAKKKSPLQPPSLP 382 >UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT09_EIKCO Length = 754 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 233/624 (37%), Positives = 321/624 (51%), Gaps = 13/624 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+TFAD+VGQEHV+ AL N L GR+HHAYL +GTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALGKGRLHHAYLLTGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCET PCG C +CR+I+ GRFVDL+EIDAAS T +++ R++L+N QYAP G++ Sbjct: 61 SLNCETPHEGEPCGQCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYAPTAGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNA+LKTLEEPPEHVKF+LATTDP K+PVT+LSRCLQF L+ + Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ L H+L E I +E AL LL RAA GS+RDALSL DQAIA G G V+ V M Sbjct: 181 QQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLLDQAIAMGSGSVTEADVRQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G +D SL++A +G ++A E A R I +++ L E+ LL ++A+++ PA Sbjct: 241 IGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAIGFDSALSELALLLQKLALIKTIPA 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D +++LA + IQLYYQ ++ G+++LP APD G MTLLR LAF Sbjct: 301 AVPADDPER-DTLQQLAGQLGDEQIQLYYQCVIHGKQDLPLAPDEYAGFVMTLLRLLAFA 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P PE + S + + A PQP P+ A +Q + Sbjct: 360 PLAAAELPEGSQISGSELHDPAPKPRPAATPQPDKPPRLAENHIAEAPPAQAEPRLPESG 419 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 S NN + A+ + P + + + A Sbjct: 420 HNSQNEHGSFSGSPNNNGRLSQNNPLPQATATAARHTERLPENISGSPNSRHELSPNPNA 479 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + P + + A + + P A ++ +A Sbjct: 480 SGNPAPGLAEPGRPYPSEPQPTQTEAVPTAFESNPPWDDAPPPAGFETRQPDSPPSSGLA 539 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSML---KGSTVELTIVED---DNP 594 + N N Q +A S GS + +P Sbjct: 540 ETEPSQNPANEF------PHSRNQNDSLPQHKHDAASRNESGLGSERLPETEQSGFLQSP 593 Query: 595 AVRTPLEWRQAIYEEKLAQARESI 618 +T + A E A + Sbjct: 594 NGQTEAQSAAAETPEHTGTAALPL 617 Score = 92.0 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 8/310 (2%) Query: 338 ELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 L + T R P P + + P P Sbjct: 438 RLSQN-NPLPQATATAARHTERLPENISGSPNSRHELSPNPNASGNPAPGLAEPGRPYPS 496 Query: 398 QQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 + PT T+ + ++ + ++ + R Sbjct: 497 EPQPTQTEAVPTAFESNPPWDDAPPPAGFETRQPDSPPSSGLAETEPSQNPANEFPHSRN 556 Query: 458 QARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKT-PELAAKLAAE 516 Q +P A ++ E+ P +Q + +P +A PE A Sbjct: 557 QNDSLPQHKHDAASRNESGLGSERLPETEQSGFLQSPNGQTEAQSAAAETPEHTGTAALP 616 Query: 517 AIERDPWAAQVSQLSLP-KLVEQVALNAWK---EESDNAVCLHLRSSQRHLNNRGAQQKL 572 + D W V+ ++ + A + + + + L + + + +R Q++ Sbjct: 617 LPDADTWPHIVAAIAPKIGAAQMSAQHTACLGYDPQQHLLTLAVAEAGQVSISREHIQRI 676 Query: 573 AEALSMLKGSTVEL-TIVEDDNPAV-RTPLEWRQAIYEEKLAQARESIIADNNIQTLRRF 630 + L+ G V + TI + TP +Q + + QA+ + D+ Q + Sbjct: 677 EQHLAAAYGHPVSIRTIDWPADGNAAETPAMRQQRLRQAARDQAQSLLEQDSAAQDILNL 736 Query: 631 FDAELDEESI 640 F A ES+ Sbjct: 737 FGARWLPESL 746 >UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q394_9BACT Length = 558 Score = 320 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 155/549 (28%), Positives = 249/549 (45%), Gaps = 9/549 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR++RPQTF+D+VGQ ++ L N + R+ HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSYVVLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G T TPC VC+ C+ I +G +D++EID AS +++ R++ NV +AP+R R+ Sbjct: 61 ALNCVNGPTDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFAPSRARY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++Y+IDEVHML+R +FNALLKTLEEPP HVKF+ ATT +LP T+ SRC +F K + V Sbjct: 121 RIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISV 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I L I E E AL +A+ A+G LRD+ S+ DQ + D V++ V+ + Sbjct: 181 NDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFCDDNVTSADVNYV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +DDD+ S+ E V + + ++++ G + ++L L + + Sbjct: 241 LGYIDDDKIYSMFECFVNKDTSGALRIVDDILNEGKTPAEFIDQLLLRLRDLLVFSSCGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ ++ + Q L + R + +R+ EM +++ Sbjct: 301 EAVWAEYDE-SFIQRFEKSFSGDTLMYMIQMLSVMRIRSTDSLLQRISAEMAIIKLCRME 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + P + + + E + + Sbjct: 360 SIGALSGLIERITTLEEKLEQVDNIPGKRGSAILLPAESFARQTVSEKSIEEGDVI---- 415 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 K +K P A V L+ + A L + A + Sbjct: 416 ---PPAKEEKITPGIAMEKNEVWGDILKSIQKKKKSTWAFFKEGRLVSSDAGVLVVAFPR 472 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV-SQLSLPKLVEQV 539 +++ K L + E P + + +P + L +Q+ Sbjct: 473 KFLFQKERLEQPEEKKLIENCAKEVVPGFMELKLVLSEKEEPEENRQSQSLDNGGGAQQI 532 Query: 540 ALNAWKEES 548 + E + Sbjct: 533 NDTVFSEPA 541 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/162 (7%), Positives = 42/162 (25%), Gaps = 6/162 (3%) Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ--V 539 P + K++++ E + + W + + K Sbjct: 394 LPAESFARQTVSEKSIEEGDVIPPAKEEKITPGIAMEKNEVWGDILKSIQKKKKSTWAFF 453 Query: 540 ALNAWKEESDNAVCLHLR----SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 + + + L ++ + + +EL +V + Sbjct: 454 KEGRLVSSDAGVLVVAFPRKFLFQKERLEQPEEKKLIENCAKEVVPGFMELKLVLSEKEE 513 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + Q +++ ++ ++ FD + + Sbjct: 514 PEENRQSQSLDNGGGAQQINDTVFSEPAVKKTLELFDGRVIK 555 >UniRef50_C5C8M2 DNA polymerase III, subunit gamma/tau n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C8M2_MICLC Length = 1159 Score = 320 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 159/681 (23%), Positives = 262/681 (38%), Gaps = 59/681 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP F DV+GQ+HV L L+ R++HAYLFSG RG GKT+ AR+LA+ Sbjct: 1 MS-TALYRRYRPDRFEDVIGQDHVTVPLRTALAKDRVNHAYLFSGPRGCGKTTSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC G T TPCG CD+CR++ G +D++EIDAAS VED R L + +AP R Sbjct: 60 CLNCAQGPTPTPCGECDSCRDLATGGPGSLDVLEIDAASHGGVEDARGLRERATFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+ +IDE HM++ FNALLK +EEPPEH+KF+ ATT+P K+ TI SR + + + Sbjct: 120 RYKILIIDEAHMVTAAGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 E + LE + EE ++ E L L+ RA GS+RD LS+ DQ IA + +GQVS + Sbjct: 180 PPEPLIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGAQEGQVSYELA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++LG + +++A+ + V +++ G + + ++L + + + Sbjct: 240 VSLLGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARA 299 Query: 298 SPAALGND----MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 P G R+ A + ++ + ++ A R+ +E+ + Sbjct: 300 LPEEAGAILHGMPEDQVRRLSAQAAQLSRAELSRLADITNLALTDMVGATSPRLHLELLM 359 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R L ++ P + + P + Sbjct: 360 ARLLLPASDETHRGLAARLEALERRLELGGAAPVEDGAPEGTTTPTRSGTPAADGGGSAG 419 Query: 414 AAR--------------QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 A + T + A A E A+ Sbjct: 420 NAEGSGPLTGAALARAAMRRPEESAPTASTAPPERWTPPAPQSVAEAPEGDAAAGATGSE 479 Query: 460 RPVPSALEKAPAKKE---------------------AYRWKATTPVMQQKEVVATPKALK 498 RP + P E + P Sbjct: 480 RPQQAPQPGRPEPAEVGARSEDVRRPEAGNRPEPEGRPEPEGRPQAQDSTGAAPAPAHGP 539 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVAL---NAWKEESDNAVCLH 555 + +P A + + R W ++ L + + + + + + + Sbjct: 540 EETAAPSSPTPAPAASQVEMIRRAWPDILAALEDASRLVWMLVKDNASVAGYDGSLLTIG 599 Query: 556 L--RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN-----------PAVRTPLEW 602 ++ L RG + L EA+ + G L ++ + P Sbjct: 600 FQQDGPRQSLLGRGGDRVLGEAVHQVLGIRPRLDLILGGDAPTGDARAQSGTRPAGPART 659 Query: 603 RQAIYEEKLAQARESIIADNN 623 + + A N Sbjct: 660 DRPERPASQQSRPDRPAAQPN 680 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 127/406 (31%), Positives = 213/406 (52%), Gaps = 25/406 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L RK+RP+ F++VVGQ HV T N L G I HAY+F+G RG GKT++AR+LAK LN Sbjct: 2 QALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C+ C+ I+ G F+D++EIDAAS +++ R + + V Y A+G +KVY Sbjct: 62 CENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K L +E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNLTIEDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +LE + +E+I AL +A+ A G +RDAL++ +Q S ++ + V LG Sbjct: 182 IKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKDITIEDVRETLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + + +++++ + ++ +I + G + E L+++L + + S Sbjct: 242 VPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLE---EMILKIESGDY-- 296 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 ++ + + L K++ Y+ ++ + +++ L + P Sbjct: 297 --------------------ELIEFLKPLSEILKDIKYSEEKLILIKLGFLSVMKLKPPR 336 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 + V + P + + + ++ + Sbjct: 337 ENIKKNVEKAEENEPIPESKLNDKDLESTQNVENKEKKIENKENIS 382 >UniRef50_C2D9N9 DNA polymerase III gamma and tau subunits n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9N9_9ACTN Length = 742 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 148/620 (23%), Positives = 249/620 (40%), Gaps = 52/620 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L K+RP F DVVGQ HV++ L N + +I HAYLF G RG GKT++ARL AK L Sbjct: 2 ESLYTKYRPAVFQDVVGQTHVVSTLQNAVLEHKIGHAYLFCGPRGTGKTTMARLFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKV 122 C + PCGVC+ C+ I QG D+ E+DAASRT V++ R+ ++D V YAP +G +K+ Sbjct: 62 CTSPQNGLPCGVCETCKNIAQGIHPDVFELDAASRTGVDNVREEIIDRVNYAPLKGAYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+L TT+P K+ TILSR ++F + ++ Sbjct: 122 YIIDEVHMLTASAFNALLKTLEEPPSHVVFILCTTEPHKILATILSRVMRFDFHRIKSDE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + EH + + AL+L+ A+G +RDALS +Q G G +S + V MLG Sbjct: 182 MFVHLQKVCTLEHFSADDEALKLIVEHAQGGMRDALSSLEQISVFGKGVISKRLVEDMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +LV+++ + +R+ I +G E+ + + + + Sbjct: 242 ATSQTNLTALVQSLALRDTKRLFEEIASLCEQGKSIVQAACELAEYMRDVYLAKTLMEQH 301 Query: 303 GNDMAAIE--------LRMRELARTI-PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 E ++ A+ I ++ + A + R+ E+ Sbjct: 302 LTLDDYAELFTCGVATSQLEADAQAFKNVRHIAYVLNVVVDMISHIKTAANPRLTFELYS 361 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R + ++ Q + T + ++ + Sbjct: 362 CRMIHPVVTNSSSALIKRLEAVETQLAQLTSRSPQQSGLSAAHAPVQHTARVQSASNTSV 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + Q A + + + A V +QA Sbjct: 422 QQSRYQPLQQPAQQRVQQSIQQQAQQPIQQQAQQMPQQPVQPPIQAH------------- 468 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL-SL 532 + L+ A ++ + W V +L + Sbjct: 469 --------------------TPQPAQQPSQAIAAPLSQGTADKSQLQRMWKQVVDKLMEV 508 Query: 533 PKLVEQVALNAWKEESDNA-----VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 + NA D + + + + L + ++ + G+ Sbjct: 509 NPSRGSLLTNAEIRSDDGTRLVIELPIGSSFATKMLAEPSISALVQSCVAPIFGNR---K 565 Query: 588 IVEDDNPAVRTPLEWRQAIY 607 +V ++ +T + A Sbjct: 566 LVYAESSLQQTNIARAHAAQ 585 >UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAJ4_9FIRM Length = 593 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 135/431 (31%), Positives = 222/431 (51%), Gaps = 2/431 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L R +RP +F +V GQ+H++ L N + +I HAYLF G RG GKTSIA++ AK Sbjct: 7 MGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFAK 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE+ PC CDNC ++ G D+IEIDAAS VE+ R+L++ V+YAP +G++ Sbjct: 67 VINCESKEH-KPCLQCDNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYAPLKGKY 125 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHM+S +FNALLKT+EEPPEHV F+LATT+P K+ TI+SRC +F + Sbjct: 126 KVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPK 185 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I ++ IL +EHI + ++L+A+ A+G LRDALS+ DQ IA + Q ++ + Sbjct: 186 NEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYATNHIELQHINEI 245 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + + L + +M +++ +G++ L V+++ LL + + + Sbjct: 246 YGITTVQEKMKLFHHIFNNEPVDLMDMLDGMLEKGLDIPRLTVDLIELLKESIIFEYTKD 305 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + E + + L+ ++ +A + E+ LL + + Sbjct: 306 SSLLHSLSNEQAVEFITSK-SLKARFEMIHLLMDTYEKYRFASNVGSYFEVCLLEMINCN 364 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + ++ + T + T +T ++ + Sbjct: 365 GISELQIEKTEPKAVDAKKNVSRETLSNQNETINDERDTIETEFECDTAEEIFEQASEEI 424 Query: 421 RVQGATKAKKS 431 V K + Sbjct: 425 TVNEDKKGQAP 435 >UniRef50_C8P1Z8 DNA polymerase III, gamma and tau subunits n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1Z8_ERYRH Length = 600 Score = 320 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 151/600 (25%), Positives = 270/600 (45%), Gaps = 17/600 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L RK+RP +VVGQEHV+ L N ++ +I HAYLF G RG GKTSIA+L A+ Sbjct: 1 MSYQSLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE CG CDNC + G DLIEIDAAS V++ R L++ V+Y P G++ Sbjct: 61 AVNCENPDQV-ICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLKTLEEPP HV F+LATT+ K+ TI+SRC ++ + Sbjct: 120 KVYIIDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGE 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I +L+++LN E++ E +L+A + G LR+AL++ +QAI D Q++ + Sbjct: 180 VDIAKRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + D ++L +++ E E ++ I + + + L+++++ L + + + Sbjct: 240 NGIITDQDKINLFDSIREQQMEALVNQIAMMNEKSVNIDRLMMDLVSGLKDSIIYSHTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA T+ + + LL ++ ++ ++ E+ ++ Sbjct: 300 DAL-VNENSLMFIHYLAETLQVHERLKVIEKLLSYTDKMKFSQNQSTYFEVAMVDVFNSF 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + S + P P S + + Sbjct: 359 SNKNVNLNQQTELTMTAEQIYRAENNIKPQKPKTSTQIEVIKKPAPVEESVPFEEDKDID 418 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERL----ASVTDRVQARPVPSALEKAPAKKEAY 476 V+ + + + + + ++ + + ++ + S E K + Sbjct: 419 SVEEEIVIETQVLSEVSTEQTESFLTVDDVVRYMVTADKAIRIQDDASYQEIDRYKVDLK 478 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE----------RDPWAAQ 526 +A+ + K V+++ AL +E A+ + A Sbjct: 479 WARASRLISGGKLVLSSHFFAVIALINEAAVREVAEQRNQIELYNFSKVLFGDEKQILAI 538 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVEL 586 ++ + + + L+ + + + + L + + L G VE+ Sbjct: 539 TQEMYSEAVSKFLVLSKENALPEPMEPKTFHDTTQVEEREQKDESLEK-VKELFGGIVEI 597 >UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD6_9FIRM Length = 655 Score = 320 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 157/664 (23%), Positives = 268/664 (40%), Gaps = 41/664 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ L R WRPQ+F ++VGQ + L N + ++ HAYLF+G RG GKTS A++LAK Sbjct: 1 MSYQALYRVWRPQSFDELVGQPLIAETLKNAVKNQQLSHAYLFTGPRGTGKTSAAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C+ C+ I G+ D+IEIDAAS VE+ RDL D V+YAP++ + Sbjct: 61 AVNCPHQTDGNPCNQCELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKVRYAPSQATY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP V F+LATT+P K+P TI+SR +F + Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQRFDFGRISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + ++++IL ++ I E AL ++ARAA G +RD+LSL DQA++ V+ Q+ + Sbjct: 181 ADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSYNRSAVTVQSALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+L + + A+ +G + ++++ + G + + E++ + + S Sbjct: 241 TGSLSQLVYIDYLTALQAQDGPKALSILQASLQEGKQANRFVEELILFCRDLLLTLNSKD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A +R+ + L ++ +A + VE+ + Sbjct: 301 NFTLLTEAELKPLRQAGDNC---FYYNLIERLNQALNQMRFATQADLFVEVATIELAQEV 357 Query: 361 PRMPLPEPEVPRQSF----APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P+ A A + + + + Q P+ P Q R Sbjct: 358 ANEPVASGLESGTVADLVRQVQALEAKVRQLEAQLRAGAPAQAVPSPQAPAEDDQPRVPR 417 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 ++ + A A + + + P + A Sbjct: 418 ERPAGQRQAYHLDTDAIYAVLNEATRQDVSQLKSGWAAWLESLPPQDRVRLTGAEVQAAG 477 Query: 477 RWKATTPVMQQK--EVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + Q V + L + +A + + W+ + Sbjct: 478 PERILLAFKSQDFCGRVQQDADFVQELSRQLARHFDRPVALAFVLQSEWSQVRQTYKV-- 535 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEAL--SMLKGSTVELTIVEDD 592 +++ + + + L + + S S ++ + + Sbjct: 536 ---------LYDQAGGPIKIGAVAEPIRLALEAEPLEAEQTSPPSDDFQSLEQVMMDLPE 586 Query: 593 NPAV------------RTPLEWRQAIYEEKL-------AQARESIIADNNIQTLRRFFDA 633 P TP + +E L AQA + + F Sbjct: 587 APEASEPGTDLFGLPMETPEPAQPVADQEDLPTVDPVFAQAPDQDSLPPVVSQALALFGQ 646 Query: 634 ELDE 637 ++ + Sbjct: 647 DVVD 650 >UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C334AE Length = 726 Score = 320 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 134/371 (36%), Positives = 211/371 (56%), Gaps = 5/371 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L +K+RPQTF +VGQ+ ++ L+N + RI HAYLF+G RG GKTS AR+ AK + Sbjct: 4 YEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSI 63 Query: 63 NC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + +PCG C+ C+ I +G +D+IEIDAAS T V++ R++++ ++AP + R+ Sbjct: 64 NCLASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFAPMQLRY 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HMLS +FNALLK LEEPP+HV F+LATTDPQ++ TI+SRC +F + + + Sbjct: 124 KIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAI 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I L I EE+I E AL L+A+ + G LRDA SL DQ G+++++ V+ + Sbjct: 184 EEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFT-GKINSEKVNDL 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + + LSL++A+ N + ++ + +G E +L + + + ++SP Sbjct: 243 VGLISERDLLSLLQAIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQ 302 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L I + A I Q L +L + +E+ LL L Sbjct: 303 CPELTMISKDIWKELCIEAEFWKTDRILKNQQKLRNSEIQLKSTTQPYLWIEIILLDLLQ 362 Query: 359 FHPRMPLPEPE 369 + Sbjct: 363 EEKEFSIDSNN 373 >UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI02_PETMO Length = 467 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 122/392 (31%), Positives = 205/392 (52%), Gaps = 25/392 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP+ F +++GQ HV+ N L+ + HAY+FSG RG GKT+ AR+LAK Sbjct: 1 MNNN-LYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PC C+NC I F+D+IE+DAAS +++ R++ D+ Y P G++ Sbjct: 60 VLNCKDPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML+R +FNALLKTLEEPP HV F+LATT+ +K+P TI+SR + K L Sbjct: 120 KVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I L++I + E I +E AL+++A+ A+G +RDA+S+ +Q G+ +++ Q + Sbjct: 180 NEIVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKKITHQDTLDI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D++ + +E + + + +A + G + E LL + + + + + Sbjct: 240 LGLFDENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIFDSLINEK--- 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +++ T K+L Y+ ++R+ ++ +L + + Sbjct: 297 ---------------------RSNLIHLMGTFNDILKDLKYSENKRLIFDVEILDFMHKN 335 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 + P + Sbjct: 336 STTSSTISYDKETTPKRKQVATESVPKETQHP 367 >UniRef50_C2BD41 Possible DNA-directed DNA polymerase n=2 Tax=Anaerococcus RepID=C2BD41_9FIRM Length = 560 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 120/462 (25%), Positives = 223/462 (48%), Gaps = 4/462 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+ F V+GQ+ V+ L N + HAYLF+G RG GKTS A++ AK Sbjct: 1 MT-KALYRQYRPKVFEQVLGQDKVINVLKNQIKNKNFSHAYLFAGERGCGKTSAAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC +PC C+NCR IE+ +D++E+DAAS +++D R+L DNV Y PA ++ Sbjct: 60 AINCLNPKDGSPCLECENCRAIEEETSLDVVEMDAASNRRIDDIRNLRDNVIYPPANLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP+H+ F+LATT+ K+P TILSR +F +D Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTEIDKIPKTILSRVQKFEFNKIDS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++++ E A+ L+ A+G++RDALS+ DQ ++ + + V + Sbjct: 180 SKIKEQINIILKDQNVKMENEAIDLIITKAKGAMRDALSILDQVLSFNKKEFMLKDVEFI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG++ ++ LV +++ + + + + + G ++ ++ + ++++S Sbjct: 240 LGSVGFEKINKLVTSIIVKDQRQSLNDLLDIRNDGKSNLDIVDSLINFYRDLMVLKVSGD 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM---GVEMTLLRAL 357 + + ++E I I L ++ + + + + + L+ + Sbjct: 300 DMDFENQDRLNFLKEKVDEISLDRILTSLDVLNDYCIKINNSSNTDILSEVLVLRLIDTV 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + E V + ++ + T L E Sbjct: 360 DTNSLRSRVEKLERLDHSNIVDTINSIINVRLENFNPVTSKHDRTYDLEEIGPNKSDDVV 419 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 K+ ++ ++ + ++ Sbjct: 420 DNHISNVGEIVTKTSIGNDISEDKESSKSISIDPHLMHDIRE 461 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 129/454 (28%), Positives = 227/454 (50%), Gaps = 2/454 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP+ F DVV QEH+ L N + ++ HAY+F+G RG GKT+ A+++A+ + Sbjct: 2 HIALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PC C+ C+ I + +D++EIDAAS T V D R + D V+Y P+ + +V Sbjct: 62 NCLNPKDGNPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKRRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP H F+LATTD QK+P TILSRC +F K + V+ Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L+ ++ E I+ + +AL L+++ AEG+LRDAL++ ++ + + D +S + V+ +LG Sbjct: 182 IYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTSDEHISYKFVANLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + A+VE + + + ++N G++ L E + +L +++L + Sbjct: 242 VTSTEIVKEYLNAIVENDSNKGLRVVNRLWDEGMDVNTFLEESIKILRNALILRLGAQNV 301 Query: 303 GNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 DM + + L+ + I + L+ ++ + ++ +E+ ++ Sbjct: 302 LLDMMDEDKSFVTNLSNLLDSNRIVSVIKMLIDTANQIRWTRFPKVLLEINTIKLCDMQM 361 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + P+ + + + E + ++++ Sbjct: 362 DTSFEGLNERVKKLEIKLSQILENPSLLQSLKT-EKTLSLSTAAGEKSGSSEVNKEKMLL 420 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTD 455 A A L ++ Sbjct: 421 PDADVSEVLERWAEVKEAVKEEKPGLSQVLQSAS 454 >UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=15 Tax=Betaproteobacteria RepID=Q1LLG8_RALME Length = 795 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 215/513 (41%), Positives = 280/513 (54%), Gaps = 6/513 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F +VGQEHV+ AL + L R+HHAYLF+GTRGVGKT+++R+LAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 GLNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNC GITA PCG C C EI+ GRFVD IE+DAAS V++ LLD YAP Sbjct: 61 ALNCTGPDGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAIYAP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 GRFKVY+IDEVHML+ H+FNA+LKTLEEPPEHVKF+LATTDPQK+PVT+LSRCLQF+L Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K + I L+HIL +E I+H+ AL+LLA+AA GS+RDALSLTDQAIA GQVS + Sbjct: 181 KQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQAIAYSAGQVSEE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV MLG +D + L++A+ +G ++ + + A R + + L ++ LLH++A+ Sbjct: 241 AVRGMLGAIDQSYLVQLLDALAAEDGATMLGIADSMADRSLSFAGALQDLGSLLHKVALA 300 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 Q PA++ ++ +R LAR + QL+YQ +GR EL APD G MTLLR Sbjct: 301 QAVPASVQDEWP-EAEDVRRLARQFDAQETQLFYQIANLGRSELALAPDEYAGFTMTLLR 359 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 LAF P + T A A P+ +V Sbjct: 360 MLAFRPSTAPASSVGGQGGGGQQVVRPRPAGTTSAAPSPRAMASAVAEPVAAEPVKVAPV 419 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 T A + AA +A P +AL A Sbjct: 420 VAPAAPTAPITAAAPAASAAPAMPAVPAKSAEPAPPQADVDTSMSPARAALAAARQASAG 479 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 + + A + Sbjct: 480 RAGRPMSAAPNAGAAAAASSRPAAQPLRPPSAS 512 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 76/289 (26%), Gaps = 3/289 (1%) Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 A P P + A + V P +A A P P Sbjct: 507 RPPSASRPATTAAPAPAPAVAPAAAPVVTPVVTQAVAPSKAAAAPVAAARPAPVAKPAPQ 566 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + A + PV + A + Sbjct: 567 PEAKSVPPWEAAGASDVPPWEEMPPDLPVIGPYDSDPGYDPSFGGFDNGFDSDSADRAPR 626 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A + T + A + A + A + + W + L L Sbjct: 627 AARKPAPTQSAAKPISKPEPEPAAQLAPAVPQVAPSAGEDGTPPVFTGDWPEFAATLPLK 686 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 L +Q+A + LHLR + ++L AL V + V Sbjct: 687 GLAQQLAHQSELHRVVGR-TLHLRVPVAAIAEANVAERLQAALVEHFRVDVRVQCVVG-- 743 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 T A E+ +A I D +Q L R F ++ SI+P Sbjct: 744 GVTHTAAAVDAAARAERQREAEAEIDRDPFVQGLLREFGGQIVPGSIQP 792 >UniRef50_Q31PS7 DNA polymerase III, tau subunit n=4 Tax=Cyanobacteria RepID=Q31PS7_SYNE7 Length = 652 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 179/647 (27%), Positives = 285/647 (44%), Gaps = 22/647 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQE + L+ L+ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNCETG--ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC+ TA+PCG C+ CR I +G +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCQQSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 121 RFKVYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L+ I +E I EP A+ L+A+ A+G LRDA SL DQ V+ +AV Sbjct: 181 PLQAMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLL-PPPVTPEAVW 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG + + Q L L+EA+ + E ++ LI + RG E +L + + + + + Sbjct: 240 DLLGAVPERQLLQLLEAIAANDPEALLTLIRQLLDRGREPLTVLQNLTAFSRDLLIARTA 299 Query: 299 PAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 P A + A P I Q L ++ R+ +E+ LL Sbjct: 300 PQRRDLTTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVALLG- 358 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 P P P APV + VP + S+P V +P + Sbjct: 359 --LLPSAQAPVTTAPPAIAAPVTRPVSIPAAVVPAETPSSPAAVAPVAIPVAPAVTTTPP 416 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + A + E + + + L R+ A+ P + Sbjct: 417 EVPAIAAAAPEPLNLEELWQRVLINIASRGTQMLLQQQGRLLRCQAGQAVVSVPPNWLSI 476 Query: 477 RWKATT--PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Q + ++ ++ IE A + Sbjct: 477 VQGKRNLLAEAFQTVLGQAIAVELESSSGTDPNPVSLPPPPVVIEMPRSPASPAVTPRSA 536 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + A ++ + + + + + ++ + ++ + P Sbjct: 537 PPSEPIAAAPRQPAIATIAPPPVAVAPPVPPPAPSPPIPQSKPVAIATSPSKSPEVVPAP 596 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQT---LRRFFDAELDEE 638 + TP + + D ++ L +FF+ E+ + Sbjct: 597 QLETPPAALRPLA---------DWELDPGLKAARSLAQFFNGEVVSD 634 >UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=B1VIS6_CORU7 Length = 1102 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 158/573 (27%), Positives = 251/573 (43%), Gaps = 10/573 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG CD+C + G +D+ E+DAAS V+D R+L D YAPA R++V Sbjct: 62 VEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYAPADSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FN LLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNYPFRLLTPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 +R L I+ +E E L+ RA GS RD+LS+ DQ +A + V+ Q A+L Sbjct: 182 MRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGPEGVTYQRAVALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D EA+ + + A++++ G + +++L + +VQ P A Sbjct: 242 GVTDSSLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDLLDRFRDLLVVQAVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A + +R+ A + P + + G ++ A R+ +E+ R Sbjct: 302 FERGLVDVPAQEQDALRQQAEALGPATLTRCAAVVNDGLSQMRGATSPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M + ++ P S A P + + R Sbjct: 362 LPAAGMTVEALAQRVEALEQGTGVRAAGPMGASGGLASPAVGAGASPTGDASGLSSGKRY 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + R + A+ S + A + + E + + + Sbjct: 422 ERPRRRKASAEAASAESGAAEPQNAVSQGAEPKGAQPQGAAPQQPEQPGNADAQPGQ--S 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 +A P + + + + + AA EA + A + + Sbjct: 480 AQAGAPAQSGQPGQQAADQSGEQADGQSAAQGAAPATQEATSQPEKPAVQETAEVA-RAQ 538 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQ 570 Q A NA +++ + ++ + Sbjct: 539 QPADNAQEQQGAEPAAQDVNAAAQSARQESNAA 571 >UniRef50_C2GJF4 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GJF4_9CORY Length = 796 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 157/623 (25%), Positives = 264/623 (42%), Gaps = 19/623 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E L+ RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTLVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AL + + + E + + + G +++ R+ +E+ + R Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 357 L---AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L P + AP + Q +A QA P+ S Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPTAQPQAQQPVQPQQQSAPS 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A ++ Q Q + S+P + S P ++ Sbjct: 422 APVEEKQPRQYQEYGQPSQPEQRPAQPQAQQPVQPQQQSAPSAPAEEKQPRQYQEYGQPS 481 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS---QL 530 + + + P ++Q+ + ++ + PE R W ++ + Sbjct: 482 QPEQEEHEVPELRQQWEAGRDEQPQQVESAPQEPET--STVDVETVRAKWVDILNYISRE 539 Query: 531 SLPKLVEQVALNA-WKEESDNAVCLHLRSS--QRHLNNRGAQQKLAEALSMLKGSTVELT 587 + A + D + L + + LN+ + +A+ +++ + Sbjct: 540 KKNTTARILLRGATLLDVRDGTLYLGILTGAIANRLNDAKHNADIVDAVKAETNASLAVE 599 Query: 588 IVEDDNPAVRTPLEWRQAIYEEK 610 V + T A Sbjct: 600 CVLGNKIPASTKSTTAPAPASAP 622 >UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYL7_9GAMM Length = 697 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 201/531 (37%), Positives = 289/531 (54%), Gaps = 7/531 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+ F +++GQEHV AL N + R+HHAYLF+GTRGVGKT+IAR+LAK L Sbjct: 2 YQVLARKYRPKNFHELLGQEHVSKALINAIHNQRLHHAYLFTGTRGVGKTTIARILAKCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCETG+T+ PCGVC C+ I+ GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GR+KV Sbjct: 62 NCETGVTSEPCGVCGVCQSIDSGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 YLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQKLP+TI+SRCLQF L+ L Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPLPQVA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L ILN+E I++E AL L+ +A+GS+RDALSLTDQAIA G+G V+ + + MLG Sbjct: 182 LAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSLTDQAIAFGNGNVTDEVIRQMLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 +D ++++ + + N +++ I + ++ +A+ + LH++A++Q P Sbjct: 242 LIDQADVIAILANIYQQNTQQLTQSIQLLREQVVDAKAVFDRLAETLHQLAILQALPNFD 301 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 ++++LA+ +P +QLYY ++ R+ L A +EM LLR +AF P Sbjct: 302 LQINRQQSEQLQQLAQKLPAELLQLYYDIVVKSRENLALANTPMQALEMCLLRLMAFKPL 361 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 Q + Q T ++ + ++ Sbjct: 362 H-------RNQISLRPPIANNPESQSLDSQSPDFKIVDTTPSEAIQGAKSSVLAEDSLQL 414 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 ++ ++ + + + + + A Sbjct: 415 TSEQSDNNLSDDNLLKSASNVDSIQQIIEESIQQGTEQQAFDDSHLIAIDEAAVNTPTQQ 474 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + + VA + + + + + A A+ P Sbjct: 475 TPTIEDDAVANRLSDLQPSDSHHETSVHGIVTAPAMVTQDSNPIKKNEPAP 525 >UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE8_9BACT Length = 890 Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 170/650 (26%), Positives = 281/650 (43%), Gaps = 17/650 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRPQTF D+ GQ+H+ + L N + R+ HAY+F GTRG+GKT+ AR+ AK Sbjct: 1 MTYQVLARKWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAK 60 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCET PCG C NC EI QG +D+IEID AS V+D R + + QY PAR Sbjct: 61 ALNCETPRADLNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIRQIREGAQYTPARCP 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+++IDEVHMLS ++NALLKTLEEPP H+KFL ATT+ ++ TILSRC + LK + Sbjct: 121 YKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAV 237 I +L+HI E++A E A+ ++R A G +RD LS+ DQ I+ G +S Q V Sbjct: 181 RNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSILDQMISFCSGNEIISEQDV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G ++ + A+++ ++ I+ A E L E+ L + ++ Sbjct: 241 IDVFGMSSSNELKLIASAILQNQAPALIEAIDTLAKAARNMEQLYSELFQLFRDVMILLE 300 Query: 298 SPAA---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 SP + + ++ ELA+ +Q L ++ + ++R +E+TLL Sbjct: 301 SPQQARSILDLEEVEIQQLYELAQLANNKLLQKLLNGFLDYDGKIRHTLNKRTYLEVTLL 360 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-PQPQSAPQQAPTVPLPETTSQVL 413 R + + + + Q+ + P Q + L T+ Sbjct: 361 RIMKDAHSLRVEDLLKHIQTLRKQGNLQDLEGDLPPLSITQKKNESLEARSLRPATNAEA 420 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + +A+ + + + D + + Sbjct: 421 LSIVKKPIIDTKVEAEVDTVNDTQNIGDSSASDTQNDYYEEDTAEETTPTVEATETEETI 480 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 A +P + V +A E + + +++ + ++ + Sbjct: 481 SAIVEDKESPEDALQTEVEEVALQVEAAEPVDNFQASPSTDQTPAKQERHSNSIALEQML 540 Query: 534 KLVEQVALNAWKEESD----------NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 + + + + + L S G + K S ++ Sbjct: 541 AIPTSENEDTLTKAETIFVQKDDPELSKILLQPDSEDERNIETGVETKPDAEDSEVQAEP 600 Query: 584 VELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDA 633 V T V + + + + + QA E N+Q +A Sbjct: 601 VVETEVLPEQANEQANEQANEQANVQANVQANEQANEQANVQATPELANA 650 >UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcus oceani RepID=Q3J800_NITOC Length = 529 Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 220/535 (41%), Positives = 302/535 (56%), Gaps = 15/535 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRP+ F VVGQEHV+ AL NGL GR+HHA+LF+GTRGVGKT++AR+LAK Sbjct: 1 MSYQVLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ G+ +TPCG C NC+ I+ G FVDLIE+DAASRT V+DTR+LL+NV YAP+RG + Sbjct: 61 SLNCKEGVRSTPCGKCQNCQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYAPSRGHY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHM S SFNALLKTLEEPP H+KFLLATT+P+KLPVT+LSRCLQF+L+ + Sbjct: 121 KVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSRCLQFNLRRITP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L IL E I E AL L+ARAAEGS+RDALSL DQAI G GQV V M Sbjct: 181 KAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLLDQAINYGRGQVMVADVRTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG+++ L++A++ NG+ ++ + E A ++ ++L ++L LL R+A+ QL+P Sbjct: 241 LGSIEQGDLFILLDALLAGNGQGLIEKVREICAYSVDISSILADLLHLLQRLALYQLAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA P ++QL+YQ LIG ++L YAPD EM LLR L F Sbjct: 301 TVDDI--DERGIFSSLAARTTPEEVQLFYQIGLIGSRDLTYAPDHHTAFEMILLRMLCFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P S T + Q+ + PL S + Sbjct: 359 P--------ADGASSCQALTNPKPEKTGLASSDPPLAQETTSPPL----SGNDHWPGLVT 406 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +++ A++ A R L+ S+ + R ++A + + Sbjct: 407 QLKLTAIARQLAENCALERREEGIIYLQLAPSMANLHSKRAEERL-QQALEEYYGEAIQL 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + T + +K + + +A + ++L L + Sbjct: 466 IIRIADSTLGTDTVASRRKQEDATWQQAAVESIQNDANIKALSETFNARLPLDSV 520 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 2/165 (1%) Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + PK K L P + D W V+QL L + Q+A Sbjct: 359 PADGASSCQALTNPKPEKTGLASSDPPLAQETTSPPLSGNDHWPGLVTQLKLTAIARQLA 418 Query: 541 LNAWKEE-SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP-AVRT 598 N E + + L L S +L+++ A+++L +AL G ++L I D+ T Sbjct: 419 ENCALERREEGIIYLQLAPSMANLHSKRAEERLQQALEEYYGEAIQLIIRIADSTLGTDT 478 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 R+ A ESI D NI+ L F+A L +S+RP+ Sbjct: 479 VASRRKQEDATWQQAAVESIQNDANIKALSETFNARLPLDSVRPL 523 >UniRef50_D2RCW6 DNA polymerase III, subunit gamma and tau n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCW6_GARVA Length = 801 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 155/626 (24%), Positives = 273/626 (43%), Gaps = 46/626 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L+ L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFDGVIGQDQVTIPLSRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NCE G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCEKGPTSHPCGECQSCKDLATGGAGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I +E I +P L+L+ RA GS+RD LS+ DQ + DG +S + Sbjct: 180 PPEVMSPYLEDICKKEGILPQPGVLRLVMRAGAGSMRDTLSVLDQLMVGAVDGSISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + ++ ++ +G + ++ G + + ++LG + + ++ Sbjct: 240 VALLGFTPNSLISEFIDDLINHDGASIYDVVRRVIVGGYDTRKFVEDLLGRVRDLLLMVS 299 Query: 298 SPAA-----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + L + + + + ++ D+ QT+ + A RM +E+ Sbjct: 300 AGPKAASSLLNDVSPEDLEILNKQSASMTLHDLARMAQTINDALSAMASAISPRMNLEIL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + ++ VA + Q S V Sbjct: 360 ------------VARLLADSETSNTVATNLRINNVQQQNISTSTQNIQNKVSSGAHFVGS 407 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 + ++ + S + T A P+ A + + + + + A +K Sbjct: 408 TSNKKYVSADSENNSTSNSSLPSETTASPIAKAETQSATNTKETESKKVFLNDAHNANSK 467 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 ++ A M K V P +++ + E P + A +R Sbjct: 468 NDSMDTDA----MWDKVVSKLPDDVREYVTREYVPTVQLTSAQSGRQR------------ 511 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + N + A+ + S + + + + + G+ V + Sbjct: 512 ----LILTFNEPMSQHAFALAVCTTSPYD---GQKVPKVVMNEVHEIFGTQVMIAPAPVA 564 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESI 618 + +E + +KLA+ + I Sbjct: 565 ANGEQ--VESVARMDPQKLAKVKRDI 588 >UniRef50_Q0BVJ3 DNA polymerase III subunit gamma/tau n=8 Tax=Alphaproteobacteria RepID=Q0BVJ3_GRABC Length = 686 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 176/566 (31%), Positives = 267/566 (47%), Gaps = 11/566 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLAR++RP+ F D++GQ+ ++ L N +L R+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 48 YRVLARQYRPRHFDDLIGQDALVRTLRNAFALNRVAHAFMLTGVRGVGKTTTARIIARAL 107 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 108 NCTGADGQGGPTADPCGVCPNCTAILADRHPDVVEMDAASRTGVDDVREIIEATRFRPLQ 167 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R KV++IDEVHMLSR++FNALLKTLEEPP HV F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 168 ARTKVFIIDEVHMLSRNAFNALLKTLEEPPPHVTFIFATTELRKVPVTVLSRCQRFDLRR 227 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 +D E + IL +E ++ P+AL L+ARAA+GS+RD LSL DQAIA D +S Sbjct: 228 IDAEVLSAHFSRILEQEGVSASPQALALIARAADGSVRDGLSLLDQAIAQNDPGIPISEA 287 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V+ MLG D L L+EA++ + +A+ + A ARG + +L ++L L+H + + Sbjct: 288 QVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHTLTRL 347 Query: 296 QLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P A R+R LA + + +Q LL G E+ APDRR EM L Sbjct: 348 KTIPHLRTAPGMAEAERLRGSALADRLAMPVLGRAWQMLLKGIAEVEAAPDRRAAAEMVL 407 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ-- 411 +R P E V P S+ A + Sbjct: 408 IRLCYVADLPPPAELVRRLTGAPGTQQPGHQGGGGVAPSTPSSSPTASSTGFRAIAGGIM 467 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + R A + A L + Sbjct: 468 SGGSGAATARQPHAMADSVPDVPVPVFHSFREVAQFVESRREAMLHAHLLHNVHLVRFAP 527 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 R ++ P ++ A + R ++++Q S Sbjct: 528 PVIELRLESNVPHTLPAQLAALLGEANGQRWTIALSSAPGEPTLAEQGRAAGESRLAQAS 587 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLR 557 +V + + + Sbjct: 588 NHPVVRAILNAFPGARLGTVIDSTVD 613 Score = 47.7 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 39/374 (10%), Positives = 88/374 (23%), Gaps = 19/374 (5%) Query: 271 AAARGIEWEALLVEMLGL-----LHR-IAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 G+ + ++ + ++++ + A + E ++ ++ Sbjct: 241 LEQEGVSASPQALALIARAADGSVRDGLSLLDQAIAQNDPGIPISEAQVADMLGLADRGM 300 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVM 384 + + L+ G A L + + + + Sbjct: 301 VLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHTLTRLKTIPHLRTAPGMA 360 Query: 385 TPTQVPPQPQSAPQQAPTVPLP-ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 ++ + P + + + +A + + A + P Sbjct: 361 EAERLRGSALADRLAMPVLGRAWQMLLKGIAEVEAAPDRRAAAEMVLIRLCYVADLPPPA 420 Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH 503 + + + + + + A H Sbjct: 421 ELVRRLTGAPGTQQPGHQGGGGVAPSTPSSSPTASSTGFRAIAGGIMSGGSGAATARQPH 480 Query: 504 EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRH 562 + A V L + N + + L L S+ H Sbjct: 481 AMADSVPDVPVPVFHSFREVAQFVESRREAMLHAHLLHNVHLVRFAPPVIELRLESNVPH 540 Query: 563 LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 +LA L G TI P T E +A E +LAQA Sbjct: 541 TL----PAQLAALLGEANGQ--RWTIALSSAPGEPTLAEQGRAAGESRLAQAS----NHP 590 Query: 623 NIQTLRRFF-DAEL 635 ++ + F A L Sbjct: 591 VVRAILNAFPGARL 604 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 136/430 (31%), Positives = 208/430 (48%), Gaps = 3/430 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP+TF DVVGQEH+ L N ++ G+ HAYLF+G+RG GKT+ ++++AK + Sbjct: 2 YQALYRKWRPKTFDDVVGQEHITATLKNEVAAGKFSHAYLFTGSRGTGKTTCSKIVAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C CR I+ G +D++EIDAAS V++ R L + + P+ +++V Sbjct: 62 NCERPVDGNPCNECAACRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPSVVKYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HMLS+ + NALLK LEEPPEHV F+LATT+ K+ TILSRC +F + Sbjct: 122 YILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRCQRFDFHRIRSRV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L +I +E + A L+AR ++G +RDALSL D + G ++ QAV+ G Sbjct: 182 IADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASFGTD-ITVQAVTQAAG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +A + + + ++ + + ++ L +M+G + +V+ A Sbjct: 241 LAGQSHLFEIADAAIARDPAAALLVVGRLSEQSCDFSRLCEQMIGHYRNLMIVKTVREAD 300 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+R A I I L L +R +EM ++R Sbjct: 301 DLVQGTPEDLERLRTQAGGISLGAIMYALGVLQDAATSLTRTAFKRTELEMAIVRLCDER 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + A PP A A P AA + + Sbjct: 361 MGGGLEGVLDRLEKLEKAARLGAAQAPAAPPAQPEASGAATAPPKDSAKPVSAAAASKPK 420 Query: 421 RVQGATKAKK 430 G + Sbjct: 421 PAAGVAQVTP 430 >UniRef50_D2PUL3 DNA polymerase III, subunits gamma and tau n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUL3_9ACTO Length = 1113 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 226/529 (42%), Gaps = 10/529 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 L R++RP+TFA+V+GQ+HV L N LS R++HAYLFSG RG GKT+ AR+LA+ +N Sbjct: 15 LALYRRYRPETFAEVIGQDHVTAPLRNALSNNRVNHAYLFSGPRGCGKTTSARILARAIN 74 Query: 64 CETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 CE G A PCGVC +C ++ +G +D+IEIDAAS V+D RDL + +AP R+K Sbjct: 75 CEKGPIAQPCGVCKSCTDLARGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVESRYK 134 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDE HM++ FNALLK +EEPP H+KF+ ATT+P K+ TI SR + + + + Sbjct: 135 IYIIDEAHMVTTQGFNALLKLVEEPPPHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPK 194 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 + + + E +A P AL L+ RA GS+RD+LS+ DQ I + V+ + A+ Sbjct: 195 VLGDYMATLCEAEGVAIAPAALPLVVRAGAGSVRDSLSVLDQLIGGAGPEGVTYELAVAL 254 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + V+ + V + + G + + ++L L + ++ P Sbjct: 255 LGFTPDSLLDACVDGFAAHDSRAVFETVEKVIETGQDPKRFAEDLLRRLRDLVILSAVPN 314 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L R++ A I P ++ + G E+ A R+ +E+ + Sbjct: 315 AVASGLIEAAEDQGERLQTQAAGIGPAELTRAADIVAAGLLEMRGATAPRLQLELICAKV 374 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + V P+ A + P T +A Sbjct: 375 LLPGADDSTNGIQARLDRMERRLTIGVP---AGTPEVAPAARVMPATDGAAGTPAGGSAG 431 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 G + A + + + SA + A Sbjct: 432 GSSAGGVGGSAGAAVAGGAGSAGAVGGVGSAGGVGGAAGASGGGTGGSAGDAGAAAGSTG 491 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 +T + V + E W Sbjct: 492 GAAGSTNGGRAASVASARAGAGGRAESGAAGGAVNPPVGGDNRSGAWPD 540 >UniRef50_C3J7N6 DNA polymerase III, subunit gamma and tau n=2 Tax=Bacteria RepID=C3J7N6_9PORP Length = 594 Score = 317 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 172/624 (27%), Positives = 267/624 (42%), Gaps = 40/624 (6%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RP +F ++GQE V L + + HAYLF G RGVGKTS AR+ Sbjct: 1 MSEKFVVSARKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIF 60 Query: 59 AKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NC + + CG CD+CR + R ++ E+DAAS D R L++ V P Sbjct: 61 ARAINCASPLASGEACGECDSCRAFAEQRSFNVFEMDAASNNSANDIRQLIEEVNIPPQV 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+Y+IDEVHMLS +FNA LKTLEEPPE+V F++ATT+ QK+ TILSRC F K Sbjct: 121 GRYKIYIIDEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQVFDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I QL HI E I E +AL+L+AR A+G +RDALS+ D+ + DG+VS Sbjct: 181 IPSDVIIGQLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYTDGEVSYSRT 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 L LDDD V+ +V + + L++E RG + +++ + L + + Sbjct: 241 LESLNILDDDYYFRFVDLLVHNDYASTLLLLDELIMRGFDPRTIVLGLTDFLRNLLLAFD 300 Query: 298 SPAALGNDMAAIELR-MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + +LA+ + L+ KE + +R+ VEMTLL Sbjct: 301 PQTLPLLHLTKETEASYNQLAQASGRGFLYQAIAKLMECLKEYRNSNAKRLLVEMTLLSL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + + T PT P + A P P Sbjct: 361 TSLAQERV------------SASHTPNQRPTPAATPPSAPSPVAAPRPQPIAAPAPARPS 408 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + + + P + A R + R P P+A A K Sbjct: 409 APPTPRQTGASTEAPQSIDLPKPPPTASMAAPRPVAPAPRPAVAPSPTATSAAAPKAPTQ 468 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 ++ T ++ A L L + + + + ++ Sbjct: 469 EKRSFTET-----------EMQIAWNAYAEEHLQKNLFLKNAFNEVLPKLHNGTEIEAIM 517 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 + E ++ +LRS+ + + +++ TI E+ + Sbjct: 518 FNMLQVNAVERIKGSLLSYLRSALHNSDITLQVRQIE-------------TIEEERSQRS 564 Query: 597 RTPLEWRQAIYEEKLAQARESIIA 620 TPLE +++ E + I A Sbjct: 565 ITPLELFRSLAAEPQTPLHQFIQA 588 >UniRef50_C0GUE6 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUE6_9DELT Length = 561 Score = 317 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 141/441 (31%), Positives = 222/441 (50%), Gaps = 3/441 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L ++RPQ FA V GQ+ + + L+ R HAYLFSGTRGVGKT++AR+L+K Sbjct: 1 MAKAGLTARYRPQNFAQVAGQDFIKSILSRAAGQDRPSHAYLFSGTRGVGKTTLARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC G PC C +C +I +G D+ EIDAAS T V++ R L ++V Y+P GR+ Sbjct: 61 AINCYNGPAPEPCNQCSSCEQITRGASPDVWEIDAASHTGVDNVRKLREDVAYSPMSGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS +FNALLKTLEEPP H F++ATT P+K P T++SRC + K L Sbjct: 121 KVVIIDEAHMLSTSAFNALLKTLEEPPAHCVFIMATTAPEKFPATVISRCQHYVFKRLTH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++ L +L+ E +++E A+ LL R GS+RD++S+ Q +A GD + T V + Sbjct: 181 GELFAHLCFVLDTEGVSYEKEAVHLLTRRGSGSVRDSMSMLGQVLALGDEGLKTADVRRV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D + L L++ +++ + R+ ++N +G++ L EM + ++ Sbjct: 241 LGLADQELFLRLMQHILDQDLVRLHEMVNYLLEQGLDLGFFLQEMAQCWRNMFLLSQGGQ 300 Query: 301 A---LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + A + RE+A + I +Q +L RK + + + + +E+ L Sbjct: 301 EAGKVLDLPAEEVEKWREMAGMFAASTIHAGWQMVLESRKSILGSYEPGISLELMLYNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +P+ Q + +S + T P V Q Sbjct: 361 YLPELIPVSGYAPEPQPRGETRQNTAEKKYPAGGEKKSLNNEYKTSSSPGEPEVVTENFQ 420 Query: 418 QLQRVQGATKAKKSEPAAATR 438 + Q + E T Sbjct: 421 EFQDRGEDKAEVQEEKPPGTE 441 >UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ85_9FIRM Length = 525 Score = 317 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 151/520 (29%), Positives = 236/520 (45%), Gaps = 10/520 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R+WRPQ FAD+VGQ+HV L N L R+ HAYLF G RG GKTS A++LAK + Sbjct: 2 YQALYRQWRPQFFADMVGQQHVARTLQNALEQDRLAHAYLFCGPRGTGKTSAAKILAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE G + PC C CR I+ GR +D+ EIDAAS +++ R+L + +Y+P R KV Sbjct: 62 NCEKGPSREPCNECAACRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPVEVRHKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHML++ +FNALLKTLEEPP V F+LATT+P KLP TI+SRC + + + Sbjct: 122 YIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQRLDFHLIGMTD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++++ + + AL L+A A G LRDALSL +Q +A +G +S + V A+LG Sbjct: 182 IAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSEGNISDEDVLAVLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA- 301 + D ++++ + + L+ E AA G + + + + + Sbjct: 242 AVGRDVYYRFTDSLLRRDLAAALLLLQEVAAGGKDLHHFTRQAISYYRDLMVALTCGDDA 301 Query: 302 -LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R+ + AR + I L E+ +A R+ E+ + R +A Sbjct: 302 VALGIAPDWAGRLHKQARQLGMGTIGHILSELHGLLNEVRWASRPRLLWELAIFRIMAPQ 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 RQ PV+ A + P P ++ Q + A + Sbjct: 362 --------AEDRQQELPVSKPADVKPDNTPVVKETPAQNSFPEQKRAAEPAGETASIENL 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + + + +Q A+ K Sbjct: 414 PRLWPRVLELVRKESVKTHALLLSGEVSSCDEKVLELQFSGPFHCEMMESAENRRSLQKV 473 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER 520 V + + +L+ ++ E + Sbjct: 474 LKKVFAVEPAIRCVVGKNGSLQQQQPEEKDPAELISSAVE 513 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 40/455 (8%), Positives = 103/455 (22%), Gaps = 47/455 (10%) Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 E R L+ AR + +R + + D+ A+ L L Sbjct: 102 EIRELREKARYSPVEVRHKVYIVDEVHMLTQEAF--NALLKTLEEPPGRVLFVLATTEPH 159 Query: 259 ANGERVMALINEAAARGIEWEAL-LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 +++ ++ + + ++ L + + + + E A Sbjct: 160 KLPATIISRCQRL-----DFHLIGMTDIAERLRSV-----VDDSGRSIQDDALYLIAEEA 209 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAP 377 ++ L + + + R + Sbjct: 210 A----GGLRDALSLLEQIMAYSEGNISDEDVLAVLGAVGRDVYYRFTDSLLRRDLAAALL 265 Query: 378 VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE----- 432 + + + A + + T A G + + Sbjct: 266 LLQEVAAGGKDLHHFTRQAISYYRDLMVALTCGDDAVALGIAPDWAGRLHKQARQLGMGT 325 Query: 433 --PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEV 490 + +N + + + + + ++ A V Sbjct: 326 IGHILSELHGLLNEVRWASRPRLLWELAIFRIMAPQAEDRQQELPVSKPADVKPDNTPVV 385 Query: 491 VATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP--KLVEQVALNAWKEES 548 TP + E A + A+ W + + K + Sbjct: 386 KETPAQNSFPEQKRAA-EPAGETASIENLPRLWPRVLELVRKESVKTHALLLSGEVSSCD 444 Query: 549 DNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAI 606 + + L + + ++ L + L + + V N +++ Sbjct: 445 EKVLELQFSGPFHCEMMESAENRRSLQKVLKKVFAVEPAIRCVVGKNGSLQ--------- 495 Query: 607 YEEKLAQARESIIADN--NIQTLRRFFDAELDEES 639 Q D I + F + +ES Sbjct: 496 ----QQQPE---EKDPAELISSAVEIFGGRVIDES 523 >UniRef50_Q022F8 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022F8_SOLUE Length = 568 Score = 317 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 244/471 (51%), Gaps = 2/471 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQV+ARK+RPQ+FADV+ QEHV T L N ++ RI H Y+FSG RG GKT+IAR+LA+ L Sbjct: 2 YQVIARKYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCL 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC G TATPCGVC +C+EI +G VD+IEIDAAS + + R+L +NV+Y PAR R+K+ Sbjct: 62 NCVQGPTATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYKI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE H ++ +FNALLKT+EEPPE F+L TT+ K+P TI SRC F +++D ++ Sbjct: 122 FIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQE 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + ++ I +E I + AL +LA A EGS+RD+LS DQAIA +++ V A+LG Sbjct: 182 LVDRMSWICGQEGIEADAEALAVLAAAGEGSVRDSLSALDQAIACCGAKITAPEVRALLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + EA+ ++ +++E G + E+ + + +++ A Sbjct: 242 AFSLESLEKVTEALAAGESRMMLEVVDELERNGQNLQHFSRELSRYFRNLLVTRIAGADT 301 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AA ++ +A D+ Y Q L ++L ++ R +E+ L+R + Sbjct: 302 RLVAASAAQREKLGHIAGQFSEEDLSRYLQLSLDIFRDLQFSLQPRFHLEIGLVRLVQAG 361 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P+ E + P A + P + +P + L ++ Sbjct: 362 RLLPIEEALAGLTAAPPAPRAAQIPQAPPPRAAAPPQRPPAPLPRVGPSPFELDRIKKGI 421 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + + A A ++ + + + + A Sbjct: 422 GPSEPQSSGANALAPEPAAPAMSAGDPRQKLHAWFHEKGNAHLADAVENAA 472 >UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKL9_9BACT Length = 534 Score = 316 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 137/416 (32%), Positives = 215/416 (51%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARK RPQ F ++ GQE V+T L N + +GR+ HAYLF+G RGVGKTS AR+LAK Sbjct: 1 MSYIALARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTSAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + + PC C+NC EI G +D++EID AS +++ R+L + V++ P + +F Sbjct: 61 AVNCLEPVGSNPCNKCENCTEITSGTSMDVVEIDGASNRGIDEIRELREAVRFLPVKCKF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ H+FNALLKTLEEPP++V F+LATTDPQ+LP TI+SRC ++ + Sbjct: 121 KVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRCQKYDFNKIPF 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L ++ E I ++ AL L+ R ++G +RD+LSL DQ IA G++ Q+ S + Sbjct: 181 EIMYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLLDQIIAFTGGKLDEQSTSFL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L +++ E + I E + +G+ + ++G + M ++ Sbjct: 241 LGFSEKSLVDKLFALIIKEQPEEIPDAIEELSGKGVNFAFATETLIGHTRNLLMQLITKK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +EL + + +Q +L + + E + +A Sbjct: 301 ENKELTSKENDYYKELVKNTSEQQLYALFQVFQKLLNDLKFFSFEQYIFEFGMYKAANIG 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + S V P + + + + Sbjct: 361 SVISSKGLASQTSSDTTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIPG 416 Score = 61.6 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 4/156 (2%) Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK 545 + T + L++ +E + V Q L + Sbjct: 369 ASQTSSDTTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIPGSLSSMLGHGYIV 428 Query: 546 EESDNAVCLHLRSSQRHLNNRGAQQKLAEALS----MLKGSTVELTIVEDDNPAVRTPLE 601 +D + + S ++ + + + +AL+ S ++ V + + ++ +E Sbjct: 429 HIADKVLTIGFSSEKKFYFDFVNRAQNMQALNRIIPAAFNSIDQVKTVIEQDTKKKSIVE 488 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 +Q I + R+ D +Q + R FD +L++ Sbjct: 489 KKQTIETFHEKKIRQEAKEDGLVQKIIREFDGKLED 524 >UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJ36_9DELT Length = 747 Score = 316 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 169/583 (28%), Positives = 257/583 (44%), Gaps = 8/583 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y LARK+RPQ FAD++GQEHV L N + R+HHAYLF G RG+GKT+ AR+LAK Sbjct: 1 MAYLALARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTTAARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T PC C +C I +GR VD+IEID AS V+D R L D V Y P R Sbjct: 61 CLVCEHGPTPEPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYLPQIARR 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FNALLKTLEEPP HV FL ATTDP K+ TILSR + + + Sbjct: 121 KIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYRRVRA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVS 238 + L+ IL +E A EP L ++AR +GS+RD+L+L D+ IA ++ + V Sbjct: 181 ATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFAHDPKAITGEEVL 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LG LV+A+++ + V+ + + G + L V +L L + ++ L+ Sbjct: 241 TVLGQASRYAVAELVQAILDRDAASVLQRFEQITSSGSDLMQLAVAILQHLRDLTVLSLT 300 Query: 299 P--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AAL + + +++ A PT + ++ + ++ R+ +EM LL Sbjct: 301 KSRAALLDMNDDLFEQLQRQAGATSPTVVAQHFDRFARVVDSIEHSRVPRLVIEMGLLEL 360 Query: 357 LAFHPRMPLPEPEVPRQSF-APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 ++ P MPL + + + S P A Sbjct: 361 VSAEPLMPLGDLVTRLDALSKGRPTPRGGGGGGGGGRRGSGGGGGGRPRGPAPRQAAPAQ 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 ++ A+ A P A PV + + + + + E Sbjct: 421 AAPMRAGPPASAAPMPAPTPAPNPSPVVHRPPAQTQAPKRATAPAGGGGSGNASADMLER 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ---LSL 532 +A + + A A + + +A + A + Q Sbjct: 481 MAREAGLLGGKPEPAQARTPQRNAAPQRSAAAQRSAPPQSNAAPQRNAPPQYQDGPPPRD 540 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEA 575 A N + L + + + A Sbjct: 541 EPPWPVPAANDPRSPQGQGFALTNDRLRPVEPSSEVAKDPQAA 583 Score = 63.9 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/292 (10%), Positives = 73/292 (25%), Gaps = 16/292 (5%) Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + P + + A + + P T + A + Sbjct: 448 VHRPPAQTQAPKRATAPAGGGGSGNASADMLERMAREAGLLGGKPEPAQARTPQRNAAPQ 507 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + A + P + + P + + Sbjct: 508 RSAAAQRSAPPQSNAAPQRNAPPQYQDGPPPRDEPPWPVPAANDPRSPQGQGFALTNDRL 567 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R + + + A P + E + +L + D W +S++ + Sbjct: 568 RPVEPSSEVAKDPQAACPSSRCTPREPIQWRQLGS--------WDAWETFLSRVRQENDL 619 Query: 537 EQVALNAW--KEESDNAVCLHLRSS----QRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 L+ ++ V L ++ + N + + G + L +V+ Sbjct: 620 LSAVLDNLGLLSLTEGHVELAAPANGFARTQLRENPEIEAAFEALAAAYFGENMHLELVD 679 Query: 591 DDNPAVRTPLEW--RQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 P + + Q + I+ L F E+++ I Sbjct: 680 IVPSLPDAPSMLLVYKERQRKHREQIEHDAHSHPRIRALLHAFGGEVEKVDI 731 >UniRef50_C8PCQ5 DNA polymerase III n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PCQ5_9LACO Length = 605 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 151/591 (25%), Positives = 270/591 (45%), Gaps = 17/591 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R+WRP+TF VVGQ + L N + +I HA+LFSG RG GKTS A++ AK Sbjct: 23 MAYQALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAK 82 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC ++G D+IEIDAAS V++ R + D V+YAP +G + Sbjct: 83 AINCMDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYY 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPPEHV F+LATT+ QK+P TI+SR +++ K + Sbjct: 143 KVYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISN 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ +++ IL++E IA++ ++LQ++A+ A+G +RD+LS+ DQ ++ +++ Q A+ Sbjct: 203 DQLVARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAI 262 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G D + +L ++ + + + E G + +L E++ L+ + + Sbjct: 263 TGYADQVKIEALFLDLLNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDT 322 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + A ++R I + Q L Y +++ +++ ++R Sbjct: 323 TVTFLSANYLEQLR----LISTQVLSQTLQLANEALNSLRYTNQQQIPLKVFVVRI---- 374 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + T + + + S++L + Sbjct: 375 ---STQDVNATVSQTDAAEIKQLQTKVEQLSLQVAELLKKANSSAIAKPSEILTEIKDKV 431 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 R A + ++ A + + + + ++ + + + Sbjct: 432 RPTKAVNQNVATLKKKKTGLQLSTEANLKKVNAVLSQATKQDLNTIKDVWQQDMSSLLEV 491 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + + + L+ + +A E + +L+ K + Sbjct: 492 SQRALLEVLEPVAASPTQVVLKCKYEFWFERAMADENFISQL-ENNLEKLTQHKYQIVLV 550 Query: 541 -LNAWKEESDNAV---CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 N+W V HL +Q+ L + ++ + +A L G V + Sbjct: 551 SENSWTTIRQEYVKKYKEHLIIAQKELASNPNEEVIKKA-KSLFGDLVNVK 600 >UniRef50_A8SL11 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SL11_9FIRM Length = 540 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 202/363 (55%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + R++RP+ F VVGQ H++ L N + G + HAYLFSG RG GKTS A++ A+ +N Sbjct: 5 QAIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C I PC C+NC+ I + + ++++E+DAAS +++D R+L + V Y P ++KVY Sbjct: 65 CLNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK LEEPP+H+ F+LATT+ KLP TI+SRC +F K ++ I Sbjct: 125 IIDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 + ++LN ++ E + L++ + G++RDALSL DQ +A+G +++ + ++ LG Sbjct: 185 VENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGL 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + L ++++ ++ + G ++++++ I +V+ L Sbjct: 245 VNLNMLFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFRNIILVKSIKKELT 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R E + ++ + LL ++ + + E+ +++ +F + Sbjct: 305 TLNDVEYKRYLEHSNKFEMDELIFILENLLDVEDKMKKSDMQNALAELLIIKICSFKRKK 364 Query: 364 PLP 366 Sbjct: 365 SEM 367 >UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 Tax=Legionella RepID=Q5X1E1_LEGPA Length = 556 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 225/558 (40%), Positives = 306/558 (54%), Gaps = 11/558 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY LARKWRP+TF+ +VGQEH+ AL N L+ R+HHAYLF+GTRGVGKTS+AR+LAK Sbjct: 1 MSYLALARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFTGTRGVGKTSVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GIT+ PC CD C IEQGR++DLIEID AS+T+VEDTRDLLDN+QYAP GRF Sbjct: 61 ALNCEKGITSEPCLHCDTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLKTLEEPP HVKF+LATTDPQKLPVT+LSRCLQF+LK L Sbjct: 121 KIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQFNLKHLPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I QL+ IL EE + E +AL +LA+AA GS+RDALSL DQAI S + ++ V + Sbjct: 181 ELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETKLLASDVKIL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D AL L++A+ + ++ L + A G ++ +L EML LH+I + Q Sbjct: 241 LGHTQQDYALLLLQALAKQEAPTMLVLSQQIIAEGGNFQYVLDEMLNYLHQITIYQCLGD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ELA+ D QL+YQ + GR+E+ AP +G MT+LR F Sbjct: 301 NNPLISP--KAEIKELAKQFSAEDTQLFYQIGIKGREEMHLAPTLAIGFNMTMLRMYTFK 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + P + + + T P P +P+ + T ++A Q Sbjct: 359 PASHVTTPPLAFEQNNKTCSLIIDDNT-----PAQNPIGIEPIPVTKATGNIVAYHQTQS 413 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 K+ S + + ++ A + + + Sbjct: 414 LSTDDKKSANSGESMNCDWNDIIPQLKLSGLALNAIENAEFLGKKEREITLGVQKGHQSL 473 Query: 481 TTPVMQQKEVVATP----KALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 TP + A +K L + + E ++ + L + Sbjct: 474 FTPTTINRIETALAGYYKSPVKITLNSQDAVHASPAQQKEKATQEKQEQAEAALHADPVF 533 Query: 537 EQVALNAWKEESDNAVCL 554 +Q+ E N++ L Sbjct: 534 QQLKQEFSAELVKNSIVL 551 Score = 89.7 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 129/476 (27%), Gaps = 31/476 (6%) Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + E+ + + ++ RD L A +G ++ ML + Sbjct: 80 VAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYAPTNGRFKIYLIDEVHMLSQHSFNAL 139 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L +E V ++ + + L + L + ++ Sbjct: 140 LKTLEE----PPSHVKFILATTDPQKLPVTVLSRCLQFNLKHLPAELINQQLQLILQEER 195 Query: 310 ELR------MRELARTIPPTDIQLYY-QTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + A D Q + +L A D ++ + T + Sbjct: 196 LDFEIQALDILAQAARGSMRDALSLLDQAITSCETKL-LASDVKILLGHTQQDYALLLLQ 254 Query: 363 MPLPEPEVPRQSFAPVAPTAVMT-----------------PTQVPPQPQSAPQQAPTVPL 405 + + + +A L Sbjct: 255 ALAKQEAPTMLVLSQQIIAEGGNFQYVLDEMLNYLHQITIYQCLGDNNPLISPKAEIKEL 314 Query: 406 PETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSA 465 + S ++G + + A + + AS + Sbjct: 315 AKQFSAEDTQLFYQIGIKGREEMHLAPTLAIGFNMTMLRMYTFKPASHVTTPPLAFEQNN 374 Query: 466 LEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAA 525 + + + + AT + + + + W Sbjct: 375 KTCSLIIDDNTPAQNPIGIEPIPVTKATGNIVAYHQTQSLSTDDKKSANSGESMNCDWND 434 Query: 526 QVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + QL L L NA + + + + L ++ + L ++ AL+ S V Sbjct: 435 IIPQLKLSGLALNAIENAEFLGKKEREITLGVQKGHQSLFTPTTINRIETALAGYYKSPV 494 Query: 585 ELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 640 ++T+ + +P + ++ +EK QA ++ AD Q L++ F AEL + SI Sbjct: 495 KITLN-SQDAVHASPAQQKEKATQEKQEQAEAALHADPVFQQLKQEFSAELVKNSI 549 >UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bacillus cereus group RepID=B7IZ38_BACC2 Length = 548 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 143/408 (35%), Positives = 217/408 (53%), Gaps = 9/408 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+RP F++++GQ H+ + N L L + HAY+F+G RG GKT+IA+L+A L Sbjct: 2 YQALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSL 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NCE+ PC C C+ I D++EIDAAS VE R++ + V YAP G++K Sbjct: 62 NCESLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLKTLEEPP+HV F+LATTD K+P TI+SRC +F + + Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGPR 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 I +L H+ +E + E ALQLL A+G +RDALSL DQ IA + ++ VS + Sbjct: 182 DIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSEV 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +G + ++ + + +++ N ++ LIN+ G E LL +++G L + + + Sbjct: 242 VGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFEV 301 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 N AI + EL +Q+ + L + E+ ++ + ++ +E+ Sbjct: 302 KEDNITTAILNSKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEV------GL 355 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + E V T P +PTV P Sbjct: 356 IQLATEAQEENRLIKKINELEKRVRELTSSGSVPVRPKSFSPTVQQPA 403 >UniRef50_B1C8Q2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8Q2_9FIRM Length = 645 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 198/361 (54%), Gaps = 4/361 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL R++RP+ F +++GQ++++ L N + I HAYLFSG RG GKTS A++ AK Sbjct: 1 MSYTVLYREFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C C C +C +I G D++EIDAAS +++ RDL + V Y P GR+ Sbjct: 61 SICCLNNKEGEACNECASCNDINIGDGADIVEIDAASNRGIDEIRDLKEKVNYMPNFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKTLEEPP H+ F+ ATT+P K+ TILSRC +F +D Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSRCQRFDFNRIDS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 E + + L IL+++ I +E AL+L+A EG+LRDALSL D+AI+ D +++ + Sbjct: 181 EVVVNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAISVVKDNKITKETADD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + D++ L + ++E + ++ + +++ +G E +++ +++ + Sbjct: 241 ILGLISDEEIFLLAKGILENDVDKSLNAVHDFLNKGREVGSIITQLMEYYSNKIIAVNVK 300 Query: 300 AALGNDM---AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 I I +L + ++ + + ++ Sbjct: 301 EPEKIINKSSTYISSLKESFNGLEDSKRISDILYSLAKLKNDMRFFSEPEFLFTAKIINL 360 Query: 357 L 357 Sbjct: 361 C 361 >UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau subunits n=2 Tax=Alteromonadales RepID=Q3IKN4_PSEHT Length = 842 Score = 315 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 248/529 (46%), Positives = 327/529 (61%), Gaps = 10/529 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQTF ++VGQ HV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+A PCG C +C++IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCDEGISANPCGQCSSCKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ QLEH+L E + + AL+++A+AA+GS+RDALSLTDQAIA +G ++ QAV M Sbjct: 181 SEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + SL+ A++ +G +M + A+R + ALL +++ L H + QL P Sbjct: 241 LGLMDTHYSQSLLAALLAQDGAALMKEVANVASRNPNYVALLDDLIALTHLTQLSQLVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A D + +A+ P IQ+YYQ LL G+K+L +AP+ R+G EM +LR LAF Sbjct: 301 AAALD-ETNADYITHVAQNTNPQQIQIYYQLLLNGKKDLQWAPEPRLGFEMIMLRLLAFQ 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P QS PVA + + PLP T + Q+ Sbjct: 360 PIDT--------QSQQPVAVNTQPVQSNTTKASALRDILNKSKPLPSTAQNNDTTQPQII 411 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A AK SEP NN++ + S T + V + A EA + Sbjct: 412 EPKPADVAKLSEPQNVAPDPLNNNSSTTQHVSTTVPAVEQAVEPTIVSAV-PNEAASEQL 470 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 T Q V +A +++ + + + + A D ++ V Q Sbjct: 471 VTQQHQHTNDVTDEQAQRQSEDEAYLQQSNLEHSLAAQFDDVISSAVDQ 519 Score = 98.5 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 102/279 (36%), Gaps = 1/279 (0%) Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQG 424 L + Q +A P++ ++ +Q T Q Sbjct: 565 LSNAKETEQQNTANLSSANTRPSRFTANSSNSNEQNVTTNSDAINHSRANNNAQQTHADN 624 Query: 425 ATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPV 484 + + + A + A+ + +++P KA + Sbjct: 625 PPPWPNDFAGESEKKPQLPLAGSQNKAASQAQFESKPERKIDFKAKHQTITENLAPELLE 684 Query: 485 MQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAW 544 + V + ++ + A ++D WA + ++ L + Q AL++ Sbjct: 685 QINPQKVPEVVVAQPSIPAPDDFQSPISEIRFAHQQDEWAYLIKRMGLGGRMRQFALHSI 744 Query: 545 KEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQ 604 + N + + + SQ+HL+ +Q+L ALS + V L+I + +P +Q Sbjct: 745 FTKQGNNLHIDVDESQKHLDTPMLRQRLDAALSSIYEHNVTLSINF-AKGVIDSPYLIQQ 803 Query: 605 AIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 I + QA + I +D+NI ++ F AE+DE SI+ + Sbjct: 804 KIDAGRHQQAIDVITSDDNIVQFQQLFSAEIDENSIQAL 842 >UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8I9_9BACT Length = 648 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 161/622 (25%), Positives = 256/622 (41%), Gaps = 8/622 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RPQ+F+DVVGQ + + LS GRI HAYLFSG RG GKT++ARLLAK + Sbjct: 2 YQSLYRRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC A PCG C +C I GR +D++EID AS V++ R+L NV A G +KV Sbjct: 62 NCTARNGAEPCGQCQSCLAIRDGRSLDVVEIDGASNNTVDEVRELKANVGLASFGGNWKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT+P K+P TI SRC L V Sbjct: 122 YIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQHIPFHGLSVPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I QL+ + E ++ E AL +AR+++G +RD LSL +Q IA G G V+ AVS + G Sbjct: 182 IVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIALGGGSVTKAAVSQLTG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ S + ++ + R ++++++ G E L+ + + + ++ A Sbjct: 242 GGSTEEIQSWL-SLCRTDPARSVSVLSDMFLSGALPERLVSNVFSSVRNLWLLVRWGQAG 300 Query: 303 G---NDMAAIELRMRE--LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 E + A ++ + L ++ + + + A+ Sbjct: 301 LAGTAFSEDEEGWLLREGEAARGHSGSLESFLVRLAALTPQIRRGMGSSVVAGLVSMWAV 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 E P + A +P P + P + A Sbjct: 361 DALSGKEPAVAEPPVMKPSIPANRVFSSPAPAAPAQDGGKTGVSSEREPSASRAPEPALT 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + ++ A + + AS ++ P E ++ Sbjct: 421 VDLPPRETENEPQNAQPFQEEAEQPASVEEKVNASSPVSLEEDPGRM-AEAVDELRKFPA 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 + ++ + + +A + + + + V Sbjct: 480 AEDPVLWTVVHLASFAGGEGGVTVDLDGSQTIAWEAMNDRRMAALRGRLKAHFPDLENVT 539 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVR 597 ++ S + ++ EA S + + Sbjct: 540 VRFCGQTRDCSGLTELEDAEKMISRMAGAKEEKADQEAESAEGSEPAKAGLQISPVEVEP 599 Query: 598 TPLEWRQAIYEEKL-AQARESI 618 P E A E+K+ AQA + Sbjct: 600 VPAEPAGAAQEKKVGAQAESVL 621 >UniRef50_C7H4D6 DNA polymerase III, gamma/tau subunit n=3 Tax=Ruminococcaceae RepID=C7H4D6_9FIRM Length = 625 Score = 315 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 156/589 (26%), Positives = 258/589 (43%), Gaps = 16/589 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L RKWRPQ F DVV Q ++TAL N ++ GR+ HAYLF+G RG GKT+ A++ AK + Sbjct: 9 YRALYRKWRPQRFEDVVAQRGIVTALRNQIATGRVGHAYLFTGVRGTGKTTCAKIFAKAV 68 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC PCG C+ CR I+ G +D++E+DAAS V+D RDL D Y P+ +KV Sbjct: 69 NCLHPQNGDPCGECEICRGIDNGSILDVVEMDAASNNGVDDIRDLRDETAYTPSACHYKV 128 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPP HV F+LATT+ QK+P TILSRC ++ + E Sbjct: 129 YIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPED 188 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++E+I +E + +L++R A+G++RDALS+ D A ++ V M G Sbjct: 189 IAQRVEYIAGQEGLELSGEGAELISRLADGAMRDALSILDTC-AGVTAKIDADVVRRMAG 247 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D + +A+ + +A + + + ++ + L E++ + + L Sbjct: 248 VTDRSYLFRISDALEAQDAAAALAQLAQLRQQSVDVKRLTEELIAHYRALMLAALPGGQA 307 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E E + + + L + + D+R+ +E+ L Sbjct: 308 LLSGVSPEEEKLYLEKGPRMGQREAIRAIRALGNALEHMTRGSDQRIELELALFSLSEPP 367 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 ++ + V P Q P+P ++ P V P ++ V + Sbjct: 368 QQVAV----------QAVPVARPAVPAQEAPRPFASAPVKPFVCAPAASAPVQEPSVEPA 417 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +Q + +P +A +A E + P ++ R Sbjct: 418 PMQQSEPEPAPQPVEPPKAEAAASAEEELPPLPEEPPVTSEAPPPWDEPALAAPPQREAP 477 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS-LPKLVEQV 539 P + P+ + + A WA + L ++ Sbjct: 478 PAPAQEVPAAQPQPEPKPEYTADPALNKPRKVAAEGINPFPQWAEVIKLLQEQDPMLYTY 537 Query: 540 ALNAWKEESDNAVCLHLRSSQRHL--NNRGAQQKLAEALSMLKGSTVEL 586 + V + + R N+ +Q+ + + ++ + G V + Sbjct: 538 LKKSKGYFDGTRVLIDGGKTFRDFIRANKESQKLIKKLIAQVSGVAVPI 586 >UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax=Bartonella RepID=A9IMY3_BART1 Length = 646 Score = 315 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 171/643 (26%), Positives = 280/643 (43%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATP----CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P + ++C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G VS V Sbjct: 189 IEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVSAAEV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPVLSRNWQMLLKGLQEVNQTARPLQATEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E + Q + Q+ ++ Sbjct: 369 LAHTADLPTLDEALKKLTQEKTPLTLVTNSSHQEAISVNNITQETTIDVHASSSVSNTLP 428 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + S ++ A + S + Sbjct: 429 NQSDLKTSLQPPLDHSLKPENFVKNKTHDNAKAQEVIEILETSQSTDFSKNIANLS---- 484 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 V Q E + PK L H+ + L Sbjct: 485 ------HSVTQPVEEITEPKTLVINSLHDIVKLAEQHS---------------DVPFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 V++ + L L + ++K+++ + + Sbjct: 524 VKEFVH--PVSFETGRITLRLSENTPQFLAHDIEKKISQWARKRY------VVTFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESVAIQKTLFSHA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_B4UA58 DNA polymerase III, subunits gamma and tau n=3 Tax=Aquificaceae RepID=B4UA58_HYDS0 Length = 421 Score = 315 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 198/408 (48%), Gaps = 9/408 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY ARK+RP+TF +++GQE T L N +IHHAY+F+G +G GKT+ AR+ AK Sbjct: 1 MSYIPFARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC+ IE+G FVDLIE+DAAS +++ R + + Y P +G++ Sbjct: 61 VLNCLNPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAVREGASYLPMQGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKT+EEPP + F+L TT+ K+ TI SRC + Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I+ L I N+E+I + AL +L+ A+ S+RDA SL DQA G+ +V+ V +M Sbjct: 181 ENIKTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D +E ++E++ + + ++N +G + + I Sbjct: 241 FGPVDKASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKAFAIGE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + + P + G + D + +E+T+L+A Sbjct: 301 AEEEFYKKMLEK--------PLEVFLYLEDIINQGFSAMYQ-KDPILALEITVLKASLIK 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 +P+ E + + E Sbjct: 352 DFVPISELLKESLDLPTKSAEKKTPNEPTEDIKAENSKDQEYPEEVEK 399 >UniRef50_UPI000185C3F0 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C3F0 Length = 944 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 155/580 (26%), Positives = 251/580 (43%), Gaps = 19/580 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARL 57 L RK+RP +FA+VVGQ HV L+ L RI+HAYLFSG RG GKTS AR+ Sbjct: 2 ALYRKYRPASFAEVVGQRHVTDPLSAALESRDAQGRPNRINHAYLFSGPRGCGKTSSARI 61 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 +A+ LNC G TATPCG C +CR + G +D+IE+DAAS VED R+L + + P Sbjct: 62 MARSLNCAEGPTATPCGQCASCRALAPGGPGNLDVIELDAASHNGVEDMRELREKAIFQP 121 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 A R+++++IDE HM++ FNALLK +EEPPEH+ F+ ATT+P+++ TI SR + Sbjct: 122 AESRYRIFIIDEAHMITASGFNALLKIVEEPPEHLIFIFATTEPERVLPTIRSRTHHYPF 181 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVST 234 + L +R LE ++ E + EP L+ +A GS RD+LS+ DQ IA V Sbjct: 182 RLLTPPDMRGLLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQLIAGSGTDGVDY 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +A+LG D +EA+ + + +++ G + ++LG + + + Sbjct: 242 ETSAAILGVTDSVIITDAIEALAAGDRAAMFSVVGRVIMSGQDPARFASDLLGRVRDLLV 301 Query: 295 VQLSPAALGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + P AL + + E A TIPP + + Q L G + R+ +E Sbjct: 302 LSAVPNALEQGLVEIPESQIDGVLEQAGTIPPATLTRFTQVLSDGLRHFRGVTSPRLLLE 361 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + R L + ++ + P SAP + P Sbjct: 362 VLCARMLLPATEDSVESLLQRVEALE--HGRPALADGSGAATPASAPVSSDAGPGSGAAE 419 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 + Q Q + A + + ++ + + + + Sbjct: 420 ADASPMQSGQSAREAWRQRNAQRKKGAQTQGSRAGQAAPAQTPSQPQSQPEPVQQQPAPA 479 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK---TPELAAKLAAEAIERDPWAAQV 527 A + T P + AT + ++ + E + +E E+ + Sbjct: 480 AAAPVSQESVTEPQPAPEAPTATAEQPEQPTQAESVEQPQQAEQPQQSEPAEQPMSEEEA 539 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRG 567 + + ++A +A E L Q+ G Sbjct: 540 QAEKIREFRRKMAEHARISEQQTRAQLAQEREQQTREREG 579 >UniRef50_B7GT66 DNA polymerase III, subunits gamma and tau n=8 Tax=Bifidobacterium RepID=B7GT66_BIFLI Length = 923 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 266/629 (42%), Gaps = 30/629 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFVFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVINHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L L E + AP + M P +A + + Sbjct: 355 ---RLELLAARLLAGSESGFATAAPAPVASGMPPAAASSTTSAASGAGASGFAGSSRGGF 411 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A + + + A+ N + L S P+ A Sbjct: 412 AGASHGGFSGAARNQQVAAPQSTASHESVGGNGPVNGLVSDRPAGSPSVQPAVATAAANA 471 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 + Q A + + + E + RD + Sbjct: 472 GWGAPAASPAAPAQPVASPAASDNRSIDEKWDAAVAALPETIREYVSRDKVPTVKFGPNR 531 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------STVE 585 L +++ K S +A L + +S + A + +A+ G S V Sbjct: 532 KGLP-CLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPSAVA 585 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 ++ +P + + + +A+A Sbjct: 586 ANGERVESVKRMSPEQLAKVKQQIAMAKA 614 >UniRef50_C1F0Z1 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F0Z1_ACIC5 Length = 698 Score = 314 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 189/694 (27%), Positives = 289/694 (41%), Gaps = 64/694 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARK+RPQ F+DV GQEHV L N L+ GRI H Y+FSG RG+GKT+IAR+LA Sbjct: 1 MAYQVLARKYRPQRFSDVAGQEHVTRTLLNALAQGRIAHGYIFSGHRGIGKTTIARILAM 60 Query: 61 GLNCETG----------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 LNC T T PCGVC++C EI VD++EIDAA+ +++ R+L + Sbjct: 61 ALNCRTPIGSTTGSPQRPTPEPCGVCESCEEIRLSNAVDVLEIDAATNRGIDEIRELREA 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +Y P+R R+K+Y++DE H ++ +FNALLKTLEEPP+HV F++ATT+P+ +P TI SRC Sbjct: 121 ARYRPSRDRYKIYILDEAHQITDAAFNALLKTLEEPPDHVVFMMATTEPENIPQTIRSRC 180 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 F A+ + I QL I +E+I E AL LLA A +GS+RDALS+ DQAIAS Sbjct: 181 QHFSFHAVKFDDILAQLRAIATQENIVAEDAALALLAEAGDGSMRDALSIMDQAIASARL 240 Query: 231 Q-----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + + +A+ ++G++ + L+EA+ E V+ +N G L + Sbjct: 241 ENGQPHLDAEAIRELMGSVPNTVFERLLEAISENQSAAVLEELNRLLNAGNSPVQLARQF 300 Query: 286 LGLLHRIAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + L M ++ L R+ A D+ + Q +L EL Y Sbjct: 301 VRYLRNTIMAKIGGEQTDLLQISPDERARVGRSALLFSEEDLTRFLQIMLRTFDELNYRQ 360 Query: 344 DRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTV 403 ++R +E+ L++ + +P+ E A + + S AP V Sbjct: 361 EQRFHLELGLIKLVHLQRLLPVEEFLSQLPPGTGAARSISSATSSPAASRPSPAATAPPV 420 Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 AA + A S A P P Sbjct: 421 RATPPPRPAPAAPASTPEPSRPAFSPFEADRQRKITSEDTAPAPVAAPSAPSIEAATPAP 480 Query: 464 SALEK--------------------------------------APAKKEAYRWKATTPVM 485 S A ++ A+ V Sbjct: 481 SVTTPSVNSVPVTSLPIAPPAEPVPAPMAAQPAPAAPSIPEPVAASRPLTPLEAASRAVE 540 Query: 486 QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK--LVEQVALNA 543 + + + E LA+ AAEA A S L + + Sbjct: 541 AAPAKPSMRVGVAEPERTEGALALASAPAAEADLDHIAQAVCSALEREGHGTASVLLSSG 600 Query: 544 WKEESDNAVCL--HLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601 + + + + ++ L +K+ + G+T +L V + + Sbjct: 601 NWTQQGDTIQVEVAIKRMMLSLTMNAEAEKICKNAMRSIGATQKLVFVPGE-GNRAAGSK 659 Query: 602 WRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 AI + A E + +Q + F E+ Sbjct: 660 PAIAITGSIQSAALE----NPLVQKAKELFRGEI 689 >UniRef50_Q4JSL3 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=Q4JSL3_CORJK Length = 967 Score = 314 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 150/525 (28%), Positives = 227/525 (43%), Gaps = 7/525 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP TFA+VVGQ HV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPATFAEVVGQSHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + G +D+ E+DAA+ V+D R+L + YAPA R++V Sbjct: 62 VEGPTSTPCGKCESCVSLAPGGPGNLDVTELDAATHNGVDDMRELRERAFYAPAESRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM+S FNALLK +EEPPEH+ F+ ATT+P+KL TI SR + + L Sbjct: 122 FIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLAPPD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 +R LE +++ E + E L+ RA GS RD+LS+ DQ +A + V+ A+L Sbjct: 182 MRGLLESVVSGEGVPVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYNRALALL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ E + + A+++E G + ++L + +VQ P A Sbjct: 242 GVTDSTLIDRAVDALAEHDSAALFAVVDEVIDAGYDPRRFSEDLLDRFRDLLVVQAVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L N +RE A + + + G ++ A R+ +E+ R Sbjct: 302 FERGLVNAPEESRDVLREQAEKMGQATLTRCASLVNEGLAQMRGATAPRLLLEILCARMA 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 M + ++ AV T S+ + Sbjct: 362 LPAAGMTVEALAQRVEALEKGNGGAVGTGAGRAGSGAGGSGAGTRAGTGVRGSRAEMFAR 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + Q A + S +A P ++T + + Sbjct: 422 RRKAAQDAAQQSASAQPEPAQAEPAQRVENAPEQNLTAGQEPAAEQPPARSVEPPEAVAE 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 Q+ + A R Sbjct: 482 NSPAKETAQEVSPGTAQGTERGTEPETAQETAEESPAIAEARRAR 526 >UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8U6_TOLAT Length = 760 Score = 314 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 269/615 (43%), Positives = 333/615 (54%), Gaps = 8/615 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQVLARKWRP+ F +V+GQ+HVL AL+N L GR+HHAYLFSGTRGVGKT+IAR+LAK Sbjct: 1 MAYQVLARKWRPRNFHEVMGQQHVLQALSNALDQGRLHHAYLFSGTRGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCETGIT+ PCG C CREI+QG FVDL+EIDAASRTKVEDTRDLLDNVQY PARGRF Sbjct: 61 CLNCETGITSRPCGQCSACREIDQGNFVDLLEIDAASRTKVEDTRDLLDNVQYKPARGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL Sbjct: 121 KIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALTR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI QL+ +L E + +EP AL LLA+AA+GS+RDALSL+DQAIA G+G + + V M Sbjct: 181 EQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSLSDQAIAYGNGLLQAETVQQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGTLD Q ++ + +G +M I A +++ L VE+ LLHR AM QL Sbjct: 241 LGTLDHRQLYQILSLLAARDGAALMQQIGSLAELAPDYDQLHVELASLLHRTAMWQLLGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A ++ LA IPP ++QLYYQ L GRKELP APD R +EMTLLR LAF Sbjct: 301 Q-TEPGADDTEELQLLAEQIPPEELQLYYQITLNGRKELPLAPDGRSALEMTLLRMLAFA 359 Query: 361 PRMPLPEPEVPRQ----SFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 PR P Q + AP A T + A Sbjct: 360 PRAGRPAITEQPQLIHRNTAPAASFVATPARPDVIPAAVPVAPPVTASAAVEDLAMQAKL 419 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q Q A ++ +P + PV A ++ Sbjct: 420 MQEQAELMAQAEQEMQPRPLPVSPPVTEAPAPVAVIPAVAPATPAASGPEVNNSGVQDII 479 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 R + +Q+ T + A+ + P ++A P Q P++ Sbjct: 480 RLRNQLRSRRQQAENQTESHVTPAVMPARIPANRGEIAPLPATAAPARTVAPQDVQPQVA 539 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAV 596 AL + L Q + ++ A P + Sbjct: 540 GNRAL-SDDLPPWELPPLTAYQDQEAFISPVDSEQDNAA--PSFKQRQSDRFTPSAPPVM 596 Query: 597 RTPLEWRQAIYEEKL 611 ++ + E Sbjct: 597 QSNPAPVSRLPETDE 611 Score = 95.1 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 88/269 (32%), Gaps = 1/269 (0%) Query: 376 APVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 + Q A A + + A + V + Sbjct: 483 NQLRSRRQQAENQTESHVTPAVMPARIPANRGEIAPLPATAAPARTVAPQDVQPQVAGNR 542 Query: 436 ATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPK 495 A A PV S + A + + TP Sbjct: 543 ALSDDLPPWELPPLTAYQDQEAFISPVDSEQDNAAPSFKQRQSDRFTPSAPPVMQSNPAP 602 Query: 496 ALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCL 554 + E + D WA V++L + V Q+A+ A + ++ L Sbjct: 603 VSRLPETDEDDDSVWRSNELLLRSSDQWAQTVAKLPVAGRVRQLAMQAVVTDQQADSWHL 662 Query: 555 HLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 +R+ RHL Q+LAEA+S + + + L + A+ P E Q +A Sbjct: 663 QIRNEARHLAQPRMVQELAEAISTILPTAINLQVEPVVQLALPCPAEIEQQERIRLQQEA 722 Query: 615 RESIIADNNIQTLRRFFDAELDEESIRPI 643 +++D N+Q L++ F A LD+ SI+P+ Sbjct: 723 ELLLLSDPNVQFLQQRFGATLDDGSIQPL 751 >UniRef50_C6HVG4 DNA polymerase III, subunits gamma and tau n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVG4_9BACT Length = 576 Score = 314 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 257/564 (45%), Gaps = 4/564 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ + LAR +RP+TF+D++GQE V+ +L GLS G + AYLFSG RGVGKT++AR+LA Sbjct: 1 MAKFASLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NC++G TATPC C +C EI +GR D+ E+D AS T V+D R L +++ YAP R Sbjct: 61 KAINCQSGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYAPLTSR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++ +IDEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P T+LSRC F + L Sbjct: 121 SRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQHFRFRLLT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V QI ++ H+ E+I+ P ++ARAAEGSLRDALSL DQ + +G ++ V+ Sbjct: 181 VSQISDRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQLLRTGGESLTPADVAD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG D ++ A++ + + A G++ A + + I L Sbjct: 241 LLGVTDHALEEKMLAAILLGDLSATLRTARTALDTGVDPRAQVRSLARRFRDILHSTLDG 300 Query: 300 AALGNDMAAIELRMRELARTIPPT---DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +L + + + PP ++ L+ G +L +P + E+ L R Sbjct: 301 TSLDSPIYGWIPESVQALPLDPPPNIFFLEQALSVLVKGEDDLRRSPQPAITFELLLARL 360 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 +PLPE +P++V + T E Sbjct: 361 CHLREVLPLPEILAKIGVAGATSPSSVRSLGPKTHNSSPPTPLPTTEVPTEVFPSPPEES 420 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 Q + A + R AL RL + +E+ + Sbjct: 421 SLQQAMPQEIPAPVDDGPLDLRIPADWPRALSRLPHEMAALLESVRTRRIEQNTLYLDTG 480 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 T + ++ +A +L E + S + Sbjct: 481 NSFFNTRIQASRDPLAKALSLAIKSPEPLRIETPTLSRKGNSTGQITSEIASSGDKRERR 540 Query: 537 EQVALNAWKEESDNAVCLHLRSSQ 560 L + + L +RS Q Sbjct: 541 NLPPLVSDAVSLFGSEVLDVRSPQ 564 >UniRef50_B6J935 DNA polymerase III subunit gamma/tau n=6 Tax=Coxiella burnetii RepID=B6J935_COXB1 Length = 509 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 229/505 (45%), Positives = 312/505 (61%), Gaps = 4/505 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++QVLARKWRP+ F +V+GQ V+ AL+N L +HHAYLF+GTRGVGKT+I+R+LAK Sbjct: 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE G++A PC C+NCREI++GRF DL E+DAASRTKVEDTR+LLDN+ YAP +GRF Sbjct: 61 CLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKF+LATTD KLPVT+LSRCLQFHL L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +H+L EE++ E AL LLARAA GS+RDALSL DQ+IA G+G+V V M Sbjct: 181 LQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT++ ++EA+ G+R++ + +G+++ L ++L LLH+IA++Q P Sbjct: 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 AL + + ++R+LA+ + D+QL+YQ LIG+++L Y+P + G EMTLLR LAF+ Sbjct: 301 ALIENDS---EQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFY 357 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P PE + A V PT + T P T+ L + S +L Sbjct: 358 PSAANAIPETESK-EAVVTPTPKSSETSWPQLLSQLKLTGATLALAQQCSLKELTDNRLY 416 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + R V + R +V + + A K + + +A Sbjct: 417 LMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDISNHQTETPAALAQKKAQDRQTEA 476 Query: 481 TTPVMQQKEVVATPKALKKALEHEK 505 +M ++V + L E Sbjct: 477 EKRMMNDRQVQRIMQTFDATLVKES 501 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNA 551 E + A W +SQL L +A KE +DN Sbjct: 355 AFYPSAANAIPETESKEAVVTPTPKSSETSWPQLLSQLKLTGATLALAQQCSLKELTDNR 414 Query: 552 VCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKL 611 + L L Q+ L + ++++E LS T+ + I ++ TP Q +++ Sbjct: 415 LYLMLNPKQKPLLQQKHIERISEVLSEHFNRTITVKIDISNH-QTETPAALAQKKAQDRQ 473 Query: 612 AQARESIIADNNIQTLRRFFDAELDEESIRP 642 +A + ++ D +Q + + FDA L +ESI P Sbjct: 474 TEAEKRMMNDRQVQRIMQTFDATLVKESIVP 504 >UniRef50_B2V5N0 DNA polymerase III, subunits gamma and tau n=4 Tax=Hydrogenothermaceae RepID=B2V5N0_SULSY Length = 501 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 140/410 (34%), Positives = 211/410 (51%), Gaps = 12/410 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ +RK+RP++F +V+GQEHV+ L N + L R+ HAY+FSG RGVGKT+IAR+L+K Sbjct: 1 MAYEAFSRKYRPKSFQEVIGQEHVVKTLKNAVKLDRVSHAYIFSGPRGVGKTTIARILSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ + C C+NC EI++G F D+ EIDAAS ++D R + DNV Y P +G++ Sbjct: 61 VLNCKNPVDYESCNQCENCIEIDKGSFPDMYEIDAASNRGIDDIRMIRDNVGYQPIKGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HML++ +FNALLKTLEEPP F+LATT+ K+P TI SRC F K Sbjct: 121 KVYIIDEAHMLTKEAFNALLKTLEEPPPRNIFILATTELYKIPETIKSRCQTFIFKPPTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI++ L ILN E I +E A++LLA+ EG +RD+ SL DQA+ +G+++ + V + Sbjct: 181 EQIKNYLLRILNNEKIPYEEDAVELLAQELEGGMRDSASLLDQAVTYAEGKLTRKDVEEI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + + + + LI+ G + ++L +H+ + Sbjct: 241 LGIVPYSYVQKFLRNIKDLKVDENIKLIDTLEDEGYDINVFWKQLLEAIHKTLIDLALDK 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + E D + +T+L+ L Sbjct: 301 EDEIFSKE------------DLKSLIYLKTIFTKTYSEARTFFDPKQIYHLTILKTLYLD 348 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + + P V+ P + Q QQ P E Sbjct: 349 SIKRIEQLFAEGVQVVPKKEPEVLKQEIKPQEKQETKQQEEIKPKEEQKQ 398 >UniRef50_A7BAA1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAA1_9ACTO Length = 967 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 161/626 (25%), Positives = 249/626 (39%), Gaps = 19/626 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP TF V+GQEHV L L R+ HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCG C++CRE+ G +D++EIDAAS V+D RDL + +AP R R+K+ Sbjct: 64 AQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRDRYKI 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P+++ TI SR + + + + Sbjct: 124 FIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPPDV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 + L + +EEHI L L+ RA GS+RD LS+ DQ +A DGQV+ Q A+L Sbjct: 184 LGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVLDQLMAGAIDGQVTYQTAVALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ +G ++ G + + ++L L + ++ ++ Sbjct: 244 GYTDSALLDESVDALAGGDGAAAFRVVERMVESGHDPRRFVEDLLQRLRDLLIIAVAGDG 303 Query: 302 LGNDMA----AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + +A RM+ A+ P + + + A R+ +E+ + R L Sbjct: 304 ARDVLADTPHDQFERMQRQAQNWGPHGLSRAADLTDEALRAMTGATSPRLQLELLVGRIL 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP----QSAPQQAPTVPLPETTSQVL 413 P + AP P+ ++A E Sbjct: 364 VPSPGPAQAPVQGTVGMTGGGAPREASAPSSSKASSGRFGAREAREALARKKQERAEVSA 423 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A Q + A E ++ + A Sbjct: 424 PAAQAPASSAAPAPQGMPAWGSGPDWSAQKPVAPEPSSAPAQAARQEAPRHEAAHETAPA 483 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P + + E E A + R W V +LS Sbjct: 484 REATPAQAEPRPAAPPQQRHESSAPQRSETPARAEAPAWGRNADMLRGRWNEVVERLSSI 543 Query: 534 KLVEQVAL---NAWKEESDNAVCLHLRSSQ--RHLNNRGAQQKLAEALSMLKGSTVELTI 588 V + + V L + + +A++ + G TV ++ Sbjct: 544 SRVTWSMVGGNAQLGAVDGSQVVLLFPVEAMVNAFSRGPRAADVEKAINEVTGLTVSVSA 603 Query: 589 VEDDNPAVRT---PLEWRQAIYEEKL 611 P Sbjct: 604 QVGQASGGAATTGPSAQASHPGPAAQ 629 >UniRef50_C8X0H8 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H8_DESRD Length = 538 Score = 313 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 160/533 (30%), Positives = 256/533 (48%), Gaps = 7/533 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L +RPQTF+ VVGQ+ V T L+ + ++ AYLFSGTRGVGKT++AR+LAK Sbjct: 1 MSPGPLTHTYRPQTFSTVVGQKQVRTILSRAAAENQVAPAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE G + PC C +CREI QG VD++EID AS T V+ R L ++V YAP R+ Sbjct: 61 AINCEQGPASEPCNQCRHCREITQGTGVDVVEIDGASHTGVDHVRKLKEDVGYAPLSCRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDE HMLS+ +FNALLKTLEEPP F++ATT+P + P TI+SRC + L Sbjct: 121 KVIIIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHIFQRLRQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ L +L E I + A++L+AR GS+RDA+SL Q +A G ++ + V + Sbjct: 181 EELTDHLRRVLENEAIEMDAEAVRLIARKGAGSVRDAMSLLAQVLALGQRRLESAHVREV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + LSL EA+ + + + ++ +G++ L E+ + +++ S Sbjct: 241 LGLAGQETLLSLFEALRDQDCIAINTVLRSVLDQGLDLAFFLRELTATWRNLFLLKQSGE 300 Query: 301 ---ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +L + + A + I +Q L G++ + + + + +E+ LL Sbjct: 301 GALSLLDLPQEEAREWLQWAEAFSASHIHACWQMTLEGQRRVLTSVEPALALELLLLNLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PL +P AP + P + AP P++ Q A Sbjct: 361 FMQDLVPLGQPGSGSSGPAPGSAGGTSGRRASGAAPAGSQTAAPQ--KPQSPVQSAAESS 418 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + +G + + P N + R+Q + A A +K+ Sbjct: 419 EEKTWEGFVRYCQQAVEGEAAKLPGLNHVQGEIDGGCLRIQCQSRVQAERFAVTEKKNLL 478 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + + + + A T L ++ ++ +A +QL Sbjct: 479 HDLACQYFETDMELEVHQPKESAPPDRNT--LKKEVLEHPAIQEALSAFQAQL 529 Score = 48.1 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 59/240 (24%), Gaps = 21/240 (8%) Query: 410 SQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKA 469 Q A + + + ++E ++ + L Sbjct: 309 PQEEAREWLQWAEAFSASHIHACWQMTLEGQRRVLTSVEPALALELLLLNLAFMQDLVPL 368 Query: 470 PAKKEAYRWKATTPVM-QQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQV- 527 A + + P+ + AAE+ E W V Sbjct: 369 GQPGSGSSGPAPGSAGGTSGRRASGAAPAGSQTAAPQKPQSPVQSAAESSEEKTWEGFVR 428 Query: 528 --SQLSLPKLVEQVALNAWKEESDN---AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 Q + + LN + E D + R + L + + Sbjct: 429 YCQQAVEGEAAKLPGLNHVQGEIDGGCLRIQCQSRVQAERFAVTEKKNLLHDLACQYFET 488 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 +EL + + A ++ ++ IQ F A+L E +RP Sbjct: 489 DMELEVHQPKESAPP------------DRNTLKKEVLEHPAIQEALSAFQAQLVE--VRP 534 >UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8P5_CAPOD Length = 569 Score = 313 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 143/638 (22%), Positives = 250/638 (39%), Gaps = 74/638 (11%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M++ V ARK+RPQ+F DVVGQ+ + L N + + A LF+G RGVGKT+ AR+LA Sbjct: 1 MNHFIVSARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQALLFTGPRGVGKTTCARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +N +T E ++ E+DAAS V+D R L++ V+ P G+ Sbjct: 61 KKINEQTSGVED-----------ENDFAFNVFELDAASNNSVDDIRKLIEQVRIPPQVGK 109 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDEVHMLS +FNA LKTLEEPP+H F+LATT+ K+ TILSRC F K + Sbjct: 110 YKVYIIDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRIT 169 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + IR L++I ++ I E ALQ++A+ A+G++RDALS+ D+ ++ +++ QA S Sbjct: 170 INDIREYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFSGEKITRQATSE 229 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +L LD + + + +++ ++ N++ A+G + + + + + + Sbjct: 230 ILNVLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFDGNHFIAGLASHFRDLMVCKNPT 289 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +L + + E + + + + ++R+ VE+ L++ + Sbjct: 290 TISLMEVGEETQKKYAEQSVRATVPFLMEAIAIANDCDLKYRTSKNQRLLVEVALMQLAS 349 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + A V T T + Sbjct: 350 LTYEGDKKKNDGRFIIPAYVFNGQSHTTEVRINSQTPIVAPPINYTNTTTATLNPNIPII 409 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + S + + N V P E + W Sbjct: 410 SKTERTEAVSNFSIKSVHLKTEHQRN---------FKEVVIDPNTLPRESFSEETFNQFW 460 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + K LK A Sbjct: 461 ERYIDELLVKGERIQASILKIA-------------------------------------- 482 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS-TVELTIVEDDNPAVR 597 + L + S+ + + KL L + + + I ++ Sbjct: 483 -----ILRLEGTTIHLEVSSNTAKNDIVQMEHKLLNYLHKSLQNYDLTIEISVNE----- 532 Query: 598 TPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAEL 635 E + I + + + + +Q RR F+ L Sbjct: 533 ---EIAKRIVVTPEDKYEKLLEENPILQEFRRAFELNL 567 >UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 Tax=Gammaproteobacteria RepID=A1AWB5_RUTMC Length = 529 Score = 313 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 181/404 (44%), Positives = 252/404 (62%), Gaps = 9/404 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQVLARK+RP +F +VGQ H L N L +HH +LF+GTRGVGKT+IAR+L Sbjct: 1 MSEHYQVLARKYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARIL 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK +NCE GI++ PC C C EI++G+ +DLIE+DAAS T V++ RD+L+N QY P++ Sbjct: 61 AKSINCEQGISSKPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMRDILENAQYMPSKN 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+YLIDEVHMLS++SFNALLKTLEEPPEHVKFLL TTDPQKLPVT+LSRCLQF L+ L Sbjct: 121 RYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTLQQL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++I QL+ I+N E +++E AL +A GS+RDALSL DQ+I+ G G V+ + Sbjct: 181 THDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISYGKGTVTNADIK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 AMLG + D + L + + + V+ I + + RG L ++ L H+I++ Q Sbjct: 241 AMLGLVHHDDIIKLTTHLFSQDAKAVIDFIKDLSRRGENLSNALKDLSSLFHKISISQ-- 298 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ L+ I D+Q++YQ + G K++ AP ++G EMTLLR LA Sbjct: 299 -----IVNTESNKTIQNLSTQISNFDLQIFYQMSINGSKDMALAPSEQIGFEMTLLRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 F + + + V +A + P + PT Sbjct: 354 FRSDTQPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGITKPT 397 Score = 77.0 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 3/194 (1%) Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 A + A + ++ + ++ P K + E+ P + Sbjct: 335 ALAPSEQIGFEMTLLRMLAFRSDTQPNTEKKMIEIKSEVKISAPIEEKLQPKVEEKPGIT 394 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN-AVCLHLRSSQRHLNNRGAQ 569 + + W + L + + N + ++N + L L + +L + Q Sbjct: 395 KPTILDINNQQQWETLIQTLEFKNGAQILVKNTLFDNTNNATLTLTLDNQFANLLSDQVQ 454 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 + + L ST+ L I P +T + + + EK+A+ + + D +Q L + Sbjct: 455 KSMLTTLRQK-NSTLNLVINLG-KPNAQTLAQKQTQAHNEKMAKIQTQFLNDKGVQKLEK 512 Query: 630 FFDAELDEESIRPI 643 FD +++ SI+ I Sbjct: 513 IFDTKININSIKKI 526 >UniRef50_C2L1L6 DNA-directed DNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2L1L6_9FIRM Length = 526 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 135/417 (32%), Positives = 213/417 (51%), Gaps = 3/417 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY L RKWR + F D+VGQ+ + + N +S RI HAYLF GTRG GKTS+A++LA+ Sbjct: 1 MSYTALYRKWRSRDFDDLVGQDAITRSFKNQVSHDRIGHAYLFCGTRGTGKTSMAKILAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC PC C NC+ I +++ E+DAAS KV+D R + + V+Y P R+ Sbjct: 61 AVNCLNPKDGNPCNECANCKAILSNTSINVYEMDAASNNKVDDIRLIREQVEYPPVGMRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ + NA LKTLEEPPE+ F+LATT+P LP+TILSRC ++ + + Sbjct: 121 KVYIIDEVHMLTESAHNAFLKTLEEPPEYAIFILATTEPNALPITILSRCQRYDFRRIPA 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSA 239 + I +L HI+ EEHIA E A+ +AR +GS+RDA+SL DQ + ++S + Sbjct: 181 DIIADRLRHIVEEEHIAIEEEAIHYIARMGDGSMRDAVSLLDQCASYDFQREISYEDTLK 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS- 298 +LG +D ++ ++ E + + M L++E +G E ++L I + + Sbjct: 241 ILGAVDTAAFSQMIASLREKDIAKAMTLVSEVLEQGKELSQYTSDLLNYYRNIMLAKTVE 300 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + A + ++ ++ +I + L ++ +A +R+ +E TL++ Sbjct: 301 KIDGLMDLSAENKKQLLSDGESLSMEEILRGIRLLTELLQQYRFARQKRVLLESTLVKLA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + P + + P E Sbjct: 361 HPEMEGKTDALLQRLRELEEKMEKGSFLPVERTAFSKEENGDVPEAMEKEVVLPKAQ 417 >UniRef50_B5EJD9 DNA polymerase III, subunits gamma and tau n=3 Tax=Acidithiobacillus RepID=B5EJD9_ACIF5 Length = 572 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 225/530 (42%), Positives = 297/530 (56%), Gaps = 4/530 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y LAR+WRPQ F D VGQE V++AL + L GRIHHA+LF+GTRGVGKT++ARLLA Sbjct: 1 MSAYLALARRWRPQHFDDFVGQEAVVSALRHALDSGRIHHAFLFTGTRGVGKTTLARLLA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNCE G+++ PCG C CR I G FVDL+E+DAASRT+V++TRDLLDNVQYAP GR Sbjct: 61 KCLNCERGVSSNPCGECSACRSIAAGNFVDLLEVDAASRTRVDETRDLLDNVQYAPTAGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K YLIDEVHMLS HSFNALLKTLEEPPEHVKFLLATTDPQKLP+T+LSRCLQF+L+ LD Sbjct: 121 YKAYLIDEVHMLSAHSFNALLKTLEEPPEHVKFLLATTDPQKLPITVLSRCLQFNLRRLD 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V QI+ +L I++ E + E ALQ+L+RAA+GSLRDALSL DQAI G G V V A Sbjct: 181 VPQIQGRLRQIMSLEQVPAEDAALQILSRAADGSLRDALSLLDQAIVHGGGAVRRDGVLA 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 MLG DD L L+ A+V+ + +V A++ + ARG++ LL ++ LHRIA+ Q P Sbjct: 241 MLGRSGDDAVLGLIAALVDRDAAQVFAIVGDHLARGMDGPGLLDLVIEGLHRIALAQFLP 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A +D A + +R I P +Q +Y LL R++ PD RM +EM LR L+F Sbjct: 301 ADPDDDGAEAVVHLR---GRISPLTLQSWYFLLLSARRDFALYPDDRMALEMAFLRVLSF 357 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P P + PT+ P++ + + R+ Sbjct: 358 SGSASPDSPPAALPGGENRHPGESLPPTREFVMPEATSPLSDHSVPLLSIRSRDEVREPS 417 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 + + A A R V + + + E E Sbjct: 418 PVATSGQRDADAGTAPAADWRRVLASLAVSPMIAEYLRYGQALRCDPEAVELAVEPNYLP 477 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ 529 ++ + A L + ++ ++ A S+ Sbjct: 478 FLLKTEARRALHQALTAYYGREPRLSIVALTIETGVGSLVQEDRAQLASR 527 >UniRef50_Q6NJY2 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium diphtheriae RepID=Q6NJY2_CORDI Length = 707 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 145/526 (27%), Positives = 232/526 (44%), Gaps = 7/526 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+TPCG C++C + +D+ E+DAAS V+D R+L D YAPA R+++ Sbjct: 62 VEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNRSVDDMRELRDRAMYAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITRDGANALLKIVEEPPAHLIFIFATTEPEKILPTIRSRTHHYPFRLLTPQS 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + EH+A E L+ RA GS RD LS+ DQ IA +G + +L Sbjct: 182 MRGLLERTVASEHVAVEDSVYPLVIRAGGGSPRDTLSILDQLIAGAGPDGLDYNLARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + ++A+ + + ++++A G++ ++L + ++Q P A Sbjct: 242 GATDDTLIDTTIDALAGNDNAALFQVVDDAIEAGLDPRRFATDLLDRFRDLMVLQSVPDA 301 Query: 302 LGN----DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L +R+ A +P + + G + L A R+ +E+ + L Sbjct: 302 LTLGLVDAPTDRGDILRDQATHLPAGEAARLAALVNDGLRGLKGATSPRLLLEILCAKML 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + AP + + P + Sbjct: 362 LPSAQPAATATAPAAAAPAPAPTEIPAKYERRSVRLAREAAARKNAEAPAPEPAPEPKPE 421 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + A + N+ L S + R + + A+R Sbjct: 422 PKPEPRDGFATIQEKWATISDVIFKANSVAGILLSQATLLGLRDDSTLVIGHNTGALAHR 481 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + L +E + A +E + W Sbjct: 482 INDPQHAGSIVTAIKQETDLDVTIECVVGTDPKAAGFSEPENKKVW 527 >UniRef50_D1NVX1 DNA polymerase III subunit gamma/tau n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NVX1_9BIFI Length = 935 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 158/646 (24%), Positives = 265/646 (41%), Gaps = 30/646 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF VVGQ+ V L L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 5 MA-LALYRRYRPDTFEGVVGQDQVTVPLMRALDANKLTHAYLFSGPRGCGKTSSARILAR 63 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS VED R+L D +APAR Sbjct: 64 CINCAQGPTSHPCGECESCKDLANGGPGSIDVVEIDAASHNGVEDARELRDRAGFAPARD 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P+++ TI SR + + + Sbjct: 124 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPERVIGTIRSRTHHYPFRLV 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I +EHI EP L+L RA GS+RD LS+ DQ + DG+++ + Sbjct: 184 PQEIMGPYLEQICEQEHIEAEPGVLRLAMRAGGGSVRDTLSVLDQLMVGAVDGEMTYDSA 243 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D V+A++ +G + +I + G + + ++L + ++ L Sbjct: 244 VALLGFTPDVLISEAVDAVINRDGAALYGVIQKVIVGGFDARRFVEDLLAYARDLLVLTL 303 Query: 298 SPAALGNDMAA----IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + ++ + A+ + I +T+ ++ A RM +E+ Sbjct: 304 AGDKAESVLSDDAAENREDLHRQAQALGLPAITAMAETINQALVQMVGAVSPRMRLELLA 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 R LA L R+ A V + P +T S Sbjct: 364 ARLLATREPGALQSGAAMREGDADVETHHKAPAPHGGFIGAGRKEMQPAATTAQTASATT 423 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 + + + A S+ A+ A +A A + P Sbjct: 424 QSASAPAQTPSGSPAATSQRQASQAAAAPADAYASAATHAAAADAAATDAWGV-AMPVMP 482 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + + + + + + A + W A V+ L Sbjct: 483 ATSAAASPSSPSSPAASADGSASAHASGTAADASQASTSAAMSGTPDERWDALVASLPEQ 542 Query: 534 KLVEQ-------VALNAWKEESDNAVCLHLRSSQRHLN------------NRGAQQKLAE 574 + + L A + + + + Q + Sbjct: 543 IRMYVDRTHVPRINLAADPRTGAQRLWIKFDTPLSKYAFAFAVANESIGGSNRVQDIVRA 602 Query: 575 ALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 + + G V L + P + +E+ + I+ Sbjct: 603 KVHEVFGDQVSLAPTQKMANGEVAP--PVSRLTDEQRKTIKAQIMQ 646 >UniRef50_B8DVK2 DNA polymerase III, subunits gamma and tau n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DVK2_BIFA0 Length = 850 Score = 311 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 156/636 (24%), Positives = 259/636 (40%), Gaps = 53/636 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L + L ++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMHALDENKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R Sbjct: 60 CINCVKGPTSHPCGECDSCRDLATGGPGSIDVVEIDAASHNSVDDARELRERAGFAPVRD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEH+ F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHLMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LEH+ +EHI EP L+L+ RA GS+RD LS+ DQ + D ++ + Sbjct: 180 PPEIMTPYLEHVCEQEHIETEPGVLRLVTRAGGGSVRDTLSVLDQLMGGCVDNDITYDST 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG D ++A++E NG ++ +I + G + + ++L + ++ L Sbjct: 240 VALLGFTPDALLGEAIDAIIEQNGAKLYGIIQKVIVAGFDARRFVEDLLVRTRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + ++ + A + + + + + A RM Sbjct: 300 GGDEAEHVLSDDAEAEDMSDLHRQADALGLQQLTAMAEIMDDTLGHMAGAASPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + + A + + +++ Sbjct: 355 ---------------RLELLAAKLLAGRASGFAAEAPALAGAGARGSSAAPSATQGSARG 399 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 Q A + + + T A P A P+ Sbjct: 400 GFVDAQRPSGFNDGATAPQSGHDTPTQAAAPTATPQAIQAATTEHDAGSQPQAASNVPSI 459 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 E + T V A P ++ + E+ P + + ++ + W + L Sbjct: 460 PEDIQRNGTVDERWDAIVAALPLDVRAYINRERVPRVMLAMDRKSGRQRLWIKFETPLDK 519 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV--- 589 AL KE + + + G V L Sbjct: 520 ----YAFALAVSKEPIGGT--------------TSVVSIVRTQVHNVFGPDVALAPTEKM 561 Query: 590 ---EDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622 E P + P E Q I + L Q+ + I+A Sbjct: 562 ANGESAPPLSKLPPEEAQRIKAKLLQQSLQGIVAHP 597 >UniRef50_D2NPN5 DNA polymerase III, gamma/tau subunits n=2 Tax=Rothia mucilaginosa RepID=D2NPN5_9MICC Length = 972 Score = 311 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 158/605 (26%), Positives = 258/605 (42%), Gaps = 17/605 (2%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+TFA+V+GQEHV L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 30 ALYRRYRPETFAEVIGQEHVTEPLMVALEKNRVNHAYLFSGPRGCGKTTSARILARCLNC 89 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVCD+CRE+ + G +D+IE+DAAS V+ RDL + AP R R+K+ Sbjct: 90 AQGPTPTPCGVCDSCRELSRDGGGSLDVIEMDAASHGGVDHARDLRERATLAPVRDRYKI 149 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++R FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + E Sbjct: 150 FIIDEAHMVTREGFNALLKIVEEPPEHVKFIFATTEPNKVLGTIRSRTHHYPFRLVPPEV 209 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDGQVSTQAVSAM 240 + L+ + ++E +A EP LQL+ RA GS+RD+LS+ DQ + AS + A+ Sbjct: 210 LLPFLQGLCDQEQVAVEPGVLQLVIRAGGGSVRDSLSILDQLMAGASSQNGIEYDRAVAL 269 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++EA+ + + ++ A G + + ++L L + +V+ P Sbjct: 270 LGYTHAQLLDEVIEALGAKDAPTLFGAVSRVVATGQDPRRFVEDLLERLRDLIVVKAVPQ 329 Query: 301 A----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L R+ + A+ + ++ + T+ + A + ++ +E+ R Sbjct: 330 AAGQILQGVPQDQLERLAQQAQALGERELTVAAGTVNETLNGMTGAANPQLQLELLCARL 389 Query: 357 LAFHPRMP-----LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 L + Q + + + + Sbjct: 390 LLPAVEGSAGGAEVAALASRLQVLERRVASGAAGSAGSAGSAPAQGGMSAARAAGMAAAG 449 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 + Q +A + + + +A LA V + A A Sbjct: 450 LAPKTQVSAPQTSQEQAAPQQSGSQQGSSQQASAGAPPLAGAPLSVAPLAPTAQESAAGA 509 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 531 A + A + L A + W A ++++S Sbjct: 510 PLAGNTPAAPHAPAAPNVPASPAAAAAGTPSAPLKLDPNDPL---AAVQGNWRAILNRMS 566 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 +P EQ+ + + + +G +L +S V + Sbjct: 567 VPGAAEQLMKVRPARMDGATLYVSADIATLR-AVKGFVPELTARVSEFLRRQVTIHAQVA 625 Query: 592 DNPAV 596 Sbjct: 626 KPGEQ 630 >UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Tax=Alphaproteobacteria RepID=C6ABP2_BARGA Length = 646 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 171/643 (26%), Positives = 285/643 (44%), Gaps = 44/643 (6%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RPQ F+D++GQE ++ L N GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 9 AYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARA 68 Query: 62 LNCETGITATPCGVCDN----CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P V D+ C +I +GR +D+IE+DAAS T ++D R++++ ++Y P Sbjct: 69 LNYKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS 128 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+TILSRC +F L+ Sbjct: 129 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + + L I E + E +AL ++ARAAEGS RDALS+ DQAIA +G V+ AV Sbjct: 189 IESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVNAIAV 248 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D + + L E +++ + + + G + +L E+ H + ++ Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADFNHLVTRLRF 308 Query: 298 SPAALGNDMAAIELRMREL--ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P + + E R+R L ++ + + +Q LL G +E+ EM L+R Sbjct: 309 TPEIVEDFSLTEEQRLRSLDFSKKLSVPILSRNWQMLLKGLQEVNQTARPLQAAEMLLIR 368 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E + Q + ++ ++ Sbjct: 369 LAHTADLPTLDEALKKLTQEKTPLTLVKNSSHQESTNANNITKETMVEAHASSSVSNTLP 428 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + + S + + + T S ++ Sbjct: 429 DQSDLKTSLKNQLDHSLQPENLVKNQTPDKINVQEVTETLENSQSIDLSEKSANLSRS-- 486 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 + + E P+ + I + A Q + L Sbjct: 487 ---------------------VTQTTEKITQPKTLVINSLHDIVQ--LAEQHNDAPFKLL 523 Query: 536 VEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 +++ + L L + ++K+++ TI + Sbjct: 524 IKEFVH--PVSFEAGHITLRLSENTPQFLAHDIEKKISQWTEK------RWTITFVNEGG 575 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDE 637 T E AI + + A D +I + F +A++ + Sbjct: 576 GPTLQEESIAIQKTLFSNA----ETDPDIAKILNHFPEAKIVD 614 >UniRef50_Q3B0U5 DNA polymerase III, tau subunit n=14 Tax=Cyanobacteria RepID=Q3B0U5_SYNS9 Length = 625 Score = 311 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 169/643 (26%), Positives = 269/643 (41%), Gaps = 31/643 (4%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS YQ L K+RPQ F +VGQE + L N L+ RI AYLFSG RG GKTS AR+L Sbjct: 1 MSSTYQPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC+ G T PCG CD CR I G +D+IEIDAAS T V++ R+L++ ++AP Sbjct: 61 ARSLNCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 + R+KVY++DE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC +F + Sbjct: 121 QARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFR 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + ++ + L I +E IA +P A+ ++A+ ++G LRDA SL DQ + A Sbjct: 181 RIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLL-PPPIEANA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + + + L+L +AM + ++ RG + A+L + G+L + ++ Sbjct: 240 VWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLVLMA 299 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P ++ ELA++I T + + L ++L + R Sbjct: 300 AAPNRPELTGVSPQFRDQLPELAKSIGRTRLLQWQAQLRGAEQQLRQSVQPR-------- 351 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + P+ A VP+ T Sbjct: 352 --------------LWLEVLLLGLLAEPMSPALATAPRTPQATPAPAAVPVLVTADAPTP 397 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 AT + A V A S T+ + + P+ + Sbjct: 398 TATTPAATTPATPSPSPAQAKTPELPTVAAVAPTPATSGTNLPELWQQILGSLELPSTRM 457 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 +A + V + + L +A + + Sbjct: 458 LLSQQAQLVRLDANRAVVQVAGNWMGMVQSRASLLEQAVAKA--LGGSRQLIIEASTSAI 515 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNP 594 + + + L + +A + + T + P Sbjct: 516 AATSAPTAPLVQPPPQTAPAPVETETPQLPKTEVVPAVVDASTPITRLTTQEPAKPPATP 575 Query: 595 AVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + + QA + A ++ D + L FF+ ++ + Sbjct: 576 SPVAISQPVQAEPAQNPANPSPALGLDRQAKNLADFFNGQVLD 618 >UniRef50_Q1MPV7 DNA polymerase III, gamma/tau subunits n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPV7_LAWIP Length = 574 Score = 310 bits (794), Expect = 8e-83, Method: Composition-based stats. Identities = 138/348 (39%), Positives = 206/348 (59%), Gaps = 3/348 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LA ++RPQ+F +VVGQE V L+ + ++ AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKQVSLAIRYRPQSFKEVVGQEIVKKILSRAAAESKVVPAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ TA PC C+ C+ I +G VD++EID AS V+D R L +++ YAP GR+ Sbjct: 61 ALNCQQAPTAEPCNTCEQCKRITKGIHVDVVEIDGASNRGVDDARRLRESIAYAPMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R SFNALLKTLEEPP F+ ATT+P K PVTI+SRC F LK L Sbjct: 121 KVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLTK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E++ + L H+L +E+I +E A+QL+AR A GS+RD++SL Q + +G ++ V + Sbjct: 181 EELIYNLIHVLKQENICYEDNAIQLIARRASGSIRDSMSLLGQTLMFSNGILTENVVRNV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG + + L+ A + N E V+ L +G++ L E L + +++ Sbjct: 241 LGLAEQEFYEKLLRAFKDQNYEEVVKLNQILLEKGVDLGFFLREFATLWRNLFLLRKVSK 300 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 A + + R+ LA P + +Q +L ++++ + + Sbjct: 301 LDANMLGMLPDEIPRLTSLANLFEPIYLHAAWQMVLENQRQILMSLEP 348 >UniRef50_A1WTL4 DNA polymerase III, subunits gamma and tau n=6 Tax=Gammaproteobacteria RepID=A1WTL4_HALHL Length = 554 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 237/553 (42%), Positives = 304/553 (54%), Gaps = 11/553 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ LARKWRP+ F DV GQEHVL ALAN L+ GR+HHAYLFSGTRGVGKT++AR+LAK Sbjct: 1 MTYQALARKWRPRRFEDVAGQEHVLRALANALADGRLHHAYLFSGTRGVGKTTVARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITA PCG CD+CRE++ GRFVDLIE+DAASRTKVEDTR+LLDNVQYAP RGRF Sbjct: 61 CLNCEHGITAEPCGTCDSCRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS HSFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQFHL+ L Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFHLRRLSS 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 IR +L + EE + + A LARAA+GSLRDALSL DQA+A G+G V+AM Sbjct: 181 TLIRDRLLALAEEEGVTVDAGAAARLARAADGSLRDALSLLDQALAFGEGAARDDEVAAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ L ++ A+ + +G ++ A +++ L E++ +H +A+ Q P+ Sbjct: 241 LGAIERRHVLEVLTALADGDGAALVTAARHMAEVAADFDEALAELVATVHSLALAQQVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+G+D R+ LA I D+QLYYQ + R++LPYAPD G EM LLR AF Sbjct: 301 AIGDDEPER-DRLLALAERIDAEDLQLYYQIGVNARRDLPYAPDPATGFEMALLRMHAFR 359 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 P + VA + A + Sbjct: 360 P----------AEGAPRVAAPTDGGRSGTDGGAPVAGGGGAQAGGGPAANASAGVAPPEP 409 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +A +E A A + L+ + A E A Sbjct: 410 AAPPPGEAVGAEGATDEDAVARWTQIVGGLSGPLRMIAAHCEWVGREGARVILRLDESHE 469 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +++E + T ++ A+ A + + L A Sbjct: 470 YLNNAERRERLQTALGEAFGETITLQIDIGPTRWTPAMAERQQAQERQAEAEQALAGDPA 529 Query: 541 LNAWKEESDNAVC 553 L E D + Sbjct: 530 LQGLCEAFDGQLH 542 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 7/193 (3%) Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 + A P + A + + Sbjct: 360 PAEGAPRVAAPTDGGRSGTDGGAPVAGGGGAQAGGGPAANASAGVAPPEPAAPPPGEAVG 419 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA-WKEESDNAVCLHLRSSQRHLNNRGAQ 569 A+ A + W V LS + +A + W V L L S +LNN + Sbjct: 420 AEGATDEDAVARWTQIVGGLS--GPLRMIAAHCEWVGREGARVILRLDESHEYLNNAERR 477 Query: 570 QKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRR 629 ++L AL G T+ L I P TP + +E+ A+A +++ D +Q L Sbjct: 478 ERLQTALGEAFGETITLQIDIG--PTRWTPAMAERQQAQERQAEAEQALAGDPALQGLCE 535 Query: 630 FFDAELDEESIRP 642 FD +L +RP Sbjct: 536 AFDGQL--HGVRP 546 >UniRef50_C7QXQ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=C7QXQ5_CYAP0 Length = 650 Score = 310 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 175/632 (27%), Positives = 274/632 (43%), Gaps = 18/632 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY+ L K+RPQTFAD+VGQE + T L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 3 SYEPLHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKS 62 Query: 62 LNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + TATPCG C+ CR I +G +D+IEIDAAS T V++ R++++ Q+AP + R Sbjct: 63 LNCLAFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCR 122 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + Sbjct: 123 YKVYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIP 182 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + + L I +E I AL L+A+ A G LRDA ++ G ++T V Sbjct: 183 LDAMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDA-ESLLDQLSLLSGTITTDKVWE 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + + L L++A+ N E V+ RG E +L + G + + + +P Sbjct: 242 LVGAVPEQDLLLLLQAIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAP 301 Query: 300 A--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A I Q L +L R+ +E+TLL L Sbjct: 302 NRPDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL----PETTSQVL 413 + P P + P P P + P P P Sbjct: 362 PSAFMKSEVTSQKSEVIPTPTPPLSPSPPPPSPHPPHTPPPPLTPSPPLSQNPVINDVNG 421 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 L ++Q ++ + R + VQ + A + Sbjct: 422 IWPAILAKLQPFSQGLVNSHCYFLNLEESAAYIGVRSQGLLKLVQGKIPDLEAAFAAVCQ 481 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHE--KTPELAAKLAAEAIERDPWAAQVSQLS 531 + V +P+ + + E + A+ + + Sbjct: 482 RPIKVHLKVASPSSNAVSTSPQPVNPSPSPVPISNSETEKPVIAQPVINSDKETISNTPK 541 Query: 532 LPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVED 591 N E ++L+ +L++ ++ + +G V+L + Sbjct: 542 TEIKAFSHKQNNLPESE-----INLKDISENLDDEDLKKVAENFAKIFEGEIVDLAPSFN 596 Query: 592 DNPAVRTPLEWRQAIYE--EKLAQARESIIAD 621 + Q I + +Q +SI D Sbjct: 597 SKIPSLSVGSEEQKIKHKTQPNSQLSDSIKLD 628 >UniRef50_C7RH57 DNA polymerase III, subunits gamma and tau n=3 Tax=Anaerococcus RepID=C7RH57_ANAPD Length = 626 Score = 310 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 202/378 (53%), Gaps = 1/378 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + L R++RP+TF +V+GQ+ V+ L N + HAY+F+G RG GKT+ A++ AK Sbjct: 1 MA-KALYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + +PC C+NC+ I+ +D+IE+DAAS +++D R+L DNV Y P + ++ Sbjct: 60 AINCLHPVDGSPCLECENCKAIDDESTIDIIEMDAASNRRIDDIRNLKDNVIYPPNKLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HM++R +FNALLK +EEPP H+ F+LATT+ +P TILSR F ++ Sbjct: 120 KVYIIDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDNIPNTILSRAQNFEFNKIEK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I+ Q+ IL ++ I E A+ L+ R A+G++RDALS+ DQ ++ V + Sbjct: 180 GKIKEQISIILKDKDIEMENEAIDLIIRKAKGAMRDALSILDQVLSYDTKSYKLADVENL 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D L ++ N ++ ++ I + ++ ++ I + ++S Sbjct: 240 LGVVDFYDIDKLTNSIFSFNQKKALSYIFSLRESNKSNKDIIDSLINYFRDIMLYKMSED 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 D +++ A I + L ++ + + + VE+ ++R + Sbjct: 300 PDLFDNEERFDFIKKRAGEIEIDRLLDLLDILNEYSAKIRLSDNTDLIVELMVIRLINSK 359 Query: 361 PRMPLPEPEVPRQSFAPV 378 L ++ Sbjct: 360 DVKSLDSRIRALEANNEK 377 >UniRef50_B2S4P2 DNA polymerase III, subunits gamma and tau n=2 Tax=Treponema pallidum RepID=B2S4P2_TREPS Length = 572 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 141/519 (27%), Positives = 234/519 (45%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQV A ++RPQ F V+GQ+ V+ L L ++ AYLFSG G GKTS AR+LAK Sbjct: 1 MAYQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C +CREI G +++IEID AS T V D R + + + + P R+ Sbjct: 61 ALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDEVHMLS +FNALLKT+EEPP +V F+ ATT+ ++P T+ SRC QFH + +D Sbjct: 121 KVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L + IA E L +AR + GS+RDA +L DQ + S G V+ + + Sbjct: 181 QTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKK 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + DD +L + + L++ + G+ E +++ + + + Sbjct: 241 LGLMTDDSLAALFSHCCRKDARAALELVDALVSSGVSVEQCVIDCVRYARALLLFTQGIT 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + T + I+ LL +++ ++ D R +E+ + R Sbjct: 301 NESLVGIAANQVPEYVRTTWNASQIERALGLLLQLFRDIRFSVDPRYELELAISRLAWLS 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + E V S + T + + P + Sbjct: 361 EYVSIQEVRVALDSVQQILDTHAVPGVCSASVGSDDGETGVVSPHGIRPPMSTSVCTVRA 420 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + ++ A + + E SV V+ S + + + + Y + Sbjct: 421 LQDALVEKLRASHQMLATALGSSYSWREEDTSVCMCVRTHYERSVISQHASLLKEYASEL 480 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + + ++ + + K A H + L ++ Sbjct: 481 LGREVCVRVLLDSVPSSKVAPSHLPQSPAPSALFTTSLL 519 >UniRef50_C7MHU5 DNA polymerase III, subunit gamma/tau n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MHU5_BRAFD Length = 1122 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 164/625 (26%), Positives = 257/625 (41%), Gaps = 37/625 (5%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP++FA+V+GQ+HV T L L GRI HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 4 ALYRRYRPESFAEVIGQDHVTTPLRRALRAGRIGHAYLFSGPRGCGKTTSARILARCLNC 63 Query: 65 ETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T PCG CD+CR++ G +D++EIDAAS V+D R+L + +AP R R+KV Sbjct: 64 VEGPTDVPCGQCDSCRDLANGGSGSLDVVEIDAASHGGVDDARELRERASFAPVRDRYKV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + + Sbjct: 124 FIIDEAHMVTSAGFNALLKLVEEPPEHVKFVFATTEPDKVIGTIRSRTHHYPFRLIPPQV 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 + LE + E + + L+ RA GS RD++S+ DQ +A +GD + A+L Sbjct: 184 LGPYLEEVCAAEQVQVGEGVMPLVVRAGGGSARDSMSVLDQLMAGAGDDGLDFPTAIALL 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D + A+ E + + + A G E + ++L + + ++ P Sbjct: 244 GFTDTALLDRAITAVAERDAASLYGAVEHVLATGHEPRRFVEDLLERMRDLIVLSAVPDK 303 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L A MR A P D+ L + + A R+ +E+ R + Sbjct: 304 GTDLLPQVPADELEAMRGQAALFAPADLSLCGDLVHETLSTMSGATSPRLHLELLAARLV 363 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 R L + P + AP P + E + Sbjct: 364 LRDERAALAAADGPAPAADRRAPAPAGPGAPARPAEAQGAPGGASGAREEARRIAQEKVE 423 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ +G E A P +A + + P AP + Sbjct: 424 AARQARGGRGQAAPEQRDRQGAPPAASAPAAQAPAPQAPAAQHSAPEPAAPAPEQPAPAG 483 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPE-------------------------LAAK 512 Q A A + P AA Sbjct: 484 PAQPAGPGQAPGSAAPAPAAHAPGSAAQPPAGDASAPPASGPPASAPAAPGPSAPAPAAG 543 Query: 513 LAAEAIERDPWAAQVSQLSLPKLVEQVALNA---WKEESDNAVCLHLRSS--QRHLNNRG 567 R W+A + +L + ++ + + + R+ + Sbjct: 544 GLDADEVRGHWSAILDELQQIRRPSWALISQNGTVNGAHGSTLVIGFRTEGLVNAFHRGT 603 Query: 568 AQQKLAEALSMLKGSTVELTIVEDD 592 A Q LA+A+ + + V + V + Sbjct: 604 AAQNLADAVRRIMHTEVTIEAVVGE 628 >UniRef50_B0S0K6 DNA polymerase III subunits gamma and tau n=2 Tax=Finegoldia magna RepID=B0S0K6_FINM2 Length = 537 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 118/417 (28%), Positives = 220/417 (52%), Gaps = 1/417 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q + RK+RP TF V GQ+H+ L N + I HAY+FSG+RG GKTS A++ A+ +N Sbjct: 2 QAIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAIN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C+NC+ + +D++E+DAAS +++D R+L D V Y P + ++KVY Sbjct: 62 CLDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HM++ FNALLK +EEPP+H+ F+LATT+ K+P TILSRC ++ K ++ + I Sbjct: 122 IIDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +++ILN+ + + A++L+A A+G++RDALS+ DQ ++ ++ Q ++ +LG Sbjct: 182 SDNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGI 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D+ LV ++++ + V+ + + E ++ E+L + + + + Sbjct: 242 VDNKGIFKLVNSIIKKDATDVLGNLYTI-SHNKPVENVMDELLNHFRNLLLSKNGLEKIR 300 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + I I ++ +K+L A +++ +E+ ++R + + Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRLIDYIDYD 360 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 L + + + + + + + +S+ A + +L Sbjct: 361 DLIARVNTLEDKLNNIEQNGIKINSTKELSEFDEKIDKKIEISQKSSKKEAKQDELS 417 >UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0W5_SYNWW Length = 499 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 135/397 (34%), Positives = 212/397 (53%), Gaps = 3/397 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y L R WRP+ FA+VVGQE +TAL N + G++ HAYLFSG RG GKTSIA+++AK Sbjct: 1 MAYLALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C++I G F+D+IEIDAAS +++ RDL + V+ PA+G+ Sbjct: 61 AVNCENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKN 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ +FNALLKT+EEPP+ V F+LATT+ K+P TI SRC ++ + L Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLTT 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 +I +L + + I EP AL LLAR A G +RDALS+ DQ + +S Q V Sbjct: 181 AEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSYKGNNSISKQDVLE 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G +DD L+ A++ + ++ ++ A ++G E + L E L + ++ Sbjct: 241 VMGLVDDAFMAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAREASMFLRDFLLYLVAG 300 Query: 300 AALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + I ++ + ++ +L ++ ++ +E+ + Sbjct: 301 KEADLVVAGEESQAFFEQQKSQINMQNLLRALRIMMDTADKLRFSEGQKYLLEIAFMEIA 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQ 394 +P + + Q Sbjct: 361 TLFSEEKSAQPSFLEEKKPKKKADPRAKASSNEAQDA 397 >UniRef50_B3DUB5 DNA polymerase III gamma/tau subunit n=5 Tax=Bifidobacterium RepID=B3DUB5_BIFLD Length = 960 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 155/629 (24%), Positives = 272/629 (43%), Gaps = 32/629 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ+ V L L G++ HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC G T+ PCG C++C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CVNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM+++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + LE I ++E I EP L+L RA GS+RD LS+ DQ + +G ++ A Sbjct: 180 PQEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A+LG + V+A+++ NGE + +I + G + + ++L + + ++ L Sbjct: 240 VALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTL 299 Query: 298 SPAALGNDMAAIEL-----RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++ + A+ + + + + A RM Sbjct: 300 AGDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRM----- 354 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 L L E + AP ++ M P ++ S+ Sbjct: 355 ---RLELLAARLLAGSESGFATAAPAPASSGMPPAAASSTSTTSAASGTGASGFAGASRG 411 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 A GA + +++ +T + D +P + Sbjct: 412 GFAGASHGGFSGAARNQQAAAPQSTASHESVGGNGPVSDRPADSPSVQPAVATAAAGAGW 471 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSL 532 A + +++ + + + + E + RD + Sbjct: 472 GAPAASPAVPAQPVASPAASDNRSIDE--KWDAAVAALPETIREYVSRDKVPTVKFGPNR 529 Query: 533 PKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-------STVE 585 L +++ K S +A L + +S + A + +A+ G S V Sbjct: 530 KGLP-CLSMTFDKSLSQHAFALAVDNS-----GKKAAAVVMDAVRNEFGANAVIAPSAVA 583 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 ++ +P + + + +A+A Sbjct: 584 ANGERVESVKRMSPEQLAKVKQQIAMAKA 612 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 308 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 131/394 (33%), Positives = 209/394 (53%), Gaps = 18/394 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL RK+RP+TF++VV Q+HV A+ + + H Y+F+G RG GKT++AR+LAK LN Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C CREI++G F+D+IE+DAAS +++ R + D V Y P G++KVY Sbjct: 62 CENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP HV F+LATT+ +K+P TI+SRC F + + E I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + E I + AL +A+ A G LRDAL++ +Q +G++ + V LG Sbjct: 182 EKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIDLETVHRALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + V A+ + +RV ++++ G ++E L+ E + L Sbjct: 242 IPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQE-------------AVEDLV 288 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 D+ + DI + LL +E+ +A ++R+ ++ Sbjct: 289 EDLERERGVY-----QVSANDIVQVSRQLLNLLREIKFAEEKRLVCKVGSAYIATRFSTT 343 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 + E +V ++ V + + Sbjct: 344 NVQENDVREKNDNSNVQQKEEKKESVKAKEEKQE 377 >UniRef50_A2BZ44 DNA polymerase, gamma and tau subunits n=7 Tax=Prochlorococcus marinus RepID=A2BZ44_PROM5 Length = 595 Score = 308 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 153/639 (23%), Positives = 277/639 (43%), Gaps = 55/639 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ +K+RP ++VGQE + L L +I AYLF+G RG GKTS AR+ AK L Sbjct: 5 HKPFHQKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSL 64 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TA PCG C+ C++I G +D+IEIDAAS T V++ R+++D ++ P + R+ Sbjct: 65 NCLSCEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARW 124 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS + NALLKT+EEPPE V F+LATT+P+++ TI SRC +F K + Sbjct: 125 KVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISS 184 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I H L I N+E I E +AL+L+A+ + G +RDA SL DQ +G V+T+ V + Sbjct: 185 NTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNG-VTTKNVQNL 243 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM--VQLS 298 LG + ++ ++L+ A++ E ++ N+ G E +LV +L + + + + + Sbjct: 244 LGEVSENDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKTLNNN 303 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + + ++ I I ++ L ++ + + ++ +E+ L + Sbjct: 304 YSDIFYTSIDFQNELNKFSKNISKMRIIDWHNKLKNIDYQIKTSDNPKLWLEVHLTSLIE 363 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + ++A Q Sbjct: 364 NKIEDNIVNNGQSNKETLNQKVINKDELINKTIISKNANQ-------------------- 403 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 T+++ + + + ++ + + + + + P + A + Sbjct: 404 -------TESEDINKKELINNQDIQPNYENANQTESEDINKKELINNQDIQPNYEHANQT 456 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + + L + W + + Sbjct: 457 DFLKEKWELILSKLELPSTRMLLSQQAELASIDSNEVLIALSPNWENMIKSRKI------ 510 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + NA K+ + V L+ S + ++NN Q + + + I + T Sbjct: 511 IIENAVKKVCGDKVKLNFSSKKININNTAKSQ--EKIIKKSTSNR---EIQNTNFQNSNT 565 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 P+E Q + D+N + L FF+ E+ + Sbjct: 566 PIEKPQKEFY------------DDNSKNLANFFNGEIID 592 >UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ66_ALIAD Length = 586 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 160/571 (28%), Positives = 255/571 (44%), Gaps = 15/571 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RPQTF D+VGQ HV L N L G++ HAYLF G RG GKTS A+LLAK Sbjct: 1 MAYQALYRAYRPQTFEDLVGQPHVRQTLTNALKSGQLAHAYLFCGPRGTGKTSTAKLLAK 60 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C+ C I++G VD+ EIDAAS V++ RDL D+V Y P + Sbjct: 61 AVNCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAK 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY++DEVHML+ +FNALLKTLEEPP HV F+LATT+P +LP TI+SRC +F + + Sbjct: 121 KKVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISRCQRFDFRRIA 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E I +L + + I AL LA AA+G LRDAL+L +QA A G+G++ V+ Sbjct: 181 PEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTVAD 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G++D ++LV + + M + A G + ++ ++L ++ + +V+LS Sbjct: 241 VVGSVDIGSLVALVGDLAGRSFLSAMDRLGRWYASGKDASRIVHDLLQVVRDLFIVKLSQ 300 Query: 300 AALGNDMAAIELRMRELART--IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + ++ + +A + + + L +L Y + R+ +E L+ Sbjct: 301 SPDALAGKPVDP-YQPVASRDDVTVDWLLAAMRKLGELYTQLRYVEEPRLALEAVLMGLA 359 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A +P + A P A +V Sbjct: 360 AERRSKDDVDPAGSIEPARTGAAARREGRPPEQPAQADADLPVQASAPAPPAPEVAQGDP 419 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + ++ + R + V ++++ + A+ Sbjct: 420 DAREAVTRSAPARAAAHRKRETLARLYRDRDEALEARLREMWQDVLASVKAKRVQTHAWL 479 Query: 478 WKATTPVMQQKE-----------VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + + A + A+E L + AI + W Sbjct: 480 LHGEVALATPRAVVLSFKSRIHREAVMKPADRAAIEAALAEALGQPVHLFAILQADWEEF 539 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLR 557 + L+ E + + S + V L + Sbjct: 540 AASLAPALAEEAGSREDGEAPSTDVVQLAID 570 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 127/437 (29%), Positives = 210/437 (48%), Gaps = 24/437 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F D+VGQEH+ L N L L +I+HAY+F+G RG GKT+ AR+LAK LN Sbjct: 2 EALYRKYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE PC C +C+ I+ G +D+IE+DAAS +++ R + + V + P G++KVY Sbjct: 62 CEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGKYKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+R +FNALLKTLEEPP+H+ F+LATT+P+K+P TI+SRC + + E I Sbjct: 122 IIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L+ + +E AL+ +A+ AEG LRDALS +Q I G+V+ + V LG Sbjct: 182 ISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYTGGEVTEKIVDEALGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ +EA + + E + ++N+ +++ + +++ Sbjct: 242 ISEETIEKFIEATLNNDRELIEKILNDIYIERGDFDTFINQLIE---------------- 285 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + E M +LA + + ++L R+ R + + Sbjct: 286 KTLEKKEDNMLKLASDF-----YNVLKEIRFAEEKL---LIARLMFLSIANRYHGKYSNI 337 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 Q+ + +P + +Q Sbjct: 338 SNVASTARSSQDNVGTKQLSKNIQDEKITEQNENTLPQSEKMPSAQLNESVKNEDIQVDL 397 Query: 424 GATKAKKSEPAAATRAR 440 + ++ + Sbjct: 398 KREEKEEKHLSQNVSQA 414 >UniRef50_C0VRL5 DNA polymerase III subunits gamma and tau n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRL5_9CORY Length = 829 Score = 307 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 151/643 (23%), Positives = 259/643 (40%), Gaps = 49/643 (7%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L K+RP TFA+V GQEHV L+ L G I HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYHKYRPATFAEVRGQEHVTRPLSVALDSGNIGHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E G T+TPCG CD+CR + G +D+ E+DAAS V+D R+L ++ +AP+ R+++ Sbjct: 62 EHGPTSTPCGECDSCRALAPGGTGNLDVTELDAASHGSVDDMRELRESAVFAPSESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIIDEAHMITPQGANALLKIVEEPPEHLVFIFATTEPEKIIGTIRSRVQHYPFRLLTPPV 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAM 240 +R L+ + E + E + RA GS RD LS+ DQ +A ++S + + + Sbjct: 182 MRGLLQDVCAGEGVEVEDSVFTPVIRAGGGSPRDTLSILDQLLAGVPAGEKLSYELAAPL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D S V + + +L+ + RGI+ + ++L + ++Q P Sbjct: 242 LGVTDSTLLDSAVRVIATHDAPGAFSLVGQVIDRGIDPKRFTSDLLDRFRDLMVLQAVPD 301 Query: 301 ALGNDMAAI----ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 AL + + + E + + + G +++ R+ +E+ + R Sbjct: 302 ALSSGLVDAPSLLHSELTEEVQLFSGQGLPQITALVNTGLEDMRGTLAPRILLEVLMARL 361 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTP------------------------------ 386 L+ P+ +P + AP AP V Sbjct: 362 LSVGTGAPVIDPASSPAALAPPAPEQVSEAGKKYLRRSQRPAAQPQAQQPVQPQQPAQPQ 421 Query: 387 -----TQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 + P Q+ P + RQ + Q + ++ A + Sbjct: 422 SQQPVQRPAQPQAQQPTQSQQQSAPSAPVEEKQPRQYQEYGQPSQPVQRPAQPQAQQPVQ 481 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 + + + + + + V + ++ + Sbjct: 482 PQAQQPVQPQQQSAPSAPVEEKQPRQYQEYGQPSQPEQEEHEVPEPRQQWEAGHDEQPQQ 541 Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVS---QLSLPKLVEQVALNA-WKEESDNAVCLHLR 557 E R W ++ + + A + D + L + Sbjct: 542 VESAPQEPETSTVDVETVRAKWVDILNYISREKKNTTARILLRGATLLDVRDGTLYLGIL 601 Query: 558 SS--QRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 + LN+ + +A+ +++ + V + T Sbjct: 602 TGAIANRLNDAKHNADIVDAVMAETNASLAVECVLGNKIPAST 644 >UniRef50_B9L692 DNA polymerase III, subunits gamma and tau n=1 Tax=Nautilia profundicola AmH RepID=B9L692_NAUPA Length = 493 Score = 307 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 131/391 (33%), Positives = 214/391 (54%), Gaps = 24/391 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L RI HAYLFSG RG GKT+ AR+ AK L C Sbjct: 2 VLALKYRPKRFEEIIGQDAIVKTLVNSLDKNRIAHAYLFSGLRGAGKTTTARIFAKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + G T+ PC C+NC + R +D+IE+DAAS K+ED R+L+++ +Y P+ G++K+++ Sbjct: 62 DHGPTSNPCEECENCIMANESRHIDIIEMDAASNRKIEDIRELIEHTKYKPSVGKYKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIKNGIIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 + L IL E++ + AL+L+ +AA+GS+RD+L+L DQAIA G++ +V MLG + Sbjct: 182 NYLIKILAIENVEFDEEALRLIIKAAKGSVRDSLTLLDQAIAFSKGKIDLDSVVDMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + +A+ ++ +R+ ++ E + E+++ E++ L Sbjct: 242 NPEIINEIFDAVKNSDKKRIKEIVGEIKDY--DIESIIDEVIIYLKDAL----------- 288 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 ++P +Q ++ + ++ + Y D + + LR Sbjct: 289 -----------FEGSLPLITVQRFFNIVADVKELIKYNTDNEFVLTLMFLRMSEAVKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + + + + + Sbjct: 338 IDDLIKSFEQKIDLNTYKPKEEPVKIQKSPE 368 >UniRef50_B0RIG8 DNA polymerase III subunit gamma n=5 Tax=Actinobacteria (class) RepID=B0RIG8_CLAMS Length = 837 Score = 307 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 151/612 (24%), Positives = 241/612 (39%), Gaps = 51/612 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L R++RP+ FA+++GQ V L L R++HAYLFSG RG GKT+ AR+LA+ LNC Sbjct: 11 ALYRRYRPENFAELIGQTQVTDPLRTALRTNRVNHAYLFSGPRGCGKTTSARILARCLNC 70 Query: 65 ETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T TPCGVC +C E+ + +D++EIDAAS V+D RD+ + +APAR R+K+ Sbjct: 71 AEGPTDTPCGVCPSCVELSRDGSGSLDVVEIDAASHNGVDDARDIRERAVFAPARDRYKI 130 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEHVKF+ ATT+P K+ TI SR + + + Q Sbjct: 131 FILDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPDKVIGTIRSRTHHYPFRLVPPAQ 190 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAML 241 + +EH+ EE + P L L+ RA GS+RD LSL DQ IA + + V + A+L Sbjct: 191 MLDYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQLIAGSEDESVEYERAVALL 250 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--- 298 G +++A+ + A ++ G + + ++L L + +V + Sbjct: 251 GYTHAALLDEVIDAIARHDAAAAFAGVDRVIQTGQDPRRFVEDLLERLRDLIIVGATSVE 310 Query: 299 --PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A L RMR A ++ + E+ A R+ +E+ + R Sbjct: 311 GAAAVLRGTPEDELERMRAQAVAFGAVELSRAADVVNAALTEMTGATSPRLHLELLVARV 370 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 L + A P P +A A + + Sbjct: 371 LVPASDDTHRGALARVERLERRVGVADAGADPAPATPVAAAAPAAAPAPASAPAPAATSA 430 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 T + Sbjct: 431 PVAAPDPAPTPDPAPAAKSTETGATT---------------------------------- 456 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 + A + + + A P RD W + V + K Sbjct: 457 QTPAASAPDESSPSSSGTGAPAAEAPSAPAPTAPVGPVTFEQLRDSWPSVVEAVEKAKRS 516 Query: 537 EQVAL--NAWKEESDNAVCLHLRSSQRHLNNRGA-------QQKLAEALSMLKGSTVELT 587 + + +D+ + L S+ + L A+ + G V+ Sbjct: 517 AWLVAVTATPRALTDDVLTLSFVSANDAERFKERGAPGQGVSDILRTAILDVLGIRVKFI 576 Query: 588 IVEDDNPAVRTP 599 + + P Sbjct: 577 ARVEPHGGSAAP 588 >UniRef50_Q609A7 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q609A7_METCA Length = 547 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 241/528 (45%), Positives = 315/528 (59%), Gaps = 14/528 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M YQ LARKWRP F +VVGQEHV+ AL + L GR+HHAYLF+GTRGVGKT++AR+LAK Sbjct: 1 MLYQALARKWRPHNFTEVVGQEHVVKALTHALEAGRMHHAYLFTGTRGVGKTTLARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE A PCG C CRE+++GRF+DLIE+DAASRTKVEDTRDLLDNVQYAP +GR+ Sbjct: 61 ALNCEDRQGANPCGRCLICREVDEGRFIDLIEVDAASRTKVEDTRDLLDNVQYAPNQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS HSFNALLKTLEEPP HVKFLLATTDPQK+PVT+LSRCLQF+LK L Sbjct: 121 KVYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKIPVTVLSRCLQFNLKRLTP 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQIR Q+ IL E I EP A + LARAA+GS+RD LSL DQAIA G+++ VSAM Sbjct: 181 EQIRAQMAQILASESIDFEPAATKALARAAQGSMRDGLSLLDQAIAHCGGRLTNTGVSAM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LGT+ + +EA+ E+ + ++A+ A +++ ++ ++L +LH+IA+ Q +P Sbjct: 241 LGTVSREPVYGALEALAESRADELLAVSATLAEFSPDYQDVVQQLLAILHQIAIAQFAPD 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ D R+ LAR + P D QLYYQ L G+K+L APD R G EM LLR LAF Sbjct: 301 AIRQD--DEAERVLTLARCLTPEDTQLYYQIALQGQKDLQLAPDPRDGFEMLLLRMLAFR 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE---------TTSQ 411 P P + + AP T + P + + +QAP E TTS Sbjct: 359 PHSAEAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQAPPPAAAEASSSGASPWTTSD 418 Query: 412 VLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPA 471 L + ++ ++ A ++ R + L Q A Sbjct: 419 ALNWPRMIEAMRLAGMTRQLASHCVLRTLTEHACELALDPRQ---AQIHTPTVTSNLETA 475 Query: 472 KKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 ++ + + TP A + + E+ E ++ +A Sbjct: 476 LQKLLGRPIKLTIRCESLDAETPAAADQRAQIERQREAELEIENDATV 523 Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 6/192 (3%) Query: 453 VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAK 512 A P + A A + V A E + Sbjct: 356 AFRPHSAEAAPRIVPTAAAPAMRAPSDTGIREPHRAREVTRQAPPPAAAEASSSGASPWT 415 Query: 513 LAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQK 571 + W + + L + Q+A + +++A L L Q ++ Sbjct: 416 TSDALN----WPRMIEAMRLAGMTRQLASHCVLRTLTEHACELALDPRQAQIHTPTVTSN 471 Query: 572 LAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 L AL L G ++LTI ++ TP Q E+ +A I D + L+ F Sbjct: 472 LETALQKLLGRPIKLTIR-CESLDAETPAAADQRAQIERQREAELEIENDATVHALKDMF 530 Query: 632 DAELDEESIRPI 643 A++ S RP+ Sbjct: 531 GAQIVAGSTRPL 542 >UniRef50_P63976 DNA polymerase III subunit gamma/tau n=18 Tax=Actinomycetales RepID=DPO3X_MYCBO Length = 578 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 150/553 (27%), Positives = 230/553 (41%), Gaps = 8/553 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +FA+VVGQEHV L+ L GRI+HAYLFSG RG GKTS AR+LA+ LNC Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G TA PCGVC++C + +D++E+DAAS V+DTR+L D YAP + R++V Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM++ FNALLK +EEPPEH+ F+ ATT+P+K+ TI SR + + L Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R L I +E + + L+ RA GS RD LS+ DQ +A + D V+ +L Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G D V+A+ + + I G + ++L + ++Q P A Sbjct: 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + RMRE A I + Y + + G E+ A R+ +E+ R L Sbjct: 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP-PQPQSAPQQAPTVPLPETTSQVLAAR 416 + ++ P VP P +A + P A Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPAS 421 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + R+R + + A E Sbjct: 422 SEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQR 481 Query: 477 RWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV 536 ++ V + + + A + + Sbjct: 482 NADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEE 541 Query: 537 EQVALNAWKEESD 549 +A + S Sbjct: 542 HMLAEAGRGDPSP 554 >UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=Streptococcaceae RepID=Q1JL73_STRPC Length = 561 Score = 305 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 146/489 (29%), Positives = 221/489 (45%), Gaps = 12/489 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEP E+V F+LATT+ K+P TILSR +F KA+ + Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQKA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML 241 IR L +L++E +A+E AL L+AR AEG +RDALS+ DQA++ D QV+ + Sbjct: 182 IREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSPDNQVTIAIAEEIT 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G++ V + + + +A + G ++L L + +V+ Sbjct: 242 GSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGDN 301 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR-----A 356 ++ I + E+ R+ EM ++ Sbjct: 302 QRQSAVFDTNL------SLSIDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQLAKEEG 355 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 +A + + S P P+ T+ + Sbjct: 356 VALPSGLSSDVTTEVEGLKRELNQLKQALAQLQASPSPSHAPVKPAQAKPKLTTYKIDRV 415 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + L+ ++ + + + N L+ +++ + P A Sbjct: 416 KILKIMEETVQDSQQSRQYLDALKTAWNEILDSISAQDRALLMGSEPVLANSENAILAFE 475 Query: 477 RWKATTPVM 485 M Sbjct: 476 AAFNAEQAM 484 >UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 Tax=Verrucomicrobia RepID=B1ZQU6_OPITP Length = 395 Score = 305 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 147/401 (36%), Positives = 209/401 (52%), Gaps = 12/401 (2%) Query: 1 MS---YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS YQV+ARKWRPQTF DVVGQ+HV+ L N ++ RI HAYLF G RG GKTS AR+ Sbjct: 1 MSSTGYQVIARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARI 60 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 AK LNC G A C+ I +G +D+IEID AS V+ RDL D VQYAPA+ Sbjct: 61 FAKALNCTDGPKADFDPNDPACKAIAEGSHLDVIEIDGASNNGVDQVRDLRDTVQYAPAQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATTDPQK+ TI+SRC +F LK Sbjct: 121 GRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQRFDLKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I +L+ I E I AL+ +AR A+G +RDA S+ DQ I+ +S V Sbjct: 181 IPPDLIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCGTDISEADV 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G + ++ L A+ + +++A++++ G + LL ++ + + + Sbjct: 241 LDVYGLVSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQAFVRAALLDAI 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + + L G + ++ E+TLL+A+ Sbjct: 301 AQGGRSAKLGGEP---------MTTEQLTRMLDALREGEGAVKLGLAEKINFEVTLLKAV 351 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ 398 + + A P + Sbjct: 352 DASRSRAIDSLIKELAALAEETPATEAGAQGSGDPDLQNEK 392 >UniRef50_B8J3Z5 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3Z5_DESDA Length = 741 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 164/616 (26%), Positives = 250/616 (40%), Gaps = 10/616 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + LA ++RPQTFA V GQ+ V L+ + R AYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKHLSLASRYRPQTFAQVAGQDMVKAVLSRAAAEDRPAAAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE PC C CR+I QG VD+ EID AS VED R L + + YA GR+ Sbjct: 61 ALNCEHSPGPEPCNECAQCRKITQGVHVDVTEIDGASNNSVEDARSLRETIGYAAMEGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV++IDE HML+R++FNALLKTLEEPPE V F+ ATT+ K PVTI+SRC F + L Sbjct: 121 KVFIIDEAHMLTRNAFNALLKTLEEPPERVVFIFATTEAHKFPVTIVSRCQHFVFRHLSK 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L +L +E++ E A++LLAR A GS+RD++SL DQ +A G Q++ A + Sbjct: 181 DALVEHLSGVLRKENVTFEDSAVRLLARRAAGSVRDSMSLLDQTLALGGEQLTAAATRQV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + L EA+ + V L + +G++ + E+ G L + +++ A Sbjct: 241 LGLAGQEMFAELFEALHAQDCPAVAGLCRQILQQGVDIGFFVRELAGNLRNLFLLRQGGA 300 Query: 301 AL---GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 A+ A + LA + +Q L ++ + +P+ +E+ LL Sbjct: 301 AVASSLQLPADEAALWQGLAPRFSTAHLHAAWQMTLDAQRGIVQSPEPAAALELLLLNLA 360 Query: 358 AFHPRM---PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + ++P A P+ P S+ + A Sbjct: 361 LLPQLLPVGQVTPDQMPAGPPGAAPADANQPPSGSTSGPASSMPHGGYRSGQPPHAGAEA 420 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 AR A A +AA A + P P+ ++ Sbjct: 421 ARHNAGTPDDAPAASGMGKSAARPRATTTAARPTTDGEEAETPDPAPACDHSRNQPSGQD 480 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + + + +A + Sbjct: 481 ENLTRGQNSPHSNQGRHPDKSHTSDQRDVRAEGRTTPPYSAHRRAPGNGFSTPPDAPQDG 540 Query: 535 LVEQVALNAWKEES-DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 Q D A + + ++ T D + Sbjct: 541 APAQTPHTEAPGPDMDGAPWTGQDEDYAPYEDDALTESP---VAQNWPGRRNATRRTDSS 597 Query: 594 PAVRTPLEWRQAIYEE 609 T + R ++ Sbjct: 598 GQSATGQDRRDRQTQQ 613 >UniRef50_A9AUW8 DNA polymerase III, subunits gamma and tau n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUW8_HERA2 Length = 575 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 174/638 (27%), Positives = 274/638 (42%), Gaps = 72/638 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RKWR QTF D+VGQ H++ AL N ++ RI HAYLF+G RGVGKTS AR+L+K Sbjct: 1 MSSQALYRKWRSQTFDDLVGQSHIVQALRNAIAANRIGHAYLFTGPRGVGKTSAARILSK 60 Query: 61 GLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NCE PCG C CR I +GR VD+IE+DAAS T V+D R++++ VQ+ P + R Sbjct: 61 AVNCEQSDPRLRPCGECSTCRAIAEGRAVDVIEMDAASHTSVDDAREIIEKVQFRPTQFR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHMLS +FNALLKTLEEPP+H F+LATT+ K+P TILSRC +F Sbjct: 121 KKVYVIDEVHMLSTAAFNALLKTLEEPPDHAMFILATTEFHKVPATILSRCQRFVFNRHT 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + LE + EE + EP + +ARAA GS+RDA+S+ DQ + G+ Q+ V + Sbjct: 181 IANTIAHLEWVAGEEGVFLEPGVAEAVARAATGSMRDAMSILDQLMGYGEPQIPLTRVQS 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +LG + +LV A + +++IN A +G + +++ L + +++ Sbjct: 241 LLGATASREVETLVAAFAAEDVAAALSVINTIADQGADLRQFTRDVVSYLRGLMLLKSGG 300 Query: 300 AALGN-DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 AA + M+ ++ + I + + +L P ++ +EM ++ AL Sbjct: 301 AADLLDVGHDVLATMQSHSQQLALAAILAWLKIFSGLDHQLRTTPYGQLPLEMAVVEALV 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P R + AP+ + P P P + Sbjct: 361 VPVPAAVAAPSPVRGTVAPITR-------------PNPAVARPAEPAPVQRQTPTPSVVT 407 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + V+ + + A A + + A +A + Sbjct: 408 PRPVEQPVVEQPPQAEPTPVPVAAVAAQPMPEAEQHIVLAESEILLAEVEAVWLQVIEDL 467 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 K P +Q P AL+ TP + + Sbjct: 468 KPYNPRLQAVLKSCEPLALEDNTLVIGTPSPFHTKQLDDQTQ------------------ 509 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 ++ + + L+ + + + Sbjct: 510 ------------------------------RRLIEDLLAKAVNRQMFVR---GEEANRD- 535 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + + RE I+ D+ ++ R FDA + Sbjct: 536 ---QQNRARDARRQ--REEIMKDHVVKAARNIFDARIV 568 >UniRef50_A4GJ98 DNA polymerase III subunits gamma/tau n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJ98_9BACT Length = 539 Score = 305 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 175/420 (41%), Positives = 254/420 (60%), Gaps = 9/420 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARK+RP +F++VVGQEHVL AL N +S ++H AY+FSGTRGVGKT+IAR+ +K Sbjct: 1 MSYQVLARKYRPSSFSEVVGQEHVLKALENSISQNKLHQAYIFSGTRGVGKTTIARVFSK 60 Query: 61 GLNCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC C C C EI+ GR ++ +E+DAASRT V+D R+LLD+VQY PA Sbjct: 61 CLNCMQADSPQVISCDKCSACEEIKIGRHMEFLEVDAASRTGVDDMRELLDSVQYKPANA 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+YLIDEVHMLS+ SFNALLKTLEEPP HV FL+ATT+ +K+P T+LSRCLQ +LK + Sbjct: 121 RFKIYLIDEVHMLSKSSFNALLKTLEEPPPHVMFLMATTEVEKVPKTVLSRCLQLNLKVI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +I+ L+ +L+ E I ++ ++ L+A +A+GS+RD L+L DQAIA G+G ++ V Sbjct: 181 PEAKIQLHLKSLLDLESIEYDEESIALIADSAQGSVRDGLTLLDQAIAHGNGSLNADDVK 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 A+LGT+D + LVE +V NG+ +++ +E+E +L ++ + H+I++ Q Sbjct: 241 ALLGTIDQSYIIELVEHVVAGNGDGAYNALHKITELNVEYEQVLKILISVFHKISLHQQ- 299 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ LA + P QL+Y+ L + P + +E+ +LR LA Sbjct: 300 ------LHNNDSESIQRLAENLDPQITQLHYEIALNSLGKFHVHPHPKQALELCILRMLA 353 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 F P + P +++ + V QP S + V E T + Sbjct: 354 FQPMGDVVTPRQEKKNLKISSTPQVEIKKTDTEQPASEVIHSKIVSENEQTITKESNPSS 413 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 2/164 (1%) Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 + + + + + E + + +++ W + L L V QV Sbjct: 376 PQVEIKKTDTEQPASEVIHSKIVSENEQTITKESNPSSLDLRSWNSMFDSLELSMFVRQV 435 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 + + +S G + + +++S G + L I D + +P Sbjct: 436 FSEFEFISFVDKTLVLKKSDDLINPTEGLKTEFIDSISARLGYKISLVIESGDV--IASP 493 Query: 600 LEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 + EE+L + S++ + ++ + FD ++ +ESI + Sbjct: 494 AVMHEQEAEEQLNLDKSSLLENPVLKDILDSFDGKIIDESISKV 537 >UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococcales RepID=A9GQB3_SORC5 Length = 829 Score = 305 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 173/519 (33%), Positives = 248/519 (47%), Gaps = 12/519 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLARKWRPQ+F D+VGQEHV T LAN ++ R+ HA+LF+G RGVGKT+ AR+LAK Sbjct: 37 MSYVVLARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAK 96 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC G TATPC C C EI G VD+ EID AS V++ R L +++ Y PAR RF Sbjct: 97 ALNCVHGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDEVRKLQESLPYRPARDRF 156 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K++++DEVHMLS ++NA LKTLEEPP HVKF+ ATT+ K+PVTILSRC ++ K + Sbjct: 157 KIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRCQRYDFKLIGA 216 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQAV 237 + I +L +L++E I + AL LAR A GS+RDA+SL DQ IA +++ + V Sbjct: 217 QAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEGV 276 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + +LG D L A+V+ + + ++ E A G + + + L L + + ++ Sbjct: 277 AKVLGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAKV 336 Query: 298 S--PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 PA L + R LA D+ +Q ++ + R EM L+R Sbjct: 337 CEDPAPLLDLADEEVADTRALAARADADDLTRLHQGFSRAFDDIARSGQPRASFEMALVR 396 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAP-------TAVMTPTQVPPQPQSAPQQAPTVPLPET 408 P +P+ E P + P +P + A Sbjct: 397 LARRPPLLPIDELLRRLGDLERRLNGGGGGGGGGGGAPERGPQRPGAPSSGAAAPRRGAA 456 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 +++ A A+ ++ AA A N A A+ T ++ Sbjct: 457 SAEAAPEDAHASGAAAAGAARANDAAAFHGAPAANGVARANGAAATGAPANGVAFASGAA 516 Query: 469 APAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTP 507 A V A P Sbjct: 517 GAGGAGRPTGAAANGVAVTGAAANGVARANGAAAVYGAP 555 Score = 66.2 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 64/264 (24%), Gaps = 6/264 (2%) Query: 378 VAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAAT 437 + + T A A+ A A Sbjct: 554 APGGSGVARAHGGMAANGGVVAGGTSAANVVPFVNGAPGVHGAATSFASGGAAPAFAKAP 613 Query: 438 RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKAL 497 A R S + S + AP ++ + A Sbjct: 614 PYASGAVAPAYRADSAPPPSPRGALYSVPQSAPQFVAPGSAPRSSAPPSAQGPAPASSAP 673 Query: 498 KKALEHEKTPELAAKLAAEAIERDPWAAQVS--QLSLPKLVEQVALNAWKEESDNAVCLH 555 A A A + W A ++ ++ P L + A E + V L Sbjct: 674 PSAQNPAPASSAPPPPAMSAEDLATWRAVIAAVRVQRPALASVLEHAAVLELTPTRVALG 733 Query: 556 LRSSQ---RHLNNRGAQQKLAEALSMLKGSTVELTIV-EDDNPAVRTPLEWRQAIYEEKL 611 ++ ++ LA L G+ EL A + + A + ++ Sbjct: 734 YEANSFLSGQATEPASRDLLARVLGAHFGAPAELVFETITRGSAGPSLAQVETAERKARV 793 Query: 612 AQARESIIADNNIQTLRRFFDAEL 635 A+ ++ + AEL Sbjct: 794 EAAKRAVADHPLVTAAIELLGAEL 817 >UniRef50_A6NU34 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NU34_9BACE Length = 596 Score = 304 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 169/599 (28%), Positives = 252/599 (42%), Gaps = 50/599 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RKWRP++F DVVGQ H+ L ++ GR+ HAYLF+GTRG GKT+ A++LA+ + Sbjct: 2 YQALYRKWRPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C IE G +D++E+DAAS V+ R L D Y PA R +V Sbjct: 62 NCEHPVDGNPCNQCPSCLGIENGSILDVLELDAASNNGVDQVRALRDEAVYTPAAVRKRV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS +FNALLK LEEPPEH+ F+LATT+ K+P TI SRC QF K + Sbjct: 122 YIVDEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILPGD 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L ++ +E I LLAR A+G LRDALSL DQ + G + V + LG Sbjct: 182 IARRLSYVAEQEGIGLTSEGAALLARLADGGLRDALSLLDQCVNPS-GTIGEAEVLSALG 240 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-- 300 + + +L+E + + + + G + +LL E+ L + + + +P Sbjct: 241 LAGNLETAALMEQIAKRETAGALETLARLYGAGKDVGSLLNELSSLARDLLIRKTAPQSG 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A E +R L R + P + L +L + +RR E+ L+R Sbjct: 301 AALLTGGYDETTLRRLDRLLAPARLAQILSQLQATSADLSRSGNRRTDAELCLIRLCDET 360 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + V P Sbjct: 361 LDPSPAGLNARLTRLEEQLAGGGIPTQPVRGAPV-------------------------- 394 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q A A + +P A AR + E + E+ A+ + Sbjct: 395 -QQTAAPAAQQQPKQAAPARSEDRPPWEEERPPLPEEPGERINQVAEEEAARPAVQPQRT 453 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ-- 538 PV Q P A + + W V+ L + + Sbjct: 454 AEPVRQGAPQQQAPVQNAPAAQAFPAGDF-------------WPELVASLKGRIPMGEYT 500 Query: 539 -VALNAWKE--ESDNAVCLHLRSSQRH--LNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 +A A + + + L+ S +N G +A+A S G + +T+ Sbjct: 501 FLANPAMVQGRAENGMLTLYTDSDFTRTMINKPGILSVVAQAASARLGGQMRVTVTVGQ 559 >UniRef50_B6AMH2 DNA polymerase III subunit gamma/tau n=2 Tax=Leptospirillum sp. Group II RepID=B6AMH2_9BACT Length = 540 Score = 304 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 170/513 (33%), Positives = 245/513 (47%), Gaps = 3/513 (0%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS LARKWRPQ F+D+VGQE V+ AL LS G++ A LFSG RGVGKT++AR+LA Sbjct: 1 MSTILSLARKWRPQLFSDLVGQEFVVRALTGTLSSGKLPQALLFSGDRGVGKTTVARILA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NCE G T PC CD+C EI +G D++EID AS T VED R L + ++Y P R R Sbjct: 61 KAINCEKGPTVNPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRSLREGIRYLPFRSR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +VY+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATT+ K+P TILSRC F ++L Sbjct: 121 SRVYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQHFRFRSLG 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 V +I +LE+I+ +E ++ L L+ARA+ GSLRDALSL DQ GD S + + Sbjct: 181 VPEITAKLENIVRQELLSFPRAILNLIARASGGSLRDALSLLDQIRFLGDTPRSVEETAL 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG L+++++E N + + + A GI+ A L + + + M L Sbjct: 241 FLGMAGGLPEKKLLDSLLEGNLKNALENGDRILAMGIDPRATLRSLASKVRDLLMSSLLE 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 L + A + ++ LL G + +P + + L R + Sbjct: 301 CPLTDPRFAWDESEVPETPLPGAFFLEQMLSLLLEGEMGIRKSPQPSITFLLCLCRIVHI 360 Query: 360 HPRMPLPEPEVPRQS--FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 +PLPE + P + A QQ Q Sbjct: 361 QNILPLPEILDRLSKTGLSSSPPEPTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQ 420 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 L+R + A A + + L + + + + + A ++ K Sbjct: 421 ILERCRDAGPAVLELLEHCPVKKLSSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIP 480 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 ++ + + A H E A Sbjct: 481 FELVVSTDSSDKSPEPDSSDALARNHPLVREAA 513 Score = 60.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 40/449 (8%), Positives = 94/449 (20%), Gaps = 26/449 (5%) Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 P L+ + A+ + D SL + S + + L +L++ + E Sbjct: 88 SPDVLE-IDGASHTGVEDIRSLREGIRYLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEE 146 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELR---MR 314 V+ + I + +L + + +++ + + Sbjct: 147 P-PPHVVFIFATTEDHKI-PDTILSRCQHFRFRSLGVPEITAKLENIVRQELLSFPRAIL 204 Query: 315 ELARTIPPTDIQLYYQTLLIGRK--ELPYAPDRRMGVEMTLL---RALAFHPRMPLPEPE 369 L ++ L R + P + + + Sbjct: 205 NLIARASGGSLRDALSLLDQIRFLGDTPRSVEETALFLGMAGGLPEKKLLDSLLEGNLKN 264 Query: 370 VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAK 429 +A T + ++ T A + A Sbjct: 265 ALENGDRILAMGIDPRATLRSLASKVRDLLMSSLLECPLTDPRFAWDESEVPETPLPGAF 324 Query: 430 KSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKE 489 E + S+T + + P + R T E Sbjct: 325 FLEQMLSLLLEGEMGIRKSPQPSITFLLCLCRIVHIQNILPLPEILDRLSKTGLSSSPPE 384 Query: 490 VVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV-EQVALNAWKE-E 547 + W + + ++ + + Sbjct: 385 PTRAALRPSVPNPVATQQTDNPSAGNDPRIPSDWHQILERCRDAGPAVLELLEHCPVKKL 444 Query: 548 SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIY 607 S L ++ + E + G EL + D + P Sbjct: 445 SSGHFLLKAPNAFMEKRIQEILPAFQEVVKKNLGIPFELVVSTDSSDKSPEPDSSDA--- 501 Query: 608 EEKLAQARESIIADNNIQTLRRFFDAELD 636 ++ F E+ Sbjct: 502 ---------LARNHPLVREAASLFGGEVI 521 >UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 Tax=Bacillus cereus RepID=C2TXN4_BACCE Length = 541 Score = 304 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 233/496 (46%), Gaps = 3/496 (0%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ Sbjct: 6 MSNYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGPRGTGKTTVAKIIG 65 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 KG+NC PC C NC +I +F D++E DAAS VE+ R + D V AP G Sbjct: 66 KGVNCLAPLSNGEPCQKCANCGDINNNKFADILEFDAASNNGVEEIRQIRDQVHLAPVTG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++KVY+IDEVHMLS +FNALLKTLEEPP HV F+LATTDPQK+P TI+SRC QF + + Sbjct: 126 KYKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISRCQQFEFRNI 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + +L+ I +++ I AL L+++ AEG LR+ALS+ DQ IA V+ + V+ Sbjct: 186 PLQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNNVTIEDVA 245 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++G + L+ + E + + + R + + L +++G + + LS Sbjct: 246 TVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERK-QADFFLSDLIGYYRDLMIFNLS 304 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +A LA IP + I + L + ++ + +E+ L++ L Sbjct: 305 QKTDMFKVAIYNNAFINLAERIPLSKIPSILEELTTVQYKIKSSVYAATLIEIALVKILQ 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + +P + + + + Q+ + R+ Sbjct: 365 MEQEISMNQPNIKNNENEASSELNQTLLQSLLDTIATFNQRLDEYEKQKEQPISNQRRRN 424 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 +Q + + ++ + LE + P A Sbjct: 425 IQVYRDPKAKETAKDIVIPEITWETSKLLETFLPNCIAHIKKDNPLIANSLGEIVHATGS 484 Query: 479 KATTPVMQQKEVVATP 494 K + + Sbjct: 485 KHHIIFVMENPQQVET 500 >UniRef50_B9L148 DNA polymerase III subunit gamma/tau n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L148_THERP Length = 562 Score = 304 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 165/547 (30%), Positives = 237/547 (43%), Gaps = 15/547 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M L RK+RPQTF ++VGQE + L N ++L R+ HAYLF G RG GKTS ARLLAK Sbjct: 1 MQSGSLYRKYRPQTFEELVGQEAIARTLRNAVALDRVAHAYLFCGPRGTGKTSTARLLAK 60 Query: 61 GLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +NC PC C CR I G VD+IEIDAAS V+D RDL + V+YAP R Sbjct: 61 AVNCRDADPWRRPCNQCGACRSIATGTAVDIIEIDAASNRGVDDIRDLREKVKYAPVELR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K Y+IDE H L+R +FNA LKTLEEPP HV F+LATT+P KLP T+ SRC +F + L Sbjct: 121 TKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVVFVLATTEPDKLPETVASRCQRFDFRRLP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-----QVST 234 V+++ +L + E I L L+AR A GSLRDAL L ++ ++ Sbjct: 181 VDRMVERLRFVCLREGIEAPDDVLALIARRAAGSLRDALGLLERLAVFASDGENEPVITL 240 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 + +LG DD+ L LV A+ + + R + L+ EAA G + L E++ + Sbjct: 241 ELARQVLGGSRDDRLLDLVTAIADRDAGRALRLVAEAADAGDDLHQLGRELVRFTRTLLY 300 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL-PYAPDRRMGVEMTL 353 V+ + LA+ ++ L + L L D ++ +E+ L Sbjct: 301 VRAGGSDPLLPP-----EASALAQRFSLEELALVLRRLTGLDAPLPRSGIDPQLLLELGL 355 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + ++ P + A A TA + P A + P T+ Sbjct: 356 VESILLLDGSQRERTLAPSGATAVPAMTATPPRVVPAAPRPAPPPAASSQPAVSPTTSPA 415 Query: 414 AARQQLQRVQGATKAKK---SEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 Q T+ A ++A + A RL + V P + Sbjct: 416 VDGDDELLDQLLTRWAAIRRELRAVNSKAAALLADAEPRLIRGDEVVLVAPYEFHRRRIN 475 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL 530 + E R + + + T L++E Sbjct: 476 EEAELRRVIERVLAKHLGRACRITCLAPEDVPRQLTTAAGEPLSSEDETDPKGRLTPDSS 535 Query: 531 SLPKLVE 537 + V Sbjct: 536 GQQRPVA 542 >UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=beta proteobacterium KB13 RepID=B6BTP5_9PROT Length = 512 Score = 304 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 156/386 (40%), Positives = 241/386 (62%), Gaps = 9/386 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M LARKWRP+ F +VGQE ++ AL N + R+HHAYL SGTRGVGKT+IAR+ AK Sbjct: 1 MKNLALARKWRPKNFETIVGQEFIVEALKNSILGDRLHHAYLLSGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC TG TPC C +C EI+Q + +D+IE+DAAS T+V++ R+LL+N Y P ++ Sbjct: 61 CLNCHTGSNPTPCCECSSCVEIDQSKSIDVIELDAASNTQVDNMRELLENANYQPTSSKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ SFNA+LKTLEEPPEHV F+LATTDP+K+PVT++SRCL F+L + Sbjct: 121 KIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRCLHFNLMQMTN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 ++I QL++I EE+IA+E A+ ++++ A+GS+RDALSL D+ I +G VS + ++ + Sbjct: 181 DEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSLADRVINYTNGNVSLEKLTQI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG D L+ +++ N ++V+ L+N+ I +E+ L + ++ Sbjct: 241 LGITSDGVIDELLTNILDNNKQKVLDLLNKLKEHHISYESALKVLSE--------KIFAI 292 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + ++ + + +Q YQ + G K+LP++P + +G MT++R L F Sbjct: 293 SEEQTFGGGNKSIQR-GKQVSLQLLQTLYQISINGLKDLPFSPSQHIGFRMTIIRLLNFI 351 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTP 386 P + ++ ++ P Sbjct: 352 PTNNVNAIQLEKEQINHNESIENHEP 377 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 502 EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWK-EESDNAVCLHLRSSQ 560 E + E K E I+ D W V Q+ P + + +A N + DN + L + Sbjct: 370 ESIENHEPKKKKTIENIQIDNWDHVVDQIK-PGMAKTLAQNCVVKSQEDNFLYLIVDDRF 428 Query: 561 RHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIA 620 +HLNN + L E+L + G ++ I ++ TP + +Q ++ L A +SI Sbjct: 429 KHLNNDKYIKILEESLYTIYGE--KIKIEINEETVTSTPAQKKQIEKDDALKVATDSIKT 486 Query: 621 DNNIQTLRRFFDAELDEESIR 641 D+ I+ + FDA++ E +I+ Sbjct: 487 DSKIENILNEFDAQIIESTIK 507 >UniRef50_B0SRY5 DNA polymerase III gamma subunit n=6 Tax=Leptospira RepID=B0SRY5_LEPBP Length = 497 Score = 304 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 128/480 (26%), Positives = 226/480 (47%), Gaps = 14/480 (2%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS +QVL RK+RPQ F DV+ Q+ + +L N +I HAY+F G RGVGKT+IAR+L Sbjct: 6 MSENHQVLFRKYRPQFFRDVIYQDLAVGSLQNAFKSKKIGHAYIFIGPRGVGKTTIARIL 65 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK LNCE PC C +C EI +G D+ EIDAAS + V++ R+L +NV++ G Sbjct: 66 AKRLNCERPDGVEPCNECTSCLEITKGNSNDVFEIDAASNSGVDNIRELRENVKFNAMGG 125 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +++VY++DEVHMLS +FNALLKTLEEPP HV F+LATT+ K+P TILSRC FH + + Sbjct: 126 KYRVYILDEVHMLSGAAFNALLKTLEEPPAHVVFILATTEYHKIPETILSRCQDFHFRKV 185 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 V +++ +E + +E + ++ L +A+ +GS+RD LS +QA+ DG ++ + Sbjct: 186 PVTVLQNYIETLCTKEGLKYDSEGLFWIAKKGDGSVRDTLSFMEQAVIFTDGNLTGVKLR 245 Query: 239 AMLGTLDDDQALSLVE-AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 M+G D + + + ++ + GI+ + + + L+ + +++ Sbjct: 246 KMIGYHGIDTFTDFLNQLIDTSQSAQIFETLENLFQAGIDLSKFIWDFIEFLNSLLLIKD 305 Query: 298 SPAALGNDM--AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A + ++++ R + + L + + ++ ++ + Sbjct: 306 NLADRESINIPHEDLQKLKQNYRELDREILVLLAERI--------FSIHEKLNLMKL-RS 356 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 + + + ++ P + +++ Q P P Sbjct: 357 SYEMKVYLEIQFRKLILDREKPSVSGLLAKISELTKLVQGDLSNIPESVEPVKKISTPPP 416 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 Q + + T + E N ++ + + ++ Sbjct: 417 TQSATQKKEPTTTAQKENDQIDSNHTKQNENMDSNPLPSKSESQSINKPISTPPSSPEDM 476 >UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y4_9BACT Length = 640 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 162/636 (25%), Positives = 253/636 (39%), Gaps = 27/636 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQ F+DVVGQ + + + G I HAYLFSG RG GKT++ARL AK + Sbjct: 2 YISLYRRYRPQKFSDVVGQSAAIGVITRAIESGAIGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + A PC C+ CR I +G +D+IEID AS V++ R+L ++V A +KV Sbjct: 62 NCPSKTGAEPCNECETCRAIREGSCLDVIEIDGASNNSVDEIRNLKEHVALASFTCPYKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKTLEEPPE V F+LATT P K+PVTI SRC + +EQ Sbjct: 122 YIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQHIPFHGMTLEQ 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I ++L+ + E I AL +AR +EG +RDALSL +QAIA G G V+ + V +LG Sbjct: 182 IVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQAIALGAGSVTRETVDKLLG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + A E + ++ G E E L + + + + + + Sbjct: 242 GGSSSSIRQWL-SGSHATPENSLPILEGLFRSGAEPERFLSVLFACVRNLWLQKRWGEKI 300 Query: 303 GNDMA---AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +A + + + ++ + ++ + + + L Sbjct: 301 LRALALSEEERQWLAQEKDFLSLPHLEELMARIASLLPQVRRGLSIDVLCGLLVSWTLKS 360 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 S V+P + + AP AP ++ A + Q Sbjct: 361 AVSEVSLPDVETAASATNVSPEGRAARIRSGARDTGAPASAPVRSRLPESAPSAAQKAQT 420 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 +++ A + + A + Sbjct: 421 APETEMPPREQAARAESGASPSAAEVPSAETVGSL----------------APLHSDVKD 464 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQV 539 A + ++ VA P L + + EL L + ++ ++ + K + V Sbjct: 465 ALLSALGKQPNVAVPLCLADIVYDRERQELGILLNEDDVQA---YETLNSERMAKAAQSV 521 Query: 540 ALNAWKEESDNAVCLHLRSS-QRHLNNRGAQQK--LAEALSM-LKGSTVELTIVEDDNPA 595 E + R HL+ A + L AL+ G + Sbjct: 522 LHLNDLEIQSIKLQCGSRVERFDHLDAERAPENTPLQLALAEDQPGKDSPYAGFLRRDAE 581 Query: 596 VRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF 631 P + + LR F Sbjct: 582 AAAPERLEKRNARADKNATATPSKNSSLADYLRGTF 617 >UniRef50_C6QBE2 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBE2_9RHIZ Length = 617 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 262/579 (45%), Gaps = 27/579 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP TF D++GQ ++T L N + GRI Y+ +G RGVGKT+ AR+LA+ L Sbjct: 24 YVVLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQGYMLTGVRGVGKTTTARILARAL 83 Query: 63 NCETG---------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 N E T G+ +C++I +GR D++EIDAAS T V++ R+++++ QY Sbjct: 84 NYEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDVLEIDAASNTGVDNIREIIESAQY 143 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 P R KV++IDEVHMLS+ +FNALLKTLEEPP HV+F+ ATT+ +K+PVT+LSRC +F Sbjct: 144 TPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRKVPVTVLSRCQRF 203 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 L+ ++ + + I E + ALQL+ARAAEGS+RD LS+ DQAIA G+G V+ Sbjct: 204 DLRRVEQPVLAAHFKKISESEGAEADADALQLIARAAEGSVRDGLSILDQAIAMGEGHVT 263 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 +V MLG D + L EA+ + + G E ++ ++ +H IA Sbjct: 264 AASVRDMLGLADRGRIFDLAEAIFRGDLPAALNGFASLHRDGAEASEVIGDLAEAVHAIA 323 Query: 294 MVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 V+ A + A + R+ +LA + + +Q L+ G +E+ P+ + EM Sbjct: 324 RVKAVGEEPAGESLTAEEKKRLSDLASRLSMPYLSRAWQMLIKGLEEVGRTPNPDVAAEM 383 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 L+R E A A + P + T Sbjct: 384 VLIRLAYTADLPTPDELIRGLGGSAMPARRPALAPAETRTSDTRPTVNTTTTAPRADAEH 443 Query: 412 VLAA--------RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVP 463 A + G + + ++ +R + + + ++ + + Sbjct: 444 DDLATGDVFDFVGDDGELDDGDALDDDEQTSLSSASRLPDPRSFVDVVTLVGEKRDVKLK 503 Query: 464 SALEKAPAKKEAYRWKATTPVMQQKEVVATPKAL--------KKALEHEKTPELAAKLAA 515 LE + + + V + + A + Sbjct: 504 MHLENDVSLVKFDAVAGSIDVFLLPDAPPELANDLREKLNLWTGRRWVVVLSKDAGQRPI 563 Query: 516 EAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCL 554 + R+ AA++ QL + V + L Sbjct: 564 GVVRREREAAELEQLKQHPAMRAVLQAFPDAKIAEVRRL 602 >UniRef50_A9BDA2 DNA polymerase, gamma and tau subunits n=2 Tax=cellular organisms RepID=A9BDA2_PROM4 Length = 578 Score = 303 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 148/522 (28%), Positives = 239/522 (45%), Gaps = 20/522 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y L K+RPQ+F D+VGQ+ + + L L RI AYLF G RG GKTS AR+L Sbjct: 1 MSNTYAPLHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARIL 60 Query: 59 AKGLNCET--GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 A+ LNC T PC C+ C+ I G +D+IEIDAAS T V++ RDL++ ++AP Sbjct: 61 ARSLNCLNVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPV 120 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ+L TI+SRC +F Sbjct: 121 IARWKIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFS 180 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +++ + + L+ I N+E I E A+ L+AR ++G LRDA S+ DQ ++ A Sbjct: 181 QIELNDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLPQ-PITVNA 239 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +LG + +++ L L A+ + + ++ + E G + +L + +L + + Sbjct: 240 VLDLLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVLKN 299 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 +P ++ E+A + P + + L L ++ R Sbjct: 300 AAPDYPDLCSISQESHQKLSEIASLVEPERLLQWQSHLKGSENNLRHSSQPR-------- 351 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + + L P + A Q + P + P P ++ +A Sbjct: 352 ---LWLEVLLLGLLNEPFNTKLETQVNAARANISYTSQERHEPSENPNKNNPNLENKNVA 408 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 + Q + + + + + + + ++ Q + E Sbjct: 409 DKHQSSLEKNVNVKETNSGLSEAWEQVLARI--DLPSTRMLLSQQAQLVGLSENKAEINV 466 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 A W + A +AL + + + + E Sbjct: 467 AENWLGMIESRKSLLEKAINEALGQERKLILNSQSRLSVNTE 508 >UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES0_ELUMP Length = 627 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 151/461 (32%), Positives = 220/461 (47%), Gaps = 12/461 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L+ K+RPQTF DVVGQE + L N + LGR+ HAYLF G RG GKT+ AR+ AK L Sbjct: 11 YISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKAL 70 Query: 63 NCE---TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG 118 NC A+PCG C C EI G +D++E+DAAS T+V+ R+ ++D V A R Sbjct: 71 NCTGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIIDTVALAATRD 130 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK++++DEVHMLS SFNALLKT+EEPP HV F+LATT+ K+P TI SRC F + + Sbjct: 131 RFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRPI 190 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L + +E+I EP+A+Q++A A G+LRDAL++ D+AIA DG ++ + V Sbjct: 191 TQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELVI 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG + +D + V+A+++ N + + G + + L ++ L + + + Sbjct: 251 DMLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLFYLSIG 310 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A ELA+ P+ I + + E +A + + Sbjct: 311 HGHEPFSGA------AELAKKTSPSYIAGLTRKINKVIDETKFADSP--LITAEVGIFTV 362 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + L + T + P Q + T V A Sbjct: 363 MDSCIDLDAFIKRLEKLESALSGNSPTEEEKKNLNSFNPSQTKDNNIEITQKPVTAKITV 422 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 Q A K A P+ Q Sbjct: 423 ENIGQEAPKKAPKVVHAKIADIPLPAKKSTTAQPENADFQK 463 >UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 Tax=Acetobacteraceae RepID=B5ZIA7_GLUDA Length = 687 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 164/427 (38%), Positives = 237/427 (55%), Gaps = 13/427 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP T D++GQ+ + L N +LGR+ HA++ +G RGVGKT+ AR++A+ L Sbjct: 57 YRVLARKYRPTTLDDLIGQDSTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARAL 116 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC G TA PCGVC NC I R D++E+DAASRT V+D R++++ ++ P + Sbjct: 117 NCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATRFRPMQ 176 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR KV++IDEVHMLSR++FNALLKTLEEPP V F+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 177 GRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSRCQRFDLRR 236 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD------GQ 231 + + I E P AL L+ARAA+GS+RD LSL DQAIA G Sbjct: 237 VPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGSVEGDGAAP 296 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + + V+ MLG D + L+EA++ +R +A+ +EA ARG + +L ++L L+H Sbjct: 297 IGAERVADMLGLADRGRVFDLLEAVLAGQPDRALAITDEAHARGADLGVMLGDVLELVHT 356 Query: 292 IAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ ++ PA + A R LA + + +Q LL G E+ APDRR Sbjct: 357 VSRLKAVPALRQSADLPEAERERGGALADRLSVPVLGRTWQMLLKGLSEVEMAPDRREAA 416 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETT 409 EM L+R P + + + P Q S A + +P Sbjct: 417 EMILIRLCYVADLPPPGDLVRRLTEGGETGGSGSGALSGGPAQGTSQGTSASGLSVPGRP 476 Query: 410 SQVLAAR 416 Sbjct: 477 VSGNPVS 483 >UniRef50_A4C5P9 Putative DnaX, DNA polymerase III, gamma/tau subunits n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5P9_9GAMM Length = 820 Score = 302 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 249/624 (39%), Positives = 345/624 (55%), Gaps = 10/624 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQVLARKWRPQ F +VGQEHV AL N L+ R+HHAYLF+GTRGVGKT+IAR+ AK Sbjct: 1 MSYQVLARKWRPQNFHQLVGQEHVKQALVNALTQQRLHHAYLFTGTRGVGKTTIARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNCE GITATPCG C C +IE GR++DL+EIDAASRTKVEDTR++LDNVQYAP RGR+ Sbjct: 61 SLNCELGITATPCGQCSACLDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF+L AL Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLSALSR 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI QL +L EE I E +L LLA+AA+GS+RDALSLTDQAIA +GQV+ V +M Sbjct: 181 PQIEQQLSFVLTEEQIHFEVASLALLAKAADGSMRDALSLTDQAIAQTNGQVNESQVKSM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D A L+ ++V+ +G +++L+ + + +++L ++L L H + + QL P+ Sbjct: 241 LGLMDASWAKRLLVSIVDKDGAELLSLVADLVKQNANAKSVLDDLLSLTHLLLLTQLVPS 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A + +++++ P +Q+YYQ LL G+K+L +APD ++G+EM LLR LAF Sbjct: 301 AAA-FNEDEADFIDAMSKSLSPEQVQVYYQLLLGGKKDLQWAPDEKLGLEMVLLRLLAFE 359 Query: 361 PRMPLPEPEVP-RQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P S P + A+ Q+ S + T+Q Q Sbjct: 360 PHFSASNTISTVMPSALPSSNKAMSNIRQMLAGQASGDKLTAQTAQTAQTAQTAQTAQTT 419 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 Q Q + + + V ++ + P+ S + +A Sbjct: 420 QTTQNNSPVPTASVESVVEHPAVAADKVQTPELAVVENASEPLISQSAVSAVPLDAVALN 479 Query: 480 ATTPVMQQKEVV-ATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + + ++ A + + L + + LA +A +A + Q++ P+ Sbjct: 480 NSLESTEPEQSQDAWHQQYDEILTQAQEYREYSDLAHQANTVPDNSALMQQINQPEDHLV 539 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAE-------ALSMLKGSTVELTIVED 591 + + ++D L Q L + S +I Sbjct: 540 TDTVSLESQADLPTSAQLVEQQLSGAQSAIAAILRNRNISSHGLVKPESSSLPLSSINTP 599 Query: 592 DNPAVRTPLEWRQAIYEEKLAQAR 615 + +T + R + + Q R Sbjct: 600 GDTEKKTEPQQRGNLVAQSQQQIR 623 Score = 97.4 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 11/345 (3%) Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 P + + A+ Y+ + PD ++ Sbjct: 487 PEQSQDAWHQQYDEILTQAQE---------YREYSDLAHQANTVPDNSALMQQINQPEDH 537 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 E + + A + + + + +S + + Sbjct: 538 LVTDTVSLESQADLPTSAQLVEQQLSGAQSAIAAILRNRNISSHGLVKPESSSLPLSSIN 597 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + +++ ER A P + + A+ Sbjct: 598 TPGDTEKKTEPQQRGNLVAQSQQQIRPNDEREDKAMVAYAAVEKPQSPRSSHVMDPAHLA 657 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + ++ V A + +E + A ++D WA + Q+ L + Q Sbjct: 658 PELLVQISEQPKVEEV-AETQVIEIPEGFVSPLTDIRFAHQQDAWANLIEQMQLGGRIRQ 716 Query: 539 VALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRT 598 AL+ + D V L + + Q+HL++ ++KL E+LS+ + L+I + T Sbjct: 717 FALHGLFSQQDQNVTLQVDAQQQHLDSAVMREKLTESLSLALARDITLSIEFVNAVTG-T 775 Query: 599 PLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI 643 P + +Q + + A+E I D Q R F A +DE SIR + Sbjct: 776 PYQIQQQLDSNRWYHAKEVIENDAVTQQFMRRFAAVIDENSIRAL 820 >UniRef50_C8PKZ6 DNA polymerase III subunit tau n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PKZ6_9PROT Length = 763 Score = 301 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 174/615 (28%), Positives = 267/615 (43%), Gaps = 55/615 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP++F ++GQ+ V +LA+ L GR+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKSFEQLIGQDAVAKSLAHALDSGRLSHAYLFSGLRGSGKTSTARIFAKALL 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T PC VCDNC +GR +D+IE+DAAS K++D R+L++ +Y PA RFK++ Sbjct: 62 CDKGPTGKPCEVCDNCVMANEGRHIDIIEMDAASHRKIDDIRELIEQTKYHPASARFKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ + NALLKTLEEPP +VKF+LATTDP KLPVT+LSR F K + + Sbjct: 122 IIDEVHMLTKEASNALLKTLEEPPAYVKFILATTDPLKLPVTVLSRTQHFRFKPIAKSAV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L IL E+IA+E AL++LAR+ GSLRD L+L DQAI ++ +A++ MLG Sbjct: 182 VAHLAQILKTENIAYEDGALEILARSGSGSLRDTLTLLDQAIIFSREGITQRAIADMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +++ ++ + + +I E E ++ EM+ L Sbjct: 242 LDPAKIGEILDIVLRQDRAGAIEIIKEV--ENYNAETIIDEMIANLKD------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +R A + +++ L + L +PD + M + + Sbjct: 288 -------KFLRRDA-KFSLLMYERFFRILAGAKSMLAISPDNTYAISMMIFMMMEAVNLR 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E +S + + P +Q A + Q Sbjct: 340 EIDELIEVGRSLDQG-------------------EDYASASAPNLNAQSSAPNFRSNSNQ 380 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 A +EP A A +A+ + S T RPV +A A Sbjct: 381 SAAFTSNNEPGGAAFASSDRGSAISGVPSFTAS-AKRPVNTAQNSGAGGAAKQSHDANGE 439 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + A + + + D + Sbjct: 440 IKPGAAAQAQNSSSSVKTGAQNEIYENFLAKIYDRDYDMGEKFSKCVE------------ 487 Query: 544 WKEESDNAVCLHLR-SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEW 602 + + + L R Q R + + L L G ++ I + P + Sbjct: 488 FLKFERGTLYLLSRAQGQDREYLRKGSRAINSVLKSLFGEGAKIKIEQSAPQNGDVPAQS 547 Query: 603 RQAIYEEKLAQARES 617 + + A A +S Sbjct: 548 ERDQNSARGATATQS 562 >UniRef50_A1B872 DNA polymerase III, subunits gamma and tau n=32 Tax=Alphaproteobacteria RepID=A1B872_PARDP Length = 592 Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats. Identities = 164/437 (37%), Positives = 239/437 (54%), Gaps = 7/437 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG Sbjct: 7 NYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKG 66 Query: 62 LNC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LNC + G T PCGVC++C I +GR VD++E+DAASRT V D R+++++V Y A Sbjct: 67 LNCTGPDGQGGPTTEPCGVCEHCVAISEGRHVDVMEMDAASRTGVNDIREIIESVHYRAA 126 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 127 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLR 186 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + Sbjct: 187 RIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETTATQ 246 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V AMLG D + L L + ++ +A + A G + A+L ++ + H +++V+ Sbjct: 247 VRAMLGLADRGRVLDLFDMILRGAAAEALAELQAQYADGADPMAVLRDLAEITHWVSIVK 306 Query: 297 LSPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++P AL + R + +A +P + +Q LL E+ AP+ M EM ++ Sbjct: 307 ITPEALDDPTIGPDERARGQAIAEKVPMRALTRLWQMLLKALDEVGQAPNAMMAAEMAII 366 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R Q+ A + AP P+ A Sbjct: 367 RLTHVADLPDPETLIRKVQASAAAGEFSRNAAPSAARGEAPPRAAAPRTPVAVRQDGSAA 426 Query: 415 ARQQLQRVQGATKAKKS 431 A +S Sbjct: 427 ALAVSPDALAGFPDFES 443 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 66/480 (13%), Positives = 126/480 (26%), Gaps = 40/480 (8%) Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + E + + +R +R+ + AS ++ + + L Sbjct: 90 VAISEGRHVDVMEMDAASRTGVNDIREIIESVHYRAASARYKI---YIIDEVHMLSTSAF 146 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL-LHRI-------AMVQLSPAA 301 +L++ + E + I +L L RI + +++ Sbjct: 147 NALLKTLEEPPPH--VKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIALLRRIATTE 204 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + A L Q + G E A R + + + Sbjct: 205 GAQITDDALALITRAAEGSARDATSLLDQAISHGAGE-TTATQVRAMLGLADRGRVLDLF 263 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 M L + P V ++ + +R Sbjct: 264 DMILRGAAAEALAELQAQYADGADPMAVLRDLAEIT-HWVSIVKITPEALDDPTIGPDER 322 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 +G A+K A TR + AL+ + + + A + A Sbjct: 323 ARGQAIAEKVPMRALTRLWQMLLKALDEVGQAPNAMMAAEMAIIRLTHVADLPDPETLIR 382 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS---------- 531 + A A E P AA A+ +D AA ++ Sbjct: 383 KVQASAAAGEFSRNAAPSAARGEAPPRAAAPRTPVAVRQDGSAAALAVSPDALAGFPDFE 442 Query: 532 --LPKLVEQVALNAWKEESDNAVCLHLRSSQRHL-----NNRGAQQKLAEALSMLKGSTV 584 + + + + D+ + + R Q+LAE L G Sbjct: 443 SVIELIRRMRDMKLLLDVEDHLRLVRYSPGRIEFQPTDKAPRDFAQRLAERLRGWTGGQ- 501 Query: 585 ELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRPI 643 + T E R A E A + + +Q + F A++ + IRPI Sbjct: 502 RWAVTVTSEAGRPTISEQRAAREAEARA----RAMQNPTVQAIFAAFPGAKITQ--IRPI 555 >UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQ39_HIRBI Length = 619 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 173/547 (31%), Positives = 246/547 (44%), Gaps = 7/547 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQVLARK+RP TF D+VGQE ++ L N GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 36 AYQVLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRIAHAFMLTGVRGVGKTTTARLLARA 95 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN P +C+ I + R D++E+DAASRT V D R+LLD V+Y+P Sbjct: 96 LNYSRDGVEEPSVQLSPVGRHCQAIMESRHPDVLELDAASRTGVADMRELLDGVRYSPVN 155 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F+L Sbjct: 156 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFNLAR 215 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQA 236 L + + L I +E L L++RAAEGS RDALS+ DQAI +VS A Sbjct: 216 LTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVLDQAIVQSTGDEVSVDA 275 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L++A + + + N G E + L+ ++L + IA Q Sbjct: 276 VRDMLGLADRARVFDLLDAAIAGEHKVALEETNAQLQEGAEAQILMKDLLDAMAEIARAQ 335 Query: 297 LSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R ++LA +I Y++ LL G ++ APD + EM +LR Sbjct: 336 AMGESYVFAGPVEWTQRTKKLASSISNAQSARYWKLLLQGYEDCARAPDPNVAAEMAVLR 395 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 A + Q+ P+ P A Sbjct: 396 LAAAAALPSPEDAARMLQNGPSGNNPNGGGPSGGGAYSNGDPGPGAQSYQANGGGGARAQ 455 Query: 416 RQQLQRVQGATKAKKSEPAAATR-ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 V A K +E A A + + + Sbjct: 456 SGAQSVVARAVPDKYAEAAPGPVLGSLNQICAALQGDKQIHLLYDVEHYVRPAEVRYGLF 515 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 Y PV Q + + + + E R ++P+ Sbjct: 516 TYAAAPGIPVDFQMRMKNWLEDKTGVEWNVDLGHSTKESLEEIRVRQEKERVAEVSAIPR 575 Query: 535 LVEQVAL 541 + E + L Sbjct: 576 IAEALEL 582 >UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C546_SPHTD Length = 589 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 160/578 (27%), Positives = 240/578 (41%), Gaps = 19/578 (3%) Query: 4 QVLARKWRPQTFA--DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 Q L RK+RP++FA + VGQEH+ L N + L R+ HAYLF G RG GKTS ARLLAK Sbjct: 16 QSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKA 75 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC A PC C+ C I G VD+IEIDAAS V+D RDL + V+YAP + R Sbjct: 76 VNCLAPDPEARPCNACEACEAINAGTAVDIIEIDAASNRGVDDIRDLREKVKYAPTQLRV 135 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDE H L+R +FNA LKTLEEPP HVKF+LATT+P KLP TI SRC +F + + Sbjct: 136 KFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQRFDFRRFAL 195 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-----QVSTQ 235 + L + E + E AL+L+AR A GS+RDAL L +Q G+ ++ Sbjct: 196 SDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKLVITAD 255 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 AV + G D+ ++LV+A+ + + + +I EA G + L +++ L + ++ Sbjct: 256 AVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLRTLLLI 315 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + R A ++ +T L ++ +E+ L+ Sbjct: 316 RAGGTSD-----EAGDDARAQAEQFTVAELAALVRTFSSIEGALNKGSYAQLPLEIALVE 370 Query: 356 AL---AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 ++ P P+ P A A +P P + Q ++ V Sbjct: 371 SIVGATPAAAPPAESPQPPPIRPAEPARAVAPSPRPEPARRQPPVREPSPVLRTVRPVDS 430 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAK 472 E A+ + + + P+ E+ Sbjct: 431 PRPAPTPAATPRPAAGSALERLVASWGQIRRDVKMANSRVAALLSSVDPLDVRGEEVVLV 490 Query: 473 KEAYRWKATTPVMQQKEVVATPKALKKALEHE---KTPELAAKLAAEAIERDPWAAQVSQ 529 + + VV + PE +A A + Sbjct: 491 SPYEFHRNKLNDDGIRAVVEDVLGRYMGGPYRVVCLAPEEIRDVAPAAPMPTEATPTPTP 550 Query: 530 LSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRG 567 A + ++ D RS Sbjct: 551 PPANGGASPSAAESPADQDDERRLRAARSIFNAEEIEP 588 >UniRef50_Q1GKB7 DNA polymerase III subunits gamma and tau n=4 Tax=Rhodobacteraceae RepID=Q1GKB7_SILST Length = 608 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 176/598 (29%), Positives = 278/598 (46%), Gaps = 17/598 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP+TFAD+VGQ+ ++ L N + RI A++ +G RG GKT+ AR++AKG+ Sbjct: 17 YQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGM 76 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCG C++C I +GR VD++E+DAASRT V D R+++D+V Y A Sbjct: 77 NCIGEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAYRAAS 136 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS +FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 137 ARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRR 196 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ E + L I E AL L+ RAAEGS RDA SL DQAI+ G G+ + V Sbjct: 197 IEPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQV 256 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + L L++ ++ + + ++ A G + A+L ++ + H +++V++ Sbjct: 257 RAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDLAEITHWVSVVKI 316 Query: 298 SPAALGN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 +P A + R +++A +P + +Q LL +E+ AP+ + Sbjct: 317 TPDAAEDPTISPDERARGQDMAARLPMRVLTRMWQMLLKALEEVAAAPNAM---MAAEMA 373 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 + LP PE + P Q A Sbjct: 374 VIRLTHVADLPSPEELLRKLQDTPPPPHPGGPGGGHPMQGMGSPAAGGGGGAPAYASAPP 433 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + + ++AL R S ++ ++ + Sbjct: 434 QGAPGGDPRGGHTMSTSGGQSAVLAQRADSALARYPSFEHVIELIRHHRDVKLLVEVETG 493 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKL 535 R + P + A A +I D A +++L Sbjct: 494 VRLVSYQPGRIEFTPAANAPQDLAARIGTALQNWTGSRWVVSIAPDGDAPTIAEL----- 548 Query: 536 VEQVALNAWK-EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 A NA + E S + + + + + + A + + E+ D Sbjct: 549 -RDAAQNALRAEASAHPLVQAVLQNFPKAKITKIRTQEELAAEVQAEALPEVEDEWDP 605 >UniRef50_Q89A95 DNA polymerase III subunit gamma n=42 Tax=Enterobacteriaceae RepID=DPO3X_BUCBP Length = 370 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 182/366 (49%), Positives = 271/366 (74%), Gaps = 3/366 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y +LA+KWRPQTF DV+GQ+++++A++N L LGRIHHA+LF G RG GKT+IAR+LAK Sbjct: 1 MNYHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GI+ PC C NC E+EQG F+DL E+DAASRTKVED ++LLDN++Y P++GRF Sbjct: 61 SLNCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLSR+SFN LLK +EEPP+H+KF+LATT+ +K+P TILSRCLQF LK +++ Sbjct: 121 KIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I + +IL++E+I +E +AL L+++ +EGSLRDA++LT+Q I+ G G ++ + V Sbjct: 181 NEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKT 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +DQ L ++ ++ + + ++ + I +E +LVE+L LLH+I+++++ P+ Sbjct: 241 LGMLYEDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQISIIKIIPS 300 Query: 301 ALGNDMAAIEL---RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 ND + ++++A DI LYYQT L+G+KEL APD+++ +EMTLLR Sbjct: 301 IKLNDTKYSKNMQHAIQKIAELSNYNDIYLYYQTALLGKKELHIAPDQKISIEMTLLRMF 360 Query: 358 AFHPRM 363 + + Sbjct: 361 NLNTKP 366 >UniRef50_C5J6I0 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6I0_MYCCR Length = 665 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 136/526 (25%), Positives = 243/526 (46%), Gaps = 18/526 (3%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS Y RK+RPQTF DVVGQE ++ +L N ++ + HAYLF+G+RG GKTS+A++ Sbjct: 1 MSSKYIAWYRKYRPQTFNDVVGQELIVQSLKNIITSQQYFHAYLFAGSRGTGKTSLAKIF 60 Query: 59 AKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A LNC+ PC C +D+IEIDAAS V++ R+L++NV P Sbjct: 61 ANTLNCQHKRDLLIPCETCIA----NINNSLDIIEIDAASNNGVKEIRELIENVANLPQN 116 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 +KVY++DE HML+ +FNA LKTLEEPP+HV F+LATT+ K+P+TILSR +F+ Sbjct: 117 SPYKVYIMDEAHMLTTSAFNAFLKTLEEPPKHVIFILATTEVHKIPLTILSRLQRFNFVK 176 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + ++ + +LE +L +E I++E AL+++A+ +EGSLRDALS+ +Q G+G+++ V Sbjct: 177 VQIQDVIKRLEFVLQKEAISYEIGALEMVAKLSEGSLRDALSILEQVSTFGNGKLNLSDV 236 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + G +++ + + ++ + + +A++ + +G + + L +L L+ + + Sbjct: 237 ETLFGLTSNEKIVEFINSLYAEDIKESLAILKQIFEQGKQTKLFLNSILNLIKNWLIYNI 296 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + I + ++ I Q + ++L Y+ + +EM +++ + Sbjct: 297 AHSTDLLSNSDI-EILDKI--KIDKAFAYKLQQIIFETIEKLIYSDNSNSFLEMMVIKII 353 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 A E S+ P T + + + + + + Sbjct: 354 AKKEESRTVESYANPVSYLPSKIAENTIITNDKQEFDNQKIKINFQRPKDENPFQSQSWK 413 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 VQ T + +P + + Q PS Sbjct: 414 SNISVQIPTPQQS--------DKPKISTLKKSQEIANFDGQKEGYPSPETTIANNDSQSL 465 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPW 523 + ++ + L + + E + D Sbjct: 466 IETIDEHFNEQVMENNLSYLAQEEQIEHNSSPILEQNLTNNALDSH 511 >UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S3_COPPD Length = 522 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 152/523 (29%), Positives = 240/523 (45%), Gaps = 6/523 (1%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RPQTF +VVGQ HV L L +I HAYLF+G +G GKTS AR+ AKGLNC Sbjct: 2 ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 ETGIT+ PC C++C+ I +G +D+IEIDAAS V++ R+L + V+Y PA+ R+KVY+ Sbjct: 62 ETGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSRYKVYI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDE HML+R +FNALLKTLEEPPE+V F+LATTDPQK+P T+LSRC +F K L +++ Sbjct: 122 IDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDEVF 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 LE++ E +++ AL+L+A ++G++RDAL+L +Q +G+VS + +L + Sbjct: 182 QILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLNVV 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR-IAMVQLSPAALG 303 +D+ L L++ + + + + E G+E L M L+ R + + P + Sbjct: 242 EDEVILDLLKTAFA-DMDEAVERLAELMESGVEPMELFRTMKSLVRRSVFRNKPWPRDVA 300 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +M + + + L R + + G E L Sbjct: 301 LEMFRVLESYNFIMERTEFPAV-ALVALLNELRSKANLGT-PKGG-ESAPLSEKNADKEK 357 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + A AA + V+ Sbjct: 358 TRVAEKPQEPAAETQKENKHSEKREELANDVEAEAVKEATESESKREVSDAAATTVTAVE 417 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 ++ + V + + + + P Y P Sbjct: 418 EKESSQD-ATDLQSWIENVRSEYFPLYVVLREGKARIEGDRLILSFPGLLHMYGRFMELP 476 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 +Q+ ++ E E+ E ++ + Sbjct: 477 QVQKVLHNYGHFKVELQTEAEEKDESVLEIFKQVFPEAQIEEV 519 >UniRef50_A5IZC8 DNA polymerase III subunit gamma and TAU n=2 Tax=Mycoplasma RepID=A5IZC8_MYCAP Length = 614 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 145/586 (24%), Positives = 250/586 (42%), Gaps = 36/586 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L RK+RP+ F DV GQ++++ L N + +I HAYLF G RGVGKTS+AR+ A Sbjct: 1 MSYKALYRKYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFAN 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC + C +C+ +D+IE+DAAS V+ R+L D +Q+ P+ G Sbjct: 61 LINCYHNNDDYSKLCQICEE----NGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSVG 116 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +K+Y+IDEVHMLS+ +FNALLKTLEEPP HV F+ ATTDPQK+P+TILSR +F+ + + Sbjct: 117 NYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRM 176 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + Q++ IL +E I ++ AL +AR A GS+RDALS+ DQA A G+G + V Sbjct: 177 SNDTLVKQIKSILEQEGIKYDAEALPYIARLAVGSMRDALSIIDQANAYGNGYIKFSDVM 236 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 G +D + ++ ++ E + L+ + GI+ + L+ +L + + + + Sbjct: 237 YSFGITSNDNLIKIINSLYNGKSEEALMLLQDLKNGGIDPKQLVESLLSIFKDFIIYEKT 296 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + L +L YA + + + Sbjct: 297 YKDSLFE--------------------ILTLDQFNTLEFDLRYAVNSSELLYKLVKEMYY 336 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + + + P + + + + ++ Sbjct: 337 ASGNLFQLIELYLVKMAREIEPKEEKKEQVIMQVDKDEKKARID----SINEILSQTQEI 392 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + ++ + S + E P K ++ Sbjct: 393 VLESNNDSSINDILSSDILTNEQGDSESDFSEESPLINTSEIDLTQFDEDEPKIKLFPKY 452 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQ 538 + ++ + + LK AL +L + + +L++ Sbjct: 453 DKSFDYAKEFTPKFSVEQLKSALILSDQQQLKSASMTLNYL----VNLSNNKEYKELIDV 508 Query: 539 VALNAWKEESDNAVCLHLR--SSQRHLNNRGAQQKLAEALSMLKGS 582 + K +N + L S+ +L +Q E + GS Sbjct: 509 LKNTNIKAAGENYIVLTSANISALNYLQAISYKQNFQEFIKENFGS 554 >UniRef50_B1VAI4 DNA polymerase III, gamma/tau subunit n=1 Tax=Candidatus Phytoplasma australiense RepID=B1VAI4_PHYAS Length = 602 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 208/394 (52%), Gaps = 4/394 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY VL RK+RPQTF DVVGQ+ ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 4 SYLVLYRKYRPQTFQDVVGQKFIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAKV 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + C C +C Q D++E+D AS V++ R++ D QY P G+ K Sbjct: 64 INCIYPQSGDVCNKCTSCLGSLQ-TNNDIVELDGASYNGVDEIREIQDKAQYKPHIGKNK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVH+L+ ++FNALLK LEEPP+HV F+L TT K+P TILSR F + L +E Sbjct: 123 VYIIDEVHVLTPNAFNALLKILEEPPKHVVFILITTQMHKIPETILSRAQSFSFENLSLE 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I QL+ I N E I A++ +A +EGS+R+ALSL DQ + + ++++ ++ + Sbjct: 183 NIILQLKKITNLEKIVITDDAIKDIANYSEGSMRNALSLLDQISSYQNNLITSEDIAEIK 242 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + +L ++E N + + L+N+A G + L+ ++ L + QL Sbjct: 243 GVVSGSFLKNLFCCLIERNYNQALKLLNKAVDSGKNLDLLVANLINSLKNYFLEQLKQNE 302 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + + I Q L ++ L + ++ +E+ ++ F P Sbjct: 303 KEQNENLGKKNINNYELELQIDFI---LQIFLKLQQNLKKSSQKKDLLEIAFIQICYFSP 359 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + P A + T+V + + Sbjct: 360 SHQNLSISETEKILKPNATKIEIEKTKVISEKKP 393 >UniRef50_Q8D230 DnaX protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D230_WIGBR Length = 365 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 153/364 (42%), Positives = 235/364 (64%), Gaps = 1/364 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L KWRP+ F D++GQ+HVL L N +I+++YL SG RG+GKT++ARL+AK Sbjct: 1 MNYKPLNIKWRPKIFNDIIGQDHVLRFLKNSFLDKKIYYSYLISGIRGIGKTTLARLIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC I PC +C NC E E+ FVDLIEIDAAS TK+E+ +++LDN++Y P++GR+ Sbjct: 61 SLNCFYDINFNPCRICKNCEESEKNCFVDLIEIDAASHTKIENIKEVLDNIKYLPSKGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS++SFNALLK LEEPP HVKF+LATT+ K+P TILSRCL LK + Sbjct: 121 KIYIIDEVHMLSKYSFNALLKILEEPPNHVKFILATTELNKIPETILSRCLHLQLKEISE 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I + L+ IL E I +E AL++++++++ S+RDAL+L ++A G+ + VS M Sbjct: 181 TDILYNLKKILKLEKIYYEEEALKIISKSSQHSMRDALTLAEKASILGENNILYNVVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E + E+++ + + I W+ L+ M+ ++H++ + + Sbjct: 241 LGCISFMELIDLFEIISLNKKEKLIFFFKKIENKSINWDDFLINMILIVHKVLFFKFNDT 300 Query: 301 ALGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + +L++ I D+ YY L GRKEL Y+ ++++ VE+T+LRA F Sbjct: 301 YKDPKKINTKKTKFYKLSKLISTNDLYKYYDIFLQGRKELSYSTEQKITVEITILRAFYF 360 Query: 360 HPRM 363 Sbjct: 361 INEN 364 >UniRef50_Q30Q97 DNA polymerase III, tau subunit n=4 Tax=Epsilonproteobacteria RepID=Q30Q97_SULDN Length = 543 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 141/409 (34%), Positives = 206/409 (50%), Gaps = 22/409 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQE + L+ L R+ HAYLFSG RG GKTS AR+ +K Sbjct: 4 SSEVLARKYRPINFDELIGQESISQTLSLALDANRLSHAYLFSGLRGSGKTSTARIFSKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE GI+ PCGVC NC + R +D++E+D AS K++D RDL++ +Y PA RFK Sbjct: 64 LICEKGISHKPCGVCQNCILALENRHIDIVEMDGASSRKIDDIRDLIEQTKYKPATARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKSIATN 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL ++AR+ GSLRD L+L DQAI V + V+ ML Sbjct: 184 KIADHLSHILNLEGIKYESEALDIIARSGSGSLRDTLTLLDQAIIYSKNYVDVRTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D L A+ + +++ + E + +L E++ L Sbjct: 244 GLVDPKFLQELFNAVFAKDYAKLIQHVKSLEDY--EAQMVLDELIAFLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYASDALYSTLVLDRFFRILSDAKYLFSINADGSFVLSLIFFKMVEALR 341 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 + + Q + +P L ++ Sbjct: 342 IKEVDQMIESLQKEIYRPAISCSPTENLPLNTTVQNIVKSVPNLSQSVE 390 >UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V2B2_SPHWW Length = 582 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 221/376 (58%), Gaps = 5/376 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ F +++GQ+ ++T LAN + GR+ HA+L +G RGVGKTS ARL+AK L Sbjct: 8 YRVLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKAL 67 Query: 63 NC-----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 NC + G T PCGVC+ C I +GR +D++E+DAAS T ++D R++++ V+YA Sbjct: 68 NCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREIIEAVRYASVS 127 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+K+Y+IDEVHMLS+ +FN LLKTLEEPP HVKFL ATT+ K+P+T+LSRC +F L+ Sbjct: 128 ARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRFDLRR 187 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + +++ +++ E + +P AL L+ARAAEGS RD LS+ DQAIA G G+V Q V Sbjct: 188 ITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIAHGSGRVEAQQV 247 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 MLG D L M++ + V+A I G+E A+L +L H I ++ Sbjct: 248 RDMLGLSDRGAVRRLFGEMLKGDAAAVLASIRGQYDLGVEPVAMLHGLLETCHAITRAKV 307 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + A + + +Q LL G E+ A EM LLR + Sbjct: 308 AGTDDPALSAEEREAYGDWAGKLGFATLHRLWQLLLKGHGEVQTAAMPIEAAEMALLRVV 367 Query: 358 AFHPRMPLPEPEVPRQ 373 E Sbjct: 368 HASQLPDPGELARRLA 383 >UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3S6_9BACT Length = 615 Score = 299 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 170/644 (26%), Positives = 269/644 (41%), Gaps = 39/644 (6%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS YQV+ARKWRPQ F DVVGQ+HV+ L N + R HAYLF G RGVGKT++AR+ A Sbjct: 1 MSEYQVIARKWRPQRFGDVVGQQHVVRTLENAIRQQRTAHAYLFVGPRGVGKTTLARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K +NC PC C++CR I + R +D++E+DAASR D R+L ++V P GR Sbjct: 61 KAMNCLDPQDGEPCCRCESCRAIAEERSLDVMEVDAASRNTTGDMRELAEDVLTQPVGGR 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ ++N LLKT+EEPP HVKF+ ATT+ ++ TI+SRC +F L + Sbjct: 121 YKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISRCQRFDLLPIP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQ 235 I +L I + E + A+ +ARAAEG +RDA SL DQ IA D ++ + Sbjct: 181 TRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFSQGDDTPITGE 240 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V ++ G D +L+ AM+ V+++++ A +G E L ++L + + + Sbjct: 241 QVLSLFGLTDRTDLDALMVAMLRNAPGEVVSIVSRLARKGKNLETLFDDLLEAMRAVQLC 300 Query: 296 QLSPAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + P R R+LA P IQ+ + + + L A ++++ +E L Sbjct: 301 AILPDPSDLIDEGEEAVARYRKLAALAKPDTIQILLEIIAPVGRVLHDALNKQVYLETIL 360 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 L+++ + + + + + A + P P PE + Sbjct: 361 LKSMREAHAVRIDDLLARLNQLRTAGELKFIDQLPPVVKRTEAAEIEPLKPQPEAPAPAP 420 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A + + A P A + + A+V P A E A Sbjct: 421 APAARATPPPAPQEPAPEPAATEVAPPPAAPAPMPQPAAVESAPAPVPPEPAPEPQAAPM 480 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 P + ++ A + + + E A Q Sbjct: 481 PVTAEPVPAPQLPEQAPAAPEPESEPVEPIRPLSAPSPEPPEEEPASPAPPAVERQPVPE 540 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDN 593 E A + L + Sbjct: 541 PAEEPEAEPEPAPPNQMPEVLA--------------------------------AQVTEE 568 Query: 594 PAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDE 637 + P ++ +A E + D I + F + + Sbjct: 569 SDLDAPGRKKRHSIANDNPKALEEAVNDPFIHEVVDLFGGSVVD 612 >UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=B0TVX0_FRAP2 Length = 551 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 170/363 (46%), Positives = 242/363 (66%), Gaps = 1/363 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSYQ LARK+RPQ+F++V GQ+H L +L + L ++HHAYLF+GTRGVGKT++ RLLAK Sbjct: 1 MSYQALARKYRPQSFSEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+TG+TA PC C+NC I F+DLIEIDAASRT VE+T+++LDN+QY P++GR+ Sbjct: 61 CLNCKTGVTAEPCNKCENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVYLIDEVHMLS+ SFNALLKTLEEPPE+VKF+LATTD K+PVTILSRC+Q HLK + Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 I+ QL+ +LN+E+I+ + ++L +A A+GSLRDALSL DQAI+ G++ + M Sbjct: 181 SDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLLDQAISFCSGELKQAQIKQM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D ++ +++EA++E N V+ + +A+L + + + + Sbjct: 241 LGIIDSEEVYNIIEAIIENNPSAVLPAVKNLTLTESNADAVLDRIAEIWFACCIYSFT-Q 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +L + ++ I YQ + +K++ AP GV M +LR +AF Sbjct: 300 SLDAINDIDIDIINKVLDKISIEQAHFLYQLTITAKKDISLAPSFETGVTMAVLRLIAFQ 359 Query: 361 PRM 363 + Sbjct: 360 KKN 362 >UniRef50_B7KMQ4 DNA polymerase III, subunits gamma and tau n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMQ4_CYAP7 Length = 452 Score = 298 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 217/399 (54%), Gaps = 6/399 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ K+RPQT D++GQ + T L N ++L +I AYLF+G+RG GKTS R+LAK Sbjct: 1 MNYQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG C++C+ I G +D+IE+DAAS E RD++ + Q+AP Sbjct: 61 SLNCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGR 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K+++IDE H LS + LLKTLEEPP +V F+L TTDP KL TI+SRC +F+ K Sbjct: 121 RYKIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRF 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + I +QLE I E I AL L+A+ ++G +RDA L +Q D V+ V Sbjct: 181 NNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSD-NVTPVEVH 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 +LGT+ +D L+ A+ + E ++ +I + A G + +L ++L + + Sbjct: 240 QLLGTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQLLEFYTNALITLEN 299 Query: 299 PAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + N + + R++ELA + + + Q L ++ ++ R+ +E+ +L L Sbjct: 300 PKSPLNTLTSTTTQRIKELA--LNSNTVLNHQQHLRSCETQIKFSRLPRVMLEVAILGLL 357 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 + +P +S + + TQV Sbjct: 358 VQPTEVKIPLSSNGTKSSPKTTVNSELIWTQVINLQTPT 396 >UniRef50_C1TQQ3 DNA polymerase III, subunit gamma/tau n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQQ3_9BACT Length = 554 Score = 298 bits (761), Expect = 6e-79, Method: Composition-based stats. Identities = 132/523 (25%), Positives = 218/523 (41%), Gaps = 4/523 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RPQTF DV GQ + + +S G + HAYLFSG RG GKT++ARL AK + Sbjct: 2 YLSLYRRYRPQTFQDVTGQNTAVEVVRRAVSRGNVGHAYLFSGPRGCGKTTVARLFAKAV 61 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC G PC VCD+CR I +G +D++EID AS +V++ RDL +V A +K Sbjct: 62 NCSDRGKGGEPCNVCDSCRSISEGNSLDVVEIDGASNNRVDEIRDLKTHVGLASFSSPYK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY++DEVHMLS +FNALLKTLEEPPE V F+LATT+P K+PVTI SRC ++ +E Sbjct: 122 VYIVDEVHMLSIGAFNALLKTLEEPPESVLFILATTEPFKVPVTIRSRCQHIPFHSIGLE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +L ++ E + + +L +AR A+G LRD LSL +QA+A D V V ++ Sbjct: 182 DMVSRLRYVTELEKVKCDDDSLWEIARQADGGLRDGLSLLEQAMAVQDDGVDLSVVERLV 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + ++ E + + RG E +L + + + + Sbjct: 242 GGGSHGELCRWLDGFHERGEMGTLKDLEGMFLRGASVERVLDGLYVIFRNLWIASRWGEK 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + + + + + + + R + Sbjct: 302 GIDALGLSPWESRFLTRTVGRWNEPFLRDMMELTSSLMPQGRRGLRQDVLIGILMTRLVP 361 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 + P V + PV+ ++ A + Sbjct: 362 SETPSSIKSPTVEPPNEEPVSAKPAPVSVPASDGEDPPLWSRFGDIPHIVSALAFCAISR 421 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 + + + N ++ + + + + + Sbjct: 422 SDDEMEVVVSPERVFCFELLSGERNAYIMQSVLNEDGWEGRVVFRCGDRERVYEPLSAPS 481 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 P+ +E K+ + KT ++ + + R Sbjct: 482 SQELPLEVDREDQRETVKEVKSTDVSKTEDIEVPDGDDGLLRA 524 >UniRef50_B3R066 DNA polymerase III n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R066_PHYMT Length = 580 Score = 297 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 110/342 (32%), Positives = 188/342 (54%), Gaps = 11/342 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY RK+RP+ F +VVGQ+ ++ L N + ++ H YLFSG +G GKT++A++ +K Sbjct: 1 MSYIAFYRKYRPKFFKNVVGQKIIIQTLRNAIIYKKLSHCYLFSGNKGTGKTTLAKIFSK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC CG C+ C I++ D+IEID AS VE+ RDL + + Y ++ Sbjct: 61 TINCLNNKDGDCCGYCEACNIIDKQNS-DIIEIDGASYNGVEEIRDLKNKINYKTNFLKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVH+L+ ++FNALLKTLEEPP+HV F+ ATT+ K+P TILSR FHL + Sbjct: 120 KIYIIDEVHVLTGNAFNALLKTLEEPPKHVIFIFATTESHKIPETILSRTQHFHLLNIQK 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I +L I++ E I+ + AL+ +A ++GSLRDAL+L DQ + ++ V + Sbjct: 180 QHIIEKLTEIVDLEKISIDKEALEKIAFYSQGSLRDALNLLDQISSYETDLITVTCVQEI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +++ + L++ + +++L+++ G L +++ +L + Sbjct: 240 KGAVEESNLIKLLQYTFNKDLNSIISLLDKINNEGKNILILFNDLIIILKNCLL------ 293 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 ++++ +TL+ ++ L + Sbjct: 294 EELLSPHDKKIKL----ENFSLELANYVLKTLIDYQQNLKNS 331 >UniRef50_Q83FL2 DNA polymerase III gamma and tau subunit n=2 Tax=Tropheryma whipplei RepID=Q83FL2_TROWT Length = 522 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 117/354 (33%), Positives = 189/354 (53%), Gaps = 5/354 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L R++RP+ F+++VGQ+ V L++ L R+ HAYLFSG RG GKT+ AR+ A+ Sbjct: 4 SEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARC 63 Query: 62 LNCETGITATPCGVCDNCREI--EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC G T++PCG C +C ++ +D+IEIDAAS V+D R L + +APA+ R Sbjct: 64 LNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRERAIFAPAQSR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 F+++++DE HM++ FNALLK +EEPP HVKF+ ATT+P+K+ TI SR + + Sbjct: 124 FRIFILDEAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRTFSYPFALVS 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + I N+E I E L L+ RA GS+RD LS+ DQ + ++ ++ Sbjct: 184 ASVMQPYIADICNKEKIRVEDGVLPLVVRAGGGSVRDTLSILDQLMV--GKCITYESTVG 241 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +L D L A+ E +G A I + G E + +++ + + + + Sbjct: 242 LLRLAPDILLYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCNA 301 Query: 300 AALGNDM-AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + R+ L++ D+ + L L R+ +E+ Sbjct: 302 EGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRLLLEIM 355 >UniRef50_D1AZL2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZL2_SULD5 Length = 546 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 148/408 (36%), Positives = 217/408 (53%), Gaps = 22/408 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M +QVLA K+RP +F ++GQE + L++ L+ R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MPHQVLALKYRPSSFDKLIGQEAITQTLSSALNQNRLSHAYLFSGLRGSGKTSTARIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G ATPC VC++C + R +D+IE+DAAS ++D R+L+++ +Y P+ RF Sbjct: 61 ALVCEQGPNATPCDVCEHCLSANENRHIDIIEMDAASNRGIDDIRELIESTKYKPSSARF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLTTQAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRVQHFRFKQIKQ 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + L HILN E I +E AL++L+RA GSLRD L+L DQAI G ++ + V+ M Sbjct: 181 SDVINHLCHILNLEKIEYEKEALEMLSRAGNGSLRDTLTLLDQAIIYSKGYITPEHVATM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG LD Q +L A++ N ++ LI E E ++ E++ L Sbjct: 241 LGLLDPKQLETLFSAILNGNKTELLGLIKTL--ESYECEVVMDELIAYLKNAFF------ 292 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 E R + +++ L + L + + + L + + Sbjct: 293 --------------EQDRRFSTLLYERFFKILSEAKSLLYINANNGFILSLVLFKMVEAT 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPET 408 + E ++ P + P T +P+ Sbjct: 339 HIKTIEEMIDSLENEKLQMPLHTPMQEEETAHPLLLETSMETAHVPDQ 386 >UniRef50_C0WHV4 Possible DNA polymerase III, gamma subunit and tau subunit n=3 Tax=Corynebacterium RepID=C0WHV4_9CORY Length = 904 Score = 296 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 154/610 (25%), Positives = 247/610 (40%), Gaps = 8/610 (1%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 GQE V T L+ L GRI+HAYLFSG RG GKTS AR++A+ LNCE G T+TPCG CD+C Sbjct: 2 GQEQVTTPLSAALDAGRINHAYLFSGPRGCGKTSSARIMARSLNCEHGPTSTPCGKCDSC 61 Query: 80 REIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + G +D+ E+DAAS VED R+L D YAPA R+++++IDE HM+S N Sbjct: 62 VSLAPGGPGNLDVTELDAASHNGVEDMRELRDRAYYAPAESRYRIFIIDEAHMISPSGAN 121 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLK +EEPPEHV F+ ATT+P+K+ TI SR + + L ++ L+ + E + Sbjct: 122 ALLKVVEEPPEHVIFIFATTEPEKIIGTIRSRTHHYPFRLLTPPAMKGLLQRTVASEGVQ 181 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 E ++ A GS RD LSL DQ +A +G ++ +LG D + + Sbjct: 182 VEDAVYPMVIEAGGGSPRDTLSLLDQLLAGAGPDGLTYDLARPLLGVTDVTLLDDTIATL 241 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA----LGNDMAAIELR 312 E + + A I+ G + V++L L + ++Q P A L + Sbjct: 242 AENDKAGLFAQIDNVIEAGHDPRRFAVDLLDRLRDLMILQAVPGAIDAGLVSAPTDRAEV 301 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPR 372 + A+ + T+ +L A R+ +E+ L P + Sbjct: 302 LTAQAQRFSGPQLTYLASTVNDRISDLTGATSPRLLLEIMCAHLLIGTSSGAAPGAALGA 361 Query: 373 QSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSE 432 S P A S P QA +Q Q Q A Sbjct: 362 ASQPGQLPQAAQPSGAPQSAQASQPNQAGQGAQSAQAAQSGQPGQSGQAAPSAGNGPAFS 421 Query: 433 PAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 A ++ A R S + Q P +A + ++ T + ++ Sbjct: 422 GAQDPQSAAAAIIARRRAKSQAQQNQPAPGSTAPAEPQQRQNQAATGPTGSEVPAQQSNQ 481 Query: 493 TPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAV 552 + +P +++ A A + +Q + EQ A A + + Sbjct: 482 AAAGTEAQSGQATSPSPSSQPEATAQQSRGEHEGPAQSAQATPAEQSAQPAPAAQHEQPA 541 Query: 553 CLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD-NPAVRTPLEWRQAIYEEKL 611 ++ + +Q++ + + + D + + Sbjct: 542 QTESTGAENQGRSELSQEQPSAEHAQSAQADWAGQAGPSDQVEKSERADGSGRPEQQSTD 601 Query: 612 AQARESIIAD 621 +Q+ + D Sbjct: 602 SQSSDVPEKD 611 >UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Tax=Helicobacter RepID=C5ZV42_9HELI Length = 586 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 151/593 (25%), Positives = 247/593 (41%), Gaps = 25/593 (4%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + + LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A Sbjct: 1 MEHNEALALKYRPMDFDELVGQESVSRTLSLALESKRLSHAYLFSGLRGSGKTSSARIFA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + L CE G A PCGVC NC R +D+IE+D AS K++D RDL++ +Y P Sbjct: 61 RALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNM 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 GR+K+++IDEVHML++ +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K Sbjct: 121 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKR 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + I L++IL++E+I ++ AL +L R+ GSLRD L+L DQ I + ++ + Sbjct: 181 ISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYNITADSC 240 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + MLG ++ L E + + + E ++ I + E E LL EM L Sbjct: 241 ANMLGLINPQSLNMLFEEIFKKDKESLLKHIEGFSEY--ECEMLLDEMAIFLKE------ 292 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 +R T I +++ + ++ L D + +++ + L Sbjct: 293 -------------KLLRGEDTRYSATIIDRFFRIITQAKELLSLGSDDSFVLTLSIFKML 339 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + + + + T + T+ Sbjct: 340 EALKIQEIDKAIETLEKGLTLPSKENQTKESKQTFENTPTNPTNTIKENPIKPLEETHTN 399 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 E+ + + KE + Sbjct: 400 HFTPTPNGADLFALLVQKIYERNFELGEIFEKNIHFVSYE-NGILVWETTAQDSDKERLK 458 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 T + + + K + E + + + S + Sbjct: 459 NSYTNIIKGFVLEIFGMQTQIKPIAKEPKISQTPLTNTQESIQKQEIQKASDSINTPNTK 518 Query: 538 QVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 590 N+ + N +++ + + + + + ++ G + + + Sbjct: 519 PQNTNSTESLELNTTLSTPKTTTQSAETQPTHKSIQDEVNEALGLPILQDVRQ 571 >UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK0_9BACL Length = 569 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 190/341 (55%), Gaps = 18/341 (5%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L RK+RPQTF D+VGQ H+++ L N + +I HAYLF G+RG GKTSIA++ A + Sbjct: 2 FQALYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEV 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 N I Q VD+IEIDAAS V++ RD+ + +++ P G++KV Sbjct: 62 NGNE---------------IYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKV 106 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHML+ +FNALLKTLEEPP HV F+LATT+ K+P TILSRC +F K L EQ Sbjct: 107 YIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFEFKNLSQEQ 166 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +L++I EE++ E A++ +A A+G LRDA+S+ DQ +++ + + Sbjct: 167 LIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYA-EEITLNHILEVTS 225 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ +D L +++ + + + NE A+ + + LL +++ + I + + Sbjct: 226 SISEDDILEFYRGLLQGDVTKSLLKYNEFVAQAKDTKLLLNDLINVTRDIVVYKNLKD-- 283 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 A ++ ++ + L + + ++ Sbjct: 284 TKHTAYNVEKIVTEIDSVSFDYFYKIIEYLSQTEQHIRFST 324 >UniRef50_B7KLR0 DNA polymerase III, subunits gamma and tau n=2 Tax=Cyanothece RepID=B7KLR0_CYAP7 Length = 462 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 194/389 (49%), Gaps = 4/389 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L K+RPQ F D++GQE + AL N ++ +I ++YLF+G RG GKTS AR+LAK Sbjct: 6 NYQPLHLKYRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTARILAKA 65 Query: 62 LNCETGITA--TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC++ + PCG C +C+ IE+G +++ EIDAAS V+D R L++ +AP GR Sbjct: 66 LNCKSTPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQSHFAPIDGR 125 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++V+++DE HML+ S NALLKT+EE P F+L TT+P KL TI SRC F+ K Sbjct: 126 YRVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFNFKNTS 185 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++ + L I +E+I P ++ +A A G LRD ++ ++++ V Sbjct: 186 LKTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLRD-GLQLLSGLSLLSCEITSDLVIK 244 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ-LS 298 L LV+ ++ ++ E G +++L + + +++ Sbjct: 245 ATNGLSPQTISQLVQKILTGQTLDLLIAGRELIEEGKTPQSILKSLTETYRDLLLLKSDF 304 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ +++LA + + Q L+ +L + + +E+ LL+ + Sbjct: 305 KCHTLISNSSNLTHLKQLADSTELEILDQGLQQLIQSEAQLKTNLNATVWLEICLLKLIP 364 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPT 387 P P Q + V Sbjct: 365 ATPIFLPPISNHNGQRKREQQQSEVSPSR 393 >UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteroidales RepID=C2MCK6_9PORP Length = 429 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 138/424 (32%), Positives = 210/424 (49%), Gaps = 5/424 (1%) Query: 1 MS--YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS + V ARK+RPQTF +++GQE + L + + G+I HAYLF G RGVGKTS AR+L Sbjct: 1 MSDNFIVSARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTSAARIL 60 Query: 59 AKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 A+ +NCE CGVC NC+ R ++ E+DAAS V+D R L ++V P + Sbjct: 61 ARTINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDVYIRPQQ 120 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++KVY+IDEVHMLS +FNA LKTLEEPP +V F+LATT+ K+ TILSRC + K Sbjct: 121 GKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKP 180 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQA 236 + EQI QL + + E + ++PR+ +AR A+G +RDALSL D+ + + DG +S + Sbjct: 181 IPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQDGVISYEQ 240 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 L LDD+ + + +R + L++E +G+ L++ + + + + + Sbjct: 241 TLQTLNILDDEYYFYFTTYLYSGDYKRTLLLLDELLGKGVAMRQLIIGLADFMRNLLVAR 300 Query: 297 LSPAALGNDMAA-IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 R LA+ I P + L+ + + +R+ VE+T + Sbjct: 301 TPETMQLFPYTGVHAERFATLAQQIHPLFLYKSISKLVSCERNYRSSQAKRLLVELTFMG 360 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 P + A P T S Sbjct: 361 ISEMCGAFKNATVAPPTAAPATPTPQESSVQAPQATYQAPPAATPKPSTAMPTPSAATPT 420 Query: 416 RQQL 419 + + Sbjct: 421 QDEK 424 >UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMU3_THEM4 Length = 460 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 187/320 (58%), Gaps = 4/320 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L RK+RP+ F ++VGQ HV N L I HAY+F+G RG GKT++AR+LAK LNCE Sbjct: 4 LYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCE 63 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PC +C+ C I++G F+D++E+DAAS +++ R + + V Y A+G++KVY+I Sbjct: 64 NPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGKYKVYII 123 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HML++ +FNALLKTLEEPP +V F+LATT+P+K+P TI+SRC K + + I Sbjct: 124 DEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDIIK 183 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +LE + E I A+ +++ A G LRDAL++ +Q I S + + V LG + Sbjct: 184 RLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRETLGLIP 243 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 D L+E + + + + LI+E G E L + + L I++V+ + + Sbjct: 244 DTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKL--ISLVEENNHNYIHF 301 Query: 306 MAAIELRMRELARTIPPTDI 325 + I ++++ I Sbjct: 302 LKPISEILKDI--KYSEEKI 319 >UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977980 Length = 562 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 151/550 (27%), Positives = 247/550 (44%), Gaps = 26/550 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LA K+RP +F+D+VGQ + L+ L I HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MSSIALALKYRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE+G +TPCG C +C + R +D+IE+DAAS ++D + L++ +Y P+ GR+ Sbjct: 61 ALECESGPISTPCGSCASCVAALENRHIDIIEMDAASSRGIDDIKKLIEQTKYRPSFGRY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ +FNALLKTLEEPPE VKF+LATTDP KLP TILSR F K + Sbjct: 121 KIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQIPH 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + + +ILN+E +++E AL+++AR+ GSLRD L+L DQAI + +VS M Sbjct: 181 RLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCKNHIEVASVSDM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG +D + ++ ++V ++ E E +L EM+ L Sbjct: 241 LGIVDPQVLKEYFQGILHHQHDKVSGILQVLYEY--ECEMILDEMMLFLK---------- 288 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + PP + + + L + L D + + ++ Sbjct: 289 ----------EKLLQRDSDFPPLLLDRFARILTESKSLLNLNTDGAFVLLLCAMKMQEAI 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + ++ A + + + Q P P SQ A + Q Sbjct: 339 KVKDIETMIEELENEIFGANQNKVLNSTSALSSLPSSPQNPQAPQTPADSQNPQAFESPQ 398 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + A + + +R A + + + + + Sbjct: 399 APAQTPSLDSQKTLGALHFQTLIQKITDRNAELGEIFEKNVKFVEFSREKSLLRWQ---- 454 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + + KE + + +L E + +D + P+ ++ Sbjct: 455 SVAQGEHKEKLREFGKIIVSLVREIFGANTHIEQVQDNIQDSNSQATQDSQSPQNLQNPQ 514 Query: 541 LNAWKEESDN 550 + + + + Sbjct: 515 AQSPQNQQEG 524 >UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium RepID=Q98BM8_RHILO Length = 604 Score = 294 bits (752), Expect = 6e-78, Method: Composition-based stats. Identities = 156/461 (33%), Positives = 238/461 (51%), Gaps = 6/461 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP F+++VGQE ++ L N + GRI A++ +G RGVGKT+ AR+LA+ Sbjct: 18 AYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARA 77 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN +T P ++C+ I +GR VD+IE+DAAS T ++D RD+++ V+YAP Sbjct: 78 LNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVS 137 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FN LLKTLEEPP HVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 138 ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 197 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +D + L I +E I+ + AL ++ARAAEGS RD+LS+ DQAIA G G VS +AV Sbjct: 198 IDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGAGAVSAEAV 257 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 AMLG D + + L E +++ + +A G + A+L ++ H + ++ Sbjct: 258 RAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEFNHLVTRLRF 317 Query: 298 SPAALGND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 P A+ + R + AR + + +Q LL G E+ + EM L+R Sbjct: 318 VPTAMDDASLSQDERQRGADFARALSVRVLSRTWQMLLKGIPEVQSSNRPVSAAEMVLIR 377 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L E A V A A + S Sbjct: 378 LAHAADLPTLDEALRSLDGAATVQNGASRPNGAPGGPGNGGGAGAVAQTRMPSGSSGAQT 437 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 + ++ + + + + +A + Sbjct: 438 MRLVEAAPALAAFVAPPAPVSEPQQVPVRSLADIVALADAQ 478 >UniRef50_Q0SN45 DNA polymerase III, subunits gamma and tau n=28 Tax=Borrelia RepID=Q0SN45_BORAP Length = 566 Score = 294 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 204/378 (53%), Gaps = 1/378 (0%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 A K RP+ F + GQ+ V+ L + + +I +AY+FSG RGVGKTS AR A+ LNC+ Sbjct: 8 ALKKRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCKN 67 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G T PCG C NC+ IE +D+IEID AS T V+D R + + + + PA ++++Y+ID Sbjct: 68 GPTVMPCGECSNCKSIESDSSLDVIEIDGASNTSVQDIRQIKEEIMFPPAISKYRIYIID 127 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNALLKT+EEPP ++ F+ ATT+ KLP TI SRC F K L +E+I + Sbjct: 128 EVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLSLEKIYNM 187 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L+ + E+HI +E AL+ +A + GS+RDA +L DQ ++ + + + + +G +D Sbjct: 188 LKKVCFEDHIKYEDEALKWIAYKSSGSVRDAYTLFDQVVSFTNSDIKLDQIRSKMGFTND 247 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 + L +++ + + ++ +++ G+ +E L++ + +++ Sbjct: 248 EFLEKLSVSILSEDVKELICILDSIFLAGVSYEQFLLDSIEFFREALFLKIGIKNFEFIG 307 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 +R+ ++ LL ++L ++ + R +E+ ++ L +P Sbjct: 308 IK-SEDLRKKLIEFDLNYLERIIVVLLETYRDLQFSINPRYELEINFIKILRLKNYIPNH 366 Query: 367 EPEVPRQSFAPVAPTAVM 384 Q+ + Sbjct: 367 VLIKQIQNIEDNLLEDMA 384 >UniRef50_B2ICM3 DNA polymerase III, subunits gamma and tau n=3 Tax=Rhizobiales RepID=B2ICM3_BEII9 Length = 651 Score = 294 bits (751), Expect = 9e-78, Method: Composition-based stats. Identities = 181/656 (27%), Positives = 288/656 (43%), Gaps = 54/656 (8%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y VLARK+RP F D++GQE ++ L+N L RIH AYL +G RGVGKT+ AR+LA+ Sbjct: 29 YLVLARKYRPSRFEDLIGQEAMVKTLSNAFDLDRIHQAYLLTGVRGVGKTTTARILARAF 88 Query: 63 NCETG-ITATPCGVCD---------NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 N E P +C+ I + R VD+IE+DAAS T ++D R+++++ + Sbjct: 89 NYEVPAENGQPAIEKPTVHMDRFGVHCQAIIESRHVDIIEMDAASHTGIDDIREIIESAR 148 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 Y P R KVY+IDEVHMLS+ +FN LLKTLEEPPEHVKF+ ATT+ K+P+T+ SRC + Sbjct: 149 YRPVSARVKVYIIDEVHMLSKQAFNGLLKTLEEPPEHVKFIFATTEIDKVPITVRSRCQR 208 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 F L+ ++ + L + +E++ E AL L+ARAAEGS+RDALSL DQAIA G GQ Sbjct: 209 FDLRRIEPAVLIDYLASVCAKENVLIEREALGLIARAAEGSVRDALSLLDQAIAHGTGQA 268 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 +S + AMLG D + + L EA++ + + +A + G + +LV Sbjct: 269 DPHSSAQPISATDLQAMLGLADRARIIDLFEAVMRGDMAKALADLKNLHDCGADPAQVLV 328 Query: 284 EMLGLLHRIAMVQLSPAALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 E+ +H + ++LSP R +A T+ + +Q L G +E+ + Sbjct: 329 ELAEFVHFVTRLKLSPHTFDAAATPEELSRGGAMAGTLSVMVLTRAWQILTKGLQEVKDS 388 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 P +M L+R P + V + + Sbjct: 389 PRPLACADMVLVRLAYAADLPTPDVVLRQLAKTPPSPHGRDGSTDAVSGSRVQPSLPSAS 448 Query: 403 VPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPV 462 P + + Q A+ +A + + A RL S V Sbjct: 449 GPSLGSPLVTSSRLGAQAATQAASHMAPLAVSAPSLQPGLAQAPAIRLQSFGALVALAGE 508 Query: 463 PSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDP 522 ++ A + R + + + E AI + Sbjct: 509 KRDIQLKTALERDVRLVRFEEGTIEFALAPGASPQLAQTLMRRLQEWTGTRWMVAIASET 568 Query: 523 WAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582 + + L+L + E+ A + + + + +ALS G+ Sbjct: 569 -SGGAAALTLKEQAEKQAAAVRQGIEADPL-------------------VRKALSQFPGA 608 Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEE 638 + + + ++ PA E A +S +D+++ F E+DE+ Sbjct: 609 QI-IAVRPNEAPATV----------PEDQPFAADSAESDDDV-AFPDQF--EMDED 650 >UniRef50_A5CF91 DNA polymerase III gamma and tau chains n=3 Tax=Rickettsieae RepID=A5CF91_ORITB Length = 559 Score = 294 bits (751), Expect = 9e-78, Method: Composition-based stats. Identities = 131/420 (31%), Positives = 218/420 (51%), Gaps = 14/420 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y V ARK+RP+T +++GQE + L + G + AYL SG RGVGKT+ AR++A Sbjct: 7 NYVVWARKYRPKTMCELIGQEVLTKVLTYSMITGCLSQAYLLSGIRGVGKTTAARIIATT 66 Query: 62 LNCETGITAT----PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +NC + + C C++C +E D+ EIDAASRT V+D R ++D+ +Y P Sbjct: 67 INCLQPVVTSKTIFACTKCNSCIAMENNSHPDINEIDAASRTGVDDVRTIIDDSEYKPLI 126 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++K+++IDEVHMLS+ +FNALLK LEEPP H F+ ATT+ K+P+T++SRC +F L+ Sbjct: 127 SKYKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQKFDLRR 186 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG------- 230 LD+ I L +I+ +E+++ L+ +A A+GS RDA+SL +QA A Sbjct: 187 LDINNIVQILSNIIAKENVSATKEILEFIAVKADGSARDAVSLLEQARALAQNIADTASS 246 Query: 231 ---QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +S V M G L + L+ A+ E N E+ + ++ + G ++ +L Sbjct: 247 DVVVISLNTVEQMCGVLCLGKLTDLLSAIAEQNAEKGINIVTDLYISGTDFIVCSQNILD 306 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 L+ + V+ + A+ + L+ + + + + +Q +EL + + R+ Sbjct: 307 LIGYLIKVKTIDGYTESIYASHNNILNSLSMKLSLSRLTVLWQIFSKSIQELKISHNTRL 366 Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 E+ +++A+ + Q+ A T V P P+S P L Sbjct: 367 CFEVVVIKAIYSFSLPTPIDALRQLQNELTDAKTNVDNAANSPAVPESLPASMNKYELQS 426 >UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHM0_KOSOT Length = 503 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 126/392 (32%), Positives = 203/392 (51%), Gaps = 25/392 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ +VL RK+RP+ F ++VGQ+ V L + I HAY+F G RG GKT+ AR+LAK Sbjct: 4 MA-EVLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAK 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC + PCG C++C ++ +D+IEIDAAS +++ R + D Y P G + Sbjct: 63 ALNCLSHDD-KPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHY 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DE HML+R +FNALLKTLEEPPEH+ F+LATT+ +K+P TILSRC F K L Sbjct: 122 KVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSE 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI L+ IL EE + AL+++A+AA+G +RDA++L ++A+ G ++ V + Sbjct: 182 GQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFG-EKIEEDNVKNI 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L ++ S + A++ + + ++AL G ++++ + + L + Sbjct: 241 LGILPEEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQSIELTKDMISR----- 295 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 R + + L +E+ Y+ ++++ E+ L LA Sbjct: 296 -----------------RELEFERGVKLIEKLWEVNREMRYSENKKLTFEVLSLTTLAAM 338 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 + + + Sbjct: 339 NVPSVSVEPAKAVNAVVKEEVKKSNEEKEVEP 370 >UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=Lactobacillus RepID=Q1G919_LACDA Length = 607 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 148/486 (30%), Positives = 234/486 (48%), Gaps = 6/486 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L RKWRP+TF DVVGQE + L N L G++ HA+LF+G RG GKTS A++ AK Sbjct: 1 MAYQALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC PC C NC +QG D+IE+DAAS V++ RDLLD V YAP G++ Sbjct: 61 ALNCLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP V F+LATT+ QK+P TI+SR +++ K Sbjct: 121 KVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + ++E+IL +E + +E +AL+++A+ A+G +RDALS+ DQ ++ V + + Sbjct: 181 EAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEV 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +Q L+ A++ + + + L A G + +L E++ L + + + Sbjct: 241 TGFAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQ 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +E+A+ P L + +++ +E+ L++A Sbjct: 301 GEFLT----DDFAQEIAQQ-SPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQASQ-K 354 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + P+V + P + + Q QQ P + + + Q Sbjct: 355 RQNSQAGPQVASAASNPAIERQIKVLKEQVHQLTQQVQQLSQRPSQAFSPRHVFQLNQQL 414 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 Q + ++ AA + + + A + + Sbjct: 415 YTQKGGATEVAQQAAEKQQQAESLQAEITSSQEEIYAVLSQATKPGLAEARNLWDRDLPS 474 Query: 481 TTPVMQ 486 Sbjct: 475 MLEEPA 480 >UniRef50_A8ERI6 DNA polymerase III, gamma and tau subunits n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERI6_ARCB4 Length = 643 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 155/602 (25%), Positives = 252/602 (41%), Gaps = 46/602 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VLA K+RP+ F D++GQ + L+ L R+ HAYLFSG RG GKTS AR++AK L Sbjct: 9 RVLALKYRPKRFEDLIGQSTISQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIMAKALL 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T+ PC +CDNC+ + +D+IE+DAAS ++D +DL+++ +Y P+ RFKV+ Sbjct: 69 CSQGPTSKPCDICDNCKSANASKHLDIIEMDAASNRGIDDIKDLIEHTKYKPSSARFKVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ +FNALLKTLEEPP VKF+LATTDP KLP TILSR F + + Sbjct: 129 IIDEVHMLTTQAFNALLKTLEEPPGFVKFILATTDPLKLPATILSRTQHFRFNKIAQSDV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 H L +ILN+E+I E AL++LAR+ +GSLRD L+L DQAI G+V+T +V MLG Sbjct: 189 VHHLSYILNKENIDFEQNALEILARSGQGSLRDTLTLLDQAIIFSKGKVNTTSVVDMLGL 248 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++ ++ E + L+ E E + EM L + + + L Sbjct: 249 IDPKMMDNIFSMILNK--EDITKLVKEL--EVYEVSQICDEMTIYLKDKMLSRDNKFDLL 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +++ L ++ L D + +T ++ + Sbjct: 305 LFD--------------------RFFRILSDAKQLLAINSDGTFVLILTFMKMIEATNLR 344 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + P T + ++++ + + Sbjct: 345 TIDDIINQVEKIEPKKELISEKTTPIIESSLVKN--------------PEIPQKEVIKEK 390 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 T + E + + + Sbjct: 391 VNTLIVEEETKIEEVTALDEVLIQTNNIIDLGITNSIETINYSTPFDELPITKPIENQKE 450 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 ++ + + E P ++ E D + +QL+ +L Sbjct: 451 EKIEEIKELEIEHISFESEVSFNPTQEVEIIPLEDESDKFLDLYNQLTAKVYDRDYSLGE 510 Query: 544 WKEE--------SDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 E+ D + + + + GS VEL +++ Sbjct: 511 CFEKNFIFNGFSDDKLHIISYAQDEDRKLLFKYFGLIKAFAQDIFGSNVELDFKKEEATI 570 Query: 596 VR 597 + Sbjct: 571 LE 572 >UniRef50_D2S640 DNA polymerase III, subunits gamma and tau n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S640_9ACTO Length = 765 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 161/591 (27%), Positives = 232/591 (39%), Gaps = 33/591 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RP TFA+VVGQEHV L N + GRI+HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRKYRPATFAEVVGQEHVTAPLVNAVDGGRINHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T+TPCG C +C + +D+IEIDAAS V+D RDL + +AP Sbjct: 60 SLNCEQGPTSTPCGTCGSCVALAPDGPGSLDVIEIDAASHGGVDDARDLRERAFFAPVNS 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFKVY+IDE HM++ FNALLK +EEPPE + F+ ATT+P K+ TI SR + + + Sbjct: 120 RFKVYIIDEAHMVTTQGFNALLKVVEEPPEFLVFVFATTEPDKVLSTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 +R LE E + EP L+ RA GS+RD+LS+ DQ +A + V+ ++ Sbjct: 180 PPTTLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEGVTYKSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +LG DD ++A+ + V ++ G + ++L L + ++ Sbjct: 240 VGLLGVTDDALLDETIDALAAHDAPGVFRAVDRVVEAGHDPRRFATDLLDRLRDLILLDA 299 Query: 298 SPAA------LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 P A L + M A + + T+ G E+ R+ +E+ Sbjct: 300 VPDAGGNGNGLLDCPPDRLDLMSSQASALGSATLSRMADTVHAGLTEMRGTTGPRLLLEL 359 Query: 352 TLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP-----QSAPQQAPTVPLP 406 R L + A + +P + P Sbjct: 360 VCARMLLPGTDGSAAATLQRLERLERRMSIAGEHAGRPVAEPAVLGAPVRESRPEPAAAP 419 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 Q ++ R S PAA + P R A A Sbjct: 420 PPADQPGRPVREFVRRSQVAAQAPSVPAAPAQPAPRPAPEPPRAAPERPEPPRPEPARAE 479 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKAL------------------KKALEHEKTPE 508 A W TTP A + E Sbjct: 480 PVAARPPADDGWPETTPPGSGAPPRPPAPAATPPTPAATPPAAAPAAVGEPRRAPVAVGE 539 Query: 509 LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS 559 L E + + W + +V S + Sbjct: 540 PDIPLPPEPTDDEDWPHPAQPAAAAAAAARVEQPRPTASSAPRAAAESSPA 590 >UniRef50_A2C5C3 DNA polymerase, gamma and tau subunits n=3 Tax=Prochlorococcus marinus RepID=A2C5C3_PROM1 Length = 565 Score = 293 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 5/418 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+ L K+RP +F ++VGQ+ + + L L RI AY+FSG RG GKTS AR+ AK Sbjct: 4 TYEPLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKS 63 Query: 62 LNCETGITAT--PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC AT PCG C+ C+ I G +D+IEIDAAS T VE+ R+L++ ++APA+ R Sbjct: 64 LNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRFAPAKAR 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS +FNALLKTLEEPP V F+LATTDPQ++ TILSRC++F + + Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIA 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + L I +E I A+ L+A+ ++G LRDA SL DQ ++ + Sbjct: 184 LHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLL-PPPITQLNIIN 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS- 298 ++G + +++ + L ++++ + ++ + N +G E A+L + +L + + +++ Sbjct: 243 LIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVTN 302 Query: 299 -PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P L N + +LA + I L + + + +E+ LL L Sbjct: 303 KPTNLCNISREHSESLNDLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIHLLGML 362 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 + E + + ++ + Sbjct: 363 TDEVSKENNKIEQSLVKTKISDNSESKNTNNTSNRIVPNTEKEQIKTTAFLDETKTSP 420 >UniRef50_B6BKU4 DNA polymerase III gamma and tau subunits DnaX n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKU4_9PROT Length = 585 Score = 293 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 216/434 (49%), Gaps = 22/434 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S +VLARK+RP F +++GQ+ + L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 4 SSEVLARKYRPSNFDELIGQDTIAQTLSLALDSNRLSHAYLFSGLRGSGKTSTARIFAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L CE G++ PCGVC NC+ + R +D++E+DAAS K++D RDL++ +Y PA RFK Sbjct: 64 LICEQGMSHEPCGVCQNCKLAVENRHMDIVEMDAASSRKIDDIRDLIEQTKYRPASARFK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +++IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP TILSR F K++ + Sbjct: 124 IFIIDEVHMLTKEAFNALLKTLEEPPAYVKFILATTDPLKLPATILSRTQHFRFKSIATK 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I L HILN E I +E AL++LAR+ GSLRD L+L DQAI V V+ ML Sbjct: 184 KIIDHLAHILNLEEIKYETDALEILARSGNGSLRDTLTLLDQAIIYSKNHVDVNTVTDML 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G +D + L A+ + ++ E E ++ E++ L Sbjct: 244 GLVDPKFIMDLFSAVFAKDYASLVQYTKILEDY--EAEMVVDELIAYLK----------- 290 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 RM + +++ L + D + + + + Sbjct: 291 ---------ERMYNQDALFSTLVLDRFFRILSDSKSLFSINADGSFVLSLIFFKMVEALR 341 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + Q + + + A + V E+ + ++ Sbjct: 342 IKEVDQMIESLQKEIKRPEISSINIEPLKRVQVEAVEPQDQVASTESIQEYYQEEDEMLH 401 Query: 422 VQGATKAKKSEPAA 435 + + E Sbjct: 402 QETHIPEPQPEMPN 415 >UniRef50_D1B9W0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9W0_THEAS Length = 580 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 155/533 (29%), Positives = 227/533 (42%), Gaps = 9/533 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP F+++ GQ V+ AL L GRI HA+LFSG RG GKTS ARLLAK L Sbjct: 2 YLSLYRKYRPSRFSEISGQRGVVEALVGSLRSGRIPHAFLFSGPRGCGKTSAARLLAKRL 61 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC + CG C NC I++G +D++EID AS +E+ R L D V AP + K Sbjct: 62 NCASPAEDGESCGTCVNCEAIQRGGHLDVVEIDGASNRGIEEIRSLKDQVALAPFQAPNK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML+ +FNALLKTLEEPP V F+LATT+PQK+PVTI SRC+ F + + E Sbjct: 122 VYIIDEVHMLTEAAFNALLKTLEEPPSRVYFVLATTEPQKVPVTIRSRCVHFPFQRISTE 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ H++ E I E +AL LAR+A+G+LRDALSL +QAI+ G G V+T A+ +L Sbjct: 182 DIKDRISHVVQMEGIEAEDQALWELARSADGALRDALSLLEQAISVGGGMVTTAAMEGIL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA- 300 G + V + E + + + G E + + L + V Sbjct: 242 GGFSRESLQRWVRQLRE-DPPGAFQGLAQIVRGGSNLERISEGLFLLFRDLLFVGRWGEG 300 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++ + A +++ TL + V + Sbjct: 301 VLSALGISSSEGAFLLSEAPNWDLGVLEVLCATLSELMPRTRQGMRSDVFVGLLQCGIDG 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV---PPQPQSAPQQAPTVPLPETTSQVLAA 415 R P A + MT Q Q P++ + + Sbjct: 361 ALGRAGSSPPASRAPKAGHEAHRSAMTAPQTVVVAQTEGKPGQIDPSIAVEDKPDTPSEP 420 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 E + + NAA+ +A+ + + Sbjct: 421 SLAGSETPKGRPLDGGERFSVFQHLADVNAAVACVAAHCRILVGEEGVHVSVPEDPLISS 480 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVS 528 + + M V +T L E + + W Sbjct: 481 ILSQWRSMDMILDAVRSTL-GLPPGELPPGVCEEDPPKEDKDLPSGRWCRMAE 532 >UniRef50_Q83VB4 Putative DNA polymerase III n=1 Tax=Western X phytoplasma RepID=Q83VB4_9MOLU Length = 579 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 124/425 (29%), Positives = 210/425 (49%), Gaps = 10/425 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK RP+ F +VGQE V+ L N + L +IHH YL SG +GVGKT++A++LAK Sbjct: 1 MSYLVLYRKHRPKNFDGMVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC+ C C+ C + Q +D+IEID AS V++ R+L D VQY P ++ Sbjct: 61 AINCQNPQGQDCCNECEFCLVVHQKANLDVIEIDGASYNGVDEIRELKDTVQYKPHLLKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+LS ++FNALLK LEEPP +V F+L T++ K+P TILSR FHL L Sbjct: 121 KVYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTD 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I+ +L I+ EE I AL +A ++GS+RDAL+L D+ + + + + M Sbjct: 181 EEIKTKLNPIVEEEKILITDEALTTIAAYSDGSMRDALNLLDKISSYKINLIEKKDIEKM 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG + + + L E +V+ + +++A + ++ L +++ ++ + ++ Sbjct: 241 LGVISESKINQLAEYLVQPDINQMIAFLELILKPNVQISPFLDDLIDFFQKLLLEHVTNP 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L R + + +++ LLI ++ + + P ++ + + ++ Sbjct: 301 QEN----------TNLFRLLTNSKRNEFFEILLILKQNIIHFPTKKNSLILNFIKIHNLF 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + P ++ + Sbjct: 351 FDKNIIIKKTSIAAKNTNTVVKNHNWNNNVSYSNNDLPCTKKEPQKSYLAKKKEIVTEEA 410 Query: 421 RVQGA 425 Sbjct: 411 IESEN 415 >UniRef50_A3VPV6 DNA polymerase III subunits gamma and tau n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VPV6_9PROT Length = 607 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 175/652 (26%), Positives = 277/652 (42%), Gaps = 80/652 (12%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RPQ+F D++G E ++ L N + RI HA++ +G RGVGKT+ AR++A+ L Sbjct: 14 YRVLARKYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARAL 73 Query: 63 NCETGITATPCG----VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N ET P +CR I + R D+ E+DAASRT V D R+L++ V+YAP G Sbjct: 74 NYETETIDRPTVDMPVEGRHCRAIAESRHPDVYEMDAASRTGVGDIRELIEGVRYAPIEG 133 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS ++FNALLKTLEEPP HVKF+ ATT+ +K+PVT+LSRC +F L+ Sbjct: 134 RYKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRF 193 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 237 D+ + L I +E A AL ++A+AAEGS+RDALSL DQA+ G+ + + Sbjct: 194 DITSLSAHLAGIAEKEEAAISKEALDMIAQAAEGSVRDALSLLDQALVQKAGEAIGAADI 253 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI---AM 294 MLG +D Q L+ A + + + + L E G + ++ ++L L H + + Sbjct: 254 RDMLGLVDRTQTWDLLGAAMAGDAKTALRLFREQYDGGADAGQVMRDLLSLTHLLTRTLV 313 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 AA G A R + +A +P + + L+ +E+ APD Sbjct: 314 AGDEAAAHGQAGEADTERAQAMAHGVPLPALTRSWSLLMKALEEVQNAPD---------- 363 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 + A + +A P+ +Q Sbjct: 364 -------------------AAAAAEIGLIRVAYAAGQPTPEEALKALGQAAPQAAAQAAP 404 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 Q A +A S A T A + + AP + Sbjct: 405 QAAPQAAPQAAPQAAPSAERAPTGAATGPQGSWSPTGGQVAVAVNAAPDAGPHTAPDPAQ 464 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 + P++ + + IE A ++ + Sbjct: 465 PSPERPARPML----------------------TAPSPAPSPTIETLDDIAALAGVKRDA 502 Query: 535 LVEQVALNA--WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 592 + + + + + + +L +AL G ++I D Sbjct: 503 RLREEIETCLIPVHLETGRLDVAVTEAAPKDLTG----RLGQALKAWTGRPWIVSI-VAD 557 Query: 593 NPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRPI 643 V T + ++I A+ + F A + ++RP+ Sbjct: 558 PGEVPTI-----------RGRRNQAIKANPVVNAALSAFPKARI--AAVRPL 596 >UniRef50_A6QBX8 DNA polymerase III, gamma/tau subunits n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QBX8_SULNB Length = 666 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 158/547 (28%), Positives = 257/547 (46%), Gaps = 36/547 (6%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP TF D++GQ+ V L+ L R+ HAYLFSG RG GKTS AR+ AK Sbjct: 1 MS-LALARKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAK 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L CE G T+ PCG C +C + R +D+IE+DAAS ++D +DL+++ +Y P+ R+ Sbjct: 60 ALLCEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIEHTKYKPSSARY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHML+ +FNALLKTLEEPP+ VKF+LATTDP KLP TILSR F K + Sbjct: 120 KIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIPQ 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LEHI+N E I +E AL+++AR+ GSLRD+L+L DQAI V V+ M Sbjct: 180 NLVLSHLEHIMNLEKIEYEKEALEIIARSGAGSLRDSLTLLDQAIVYSKNFVDVGTVTGM 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ +L+ +V+ + +++ I A E E +L Sbjct: 240 LGIIEPSLLEALLGNIVKKDTTKILEFIK--LASDYEAEMILD----------------- 280 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + + + P I+ +++ + + L D + + L + + Sbjct: 281 ---ELTLYLKELLLTGSGKLNPMIIERFFRVIAESKSLLALGSDGEFVLSLALFKMMEAL 337 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + ++ S + VP T S+V+ ++ Sbjct: 338 EIKDIDTMIRGLE-------------KELKGVEVSEIMVSTPVPDLSTPSEVITITEEDI 384 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 T++ + +A + + T + Q RP + AP + Sbjct: 385 LTPSQTESVQRSAFSAEKEEETTEPLPKTSPENTIKEQNRPEETVGRGAPTPTMKPDKQT 444 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + ++E + + +A + ++ ++ A + A + +L Sbjct: 445 VSEETTEQEQKSPETPVTEAPKAKEETQITAAPSLNAQRSTLNTDKFKELVSKIYDRNYE 504 Query: 541 LNAWKEE 547 L + E Sbjct: 505 LGSCFER 511 >UniRef50_Q4FNB0 DNA-directed DNA polymerase gamma/tau subunit n=3 Tax=Candidatus Pelagibacter RepID=Q4FNB0_PELUB Length = 557 Score = 292 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 127/397 (31%), Positives = 218/397 (54%), Gaps = 7/397 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + +VLA K+RPQTF D++GQ+ V ++N + ++ +AYLF+G RG+GKT+ AR++AK Sbjct: 4 NTKVLALKYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKS 63 Query: 62 LNCETGITATPCGV-CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC GI C+NC I +D++E+DAAS+T V+D RDL++ +Y P ++ Sbjct: 64 LNCSNGIDNLCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIEFSRYGPTTAKY 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDEVHMLS+ +FNALLKTLEEPPE++KF+ ATT+ +K+P+T++SRC +F L + Sbjct: 124 KIFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKS 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVS 238 ++ + I +E+ AL+L+ + +EGS+RDALSL D+A+ + D ++ A Sbjct: 184 LELFDFIRKIKEKENGNASDDALKLIVKISEGSVRDALSLLDRALLTLDKDKELDLAAAQ 243 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE---MLGLLHRIAMV 295 + G D Q + L E + E V+ E +G+E + + + +L I + Sbjct: 244 KIFGYFDKSQLIDLFELIFEGKETEVLNTYREIYNQGVEPKIFINDFLELLYYFKNIDSL 303 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 L ++++L+ + + L++Q + +EL ++ + +EM L+R Sbjct: 304 NLDGNNFLL-NDEEFNKIKDLSEKVNNETLILFWQFTIKTLEELDIVSNQHLSMEMFLIR 362 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 + E + + + Sbjct: 363 LIHLKSIKQESEKYKEDSKLLVESENQTSFSPKKTNE 399 >UniRef50_Q4A6Z5 DNA polymerase III gamma and tau subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z5_MYCS5 Length = 609 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 190/313 (60%), Gaps = 7/313 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RPQ F +++GQ+H++ L N +S +I HA+LF+G +G GKTS AR+ AK Sbjct: 1 MKYKSLYRKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAK 60 Query: 61 GLNCETGI-TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + C C N D+IE+DAAS T V++ R+L +NV P + Sbjct: 61 ALNCSHSEVRSQICESCPN------QNSGDIIEMDAASNTGVDEIRNLKENVDQLPFESK 114 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y+IDEVHMLS+ +FNALLKTLEEPP +V F+LATTD QK+P+TILSR F+ + + Sbjct: 115 YKIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRIS 174 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +QI QLE+ILN+E+I+ E AL L+A+ + G LRDAL++ +Q + ++ ++V Sbjct: 175 EKQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRK 234 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 G +D+ + ++ + N V+ +N+ GI+ ++ ++ L+ + + + Sbjct: 235 NFGIASNDEIIQVLNDLYSKNISDVLKKLNDLKLWGIDPFLFVLNLISLVKEYLLFRKTG 294 Query: 300 AALGNDMAAIELR 312 + + + Sbjct: 295 DDSFLNYYSEKEL 307 >UniRef50_Q0ASK9 DNA polymerase III, tau subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0ASK9_MARMM Length = 606 Score = 291 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 263/581 (45%), Gaps = 14/581 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQVLARK+RP TF D++GQ+ ++ L N + GRI HAY+ +G RGVGKT+ ARL+A+ L Sbjct: 32 YQVLARKYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARAL 91 Query: 63 NCETGITATPC----GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 N +T P +C I + VD++E+DAASRT V D R++L+ V+YAP Sbjct: 92 NFQTDGIDAPSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIREILEGVRYAPVSA 151 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDEVHMLS +FNALLKTLEEPPEH KF+ ATT+ +K+PVT+LSRC +F LK + Sbjct: 152 RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRI 211 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG---DGQVSTQ 235 D E + L+ I E + E L L+ARAAEGS+RDALSL DQAI G DG VS Sbjct: 212 DREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLLDQAIVQGSDEDGPVSAP 271 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + MLG D + L L+E + +A ++ G + + ++L +H A V Sbjct: 272 QIRDMLGLADHARVLDLLEQTLTGKTADALAELSSLHDAGGDPVVITRDLLDYVHATARV 331 Query: 296 Q-LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + P A + A R+ LA + ++ LL G ++ APD + + Sbjct: 332 KAAGPGADLGEAADTVARIVTLAEGQTLGQLTRMWKILLTGLDDVRNAPD---ALAAAEM 388 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 L LP PE + A + + P A A Sbjct: 389 TVLRLASAASLPPPEDAARLLAGMPRATSPASGAGEAPGKPEPAPASATGSASAAMDRDA 448 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKE 474 A + A + + A A A ++ L D V + A K Sbjct: 449 AAHRALSAPEAVAQVE-QDAPAISGPQTWEALMDLLREKRDIGLQSDVERYVRPAVFKPG 507 Query: 475 AYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPK 534 ++ ++ + + + L+ E + E + +L Sbjct: 508 SFTFQPIEDAPRDLAQRLSRRLLEWTGERWMILADGSLEGGETWSERRLRLKAERLE--A 565 Query: 535 LVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEA 575 A+ A + +R Q A Sbjct: 566 ARHDPAVTEVMRLFPGAEIVKIRDPQPTAETDTDATTEKRA 606 >UniRef50_Q8EUW0 DNA polymerase III gamma-tau subunits n=1 Tax=Mycoplasma penetrans RepID=Q8EUW0_MYCPE Length = 804 Score = 291 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 119/475 (25%), Positives = 235/475 (49%), Gaps = 12/475 (2%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M+ RK+RP +F +++GQ+ ++ L+N + + HAY+FSG +GVGKTSIA++ + Sbjct: 1 MNNKIAFYRKYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFS 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 K LNC C C+NC I Q + VD++E+DAAS V + R+++D + Y P+ + Sbjct: 61 KVLNCLNLKDGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVLK 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HMLS ++N LK +E+PP+++ F+ ATT+ K P TI+SRC +++ L+ Sbjct: 121 YKVYIIDEAHMLSNAAWNTFLKLIEDPPKYLVFIFATTESYKFPPTIISRCQRYNFLKLN 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +++ L+ I +E I E AL +A A+GSLRDA SL DQ + + + + + Sbjct: 181 NSELKECLKSIAKKEKIKVEDNALNKIAELADGSLRDACSLIDQLDSYTNSDIKIEDIYN 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G LD ++ ++L++++ +N E+++ INE +GI++ L ++++ LL+ + + + Sbjct: 241 VFGILDVNEKINLLKSVWNSNVEQIINKINEYEVKGIDFYQLSIDLINLLYDKLVYERTK 300 Query: 300 A-ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +L + + + EL P I + ++ + + + +++ + Sbjct: 301 NVSLLKYLPSEQTNFLEL----QPKFIIKCLEVWQDNLNKIKTSSNPKFYFQLSCFESCK 356 Query: 359 FHPRMPLPEPEV------PRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 V + + + + P E ++ Sbjct: 357 LFEFEFDTNLTANSYVVKNETELKEQLEQKVKPTKKETVKVELTEKNKPDKLKEEIKAEE 416 Query: 413 LAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALE 467 + + + K + E + P+ + + + +++ ++ + E Sbjct: 417 IKVKPSKKEEIVEEKVIEQEKENNSAQEPILDTSNFKQVKLSESMKVVQIKGKPE 471 >UniRef50_Q2NK09 DNA polymerase III, gamma/tau subunit n=3 Tax=Candidatus Phytoplasma asteris RepID=Q2NK09_AYWBP Length = 653 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 127/485 (26%), Positives = 222/485 (45%), Gaps = 13/485 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VL RK+RPQTFADVVGQE ++ L N + +I+H YLFSG +G GKT++A++ AK Sbjct: 1 MSYLVLYRKYRPQTFADVVGQEIIIQTLKNAIRYQKINHCYLFSGNKGTGKTTLAKIFAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC + I C C+ D+ EID AS V++ R+L D QY G++ Sbjct: 61 AINCLSPIQGEAFCSCHFCQNFA-KANTDITEIDGASYNGVDEIRELQDKAQYKAHAGKY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVH+L+ ++FNALLK LEEPPEHV F+L TT+ K+P TI SR F + L++ Sbjct: 120 KVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIFSRSQSFAFENLNL 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I QL I E++ A++ +A +EG +R+ALSL DQ A + ++++ V+ + Sbjct: 180 KNITAQLTKIAALENMFITEDAIKSIAYHSEGGMRNALSLLDQVSAYQNNLITSEDVANI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ L + +++ + + L++++ G + L+++++ + + Sbjct: 240 KGTVSASVIKKLFQNLLKKEATKTLQLLHKSIDSGKNIDILILDLIDAIKDYLICNAKNK 299 Query: 301 ALGNDMAAIELRMRELARTI----PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 A+ I I + +TL+ +++L + ++ VE+ L+ Sbjct: 300 KYSKTSQ------LSQAQKILLLEETNHIDHFLRTLIKLQQDLKKSDQKKSLVEIAFLQI 353 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAAR 416 + H + + +Q + + +A + P ++ Sbjct: 354 CSLHSFQFQADLQEFQQFVTNKTKISNNNQALLELDETNAEEHY--EPTKPIQKKLENPP 411 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAY 476 + + + + + P++ Sbjct: 412 FYKTEEIKSIQFTPIANKKTPKIEKIEYLHSTLKDLQPQNNSTISELTQQNNLPSQNSLG 471 Query: 477 RWKAT 481 T Sbjct: 472 TKSPT 476 >UniRef50_B3PM34 DNA polymerase III subunits gamma and tau n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM34_MYCA5 Length = 647 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 133/409 (32%), Positives = 208/409 (50%), Gaps = 13/409 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L R++RP F +V GQE+++ L N + + +I HAYLF G G GKTS+A++ A L Sbjct: 5 YLALYRQYRPNKFDEVKGQENIIRTLTNIIKMQKISHAYLFCGPHGTGKTSVAKIFANTL 64 Query: 63 NCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C R +D+IEIDAAS T ++D R+L + +++ P ++K Sbjct: 65 NCSHSSDLLEPCQECIE----NIDRNLDIIEIDAASNTGIDDIRELREKIKHLPTHSKYK 120 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS+ +FNALLKTLEEPP+H F+LATTDPQK+P+TILSR +F+ K +D Sbjct: 121 IYIIDEVHMLSKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTILSRVQRFNFKRIDEN 180 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVSAM 240 I L H+ ++EHI +E AL+L+A A GS RDALSL DQ I + + +++ V ++ Sbjct: 181 VIVMHLMHVYDQEHIDYEKNALKLIASLANGSFRDALSLADQVSIFATNSKITLVEVESL 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ + L+ M N + V+ + + G + E L+ +M+ +L + + Sbjct: 241 FGLINLKNVIDLINLMASHNIKEVLQKLGKLIDAGADIERLVTQMINVLKDFLVYSRTED 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR----RMGVEMTLLRA 356 A +++ + I + L+ KEL Y+ +G Sbjct: 301 AALLEISDVTDL---QTLKISIDKTYEFISELVNLLKELKYSDLPLQTLELGFIKMATLK 357 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 + ++ P P P + + V Sbjct: 358 THDENFVNEIVMPKAKEISPQTTPMKDFEIDVEPNSPTPKKRMSQNVEK 406 >UniRef50_Q601S8 DNA polymerase III gamma-tau subunits n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601S8_MYCH2 Length = 726 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 213/404 (52%), Gaps = 8/404 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y RK+RP+ F+D+VGQ+ +L +L N + G HAYLFSG G GKT++A++ A + Sbjct: 12 YIAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAI 71 Query: 63 NCETGIT-ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C +D+IE+DAAS V++ R++++N P +K Sbjct: 72 NCTHKTDLIEPCQNCI----KNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQISPYK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y++DEVHMLS +FNA LKTLEEPP+H+ F+LATT+ K+P+TILSR +++ AL + Sbjct: 128 IYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALKED 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I H+LE IL +E I +E AL+ + ++GSLRDA+S+ +Q G G V+ + ++ + Sbjct: 188 EICHRLEFILEKEKIKYEKNALKSVFLLSQGSLRDAISILEQVATFGSGYVNQKNINELF 247 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G ++ + ++ V A+ A+ + ++ + + + ++ L ++ L+ + + + Sbjct: 248 GLVNKEILVNFVNALFLADSKISYEILEQISFQSKNFQLFLESLINLVKEWIIWKSTKTN 307 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + + L I + + K++ +A + + +E+ ++R L+ Sbjct: 308 ELLEFYSNFD-LENL--KISQDFAFKFLEIAFSSLKDINFADFQNLTLEIFIMRILSLSN 364 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 + + + + P ++ + + + P Sbjct: 365 LEISDQNNIKFKKIEENKVDKIDIPEKITEKVSEKVSEIKSTPT 408 >UniRef50_D1J7N2 DNA polymerase III subunit gamma and tau n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7N2_MYCHP Length = 667 Score = 288 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 120/391 (30%), Positives = 204/391 (52%), Gaps = 11/391 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP+ F D+ GQ+H++ L N + ++ HAYLF G G GKTS A++ A + Sbjct: 7 YLALYRKYRPKIFDDIKGQDHIVITLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTI 66 Query: 63 NCETGITA--TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC + PC C R +D+IEIDAAS T ++D R+L + +++ P + ++ Sbjct: 67 NCLHNQSDILKPCEECI----KNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHMLS+ +FNALLKT+E+PP H+ F+LATTDPQK+P TILSR +F+ K + + Sbjct: 123 KIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTI 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSA 239 E + QL+ I N+E+I +E A+ ++A+ GSLRD+LS+ D + + + V Sbjct: 183 ETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G ++ D + L+ M + + + L E ++GI+ L+ +++ +L + + Sbjct: 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTR 302 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 ++ ++ I Y +TL+ + + E+ LL+ F Sbjct: 303 DQSL-VSTDFKILLQI---KIDDVKAHYYIETLIDQLHSIAISDSPEDYFEILLLKLCNF 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 + + + + Sbjct: 359 LSPKEEYKNSAVMPKISNEEFNNFNSQEKQA 389 >UniRef50_B5ZAS2 DNA polymerase III subunits gamma and tau n=15 Tax=Ureaplasma RepID=B5ZAS2_UREU1 Length = 603 Score = 288 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 199/405 (49%), Gaps = 4/405 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L RK+RP F DV+GQ + AL N + HAY+FSG RG+GKTSIAR+ A Sbjct: 1 MSELTLYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAA 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC C C C+ I + VDLIE+DAAS V+ R++ DN+ Y P ++ Sbjct: 61 SINCLKPNNGDCCEECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINYLPTLFKY 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDE HMLS ++NALLKT+EEPP+HV F+ ATT+ QK+P+TI+SRC ++ L+ Sbjct: 121 KVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNN 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +++ ++ + +E I A+ L + A+G+ RD LS+ DQ + + ++ Sbjct: 181 SELQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVT-NQKVIDIDLINKT 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G +D+ + ++L+E + + + + I E GI EA +++ +L + Q + Sbjct: 240 FGLVDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTND 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +I+ + L+ + + L + ++ E+ L + + + Sbjct: 300 ETNLKKISIDELKKILSINFNANHL---LNNFISLYSHLKNSVNQVFEFEIYLYKIVNVN 356 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 + +P + T +P S Sbjct: 357 NDKLETKKTIPLIAIEKDKNTLPPSPPIAKTTSISKEVNKVNENK 401 >UniRef50_C0R4F2 DNA polymerase III, gamma/tau subunit n=16 Tax=Wolbachia RepID=C0R4F2_WOLWR Length = 533 Score = 288 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 131/407 (32%), Positives = 215/407 (52%), Gaps = 2/407 (0%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 A K RP +F D+VGQ+ ++ L N L +I + L SG+ GVGKT+ AR++A LNC Sbjct: 4 ALKHRPSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCSL 63 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G PCG C+NC I+ D+IEIDAAS T ++D + +L ++ Y+P +FKVY+ID Sbjct: 64 GPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKVYIID 123 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 EVHMLS +FNALLKTLEEPP VKF+LATT+ +K+P+TI++RC +F L + V +I + Sbjct: 124 EVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQRFDLHNIPVAKIVER 183 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLGTLD 245 L + +E + E AL+L+AR + S+R+AL L +QA+ DG +ST+ V+ +LG +D Sbjct: 184 LNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYSKDGAISTKNVTDILGLVD 243 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 D L+ A++E + ++ +++ ++A ++ +L + + ++ Sbjct: 244 KDIIFDLLGAILEGDLQKALSVFDKAVKT-ANPLSIFEGLLQTIQLVCRFLITKEIDNAV 302 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + R+++L+ ++ LL G +++ + + EM L+ Sbjct: 303 TEHEKNRIKDLSIKRSLIFFSRLWKMLLKGIQDIKTSTCNDVAAEMMLISLCYLSDLPSP 362 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412 + S P P + E+ Q Sbjct: 363 EQVIKKVLSQNVEQGNRQGRPVAPSPSVIQVADYSDPKKYVESKQQP 409 >UniRef50_Q53M12 ATPase, AAA family protein n=2 Tax=Oryza sativa Japonica Group RepID=Q53M12_ORYSJ Length = 1121 Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 208/457 (45%), Gaps = 4/457 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L++K+RP++F ++VGQ V+ +L N + RI AYLF G RG GKTS AR+ + L Sbjct: 334 QRSLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAAL 393 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 +C PCG C C + G ++LIE+DA++R + R L++N+ + R+KV Sbjct: 394 SCVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKV 453 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++DE HM+S ++A +K L+EP V F+ T DP+ LP ++SRC ++ + Sbjct: 454 FVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDID 513 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ ++G Sbjct: 514 IVCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLVG 572 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + +++ L L+E + A+ + E G++ AL+ ++ GL+ I A Sbjct: 573 VVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADP 632 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 I R A +Q + L K++ + +R LL+ + H Sbjct: 633 TCGGEGIGGRNITDAE---LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNS 689 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + +QS + + + +A +T A+ + Sbjct: 690 EMIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTASGHSSPQG 749 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQA 459 + ++ + + + ++ Sbjct: 750 VVSVSSRMRANDNLKHGECRSVDRVLQDSAQRSNSSE 786 >UniRef50_A7ZDZ3 DNA polymerase III subunit tau n=18 Tax=Campylobacter RepID=A7ZDZ3_CAMC1 Length = 554 Score = 287 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 172/580 (29%), Positives = 269/580 (46%), Gaps = 32/580 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+ F +++GQE V +L + L R+ HAYLFSG RG GKTS AR+ AK L Sbjct: 2 QALALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALV 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G T+ PC VC C + R +D+IE+DAAS K++D R+L++ +YAP R+K++ Sbjct: 62 CEKGPTSRPCEVCAQCVMANESRHMDIIEMDAASHRKIDDIRELIEQTKYAPTAARYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + +I Sbjct: 122 IIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHFRFKQISRYEI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL++E +++E AL++LAR+ GSLRD L+L DQAI G G ++ +V+AMLG Sbjct: 182 VKHLEFILSKEGVSYEREALEILARSGGGSLRDTLTLLDQAIIYGAGNITKSSVAAMLGL 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++E + A+ + L+ E E E ++ E+L L + Sbjct: 242 LDPSRIEQIIEHVANADKNAIRVLVTELETY--EPEMIIDEILANLKQ------------ 287 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 R + + +++ L + L + D + + L + Sbjct: 288 --------RFLDNDPKFSLLIYERFFRILAQAKSMLSVSSDNGFVLMLMLFMMIEALNLQ 339 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E + VA P+ + Q P+T + A+ + + Sbjct: 340 DIDEAIKLAKIEPSVAVI--------EPKAGMSEQILAVKEAPKTPYEQFVAKIYDRSFE 391 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 K + + + ++ V + K+ A T Sbjct: 392 LGEIFKNHISFSFLNENELGLIVNATGDELAFFKKSWGVMHEILHTIFGKKIKIVNAKTQ 451 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + K TP + E+A A + E+ A ++ L V +A Sbjct: 452 ISAPKPEPQTPPQEPQDKYSYLDDEIAKIKARQQNEQKDEPASKPEVVLETRVNTLAQPQ 511 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGST 583 + + + L S L + + + EA + L G Sbjct: 512 -NDFAKELMSLSQSKSPEELKKQREEGVIKEA-NRLFGQP 549 >UniRef50_B0B7Q2 DNA polymerase III subunit gamma/tau n=15 Tax=Chlamydiaceae RepID=B0B7Q2_CHLT2 Length = 466 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 142/453 (31%), Positives = 219/453 (48%), Gaps = 13/453 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQV +R++RP F++++GQ+ V++ L N L L R HAY+FSG RG GKT++AR+ AK Sbjct: 3 SYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKA 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ PC C C+EI G +D+IEID AS +ED R + + V + P++ R+ Sbjct: 63 LNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y+IDEVHML++ +FN+LLKTLEEPP HVKF LATT+ K+P TI SRC + LK + Sbjct: 123 KIYIIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRISE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I +L I +E AL +A+AA+GSLRDA SL D + + + + Sbjct: 183 ETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKA 242 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG L +D L EA+ N E+ + +++A G+ L ++ L + Q S Sbjct: 243 LGILSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYS-- 300 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + +A + L + + A + +E ++R L + Sbjct: 301 ----------KQFHSVATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIY 350 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 R + + AP + T +++ P +A Q Sbjct: 351 SRPTFSQLVSQIRQPAPTQIRPIPTASELESCPPQIKSSNTEETKSSPQPTAVAKLSQGS 410 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASV 453 + A+ K E P + ++ Sbjct: 411 LLTAASSQTKKETIHQETPPPSLDKISPSESAA 443 >UniRef50_D1AJH2 DNA polymerase III, subunits gamma and tau n=2 Tax=Fusobacteriaceae RepID=D1AJH2_SEBTE Length = 496 Score = 286 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 203/402 (50%), Gaps = 24/402 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQ H++ A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFEEIAGQGHIVKAIRNSLKENKLSHAYLFNGPRGVGKTTIARLIAK 59 Query: 61 GLNC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G+NC GI+ PCG CDNCREI G +D++EIDAAS +++ R+L + + Y P G Sbjct: 60 GVNCLTNGISDHPCGTCDNCREIAAGISMDMVEIDAASNRGIDEIRELKEKINYQPVNGN 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 KVY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ L+ Sbjct: 120 KKVYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEVDKIPDTVISRCQRYDFLPLN 179 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVS 238 + I L+ + +E+I + +L+L+ R +EGS RD+ S+ +Q + ++ + Sbjct: 180 MNDIIEMLKMVAEKENIKIDEESLKLIYRKSEGSARDSFSIFEQVASNFSGEEIDIEKTQ 239 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 LG + D + + + + +++ GI E L + L Sbjct: 240 TALGVIPDKLLNEFLTVVSNGDKIGGIDFVDKLWEDGILIENFLKDFSYFLKENL----- 294 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + +I + E Y D+R+ + + Sbjct: 295 ----------------KREDSIGIDRTLSLISVIYFVLGEFRYEEDKRLLGYVLINEIFK 338 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + E ++ + P ++AP + Sbjct: 339 QEAPVVITEVRQEYKAAESAPKSTQEIPAGNTQIQETAPSPS 380 >UniRef50_A6DD60 DNA polymerase III subunits gamma and tau n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DD60_9PROT Length = 487 Score = 286 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 127/391 (32%), Positives = 216/391 (55%), Gaps = 24/391 (6%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 VLA K+RP+ F +++GQ+ ++ L N L+ RI +AYLFSG RG GKT+ AR+ +K L C Sbjct: 2 VLALKYRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQC 61 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E GI+++PC C++C+ + R +D+IE+DAAS K+ED R+L+++ +Y P+ RFK+++ Sbjct: 62 EKGISSSPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIEHTKYKPSISRFKIFI 121 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 IDEVHML+ +FNALLKTLEEPPE+VKF++ATTDP KLP TILSR F + ++I Sbjct: 122 IDEVHMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIE 181 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L+ +L +E++ E AL+L+ ++A+GS+RD+L+L DQAIA + ++ V MLG + Sbjct: 182 SFLQKVLIKENVKFEDEALRLIVKSAKGSVRDSLTLLDQAIAYSNYNITLDKVVEMLGVI 241 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + + + + + + ++ +I + IE + + L Sbjct: 242 NPEIISKIFKLIFDGDKKEIIEIIKQIKDYDIESIIDEIIL--YLKEAMFY--------- 290 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 +P +Q ++ + ++ + Y D + + R + Sbjct: 291 -------------GNLPLITMQRFFNIISDTKELIKYQNDNEFILSLMFFRMIEATKPHK 337 Query: 365 LPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + + + + + P P+ Sbjct: 338 IDDLIKSFEQSININSYQIKKVDIQKPNPEE 368 >UniRef50_Q8ZSE1 DNA polymerase III gamma and tau subunits n=2 Tax=Nostocaceae RepID=Q8ZSE1_ANASP Length = 429 Score = 285 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 130/429 (30%), Positives = 218/429 (50%), Gaps = 6/429 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L K+RPQ ++V+GQEH++ L N ++ +I AYLFSG +G GKTS AR++AK L Sbjct: 2 YRPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSL 61 Query: 63 NCE--TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC+ T PCG C++C+ I VD+ E+DAAS + VE R+L+ Q+AP RF Sbjct: 62 NCQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRF 121 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+++IDE H LS S+ ALLKT+E PP HV F+ TT+ K+P TI+SRC +F K + V Sbjct: 122 KIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPV 181 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + LE I ++E I P A+ +A+A +G LRD+L L DQ G+ +++ V + Sbjct: 182 SLVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWEL 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 GT+ + L++ E +++ + ++ + G + A+ ++ L + + + +P Sbjct: 242 SGTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTNPN 301 Query: 301 --ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L + +++ I+ L+ R+ L D + +E TL+ + Sbjct: 302 GRHLTQLEQDTWEELVSISQLWNIDQIRNAIAILM-ARQSLMRDEDAHLWLEATLIEIVP 360 Query: 359 FHPRMPLPEPEVPRQSFAPVAP-TAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 + +P ++ P Q Q Q+ + + + V A ++ Sbjct: 361 TNKGSHQSQPWKDWKTAQDAINWGKEQLPHLTQAQLQEHWQKLTPINGKKAPAWVEAVQK 420 Query: 418 QLQRVQGAT 426 Q+ Sbjct: 421 LQQKQLQQA 429 >UniRef50_C3KSA4 DNA polymerase III, subunits gamma and tau n=4 Tax=Clostridium botulinum RepID=C3KSA4_CLOB6 Length = 472 Score = 285 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 202/351 (57%), Gaps = 5/351 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP+ F DVVGQ L N + G I HAYLF G RG GKT+ AR+ AK +N + Sbjct: 2 LYLKYRPRFFKDVVGQGENTKILLNQIRTGHIGHAYLFCGNRGSGKTTTARIFAKAVN-Q 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 P + ++I+ G +D++E+DAAS +ED R++++ QYAP+ +++V++I Sbjct: 61 HNKNGEPLDNELS-KKIDAGNCIDIVELDAASHNGIEDIRNIIEQAQYAPSECKYRVFII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS + NA LK LEEPP++V F+LATTDPQKLP+T+LSRC +F K +DV I + Sbjct: 120 DEVHMLSISAVNAFLKVLEEPPKNVIFILATTDPQKLPITVLSRCQRFDFKRIDVTDIFN 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L++I E I + ++L+L++ A+G++RDA+S+ DQ +++ V+ +LG + Sbjct: 180 RLKYICEHEKIKIDNKSLKLISIVADGAMRDAISILDQVRTM--EEITYSNVTTLLGIMI 237 Query: 246 DDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 ++ ++ ++++ + + LIN+ + L+ ++ + ++ ++P Sbjct: 238 EEDIRNIAFSIIKKDTISALQLINKAVMQNKKDANQLMKDLQKYFRNVLVLAINPKTEIA 297 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + M L + + ++ Y + L + Y + +E+ ++ Sbjct: 298 TIEEEKQVMINLGKQVHKENLIKYIELLQEKINDSKYTYNNLTLLEVAVIE 348 >UniRef50_Q03ZG9 DNA polymerase III, gamma/tau subunit n=2 Tax=Leuconostoc mesenteroides RepID=Q03ZG9_LEUMM Length = 575 Score = 285 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 148/588 (25%), Positives = 259/588 (44%), Gaps = 26/588 (4%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +YQ L R +RP++F D+VGQ+ + L N ++ + HAYLFSG RG GKTS A++ A+ Sbjct: 4 AYQALYRVYRPRSFDDMVGQKIITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFARE 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +N T + D+IEIDAAS V++ R++ D YAP +K Sbjct: 64 VNGIAPETDDS-------------QIPDIIEIDAASNNGVDEIRNIRDGANYAPIESEYK 110 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 +Y+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+P TILSR +F K +D + Sbjct: 111 IYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRIDND 170 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ ++ IL +E I+ + AL ++A AEG +RDALS+ DQ +A G V+ + + Sbjct: 171 TIQARMAEILQKEGISFDDDALHIIANVAEGGMRDALSILDQVLAFGADHVTLENALQVT 230 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G+ Q ++ ++ + + E + +++ G + + ++LG+L + + +++P Sbjct: 231 GSTTASQLVTYLQQVSNYDTESALQTLHDILLEGKDAVRFVADLLGVLRDVMLAEVAPN- 289 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 A ++ L + + IQ TL +K+L + +E+ ++ P Sbjct: 290 -LIKTTAPLADLKALTIKLGTSRIQQMMVTLDDIQKQLLQTMQSDVYLELLTVKLSMPEP 348 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 +P + + + ++ P E T + A + + Sbjct: 349 EQTVPAKQSSNVIKEKPQNIDDIVK---ASKNTEVHEEQVVEPAIEKTPVEVPAVENAEY 405 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + ++ A A + A + A Q A+ A Sbjct: 406 EDLLVRTGQNAVFAVLIAAKRDALARVKNAWSDLLRQFNVTQQAMLTIAEPVAASEQAVV 465 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEA-IERDPW----AAQVSQLSLPKLV 536 + + + + I +D W A+ V++L + Sbjct: 466 LAFDYPVLLEQALHDATLQNHLVQQLQSQNLPSELVFISQDEWTSDRASYVNKLKTGETP 525 Query: 537 EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV 584 + + + ++ N + ++ Q N K+ L G + Sbjct: 526 QIQLEDVPRVKAANLSAIPTKTPQESSNKE---LKIVSEAKELFGEDL 570 >UniRef50_B1M6N3 DNA polymerase III, subunits gamma and tau n=6 Tax=Alphaproteobacteria RepID=B1M6N3_METRJ Length = 637 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 172/611 (28%), Positives = 268/611 (43%), Gaps = 17/611 (2%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+VLARK+RP F D++GQ+ ++ LANG + RI A++ +G RGVGKT+ AR+LA+GL Sbjct: 27 YRVLARKYRPTNFGDLIGQDAMVRTLANGFAANRIPQAWMLTGVRGVGKTTTARILARGL 86 Query: 63 NC------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 N +TG T + + +C I + R +D++E+DAAS T ++D R ++D ++Y P Sbjct: 87 NYARAGQPDTGPTVSMPELGLHCAAIMESRHMDVLEMDAASHTGIDDVRAIIDGIRYGPV 146 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY++DEVHMLS +FNA LKTLEEPP H KF+ ATT+ +K+PVTILSRC +F L+ Sbjct: 147 SARYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSRCQRFDLR 206 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 ++ + L + E + E AL + RAAEGS+RDALSL DQAIA G G ++ Q+ Sbjct: 207 RVEAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGSVRDALSLLDQAIAHGAGTITAQS 266 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V MLG D + L L EA++ + A + G + +L ++ H + ++ Sbjct: 267 VRDMLGLADRARILDLFEAVMRGSVPAAFAELRAQYDSGADPSVVLSDLAAFTHLVTRLK 326 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + P A + + R+R A + + +Q LL E+ AP EM ++ Sbjct: 327 VVPEAAADPTLSETERVRGAAFADKLSIRALSRAWQILLKAIPEVQAAPRPLAAAEMAIV 386 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQ-QAPTVPLPETTSQVL 413 R E ++ A AP P P + + Sbjct: 387 RLAYAADLPTPDEALRQLRAEAAAAPADEAPAVSARPPLPPIPDLRGGGSAALAAAPRTA 446 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 AA A + A+ + PV A + + A A + Sbjct: 447 AADTAPVAAPVAAPVAVNATASVAMSAPVAAPAPRPAPVAPPTPRLGRFEDLIALADANR 506 Query: 474 EAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLP 533 + A + + A + A E W +S+ Sbjct: 507 DILLRTALERDVHLVRFEEGRMEFRLASGGRSSLATDIAAAIERWTGRRWVVALSKDEGA 566 Query: 534 KLV--------EQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVE 585 + E NA + V ++ A + L A + G Sbjct: 567 PTLDAAARAATETRRENAAADPFVREVLTRFPGAEIVDVRETAPEALPSAEQEILGEGDA 626 Query: 586 LTIVEDDNPAV 596 + E ++ Sbjct: 627 ARVGEVEDDDA 637 >UniRef50_Q0C591 DNA polymerase III, subunits gamma and tau n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C591_HYPNA Length = 578 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 175/538 (32%), Positives = 249/538 (46%), Gaps = 20/538 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y+VLARK+RP+ F D++GQE ++ L+N GRI H ++ +G RGVGKT+ ARLLA+G Sbjct: 28 TYEVLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARG 87 Query: 62 LNCETG------------ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109 LN E + ++C I R D++E+DAASRT V D RDLLD Sbjct: 88 LNYEPKADAKGKKGKAAGPSIHLDPPGEHCDAIMASRHPDVLELDAASRTGVADMRDLLD 147 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 + +Y P R+KVY+IDEVHMLS SFNALLKTLEEPP H+KF+ ATT+ +K+PVT+LSR Sbjct: 148 SARYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSR 207 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG- 228 C +F LK LD ++ L ++ E AL L+ARAAEGS+RD LSL DQ I Sbjct: 208 CQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQTT 267 Query: 229 -DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +VS AV AMLG D + L VE V + + +A + E A G + +L ++L Sbjct: 268 DGEEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDILD 327 Query: 288 LLHRIAMVQLSPAALGNDMA-AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 + I++ Q + R R LA+ + P +Q LL G +L APD Sbjct: 328 IAADISVAQATGDDWTQAGPADWANRTRALAQRLTPAQAARNWQLLLSGYGDLQVAPDPA 387 Query: 347 MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 + M +LR A E + P P A + + Sbjct: 388 TALNMVILRLAAASTLPSPEEAARMIAEGSRPPGKDNPPLKAPPQAPGGIESFADMIAIM 447 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN-----NAALERLASVTDRVQARP 461 +V + V+ + A P LE + + V+ Sbjct: 448 VAAREVGLQVDTERFVRPSHFEPGKLACALAPGAPQGLLGRLKIFLETYSDLDWSVEEAD 507 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + + ++E + + L+ E PEL E Sbjct: 508 TDTESVRERERREKAERIESAKQDPRVAAALALIPGAIILDVEDPPELLEMEGGEGDV 565 >UniRef50_C3MC56 DNA polymerase III, subunits gamma and tau n=80 Tax=Alphaproteobacteria RepID=C3MC56_RHISN Length = 645 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 159/463 (34%), Positives = 229/463 (49%), Gaps = 7/463 (1%) Query: 2 SYQVLARKWRPQTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 +Y+VLARK+RP+ F+D+ VGQE ++ L N GRI AY+ +G RGVGKT+ AR+LA+ Sbjct: 39 AYRVLARKYRPKDFSDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILAR 98 Query: 61 GLNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LN +T P ++C+ I GR VD+IE+DAAS T ++D R++++ V+Y P Sbjct: 99 ALNYKTAEIDKPTIDLRIPGEHCQAIMDGRHVDVIEMDAASHTGIDDIREIIEQVRYRPV 158 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KVY+IDEVHMLS +FN LLKTLEEPPEHVKF+ ATT+ +K+P+T+LSRC +F L+ Sbjct: 159 SARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 218 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + ILN+E + EP AL ++ARAAEGS RD LSL DQAIA G G V + Sbjct: 219 RISASDLVGLFSTILNKEAVRFEPEALAMVARAAEGSARDGLSLLDQAIAHGGGSVEMET 278 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V +MLG D + + L E +V+ + + G +L ++ H + ++ Sbjct: 279 VRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMK 338 Query: 297 LSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 P A + + R R E A ++ T + +Q LL G E + EM L+ Sbjct: 339 YVPEAANDQSFSEIERRRGAEFAGSVAVTTLSRIWQMLLKGIPEAESSARPAGAAEMVLI 398 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLA 414 R E + A P + V Sbjct: 399 RLAHAAHLPSPEEAARRLLELSGGEAGDGRPAPARTSGNTQAQAGQPVQARSVEAAPVQR 458 Query: 415 ARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRV 457 + A ++P R A A V Sbjct: 459 PSANGATMLRAVPDVAAQPITVGRIEDRPAQAPAAKAEPKVPV 501 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 85/356 (23%), Gaps = 34/356 (9%) Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRK---------ELPYAPDRRMGVEMTLLRALAF 359 +R + I ++ ++ G + + + + Sbjct: 275 EMETVRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLV 334 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS---APQQAPTVPLPETTSQVLAAR 416 +PE + V S + AA Sbjct: 335 TRMKYVPEAANDQSFSEIERRRGAEFAGSVAVTTLSRIWQMLLKGIPEAESSARPAGAAE 394 Query: 417 QQLQRVQGATKAKKSEPAAATRARPVNNAALERLASV-------TDRVQARPVPSALEKA 469 L R+ A E AA A + + + ++E A Sbjct: 395 MVLIRLAHAAHLPSPEEAARRLLELSGGEAGDGRPAPARTSGNTQAQAGQPVQARSVEAA 454 Query: 470 PAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD--PWAAQV 527 P ++ + + + + A D A+ Sbjct: 455 PVQRPSANGATMLRAVPDVAAQPITVGRIEDRPAQAPAAKAEPKVPVNSVGDIADLCAKN 514 Query: 528 SQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELT 587 + L LV + ++L +LA L G + Sbjct: 515 RDIKLKTLVRGFLR--LVHIEPGRLDVNLSDDAPKTL----LNELAVKLKEWTG--IHWV 566 Query: 588 IVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFF-DAELDEESIRP 642 + P T +E Q E+++ AR+ D ++ + F A + + IR Sbjct: 567 VSYSREPGEPTLVEAEQRAQEQRVNDARQ----DPDVAAILARFPGARITDVRIRA 618 >UniRef50_D0RR32 DNA polymerase III subunit gamma/tau n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR32_9RICK Length = 553 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 127/403 (31%), Positives = 227/403 (56%), Gaps = 8/403 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + LA ++RPQ F +++GQ+ ++ ++ N + L RI +AYL +G RG GKT+ AR++AK Sbjct: 4 NRKPLALRYRPQKFQELIGQDSMVISIQNAIKLKRIPNAYLLTGIRGTGKTTTARIIAKA 63 Query: 62 LNCETGITAT---PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC+ + G +C I +D++E+DAAS+T ++D R++L+ +Y P+ Sbjct: 64 INCKVDFASDQKCSEGDFCHCESITNSNHIDILEMDAASKTGIDDIREILEASKYHPSTA 123 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 +KV++IDEVHMLS+ +FNALLKTLEEPP H+KF+LATT+ +K+PVTILSRC +F L+ + Sbjct: 124 EYKVFIIDEVHMLSKQAFNALLKTLEEPPPHLKFILATTEVKKIPVTILSRCQRFDLRRI 183 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASGDGQVSTQ 235 VE+++ L I ++E + +L L+++++EGS+RDALS+ DQAI +V+ Sbjct: 184 KVEEMKSFLRKICDKEEADVDENSLTLMSKSSEGSVRDALSILDQAIITYNLMGEKVTED 243 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG DD + + L+ +VE N E+ + + E G + + +L +L + + + Sbjct: 244 KVRTMLGLADDTKIVDLMSYIVEGNIEKSINAVEEIFDIGADPKLVLHSLLDVCYLMTRT 303 Query: 296 QLSP--AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + R+ + + + T + + + L+ G ++L P+ + +M L Sbjct: 304 KTLGKISKDLSVSESDAERLNVMVKDLDMTYLTMLWHFLIKGLEDLNLYPNLSIAFQMLL 363 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 R ++ + ++ Q + Sbjct: 364 TRLCHLKNMPDPQSVYESKEESKINTEHNKTSNQKINLQSTTQ 406 >UniRef50_Q6KIL7 DNA polymerase III subunit gamma and tau n=2 Tax=Bacteria RepID=Q6KIL7_MYCMO Length = 720 Score = 284 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 130/426 (30%), Positives = 219/426 (51%), Gaps = 8/426 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L RK+RP+ F ++ GQ+H++T L N L+ ++ HAYLFSG RG GKTS+A++ A Sbjct: 1 MDYKALYRKYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAA 60 Query: 61 GLNCETGITAT-PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNCE I C +C +D+IEIDAAS V++ R+L + V+Y+P++ + Sbjct: 61 ALNCEHEIQKEKICNLCVE----NLDNNLDIIEIDAASNNGVDEIRELREKVKYSPSQYK 116 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KVY+IDE HML++ +FNALLKTLEEPP+H F+LATTDPQK+P+T++SR +F+ K + Sbjct: 117 YKVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRIT 176 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + QL+ +L +E+I AL L+A+ AEG LRDALS+ DQ + ++ + V Sbjct: 177 LPILEKQLQEVLTKENIRINKNALTLIAKMAEGGLRDALSIADQISIFSNNNITEKEVDE 236 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + + + + + + + + V+ IN GI E L++ ++ ++ + + Sbjct: 237 VFSLVSIEDQIYFLNLIYKKDTTTVLRTINNYIESGINIEKLVINLIDIIRDFIVFNKTH 296 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 A+ + ++EL I L+ +L ++ E+ +L+ L Sbjct: 297 ASNLLEYLNE-EDLKEL--EIDIHFAYQTKDALMPLLSDLKHSEIPTRNFEIIILQLLHE 353 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 R + E + + + A P T + + Sbjct: 354 SKRDEILEQNKKNSLSEFFKNEDTQPIHLADSKVKQKNENAIKFTAPTETFETEFSSNDK 413 Query: 420 QRVQGA 425 + + Sbjct: 414 KNSNKS 419 >UniRef50_A9SKU4 Predicted protein n=4 Tax=Eukaryota RepID=A9SKU4_PHYPA Length = 1473 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 135/621 (21%), Positives = 261/621 (42%), Gaps = 20/621 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +++ +++K+RP++F D+VGQ V+ +L ++ G++ YLF+G RG GKT+ AR+ A Sbjct: 687 THRSMSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAAA 746 Query: 62 LNC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C T PCG+C C + R D+ EID ++ ++ R LL + GR Sbjct: 747 LVCLNTEPHRRPCGLCRECATMTLNRSRDVKEIDVSTCPDLDHMRLLL---NLPSSNGRQ 803 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V++++ L+ + A LK L++PP +V F+L TT+ ++LP++ SRC ++H L Sbjct: 804 QVFILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLKE 863 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I +L+ + +EH+ + AL L+A AEGSLRDA + DQ D ++ V + Sbjct: 864 SEIMTRLQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQLSLL-DQTITLAMVQEL 922 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + +++ ++L++ + A+ + + E G++ +L+ ++ L+ I Sbjct: 923 SGLIPEEKLINLLDMALAADTVNTVKGMRELLDAGVDALSLVAQLASLIANIL---AGAI 979 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 L + R + R ++ + L K+L + DR + LL+ Sbjct: 980 DLRRETRKKGFFYRNMPRREEQQRLRQALKVLAECEKQLRASNDRPTWLTAALLQFAPDR 1039 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 +P + + P +P P+ S+ ++R+ Q Sbjct: 1040 SYLPSSVD---------TSMAPSPIAFDTFERVPPGEPCTPRLPPPQPASESRSSRKHSQ 1090 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 +V + S+P R + + + S + A + + Sbjct: 1091 QVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQADD 1150 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 T+ V+ P + + + + + + QL L +A Sbjct: 1151 TSLRSASSLVLFDPSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQL-LSSQGTLMA 1209 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 L+ ++E+ + RS + A M G VEL + + P+V L Sbjct: 1210 LSVARDETFAVAHVEFRSPGHKARAERLRSSTCHAFQMALGCPVELKLSLECPPSVV--L 1267 Query: 601 EWRQAIYEEKLAQARESIIAD 621 E +A + ++ S + Sbjct: 1268 EEIKASHIAAQSEPSTSEVKH 1288 >UniRef50_Q2GI84 DNA polymerase III, subunits gamma and tau n=7 Tax=Rickettsiales RepID=Q2GI84_EHRCR Length = 505 Score = 283 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 203/385 (52%), Gaps = 2/385 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S A K+RP F D++GQE ++ L N L +I + L +G GVGKT+ AR+++ Sbjct: 12 STMSFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMC 71 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC +G T+ PC C NC I+ D+IEIDAAS T +ED + +L+N +Y P +FK Sbjct: 72 LNCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFK 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHMLS +FNALLK LEEP +VKF+LATT+ +K+PVTI+SRC +F + + + Sbjct: 132 VYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTD 191 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++ L+ + +E+++ + +++L+A A+GS+R+ALSL +QA + +S ML Sbjct: 192 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEML 251 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + L ++E ++ N + EA +L ML +++ I ++ Sbjct: 252 GYVSRHTLLEIIEPLIIGNATEALNKFEEACNS-YNSVIILDNMLQIIYEICYFSITKKD 310 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +I ++ + + PT + +Q L G +E+ + + M ++R Sbjct: 311 NSTSDNSIITYIKNE-KILSPTFLSRLWQMLFKGIQEVKSSSCIKQAANMLIIRLCYLSS 369 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTP 386 + Q Sbjct: 370 LPSPKQIIDKIQGKINNTSDINRKA 394 >UniRef50_B1X2D0 DNA polymerase III gamma subunit n=2 Tax=Cyanothece RepID=B1X2D0_CYAA5 Length = 381 Score = 283 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 183/355 (51%), Gaps = 4/355 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++Q K+RPQ+ D+ GQ+ V L ++ + A L SG +G GKTS AR++A Sbjct: 18 AFQPWHLKYRPQSINDLTGQDSVQKVLTRLITEDSVPQALLLSGPKGTGKTSTARIIAMS 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNCE G+T TPCG C NC+ I+ G +D++E+DAAS V+D R L+ + YAP R + Sbjct: 78 LNCEKGVTTTPCGECKNCKAIQNGNSLDVVELDAASHNGVDDIRKLVADAGYAPFSARTR 137 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H LS + NA LKTLEEP H KFLLATT+P K+ T+ SRCL + + Sbjct: 138 VFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQS 197 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSA 239 ++ +LE I +E ++ + L+ +AR+++G +RD++ L + GD V V Sbjct: 198 EVAQRLEDIAKKEGVSIDDSCLEAIARSSKGGMRDSIQLLFEVFCHKEGDEPVKVDKVYE 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + L+ Q L+ A+ + + ++ N ++ + +L + V L Sbjct: 258 VTKELNPTQVEFLLSAVAQGDSYNLVRCCNAIEESALDINKVFDALLTAWTDVMAVVLGA 317 Query: 300 AALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 +I + L++ + T + + + L + + + + + T Sbjct: 318 NPKQIAKTSILGTENLETLSQKLDLTMLTVGLEKLDQAERRIATSSNSSRWLLAT 372 >UniRef50_C2CUB2 DNA polymerase III, subunits gamma and tau n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUB2_GARVA Length = 771 Score = 283 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 133/526 (25%), Positives = 230/526 (43%), Gaps = 13/526 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L R++RP TF V+GQ V L L G+I HAYLFSG RG GKTS AR+LA+ Sbjct: 1 MA-LALYRRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAYLFSGPRGCGKTSSARILAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRF--VDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 +NC+ G T+ PCG C +C+++ G +D++EIDAAS V+D R+L + +APAR Sbjct: 60 CINCKEGPTSKPCGKCQSCKDLATGGSGSIDVVEIDAASHNGVDDARELRERAGFAPARD 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+K++++DE HM++ FNALLK +EEPPEHV F+ ATT+P K+ TI SR + + + Sbjct: 120 RYKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLV 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAV 237 E + L+ I +E I + L+L RA GS+RD LS+ DQ + DG +S + Sbjct: 180 PPEVMGPYLQDICKKEGIQAQKGVLRLAMRAGGGSMRDTLSVLDQLMIGSDDGVISLDSA 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-- 295 A+LG + +++A++E +G ++ ++ + G + + ++LG L + ++ Sbjct: 240 VALLGFTPSNLIADVIDALIEKDGAKLYEVVQKVVVGGFDTRKFVEDLLGRLRDLLLLVS 299 Query: 296 ---QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + LG+ ++ + + + + + + A RM +E+ Sbjct: 300 AGPNCAKNLLGDLSPEDMQDLQRQSSQLTLRSLSKMAEIVNNAFAGMANAVSPRMNLEIL 359 Query: 353 LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP----PQPQSAPQQAPTVPLPET 408 + R LA + + + +A ++ + P Sbjct: 360 MARLLADMQSGTTAQEPFSKATNQSLAKSSSHPASSARHFIGSNSAVNSVNPVNPVNPVK 419 Query: 409 TSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEK 468 ++ + + A + E ++ + Sbjct: 420 IAEAPSVILDDKSEINNNTQANWSTATVEKQTTQELDVDETWDNLVKNLPDDVREYVERD 479 Query: 469 APAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 K A+ + + P K+ Sbjct: 480 RVPKVRLDDGNASKRRLVLTFDQPISQHAFALAICTTEPYDGKKVP 525 >UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 Tax=Ammonifex degensii KC4 RepID=C9RAG1_AMMDK Length = 427 Score = 283 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 146/384 (38%), Positives = 208/384 (54%), Gaps = 18/384 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q L R WRPQ FA VVGQ HV L N L++GRI HAYLF+G RG GKTS AR+LAK LN Sbjct: 5 QALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRIAHAYLFAGPRGTGKTSTARILAKALN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C G T PC C C I +G +D++EIDAASR +++ R+L + V+ +P R+KVY Sbjct: 65 CLQGPTPVPCDTCPQCLSIMEGTSLDVLEIDAASRRGIDEMRELRERVRLSPVHSRYKVY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+ + NALLKTLEEPP V F+LATT+P K+PVTILSRC +F + L I Sbjct: 125 IIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRCQRFDFRRLPTALI 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + + E AL+LLA+AAEGS+RDALSL DQA+A +G++ V+ +LG Sbjct: 185 EEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAEGELRAIDVADLLGK 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + ++ + + + + L+NE RG + + +++ L Sbjct: 245 VPSQALEEMLTYLQKGDLAGALRLVNEIEERGKDLNLFVRDLILRLR------------- 291 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 I +RE P+ + L ++ +P + + +E+ L+R L+ Sbjct: 292 ---EEILRHLRE--ERKAPSWLLRSLAALHQALVDMRLSPLKSLTLELALIRLLSTEEGR 346 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPT 387 P V + +P Sbjct: 347 PPSLERVKALWPDVLQFVKEASPR 370 >UniRef50_D2MMY2 DNA polymerase III, subunit gamma and tau n=1 Tax=Bulleidia extructa W1219 RepID=D2MMY2_9FIRM Length = 547 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 125/396 (31%), Positives = 203/396 (51%), Gaps = 2/396 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q L +K+R + F +V+GQ++++ A+ N ++ ++ HAYLF G RG GKT++ARLLAK Sbjct: 1 MEKQALYQKYRSKKFTEVIGQDYIVQAIQNTVNQNKVGHAYLFCGPRGTGKTTMARLLAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NCE PC C +C +G D+IEI+AA+ T V+ RDL+D AP +G + Sbjct: 61 AINCEDSKE-KPCNHCVSCELANKGIHPDIIEINAANETSVDHIRDLIDKAYLAPMQGIY 119 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY++DEVH LS + +ALLK LEEPPE+V F+LATTDPQK+ TI+SRC +F + Sbjct: 120 KVYIMDEVHQLSSAASSALLKILEEPPENVIFILATTDPQKMLPTIISRCQRFDFHRVPS 179 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +QI+ L H+ N E I E A + LAR A+G +RDALSL DQ A G + + + Sbjct: 180 KQIQDHLLHVSNLEGIQLEEEAAKNLARLADGGMRDALSLLDQCSAYTSGDIKESDIRRI 239 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++ ++L+ + N ++ + +GI E L E + ++ I + + + Sbjct: 240 YGLTSVEEKMTLLNLIQTKNYFSIINHSKQYQEQGINLEKFLEEWIEVVKEIVLYVNTKS 299 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 ++ + +++ + L+ R++ ++ E+ ++ Sbjct: 300 REILEIL-TDEEASQISLLFSKQNWMKILDLLIEFREKFKQNKNQTAYFEVLCIQLSQIS 358 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P + E+ V Sbjct: 359 PAKEEEKTELVESQEPDPVLLVEEKDQPVLTATTKE 394 >UniRef50_Q0EXX3 DNA polymerase III subunits gamma and tau n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX3_9PROT Length = 561 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 167/554 (30%), Positives = 259/554 (46%), Gaps = 4/554 (0%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY VLAR+WRPQ F+D+VGQ+ V+ L N L+ G + HAYL G RGVGKT+IARL+A Sbjct: 1 MSYLVLARRWRPQQFSDLVGQDVVVRTLKNALASGNLAHAYLLCGIRGVGKTTIARLMAM 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NCE PCG C CR I G +D+ E+DAAS T V+D R++LD V+Y P+ + Sbjct: 61 AANCEQPEDGEPCGRCKACRGIADGSNLDVQEMDAASHTGVDDVREILDGVRYPPSSLKT 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +VY+IDE HMLS+ +FNALLKTLEEPP HV F+LATT+ +KLPVT+ SRC +F L+ L + Sbjct: 121 RVYIIDEAHMLSKSAFNALLKTLEEPPAHVLFILATTESEKLPVTVRSRCQRFDLRRLGL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +I L H+ +E I+ + A +ARAA+GS+RDALSL+++ +A +++ V A Sbjct: 181 SEIAAYLTHVFEQESISADSDAAAAIARAADGSVRDALSLSERVLAYSGKKLALADVDAA 240 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI-AMVQLSP 299 LG + + SL A+ + V+ + AA G LL E+ L H++ ++ Sbjct: 241 LGQIGVARIRSLSHAIFAGDALAVVEQMRAAAGTGHGARTLLQELARLWHQLSCLLVDES 300 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + + + L YQ L+ G ++L D RMG EM L+R Sbjct: 301 LLGEEVDLEQRQWLEQYRDKLSGPALDLRYQVLISGMRDLSL-VDERMGAEMILMRLCGL 359 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 + + A + Q + P P + + Sbjct: 360 NAISAVGALPAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKDAAG 419 Query: 420 QRVQGATKAKKSEPAAATRAR--PVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 + + + V + LA++ + VQ + + A K + Sbjct: 420 ANSAAEMSNQPAGQRCKDWPQVVAVLHEFKPGLAAMLEHVQCLEFSAKVRLALDKHQQAM 479 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A+ + + + ++ + A A + + L L++ Sbjct: 480 INASDRRAFAEWLGREVFWESRQAGEGESISQERERLARAEKARMRQHAEADPHLQALMQ 539 Query: 538 QVALNAWKEESDNA 551 ++ Sbjct: 540 EMDAQLVNVLPAGV 553 Score = 62.7 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 54/193 (27%), Gaps = 7/193 (3%) Query: 446 ALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505 A+ + ++ P ++ + + L Sbjct: 361 AISAVGALPAGNAPLPAAASATGNETIAAKAAVSDSGQAEASAPAPSAEADLPLKDAAGA 420 Query: 506 TPELAAKLAAEAIERDPWAAQVSQL-SLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLN 564 W V+ L + + + E V L L Q+ + Sbjct: 421 NSAAEMSNQPAGQRCKDWPQVVAVLHEFKPGLAAMLEHVQCLEFSAKVRLALDKHQQAMI 480 Query: 565 NRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI 624 N ++ A + G V + + + R+ + + A+ R+ AD ++ Sbjct: 481 NASDRR----AFAEWLGREVFWESRQ--AGEGESISQERERLARAEKARMRQHAEADPHL 534 Query: 625 QTLRRFFDAELDE 637 Q L + DA+L Sbjct: 535 QALMQEMDAQLVN 547 >UniRef50_UPI0001C3190A DNA polymerase III, subunits gamma and tau n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3190A Length = 724 Score = 281 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 199/388 (51%), Gaps = 11/388 (2%) Query: 1 MSYQV-LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS L R+ RP+TF+DVVGQ HV+ L N + ++HHAYLF G+RG GKTS+A++LA Sbjct: 1 MSAGPSLYRRHRPRTFSDVVGQTHVVRTLRNAVERDKVHHAYLFVGSRGTGKTSMAKILA 60 Query: 60 KGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNCE G T PCGVC +C I +D+IE+DAAS V+D R+L D V YAP G Sbjct: 61 ACLNCERGGPTIEPCGVCSSCVSIANATSLDVIEMDAASNNSVDDIRELRDKVAYAPVSG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY++DE HMLS ++NA LKTLEEPP H F+LATT+ K+ T++ RC +F Sbjct: 121 RYKVYILDEAHMLSSAAWNAFLKTLEEPPPHTIFVLATTEANKVLPTVVDRCHRFDFTRP 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-------DGQ 231 +VE+I L + ++E IA +A+ L+AR A GS RDAL +Q G + Sbjct: 181 NVEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAE 240 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 +S + V A+LG D + ++A+ + + + G + L+ E+ Sbjct: 241 ISVEDVLAVLGVADAEALFGALDAVSAHDARAALLAVARLVDAGRDAGGLVRELEAHARE 300 Query: 292 IAMVQLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + VQ+ A + R+ A + D+ L L R+ + Sbjct: 301 LLAVQVLGEVPAELRLTPERDARLAAQAAQLGRQDVVRLLDLLSDALDALANGAQARIQL 360 Query: 350 EMTLLRALAFHPRMPLPEPEVPRQSFAP 377 E+ L++A A Sbjct: 361 ELALVKAAAPEVDPSTRALLARIDRLEQ 388 >UniRef50_Q6F0D9 DNA polymerase III gamma and tau subunits n=1 Tax=Mesoplasma florum RepID=Q6F0D9_MESFL Length = 631 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 109/393 (27%), Positives = 198/393 (50%), Gaps = 3/393 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP F D+ G ++V+ L N L +I H++LF+G RG GKTSIAR+LAK +N Sbjct: 5 KALYRKYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVN 64 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C VC++C + R D+IE+DAAS V++ R++ +N+ P G++K+Y Sbjct: 65 CLNIKDGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNNINSLPFIGKYKIY 124 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML++ +FNALLKTLEEPP H F+LATT+ K+P TILSRC F+ K +D + Sbjct: 125 IIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISL 184 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 ++L I E + L+ +A +EGSLRDA ++ +Q + ++ + + ++ Sbjct: 185 MNRLSFICENEGYKIDKAVLEEIAIISEGSLRDASNVIEQLMTVTSDHITVEDLKSVFYV 244 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + ++ ++ + ++ +A +G++++ + ++ ++ I + + Sbjct: 245 ATKNEKMKILTNILNNDPATIINYFEKANNQGMDFDVFTLSLIEIVKEIIEFKFTNDENV 304 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP-YAPDRRMGVEMTLLRALAFHPR 362 ++ + + E A+ + + L + + + L Sbjct: 305 LNILD-KSDLNEFAQ-VNVKSLFEVADNLSEAYAKTKGTNINFNYLLISLLKTLKEPTEH 362 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 E V + + P + + Sbjct: 363 KIKIEESVLTIQENIIVKEVIAEPVHIQEPEKQ 395 >UniRef50_C0VYP8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYP8_9ACTO Length = 768 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 148/608 (24%), Positives = 245/608 (40%), Gaps = 24/608 (3%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L R+ HAYLFSG RG GKT+ AR+LA+ LNC G T TPCG C +C E+ G Sbjct: 3 EPLKAALKANRVTHAYLFSGPRGCGKTTSARILARCLNCVEGPTDTPCGKCASCIELATG 62 Query: 86 R--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 +D++EIDAAS V+D R+L + +APAR R+KV+++DE HM++ FNALLK + Sbjct: 63 GPGSLDVVEIDAASHNGVDDARELRERAAFAPARDRYKVFILDEAHMVTPQGFNALLKLV 122 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPPEHVKF+ ATT+P+++ TI SR + + + + + L + E I+ L Sbjct: 123 EEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPGDVLMPYLSSLCAAERISVAEGVL 182 Query: 204 QLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ RA GS+RD+LS+ DQ +A + +G +S + A+LG D +V + +G Sbjct: 183 PLVVRAGGGSVRDSLSVLDQLMAGAENGVISYERAIALLGYTDGTLLDGIVTNLHAGDGS 242 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA----ALGNDMAAIELRMRELAR 318 V + G + + + L L + ++ L+P L RM + A+ Sbjct: 243 AVFDALERMVDSGHDPRRFIEDFLQRLRDLLVISLAPEGARTLLQGIPVEQSERMYQQAQ 302 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPV 378 T + + + A ++ VE+ + R + + Sbjct: 303 QWGATKLSKAADLTDEALRSMVGATSPKLQVELLIGRI-----------LVEIQGAAKAS 351 Query: 379 APTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATR 438 A+ S+ + ++L+ +Q A + + Sbjct: 352 VERAITDQGGDSAGNASSDAPVVYPSGLSGAALAREEARRLREMQEAKAREAQSVPVSPV 411 Query: 439 ARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALK 498 L+ +A P+ E+A +A PV VV+T + + Sbjct: 412 HSAPAAQPLQPIAPTVSAPPVSVEPTPTEEATVPITPTAEQA--PVTTAIPVVSTVEPVY 469 Query: 499 KALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLR- 557 + +A AE + W + + A K +N V + + Sbjct: 470 EVPPITPLATVAEPAVAEVKLIEKWDVFTQIFLSEHAGWKNVVAALKVHQENEVEVIFQL 529 Query: 558 ---SSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQA 614 L+ +A + G + V A P E+ + + Sbjct: 530 PTVEQAEKLSGEKGTTIVAGVVEKTLGVVKRVKFVGPLEVAEAWPEVMVPGKPLEQDSPS 589 Query: 615 RESIIADN 622 A+ Sbjct: 590 EPVAAAEP 597 >UniRef50_C5VA21 DNA polymerase III subunit gamma/tau n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5VA21_9CORY Length = 977 Score = 281 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 149/604 (24%), Positives = 248/604 (41%), Gaps = 23/604 (3%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 L RK+RP +F ++VGQE V L+ L GRI+HAYLFSG RG GKTS AR++A+ LNC Sbjct: 2 ALYRKYRPGSFNELVGQEQVTVPLSAALDNGRINHAYLFSGPRGCGKTSSARIMARSLNC 61 Query: 65 ETGITATPCGVCDNCREIEQGR--FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G T+ PCG C++C + +D+ E+DAAS V+D R+L D +APA R+++ Sbjct: 62 VNGPTSKPCGKCNSCVSLAANGPGNLDVTELDAASHNGVDDMRELRDRAMFAPAESRYRI 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE HM++ NALLK +EEPP H+ F+ ATT+P+K+ TI SR + + L + Sbjct: 122 FIIDEAHMITNQGSNALLKIVEEPPAHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQA 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 241 +R LE + E E L+ RA GS RD LS+ DQ +A +G ++ Q +L Sbjct: 182 MRGLLERTVAAEGAIIEESVYPLVIRAGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLL 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G DD + + A+ + + +++ G+ ++L L + ++Q P A Sbjct: 242 GVTDDTLIDATIAALATNDRASLFTTVDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDA 301 Query: 302 ----LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 L + + + A+ I L G L A R+ +E+ + Sbjct: 302 VNLGLVDAPTDRGEILLQQAQEFDSQRIPRIAGILNDGLSSLKGATSPRLLLEILCAKM- 360 Query: 358 AFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQ 417 P AP + + P P S P P + AR Sbjct: 361 ----------LIEPGGQAAPAPALSAPSARPTPAAPASTPSSKYERPSQRRAREAQEARN 410 Query: 418 QLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYR 477 ++ + +++P + + + + ++ + +A +K + Sbjct: 411 VAEKPEVVEAPVEAKPRESEESPETRSTPPQPASTSVHAQPIDAIKNAWDKIRSTVSKTN 470 Query: 478 WKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVE 537 A + + + + L T LA++L A +A + L V Sbjct: 471 AVAGILLTGAQPLGIADETLVLGHN---TGALASRLNAPEHNATIQSAVLETTGLELEVR 527 Query: 538 QVA--LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA 595 ++ Q A + + + + Sbjct: 528 CEVGTNPKAFGFETDSPKPVWNPEQDAGEAGSDGDAQETAAQEAESTNPVAAEQVEPAES 587 Query: 596 VRTP 599 TP Sbjct: 588 GHTP 591 >UniRef50_B4VVC8 DNA polymerase III, subunits gamma and tau n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VVC8_9CYAN Length = 379 Score = 281 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 117/371 (31%), Positives = 194/371 (52%), Gaps = 13/371 (3%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SYQ K+RPQ +++VGQ ++ L N L G + + +LF G RG GKTS AR+ AK Sbjct: 6 SYQPWHLKYRPQNLSELVGQPLIVRTLTNELKTGNLPNVFLFDGPRGTGKTSTARIFAKS 65 Query: 62 LNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC + T TPCG C +CR I G +D+ E+DAAS V+D R+L++ + + R Sbjct: 66 LNCLSSSQPTLTPCGTCLSCRSICSGSNLDVRELDAASNNGVDDIRELINYSKLSTT-NR 124 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++ +DE MLSR + NA LK E+ + F+LATT+ +KL TI+SRC F + L Sbjct: 125 YRIIYLDECQMLSRSAQNAALKLFEDRLPNTIFILATTESEKLLDTIISRCQHFQFRRLS 184 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I +L I E I+ P AL+L+A+ ++G +RD++ L +Q S +G++ V Sbjct: 185 TQDITERLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMSTNGKIEPHHVRD 244 Query: 240 MLGTLDDDQALSLVEAMVE---ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++G++ D + L ++ + +MAL N+ G+E L+ E+L + + + Q Sbjct: 245 VIGSIPADSLVDLCVSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLVFQ 304 Query: 297 LSPAALGNDMAAI-------ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 LS + + L++ + +I TL + + + +G+ Sbjct: 305 LSQDTNSLKQGKVPFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQSSNPLIGL 364 Query: 350 EMTLLRALAFH 360 E+ LL+ Sbjct: 365 EICLLQLAYPC 375 >UniRef50_B0T1T4 DNA polymerase III, subunits gamma and tau n=10 Tax=Alphaproteobacteria RepID=B0T1T4_CAUSK Length = 632 Score = 281 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 150/378 (39%), Positives = 213/378 (56%), Gaps = 6/378 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y VLARK+RP+TF D++GQE ++ LAN S GRI HA++ +G RGVGKT+ ARLLA+ Sbjct: 82 AYTVLARKYRPRTFEDLIGQEAMVRTLANAFSSGRIAHAFMLTGVRGVGKTTTARLLARA 141 Query: 62 LNCETGITATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LN ET P +C+ I +GR +D++E+DAASRTKV++ R+LLD V+YAP Sbjct: 142 LNYETDTVHQPSVDLTIDGRHCKAIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVE 201 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R+KVY+IDEVHMLS +FNALLKTLEEPP H KF+ ATT+ +K+PVTILSR +F L+ Sbjct: 202 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQRFDLRR 261 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQ 235 ++ + + I +E E L L+ARAAEGS+RD LSL DQAI G+ V+ Sbjct: 262 VEPDVLVKHFARIAAKEGAKVEEDGLALIARAAEGSVRDGLSLLDQAIVQGERGSTVTAA 321 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V MLG D Q ++L E ++ +A G + +++++L H ++ Sbjct: 322 VVRDMLGLADRGQTIALFENVMSGKPGDSLAGFRALWGFGADPAVVMLDLLDHCHGASVA 381 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + R+ + + +Q LL +E+ APD EM L+R Sbjct: 382 KALGPDALTLPKEQAARLTAIGAQTSAGTLSRLWQMLLKAHEEVRRAPDAMAAAEMALIR 441 Query: 356 ALAFHPRMPLPEPEVPRQ 373 E + Sbjct: 442 LCYAADLPGPEEALKALR 459 >UniRef50_Q98RG0 DNA POLYMERASE III SUBUNIT GAMMA AND TAU n=1 Tax=Mycoplasma pulmonis RepID=Q98RG0_MYCPU Length = 836 Score = 280 bits (716), Expect = 9e-74, Method: Composition-based stats. Identities = 124/490 (25%), Positives = 217/490 (44%), Gaps = 17/490 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L R +RP TF +V GQ+H++ L N + +I H YLF+G RG GKTS+A++ A Sbjct: 22 MNYKALYRVYRPTTFDEVNGQDHIVATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFAT 81 Query: 61 GLNCETGITA-TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 LNC PC +C + +D+IE+DAAS V+D R L + ++ P +G Sbjct: 82 ALNCIHKNDDFNPCQICIE----NSNKNIDIIEMDAASNNSVDDVRRLNEELKSLPLKGE 137 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +++Y+IDEVHM ++ +FNALLK+LEEPP+HV F+ ATT+ K+P TILSR +F+ + + Sbjct: 138 YRIYIIDEVHMFTKSAFNALLKSLEEPPKHVIFIFATTESHKIPNTILSRVQRFNFRRIS 197 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I L +IL +E I +EP++L +A A GS RDALS+ DQA G G+++ + + Sbjct: 198 NDVIIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSIADQASIYGQGKITLKNLIT 257 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 G ++ ++L+ N + ++E G + E LL+ ++ ++ + + + Sbjct: 258 SFGISSNESVINLINN-TVFNLYEAINNLDEFKKNGADPEYLLISLINIIKDFIVFKKTN 316 Query: 300 AA--LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR----RMGVEMTL 353 L + I + + + L + + + Sbjct: 317 NLSFLALLSFDEIDLI-----KIDLQKSYFIIEEAMKTLEFLRISEMPFDAIEILIIKVH 371 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVL 413 + + E Q+ S + ET+ Sbjct: 372 KKIGQEEEKENENEKLKIIQNSIDNEKIKDELLNYASASKGSIGTNTIETSILETSEDEE 431 Query: 414 AARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKK 473 A G K E + + N+ ++ + + E + ++ Sbjct: 432 AQSLTQILNSGEMDLKLKEKTNNSWDKTQNHKQQSNTDLISKTNEIITNLNENEASISEL 491 Query: 474 EAYRWKATTP 483 + + Sbjct: 492 DQNIITSEID 501 >UniRef50_B1MVT7 DNA polymerase III, gamma/tau subunit n=1 Tax=Leuconostoc citreum KM20 RepID=B1MVT7_LEUCK Length = 604 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 268/636 (42%), Gaps = 36/636 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+YQ L R +RP+TF D++GQE + L N + + HAYLFSG RG GKTS A++ A+ Sbjct: 1 MAYQALYRVYRPRTFEDMIGQEVITQTLKNAIETHQTGHAYLFSGPRGTGKTSAAKIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N T + D++E DAAS ++VED RD+L NV YAP F Sbjct: 61 EVNGIAPETDDS-------------QISDIVEFDAASNSRVEDMRDILSNVDYAPIEAEF 107 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS +FNALLKTLEEPP +VKF+LATT+PQK+PVTILSR +F K +D Sbjct: 108 KVYIIDEVHMLSNSAFNALLKTLEEPPANVKFILATTEPQKVPVTILSRTQRFEFKRIDG 167 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + I L +L ++HI + AL+++A AEG +RDALS+ DQ IA G V+ + Sbjct: 168 QAIAAHLADVLKQQHIDFDQDALRIIANVAEGGMRDALSILDQVIAFGTDTVTVDNALQV 227 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G+ Q + + A+ + + L+++ G + + + +++GLL I + ++P Sbjct: 228 TGSTTTTQLMQYLTAVTNSQTPEALKLLHDILVAGKDAQRFVSDIIGLLRDIMLANIAPE 287 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +R LA+ + IQ L +K+L + +E+ ++ Sbjct: 288 LIKSTAP--LNDLRTLAQQLNSQQIQAMMGELDDIQKQLLQTMQSDVYLELLTVKLGMMI 345 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + + Q Q Sbjct: 346 QGDQSHTESTQHATRNTSSFASPESLNDPTVTTQPVSSDTQPDTTTVIAEPTQNEGVSAQ 405 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 AT A +++ + + T ++ + A ++ + W Sbjct: 406 ENLEATHDTVKPIAQSSQYDESEAVSHNNSLARTGQLAVFAILQAAKRDTLSRSKSTWAT 465 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 A A E + + A + Q ++++ Sbjct: 466 LISTFNVAHQALLTIASPVAASQEGL-----------VVAFDYPALLDQALKDVVLQEKL 514 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 + A +E++ + + ++L + TI D P V Sbjct: 515 IAALREQNLPTALVLISKDDWQQERAEYVKQLKAGTTQ--------TISLSDVPYVS--Q 564 Query: 601 EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELD 636 + + A +++IA + ++ F ++ Sbjct: 565 QEVLTTATDATITATDAVIAPKVVTEAQKLFGNDIV 600 >UniRef50_B9KFI3 DNA polymerase III, gamma and tau subunits n=3 Tax=Campylobacter RepID=B9KFI3_CAMLR Length = 510 Score = 279 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 205/387 (52%), Gaps = 22/387 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA K+RP+TF ++VGQ V +L L R+ HAYLFSG RG GKTS AR+ ++ L Sbjct: 3 QALAIKYRPKTFDELVGQSTVSISLKYALENNRLAHAYLFSGLRGSGKTSSARIFSRALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PCG C C G +D+IE+DAAS +ED ++L++ V+YAP+ RFK++ Sbjct: 63 CENGPNANPCGKCSQCVSSLNGSNIDIIEMDAASHRSLEDIQELIEQVKYAPSMARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHML+ + NALLKTLEEPP +VKF+LATTDP KLP T+LSR F K + ++I Sbjct: 123 IIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQISQQEI 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 LE IL +E I++E AL+L+AR+ GSLRD L+L DQAI + TQ ++AMLG Sbjct: 183 LKHLEWILEQEKISYEKEALKLIARSGNGSLRDTLTLLDQAIVYCQNHIQTQKITAMLGF 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + +A++ ++V + E E ++ EM+ L + + Sbjct: 243 LDPAKIEEFYQAILANEKDKVFEFLKEFEDY--EASNVIDEMIFFLKEAFFAKNN----- 295 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + +++ L + L + D + + + Sbjct: 296 ---------------LFSMLIYERFFRILSRAKTMLNSSDDDSFVLCVMAFMLIEATYLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVP 390 + E + + +P P+ Sbjct: 341 SIDEAIKGSKQDSTPSPKQQEIPSIQQ 367 >UniRef50_C1A7E4 DNA polymerase III gamma and tau subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7E4_GEMAT Length = 598 Score = 279 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 161/536 (30%), Positives = 236/536 (44%), Gaps = 12/536 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS LARK+RP+ FA V Q HV L ++ GR+ H YL G RG GKT++AR+LA Sbjct: 1 MS-LALARKYRPRNFATVAVQNHVANTLKGAIARGRVAHGYLLCGPRGTGKTTLARVLAM 59 Query: 61 GLNCETGI----TATPCGVCDNCREIEQGR-FVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LNCE PCG C +C+ I G +D++EIDAAS V+D R+L + YAP Sbjct: 60 ALNCERRGEPELQGEPCGHCGSCQRIWSGSASLDVVEIDAASNRGVDDARELRERAMYAP 119 Query: 116 AR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV---TILSRCL 171 + R+KVY++DE HML+R ++NALLK LEEPP V F+ ATT+PQK+ ILSR Sbjct: 120 SGDDRYKVYIVDEAHMLTREAWNALLKILEEPPPRVVFVFATTEPQKIAQQAAPILSRLQ 179 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-G 230 +F LK + +IR +L +L EE +A E AL ++ARAA+G LRDALSLTDQ ++ G+ Sbjct: 180 RFDLKRIGPAEIRERLAAVLTEEQVAFEADALGMIARAADGGLRDALSLTDQVLSLGESA 239 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 V+ V LG + DD+ L+L++ + E V A + A G+++ +L + LL Sbjct: 240 AVTADRVQTALGLIPDDEYLALLDMVAERRAVDVFATVQRLADAGVDFVLVLSGLGDLLR 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 + + + E + + D+ LL + ++ +E Sbjct: 300 -AQLAIALGGVPPELPERMRAALDERKQRLAANDLLRMLHALLELEPMYRRSGQPQLLLE 358 Query: 351 MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTS 410 L+R + L E S P + A AP + + Sbjct: 359 TLLVRFALLDRTIELQEVLQGFGSGGREDPPLRRAAHESRVASAHALPPAPPAVMAPAPA 418 Query: 411 QVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP 470 Q + + A A A + V +A Sbjct: 419 VSSTQAAAQVLAQAVPTPRPATQQVADAAAAAQRADRQAAPRVPTTPPTVEQVLNQWRAV 478 Query: 471 AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 A + + ++ V T + AAE D AA Sbjct: 479 ADAIRAKGRGMLAQAVERLVPITITPNGGLTLGYDPLDDTFAQAAENSRADVLAAV 534 >UniRef50_Q2QW40 Os12g0209300 protein n=4 Tax=Oryza sativa RepID=Q2QW40_ORYSJ Length = 1174 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 106/427 (24%), Positives = 200/427 (46%), Gaps = 4/427 (0%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F+++VGQ V +L+N ++ +I AYLF G RG GKTS AR+ + GL+ Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PCG+C C + G +LIE+DA++R + ++LL+N+ + R+K++ Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM+S ++A +K L+EP V F+ T DP LP ++SRC ++ + I Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ ++G Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLVGV 638 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + +++ L L+E + ++ + E GI+ AL+ ++ GL+ I A Sbjct: 639 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADST 698 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + A+ R +Q + L K++ + +R LL+ H Sbjct: 699 ANDMAVGGRSLTDGE---LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSSE 755 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + + + ++ + + + + Sbjct: 756 MNQARSSTTECHKSMNDAVTEAGRESSSSRAASHSISAFGVSKKLLDPKATSLHSSPQAL 815 Query: 424 GATKAKK 430 + ++ Sbjct: 816 ASHSSRS 822 >UniRef50_A8F087 DNA polymerase III subunits gamma and tau n=15 Tax=Rickettsia RepID=A8F087_RICCK Length = 544 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 128/428 (29%), Positives = 218/428 (50%), Gaps = 42/428 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y ARK+RP FA++ GQE ++ L+ + R+ YL +G RGVGKT+ AR++AK + Sbjct: 10 YIPFARKYRPGNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKTV 69 Query: 63 NCE----------------TGITATP-----------------------CGVCDNCREIE 83 NC A P C C NC Sbjct: 70 NCSALITEDTVGNSVKLKYNEQGAKPIGNRRVTSNNVGKFKSIDYTIRTCEECTNCISFN 129 Query: 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D+IEIDAAS+T V+D R ++++ +Y P +G+ K+++IDEVHMLS+ +FNALLKTL Sbjct: 130 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL 189 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP H+ F+ ATT+ QK+P TI+SRC ++ L+ L E+I LE+I +E++ + AL Sbjct: 190 EEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKADIEAL 249 Query: 204 QLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 ++++ +EGS RDA+S+ DQA + D +S+Q ++ MLG +D + E ++ Sbjct: 250 RIISFKSEGSARDAVSILDQAASMSAKSDNIISSQVINQMLGLVDTSVIIEFFEYIIRRE 309 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 E+ + LIN+ + + E + + + + V++ P + R++ + I Sbjct: 310 TEKAINLINKLYSFSVNLEIFIESVADFIAYLNKVKMLPNYRLPIYESFNDRIKNILSEI 369 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAP 380 + + +Q G E+ + ++ EM +++++ L + +V Q+ Sbjct: 370 SLPYLSILWQIYNKGVVEIKISYNQLTETEMLVIKSIYSRSLPLLTDFDVNNQNLNQSIN 429 Query: 381 TAVMTPTQ 388 + + Sbjct: 430 PEIKKKFE 437 >UniRef50_Q7P6U1 DNA polymerase III subunit gamma/tau n=15 Tax=Fusobacterium RepID=Q7P6U1_FUSNV Length = 490 Score = 277 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 110/296 (37%), Positives = 174/296 (58%), Gaps = 2/296 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RK+RP +F++V G+ ++ +L L + HAYLFSG RGVGKT+IARL+AKG+ Sbjct: 8 HITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIAKGV 67 Query: 63 NCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC PC C NC+ I +GRF DLIEIDAAS +++ R L + + Y P G K Sbjct: 68 NCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPVEGLKK 127 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDE HML++ +FNALLKTLEEPP HV F+LATT+ +K+ TI+SRC ++ K LD++ Sbjct: 128 VYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDFKPLDLK 187 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 +++ LEHIL EE+++ ++ + GS+RD++S+ ++ I + ++ + Sbjct: 188 EMKAGLEHILKEENLSMTDDVYSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAEDT 247 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 LG + + ++ N ++ + A + E ++ + + Sbjct: 248 LGITPSSRIKIFLNKILNENEYDIINELENLANESFDIELFFKDLAKYCKNAIVKK 303 >UniRef50_B1BRC3 DNA polymerase III subunit gamma/tau n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRC3_CLOPE Length = 531 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 127/481 (26%), Positives = 237/481 (49%), Gaps = 9/481 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K+RP TF V+GQ L ++ +I H+YL G RG GKT+ AR+LAK +NC Sbjct: 2 LYEKYRPNTFESVIGQGENAEILKKQVASKKIAHSYLLYGERGSGKTTTARILAKAINCL 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + I PCG C NC IE+ + +D++EIDAAS V++ R+++D+++YAP ++KVY+I Sbjct: 62 SPINGEPCGKCANCIAIEEKKAIDVVEIDAASNNGVDNIRNIIDDMKYAPTSMKYKVYII 121 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HMLS+ + NA LKTLEEPPE+ F+L TT+ LP+TILSRC ++ K +DV+ I + Sbjct: 122 DEAHMLSKAASNAFLKTLEEPPEYGVFILCTTEQTALPITILSRCQRYTFKHIDVKDIFN 181 Query: 186 QLEHILNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVS-TQAVSAMLG 242 ++ I +E + L L+++ A+G++RDA+ + +Q I +G ++ V +LG Sbjct: 182 RINFIATQEGYNPSDKEKILYLISKMADGAVRDAICILEQVI---NGNITDYNEVVKLLG 238 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L+ + ++N +R + LI +A + + E L+ ++ L+ I +++ + + Sbjct: 239 VVSNRTLFELLATLKKSNSKRAIDLIYKALEQ-TDAEKLITNIIALVRAILLIKSNASID 297 Query: 303 GNDMAAIELRMRE-LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 M+ ++ + + A+ +++ + ++ + + + +EMT+L+ + Sbjct: 298 LIKMSDEDINIAKSAAQCFETSELFNIIEAFNKVYFDVKNSNFKGVLIEMTVLKLIEDLS 357 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 P + + + Q + + E + A Sbjct: 358 ISVKPINNIDINGLRAEIESELKAKYSNQAQNTDKLKATLEKEIEEKYKRQFQAAIPQIE 417 Query: 422 VQGATK-AKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 K K+ E + L++ ++ + + + P+ + A Sbjct: 418 KNIREKIQKEVEETQNSNFERAEKVKLQKAIDLSKQKLIEECNNLAKNNPSFSSLAQAFA 477 Query: 481 T 481 Sbjct: 478 K 478 >UniRef50_B9KH82 DNA polymerase III gamma subunit (DnaZ) n=4 Tax=Anaplasma RepID=B9KH82_ANAMF Length = 514 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 218/461 (47%), Gaps = 11/461 (2%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA K+RP++F D+VGQ+ ++ L N ++G + L G GVGKT+ AR+++ LNC Sbjct: 43 LALKYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCV 102 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 G T PCG C C I+ D+IE+DAAS T V+D R LL+N Y P R+KVY+I Sbjct: 103 NGPTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIRVLLENSSYLPTSSRYKVYII 162 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DEVHMLS +FNALLKTLE+P EHV+F++ATT+ +K+PVT+ SRC + L L +Q+ Sbjct: 163 DEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFA 222 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I +E I H+ L+L+A A GS+R+AL L +Q+ ++ V A+LG +D Sbjct: 223 HLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSAIYTKNKIHVSEVRALLGCVD 282 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 +LV+ ++ A+ + + E ++ + +L + +++ + + +S Sbjct: 283 KHLTENLVKCILLADASSALEVFRELCSQSL-PVPILEGVQLIVYELCVTSVSKGHKF-- 339 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + + R+ + +QTL G +E+ A D + EM ++R Sbjct: 340 --DLGRELLSTVRSGSTPFLSRVWQTLTHGLQEVKNADDVQRAGEMMVIRLCYLSDLPSP 397 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 + + + + + PE S+ + Sbjct: 398 QKIAGLL------LSKSREGAPMHTVKKKVEGATTYSYGTPELESRTMGGTSGESAGPSQ 451 Query: 426 TKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 A +S P +++ T P Sbjct: 452 VAASESAPTQRVYDNEQRTEPMKKNGVNTHDKVYNPEEDEA 492 >UniRef50_C7ND36 DNA polymerase III, subunits gamma and tau n=3 Tax=Leptotrichia RepID=C7ND36_LEPBD Length = 524 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 200/352 (56%), Gaps = 14/352 (3%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ L RK+RPQ F ++ GQE VL A+ N L ++ HAYLF+G RGVGKT+IARL+AK Sbjct: 1 MN-ITLYRKYRPQNFDEIAGQEFVLRAIKNSLRENKLSHAYLFTGPRGVGKTTIARLIAK 59 Query: 61 GLNCETGIT--ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 G+NC PCG C+NCREI QG +D+IEIDAAS +++ R+L + + Y P +G Sbjct: 60 GVNCLNSENVTDNPCGECENCREISQGISMDMIEIDAASNRGIDEIRELKEKINYQPVKG 119 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R K+Y+IDEVHML++ +FNALLKTLEEPP HV F+LATT+ K+P T++SRC ++ + Sbjct: 120 RKKIYIIDEVHMLTKEAFNALLKTLEEPPSHVIFILATTEIDKIPDTVISRCQRYDFLPI 179 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAV 237 D + I+ L+++ +E I + +L L+ R +EGS RD+ S+ +Q ++ + ++ Sbjct: 180 DKKDIKKLLKNVAEKEKITIDEASLDLIYRKSEGSARDSFSIFEQVVSNFNNEEIDITKT 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH------- 290 LG + D + + + N E+++ I++ G+ E L + L Sbjct: 240 QNALGVVPDVILEEFLNLIKDGNKEKLVDFIDKIWEEGLIIETFLKDFSYYLKEQFKKKT 299 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 +++ L E + E R + I Y+T RK L Sbjct: 300 DLSVNFLLDTISAIFFTLNEFKYEEDKRLLGYVLIHELYKT---QRKNLRQN 348 >UniRef50_D1I8B7 Whole genome shotgun sequence of line PN40024, scaffold_35.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I8B7_VITVI Length = 1078 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 112/421 (26%), Positives = 187/421 (44%), Gaps = 6/421 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP F +++GQ V+ +L N +S GRI YLF G RG GKTS AR+ LN Sbjct: 319 RSLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALN 378 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN--VQYAPARGRFK 121 C PCG+C C + G+ EID ++ ++ R LL +K Sbjct: 379 CLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYK 438 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ A LK LEEPP V F+ T D + +P T+LSRC ++ + Sbjct: 439 VFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEG 498 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I ++E++ E AL+L+A A+GSLRDA ++ DQ G +++T V+ ++ Sbjct: 499 DIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLG-KRITTSLVNDLV 557 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+E + ++ + E G++ L+ ++ L+ I Sbjct: 558 GVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVD 617 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + R A ++ + L K+L + +R TLL+ + P Sbjct: 618 AQQSDSFFGGRSLTEAE---MDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSPSP 674 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 L + S + + Q S +A + Sbjct: 675 DPTLSGSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNSTH 734 Query: 422 V 422 Sbjct: 735 Q 735 >UniRef50_B9Y2E6 Putative uncharacterized protein n=3 Tax=Helicobacter pylori RepID=B9Y2E6_HELPY Length = 558 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 129/412 (31%), Positives = 205/412 (49%), Gaps = 23/412 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 CE G A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITEGKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ E E++L EM+ L + Sbjct: 242 IDRSVLEDFFQSLINQDEVRLKERYAIL--ENYETESVLEEMMLFLKAKLLSP------- 292 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + + ++ Sbjct: 293 --------------DSYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLK 338 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L + + + A + P Q + ++ + E+ Sbjct: 339 ALDDAILELEQSKENAFQPLNQNANAPKQEPKSAEKIEKLEKIESAETPQTP 390 >UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XKJ2_9HELI Length = 587 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 133/322 (41%), Positives = 188/322 (58%), Gaps = 5/322 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q LA K+RP F ++VGQE V L+ L R+ HAYLFSG RG GKTS AR+ A+ Sbjct: 1 MEQQALALKYRPMDFDELVGQEAVSRTLSLALDSKRLSHAYLFSGLRGSGKTSSARIFAR 60 Query: 61 GLNCETGITATPCGVCDNCREIEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 L CE+G + PCG C NC +D++E+D AS K++D RDL++ +Y P G Sbjct: 61 ALQCESGPRSKPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIRDLIEQTKYHPNIG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 RFK+++IDEVHML+R +FNALLKTLEEPPE+VKF+LATTDP KLP TILSR F K + Sbjct: 121 RFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKRI 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I L+ IL E I ++ AL +L R+ GSLRD L+L DQAI V+++ + Sbjct: 181 SDRSIFEHLKKILQNEQIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYSSYNVTSEVCA 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 MLG ++ + +L E + + + ++ ++ E LL EM L + + + Sbjct: 241 NMLGLINAESLNALFECIFTQDRDSLLKMLEGFFEY--ECGMLLDEMSIFLKEKLL-KGN 297 Query: 299 PAALGNDMAAIELRMRELARTI 320 + + R+ A+ + Sbjct: 298 DTRYSSLLIDRFFRIITQAKEL 319 >UniRef50_B3TCV4 Putative ATPase family associated with various cellular activities (AAA) n=2 Tax=root RepID=B3TCV4_9BACT Length = 555 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 120/392 (30%), Positives = 210/392 (53%), Gaps = 8/392 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y++LA K+RP+ F +++GQ+ ++ L N + RI A++ +G RG GKTS AR+++K Sbjct: 5 TYKILALKYRPKNFKELIGQDIMVETLVNSIKSNRIAQAFMLTGERGTGKTSTARIISKS 64 Query: 62 LNCETGI-TATPC--GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 L C C G +C EI + +D+ E DAASRT V+D R ++D +Y P Sbjct: 65 LTCTGNFLEGVKCKTGEICHCEEITNDKHLDVTECDAASRTGVDDVRQIIDAARYKPTTA 124 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++K+Y+IDE HMLSR ++NALLKTLEEPP +KF+ TT+P+K+P+TI SRC FHL Sbjct: 125 KYKIYIIDECHMLSRSAWNALLKTLEEPPNQLKFIFCTTEPKKIPLTIASRCQTFHLHRA 184 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---GDGQVSTQ 235 ++ + L+ I E A++L+A+A+ GS+RDA+SL D+A+ + + +V Sbjct: 185 SIKVLFDHLKKISKIEEGKISDSAIKLIAKASTGSVRDAISLLDRALINQHVSEKEVDEA 244 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + MLG D + L L++ + + + ++ + + + G++ +L ++L LL+ I Sbjct: 245 TMRKMLGVADRSKILELLKFIFDGDQKQSIESLKQMIDEGLDAASLKNDILELLYFILQK 304 Query: 296 QLSPA--ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + +++ + + L++Q L E + +G+EM + Sbjct: 305 KNLGDFESDLTISESELEMIDVISKDVRTETLILFWQFTLKALDEDKILTNPLLGLEMLV 364 Query: 354 LRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 +R L + S + Sbjct: 365 IRLLHLKGMPTYEDLINKSISSQTDEISTQEQ 396 >UniRef50_Q7NAN5 DnaX n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN5_MYCGA Length = 624 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 1/443 (0%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 +K+RP + ++GQ H+ L + ++ AY+F G+RG+GKTSI+++LAK NC Sbjct: 27 FYQKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYNCL 86 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 C C C I + + D+ E+DAA+ V++ R ++D + YAP KVY++ Sbjct: 87 NKKDGDVCNQCSACELINENKSQDIYELDAATNNGVDEIRKIIDAINYAPMNLSKKVYIL 146 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE HMLS ++NALLKTLEEPP+HV F+ ATT+ K+P+T++SRC F+ K LD + + Sbjct: 147 DEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKLDKDDLVD 206 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L++++ +E I E A+ +A A GS RD LS+ Q + +++ + ++ G ++ Sbjct: 207 VLKNVVKQEKIKIEDSAIDKIADFASGSARDGLSILQQLAYDKNKKITVEKINETFGLIN 266 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + L +E + + + E+ + L+NE A+G + + ++L +L + + Q ++ Sbjct: 267 LEIKLEFLELINQHDLEKFVKLLNEIEAKGTNFVLFIQDLLAILIDLLVYQKVKSSSLLK 326 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + E + I + LL R + + + P + Sbjct: 327 VLDEEQVKAINLKNIKLLSLSEKINGLLSTRVS-QTNIKESLLLAVFDYLEQNPQPVVGN 385 Query: 366 PEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGA 425 V + + + + + V + + Q+ A + + + Sbjct: 386 NVEVVIKPKTKTTEQIQEKEEAKPQVEIKQKNENEKVVKVEQPNEQLKAKKVRSLPSEET 445 Query: 426 TKAKKSEPAAATRARPVNNAALE 448 + KS A + Sbjct: 446 ESSTKSTTNDQLDLSLDPTKAKD 468 >UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Y2_THELT Length = 465 Score = 272 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 18/346 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L RK+RP+ F ++ Q L N L +I HAY+FSG RG GKTS+AR+LAK LN Sbjct: 2 EALYRKYRPKNFDQIIDQLQAKLVLQNALLKNKISHAYIFSGPRGTGKTSVARILAKALN 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C PC C++C I++G D+IE+DAAS +++ R + D V + P K+Y Sbjct: 62 CSNRKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDE HML+R +FNALLKTLEEPPE V F+LATT+ +++P TI+SRC + + I Sbjct: 122 IIDEFHMLTREAFNALLKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIEFRNFSEDAI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAMLG 242 + + + E I A +++AR A G +RDALS +Q DGQ ++ Q V LG Sbjct: 182 LENIRKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANYADGQVITPQVVEKALG 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL----------------VEML 286 + D+ ++A+ + V L++E G++ + LL +++ Sbjct: 242 LVPDEIVQRYIKAIRNGLVKEVGELVDEVHRSGLDVDQLLQSSIEIIEEEISRNPSRDLI 301 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQT 331 + + ++ N A +L LA P I+ Y+ Sbjct: 302 SIGENLVLILRELKYSENRKAICKLLSMNLASKFESPEKIEHDYEI 347 >UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter showae RM3277 RepID=C6RIQ9_9PROT Length = 831 Score = 271 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 259/625 (41%), Gaps = 34/625 (5%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDENRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSQPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ AV+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSAVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A I + + E ++ E+ Sbjct: 243 LDPQRIEEILALVMSGDKPAVSAAIAQL--ESYDAEMVIDEI------------------ 282 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 283 --TANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPEPE---VPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + E + A TA ++ + Q ++Q LA L Sbjct: 341 SIDEMIAVDAREKFTDSQARTADFGGSRAASNAVKSAVQNGAAQGRNLSAQTLAGSANLN 400 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 ++ A S + LE + A Sbjct: 401 AKTPQEPGDQTSAAKTPNPAYEAFLVKIYDRSFDLGECFKNCIEFLEFSDGCMSLASSAA 460 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 + +E + ++L E + + + + Sbjct: 461 GEDQKRLREGSKVILQILRSLFGESAKIKITPKQSPEVGAQEQKGSANLDDERGGAAKSE 520 Query: 541 LNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL 600 N + + +L+ Q+L+ L TP Sbjct: 521 SNEVAPNQAGS-KFDSDVAPENLSQNDQAQELSNLTGNLFSD--------GSEERTATPS 571 Query: 601 EWRQAIYEEKLAQARESIIADNNIQ 625 E E Q ++ Q Sbjct: 572 EQNLDAKFESSEQGEQTQNLTPQTQ 596 >UniRef50_P75177 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma pneumoniae RepID=DPO3X_MYCPN Length = 681 Score = 271 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 131/509 (25%), Positives = 223/509 (43%), Gaps = 9/509 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 +VL +K+RP F+D VGQ+ + + N ++ ++ H Y+F+G RG GKT+ A+++AK +N Sbjct: 3 KVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAIN 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C C C+ C+ I +D+ EIDAAS+ + D R+L +NV P + + KVY Sbjct: 63 CLNW-NGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVY 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HML+ S++ LLKTLEE P++V F+ ATT+ K+P+TILSRC F K + + I Sbjct: 122 ILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLI 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 242 + +L + +E I AL LA A+GSLRD LSL DQ + +S V Sbjct: 182 QQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFN 241 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD +Q +EA++ + ++ LI+ ++GI + L E+ L + + Sbjct: 242 LLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDLYGYVKTGQIA 301 Query: 303 GNDMAAI--ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM-GVEMTLLRALAF 359 + ++R + + + G + ++ + + A++ Sbjct: 302 VVKPSDQTMAAKLRFHPKQYAL--LVQAIE-ANTGYGPSQLSLSDQIKAIVIHYNNAVSK 358 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL 419 P +P P V QS A + P P P + P+ +S V Sbjct: 359 EPHIPAYTPVVQTQSPAKEHVPSKTVEEAKPQLPAKEPVLYKVIEEPKVSSFVKDPVASK 418 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAP-AKKEAYRW 478 Q T + T + + V + P + + + Sbjct: 419 LIEQPQTIVQPEAQQEITEVEQPTETSPAPATDLFGLAIKPEVVRKRGRRPLSVENTDFF 478 Query: 479 KATTPVMQQKEVVATPKALKKALEHEKTP 507 + + Q P L + ++ Sbjct: 479 QPAVKKLIQPVSKPAPIKLIEPSDNNPVS 507 >UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter rectus RM3267 RepID=B9D4Q0_WOLRE Length = 906 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 147/485 (30%), Positives = 231/485 (47%), Gaps = 23/485 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA ++RP+ F+++VGQE V T+L + L R+ HAYLFSG RG GKTS AR+ +K L Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDESRLTHAYLFSGLRGSGKTSSARIFSKALV 62 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ G T+ PC C NC +GR +D+IE+DAAS ++D + L++ +YAPA RFK++ Sbjct: 63 CDHGPTSRPCEQCANCIAANEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAIARFKIF 122 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHMLS +FNALLKTLEEPP +VKF+LATTDP KLP T+LSR F + + + Sbjct: 123 IIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHFRFRQISRPDV 182 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ ILN E++ HE AL++LAR+ GSLRD L+L DQAI G+++ V+ MLG Sbjct: 183 VAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAKGELTQSVVAQMLGL 242 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 LD + ++ ++ + V A + + + E ++ E+ Sbjct: 243 LDPQRIEEILALVMSGDKSAVSAAVAQL--ESYDAEMVIDEI------------------ 282 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 A ++ + + +++ L R L + D + + L + Sbjct: 283 --TANLKANFLAQSPKYSLLLYERFFRILSQARSMLSVSSDGGFVLGVMLFMMIEAINLK 340 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + E A + + S + Sbjct: 341 SIDEMIAVDAR-EKFADSQARAADFSASRAASNFTGGRSEAARFRAPAQTGQISASADGS 399 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 T ++ A+ A N + + L + P + + AK + ++A Sbjct: 400 NLTGVNAAKLASQNGAALEQNLSAQTLTGSANLSAQTPQEPGGQTSAAKTQNPAYEAFLA 459 Query: 484 VMQQK 488 + + Sbjct: 460 KIYDR 464 >UniRef50_C6V4Y0 DNA polymerase III, subunits gamma and tau n=2 Tax=Neorickettsia RepID=C6V4Y0_NEORI Length = 403 Score = 270 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 178/328 (54%), Gaps = 8/328 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y LA K+RP+ ++VGQ+ ++ L+ ++ + A L SG G GKT+ AR + Sbjct: 8 MGYIGLANKYRPRLLNEIVGQDFLVKCLSASIARDEVAGAVLLSGPYGTGKTTTARAVTL 67 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L C + PC CD+C + G D++EIDAAS T VED R L++ Y P ++ Sbjct: 68 SLLCSNRMDVLPCLKCDSCLSVLNGSHPDVLEIDAASNTGVEDVRMLIEGALYKPLLSKY 127 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K Y+IDEVHMLS+ +FNALLK LEEPP+HVKF LATT+ QK+P TI+SRC + L L Sbjct: 128 KSYIIDEVHMLSQSAFNALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 187 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSA 239 I +L + E I A++ +A A+GSLRDALSL +Q +G+++ + Sbjct: 188 FVITERLTQVAEREQIEIAQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVDVLRN 247 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +G D + L+++++ + + + +N+ ++G E + +E++ + + Sbjct: 248 KMGLADLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGHEMLTIFMELV-----ALINEKIQ 302 Query: 300 AALGNDMAAIELRMRELARTI--PPTDI 325 L + LA+ + +I Sbjct: 303 DKLTARDDSKSGFFCRLAQCMLSSIEEI 330 >UniRef50_UPI0001BC5C50 DNA polymerase III subunits gamma and tau n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5C50 Length = 468 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 115/291 (39%), Positives = 189/291 (64%), Gaps = 2/291 (0%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y L RK+RP +F +V G++ ++ AL N L ++ AYLF+G RGVGKT+IARL+AK + Sbjct: 2 YITLYRKYRPSSFQEVAGEQEIVRALKNALKNNQLSQAYLFTGPRGVGKTTIARLIAKSV 61 Query: 63 NC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 NC E CGVC+NC ++G F+DL+EIDAAS +++ R L + + Y P++G+ K Sbjct: 62 NCLEPKEDGEACGVCENCTSFQEGSFLDLVEIDAASNRGIDEIRLLKEKINYQPSQGKKK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP HV F+LATT+P K+ TI+SRC ++ K L ++ Sbjct: 122 VYIIDEVHMLTKEAFNALLKTLEEPPAHVIFILATTEPDKILPTIISRCQRYDFKTLSLQ 181 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAM 240 + +QL++IL+ E++ E +L+ A+ GS+RDA+S+ ++ I +S + ++S + + Sbjct: 182 DMGNQLQYILSRENLEMEEEVKELIYEASGGSMRDAISVLERLIVSSSERKISLEESEKI 241 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 LG + + +++ + ++ ++E + ++ EA L + + Sbjct: 242 LGMTPIQKMEQFLHCLLQEEKKTILRELDELWFQSVDMEAFLKDFAKFIKN 292 >UniRef50_Q9M9R7 F14L17.24 protein n=2 Tax=Arabidopsis thaliana RepID=Q9M9R7_ARATH Length = 1071 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 111/399 (27%), Positives = 186/399 (46%), Gaps = 8/399 (2%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S Q L++K++P F +++GQ V+ +L N + GR+ H YLF G RG GKTS AR+L+ Sbjct: 420 SIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAA 479 Query: 62 LNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARG- 118 LNC+ PCG C C + G+ DL+E+DA + E R LL + AP Sbjct: 480 LNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQ 539 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV++IDE H+L ++ +LLK LE P + F+ TTD +P TI SRC ++ + Sbjct: 540 RYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKV 599 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I +L I ++E++ E +AL L+A A+GSLRDA ++ +Q G +++ V+ Sbjct: 600 RDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMG-KRITVDLVN 658 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA--MVQ 296 ++G + DD+ L L+E + ++ + E G + ++ ++ L+ I + Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYK 718 Query: 297 LSPAALGNDMAAIE--LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ ++ + L K+L + DR TLL Sbjct: 719 ALDEKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL 778 Query: 355 RALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQP 393 + + RQS + + Sbjct: 779 QLGSMPSPGTTHTGSSRRQSSRATEESISREVIAYKQRS 817 >UniRef50_B9GVN0 Predicted protein n=3 Tax=rosids RepID=B9GVN0_POPTR Length = 1241 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 192/401 (47%), Gaps = 6/401 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + L++K++P F++++GQ V+ +L N +S GRI YLF G RG GKTS AR+ A Sbjct: 466 NIRSLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASA 525 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG--R 119 LNC + PCG C C + G+ DL E+D + ++ R LL + P G R Sbjct: 526 LNCMSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPLGSSR 585 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +KV+LIDE H+L + A LK LEEPP+ V F+ TTDP +P T+ SRC ++ + Sbjct: 586 YKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFSKIK 645 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 I +L I NEE++ E AL L+A A+GSLRDA ++ DQ G +++T V+ Sbjct: 646 DRDIVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLG-KKITTSLVNE 704 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 ++G + D++ L L+E + + + + GI+ L+ ++ L+ I + Sbjct: 705 LVGDVSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGTYNV 764 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + + I + A ++ + L K+L + DR TLL+ + Sbjct: 765 VYAKHGDSLIGTQNLTEAE---LERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGST 821 Query: 360 HPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 RQS + ++ Q Sbjct: 822 PSMDLTLSSSSRRQSSRTTEEDPSSVSKESNVYKPNSDAQY 862 >UniRef50_Q2STA6 DNA polymerase III gamma-tau subunits n=3 Tax=Mycoplasma mycoides group RepID=Q2STA6_MYCCT Length = 669 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 109/377 (28%), Positives = 195/377 (51%), Gaps = 3/377 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q L R +RP+ F V G + L + RI+HA LFSG RG GKTS+AR+ AK Sbjct: 4 NKQSLYRAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKT 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + C C+NC+ + + +D+IEIDAAS V++ R++ ++V P ++K Sbjct: 64 VNCLNLTGSKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIREIKNSVSTLPINSKYK 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 VY+IDEVHML++ +FNALLKTLEEPP + F+LATT+ K+P TILSRC F+ +D Sbjct: 124 VYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFTKIDKN 183 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++++L++I+N+E+ E L + +EGSLRDA+++ +Q + + D ++ + + ++ Sbjct: 184 SLKNRLQYIVNQENYQIEKEVLDEIFYLSEGSLRDAINILEQLMLATDDLITIKNLKSIF 243 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + L ++ + N +++ +A +G+ W+ + ++ +L I +L+ Sbjct: 244 LIATKQEQLQVIHQSLNNNTNFIISYFQKANDQGMNWDVFALGLIEILKEIIEYKLTNNI 303 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP-YAPDRRMGVEMTLLRALAFH 360 ++ + + I + L L + + L + + Sbjct: 304 EFLNILEEDE--AKQFINIDVNHLFLLSDNLAEAYFKTKAANISFNYLLLSLLKTINSNN 361 Query: 361 PRMPLPEPEVPRQSFAP 377 + + + Sbjct: 362 KQENIQTINQNINNVES 378 >UniRef50_Q9ZLC5 DNA POLYMERASE III SUBUNITS GAMMA AND TAU n=12 Tax=Helicobacter RepID=Q9ZLC5_HELPJ Length = 582 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 148/616 (24%), Positives = 249/616 (40%), Gaps = 42/616 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L Sbjct: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+TG A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++ Sbjct: 62 CKTGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + + Sbjct: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG Sbjct: 182 ISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 +D ++++ + R+ E E +L EM+ L + Sbjct: 242 IDRSVLEDFFQSLINQDEARLQERYAIL--ENYETEGVLEEMMLFLKAKLLSP------- 292 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + I+ +++ ++ L + + + ++ Sbjct: 293 --------------DSYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLK 338 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 L + V + Q P +AP+Q P + L R++++ Q Sbjct: 339 ALDDAIVELEQTPFN---------QSPSISYNAPKQEPKSTERIEGREKLEKRERIETPQ 389 Query: 424 GATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTP 483 + K + + + Sbjct: 390 TPMLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDK 449 Query: 484 VMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNA 543 + ++ + + ++A K E +V + P L ++ Sbjct: 450 ELLRERFKIVKSIVDGVFGKGENIKIALKHHLENKSAPEETKEVKEFKFPPLKPKLTTET 509 Query: 544 WKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWR 603 E + + + + N + E T L+ Sbjct: 510 TAEMQEKETKEAVGKALQTKEND----------TKEVQENETKETKEAQPKEAPTALQEF 559 Query: 604 QAIYEEKLAQARESII 619 A + + + + Sbjct: 560 MANHSNLIEEIKSEFE 575 >UniRef50_Q057E1 DNA polymerase III, g and t subunits n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057E1_BUCCC Length = 368 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 136/362 (37%), Positives = 228/362 (62%), Gaps = 4/362 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y++L+ KWRPQ F ++G ++ + + N L+ +IH ++L SG GVGKT+IAR+LAK Sbjct: 1 MKYKILSNKWRPQNFNQIIGHKYTVKMIKNSLNFKKIHQSWLLSGMHGVGKTTIARILAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LNC+ GIT+ PC C NC +E+G+F+D IE+DAAS+TKV+D + +LD +YAP GRF Sbjct: 61 CLNCKIGITSIPCRKCKNCLSLEKGKFLDFIELDAASKTKVDDIKIMLDTTKYAPMCGRF 120 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+YLIDEVHMLS+HSFNALLK LEEPP++++ +ATT+ K+P TI+SRCL L + + Sbjct: 121 KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL 180 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQAVS 238 I + L+ I +E+I + AL++++ ++GS+R+AL+ + +S ++ + + Sbjct: 181 HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM--VQ 296 +LG LD L L ++ + ++ ++N A GI++ ++ ++ H+I++ + Sbjct: 241 KLLGILDKKNVLKLAIEIINNDFNKIFNILNNAEKIGIQYSNIVSSLIIFFHKISLIKIN 300 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 N ++ + ++ L++ I D+Q Y + LL G+ L +P ++G E+ L + Sbjct: 301 QKKKKKYNKISKYKQKVYILSKKISFKDLQFYCKILLQGKHYLNNSPSPKIGFEIMLFQI 360 Query: 357 LA 358 Sbjct: 361 FQ 362 >UniRef50_C3XGK3 DNA polymerase III gamma and tau n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGK3_9HELI Length = 939 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 237/507 (46%), Gaps = 22/507 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA K+RP+TFA++VGQE V L L +I +AYLFSG RG GKTS AR+LA+ L Sbjct: 42 AIALALKYRPKTFAELVGQESVARTLCLALDSKKIANAYLFSGLRGSGKTSSARILARSL 101 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 CE GIT++PCG C NC +G +D+ E+D AS K++D RDL++ +Y P GRFK+ Sbjct: 102 QCERGITSSPCGTCANCIAALKGAHLDITELDGASNRKIDDMRDLIEQTKYKPTMGRFKI 161 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDEVHML++ +FN+LLKTLEEPP +VKF+LATTDP K+P TILSR F K + Sbjct: 162 FIIDEVHMLTKEAFNSLLKTLEEPPNYVKFILATTDPLKVPATILSRTQHFRFKKIPTTA 221 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +++ L HIL +E+++ + +L +L R GSLRD L+L DQAI ++TQ ++ MLG Sbjct: 222 LKNHLAHILQKENVSSDEASLDMLIRNGHGSLRDTLTLLDQAIVFCQNSLNTQKLADMLG 281 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 LD +L +A++ + + + G E E +L E+ + Sbjct: 282 ALDPSAFDTLFQALLRKDMQECIKFAKSL--EGYEIEMILDELSLYIKN----------- 328 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 +M E IPP Y + + L D + +T+L+ L Sbjct: 329 ---------KMLEEIPQIPPVLGMRYANIINDSKAMLQLDCDSDFCLLLTILKMLEAQKI 379 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + +S A A +T ++ ++ + + + Sbjct: 380 REIANALKQLESMQTPAQNAQITQLSNDYIATQNSMESKNAMQVDSINPMQSNTSVDSIN 439 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + + + +++T + + + A ++ + Sbjct: 440 PIKDSINPTNTKDSINKDSLPQTQTSVNSNLTIESSNKDSITHINTAQDSINPMQYNDSV 499 Query: 483 PVMQQKEVVATPKALKKALEHEKTPEL 509 P K ++ H + Sbjct: 500 KNSIDSINATIPTNSKDSISHVNSNSP 526 >UniRef50_C7M1M4 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M1M4_ACIFD Length = 635 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 141/609 (23%), Positives = 229/609 (37%), Gaps = 38/609 (6%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L R++RP+ F +V GQE V L ++ G + HAYLFSG RG GKTS AR+LA L Sbjct: 5 YQSLYRRFRPRRFGEVRGQERVTETLRRAVAEGHVSHAYLFSGPRGTGKTSTARILAMAL 64 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NCE + PC C +C + +G D+ E+DAAS + V+ R + V AP GR++V Sbjct: 65 NCEAPVDGEPCLACASCEAVVRGSSADVEELDAASNSGVDSIRWITQTVAAAPV-GRWRV 123 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DEVHMLS+ + NALLKTLEEPP HV F+LATT+P K+ T+ SR F + LD Sbjct: 124 YIVDEVHMLSQAASNALLKTLEEPPAHVVFILATTNPAKVLATVRSRTQHFAFRLLDDAS 183 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + + +L + AL + R GS RD LS+ +Q +A G + Sbjct: 184 VDALVAEVLEALGASLSDEALAYVRRRGGGSARDTLSVLEQVLALGG-----------VV 232 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 D A++L +A+ + + + + ++A GI+ L+ + Sbjct: 233 NDAADGAVALAQAIADGDLASAVRIASDAFEGGIDPTELV----------------ADTV 276 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 G+ AR + +TL L A D ++ V L ALA R Sbjct: 277 GDLGRRFVAEALAGARGAELARLSRPLETLGRLGAGLRDALDPQVVVLAGLAEALAPDAR 336 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + E V + P +P A +P + V Sbjct: 337 LSALEARVAALEADLAGAGHMPRPKPPTGEPLPARTTSPEPAGHSASPNVAEPETSQPET 396 Query: 423 QGATKAKKSEPAAAT-------RARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + + + P++ A Sbjct: 397 RERASRAPARGLQDARRGGDEHPGASTEQRPSSLDRVRAAFARNQQRADVDRGEPSEPVA 456 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQL--SLP 533 Q + + ++ A + EA + A + P Sbjct: 457 TTPAPHGDDDQPAAAPDAHGSPVPSGLADEATRAAGPASLEARRQRLQARWFDDVMAKAP 516 Query: 534 KLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALS-MLKGSTVELTIVEDD 592 +++ + +A D + + + + ++ + E+ + Sbjct: 517 RVLRPLLAHARLAIRDERIVVAVDNRTVAERLVPHLAEIVALVGPDEFAEPPEIVVDPGS 576 Query: 593 NPAVRTPLE 601 + Sbjct: 577 SQTSSRAPA 585 >UniRef50_P47658 DNA polymerase III subunit gamma/tau n=1 Tax=Mycoplasma genitalium RepID=DPO3X_MYCGE Length = 597 Score = 261 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 5/332 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +QV +K+RP F +GQE + L N ++ ++ + Y+FSG RG GKT+ A+++AK + Sbjct: 2 HQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC C CD C+ I +D++EIDAAS+ + D R+L++NV P + KV Sbjct: 62 NCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKV 121 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y++DE HML+ S+ LLKTLEE P +V F+ TT+ K+P+TILSRC F K + + Sbjct: 122 YILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDL 181 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 I +L I +E I E AL +A ++GSLRD LSL DQ D ++S V Sbjct: 182 ILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTF 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 +D + + ++A++ + + L+++ + G+ + L E+ L + Sbjct: 242 NIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNI 301 Query: 302 LGNDMAA--IELRMRELARTIPPTDIQLYYQT 331 D + + + + + Sbjct: 302 NVLDSTEKTMIETLNFEKQHY--AFLIKAIEE 331 >UniRef50_Q04E50 DNA polymerase III, gamma/tau subunit n=2 Tax=Oenococcus oeni RepID=Q04E50_OENOB Length = 594 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 139/513 (27%), Positives = 246/513 (47%), Gaps = 18/513 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Y+ L R++RP+TF+D+VGQ + L N L ++ HAYLF+G RG GKTS+A++ A+ + Sbjct: 2 YKALYRQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREI 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 T ++ F D+IEIDAAS V++ R+L D YAP +FK+ Sbjct: 62 EGIPEDT-------------DRESFSDIIEIDAASNNGVDEIRNLRDAANYAPIEYQFKI 108 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 Y+IDEVHMLS +FNALLKT+EEPP VKF+LATT+PQK+P TILSR +F +DV+Q Sbjct: 109 YIIDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQ 168 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 241 I +LE +L+++ IA++P AL+++A A++G LRDALS+ DQA+A G+V V + Sbjct: 169 IVKRLEFVLDDQKIAYDPAALKIVANASDGGLRDALSILDQAVAITKTGRVELDDVFKIT 228 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 GT DQ + ++ +E + I++ G + ++L LL + +++++P Sbjct: 229 GTSPIDQQIGFLQHALEKQTAKAFKDIHKLLLDGKDPIRFAEDLLVLLKNLMLIKIAPE- 287 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ L++ + + + ++ + +E+ ++ +A Sbjct: 288 --LVSENAFNQIENLSKEFSNSVFEQAIDDVSDNLMKMKQTTRPELYLEILAVK-IASRL 344 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQR 421 + + + + + + P+ + ++ + Sbjct: 345 KKVDQKAIQAQTPSPAKTEMSSSAVLVNSNASSAESMASDFDNHPQAQVDIAEKNEKSNQ 404 Query: 422 VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 + +T+ S+ + + + V + + + + P + Sbjct: 405 MPESTEKPASQNEEPLESPSLAKTDDDSAWQVMEAAVKSELQAVKDAWPDIVADFDESVA 464 Query: 482 TPVMQQKEVVATPKALKKALEHEKTPELAAKLA 514 + V A+ K L + H + E AA+ Sbjct: 465 MLAENSEPVAASQKGLIISFNHPELAEAAARTP 497 >UniRef50_C1CYE9 Putative DNA polymerase III, subunits gamma and tau n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYE9_DEIDV Length = 762 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 152/633 (24%), Positives = 234/633 (36%), Gaps = 32/633 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS ++ RP + +VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MSAI--YQRARPIRWDEVVGQEHVKDVLRAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC +G PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-SGPLPKPCGECESCLSVRAGSHPDVLEIDAASNNSVDDVRDLREKVSLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPSHVIFILATTEPEKIIPTILSRCQHYRFRRLTA 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + +E + EP ALQL+ R A+G++RD SL ++ +A+G V+ AV Sbjct: 178 EEIAGKLSGLAAKEGVRAEPDALQLIGRLADGAMRDGESLLERMLAAGT-AVTRVAVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V + + + G ++ ++ L +L + Sbjct: 237 LGLPPGERVRGIAGALVLGDAGSALQGAAQLYRDGFAARTVVEGLVSALGTALHAELGLS 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT-------- 352 + A + L + D++ Sbjct: 297 GERLEGAD-------------VPRLLKLQAALDEQEARFARSADQQSLELALTHALLAAD 343 Query: 353 ------LLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406 + + + +P P + V Sbjct: 344 SGGAGSERAPASAPAAGIPADLVQRLNRLEKELRSLRAAGVTIPSAPTAPVADFDPVARR 403 Query: 407 ETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSAL 466 A Q L +V A + + A R + L Q V + Sbjct: 404 GPAPVREVAAQALGQVAPAAAPAAVQGSWADVVRQASMQLKAFLKPARMHAQPGYVSLSY 463 Query: 467 EKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQ 526 + A V + V P + + Sbjct: 464 DDKNAFHAKQIAGKFDDVAKLVLKVFGPVTFELIAPEGGRKVNLGGAGSHTDAPVAAPPV 523 Query: 527 VSQLSLPKLVEQVALNAWKEESDNAVCLHLR-SSQRHLNNRGAQQKLAEALSMLKGSTVE 585 + E+VA R + ++ A+ + Sbjct: 524 PEPAPVRPEREEVAPVEVAPFDPAPRRTSSRGPAFEPVDVGPQAAVPRPAVRPAGTAVAT 583 Query: 586 LTIVEDDNPAVRTPLEWRQAIYEEKLAQARESI 618 L + P R+ AR + Sbjct: 584 LDVPPPRPPVAERSQTERRVPPASPDDVARAPL 616 >UniRef50_B9I1H1 Predicted protein n=4 Tax=rosids RepID=B9I1H1_POPTR Length = 1190 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 114/591 (19%), Positives = 231/591 (39%), Gaps = 56/591 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +++ P+TF D+VGQ AL+N ++ Y+F G G GKTS AR+ ++ L Sbjct: 451 HQNLTQRYMPRTFRDLVGQNLAAQALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRAL 510 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC++ PCG C++C + G+ ++ E+ S + DLLDN+ + +++V Sbjct: 511 NCQSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRV 570 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L+ ++A+ K ++ P V F+L + LP I+SRC +F L Sbjct: 571 FIFDDCDTLAPDCWSAISKVIDRAPRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDAD 630 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V ++G Sbjct: 631 IIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQK-ISVPLVQELVG 689 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 690 LISDEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGSYDF 746 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + R ++ +TL K+L + D+ + LL+ Sbjct: 747 TKERPRRKFFRRNPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 806 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + +P+A + AR+ +RV Sbjct: 807 LLPSSSTETSFNHSPLALNNMGG--------------------------RDIARKGGERV 840 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 + + P +A + + T+ + +A ++ + + Sbjct: 841 EMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTSVQTSDAV 900 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 V ++ + K + + W + ++ + + E + Sbjct: 901 RVNGRQVSGKSRKGHE----------------------EIWLEVLEKIQINSMREFLYQE 938 Query: 543 ----AWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIV 589 + + V L S L + + +A + GS V + I Sbjct: 939 GKLISVSFGAAPTVQLIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIR 989 >UniRef50_Q1IWF5 DNA polymerase III, subunits gamma and tau n=3 Tax=Deinococcus RepID=Q1IWF5_DEIGD Length = 737 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 141/520 (27%), Positives = 218/520 (41%), Gaps = 21/520 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L ++ RP + VVGQEHV L L GR+ HAYLFSG RGVGKT+ ARL+A Sbjct: 1 MS--ALYQRARPINWDQVVGQEHVKDVLKAALEQGRVGHAYLFSGPRGVGKTTTARLIAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 NC TG + PCG C++C + G D++EIDAAS V+D RDL + V A RG Sbjct: 59 TANC-TGPSPKPCGECESCLAVRNGSHPDVLEIDAASNNSVDDVRDLREKVGLAAMRGGK 117 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+Y++DE HM+SR +FNALLKTLEEPP HV F+LATT+P+K+ TILSRC + + L Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPAHVIFILATTEPEKIIPTILSRCQHYRFRRLTP 177 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L + E + EP AL L+ R A+G++RD SL ++ +A+G V+ +V Sbjct: 178 EEIAGKLADLAEREGVRAEPEALNLIGRLADGAMRDGESLLERMLAAGT-AVTRVSVEEA 236 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 LG ++ + A+V+ + + E G ++ ++ +L Sbjct: 237 LGLPPSERVRGIAAALVQGDAGMALTGAAELYRAGFAARTIVEGLVAACAEALHAELGLE 296 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 G + A + L + D + + L A Sbjct: 297 GAGLEGAD-------------VPRLLRLQAALDEQEARFARSAD---LLSLELALTHALL 340 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQL- 419 + + P V + ++ + + T P P ++ Sbjct: 341 AADAGGGGGMVGAAAPASLPADVAQRLNRLEKEVASLRMSGTRPAPANEVPAFEPGKRRG 400 Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWK 479 A ++ + + ++ + + + RWK Sbjct: 401 GPAGEAPARAETPAPMPAAVQGSWDDVVKAASMQLKAFIKTAQKHSEPGYVSLTYEARWK 460 Query: 480 ATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIE 519 + K + LK +A Sbjct: 461 FHARQVMDKWDELSAHVLKVFGPVTLEVIPPEGQGRKAQL 500 >UniRef50_Q75K66 Os05g0529600 protein n=3 Tax=Oryza sativa RepID=Q75K66_ORYSJ Length = 1023 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 112/553 (20%), Positives = 209/553 (37%), Gaps = 19/553 (3%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF D++GQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 353 HQSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKAL 412 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ L+EI ++ D+LDNV +P + +V Sbjct: 413 NCHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRV 472 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +++D+ + L +++ + K +E P V F+L + + LP I+SRC +F L Sbjct: 473 FIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECD 531 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 532 IVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISMSLVQELVG 590 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G+E AL+ ++ ++ I A Sbjct: 591 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDIL---AGTYAF 647 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + ++ +TL K+L + D+ + A Sbjct: 648 TQERVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTA------ALLQL 701 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 P + +P S + ++T + +A P + Sbjct: 702 APDKQYVLPSSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLPRNANLGVDSDNN 761 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 T+ + ++ + + A A R++ Sbjct: 762 MAGTRR----GKGPAPTVQLMFSSRVNKSKAERSREQVLHAFESVLASAITLEIRYEPKD 817 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALN 542 +P +A + + +L +V N Sbjct: 818 DARAGHVPAISPYPEDSTSNVALRRSFTRHSSASS----RGENLIRRLQKDNVVHGANSN 873 Query: 543 AWKEESDNAVCLH 555 + + L Sbjct: 874 QTRWVQSDPHILT 886 >UniRef50_B9I3J8 Predicted protein n=4 Tax=Malpighiales RepID=B9I3J8_POPTR Length = 965 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 172/368 (46%), Gaps = 6/368 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP++F ++VGQ V+ +L +S GRI YLF G RG GKTS +R+ A LN Sbjct: 292 RSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAAALN 351 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C + PCGVC C GR D+ E+D+ + + R L+ N P RFKV+ Sbjct: 352 CLSREY-KPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKNASMPPISSRFKVF 410 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE H+L ++ +L +LE ++V F++ T + LP + +SR ++H + I Sbjct: 411 IVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDADI 470 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L +I EE + + AL +A + GSLRDA + DQ G +++ ++G Sbjct: 471 AGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQLSLLG-KRITMSLAHELIGV 529 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 + DD+ L++ + ++ + E I+ L+ ++ L+ + + Sbjct: 530 VSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVL----AGKCQD 585 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 N R+ A + + L K+L + ++ + + LL+ + Sbjct: 586 NSSEVRRKFSRKHASEGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEASP 645 Query: 364 PLPEPEVP 371 Sbjct: 646 MDVNDSKS 653 >UniRef50_A3DH83 DNA polymerase III, delta prime subunit n=3 Tax=Clostridium thermocellum RepID=A3DH83_CLOTH Length = 329 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 146/347 (42%), Gaps = 22/347 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++GQ+ V+ +L + RI HAY+FSG G+GK+++A++ A L C+ Sbjct: 1 MDFNSIIGQKSVVESLKRFIDNNRIGHAYIFSGPEGIGKSTVAKIFASILMCDDAAVDKS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR E D ++ V++ R+L ++ P + KVYLI E + Sbjct: 61 CGNCRSCRLFENRTNPDFGVLETRGLSIGVDEIRNLQQDICIRPLYSKRKVYLIREAEKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N LLKTLEEPPE+ +LAT++ + L TI SR ++ + ++++ + Sbjct: 121 TVQAQNCLLKTLEEPPEYAVIILATSNYESLLETIRSRSVRINFAKNTFDEVKRFIVSRA 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + +A A+G + A+ L + + + A + G Sbjct: 181 GG-----DFEQADFIAAYADGVIGRAVELMESERFKELREKAIDAAVRLSG--------- 226 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ E ++ + + +++L +L + M + + Sbjct: 227 -------SDFEDMLNISRMFDENKEDVDSILDVILLFYRDLLMAGKFGNEKLLINSDKKD 279 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + A + + + R+ + + ++ VE+ L++ Sbjct: 280 IILKYAGRFSAGKLLNNIEIIEETRRNIKQNANYQLAVEVMLMKLQE 326 >UniRef50_D1IBG9 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IBG9_VITVI Length = 919 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 97/410 (23%), Positives = 180/410 (43%), Gaps = 6/410 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L +K+ P+TF +VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L Sbjct: 267 HQNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARAL 326 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C++C + G+ ++ E+ S E +LLDNV + +++V Sbjct: 327 NCPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRV 386 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ LS ++A+ K ++ P + F+L ++ LP I+SRC +F L Sbjct: 387 FIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDAD 446 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I +E + + AL+L+A ++GSLRDA +Q G +S V ++G Sbjct: 447 IIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 505 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + E G+E AL+ ++ ++ I Sbjct: 506 LISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDILAGSYDFTKE 565 Query: 303 GNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 R A ++ +TL K+L + D+ + LL+ Sbjct: 566 RL----RRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQ 621 Query: 362 RMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQ 411 M + + A + + + + + Sbjct: 622 YMLPSSSADTNRKKHAGSGMARQQSSAHSADTNRLSGKQIPGKVRKEIEE 671 >UniRef50_Q72HA7 DNA polymerase III holoenzyme tau subunit n=5 Tax=Thermaceae RepID=Q72HA7_THET2 Length = 529 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 129/347 (37%), Positives = 182/347 (52%), Gaps = 14/347 (4%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L R++RP TF +VVGQEHV L + GR+ AYLFSG RGVGKT+ ARLLA Sbjct: 1 MS--ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAM 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + C+ PCGVC +C+ +++G D++EIDAAS VED R+L + + AP Sbjct: 59 AVGCQGEDP--PCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV+++DE HMLS+ +FNALLKTLEEPP HV F+ ATT+P+++P TILSR F + L Sbjct: 117 KVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTE 176 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E+I +L IL E AL LLAR A+G+LRDA SL ++ + G ++ + V Sbjct: 177 EEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLE-GPLTRKEVERA 235 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-- 298 LG + + ++ + L G +L+ +L + Sbjct: 236 LGLPPREALAEIAASLARGKTAEALGLARRLYGEGYAPRSLVSGLLEVFREGLYAAFGLA 295 Query: 299 -------PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 P AL M A++ M LAR +++ Sbjct: 296 GTPLPAPPQALIAAMTALDEAMERLARRSDALSLEVALLEAGRALAA 342 >UniRef50_B9F6D9 Putative uncharacterized protein n=6 Tax=Poaceae RepID=B9F6D9_ORYSJ Length = 1050 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 105/563 (18%), Positives = 207/563 (36%), Gaps = 8/563 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 ++ L +K+ P+TF DVVGQ V+ AL+N + +I Y+F G G GKTS AR+ AK L Sbjct: 349 HRSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKAL 408 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC C +C G+ ++EI ++ D+LDNV +PA ++V Sbjct: 409 NCHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRV 468 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++ D+ L +++ + K ++ P V F+L + + LP ILSRC +F L Sbjct: 469 FIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECD 527 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I + L+ I E + + AL+L+A ++GSLRDA DQ G +S V ++G Sbjct: 528 IVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR-ISLSLVQELVG 586 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ + L++ + A+ + + + G++ AL+ ++ ++ I + Sbjct: 587 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRE 646 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + R ++ +TL K+L + D+ + LL+ Sbjct: 647 RL---RRKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQY 703 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRV 422 + + + + + Sbjct: 704 VLPSSSSTSLNHGVLAGSFPDRDMAIHSALEHNGNMASTSYRERRPVEHTSNSHLLSTSA 763 Query: 423 QGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATT 482 A + ++ +++ + + S + Sbjct: 764 PRANEQSRNSKIENELIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTVQLIFSSRVN 823 Query: 483 PVMQQKEVVATPKALKKALEHEKTPELAAKL---AAEAIERDPWAAQVSQLSLPKLVEQV 539 + +A + L E+ + + ++ ++ S L Sbjct: 824 KSKAENYRGQILQAFESVLRSAIILEIRYESKNDVRASHAPAVFSHGENESSNTTLRRSF 883 Query: 540 ALNAWKEESDNAVCLHLRSSQRH 562 ++ + L+ + Sbjct: 884 TKHSPLSSGGENLRRRLKKDRAS 906 >UniRef50_Q9SB72 DNA polymerase III like protein n=2 Tax=Arabidopsis thaliana RepID=Q9SB72_ARATH Length = 815 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 99/399 (24%), Positives = 183/399 (45%), Gaps = 6/399 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP++F ++VGQE V+ L + + GRI YLF G RG GKTS +++ A LN Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298 Query: 64 C-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 C + PCG+C C+ GR D++E D+ + R L+ + P RFKV Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKV 358 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++IDE +L + ++ LL +L+ +H F+L T++ +KLP +LSR ++H + Sbjct: 359 FIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDAD 418 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I +L I EE I + A+ +A ++GSLRDA + DQ G +++T ++G Sbjct: 419 ISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLG-KRITTSLAYKLIG 477 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + DD+ L L++ + ++ + E I+ L+ ++ ++ I + + Sbjct: 478 VVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII----AGNSQ 533 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + A + ++ + L K L + ++ + + LL+ Sbjct: 534 ESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSS 593 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 + Q V ++ + A + Sbjct: 594 SFATDENGRNQINKDVELSSTSSGCPGDVIKSDAEKGQE 632 >UniRef50_D1H1L3 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=4 Tax=rosids RepID=D1H1L3_VITVI Length = 875 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 163/351 (46%), Gaps = 5/351 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L++K+RP+ F ++VGQ V +L +S GRI YLF G RG GKTS +R+ A Sbjct: 151 SPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAA 210 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG+C C GR D EID + R L+ + P RFK Sbjct: 211 LNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFK 270 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ +L +L++ P+HV F++ T KLP + +SR ++H + Sbjct: 271 VFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDA 330 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I +L I EE + + AL +A + GSLRDA + DQ G +++ ++ Sbjct: 331 DIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLG-KRITMSMTYELI 389 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + DD+ L L++ + ++ + E I+ L+ ++ L+ I + Sbjct: 390 GIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDIL----AGKC 445 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + L K+L + ++ + + Sbjct: 446 QEGTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVA 496 >UniRef50_Q2NBW3 DNA polymerase III tau subunit n=7 Tax=Sphingomonadales RepID=Q2NBW3_ERYLH Length = 521 Score = 245 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 157/508 (30%), Positives = 237/508 (46%), Gaps = 9/508 (1%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-----ETGITATPCGVCDN 78 ++ LAN + R+ HA+L +G RGVGKTS ARL+AK LNC + G T PCG C+ Sbjct: 1 MVRTLANAIERDRLAHAFLMTGVRGVGKTSTARLIAKSLNCIGPDGQGGPTIDPCGQCEP 60 Query: 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 C I +GR +D+IE+DAAS T V+D R++++ V+YA RFK+Y+IDEVHMLSR++FNA Sbjct: 61 CTAIAEGRHIDVIEMDAASHTGVDDVREIIEAVRYAAVSARFKIYIIDEVHMLSRNAFNA 120 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP HVKFL ATT+ KLPVT+LSR +F L+ + + ++ + +E + Sbjct: 121 LLKTLEEPPAHVKFLFATTEVDKLPVTVLSRTQRFDLRRIPADLLQKHFGWVCEQEQVEA 180 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLGTLDDDQALSLVE 254 E AL ++A AAEGS+RD LS+ DQAIA DG+V+ V MLG D + Sbjct: 181 EDEALAMIAAAAEGSVRDGLSILDQAIAHADLDADGKVTATRVRDMLGLADKGAQRRMFG 240 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++E + + ++A I + + G+E AL+ + L HRI + QL + G + + Sbjct: 241 TILEGDAKALLAAIEDQYSLGVEPLALVRSQMELAHRITLAQLGGSLPGAVSEEEQAALT 300 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQS 374 + + +Q LL +E+ APD + +M LLR L + + Sbjct: 301 AWGEQLSQGQLHRLWQLLLKAYEEVKTAPDPLVSAQMGLLRLLHASELPDPGKLVKTLEI 360 Query: 375 FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPA 434 P P + +A + L R + A + + Sbjct: 361 LTANPPVQSPAPPPSDDPAATPTGEAGAEVPAPSDFASLVDRVEQAGHGFAASIMRLQLR 420 Query: 435 AATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATP 494 + + Q R A + E W P + ++ Sbjct: 421 VIECEERRLVFSRASSYTEEIAPQLREALLAATGQRWQLEERDWVDAPPSLMEQAEAREE 480 Query: 495 KALKKALEHEKTPELAAKLAAEAIERDP 522 + + H I + Sbjct: 481 EKKARIDGHPLVAATKTAFPDAEIIPEE 508 >UniRef50_Q9FK71 Similarity to DNA polymerase III n=2 Tax=Arabidopsis thaliana RepID=Q9FK71_ARATH Length = 900 Score = 244 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 7/397 (1%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q +K+ P+TF D++GQ V+ AL+N ++ R+ Y+F G G GKTS AR+ A+ L Sbjct: 342 HQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARAL 401 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + + PCGVC +C + G+ + E+ D +LLD + + V Sbjct: 402 NCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSF---DFENLLDKTNIRQQQKQQLV 458 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + D+ +S +N L K ++ P V F+L + LP I+SRC +F L Sbjct: 459 LIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVD 518 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 I L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V M+G Sbjct: 519 IIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTR-ISVPLVQEMVG 577 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + D++ + L++ + A+ + + G+E AL+ ++ ++ I Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDIL---AGSYDF 634 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 D + R+ ++ +TL K+L + D+ + LL+ Sbjct: 635 TKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQY 694 Query: 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQ 399 + + + V + +Q Sbjct: 695 LLPHSSSADASFNHTPLTDSDPSNHVVAGTRRDDSKQ 731 >UniRef50_Q9SN33 Putative uncharacterized protein AT4g18820 n=3 Tax=Arabidopsis thaliana RepID=Q9SN33_ARATH Length = 1057 Score = 244 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 96/425 (22%), Positives = 175/425 (41%), Gaps = 20/425 (4%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+ P+TF D++GQ V+ AL+N ++ ++ Y+F G G GKTS AR+ A+ L Sbjct: 430 HQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARAL 489 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PCG C +C + G+ ++ E+ E DLLD ++ +V Sbjct: 490 NCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP-RV 548 Query: 123 YLIDEVHMLSRHSFNALLKTLEE-PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 ++ D+ LS +NAL K ++ P HV F+L + LP I+SRC +F L Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM- 240 I + L+ I ++E I + AL+L+A ++GSLRDA +Q G +S V + Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELV 667 Query: 241 -------------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +G + D++ + L++ + A+ + + +E AL+ ++ Sbjct: 668 SIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLAT 727 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 ++ I D + R+ ++ +TL K+L + D+ Sbjct: 728 VITDIL---AGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLT 784 Query: 348 GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE 407 + LL+ + + + ++ Sbjct: 785 WLTAALLQLAPDQNYLLQRSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNR 844 Query: 408 TTSQV 412 + Sbjct: 845 PAVEE 849 >UniRef50_Q6YPF5 Os08g0120200 protein n=4 Tax=Poaceae RepID=Q6YPF5_ORYSJ Length = 799 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 168/355 (47%), Gaps = 5/355 (1%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S + L +K+RP+ F+++ GQ V +L++ + G++ YLF G G+GKTS AR+ A Sbjct: 147 SARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAAS 206 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 LNC + PCG C+ C I G +IEIDA+ LL N PA FK Sbjct: 207 LNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFK 266 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++D+ + + + ++ +LE P+ F++ T+D KLP + C + +D Sbjct: 267 VLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEA 326 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 +I +L I E + E AL+L+AR A GS+RDA+ + DQ G ++S ++ Sbjct: 327 EIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLG-KRISKSVTYDLI 385 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G + D++ L L+ ++ ++ E + ++ LL ++ L+ I + Sbjct: 386 GDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDIL----AGRH 441 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ + + I ++ + L K+L ++ + LL+ Sbjct: 442 QSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQF 496 >UniRef50_B0MFK9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MFK9_9FIRM Length = 335 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 26/353 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++F +VVG + ++ + G+I HAYL +G G GK ++A+ AK L CE Sbjct: 7 KSFDNVVGHKKIIQHFEEAIQTGQISHAYLLNGEDGSGKMTLAKAFAKALLCEKHEG--- 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHM 130 CG C CR+ + G DLI I +V++ R + + + P +K+Y++D+ Sbjct: 64 CGQCTPCRQADTGNHPDLIYITHEKYEIRVDEIRQGINETIDIKPYSSNYKIYIVDDADR 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + NALLKTLEEPPE+ LL T + +L TILSRC+ L + +QIR L Sbjct: 124 MNVGAQNALLKTLEEPPEYAVILLLTNNKDRLLETILSRCVCMSLGTVPEDQIRDYL--- 180 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 +EH + + + G+L A+ + + MLG + + Sbjct: 181 --KEHTQADEDMIDFAVSFSLGNLGKAVHVAETKEFHE----MLNEALGMLGYIHHIELH 234 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + + + L M + +++ + + Sbjct: 235 EMI------------SYLKTLTKYKEQIYDFLDIMTDWYRDMLILKTTGSVNLLIFKDKY 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +++E I + + R L + + +EM LL Sbjct: 283 RQLKEQEIYITFEGLTHIMDEIQKARVRLNANVNFEVTMEMLLLTMKENGKVW 335 >UniRef50_A5KSU9 DNA polymerase III, subunits gamma and tau n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSU9_9BACT Length = 454 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 118/291 (40%), Positives = 165/291 (56%), Gaps = 16/291 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R +T +VVGQ+H+ L L RI HA+LF+G RG GKTSIAR+LA Sbjct: 1 MS-QALYRKYRSRTLDEVVGQKHITDVLLKALQHKRIGHAFLFTGPRGTGKTSIARILAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +N +D++EIDAAS +++D RDL + V AP F Sbjct: 60 AINDLPYE--------------NDSLHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAPF 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHML+ SFNALLKTLEEPP HV F+LATT+ KLP TI+SR +FH + + Sbjct: 106 KVYIIDEVHMLTGESFNALLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSA 239 ++ L HI +E+I + AL+L+A EGS RD++SL DQ + +GD V+ + + + Sbjct: 166 AEVAKHLSHIAEQENIKIDEDALELIAEHGEGSFRDSISLLDQLGSVAGDEHVTAKMIES 225 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 LG + L+E + L++ G L+ ++L L Sbjct: 226 TLGLAPRARVEKLIELTEAHDIGGATKLLDNLEKVGTSPTVLVNQLLKALR 276 >UniRef50_D0J8L4 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J8L4_BLASP Length = 574 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 93/498 (18%), Positives = 198/498 (39%), Gaps = 27/498 (5%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 SY V + K+RP + DV+GQ V T L N + R+ LF G RGVGK + AR+LA Sbjct: 6 SYIVWSLKYRPVRWEDVIGQMDVTTILRNSIEKNRLSQILLFLGPRGVGKNTCARILASE 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 L F ++ EI VE + + +++ P G++K Sbjct: 66 L----------------------DSFSNVFEISGFLNHSVESICETIRKIRFYPKEGKYK 103 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +I++ + S+ SFN +LKTLEEPP HV F+ T+ K+ I+SRC + + + + Sbjct: 104 ILIINDFNFFSQDSFNIILKTLEEPPTHVLFIFCATEKNKINS-IISRCQVYEFRFISLR 162 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I L+ I +E I + AL L+++ GSL +AL+ ++ ++S + V L Sbjct: 163 DIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFYDQRKISRELVMEKL 222 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 G LD +++ +++ +++ L+++ G+ + + + + + Sbjct: 223 GILDTSYYFKIIDYLLDQKISQILILLDKIFQFGVSSINFISGLTKHFRDLLLSKNPETL 282 Query: 302 LGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +R I + + + KE + R+ + + + Sbjct: 283 FLLKLKKKTIQFYIQQSRKIRSSFLINALRICRQMEKESLTYKNSRLTI---EIYLIQLA 339 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + + P + ++ + P+ S ++ P + + Q+ Sbjct: 340 NCLFSIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKD 399 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + K E + + P + ++ + P + + + Sbjct: 400 PEEISIQKKDPEEISIQKKDPEEISIQKKDPEEISIQKKDPEEKKKIQYLQENWIKFIQK 459 Query: 481 TTPVMQQKEVVATPKALK 498 + + + + ++ Sbjct: 460 FSEKIHPTYLNSLKHEIR 477 >UniRef50_A6MVQ4 DNA polymerase III n=4 Tax=Rhodomonas RepID=A6MVQ4_RHDSA Length = 370 Score = 239 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 96/323 (29%), Positives = 171/323 (52%), Gaps = 2/323 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 ++ K+RPQ F +++GQ L ++ +I AYLF G G GKT++AR++AK Sbjct: 4 NHNPFHLKYRPQNFTNIIGQNSATNYLQLAIAAKKITFAYLFVGQHGSGKTTLARVMAKA 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 +NC + TPC VC+NC I GR D EIDAA T +E+ R++++ VQY+P ++K Sbjct: 64 INCTSSK-NTPCNVCENCVNIHLGRSFDFYEIDAAKNTGIENIREIIEKVQYSPIMSKYK 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +IDE HMLS ++FN+LLKTLE PP + F+L+TT K+P TI+SRC + + + + Sbjct: 123 VCIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIRDH 182 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + + ++ E + + ++ L + +GS RDAL++ + + G+ +++ +++S Sbjct: 183 DLIIGITKVVYNEKLRITNKGIENLIKITKGSFRDALNIVE-LFSVGEKKITAKSLSDKY 241 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + L+E ++ N V+ +I+ E ++ L + + Sbjct: 242 LIIPIAITNLLIEKVLSLNILEVLTIIDYIQFNNWNEEDVIDSTYNQLVTRYINNKKMNS 301 Query: 302 LGNDMAAIELRMRELARTIPPTD 324 + R+ +L + + Sbjct: 302 TNKSLFVNTKRLVDLLECLGESK 324 >UniRef50_C5YTM4 Putative uncharacterized protein Sb08g006520 n=1 Tax=Sorghum bicolor RepID=C5YTM4_SORBI Length = 1074 Score = 232 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 177/425 (41%), Gaps = 47/425 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + L++K+RP+ F ++VGQ +L+N ++ RI AYLF G RG GKTS AR+ + LN Sbjct: 409 RSLSQKYRPRAFPEIVGQNIAAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALN 468 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 C T PCGVC+ C + G+ +L E+DA++R + + LL+N+ + R+KV+ Sbjct: 469 CLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISIIKHLLENLPPSAPLSRYKVF 528 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE HM ++A +K L+EP V F+ T DP LP ++SRC ++ + Sbjct: 529 VVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKDIDT 588 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L I +E++ E AL L+A ++GSLRDA ++ DQ G +++ V+ +L Sbjct: 589 VCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLG-KKITPSLVNDLLA- 646 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + G + + +A+G Sbjct: 647 -----------------------------------GLIMDIIAGTYKLADVACCNGSAVG 671 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 +Q + L K++ + +R LL+ H Sbjct: 672 GRSLTEAE----------LERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSSD 721 Query: 364 PLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQ 423 + ++ + + S A + ++ ++ Q + Sbjct: 722 MNQQKCSTQEHHKLTNDAMSEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIA 781 Query: 424 GATKA 428 + Sbjct: 782 SHSSQ 786 >UniRef50_UPI00016B21A1 putative DNA polymerase III, gamma/tau subunits n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A1 Length = 489 Score = 231 bits (588), Expect = 7e-59, Method: Composition-based stats. Identities = 110/295 (37%), Positives = 169/295 (57%), Gaps = 17/295 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q L RK+R ++ +++VGQ+HV + L L ++ HAYL +G RG GKTS+AR+LA Sbjct: 1 MS-QALYRKYRSKSLSEIVGQDHVTSLLDRALESNKVAHAYLLTGPRGTGKTSVARILAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +D+IEIDAAS V++ RDL + AP + + Sbjct: 60 KITGLPYDIED--------------NNLDIIEIDAASNNGVDNVRDLREKALVAPIKSQK 105 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KVY+IDEVHMLS+ +FNALLK +EEPPEHV F+LATTD K+P TI+SR +++ + +D Sbjct: 106 KVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQRYNFRLIDE 165 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVS 238 + L I EE I + AL L+A GSLRD++SL DQ + +G+++ V Sbjct: 166 STVADHLAFIAKEESIKIDTDALNLIAERGGGSLRDSISLLDQIQHTESKNGEITRSDVE 225 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 A LG D+ ++ EA++ + +++ + + RGI ++ ++ + R Sbjct: 226 ASLGLATKDEINAIGEAILSGDALKIITAVRQPELRGIGAVSVADQLYNWIQRNL 280 >UniRef50_C0CSD7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CSD7_9FIRM Length = 336 Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 25/342 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F ++G E V+ L N + G++ H+Y+F G +G GK +A A L CE PC Sbjct: 11 FDSIIGHEDVVEHLKNAIETGKVSHSYIFYGDKGAGKKLMASTFAMALQCEKDGF-EPCQ 69 Query: 75 VCDNCREIEQGRFVDLIEIDAAS--RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHML 131 CD+C++ D+I++ +++ R L+ +V P +K+Y+I E + Sbjct: 70 TCDSCKKALGKNHPDIIQVTHEKPNSISIDEIRQQLILDVDIKPYNSEYKIYIIPEADKM 129 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKT+EEPP + +L T + L TI SRC++ +K +D ++ L Sbjct: 130 TPQAQNALLKTIEEPPSYAVIILLTENVDGLLPTIQSRCIRLDMKVVDDALVKDYLM--- 186 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 EH+ ++ A A+GS+ A +A S D T+ V +L ++ + Sbjct: 187 --EHLQVPDYQAEVDASYAQGSIGKAK----EAATSEDFAKMTENVLHILKNVNRMEVFE 240 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 LV+A+ E + L M+ + M + + Sbjct: 241 LVDAI------------KEISQDKQNVNDYLDMMMFWFRDVLMFKATREIDNLVFKQEIN 288 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +RE A ++ + L + L + + +E+ Sbjct: 289 YIREQASERSYEGLEKILEALEKTKTRLRANVNFDLAMELLF 330 >UniRef50_UPI0001BC30A0 DNA polymerase III, delta prime subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC30A0 Length = 329 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 25/338 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E++++ L + +S+ +I+HAY+F+G G GK +A+ A+ L CE CG C Sbjct: 7 IIGHENIISQLISAVSMSKINHAYIFNGPDGSGKNMLAKAFAQALLCE-KQGPEGCGECH 65 Query: 78 NCREIEQGRFVDLIEIDAASR--TKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C++ E G DLI I + V+D R+ L+ ++Q P G +KVY+IDE L+ Sbjct: 66 FCKQTESGSNPDLIYIRHSKENIISVDDIRESLVQDIQIKPYNGLYKVYIIDEAEKLTVQ 125 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLKT+EEPPE+ + T + TILSRC+ F+LK L + I L Sbjct: 126 AQNALLKTIEEPPEYSVIIFLTNNADIFLQTILSRCIVFNLKPLRDDVITDYLIKTYK-- 183 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 ++ + A+G L A+ L + +G + A+ LV+ Sbjct: 184 ---IADYEAKVCSSFAQGILGKAIRLFESEDFNGVK----------------EAAVRLVK 224 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + ++ + + + + + + + +++ +R Sbjct: 225 NIYSYEIYDLIEEVKMISQNKVNINDFIDILEMWYRDVILFKVTKDPNNLIFKDEINYIR 284 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + A ++ I + + + + +E+ Sbjct: 285 KSASKSSYEGLENIINGCEIAKSRIKANVNFDLAIELM 322 >UniRef50_C8W2Q8 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2Q8_DESAS Length = 358 Score = 224 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 22/348 (6%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ ++G + ++ L ++ GR+ HAYLFSG GVGK + A L+ L C+ + CG Sbjct: 29 FSQIIGHKSLIRGLEQAVATGRVAHAYLFSGQHGVGKKTTALALSASLLCDFNRSGDACG 88 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +CR++ G DL I K+E RDL +Y + + ++++ID+ ++R Sbjct: 89 KCTSCRQLVNGNHPDLHIISPDGASIKIEQIRDLQQKARYKSYQNKHQIFIIDQAEGMTR 148 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N LK LEEPPE F+L + +P+ L T++SRC K L +E+I L + Sbjct: 149 EAANCFLKILEEPPEQTVFILISAEPELLLPTVISRCQPMSFKDLGLEEISSLLIQLS-- 206 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + E L A+ A GS+ ALS + ++ + L Sbjct: 207 -GVNQEKAGLA--AQMARGSIGRALSYFNDDQQYKLREL----------------VIRLS 247 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 ++ + ++ + E + + +L + + + + S + Sbjct: 248 QSTRRSAISLLLQEVEELLGKKVNIFEMLEMLSLWYRDLLIWKSSHNEKLVFNRDKLDVI 307 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 A + + + + +L +RR +++ LL Sbjct: 308 DTEAEHYTLEKLVNALEMSEMTKYKLMRNANRRAALDVLLLSLTRLGR 355 >UniRef50_B3T5E1 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_ANIW141I9 RepID=B3T5E1_9ZZZZ Length = 480 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 122/561 (21%), Positives = 219/561 (39%), Gaps = 87/561 (15%) Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 NCREI + R +D++EID AS +++ R+L +N++++P FKVY+IDEVHML+ +FN Sbjct: 6 NCREITESRSMDVLEIDGASNRGIDEIRNLRENIKFSPMNANFKVYIIDEVHMLTTQAFN 65 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALL+TLEEPP H KF++ TTD K+P TI+SRC +F + I ++++IL+EE I Sbjct: 66 ALLRTLEEPPPHGKFIMCTTDIHKMPATIISRCQRFDFNRISSTIISDRMKYILDEEKIK 125 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ +L ++R A+GS+RDALS+ DQ I+ ++ + +S++LG + D +L A+ Sbjct: 126 YDSESLAAISRKADGSMRDALSILDQVISFAGEKIEFEQISSILGLIPYDLYFNLTTAIK 185 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM-VQLSPAALGNDMAAIELRMREL 316 E N E ++ ++ + G E ++ + L + + + ++ R Sbjct: 186 EKNAESLVQVLKHIRSLGTPLEDVVNGLNQHLRNLLIGTVQGAESSLEVNPDLQERYTAE 245 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFA 376 A+ D+ + Q L A ++ +EM LL+ L + + R Sbjct: 246 AKNWERRDLIRFSQVFSKLEPTLRRAAQPQILLEMNLLKMLEMDQCVSIENMLNNRTQNI 305 Query: 377 PVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAA 436 P + Q + + + V + + A + AA Sbjct: 306 PASK---------------PVQYEIPEVIEKMPTSVSSQNIIDDKKVENKSAPIKKEAAN 350 Query: 437 TRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKA 496 + N AL+ ++ Q +++ + A + V Sbjct: 351 PEKKNKVNGALDLKTIKSNWHQMITKIGSIKTSVAMVLEHTLPMELNNKILDVAVVDQPR 410 Query: 497 LKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHL 556 L + Q+ N + E D ++ + Sbjct: 411 F-------------------------------SLERLERNRQLIENTFAEIFDQSIRITF 439 Query: 557 RSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARE 616 L N Q+++ D P + T Sbjct: 440 ------LFNEDIQEEIKH--------------EIPDAPGIIT------------------ 461 Query: 617 SIIADNNIQTLRRFFDAELDE 637 D + + FD E+ Sbjct: 462 --KGDPVLNRVIEIFDGEILR 480 >UniRef50_A6TJF9 DNA polymerase III, delta prime subunit n=2 Tax=Alkaliphilus RepID=A6TJF9_ALKMQ Length = 329 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 22/351 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ HV+ L + + H Y+F G G+GK +A LAK L C TG P Sbjct: 1 MAFENIVGQAHVIKLLKQSIKQNTVGHGYIFEGIEGLGKHLVAFELAKALCC-TGTGDQP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 C C++C+++ D+I I K+ RDL + Q P R KVY+I++ ++ Sbjct: 60 CNQCNSCKKLSHQNHPDVIWITGEGSIKINTIRDLQKDTQQKPYESRKKVYIIEKAEKMT 119 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + NALLKTLEEPP +V +L T + L TI SRC + + ++ I+ L Sbjct: 120 VQAQNALLKTLEEPPSYVTLILLTANSHSLLPTITSRCQIIKFQPVPLDVIQAFLM---- 175 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + +L+A + G + AL L + + + + Sbjct: 176 -LEKNVDLEKAKLMATLSNGVVGKALKLLEDPSFQNQR----------------EGLIQI 218 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + + + + + E +L L + + + + + Sbjct: 219 SKDLFKKDKVAALQKFSFFEDHKESIEEILELYLVWYRDLLVYRDTQNKVLMFNIDQVEE 278 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + I I + ++ + ++ +E+ LL Sbjct: 279 IISQSNRIDLKKISNIISIIENTKENVRRNVQFQLNIEVMLLNIQEVLSSW 329 >UniRef50_B8CZS9 DNA polymerase III, delta prime subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZS9_HALOH Length = 326 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 142/347 (40%), Gaps = 25/347 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F +++GQ + L L RI+HAYLF+G GVGK +A A+ +NC + Sbjct: 1 MGFNEIIGQNGAIKILKEELRDNRINHAYLFNGRDGVGKKLLAFQFARAINCHNKVD-DS 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C C++I+ DL I+ + K++ R+ + Y P + K+Y+ID + Sbjct: 60 CGQCMACKKIDHFNHPDLKLIEPVNNSIKIDQIRNFQKEIVYKPYESKKKIYIIDGADTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLKTLEEPP + +L D KLP TI+SRC Q L + E I+ L Sbjct: 120 TLEAANSLLKTLEEPPHYAVIILLVEDLNKLPSTIISRCQQIQLSNIAREIIKEYLI--- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + L+A A GS+ DAL L ++ + + + ++ Sbjct: 177 ---NKGIGDKKAHLIATLARGSIGDALKLVEK-----------EDILLI-----REELFD 217 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + + + L + G I Sbjct: 218 FLCNLTHLRAVDIFNKSQQMVDWFQQDLPLFDLISGWFKDIIFYNQGIKDN-IVNYDFID 276 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ AR ++ + + RK + + + +++ LL+ A Sbjct: 277 KIEVQARNYRTEELISIIELIGETRKYIKANVRKDLALQVMLLKIRA 323 >UniRef50_A5KMD2 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KMD2_9FIRM Length = 331 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 25/335 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPC 73 F DVVG ++++ + N ++ + HAY+ +G RG GK +A L A L CE C Sbjct: 4 FKDVVGHKNIIKYIQNAVTADAVSHAYILNGERGSGKKLLANLFAMSLQCENRDEDGDAC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHM 130 G C +CR+ G D+I I V D R + D++ P ++K+Y+I + M Sbjct: 64 GKCRSCRQAAGGNQPDIIRIMHEKPNTIGVGDIRTQVNDDIMIRPYSSKYKIYIIADADM 123 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLKT+EEPPE+ +L T + + L TI SRC+ L+ + + ++ L Sbjct: 124 MSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMMKLRNIKDQLVKKYLM-- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + + A+G++ A+ L + ++ + V Sbjct: 182 ---EQLEVPDYKADVCVAFAQGNMGKAIMLANSEYF---NEIKEEVVH------------ 223 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + E +M + +E L + + + + + + + Sbjct: 224 -LLRNIDEMTVPDLMEAVKRCMIYKMEISDYLDMIAIWYRDVLIYKATRSVDRVVFSDQM 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 +RE A+ I+ +L + + + Sbjct: 283 KYIRERAKKSSYEGIENILDSLEKAKARMKANVNF 317 >UniRef50_A5D691 DNA polymerase III, gamma/tau subunits n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D691_PELTS Length = 335 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 137/340 (40%), Gaps = 23/340 (6%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 ++VG + AL N ++ GR+ HAYLF+G GVGK + A A+ L C CG Sbjct: 4 LREIVGHRQITGALMNAVACGRVAHAYLFAGPAGVGKKTTALAFARALLCPVPEGGDACG 63 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C CR++E DL ++ + K+E R+L Y P +G K++LI ++ Sbjct: 64 TCRQCRQVEHRNHPDLYIVNPSGATIKIEQIRELQHRAPYRPYQGGRKLFLICRAETMTA 123 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N LLKTLEEPP +L + PQ L T+LSRC Q K++ + ++ L Sbjct: 124 EAANCLLKTLEEPPHDTVLILVSDQPQSLLPTVLSRCQQCFFKSIPLSELSGSLTAR--- 180 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 L A + GS+ AL+ ++A A + Sbjct: 181 --HGLAQEEALLAAAMSGGSMGKALAYASGSLAERRNAAGALAGALKTAG---------- 228 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + + E +L ++ + + + + A A + Sbjct: 229 -------PLEALEMAGKISEDREEALLILEMLICWFRDLLVYRETEDAALLFNADRAGLV 281 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ A++ P + + + R ++ R+ +E Sbjct: 282 KKEAQSFQPGRLVEIIEDIEATRNKIEANASTRLALEALF 321 >UniRef50_A4J0K7 DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J0K7_DESRM Length = 335 Score = 219 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 22/341 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++++G + ++ L N + R+ HAYLF G G+GK ++AR A+ L CE C Sbjct: 3 RLSNIIGHQQIIQTLKNAVQKSRVAHAYLFMGPPGIGKQTVARSFAQVLLCEAPQGGDAC 62 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C +CR+ + G DL + + K+E R+L VQY P +G V+++++ ++ Sbjct: 63 GNCKSCRQTDGGNHPDLHLLRPSGVTIKIEQIRELQRQVQYKPYQGIRHVFILEKSETMT 122 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + + N LKTLEEP F+L + P L TILSRC Q ++L +++ L + Sbjct: 123 QEAANCFLKTLEEPGSATVFILLSDQPYGLLPTILSRCQQLQFRSLSNQEVSEGLRVLCQ 182 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + LA A GS+ A+ L ++AL L Sbjct: 183 -----VARDRAEELAPLASGSIGRAIQLAGGEDQW----------------PLREKALWL 221 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 V+ + + + + E + L ML + + + Sbjct: 222 VQRFPQMSQYQALQAAEELSNDRSAAVEALEIMLLWFRDLLVYHYTRQKEILINQDKIDT 281 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + E P+ + + + + ++ L + RM +E+ + Sbjct: 282 LLEQENWYAPSKVVEIIEEIKLAKERLMANANTRMALEVMM 322 >UniRef50_C4Z189 DNA polymerase n=20 Tax=Bacteria RepID=C4Z189_EUBE2 Length = 331 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 24/344 (6%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F+D+ G E + L + +S+G++ HAY+ SG G GK IA A+ L CE G PC Sbjct: 3 NFSDIYGYETIKEHLQSAISMGKVSHAYVISGGLGSGKKLIASTFAQTLQCEAG-GVEPC 61 Query: 74 GVCDNCREIEQGRFVDLIEI--DAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHM 130 GVC +C + D+I + + V+D RD L+ ++Q P +K+Y+IDE Sbjct: 62 GVCHSCVQAAGRNQPDIIWVGHEKPGSIGVDDIRDQLVSDMQIKPYSSPYKIYIIDEADK 121 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LKT+EEPP + +L +P TILSRC+ LK L + + L+ Sbjct: 122 LTVAAQNAMLKTIEEPPAYGIVILLANNPDVFLQTILSRCVVLDLKPLKDDIVIKYLKDH 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + + AR A G + A+++ + + + + Sbjct: 182 YD----NISDYECKFAARFAAGRIGRAMTMVESTEFAELRR----------------DVM 221 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 +++ + + +M + + + L ML + M + + Sbjct: 222 DVIKNAKDMDSTDIMTSVKRVTNYKLTIDDYLDLMLMWYRDVLMFKSTNDTNLLIFNDQM 281 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 ++ A+T+ +Q ++ + L + + +E+ ++ Sbjct: 282 TLIKSQAQTMSYEGLQDIINSIDRVKVRLQANVNFDLVIELLIM 325 >UniRef50_B0K122 DNA polymerase III, delta prime subunit n=10 Tax=Thermoanaerobacteraceae RepID=B0K122_THEPX Length = 324 Score = 214 bits (544), Expect = 8e-54, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 30/348 (8%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 +R + G E VL N +S +I +AYLF G G+GK +A A +NC+ G T Sbjct: 2 YR------IYGHETVLNIFKNVISQNKISNAYLFVGEEGLGKRFMAEYFAMMINCK-GET 54 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 A PC C +C ++ D+ I KV+ R + + + P K+++ID+ Sbjct: 55 AKPCFKCSSCLKVMDKNHPDVFFIKPEENSIKVDTIRYITNEINIRPYEANKKIFIIDQA 114 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + NA LKTLEEPP + F+L + Q+L TI+SRC + I++ L Sbjct: 115 DKMTAAAQNAFLKTLEEPPLYGLFILIASQQQELLPTIVSRCNIVRFNKENRNTIKNYLM 174 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + ++LA A+G+ A LT+ + + + Q + +L Sbjct: 175 F-----EHDISEKEAEVLAHIADGNFAQANKLTNNEYLNFRRE-TIQEIEKILTI----- 223 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 G V+ E +L +L + + + + + A Sbjct: 224 -----------KGFEVIEEFEFFDKNKDNIEEILKILLSYMRDLLVFKATKDASFIKNID 272 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 R++E+ + + + ++ + ++ VE L Sbjct: 273 FLNRIQEMESRLTINKLNNIINRIEQFNSQINSNINYQLAVENLFLDM 320 >UniRef50_C4GC81 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC81_9FIRM Length = 330 Score = 214 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 144/347 (41%), Gaps = 25/347 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD++GQE + L N L ++ HAY+ SG G GK +A A+ L CE A Sbjct: 1 MRFADIIGQEELKGHLQNALQNQKVSHAYIISGEEGSGKRMLAEAFAQTLLCEEK-GADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR+ D+I + V+D R + ++ P +KVY++DE Sbjct: 60 CGHCHHCRQTMSHNQPDIIYLTHEKPATISVDDIRSQINSDIVIRPYNSDYKVYIVDEAE 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + NALLKT+EEPP + LL TT+ Q TI SRC+ K + +R +L Sbjct: 120 KMNEQAQNALLKTIEEPPSYAVILLLTTNAQAFLPTIRSRCILLETKPVPDALVRGELMK 179 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + A+G++ A++L + + Sbjct: 180 RYE-----IPDYQADMSVAFAQGNMGKAIALAQSQEFADRK----------------EMV 218 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E +A I E A+ L ++ + + + + A A Sbjct: 219 LSLIRHISEMTYADRIAWIREMEAKKEPLTDYLDLLMVFYRDVLLYKATGQADRLIFADQ 278 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 +++ LA + ++ ++ + R++ + + ++ + R Sbjct: 279 VYQVKRLADGLSYRHLEEIFEGVESCRRKDAANVNTDLILQQLMERM 325 >UniRef50_Q1PVI5 Similar to DNA polymerase III clamp loader small subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVI5_9BACT Length = 354 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 16/354 (4%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +FA ++GQE VL+ N L R+ HAY+F+G G+GK AR LAK + C++G Sbjct: 8 MSFAKIIGQEQVLSLFKNALKNERLAHAYIFAGQEGIGKMLFARELAKKIFCQSGKIDGA 67 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 C C+ C+ I+ G F D+ + K+E + L + + P + K+ +I++ Sbjct: 68 CDNCNICKRIDAGNFTDIFFLLPEKNHRVIKLEQLKYLQEILFVKPLESKHKIVIIEDAD 127 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLKTLEEPP + LL T + + TI SRC L ++ + + L Sbjct: 128 KMNEEASNCLLKTLEEPPLYAIILLIVTSLESVSETIKSRCQVVRFSPLSLKAMENILTD 187 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + + LA + GSL+ A + A A + + + + + Sbjct: 188 R-----FQLDKQLAGQLALISGGSLKRAAMFME-ANALEKKHWLAEKLFEVSLKDNLTFS 241 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L+ + E + + L + L I + + Sbjct: 242 KELLNEWNIQDME-------VLEEKRSHVKELFLLFLMYYRDILICKAGGEHFLLYYDDW 294 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + ++++ + + + K L Y + + +E + L Sbjct: 295 KDALIAKSKSMSEKTLFKILERIKTSLKYLDYNANINLLIENMITEILYLQSDP 348 >UniRef50_B3L0H3 Replication factor C, subunit 2, putative n=7 Tax=Plasmodium RepID=B3L0H3_PLAKH Length = 330 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 123/333 (36%), Gaps = 33/333 (9%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M K+RP+ D+V Q + ++ L + + H +F G G GKTS LA Sbjct: 1 MDNLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPH-LIFHGPPGTGKTSAINALAH 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 L ++E++A+ + R+ + Sbjct: 60 ELFGRD------------------NISERVLELNASDDRGINVVREKIKAYTRISISKNK 101 Query: 119 ----------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E +F+L K+ I S Sbjct: 102 INSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYS 161 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC + + + ++ + +L +I E I AL + +G LR A+S+ Q + Sbjct: 162 RCSCYRFQGIPIDVKKEKLLYICKSEGINILDDALDKIIETTQGDLRRAVSIL-QLCSCI 220 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 D ++ ++V + G DD +++A + + V + + G + + + Sbjct: 221 DPMITLESVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNY 280 Query: 289 L-HRIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + +++ + R+ A Sbjct: 281 FVMNTEYQDSVKSQILLELSRHDYRLHSGATKY 313 >UniRef50_D0JBQ2 DNA polymerase III subunit gamma/tau n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBQ2_BLASB Length = 501 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 171/379 (45%), Gaps = 17/379 (4%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 VLA K++P + +++GQE++ L + R+ F G +GVGK + A +LA LN Sbjct: 9 IVLADKYKPLKWDELIGQENISITLKKAIQENRLSQVLFFFGPKGVGKNTCAHILANELN 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 + + ++ EI+ ++ ++D +Y+P RG++ ++ Sbjct: 69 SFSE---------------FKDISLNTFEINGFFHNSLKCIHRIIDTSRYSPKRGKYNIF 113 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +I E+H S+ F+ LK +EE H+ F+ T+ + +P ILSRC + ++L V++I Sbjct: 114 IIKEIHKFSKDVFDFFLKFIEEKHPHILFIFCGTEEKIVPEFILSRCQVYEFQSLSVKKI 173 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L+ I +E+I E AL LL++ EGSL A+ L D+ I+ ++S + LG Sbjct: 174 FFHLKMIAEKENIEIENEALLLLSKHVEGSLSKAIHLFDRFISCDGQKISKYFIMNKLGI 233 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-AL 302 D +V+ +++ N +++ L+++ + I+ L+V + + + S ++ Sbjct: 234 FDVKYYFEIVDYLLDENVNKILILLDKILQKKIDSYNLVVGFTKHFRNLFLSKNSETISI 293 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRALAFHP 361 I E ++ I + L KE + R+ VE+ L++ F Sbjct: 294 LKFKKEIIQSYIEQSKKISFFFLIHALSIFLRLEKEYRLNNQNLRLTVEIHLIQLAHFFS 353 Query: 362 RMPLPEPEVPRQSFAPVAP 380 + + Sbjct: 354 IHKKNHKNSSIEKNSQEFH 372 >UniRef50_Q2LUA9 DNA polymerase III, gamma subunit n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUA9_SYNAS Length = 329 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 24/344 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D++G + L N + R+ HAYLF G GVGK ++A AK LNC G + Sbjct: 6 MSFKDILGHAKPIGILQNAIQHNRMAHAYLFHGMAGVGKLTLALNFAKALNCLQG-ASDA 64 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +C + + D+ I+A + +++ +DL + +++ P G+ +V ++ + L Sbjct: 65 CDCCISCIKTDHRNHPDIEMIEAEGQYIRIDAVKDLQERMKFKPMEGKKRVAILVDADRL 124 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP +L T P +LP+TILSRC Q L E + L Sbjct: 125 NNAAANALLKTLEEPSPANILILVTDRPYQLPITILSRCQQIRFNPLAQEIVTTLL---- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + E LLA A+ GS+ AL L +A + + L+ Sbjct: 181 -HERFSVENTQAGLLAAASGGSIGKALDLNREAYLTLKNE-----------------VLN 222 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + + + + + L + + +++ + A G Sbjct: 223 FIAGISADSSLHRLTFLRFLSDDKRDIMDKLDILRTFFRDVLILRETGRAEGLMHQDRVD 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ A DI + + + L ++ + +E+ + + Sbjct: 283 QITAFAGKRTTGDILTAIRAIDSAERRLIQNTNKSLTLEVMMFK 326 >UniRef50_A8SS16 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS16_9FIRM Length = 330 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 153/349 (43%), Gaps = 25/349 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F +++G E ++ + + LG+I Y+ +G G GK ++ R L K L CE G T PC Sbjct: 4 FTEIIGHEDIIRHFKSSIELGKISQGYIINGETGSGKKTLTRALVKTLQCEEGGT-EPCN 62 Query: 75 VCDNCREIEQGRFVDLIEI--DAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHML 131 C +C + E G D+I + D + VE+ RD + ++ P R+K+Y+I++ +L Sbjct: 63 HCKSCLQCETGNQPDIIWVTHDKPNVISVEEIRDQVNSDIDIKPYSSRYKIYVIEDAQLL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ NALLKT+EE P + +L T + K+ TI SRC+ ++K + I L + L Sbjct: 123 NVNAQNALLKTIEEAPSYAIIILLTNNIDKMLQTIQSRCIVLNVKPVREHDILDYLMNEL 182 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + A+G+L A+ L A + ++ + + Sbjct: 183 K-----LDKQKADFCMDFAQGNLGKAIRL---ATSDEYREI-------------KENVVK 221 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + E + + ++ I ++ + M+ + M+++S Sbjct: 222 IMRHLREMSVDDMLFAIKNMELYKLKISDYIDLMMMWYRDVLMLKVSNNPGRLMFKEYYS 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 +R+ + I I+ +++ + L + +E+ LL Sbjct: 282 DIRKQSSHISYEGIEKVLKSMDKAKVRLEANVSFDIAMELMLLTMKENC 330 >UniRef50_C8NR93 DNA polymerase III, gamma and tau subunits n=5 Tax=Corynebacterium RepID=C8NR93_COREF Length = 704 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 113/550 (20%), Positives = 189/550 (34%), Gaps = 75/550 (13%) Query: 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 D+ E+DAAS V+D R+L + YAPA R++V++IDE HM++ FNA+LK +EEPPE Sbjct: 12 DVTELDAASHNGVDDMRELREKAHYAPAESRYRVFIIDEAHMITPQGFNAMLKIVEEPPE 71 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 H+ F+ ATT+P K+ TI SR + + L +R LE E + + L+ R Sbjct: 72 HLIFIFATTEPDKVIGTIRSRTHHYPFRLLTPGAMRGLLERTCRAEGVHVDDAVYPLVIR 131 Query: 209 AAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 A GS RD+LS+ DQ +A +G +S ++ +LG D + + A+ + + A Sbjct: 132 AGGGSPRDSLSILDQLLAGAGPDGLSYESALPLLGVTDFTLIDAAITALATDDKAGMFAT 191 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN----DMAAIELRMRELARTIPPT 323 I+ G + ++L L + ++Q P A + + A Sbjct: 192 IDRVIEAGHDPRRFATDLLDRLRDLMILQTVPEAFDLGLVDAPTDRAQVLTDQAAMFSGN 251 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAV 383 ++ + G +L A R+ +E+ +R L A Sbjct: 252 ELATLASMVNTGLADLRGATSPRLLLEILCVRLLL------------------SRGQVAQ 293 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 + V +A APT P + A+ + + +P P Sbjct: 294 VIAPAVGATQPAAAGTAPTFSGPGGAAAAARAKALAASQSYGQRPEPKKPEPEPVKEPEP 353 Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH 503 A E + PVP + A P ++ K K+ + Sbjct: 354 APAPEPAPEPVKAPEPAPVPEPAPEPEPATPAVPTADLLPTIRSKWAQLRTLVGKENIRT 413 Query: 504 EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS--QR 561 E + + + L + Sbjct: 414 EI--------------------------------MLTEAKVLGIRQDTLVLGHSTGALAN 441 Query: 562 HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPA------------------VRTPLEWR 603 LN + L L G+ + + V +P+ TP E Sbjct: 442 RLNAPEHNEVLVTVLERELGTRLAVECVVGTDPSAVGFTTTSQPEQPTWNPTRPTPQEQS 501 Query: 604 QAIYEEKLAQ 613 Q Sbjct: 502 AQQQMPSQPQ 511 >UniRef50_B5YD97 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YD97_DICT6 Length = 326 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 131/335 (39%), Gaps = 28/335 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ+ + L ++ ++ YLF G GVGK A + LNC+ Sbjct: 1 MAFKEIVGQKQAIEVLRRAINENKLSQTYLFVGPEGVGKRLTAISFVQALNCKVEPL-EG 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG CD C+ IE+ + DL + + K++ RD+ P +KV+++D+ H L Sbjct: 60 CGECDICKSIEKLSYPDLFYLKPEGQWYKIQQIRDIRKEAYVKPYISNWKVFILDDAHQL 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 NALLK LEEPPEH F+L P+ L TI+SR L +++ ++ Sbjct: 120 RAEGANALLKILEEPPEHTLFILIAYRPELLLPTIISRSQIISFSYLSYDEVWQIIKD-- 177 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L++L ++GS+ AL ++ + + Sbjct: 178 -----KVSEDKLEILVNLSQGSVGKALFWGEENNWTKRIE-----------------LFK 215 Query: 252 LVEAMVEANGERVMALINEAAARGIE--WEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 + + + L++ + LL +L + + +L+ Sbjct: 216 YLTLLKKDRPYSPFELVDFLVEEKDDEKIINLLELVLFWWRDLLLWKLTEDEKYIMQKDF 275 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + A+ +D++ +++ + + + Sbjct: 276 LPEIARKAQEYSVSDLRNFFRLTQDAIRGIRNNAN 310 >UniRef50_Q3A3X2 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=Q3A3X2_PELCD Length = 321 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 140/345 (40%), Gaps = 26/345 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ V+G + L +S R+ HAYLF G G+GK +A L K L C CG Sbjct: 2 FSRVLGHQRQKDLLEKAVSSKRLPHAYLFEGPEGIGKRLVALALTKILFCAN---GNSCG 58 Query: 75 VCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C +++ DL ++ S K+E R L + Y P +KV +ID ++ Sbjct: 59 DCPACHKVDHHNHPDLHQLGPDGSSIKIEQIRALQKELSYRPLEAPYKVSIIDGAEKMNP 118 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEP +L T P + TI SRC + + E+++ L Sbjct: 119 AAANALLKTLEEPRSQTLLILLTPAPDAVLPTIRSRCQRLPFSRIPRERLQEVLV----- 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E + E +LA +EGS + AL + ++ + Sbjct: 174 EQLNIEDAQAHILATLSEGSFKKALGKDRELYLQRRKELLKN-----------------L 216 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 A+ + ++ L + A +L + + ++Q + + Sbjct: 217 TALSSGSIIPLLNLAQKFAEEKDLLFDILEIIQAFYRDLLLLQHGRPMDDLVNVDMLETL 276 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + ++R + + L+ R+ L +R++ +E+ LLR +A Sbjct: 277 QSVSRRENVSSLLGKLDALMTSRRHLERNVNRQLAMEVLLLRLVA 321 >UniRef50_C6PER6 DNA polymerase III, delta prime subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PER6_CLOTS Length = 320 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 136/337 (40%), Gaps = 26/337 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G +++L +S +I +AYLF G G GK +A+ A +NC+ G + PC C Sbjct: 4 IYGHKNILALFNKIVSSQKIANAYLFIGESGFGKEFMAKYFAMMINCKNG--SKPCLSCP 61 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHS 135 +C ++ G D+ I+ KVE R++ ++N P K+++I E ++ + Sbjct: 62 SCIQMISGNHPDIFFIEPDGISIKVETLRNVVINNAYVKPYNSYKKIFIIKEAEKMTEQA 121 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N++LKTLEEPPE+ F+L ++ + L TI+SRC E I L + Sbjct: 122 QNSILKTLEEPPEYGLFILTSSKMEGLLPTIVSRCEIIRFTRESDEVIEDYLINEKK--- 178 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + + +A A G+ A L D+ + + + LG + + Sbjct: 179 --IDRSKAKKIASIANGNYGKANLLIDEGYSR---------IRSELGDILYNVI------ 221 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + ++ M L + +++L + + ++++ Sbjct: 222 --NQDKALRLESFKFFDENREMIDDIIDIMFSYLRDLMILKLLGSEEYIINKDMVDKLKD 279 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + + L + ++ +E Sbjct: 280 FSDNLTGFKLNNIINEIGELAFNLKSNVNYQLAIEKF 316 >UniRef50_A6US36 Replication factor C small subunit n=15 Tax=Euryarchaeota RepID=RFCS_METVS Length = 315 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 25/335 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + K+RP+ +VVG + ++ L N + + H LFSG+ GVGKT+ A LAK L Sbjct: 2 QKPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPH-LLFSGSPGVGKTTAALCLAKDL 60 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR-GRF 120 T + +E++++ ++ R + D + P F Sbjct: 61 YGNTWKE-------------------NFLELNSSDERGIDVIRTKVKDFARTKPIGDAPF 101 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +DE L+ + NAL +T+E+ + +F+L+ P K+ I SRC F L Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E + L+ I +E I E + + +EG +R A+++ Q A+ ++ + + Sbjct: 162 EDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVL-QTGAAVSKNINETVIYKV 220 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSP 299 D+ + E + + + G+ E +++++ + + + + Sbjct: 221 ASKARPDEIKKMTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEK 280 Query: 300 AALGNDMAAIELRMRELA-RTIPPTDIQLYYQTLL 333 L + + R+ E A I + + L Sbjct: 281 VHLVEAIGECDFRIVEGANERIQLSALLAKMGILE 315 >UniRef50_P40937 Replication factor C subunit 5 n=102 Tax=Eukaryota RepID=RFC5_HUMAN Length = 340 Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 139/336 (41%), Gaps = 24/336 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RPQT D++ + +L+ + ++ R+ H L G G GKTS AK L Sbjct: 20 LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPH-LLLYGPPGTGKTSTILACAKQLY 78 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR-FK 121 + + ++E++A+ ++ R +L + FK Sbjct: 79 KDKEFGS------------------MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK 120 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE +++ + NAL + +E+ E+ +F L K+ + SRC +F L E Sbjct: 121 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 180 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + +LEH++ EE + ++ L + G +R AL++ Q+ G+V+ + V Sbjct: 181 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNIL-QSTNMAFGKVTEETVYTCT 239 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPA 300 G ++++ M+ + I E +G+ +L E+ +HR+ Sbjct: 240 GHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRI 299 Query: 301 ALGNDMAAIELRM-RELARTIPPTDIQLYYQTLLIG 335 L MA IE R+ I + + +Q Sbjct: 300 HLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDL 335 >UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Thermoprotei RepID=RFCS1_PYRIL Length = 329 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 147/348 (42%), Gaps = 26/348 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ K+RP++F +VV E V + L + G + H LF G G GKT++A +LA+ Sbjct: 1 MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPH-LLFYGPPGTGKTTMALVLAR 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPA-RG 118 L E T +E++A+ + R+ + + + AP + Sbjct: 60 ELYGEYWRENT-------------------LELNASDERGINVIRERVKEFARTAPVGKA 100 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 FK+ ++DE ++ + AL + +E ++ +F+L ++ I+SRC F + Sbjct: 101 PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPM 160 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + +L++I E + + A+ L+ +EG +R A+++ Q A+ + V V+ Sbjct: 161 PRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINIL-QVAAATNKIVDRNVVA 219 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQL 297 A + + L + + + + E +G+ + L R+++ Sbjct: 220 AAAAAIRPTDIVELFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDE 279 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + A + +A ++ R+ + A + + L K++ A Sbjct: 280 TKAEVAELLADVDYRLTQGADE--EIQLSYFLAKLGSIGKKIRAASLP 325 >UniRef50_Q2NH89 Replication factor C small subunit n=3 Tax=Archaea RepID=RFCS_METST Length = 321 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 136/354 (38%), Gaps = 43/354 (12%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RPQT DVVGQE ++ L + + + +F+G GVGKT+ A LAK L Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPN-IMFTGFAGVGKTTCALALAKSLLG 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVY 123 E + +E++A+ ++ R ++ + F++ Sbjct: 63 EYWQQ-------------------NFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRII 103 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 +DEV +++ + AL + +E + F+L+ K+ I SRC F + I Sbjct: 104 FLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANI 163 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 +L++I +EE I E AL+ + +G +R ++++ QA + + V+ +AV ++ Sbjct: 164 IKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINIL-QASTTTENTVTEEAVYDVISR 222 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303 ++ + + LL I +++ Sbjct: 223 AKPKDVRKIINKALNHDFMEARD---------------------LLRDIMIIEGVSGDDL 261 Query: 304 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 E+ IP + + + + + R+ +E L + L Sbjct: 262 ITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNPRLQLEALLSKFL 315 >UniRef50_A5G697 DNA polymerase III, delta prime subunit n=7 Tax=Geobacter RepID=A5G697_GEOUR Length = 320 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 144/344 (41%), Gaps = 29/344 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ ++ L L+ GR+ HAYLF GT GVGK + A L + + C Sbjct: 1 MPFSHILGQNSAISILQRSLATGRLAHAYLFEGTEGVGKKATALALIEAVFCGKEEG--- 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR+I + DL ++ K++ RDL ++ Y P K +ID Sbjct: 58 CGACPSCRKIAALQHPDLHLVEPDGAFIKIDQIRDLQKDLAYRPFEAPKKACIIDGAERF 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ + NALLKTLEEPP + +L T + TILSRC + H + L E I L Sbjct: 118 NQAAGNALLKTLEEPPGNALIILVTAQSSGVLPTILSRCQRLHFQTLPEETIAAYLGR-- 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + A ++ A A GS++ AL + D + Q + ++G + Sbjct: 176 ----NGIDGEAARIAASLAGGSMKKAL-EISKETTLSDRK---QFLERLIGLSLRE---- 223 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + E AA + LL + L I +++ G A + Sbjct: 224 ---------ITPLFSAAEELAADKDKVMELLELLTSFLRDILLLKGGGE--GIVNADLLP 272 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A + T I + R L + R+ +E+ +R Sbjct: 273 ILEREAGRLSQTGIMERIGHVAAARHALLRNVNARLTLEVLFMR 316 >UniRef50_P40348 Replication factor C subunit 2 n=18 Tax=Dikarya RepID=RFC2_YEAST Length = 353 Score = 206 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 63/348 (18%), Positives = 132/348 (37%), Gaps = 47/348 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + Q K+RP+ +V Q+H +T L L + H LF G G GKTS L K Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKE 81 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR-- 119 L + + ++E++A+ + R+ + N Sbjct: 82 LYGPDLMKSR------------------ILELNASDERGISIVREKVKNFARLTVSKPSK 123 Query: 120 ----------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 +K+ ++DE ++ + +AL +T+E +F L ++ + SR Sbjct: 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASR 183 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA----- 224 C +F KALD +L I +E++ + L+ + + G LR ++L A Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 +++ V + G + D + +VE + + + + +N G +++ + Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303 Query: 285 MLGLL-----------HRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + ++I+ + + + N+ +++ L I Sbjct: 304 LHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351 >UniRef50_A7ATE5 Replication factor C3 protein, putative n=3 Tax=Piroplasmida RepID=A7ATE5_BABBO Length = 348 Score = 204 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 69/362 (19%), Positives = 137/362 (37%), Gaps = 43/362 (11%) Query: 1 MSYQ---VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ K+RP++F+D++ + +L+ L N G++ H LF G G GKTS Sbjct: 1 MNAVLGVPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPH-LLFHGPPGTGKTSTIMA 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA- 116 +++ L R ++E++A+ +E R+ + Sbjct: 60 VSRYLYGSH-------------------RHSYVMELNASDERGIETVREQIKTFAETSNT 100 Query: 117 ------------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 R K+ ++DE ++ + N+L + +E +V+F L ++ Sbjct: 101 FSSGIVGSDSGPRTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIP 160 Query: 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-- 222 I SRC F L + ++ + I E + AL LA +G +R L+ Sbjct: 161 PIQSRCTGFRFPPLKNDVVKRRTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVT 220 Query: 223 --QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWE 279 A+ D +++ V + G + + L++ +++ + + + + +G E Sbjct: 221 AMSIGATRDKVITSDVVISTAGLPNPTEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVE 280 Query: 280 ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 L+ + + RI + L + IE R+ A P I R E+ Sbjct: 281 DLVTALYRSILRIDWPNVVIVQLLIRLGDIEQRLSAGAS--PYIQIASLVSAFAEVRLEI 338 Query: 340 PY 341 Sbjct: 339 ER 340 >UniRef50_A0LEK6 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK6_SYNFM Length = 335 Score = 204 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 139/342 (40%), Gaps = 25/342 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D+ GQE L G + HA LFSG GVGK +AR LAK +NC Sbjct: 1 MSFKDIPGQERTKRLLKRMARAGTLPHAVLFSGMAGVGKLRVARELAKLVNCLEPRDDES 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+I++G DL I + K++ R+L + V++ P GRF+V +I+ L Sbjct: 61 CDRCISCRKIDEGHHPDLFVIRSEGTFIKLDRIRELRERVRFRPFEGRFRVVIIENAQHL 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 S NALLK LEEPP FLL +PQ L TI+SRC L+ L+ E I +L L Sbjct: 121 HDESGNALLKVLEEPPRANLFLLTAIEPQMLLPTIVSRCSHLRLQPLEDEVIAGELAASL 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + L R + GSL A L + S ++ Sbjct: 181 K-----IPEAQARELTRLSGGSLDRAQWLAREEHLSHWKEIVEN---------------- 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + V+A+ A + + E L + + + + ++ Sbjct: 220 -LRKSERSGTADVLAMAGRWAQQKEDLEQDLECVKLWVRDLLLSRVIDGYRQAFEPDDPC 278 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + P + Y + L ++++ +E Sbjct: 279 AVCG--GEVSPDSLLTLYDRVEESIGRLRGNANKQLVMESIC 318 >UniRef50_Q67JB2 DNA polymerase III delta' subunit n=1 Tax=Symbiobacterium thermophilum RepID=Q67JB2_SYMTH Length = 332 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 134/337 (39%), Gaps = 24/337 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T++ + GQ + L ++ GR+ HAYLF+G GVGK +A LA+ LNC Sbjct: 1 MTWSAIRGQRMAVDLLRRAVAGGRVAHAYLFAGPAGVGKRLVALELARSLNCLEPRAGEA 60 Query: 73 CGVCDNCREIEQG--RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C ++ D+ ++ R + E R + + V P GR+KV +ID Sbjct: 61 CGACRSCLKLSAEPPVHPDVTVVEPEGRMIRTEQMRQVQNEVYARPTEGRYKVVIIDGAE 120 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ S N LLK LEEPP + F+L TT+ + TI+SRC H L E I L Sbjct: 121 RMNAESGNRLLKVLEEPPPYACFVLLTTNAAGVLPTIVSRCQIVHFSPLPAEAIAAVL-- 178 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E P +L A + GS+ AL++ D+A Sbjct: 179 ---QEKAGIGPGEARLFASLSGGSVGAALAMAANPEVGRRR----------------DEA 219 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 LSL+ + E + ++ E L L +V A Sbjct: 220 LSLLLRLGEMDDADLLEQAAAWEKEKDHLEERLEMAAFWLRDALLVAREAPERLVVNADR 279 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 +R LA + ++L R L + R Sbjct: 280 LPEVRTLAGRYGGEGLVAALESLSRARDALLRNGNAR 316 >UniRef50_B8I4J3 DNA polymerase III, delta prime subunit n=2 Tax=Clostridium RepID=B8I4J3_CLOCE Length = 322 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 25/345 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G + +++AL + + HAY+F G GVGK + A A L C PCG C Sbjct: 1 MLGHQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASMLMCREDQF--PCGECK 58 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +C+ + D EI VE+ R++L + P +KV +I++ ++ + Sbjct: 59 SCQLYREASNPDFQEIIQKDKSISVEEIRNILKGLVIRPLYSDYKVIIINDADTMTIQAQ 118 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK+LEEPP +V F+L + TI SRC + L E I +E Sbjct: 119 NALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRILFNRLSHEDIMEIMES-----KY 173 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + A+G AL L + + ++ L + Sbjct: 174 GPRQSDWEFIVSYADGVAGTALELAESPHSLE----------------LREEVLEFTSRL 217 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 V + +L +L + + + + + + + Sbjct: 218 VSDRDADPFKFYETFEKNNDRVDYILHVILLYFRDLLIYKETGDTSLLINSDKKDMIIRN 277 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + I Q + R+ L + ++ +E+ L++ Sbjct: 278 VE-LSFSHIIKCIQAVWDARRGLGNNANFQLAIEVMLMKIQKADN 321 >UniRef50_A5Z3R5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3R5_9FIRM Length = 346 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 68/353 (19%), Positives = 144/353 (40%), Gaps = 37/353 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-------- 67 ++GQ H+L N + +G+I HAY+ +G G GK ++A AK L CE Sbjct: 4 ERILGQNHILRHFENAIRMGKISHAYIINGEEGSGKMNLAIHFAKALQCERNNSNKAINE 63 Query: 68 ------ITATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRD-LLDNVQYAPARGR 119 + T CG C +C++ + D+ I V++ R+ + D++ P Sbjct: 64 DGERITVPGTACGQCKSCKQTDSKNQPDIKYITYEKSGIGVDEIREQINDDIDIKPYSSP 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +K+Y++ E ++ + NALLKT+EEPPE+ +L TT+ TILSRC+ +++ + Sbjct: 124 YKIYIVPESEKMTVQAQNALLKTIEEPPEYAIIILLTTNADTFLQTILSRCVMLNIRPVK 183 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + I++QL ++ A + G+ A+ L +++ Sbjct: 184 EDIIKNQLTS-----QYGVGDYEARVAATFSNGNPGKAIKLA-----------TSEEFKE 227 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + + + ++ + + + I + + + M I + + + Sbjct: 228 L-----KQYVVGMFMSLEKGGMDIIGEAIKKTGTFKKQIDEYFSLMRIWFRDILVYKATK 282 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + ++++T DI + + + + + +E+ Sbjct: 283 EEDQIIFQDEYMTIEKMSQTYSFDDINDILKAIDLAESRIKSNVNFDSTIEIL 335 >UniRef50_Q54MD4 Probable replication factor C subunit 4 n=37 Tax=Eukaryota RepID=RFC4_DICDI Length = 347 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 121/296 (40%), Gaps = 29/296 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+T DV QE V++AL L+ G + H LF G G GKTS +A + Sbjct: 10 EPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPH-LLFYGPPGTGKTSTILAIAMDIY 68 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR------ 117 + ++E++A+ +E R + N Sbjct: 69 GPELMKQR------------------VLELNASDERGIEVVRTKIKNFAGYAVNKTTTGT 110 Query: 118 ----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FK+ ++DE ++ + AL +T+E + +F L ++ + SRC +F Sbjct: 111 SNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKF 170 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 K LD +L+ I +E I E Q + + G +R A++ A ++S Sbjct: 171 RFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKIS 230 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + G+L LV+ + + +R+ +++ A+G ++ ++ + Sbjct: 231 EDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYV 286 >UniRef50_P38629 Replication factor C subunit 3 n=10 Tax=Saccharomycetales RepID=RFC3_YEAST Length = 340 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 127/295 (43%), Gaps = 27/295 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+T +V GQ V+T + + G++ H LF G G GKTS LA+ + Sbjct: 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGR-FK 121 + ++E++A+ ++ R + D + FK Sbjct: 72 GK-------------------NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE ++ + NAL + +E ++ +F + KL +LSRC +F + L E Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQE 172 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----QVSTQAV 237 I ++ ++L E + P A + L + G +R L++ A+ D ++S + Sbjct: 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 232 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHR 291 G +++++++E + +N+ A+G+ L+ ++ +L Sbjct: 233 YECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED 287 >UniRef50_B5JD26 DNA polymerase III, subunits gamma and tau n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD26_9BACT Length = 297 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 149/304 (49%), Gaps = 10/304 (3%) Query: 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G +D++EID AS VE R L ++ QYAP++G++KVY+IDEVHMLS +FNALLK Sbjct: 1 MNGTCMDVLEIDGASNNGVEQVRALREDAQYAPSQGKYKVYIIDEVHMLSTGAFNALLKI 60 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPEHVKF+ ATT+ K+ TI+SRC +F LK + + IR +L+ I E I + A Sbjct: 61 LEEPPEHVKFVFATTEAHKVLPTIVSRCQRFDLKPIPEDLIRERLDLICKTEGIEADEAA 120 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ +AR A+G +RD+ S+ DQ IA +++ V + G + + L A+ + Sbjct: 121 LKAVARLADGGMRDSQSILDQMIAFCGTKITEPDVLQVYGLVSGEHIDELARAIATGDHP 180 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 ++ L ++ A G ++ LV++ + + + + + + Sbjct: 181 HLLELSDQFDASGQDFYRALVDLQSRVRQALLEAVRGGGKTKSLGEE----------LST 230 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTA 382 + +L L + ++ E+ LL+A + + A P Sbjct: 231 ESLTRLLDSLRQSESGLKFGLSEKVNFEVALLKASEECRARAIDGLIRELSTIAENLPET 290 Query: 383 VMTP 386 Sbjct: 291 ADEK 294 >UniRef50_Q3F084 DNA polymerase III subunit gamma/tau n=3 Tax=Bacillus thuringiensis RepID=Q3F084_BACTI Length = 431 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 12/335 (3%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 R++RP++ + G E + A+ + L+ A L GT G GKTS+AR++AK CE Sbjct: 15 TRRYRPKSMDEYKGNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYLCED 74 Query: 67 -GITATPCGVCDNCREIEQ-------GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 CG C +C+ ++ + L EI+A+ + + LL+ QY G Sbjct: 75 RDEEKGACGECYSCKMMDDYIETGNTDGLMGLREINASKDSGLTAINSLLEEAQYPNPDG 134 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ-FHLKA 177 +K+Y++DE H +S + N+LLK +EEPPE+V F+ TTDP K+ T+L+RC +K Sbjct: 135 SWKIYILDECHRISIPAQNSLLKLVEEPPENVLFMFCTTDPDKMLDTLLNRCNIKLDVKK 194 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 EQ+ L I +E I+++ + L L+ +E +R AL + I + + V Sbjct: 195 PSEEQLTQILLDICVKEGISYDRKGLSLIVDRSELVIRQALMDLENVIVQTESA-EHRFV 253 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 S + + A+++ + + +++I++ + + + + R + Sbjct: 254 SKIFDKHPNSLYFDFYRALLKHDTHQFVSIIHKV-KTKMTVQEFVKNLTNFTKR-GIYIW 311 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + L M+EL + ++ + + L Sbjct: 312 NGVNLEGITENELKNMKELFKQFKLEELAMMIEFL 346 >UniRef50_A2DS36 ATPase, AAA family protein n=1 Tax=Trichomonas vaginalis RepID=A2DS36_TRIVA Length = 325 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 130/346 (37%), Gaps = 32/346 (9%) Query: 1 MSYQ---VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ Q K+RP DVV E ++ + + + H F G G GKT+ A Sbjct: 1 MTAQNVLPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPH-LCFHGPPGTGKTTTAIA 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPA 116 ++ L + ++E++A+ ++ R + D Sbjct: 60 ISHQLYGND-------------------TSMSVLELNASDERGIDTVRMRIKDFASSRSL 100 Query: 117 RGRF-KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G K+ ++DE ++ + AL + +E+ +V+F+L P+KL + SRC +F Sbjct: 101 FGPKIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRF 160 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L E L HI + E + + L+ L + G LR +++L S ++ Sbjct: 161 QPLPDEDAAKFLRHIADAEKLNMDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEA 220 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALI-NEAAARGIEWEALLVEMLGLLHRIAM 294 V G + +E ++ + + + ++ G+ ++ E+ + + Sbjct: 221 NVYRCSGYPLPEDMARTLEQLINKPLDEALNTLNDQVFNNGLSLLDVIRELHSQV----V 276 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 + P + ++ ++ P +Q + + L Sbjct: 277 LMEFPPLVLANLIERLAQIERCLAEGSPERVQSA--AIAAAFQMLR 320 >UniRef50_P35249 Replication factor C subunit 4 n=17 Tax=Eumetazoa RepID=RFC4_HUMAN Length = 363 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 132/349 (37%), Gaps = 34/349 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +++ Sbjct: 199 FKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEIT 258 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + ++ + G + ++ + A + +++ A++ + G +++ LH + Sbjct: 259 EKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG----HAATQLVNQLHDVV 314 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + + + + + +Q ++L Sbjct: 315 VENNLSDKQKSIITEKLAEVDKCLADGADEHLQ-LISLCATVMQQLSQN 362 >UniRef50_C7G973 DNA polymerase III delta subunit n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G973_9FIRM Length = 349 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 43/360 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC---------- 64 F D+VG E ++ L N +++ ++ HAY+ +G GK IA A+ L C Sbjct: 4 FKDIVGHEQIIEHLQNAITMDKVSHAYILNGPDKSGKMMIAEAFAQTLQCEAVNKKLEEL 63 Query: 65 ---------ETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTR-DLLDNVQ 112 E TA PC C +C++ D+I + V+D R L +++ Sbjct: 64 AGETESERIENKFTAEPCMECHSCKQAAGKNQPDIIYVSHEKPNTISVDDIRTQLNNDIV 123 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 P + K+Y++DE +++ + NALLKT+EEPP + LL TT+ + TILSRC+ Sbjct: 124 IKPYSSKHKIYIVDEAEKMNQQAQNALLKTIEEPPAYAVILLLTTNAESFLPTILSRCVT 183 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 +LKA+ E+I+ L H + A+G++ A+ L Sbjct: 184 LNLKAVPDEKIKKFLMA-----HYQIPDYQADVCVAFAQGNVGKAIQLA----------- 227 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 ++ + + AL L++ + + + + + + + ++ M+ + Sbjct: 228 ASDDFNEL-----KASALQLIKRLHDIDLYEMTEAVKQISEYKLQINDYFDLMMIWYRDV 282 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + G ++ A I+ Q L + L + + +E+ Sbjct: 283 LYYKATKDVNGLIFKDEVYDIKRQAEQSSYNGIEEILQALSKAQVRLNANVNFDLVIELL 342 >UniRef50_B0EMU2 Replication factor C subunit, putative n=3 Tax=Entamoeba RepID=B0EMU2_ENTDI Length = 539 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 121/288 (42%), Gaps = 24/288 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP T + G E++L +L ++ +I H LF G G GKT+ A + K Sbjct: 1 MS-LPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPH-MLFYGPPGTGKTTTALAIVK 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--G 118 L CG + +E ++A+ ++ RD + + Sbjct: 59 QL----------CGTKFSALVLE---------LNASDERGIDVVRDQIKSFASTRTLYTN 99 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K ++DE L++ + NAL +TLE+ + +F+ + + I SRC + L Sbjct: 100 CTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPL 159 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + +E+I +E + + A + + ++G R ++ QA++ Q++ + Sbjct: 160 SPNALTKIVENITTKEGMEIDDDAKKSIIEISKGDARSIINTL-QALSMTCKQITNSTLY 218 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 M+G Q ++ ++ + +++ G+ +++ ++ Sbjct: 219 TMVGLPTPAQIDDIISELLSSPYFESFTVVDNLIKAGLSLNDIIIRVV 266 >UniRef50_A8W216 Dihydropteroate synthase n=2 Tax=Bacillus RepID=A8W216_9BACI Length = 330 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 135/339 (39%), Gaps = 22/339 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L + R+ HAYLF G+RG GK IA+L+AK C+ +A PCG C +CR Sbjct: 12 QPVAAGILKRTIEKNRLAHAYLFEGSRGTGKQEIAKLVAKAFLCQVRESADPCGDCGDCR 71 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++ G D+ I+ KVE R L KVYL+ + +++ + N+L Sbjct: 72 RVDSGNHPDVHLIEPDGTTIKVEQIRGLKKEFSMRGMESGRKVYLVQDADLMTASAGNSL 131 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L TT PQ++ TILSR L ++ L + +E Sbjct: 132 LKFLEEPDGEALAILMTTRPQRILKTILSRVQVLSFHPLAPDEFVKTLVNHDVKE----- 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL L +L +ALS+T++ + Q + ++ ++ + Sbjct: 187 RDAL--LLSRMTSNLDEALSMTEEDWIAEARNKVIQLIDDLVTRPGYSLI-----SLQDD 239 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + + + M + + E R+++ A + Sbjct: 240 WIP--------FFKEKTDVQLGIDLMTLWYRDVLRTK-VDQMEQIVYVDQEDRLQKQAFS 290 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + + + ++ ++ + ++ +E L+R Sbjct: 291 LSEERLARHLEAIVDTKRRIDANTTPQLAMEQMLIRLQE 329 >UniRef50_C9KNC0 DNA polymerase III, delta prime subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNC0_9FIRM Length = 334 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 139/346 (40%), Gaps = 32/346 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 + + G E AL L GR+ HA LF+G G+GK + R+LA + C+ PC Sbjct: 4 RWDTISGHEKQKEALRTMLREGRLPHALLFTGPDGIGKRMVGRVLAAAILCDAED--GPC 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 G C++CR ++ G D +E+ ++E R + V P + + LID+ Sbjct: 62 GHCESCRAMQLGSHPDYLEVVPEQNGKSAAQIRIEAIRSMQTQVSRYPVLAKRRTVLIDD 121 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V F+L T+ L TILSRC+ L +++R L Sbjct: 122 ADRMNEAAQNSLLKTLEEPEGPVTFILVTSARSALLDTILSRCMPVAFGMLSPQEMRSVL 181 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 LA ++GSL AL L + G D Sbjct: 182 ------LQHDVPEAEAAELAALSDGSLGRALLLHEHE-----------------GLHLRD 218 Query: 248 QALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 +AL + + + ERV +L + A + + LL + ++ + Sbjct: 219 EALDFLAQLPSFDMERVWSLAADMGARDRESLREYFLYLNMLLRDLLVLAEDGGSPLLYH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 I ++ L T P + + ++ L + R+ +E Sbjct: 279 GDIRAKLLALLPTYPEGRVFALLAEVREVQRRLQANVNLRLLMEGF 324 >UniRef50_C5LA68 Replication factor C subunit, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LA68_9ALVE Length = 514 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 73/497 (14%), Positives = 156/497 (31%), Gaps = 48/497 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP + +DVVG E + L + + L SG G GKT+ LA+ L Sbjct: 15 LPWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPN-LLLSGPPGCGKTTSVMCLARALL 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARG 118 E + ++E++A+ ++ R+ + + Sbjct: 74 GEDLVKTA------------------VLELNASDDRGIDVVRNRIKTFAQQKISLPAGGC 115 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + K+ ++DE ++ + A+ +T+E +F LA K+ I SRC L Sbjct: 116 QQKIVILDEADSMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRL 175 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I Q++ + + E + L+ L AEG +R AL+ Q+ A+G G V+ + V Sbjct: 176 KDSDIEAQVKKVADMEGVQLRGDGLEALIFTAEGDMRAALNNL-QSTATGFGVVTRENVF 234 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + + V + +++ A+G ++ + ++ + Sbjct: 235 KVCDQPQPGELKQATLDCVNNDWCSAFDRLDKITAQGYSIGDIVGTLERVIRNL------ 288 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + Q + + R + R+ + + + + Sbjct: 289 -------PPEELNEAIK----------IEFLQAIAMCRLRMSEGLQSRVQLSVYVYMPVL 331 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 PL + E P + A + + + + Sbjct: 332 NALDTPLEKSEEPLEREVIDAELQRLLEAKPAQMSYDEYLKWYVAVKNIQRFYRSPVIEP 391 Query: 419 LQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRW 478 L ++G T+ + + + L+ T A + + Sbjct: 392 LMFIEGFTEEDLEKAVGGSTRQQGVTRELDNKKLPTTSTSWSSSAMATTSGWSSSTVPKQ 451 Query: 479 KATTPVMQQKEVVATPK 495 + V + Sbjct: 452 NPPSTAWSSSTAVTSTW 468 >UniRef50_A8Y3K6 Serine/threonine-protein phosphatase n=7 Tax=Eukaryota RepID=A8Y3K6_CAEBR Length = 551 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 124/314 (39%), Gaps = 36/314 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E V+ L + + H LF G G GKT+ A+ Sbjct: 224 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAARK 282 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG-- 118 + + + ++E++A+ ++ R+ +++ Q + Sbjct: 283 MYHPSKM------------------SSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFA 324 Query: 119 --------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 FK+ ++DE +++ + NAL + +E+ ++V+F + + I SRC Sbjct: 325 SASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRC 384 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 +F LD I +L+ I+ E + P + L R ++G +R ++ Q+ A Sbjct: 385 TRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTL-QSTAMSFE 443 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLL 289 VS V +G + +V ++ + M I + G L +++ L Sbjct: 444 VVSESTVYQCIGQPTPAEMKKVVTLLLNQTAKTCMNKIKKSLFENGY----ALQDVITHL 499 Query: 290 HRIAMVQLSPAALG 303 H +A P + Sbjct: 500 HDLAFSMDIPDSAM 513 >UniRef50_P35250 Replication factor C subunit 2 n=136 Tax=Eukaryota RepID=RFC2_HUMAN Length = 354 Score = 197 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 131/338 (38%), Gaps = 29/338 (8%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP ++VG E ++ L G + + + +G G GKT+ LA+ L Sbjct: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN-IIIAGPPGTGKTTSILCLARALL 94 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RGRF 120 A ++E++A++ ++ R+ + +GR Sbjct: 95 GPALKDA-------------------MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRH 135 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE ++ + AL +T+E + +F LA K+ I SRC L Sbjct: 136 KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTD 195 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 QI +L +++ +E + + L+ + A+G +R AL+ Q+ SG G ++++ V + Sbjct: 196 AQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL-QSTFSGFGFINSENVFKV 254 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 +++ V AN + ++ G E ++ + + M + Sbjct: 255 CDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKL 314 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 ++ +++ E + L ++ Sbjct: 315 EFIKEIGYTHMKIAE-----GVNSLLQMAGLLARLCQK 347 >UniRef50_O14003 Replication factor C subunit 3 n=17 Tax=Dikarya RepID=RFC3_SCHPO Length = 342 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 61/354 (17%), Positives = 127/354 (35%), Gaps = 48/354 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP DVV + +++ L +S R+ H LF G G GKTS A+ Sbjct: 21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTSTILACARK 79 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGR 119 + L+E++A+ ++ R+ + N Sbjct: 80 IYGPNYRNQ-------------------LMELNASDDRGIDAVREQIKNFASTRQIFAST 120 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 FK+ ++DE ++ + NAL + +E+ ++V+F + K+ I SRC +F + L Sbjct: 121 FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 ++I ++H++ EH +P A + R ++G +R AL++ QA + + A+ Sbjct: 181 PKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNIL-QACHAAYDHIDVSAIYN 239 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +G +++++ I+ + L I Sbjct: 240 CVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKG----------LALQDILTCIFEA 289 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ + L + + ++ + + Sbjct: 290 LDELEIKPNAKIFI---------------LDQLATIEHRMSFGCSEKIQLSAMI 328 >UniRef50_B0ACX9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ACX9_9CLOT Length = 311 Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 130/342 (38%), Gaps = 40/342 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F + GQ L+N + I HAY+F G GVGK ++AR LA L + Sbjct: 1 MYFEKIRGQRFAKKYLSNSIKSNMISHAYMFEGPSGVGKNTMARDLATTLLEMENLF--- 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D IEI K+ R L ++ P + +K+Y+IDE + Sbjct: 58 -------------NSPDYIEITPDGNSIKIAQIRKLQSDILVKPYKS-YKIYVIDEAQKM 103 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEPP++ +L T + + L TI SRC + + ++ L Sbjct: 104 TVEAQNALLKTLEEPPKYAIIILITNNKESLLDTIKSRCEIIKFTPIPLVEVADYLTQT- 162 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + LLA + GS++ A+ L++ + V Sbjct: 163 -----GVDKNRASLLANFSRGSMQKAIELSESEDF----HIMRDEVQ------------K 201 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 VE + + +M + + +L ++ I MV+ + + + Sbjct: 202 YVETFLTGSMLDIMDIQSSIEKYKDNITNVLDLLVNYFRDIMMVKENVDSSMIINLDRLV 261 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ ++ I + + + + +L + + +++ Sbjct: 262 FIKNMSTKITYSQLSKIIDIIEETKNKLRSNCNFNISIQVMT 303 >UniRef50_A4XHH7 DNA polymerase III, delta prime subunit n=2 Tax=Clostridia RepID=A4XHH7_CALS8 Length = 320 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 33/344 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 VGQ+ ++ AL L HAY+F G +G GK +AR+ +K + CE + Sbjct: 1 MNLDTFVGQKEIVFALKKALKN--PFHAYIFEGEKGFGKKLLARVFSKHILCENK---SS 55 Query: 73 CGVCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CGVC +CR E D I + VE R+++ ++ P KV++I+E Sbjct: 56 CGVCKSCRLFEASSHPDFHIIKRQEDKKEISVESIREIIKDLSRGPIFSDKKVFIIEEGE 115 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 LS + NALLKTLEEPP + F++ + ++L T+LSR + K +I L Sbjct: 116 ELSISAQNALLKTLEEPPTYALFIITCNNIERLLPTVLSRSIVLSFKRYSASEIAKIL-- 173 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E EP+ + + +G+ + AL ++ + + + + + D + Sbjct: 174 ----EQNGLEPK--DYIVKLCKGNPKIALDFYNKEVQNKRDYIFDKLLCY------DGAS 221 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L++ + ++E L ++ L + + + Sbjct: 222 FDLIKEFES-----------DFEKLKNDFEFLFKNIIYFLRDALFYKKTKSIELITNTDK 270 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ E + + I Q +I K ++M Sbjct: 271 LEKIIEFSNKHTISHIYKLLQDFMILEKYPDANVISDNVLDMIF 314 >UniRef50_Q245Y3 ATPase, AAA family protein n=2 Tax=Oligohymenophorea RepID=Q245Y3_TETTH Length = 373 Score = 195 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 117/295 (39%), Gaps = 28/295 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP +V QE V+ +L L G + H + G G GKTS AK L Sbjct: 42 LPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPH-LILHGPPGTGKTSSILAFAKQLY 100 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR---- 119 T ++E++A+ ++ RD + Sbjct: 101 GPTFYKER------------------ILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKS 142 Query: 120 -----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + +AL + +E+ +F + K+ + SRC++F Sbjct: 143 FKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFR 202 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K + +E +LE I E I +E AL+ L + + G LR +++L A + + Sbjct: 203 FKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKV 262 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + + + G L + ++ + +++ + + +G + LL + + Sbjct: 263 EVIEEISGVNYLLCINKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYI 317 >UniRef50_C9XSF1 Putative DNA polymerase III, delta' subunit n=5 Tax=Clostridium RepID=C9XSF1_CLODC Length = 311 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 137/341 (40%), Gaps = 40/341 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F +++GQ+ L N + ++++AY+F G G+GK A L+K L Sbjct: 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYE------ 54 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D + I K+ R+L ++ P + +K+Y+I+ + Sbjct: 55 ----------NLENSPDYVLIKPDGNSIKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKM 103 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEPP + +L T + + L TI SRC + +E ++ L Sbjct: 104 TVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLI--- 160 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + E QLLA + GS+ +AL+L+ + ++ + Sbjct: 161 ---NTGIEEERAQLLAIFSRGSIENALNLSQSSEF----------------SMMREDIQQ 201 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ M++ N ++ + N + ALL M+ I +++ + + Sbjct: 202 YIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDKLV 261 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 ++ ++ I + + + + ++ + + +++ Sbjct: 262 FIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVM 302 >UniRef50_B3L1L0 Replication factor c subunit, putative n=11 Tax=Apicomplexa RepID=B3L1L0_PLAKH Length = 339 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 128/337 (37%), Gaps = 26/337 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ DVVG V+ L + + G + + L +G G GKT+ LA + Sbjct: 18 WIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPN-LLLAGAPGTGKTTSILCLASEMLGP 76 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFKV 122 A ++E++A+ + RD + + G+ K+ Sbjct: 77 QAKKA-------------------VLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKI 117 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DEV ++ + +L + +E + +F LA +K+ + SRC L +Q Sbjct: 118 IILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQ 177 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + ++ I E+I + L+ L A+G LR A++ Q+ +G ++ + V + Sbjct: 178 VLKRIVKICEMENIKYTDDGLETLTFIADGDLRKAVNCL-QSTYAGLEVINKENVLHICD 236 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI-AMVQLSPAA 301 ++ +L++ + + ++ + + G + + +L R + Sbjct: 237 IPSPERIENLLKFCINSEWKKAHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIE 296 Query: 302 LGNDMAAIELRMRE-LARTIPPTDIQLYYQTLLIGRK 337 A M LA I + + + Sbjct: 297 FLKIGAMACNTMASGLASVIQLDRLLADWCIAAKALR 333 >UniRef50_Q5CVS5 Replication factor C like AAA ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CVS5_CRYPV Length = 335 Score = 194 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 123/303 (40%), Gaps = 33/303 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + K+RP D+ + V++ L++ L G + H LF G G GKTS L++ Sbjct: 4 MSSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPH-LLFHGPPGTGKTSAVLALSR 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR- 119 L ++E++A+ + RD + + + Sbjct: 63 ELFGPNEYKNR------------------ILELNASDERGISVVRDKIKSWTRQVVQCNK 104 Query: 120 -----------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +K+ ++DE M++ + +AL + +E ++ +F++ K+ + S Sbjct: 105 THEITGNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLAS 164 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IA 226 RC +F + + +L++I ++E +++E L+ + ++G LR +++ A + Sbjct: 165 RCAKFRFQPISANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELF 224 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 D ++S ++ + G ++ + E ++ + G E + + Sbjct: 225 GKDKRISMSSILDVSGVPPIKIIERIINSCKILGVESILIETAKLINEGWSVELIFKGLA 284 Query: 287 GLL 289 + Sbjct: 285 EFI 287 >UniRef50_P34429 Probable replication factor C subunit 5 n=1 Tax=Caenorhabditis elegans RepID=RFC5_CAEEL Length = 368 Score = 194 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 132/324 (40%), Gaps = 32/324 (9%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S K+RP ++V E ++ L + + H LF G G GKT+ A+ Sbjct: 27 SNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPH-LLFYGPPGTGKTTTVLAAARQ 85 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG-- 118 + T + + ++E++A+ ++ R+ +++ Q + Sbjct: 86 MYSPTKMAS------------------MVLELNASDERGIDVVRNTIVNFAQTKGLQAFS 127 Query: 119 --------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 FK+ ++DE +++ + NAL + +E+ ++V+F + + I SRC Sbjct: 128 TSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRC 187 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 +F LD + I +LE+I+ E + P L ++G +R ++ Q+ A Sbjct: 188 TRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTL-QSTAMSFD 246 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN-EAAARGIEWEALLVEMLGLL 289 VS V +G + +V+ ++ ++ M I + G + ++ + + Sbjct: 247 TVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFV 306 Query: 290 HRIAMVQLSPAALGNDMAAIELRM 313 + + + +A+ + +E + Sbjct: 307 FTLDIPDEAMSAIITGLGEVEENL 330 >UniRef50_Q977Z9 Replication factor C small subunit n=4 Tax=Thermoplasmatales RepID=RFCS_THEVO Length = 318 Score = 194 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 138/333 (41%), Gaps = 26/333 (7%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++ K+RP++ +++ G++ + L + + + H LF+G+ G GKTS A LA L Sbjct: 3 EIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPH-LLFAGSVGTGKTSTAIALAIELF 61 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG-RFK 121 E+ + IE++A++ ++ R+ + D + P+ FK Sbjct: 62 GESWKE-------------------NFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFK 102 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE L+ + AL +T+E E +F+ A K+ I SR + + + E Sbjct: 103 ILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDE 162 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 I+ +L I E + +++ + + G +R A+++ G++S + + ++ Sbjct: 163 FIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQ--AVYTSGEISPKKIYEII 220 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 G + L+ + + ++++ G+ ++ + ++ + Sbjct: 221 GYASPESVNKLISRAINGLFDEARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKI 280 Query: 301 ALGNDMAAIELRMRELA-RTIPPTDIQLYYQTL 332 + +A E R+ E + I + + Sbjct: 281 EIIKALADAEFRIVEGSNDRIQLDALIARIADI 313 >UniRef50_D1CBV2 DNA polymerase III, delta prime subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBV2_THET1 Length = 345 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 25/348 (7%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ VG + L L+ + R ++LF+G VGK+++AR A L C + PCG Sbjct: 7 SEFVGNKQALRLLSAAKAKNRASGSWLFTGPPSVGKSTLARWFAALLLCSDETSDYPCGQ 66 Query: 76 CDNCREIEQGRFVDLIEID----------AASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 C +CR+I G D+ I + ++ R++++ + P KVYLI Sbjct: 67 CIHCRKIYHGSHPDVETISLALQAEQSGKPSREIGIDSIRNIIERIYLRPFEANRKVYLI 126 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ ++ + NA LKTLEEPP+ V +L D LP TI SRC + +L+ + +I Sbjct: 127 EDASTMTEEAANAFLKTLEEPPDFVTIVLIAIDDYSLPETIRSRCYRVNLQPVPHSEITR 186 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + E ++A + G A+ T + ++ +L + D Sbjct: 187 YLVN-----SLGFEQEEANMIATLSNGRPGWAIRATHDRALVAQVNDDWKYLNKILQSND 241 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++ + E + + + +LL +G++ +A ++ Sbjct: 242 IERL---------KSAEEISKDWSNKPNNRDDLYSLLFNWIGIIR-LATIKSFQENGSKA 291 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + ++ P Q +L L + R+ +E Sbjct: 292 YLSENVDLIRFLSSLGPQHGYELIQQILKAIYMLDSNANVRLVLENLF 339 >UniRef50_C0ET70 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ET70_9FIRM Length = 340 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 66/356 (18%), Positives = 133/356 (37%), Gaps = 33/356 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---AT 71 +++G E + + +I HAY+ G +G GK +A +K L CE T Sbjct: 4 LNEILGNERIKEHFITAVHHKKISHAYIMEGDKGSGKKMLAEAFSKILQCEGRETTGLVE 63 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEV 128 CG C++C ++E D+I + V + R+ +++ V+ P +G +K+Y++DE Sbjct: 64 SCGKCESCIQMEYHDHPDVIWVSHEKPNVISVGEIREQIVNTVEIMPYKGPYKIYIVDEA 123 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + NA+LKT+EEPPE+ L TT+ TILSRC+ + + + L Sbjct: 124 EKMNAAAQNAILKTIEEPPEYAVIFLLTTNRGAFLDTILSRCILLATRPVPGTAVEKYLV 183 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E + + A + G++ A ++ +++ Sbjct: 184 -----EKCSVSKEEAEFAAGFSLGNIGKAEAIISSEEFQDLKELTLS------------- 225 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ------LSPAAL 302 ++ + E + + E E L I +++ A Sbjct: 226 ---ILRYIHEIESYEIADKVKEYKKYKNRIEDFFDIFLMWFRDIMLLKADNSVNAEAAKK 282 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +++ + I + R + + +E+ ++ A Sbjct: 283 KIIFKNEYAYLKKQVDKLDLEAIDYVIGKIHRARVRIKSNVNFDATLELLIVEARR 338 >UniRef50_B3E2K6 DNA polymerase III, delta prime subunit n=2 Tax=Desulfuromonadales RepID=B3E2K6_GEOLS Length = 331 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 135/353 (38%), Gaps = 28/353 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT 71 + + + GQ+ VL AL ++ R+ HAYLF G G G+ + A L + L C+ Sbjct: 1 MSLSVIKGQDRVLDALKRSIAANRVAHAYLFEGPDGCGRRTTALALMQALFCKEPLDGGD 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C +CR++ G DL + +E R+L + P + K LI+ Sbjct: 61 ACGNCSSCRKLASGNHPDLHLLSPLPDKRDISIEQIRELQQQLSLRPFEAKRKACLIEPA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ S NALLKTLEEPP H +L +T L TI SRC LD + L Sbjct: 121 ERMNEKSANALLKTLEEPPGHAIIVLLSTQADLLLSTIRSRCQHLRFSPLDDGVVADLLI 180 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +P + LA AEGS+ A +L +++ A ++ V + + Sbjct: 181 QQ------GMDPDKARELAPLAEGSMERASTLEEESDAVRRQELL--TVLSKASSRQVAT 232 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 E++ E ++ N + + + S +G Sbjct: 233 IFDAAESVAGGR-EETLSTFNLLLSLLRDLLLI---------------RSCGQIGIANGF 276 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + A P + + L R+ + + ++ +E LL Sbjct: 277 LNNELTVEASRFTPAGMMEALERCLETRRAIQGNANPKLALERFLLAYDRLRK 329 >UniRef50_Q99J62 Replication factor C subunit 4 n=13 Tax=Metazoa RepID=RFC4_MOUSE Length = 364 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 132/351 (37%), Gaps = 37/351 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V Q+ V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +VS Sbjct: 199 FKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVS 258 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 ++ + G + + A + +++ A++ G +++ LH Sbjct: 259 EDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEG----HAATQLVNQLHDAI 314 Query: 294 MVQLSPAALGNDMAAIELRMRELARTI--PPTDIQLYYQTLLIGRKELPYA 342 + + + + I ++ E+ + + + ++L Sbjct: 315 IENENLSDKHKSI--ITEKLAEVDKCLADGADEHLQLMSLCATVMQQLTQN 363 >UniRef50_B2A325 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A325_NATTJ Length = 320 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 44/342 (12%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP 72 +F +GQE ++ L L+ G HAY+F G G GK S+AR+ A GL CE+ + P Sbjct: 14 SFDKFIGQEKIVKNLLRQLTSGNTGHAYMFVGPEGQGKGSLARIFAAGLLCESVDENSGP 73 Query: 73 CGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C ++++ DL+ I + K+E+ R + + Y P + K+YLI+ + Sbjct: 74 CGICYSCSKLKKSIHPDLVTIGSESKSIKIEEVRKVKQYINYRPTDSKKKIYLIESAENM 133 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +R N++LK LEEPPE+V FLL + +++ T++SRC L EQ+ L + Sbjct: 134 TREGANSILKMLEEPPEYVVFLLTVNELERMLPTVISRCQIHQFLPLTEEQLYKALSNRT 193 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 L+L + G + L++ + + V + L Sbjct: 194 -----HASQEQLELAVSLSGGMIGRGLAILQDESYYDMIKKAHSFVEKFEKLTLPE-LLD 247 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 E + + L + + + + Sbjct: 248 WAEKIDSMDNCE----------------EFLELLNIVFKQKLSENQTSD----------- 280 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + +L + +L +R + +E + Sbjct: 281 ---------SINKLARIMEIILETKGQLLTNVNRLLALEAMM 313 >UniRef50_B0UL15 DNA-directed DNA polymerase n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UL15_METS4 Length = 699 Score = 192 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 4/272 (1%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ F D+VGQ+ + + ++ L G G GKT+IAR+L LNC Sbjct: 10 WDEKYRPRVFGDLVGQDGAVAWCKERVRERQV-KTLLLHGPSGCGKTTIARVLGNALNCR 68 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + +PC CD CRE + E AS+ +ED R L+ + +R K++ + Sbjct: 69 APVDGSPCLSCDICREFKPKNDTYYREHLCASQGGLEDARMLVRASSASGSRKYRKIFAL 128 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE H ++ +F+ALL LEEP F+L TTD + +P +L+R L+ ++ + E Sbjct: 129 DEAHRMTGAAFDALLSRLEEPNSTTVFMLLTTDLEAIPEAVLTRSLRIEIRPISDEDALT 188 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L I E + E ALQLL GS R + ++ G ++ V L Sbjct: 189 YLNKICRHEGLEPEAAALQLLVETGRGSPRRLIRDLERVKDFGS--LTYDGVRRALDLDH 246 Query: 246 DDQALSLVE-AMVEANGERVMALINEAAARGI 276 D + ++ A+ E+ + L+ Sbjct: 247 ADVVPAYLKVALTGGPLEQQLRLLEGWVTAPE 278 >UniRef50_UPI00016C0463 DNA polymerase III, delta prime subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0463 Length = 323 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 69/338 (20%), Positives = 140/338 (41%), Gaps = 27/338 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 D++G + + + + +I H+Y+F G +GVGK S+A +AK L CE I CG C Sbjct: 2 DIIGHQKIKDYFKKVIKINKISHSYIFEGNKGVGKKSLAAEIAKILLCEDAIDEIACGKC 61 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ ++ D I+I+ ++ K+E ++ LL V P +G++K+++I E L Sbjct: 62 SACKMMDAKVHPDFIQIEKDTKITKIETIKEKLLKEVSIKPYKGKYKIFVIAEAETLRSV 121 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 NA+LKT+EEPP + L TT+ + L TI SRC+ L +++ + Sbjct: 122 GQNAILKTIEEPPTYALIFLVTTNIEMLLPTIRSRCIHISFSGLSETELKDYCKKYSINN 181 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + H + AEGS+ + + + +A+ + Sbjct: 182 KLIH--------LKFAEGSIGKL-----------KDNIYDEKFLDL-----RAEAMDYIL 217 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++ N + +++ +L + + + A + ++ Sbjct: 218 SICSCNVLSLYKVVSVLRENKEFVLKILEFWKLFFRDMLLYKR-IQATDLYFSDYINDIK 276 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 LA + ++I + + + ++ + + +E Sbjct: 277 RLAAIMQYSEISENIKNIDVASNDIQNNINAVLVIENL 314 >UniRef50_A5FRS4 DNA polymerase III, delta prime subunit n=5 Tax=Dehalococcoides RepID=A5FRS4_DEHSB Length = 343 Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 32/347 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++GQ+ V++ L+N LS ++ HAY+F G GVGK +A A+ LNC+ PC C Sbjct: 4 IIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQALNCQASPP--PCQECS 61 Query: 78 NCREIEQGRFVDLIEI------DAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 C I D+I + DA+ V+ D+ P G++KV++I Sbjct: 62 VCGRILSRNHPDIIHLELLSAEDASDGKAKAEIGVKQIEDIQHAASLPPFEGKYKVFIIH 121 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + LS S N LLKTLEE F+L T D L T++SRC L+ ++ + Sbjct: 122 QAEKLSLESSNRLLKTLEETGSQNIFILLTADKSLLLPTVISRCQILELRYVE----INL 177 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 + L ++ + + +LL+ + G + A+ + + + + + + +LG D+ Sbjct: 178 IREALLKQGL--DAEKAELLSHLSHGRVGWAMEVASSPEILEERKANIEKIIWILGQ-DE 234 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 ++ + N EA+L L + + +++ Sbjct: 235 EERFDYASDLS-----------NLFGQNRTAAEAILDMWLDVFRDMLLLKADANQNM-TN 282 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + + TDI++ +L L + R+ +E+ + Sbjct: 283 IDYKDILYMASDKLGLTDIRIAIDNILKTEDRLRANANPRLCLEVLM 329 >UniRef50_Q5UP47 Putative replication factor C small subunit L499 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS3_MIMIV Length = 344 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 122/321 (38%), Gaps = 31/321 (9%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 K+RPQ ++ ++ +L + + H LF G G GKTS + A+ + Sbjct: 16 QLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPH-LLFFGPSGSGKTSTIKCCAREI 74 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-------- 114 + ++E++A++ +E R + N + Sbjct: 75 YGKY-------------------INYMILELNASNERGIETVRTKIKNFVSSKSSIFLPM 115 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 R FK+ ++DE+ ++ + L +T+E+ +F L D K+ + + SRC F Sbjct: 116 GVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFR 175 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L+ + +L I E + +E A+ + + ++G +R A++ G ++T Sbjct: 176 FSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINT 235 Query: 235 QAVSAMLGTLDDD---QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + V + G + ++ ++ + + + +N+ E + +L L Sbjct: 236 EDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKN 295 Query: 292 IAMVQLSPAALGNDMAAIELR 312 I M + + + Sbjct: 296 IVMESKFTTSQKIFLIDNFAK 316 >UniRef50_B4AZI0 DNA polymerase III, subunits gamma and tau n=2 Tax=cellular organisms RepID=B4AZI0_9CHRO Length = 843 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 104/524 (19%), Positives = 191/524 (36%), Gaps = 21/524 (4%) Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + HMLS +FNALLKTLEEPP V F+LATTDPQ++ TI+SRC +F + + + Sbjct: 282 LTVHNCHMLSVAAFNALLKTLEEPPNRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLLD 341 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + + L++I N+E+I + +A+ L+A+ A G LRDA ++ G V+ + V ++G Sbjct: 342 MVNHLKYIANQENINIDDQAITLVAQIANGGLRDA-ESLLDQLSLLSGTVTPERVWELVG 400 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L L++A+ N + ++ L RG E +L + G + + + +P+ Sbjct: 401 AIPEIDLLDLIKAIRTQNPDTILDLCRGLMNRGKEPLTVLQNLAGFYLNLVIAKTAPSRA 460 Query: 303 GN--DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 A+ + E A+ +I Q L +L R+ +E+TLL L+ Sbjct: 461 DLVAVTASTWNALCEEAQQWRLEEILQGQQHLKDSEVQLKNTTQPRLWLEVTLLGLLSVG 520 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + Q P P S P PE + + Sbjct: 521 VTVAPSVEQKSVNGSNGNNGKGNYQEIQTPSIPPSRVTPPPPQTKPEVKPEPIQESPPPA 580 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 + + + L L + + Sbjct: 581 PPREEPFTPEHNLQPLEDLEEIWKMVLTYLKVPSTYALFSQQGHLSSFDGSVAIVRISSP 640 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIER-DPWAAQVSQLSLPKLVEQV 539 ++ + + A K+ + ++ ++ E+ + L K +E + Sbjct: 641 NLLILFKGKTAEIEDAFKEIYQKPIKVKIEVNTIDKSPEQPARFQTPPKPLESVKELEPL 700 Query: 540 ALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP 599 +++EE + A + + +DN +P Sbjct: 701 NPTSFQEEKPAVNTNGKHPPIEPSSTPEAAPQ-----------PPSVE---NDNTGGESP 746 Query: 600 L-EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRP 642 A E+ Q ++ L + FD EL + I P Sbjct: 747 AISNFSAASSEETQQVYSDKEIQKAVEQLIKAFDGELVD--IVP 788 Score = 162 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 68/130 (52%), Positives = 91/130 (70%), Gaps = 2/130 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MSY+ L K+RPQTF D+VGQ+ + L N ++ RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MSYEPLHHKYRPQTFKDLVGQDAISVTLINAINTNRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T TPCG CD C+ I +G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCLETDKPTPTPCGKCDVCKAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQC 120 Query: 119 RFKVYLIDEV 128 R+KVY+IDE Sbjct: 121 RYKVYVIDEC 130 >UniRef50_Q4FWE5 Replication factor C, subunit 3, putative n=7 Tax=Trypanosomatidae RepID=Q4FWE5_LEIMA Length = 364 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/364 (17%), Positives = 133/364 (36%), Gaps = 45/364 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 S+ K+RP T VV E +L+ L + + G + H L G G GKT+ + A Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPH-LLLYGPPGTGKTTTIKACAYY 73 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL-LDNVQYAPAR--- 117 L + + A +++E++A+ ++ R + + Sbjct: 74 LYGKARVRA------------------NVLEMNASDDRGIDVVRQQTREFASTSSIFSMM 115 Query: 118 --------------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 +FK+ ++DE +S + AL + +E+ +V+F + K+ Sbjct: 116 GTGSSTGGGSGGPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKII 175 Query: 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 + SRC +F + + +L ++ +E + + L R + G LR L+ Q Sbjct: 176 PALQSRCTRFRFAPVKKSSMMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTM-Q 234 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AAARGIEWEALL 282 A A +++ ++V + G ++V M+ ++ E +GI + Sbjct: 235 ASALSANEITEESVYRVTGNPTPADVTAIVSDMLSSDFATSWVKAEESVVQKGIS----M 290 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 ++ +H + M P + + A LL + + A Sbjct: 291 ADLTREIHPVMMAMDLPQDCKCFLLMKLSDLEYYAAGGARE--SAVLGGLLGAFQLVKEA 348 Query: 343 PDRR 346 +R Sbjct: 349 VTQR 352 >UniRef50_Q8EU50 DNA polymerase III delta subunit n=1 Tax=Oceanobacillus iheyensis RepID=Q8EU50_OCEIH Length = 329 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 137/347 (39%), Gaps = 22/347 (6%) Query: 14 TFADVV-GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++ Q + N ++ GR+ HAYL G RG GK IA LLAK L C A P Sbjct: 3 TWEEITDLQPIASRTIINSINKGRVSHAYLLQGERGTGKRDIALLLAKYLFCLHREGANP 62 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C+NC+ I+ G DL I+ K+E R+L Y+ KVY+I + L Sbjct: 63 CHTCNNCKRIDSGNHPDLHWIEPDGQSIKIEQVRNLQKEFTYSGMESNQKVYVIQDADTL 122 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + ++ N LLK LEEP + ++ T + + TI SRC L+ L + + +L+ Sbjct: 123 TVNAANRLLKFLEEPSKQTTAIMLTENGHSILSTIRSRCQIIELQPLPPDVMNQRLQD-- 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + H L A + ++ALSL +G ++ Q + + +D Sbjct: 181 --EGVHHLE---ANLLSALTNNTKEALSLHQDEWFAGARKIVVQLIEMYVQKPEDVYLF- 234 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + E + L +L I + + + Sbjct: 235 ----IHQQWIPH--------FKERTEQQMGLDLLLLGFQDILHQHIKEDTTTVLLPKEDA 282 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +M + + Q +L +++L + +E L+ Sbjct: 283 KMERAMMSFSKEQLLFILQLILTAKRKLKQNVQPTLVMEQLALQIQR 329 >UniRef50_B0TB70 DNA polymerase iii delta prime subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TB70_HELMI Length = 340 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 138/360 (38%), Gaps = 27/360 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + GQE + L+ GL R+ HAYLFSG +GVGK + AR A+ + C C C Sbjct: 7 QITGQERAIRQLSRGLLANRVAHAYLFSGPQGVGKKTAARAFAQSVLCLERAGGDACASC 66 Query: 77 DNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 CR+ + G DL + T K+E R+L ++Y P +V LI++ + S Sbjct: 67 PACRQFQGGSHPDLFSLSPEGTTLKIEQIRNLQKRIRYRPYLSSHQVVLIEQAETMQGPS 126 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLK LEEPP F+L T + TI SRCL + + + +I L+ Sbjct: 127 ANALLKILEEPPGPTVFILITDRGHGILPTIRSRCLPVYFQPVPSGEIARFLKE------ 180 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + LL A+G A L + + +G + + V L D + L E Sbjct: 181 KGVSAGHVSLLTLLADGRWDRAARLAAEGLPAGRER--ARQVLDGLALTGDSRIFQLAEE 238 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + E + + + + A + + Sbjct: 239 -WDKDKEGIAEFFDYLTLLLRDRLLI-------------AGAGGAEVPVINGD----ITG 280 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSF 375 A P + T++ R+ L R+ VE TLL+ PL + + Sbjct: 281 GADRWPLPVLLTALDTVMAARRLLDTNASARLLVEDTLLKLRDLARGEPLTPLTAAKVNL 340 >UniRef50_A8BRC3 Replication factor C, subunit 4 n=2 Tax=Giardia intestinalis RepID=A8BRC3_GIALA Length = 322 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 110/291 (37%), Gaps = 23/291 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M ++RP+T ++G +L L + G + + LF+G G+GKT+IA LA Sbjct: 1 MKALPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPN-ILFAGGPGLGKTTIALCLAN 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR--- 117 + R V +E++A+ V D R + Sbjct: 60 QMLG-------------------AHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPA 100 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G K+ +DE ++ + L + +++ +F LA + K+ + SRC + Sbjct: 101 GIQKLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMP 160 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ L+ I +E + + AL+ L + +R L+ + + ++ V Sbjct: 161 ATQAELIKYLQEICEKEGVKSDTEALKELISISGNDVRSCLNSLQLVADANNKVITVAGV 220 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L T+D +++ + + LI+ G ++ + M Sbjct: 221 QKALSTIDVKVIDQVMKLLTSGKFDDGWMLIDNQLNEGYNYDDIYNAMFRY 271 >UniRef50_A2PXY3 DNA polymerase III, subunits gamma and tau n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PXY3_VIBCH Length = 479 Score = 189 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 165/482 (34%), Positives = 238/482 (49%), Gaps = 55/482 (11%) Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA 273 +RDALSLTDQAIA G+G V + V+ MLGTLD D AL L++A+ + VM I A Sbjct: 1 MRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHALHLLQAISLQTPQAVMDCIETLAQ 60 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G+EW+ LL ++ LHRIAM Q PA L + R+ LA+T+ P D+QLYYQ L Sbjct: 61 NGVEWDGLLQQLSTQLHRIAMYQALPATLDKSLP-EASRIESLAKTLAPQDVQLYYQIAL 119 Query: 334 IGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQ---VP 390 GR++LP +P R+G+EM +LR +AF P + + A PT +Q Sbjct: 120 KGRQDLPLSPTARIGIEMLMLRMMAFRPSHVSLASVIVPPNTAVTTPTIATPTSQMAVSA 179 Query: 391 PQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPV-------- 442 PQPQ Q + P + +A + + ++ A+ Sbjct: 180 PQPQPVAQSNVSQPASQAMPYSVAPPMMAAQPVVESAVPVTQREASHSINAPEVSVVTNT 239 Query: 443 -----------------------------------------NNAALERLASVTDRVQARP 461 +ALER+A +VQ P Sbjct: 240 DTQSQASMPALAGLRHQLRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSP 299 Query: 462 VPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERD 521 + ++ ++E Y+W+ P+ + TP LKKALEHEKTPE+ AKL EA+ +D Sbjct: 300 ERNDEDELEPEEEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMVAKLIEEAVAQD 359 Query: 522 PWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG 581 W+A V +L K+VEQ+ALN+ + + L LR S HL+N AQQ+L +AL+ + G Sbjct: 360 AWSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLG 419 Query: 582 STVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIR 641 L I TPLE R+ +Y++KL A S+ D N+Q + R F+A+LD +S+R Sbjct: 420 EACSLNITVGQEG--ETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVR 477 Query: 642 PI 643 PI Sbjct: 478 PI 479 >UniRef50_A2E057 ATPase, AAA family protein n=2 Tax=Trichomonas vaginalis RepID=A2E057_TRIVA Length = 325 Score = 189 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 128/299 (42%), Gaps = 30/299 (10%) Query: 1 MS----YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 MS K+RP+ D+V QE + AL L G + H +F G G GKTS+A Sbjct: 1 MSKPADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPH-LIFHGPPGTGKTSLAL 59 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAP 115 L + L E + + E++A+ ++ R + + A Sbjct: 60 ALCRSLFGEDFR-------------------LRVKELNASDERGIDAVRSSVKEFASLAV 100 Query: 116 ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 G+ FK+ ++DE ++ + NAL + +E +F++ K+ ILSRC +F Sbjct: 101 PNGKIPFKIVILDEADSMTSAAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKF 160 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQAIAS--GDG 230 K LD I +L I ++++++ + + L + G LR A++ A ++ Sbjct: 161 RFKPLDRPAIIQRLHKIFDDQNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETR 220 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 +++++ ++++ G + + + A+ + + + G + + ++ L+ Sbjct: 221 KITSEIITSISGAANPSDVENYFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLI 279 >UniRef50_Q8SQM0 Replication factor C subunit 4 n=2 Tax=Apansporoblastina RepID=RFC4_ENCCU Length = 309 Score = 189 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 126/313 (40%), Gaps = 27/313 (8%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L K++P D+VG E + ++ + + H LF+G G GKT+ A++LA+ L Sbjct: 4 LVNKYQPSEIQDIVGNEATMELVSLMIESRDMPH-LLFTGPPGTGKTTCAKILARRLL-- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYL 124 G L+E++A+ ++ R + Q FK+ + Sbjct: 61 -------------------GNKEGLLELNASDERGIDTVRTTIKSFAQRRVKDCEFKIII 101 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE ++ + A+ + +E +F+L K+ I SRC ++ I Sbjct: 102 LDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVIL 161 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 +L+ I E I AL L+ ++G +R +L++ QA + G V + ++G Sbjct: 162 KRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNIL-QACINSPGTVDQDYIIKIIGLP 220 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI---AMVQLSPAA 301 + +++ +++ E + + +E + L+ + ++++ A Sbjct: 221 SPKRIEKVLQRLLKREVEEALEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKVIGLA 280 Query: 302 LGNDMAAIELRMR 314 + R++ Sbjct: 281 NLRISEGVNSRLQ 293 >UniRef50_Q6AQ60 Related to DNA polymerase III, delta subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ60_DESPS Length = 338 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 132/347 (38%), Gaps = 24/347 (6%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 + V+GQ+ +A + R+ HAYLF G GVGK AR +A LNC A CG Sbjct: 12 SQVLGQQRAKQIVARAIEADRVPHAYLFKGPDGVGKKLFARGVAAALNCRERQGAFACGH 71 Query: 76 CDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C +CR++ G D + K++ R L ++ + P +V ++++VH + R Sbjct: 72 CVSCRKLLSGNHPDYTVVQPDKGAIKIDQVRSLCRDLSFPPYESPVRVVVLEDVHTMRRE 131 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + N+LLKTLEEPP++ +L ++ TI SRC L ++ L+ +E Sbjct: 132 AANSLLKTLEEPPQNNVLILTAESSCEILTTISSRCQVVSFYPLTENEVSTALQ---GKE 188 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 LLAR AEGS L L+ A+ + + ++ Sbjct: 189 LPPLAENEQGLLARLAEGSPGKMLLLSTTAVLPVWKK-----AQKL-----------FID 232 Query: 255 AMVEANGE--RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 ++ + E + E A + + ++ + + Sbjct: 233 PALQGDAEIGAWLQCAEEIALLKEDMTYFFAILRLMIRDHLLNLSGVQESLCSLTDWGFS 292 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 +L + + K++ Y + + E+ L Sbjct: 293 ENKL--RWSRPALLQALHYIDTAEKKMVYNCNNTLVCEVLLFALQRL 337 >UniRef50_Q97M98 DNA-polymerase III, gamma subunit n=1 Tax=Clostridium acetobutylicum RepID=Q97M98_CLOAB Length = 314 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 124/342 (36%), Gaps = 34/342 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ G E V + R HA + G G+GK+ +A+ +A L +T I Sbjct: 1 MKFENIFGHEAVRKQFDELVKNKRFPHAIMLCGEDGIGKSIVAKEIAAKLLNKTEIKEYA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 ++ ++ V+ R +++ V P G K+ ++ ++ ++ Sbjct: 61 DL-------------IEWKILNDKKSISVDQVRKIIEEVNKKPYEGNNKLIVVHDMDYMT 107 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 NA LKT+EEPP V +L ++ T+ SRC + L LD ++R I Sbjct: 108 IQGQNAFLKTIEEPPLGVYIILLCQSQGRVLDTVRSRCQIYKLNRLDEHEMRKF---ISG 164 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 ++ +E LLA ++G + ++ ++A+L Sbjct: 165 TYNVTNEDEMRTLLA-FSDGIPGKVDDFLNDKSL---KEIRNMVINAILN---------- 210 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + N + ++ N+ + W + + + + + + Sbjct: 211 ---IKKLNPKDIVDAANQLSEYKKLWREICNYFVLYIRDALVYKETGNKELLINLDKIED 267 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPD-RRMGVEMTL 353 ++++A + + + G+ L + VEM Sbjct: 268 IKKIASQFSMKQLNRMVEAVNYGQSNLETNVNMPLTYVEMLF 309 >UniRef50_B0EV71 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0EV71_ENTDI Length = 315 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 125/295 (42%), Gaps = 27/295 (9%) Query: 1 MS---YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS K+RP+ +++G ++ L + + H L G G+GKT+ Sbjct: 1 MSKIQAIPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPH-LLLCGQPGIGKTTSIHC 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 LA L + A ++E++A+ +E R + + Sbjct: 60 LAHELLKDRYKEA-------------------VLELNASDERGIETIRSTIKSFCEKKLV 100 Query: 118 ---GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ +F AL +T+E + +F+LA P+K+ I SRC + Sbjct: 101 LPDNLPKIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLT 160 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 + L E++ ++++ I E++ E A++ L +EG +R A++ Q A G+++ Sbjct: 161 FRPLGEEELMNRIKEIARCENVDIEDDAVKALEIVSEGDMRKAINAL-QTCAIIQGRITK 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + V D + ++ ++ + + + I + G + ++ ++ + Sbjct: 220 EQVYQRNDLPSADNIIQAIQLCLKKDFDGALIEIKKVQQLGFDGNDIMDMIVRMF 274 >UniRef50_C1EC47 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EC47_9CHLO Length = 355 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 139/331 (41%), Gaps = 30/331 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP +DV + ++ + S R+ + L G G GKTS +AK L Sbjct: 31 QMWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPY-LLLYGPPGTGKTSTILAVAKELY 89 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---RF 120 +E++A+ ++ R+ + G F Sbjct: 90 GPQ-------------------FSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNAGF 130 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE +++ + AL + +E+ +H +F L K+ + SRC +F L Sbjct: 131 KLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGP 190 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ--AIASGDGQVSTQAVS 238 ++ +++ ++ +E++ A+ + R G +R L++ GDG + +V Sbjct: 191 NAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVY 250 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQL 297 A G + ++ ++ +N + +A + RG+ ++ ++ + R+ M QL Sbjct: 251 ATTGQPRPEDIEAIAGVLLNSNFKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQL 310 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + A L +DMA +E R+ + +QL Sbjct: 311 ARANLVSDMADVEYRL----AYVTHERLQLM 337 >UniRef50_D0MDY9 DNA polymerase III, delta prime subunit n=2 Tax=Rhodothermaceae RepID=D0MDY9_RHOM4 Length = 391 Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 150/407 (36%), Gaps = 66/407 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ ++GQ+ V+ AL L+ R+ HAYLF G G GK + A + A+ L CE G + P Sbjct: 1 MTWDRIIGQKRVVEALRRALAQQRVAHAYLFYGPDGTGKRAAALMFAQALQCEQG-GSDP 59 Query: 73 CGVCDNCREIEQGRFVDLIEID-------------------AASRTKVEDTRD------- 106 CG C C ++++ D+ + A V+ R Sbjct: 60 CGQCVPCTKVQRLIHPDVQVMLPHPSDADPDDLYERLQRLAAEPYATVDYIRRPVLDDPT 119 Query: 107 -----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 L +V + P GR+KV ++ + + + NA LK LEEP Sbjct: 120 RASNKQAFYSVARINESLRRSVSFKPLEGRYKVAILIDADRMRVEAANAFLKLLEEPGPQ 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 F+L T+ P L T+ SRC L E I L + E + + +LAR Sbjct: 180 TVFILTTSRPDHLLPTVRSRCQHLRFDPLPAEAIAQAL---VEREGV--DEARAMVLARM 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A+GS AL L + + D +QAL+ + + E ++ L+ Sbjct: 235 ADGSYSRALDLLENEVL----------------QADREQALAFLRQAYRFHSEALVDLVE 278 Query: 270 EAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + +A G E + LL MLG + + + + + +R + +P D++ Sbjct: 279 QLSALGRERLKGLLQLMLGWVRDLVLFRTLGDGAELVNLDQQEAIRRFCQNLPEADLEGM 338 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSF 375 + L + + + + + Sbjct: 339 ARLLEEALELIERNVQPFLVLSVLAAALRDAMHGRAPERLVPALDDP 385 >UniRef50_B1I166 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I166_DESAP Length = 338 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/340 (25%), Positives = 130/340 (38%), Gaps = 25/340 (7%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 ++GQE + G + HAYLF G GVGK S+AR LA+ L C T CG Sbjct: 2 LDGIIGQELAKRYFQRAVEGGCLAHAYLFHGPAGVGKKSLARALAQALVCNTAE-NNSCG 60 Query: 75 VCDNCREIEQGRFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 +C CR G DL +D A + R+L + Y P G + L+ E L+ Sbjct: 61 LCPACRMFLAGSHPDLRVLDGAEKSIGIAQVRELQQALVYRPY-GARHLCLVQEAEGLTA 119 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKTLEEPP V F+L + P++LP T++SRCL+ + L ++I L Sbjct: 120 EAANALLKTLEEPPGPVLFILTSARPERLPPTVVSRCLKIPFRPLTRDEITSGL------ 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E + + + L AR A GSL A L + + L + + + Sbjct: 174 ETMGFKGDMVPLAARLAGGSLGRAAELAAGGDGLDWREKAANMAEEFLSGIGTAELFA-- 231 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + + A ++ Sbjct: 232 ------RARELGERAEMLVRTEYLLLWYRDL--------LLWRETGFEGLLINADRLEQV 277 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 R AR + T+ RK+L + R+ E Sbjct: 278 RVQARLADGPALARSIATIEDTRKKLLANVNVRLAAEGLC 317 >UniRef50_A5E7K0 Activator 1 41 kDa subunit n=1 Tax=Lodderomyces elongisporus RepID=A5E7K0_LODEL Length = 402 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 67/355 (18%), Positives = 130/355 (36%), Gaps = 78/355 (21%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + K+RP+ DV Q+H + L +S G + H LF G G GKTS LAK L Sbjct: 34 HTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPH-MLFYGPPGTGKTSTILALAKQL 92 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--- 119 + ++E++A+ + R + N Sbjct: 93 YGPNLYKSR------------------VLELNASDERGISIVRQKIKNFAKLTVSNPTED 134 Query: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 135 DLRNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRC 194 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE-----PRALQLLARAAEGSLRDALSLTDQAI 225 +F K L+ E ++L++I EE++ + L + R + G +R A++ A Sbjct: 195 SKFRFKLLNNENSLNRLKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSAS 254 Query: 226 ASGD--------------------------------------GQVSTQAVSAMLGTLDDD 247 G ++ ++ G L D Sbjct: 255 KLSSSLQLENCKNDMNEDNKGESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDT 314 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 L +VE++ + N ++ L+N+ + G + +++ LH + + +L Sbjct: 315 LILQMVESIKQKNEGILINLVNDIISSGWS----VQQLIDQLHDQLVWDDTIDSL 365 >UniRef50_A4RSQ7 Replication factor C subunit 5 (36kDa), probable n=2 Tax=Ostreococcus RepID=A4RSQ7_OSTLU Length = 332 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 62/340 (18%), Positives = 128/340 (37%), Gaps = 26/340 (7%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 K+RP ++VV + ++ + G++ H LF G G GKTS LAK L Sbjct: 12 ALPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPH-LLFHGPPGTGKTSTILALAKEL 70 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQ-YAPARGRF 120 ++E++A+ + R ++ P F Sbjct: 71 YG-------------------LNFSNMVLELNASDARGINVVRDEIQSFASTMRPFSTTF 111 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DE +++ + AL + +E+ +H +F L K+ + SRC +F + Sbjct: 112 KLVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIAS 171 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 + +L HI+N E+ + +L + + EG +R +++ Q+++ V+ A+ + Sbjct: 172 GDMLQRLRHIVNSENFSISDNSLATIQKLGEGDMRKTVNIL-QSVSLSASVVTDDAIHLI 230 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIAMVQLSP 299 G + Q L+ ++ + N + ++ + L + M + Sbjct: 231 TGHVGQLQVDELLRFLLNEPLQGTFEHFNRLKCTQNFALVDIVKPLSESLLTLHMAAGTR 290 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 A L ++ IE + R E+ Sbjct: 291 ARLLRGLSDIEYSLSFACSE--KNQTLYLISLFHQARFEM 328 >UniRef50_Q46C63 Replication factor C small subunit n=19 Tax=root RepID=RFCS_METBF Length = 334 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 68/341 (19%), Positives = 139/341 (40%), Gaps = 32/341 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++ K+RP V GQE + L + ++ + H LFSG GVGKT+ A +A+ + Sbjct: 9 EIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPH-LLFSGPPGVGKTASAVSIAREIF 67 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--FK 121 E + E++A+ ++ R + N G FK Sbjct: 68 GEDLWRE------------------NFTELNASDERGIDVVRTKIKNFAKTAPMGGAEFK 109 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE L+ + +AL +T+E + +F+L+ ++ I SRC F + L E Sbjct: 110 IIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDE 169 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAVSAM 240 IR +LE+I ++ ++ + L ++G +R A++ A + +S + Sbjct: 170 AIRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRT 229 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEML--------GLLHR 291 T + + +L+E + N +N G+ E ++ ++ ++ Sbjct: 230 TATANPEDIRNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILD 289 Query: 292 IAMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQT 331 + + + L + + I+ R+ E A I + ++ Sbjct: 290 LGLSEKRIVELVDIIGEIDFRLTEGATEKIQLEALLAHFAL 330 >UniRef50_Q8IKK4 Replication factor C3 n=7 Tax=Plasmodium RepID=Q8IKK4_PLAF7 Length = 344 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 117/344 (34%), Gaps = 32/344 (9%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP D++ E V++ + + G + H L G G GKTS + K L Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPH-LLLHGPPGTGKTSTILAVCKELYG 72 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF---- 120 + R ++E++A+ + RD + + Sbjct: 73 D-------------------KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKT 113 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DE ++ + NA+ + +E ++V+F L K+ I SRC F L Sbjct: 114 TLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPL 173 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAV 237 E ++++ I E++ + L R G +R L+ S + + Sbjct: 174 KKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVI 233 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQ 296 + L + ++E + + + ++ +G + +++ + + Sbjct: 234 LSTLDIPLPSETKKILEYFTKGSIKESYEFVSNLQYDKGYSTKDIMMCL---YESVLTYD 290 Query: 297 LSPAALGNDMAAIELRMRELARTIPPT-DIQLYYQTLLIGRKEL 339 +A + + + + R EL Sbjct: 291 FPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTEL 334 >UniRef50_A0EG83 Chromosome undetermined scaffold_95, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EG83_PARTE Length = 384 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 66/348 (18%), Positives = 136/348 (39%), Gaps = 41/348 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + K+RP+T +V G ++ L +G + + + G G+GKTS LA+ Sbjct: 3 NNLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPN-IILVGPPGIGKTSSVLCLARQ 61 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RG 118 + ++ + ++E++A+ +E R+ + G Sbjct: 62 ILGDSIKES-------------------VLELNASDDRGIETVREQIKGFAQKKVNLQEG 102 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + K+ ++DE L+ + AL + + +F+L+ D KL I SRC L Sbjct: 103 QHKIVILDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRL 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++IR +L I+++E + + L L AEG +R A++ QA +G G V+ + V Sbjct: 163 GEKEIRDRLLEIISQESVTYTKDGLDALTFTAEGDMRQAINNL-QATFTGFGLVNRENVF 221 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL-------------VEM 285 + + D +++ M++ + +L+ G + ++ Sbjct: 222 KVCDVPNVDDLKKILDHMLKGEFQPAQSLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDL 281 Query: 286 L-GLLHRIAMVQL---SPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 L +IA ++ A I +M + + + I Sbjct: 282 QFEFLRQIAFLKARILEGIADVLIDVWIHCQMLQYIQKLSQQMIIQML 329 >UniRef50_B3T464 Putative ATPase family associated with various cellular activities (AAA) n=3 Tax=environmental samples RepID=B3T464_9ARCH Length = 318 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 60/364 (16%), Positives = 135/364 (37%), Gaps = 57/364 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 S + K+RPQ ++++ Q+ ++ ++ + L + H LFSG+ GVGKTS A +++ Sbjct: 4 SSVMWVEKYRPQKISELINQKEIVGSINSMLKNQSELPH-LLFSGSAGVGKTSAALCVSR 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP---AR 117 + + +E++A+ + R+ + Sbjct: 63 EILGKHWRD-------------------YTLELNASDERGINMVRERVKKFSRFAGLDTE 103 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 FK+ ++DE ++ + AL + E+ + +F+L + K+ I SRC+ F Sbjct: 104 IPFKIIILDEADEMTADAQTALRRITEDTAKICRFILIANNLSKIIKPIQSRCVVFKFTK 163 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + ++I QL+ I +E I + + L + +G LR A+++ A+ G V+ V Sbjct: 164 ISDKEILSQLKSIGKKEKIKADEKGLSAICDYTDGDLRHAINILQ--AAASSGNVTESVV 221 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQ 296 +++G + +++ ++ + E G+ L Sbjct: 222 KSVVGLTKTNDVQDVLKLALDGKISDARDKMIELIKVYGMSESDFL-------------- 267 Query: 297 LSPAALGNDMAAIELRMRELARTIP-PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A +++ +T+ + + + + L Sbjct: 268 ---------------KYINQAVFNSKANNLEGMLETIAKYDYRILVGANPEIQLSALLAE 312 Query: 356 ALAF 359 F Sbjct: 313 LTKF 316 >UniRef50_B0ERC2 Replication factor C subunit, putative n=2 Tax=Entamoeba RepID=B0ERC2_ENTDI Length = 329 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 132/325 (40%), Gaps = 34/325 (10%) Query: 1 MSYQ-VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Q + K+RP+T DV GQE V+ L + L G + + LF G G GKT+ +A Sbjct: 1 MSGQNAWSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPN-LLFFGPPGSGKTTSILAVA 58 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG- 118 L ++E++A+++ +E R L N Sbjct: 59 HELFQGYFKE-------------------RVLELNASNQRGIEMVRTTLKNYAMQDVTHY 99 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 +K+ ++DE L+ + AL + +E+ ++ +F L ++ I SRC++F Sbjct: 100 DGIPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFR 159 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 AL E + ++L+ I +E + A+Q ++ +EG LR + L + + V+ Sbjct: 160 FSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTP 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 Q +S + G + + ++ + + +E +L L + + Sbjct: 220 QDISNVAGVVPSKEITEIIHLCQNGSVNDLYLKAMSLV---VEQNYSADSILSQLRDVYI 276 Query: 295 VQLSPAALGNDMAAIELRMRELART 319 + L ++ +A++ Sbjct: 277 ----EDCVNLTNQERCLFLQLIAQS 297 >UniRef50_Q4FYR7 Replication factor C, subunit 4, putative n=7 Tax=Trypanosomatidae RepID=Q4FYR7_LEIMA Length = 360 Score = 184 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 70/361 (19%), Positives = 134/361 (37%), Gaps = 27/361 (7%) Query: 1 MSYQ--VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 MS K+RPQT D+VG ++ L G + + L G G GKT+ L Sbjct: 1 MSTVDTPWVEKYRPQTVVDIVGNTEAISRLQVIAKQGNLPN-LLLCGPPGTGKTTSMLCL 59 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA---- 114 A+ L ++ T + G ++ ++E++A+ ++ R+ + Sbjct: 60 ARDLLLQSTDTGSA-GASPGG-AMKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTL 117 Query: 115 ---------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 K+ L+DE ++ + AL +T+E +F A + Sbjct: 118 PKKFFSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNS 177 Query: 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219 ++ I SRC K L I +L +++ E++++ L+ L AEG LR AL+ Sbjct: 178 SRIIEPIQSRCAVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALN 237 Query: 220 LTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA-MVEANGERVMALINEAAARGIEW 278 QA +G G V+ V + +++ A + + N E +N RG Sbjct: 238 AL-QATHTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAP 296 Query: 279 EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLIGRK 337 ++ + A + S + + +A + P + ++ + Sbjct: 297 VDVIATFFKVAQTHARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAALE 356 Query: 338 E 338 Sbjct: 357 N 357 >UniRef50_C8V679 Subunit of heteropentameric Replication factor (Eurofung) n=18 Tax=Saccharomyceta RepID=C8V679_EMENI Length = 398 Score = 184 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 127/343 (37%), Gaps = 50/343 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T DV G + +L + + ++ H L G G GKTS LA+ + Sbjct: 45 LPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPH-LLLYGPPGTGKTSTILALARRIY 103 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY---------- 113 + ++E++A+ ++ R+ + Sbjct: 104 GSKNMR------------------QMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPS 145 Query: 114 ---APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + FK+ ++DE ++ + AL + +E+ + +F + KL +LSRC Sbjct: 146 ATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC 205 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD- 229 +F L + IR ++ ++ +E + +P A+ L + G +R AL++ AS Sbjct: 206 TRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKP 265 Query: 230 ---------------GQVSTQAVSAMLGTLDDDQALSLV-EAMVEANGERVMALINEA-A 272 ++ + + + +V + ++ + +N Sbjct: 266 LPIKNAPQDQAVPEPETITNETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKI 325 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 +G+ +L + L+R+ + + +A IE R+ Sbjct: 326 NKGLALADILSALGEQLYRLEVPAQTRITWLEGLAEIEWRLSA 368 >UniRef50_Q8QNA5 EsV-1-182 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNA5_ESV1 Length = 326 Score = 184 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 119/300 (39%), Gaps = 35/300 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+ DVV +H+ L G + H LF G G GKTS LA+ L Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPH-LLFHGPPGTGKTSTILALARTLL 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 E + ++E++A+ ++ RD + Sbjct: 61 GEGNMRER------------------VLELNASDERGLDVVRDKIKTFSKMSISSFQPGC 102 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 FK+ ++DE ++ + +AL +T+E +F L K+ + SRC +F Sbjct: 103 PPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFST 162 Query: 178 LDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L + ++ +L HI E+I E L + +++ G +R A++L +V+ Sbjct: 163 LAPKSMKGRLLHICERENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVS--QQPRVTP 220 Query: 235 QAVSAMLGTLDDDQALSLVEAMVE-----ANGERVMALINEAAARGIEWEALLVEMLGLL 289 +++ + G + + L A+ + E V ++ G +L E+ G + Sbjct: 221 ESIVEIAGEVPERVFDMLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRV 280 >UniRef50_P73507 DNA polymerase III subunit n=2 Tax=Chroococcales RepID=P73507_SYNY3 Length = 1116 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 115/530 (21%), Positives = 196/530 (36%), Gaps = 25/530 (4%) Query: 29 ANGLSLGRIHHAYLFSGTR----GVGKTSIARLL-AKGLNCETGITATPCGVCDNCREIE 83 S +I+ L +G + IA L AK + + P + I Sbjct: 460 QRAFSRKKIN--LLLNGLPIEDIPPVQNPIAEALTAKPITTQKWEQWPPASGYRTWKSIP 517 Query: 84 Q-GRFVDLIEIDAASRTKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 + E+++ ++ +VE DL +++ A G L+ HMLS +FNALLK Sbjct: 518 SPQWHTNFEEVESVTKGQVEKVYDLEVEDNHNFVANG----LLVHNCHMLSTAAFNALLK 573 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEPPE V F+LATTDPQ++ TI+SRC +F + + ++ + L +I E+I + Sbjct: 574 TLEEPPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPLQAMVDHLRYIAGRENINIDQP 633 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 AL L+A+ A G LRDA SL DQ ++ V ++G + + L+L+EA+ + Sbjct: 634 ALTLVAQIANGGLRDAESLLDQLSLL-PDLITPDKVWDLVGAVPEQDLLALLEAIASDDA 692 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN--DMAAIELRMRELART 319 E ++A + RG E +L + + + Q +P A + + A Sbjct: 693 ETLLATCRQILNRGREPLVVLQNLASFYLNLLIAQTAPQRSDLVAVTAETWQALCDTAPQ 752 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVA 379 I Q L ++ R+ +E+TLL L + Sbjct: 753 WQRGVILQGQQKLKESEIQIRNTTQPRLWLEVTLLGLLPSACGLDTGAVSQTAVRTPVAQ 812 Query: 380 PTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRA 439 P P+ V P + V P + + + A Sbjct: 813 PITPPKPSNVVTFPGGSHNHLTVVDSPTMIPVSEPIVLEEKLEADVEPSSFEPSNAHWDL 872 Query: 440 RPVNNAALERLASVTDRVQAR-------PVPSALEKAPAKKEAYRWKATTPVMQQKEVVA 492 + + L L +++ + +A ++ ++ A Sbjct: 873 TQLWSETLNNLGALSQSLFKSFGSLINLVGNNATVSVTTQQLLKIAAGKKDELEAALGQA 932 Query: 493 TPKALKKALE--HEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA 540 +++K L TPE +A A + S P A Sbjct: 933 CGQSVKVNLVVGKPSTPETTPVNSAPPPSHSKPPAFAPEPSPPPTAAVNA 982 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 4/138 (2%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQ + L+N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQTFADLVGQTAIAATLSNAIEQERIVPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC TATPCG C CR I G +D+IEIDAAS T V++ R++++ Q+AP + Sbjct: 61 SLNCIAGDRPTATPCGQCATCRAITNGSALDVIEIDAASNTGVDNIREIIERAQFAPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSF 136 R+KVY+IDE L+ S Sbjct: 121 RYKVYVIDEC--LTGDSQ 136 >UniRef50_B8FKB9 DNA-directed DNA polymerase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKB9_DESAA Length = 330 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 134/344 (38%), Gaps = 34/344 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--------P 72 Q+ L L+ L+ + HA +F+G G+GK A A NCE P Sbjct: 7 QKRALGFLSGILAKNNVAHALVFTGDAGLGKRQAAVHFAMARNCEGTPDPESAMFGSQGP 66 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CGVC +CR+I G D++ ++ K+E RDLL + P+ G+ +V LI + Sbjct: 67 CGVCGSCRKILSGNHPDVLFVEKRGASIKIEQIRDLLSVLAMRPSEGKTRVVLISGAGDM 126 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + S NALLK LEEP + F+L +L T++SRC + L V + L Sbjct: 127 TASSSNALLKALEEPSDTTCFVLLAGQKSELLPTVVSRCQEIRFSPLPVSFLIESL---- 182 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E+ +P A A GSL A +L G + ++ Sbjct: 183 --ENDGVDPDLAHACAFIASGSLDKARALASDQ-----------------GLARRNWLVN 223 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + A+ + + + L A + L + L + + + +P + + Sbjct: 224 QLCALEDQGMGQALLLAEFLAKDKNAAQEDLNWIRTWLRDLLVSRYAPQRV--INRDLMG 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + + P + Q + +L + R+ +E +R Sbjct: 282 LVNSRSAKTAPEVLLEKLQAVADCENDLTRNVNTRLSMENLCMR 325 >UniRef50_C6J5H0 DNA polymerase III n=2 Tax=Bacillales RepID=C6J5H0_9BACL Length = 326 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 116/344 (33%), Gaps = 30/344 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F +++GQE L + L I HAY+FSG G G+ +A + L C G Sbjct: 1 MSFQEIIGQETAKQLLQSSLRRREISHAYIFSGPPGSGQMEMAMAFVQALFCTRG-GDDA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR++ G DL I K+E RDL Y G K Y+IDE + Sbjct: 60 CGECLECRKVLHGNHPDLFTIKPDGATIKIEQIRDLQRIFSYRSESGNPKAYIIDEAEKM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP +L + + + L TI SR ++ E + IL Sbjct: 120 TVQAANSLLKFLEEPPSPAVAILLSDNGRALLPTIQSRAQWVPFSPVNPETML----QIL 175 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + A G L L Q + V L Sbjct: 176 ANEG--FSTTLARSAVHLAAG-LGPCRDLIQQNWFAEVRNV----------------VLQ 216 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI---AMVQLSPAALGNDMAA 308 L + + G ++ G L + L H + L Sbjct: 217 LGKEIAGRGGSPIITAQQMLFKSG--LTDHLDMLFSLFHLWFKDMIHALYHKHDQIVFID 274 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + + +K+L + + VE Sbjct: 275 ELQFINQHCSSRSAEQWIEAMALAAESKKKLRQHMNANLCVEQF 318 >UniRef50_C0WCP0 DNA polymerase III delta' subunit n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCP0_9FIRM Length = 326 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 128/348 (36%), Gaps = 29/348 (8%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L R A LF G G+GK +A A+ C T C Sbjct: 2 WDTILGHEANKIFLGNMLQGERKTPALLFYGPDGIGKKKLAYEFARSFLCLDDPTHDDC- 60 Query: 75 VCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +CR D I ++ +E +++ ++P +KV LID + Sbjct: 61 KCRSCRAFCGESHPDFIYVEGQGARHDILIEQIKEVEKKAVFSPVLSPYKVCLIDGADRM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP + F+L ++ ++ TI SR + + L E+ +E + Sbjct: 121 REEASNSLLKLLEEPPTYWLFILVASEISRILPTIRSRLMAIRFEPLHREKAVRVMEELS 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + + LAR ++GS AL L + + A+ M G D S Sbjct: 181 VPQG--------ETLARLSDGSPGKALHLAEAEALMWRER----ALFIMEGIEDPYLMAS 228 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L + + + + L +L +L M+Q + L Sbjct: 229 LARLEWLGDMDV------------DQTQTFLEMLLLILRDAMMIQE-GSGLLLYNEDERE 275 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 R+ + + + ++ L + RM +E L F Sbjct: 276 RIASIFASFTLSALKKSLLETERFYLGLNKGVNTRMILEALFLEIHTF 323 >UniRef50_A1HPS4 DNA polymerase III, delta prime subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPS4_9FIRM Length = 338 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 138/349 (39%), Gaps = 28/349 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + ++VG + + L L GR+ HA LF+G GVGKT +A+ A L C+ A P Sbjct: 1 MFWDEIVGHDETIKMLQGMLRRGRLPHALLFAGPEGVGKTLVAKAFAAALLCQ--EAAAP 58 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR+ + L I A K++ R L A +++ +I++V + Sbjct: 59 CGRCLICRQAAEFAHPALQVIVPAGNTIKIDQIRQLQHEAALAG-GDEWRLCIIEQVERM 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP + F+L T P + TI SRC L E + L Sbjct: 118 TAQAANSLLKLLEEPPPRLIFILLTALPHAVLSTIRSRCQVLRFAPLPPEVLAAALSRR- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + A ++ AR + G + AL+L G DQA + Sbjct: 177 -----GYGEEAARVAARLSGGRMGTALALLTPG-----------------GMALRDQAAA 214 Query: 252 LVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + AN E V +L+ ++ A L + LL + ++ + Sbjct: 215 ILANLPAANMETVWSLVAMLDKLAPADFTAFLHYLTCLLRDLLLLADGHRPDLLFNLDLT 274 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 + L + P+ + + + + R+ E + + Sbjct: 275 HELAGLVQAWTPSALFAALAAVRDAGRAVQGNASIRLTCEALFIHLVDL 323 >UniRef50_C5LVK3 Replication factor C3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LVK3_9ALVE Length = 354 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 118/331 (35%), Gaps = 33/331 (9%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP+T D+V + ++ + + + + H L G G GKTS A+ Sbjct: 26 NELPWVEKYRPKTLDDLVAHQEIIETIKRFVKMNALPH-LLLHGPPGTGKTSTILACARQ 84 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGR- 119 + P G ++E++A+ ++ R+ + V Sbjct: 85 MY--------PPGQLR----------QYVLELNASDARGIDVVRECIKQFVSSRSMFSGS 126 Query: 120 -----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 K+ ++DE ++ S AL + +E+ + +F L K+ + SRC +F Sbjct: 127 LGTNMPKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFR 186 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVS 233 L + R +++++ E + + L R EG +R L+ ++ V Sbjct: 187 FAPLKDAEARMRVDYVAKCEGVKISEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVD 246 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRI 292 + + G + L + + M +I E G + ++L +H Sbjct: 247 ANIIHKVAGLPETSTIDRLEAVLCQKPLREGMMVIEELRVKHGYS----VADLLREIHDR 302 Query: 293 AM-VQLSPAALGNDMAAIELRMRELARTIPP 322 + V + P A + L+ Sbjct: 303 MVTVDMPPRARNLLFRDLAEIEYRLSSGCSE 333 >UniRef50_C5DDN5 KLTH0C02442p n=2 Tax=Saccharomycetaceae RepID=C5DDN5_LACTC Length = 356 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 62/374 (16%), Positives = 130/374 (34%), Gaps = 60/374 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ DV Q+H + L L + H LF G G GKTS L K L Sbjct: 24 KPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPH-MLFYGPPGTGKTSTILALTKELY 82 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----APARG- 118 + + ++E++A+ + RD + + P++ Sbjct: 83 GPALMKSR------------------VLELNASDERGIAIVRDKIKSFARLTVSKPSQND 124 Query: 119 -------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 +K+ ++DE ++ + +AL +T+E +F L ++ + SRC Sbjct: 125 REKYPCPPYKIIILDEADSMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCS 184 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ----AIAS 227 +F K LD +++++ EE + ++ L+ + ++G LR A+ L Sbjct: 185 KFRFKPLDSSNALSRVQYVAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHL 244 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 Q++ V + GT+ + LV + AN E + + E G +++ ++ Sbjct: 245 DPPQITALTVDELAGTVPTELLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHH 304 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 + + +L + + Sbjct: 305 YYIN-------------------------SDQYSTAFKNKASWLIFDADSKLTNGSNEHI 339 Query: 348 GVEMTLLRALAFHP 361 + ++ + Sbjct: 340 QLLNLAMKLADLYR 353 >UniRef50_C9LJK0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJK0_9BACT Length = 409 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 138/383 (36%), Gaps = 63/383 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT 71 + DV+GQ + L + GR+ HA LF G GVGK +A LA L C Sbjct: 37 MKYDDVIGQAAIKARLRRQVVEGRVPHAQLFCGPTGVGKLPMALALASSLLCTNRTPEGD 96 Query: 72 PCGVCDNCREIEQGRFVDLIEIDA--------ASRTKVEDTRD----------------- 106 PCG C C+ + + DL I +S T +E R+ Sbjct: 97 PCGCCAGCKMVARYAHPDLHFIFPTIRKGSTSSSDTYLEAWRERLLTSPYFDNQDWLAAL 156 Query: 107 ----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 +++ + +G +KV ++ + +S N LLK LEEPP+ Sbjct: 157 QVENQQPTFYVADSNAVIEKLSLVANQGGYKVMIVWQADKMSVEVQNKLLKILEEPPQLT 216 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L T P++L TI SR + L ++ +L +P A + +A + Sbjct: 217 VFILLTDAPERLLPTIASRVQRIDFPLLPERLLQEELSTRN-----HIDPTAARDIAHIS 271 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 GS AL + ML + +L+ + + + Sbjct: 272 NGSYVQAL-----------RHIGVDEEGEML----LENFKTLMRLCYMRKVKDLRDWSDV 316 Query: 271 AAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 AA G E + L L L+ + A+L + AA AR I +I+ Sbjct: 317 AAGWGRERQKRFLDYALKLVRENFIYNFRQASLNYETAAEAEFSVNFARFINERNIEDML 376 Query: 330 QTLLIGRKELPYAPDRRMGVEMT 352 R+++ + RM T Sbjct: 377 TLFTEARRDIAANVNARMVFFDT 399 >UniRef50_C4Q6I1 Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Schistosoma mansoni RepID=C4Q6I1_SCHMA Length = 468 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 24/290 (8%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP D+VG E+ + L+ G + + + +G G GKT+ LA+ L Sbjct: 154 PWVEKYRPIELEDIVGNENTICRLSVFARDGNLPN-IIIAGPPGCGKTTSILCLARTLLK 212 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RGRFK 121 A ++E++A++ +E R + GR K Sbjct: 213 SAYKEA-------------------VLELNASNERGIEVVRTKIKMFAQKKVSLPEGRQK 253 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE ++ + AL + +E +F LA D KL I SRC L Sbjct: 254 IIILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTSA 313 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 Q+ +L + E +++ L+ + A+G +R AL+ Q+ G G VS+ V + Sbjct: 314 QVMARLLEVSRFEGVSYTEEGLEAIVFTADGDMRQALNNL-QSTHEGFGMVSSDNVFKVC 372 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 L++ + ++ G E ++ ++ Sbjct: 373 DEPHPMLIKQLIDHCSKGELSAAHKILRHLWTLGYSAEDIITITFRVIKN 422 >UniRef50_B5YJ16 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ16_THEYD Length = 319 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 129/342 (37%), Gaps = 41/342 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ QE + L L +I +A LF G +GKTS A AK LNC Sbjct: 1 MGFNKIISQEKAIKLLKGTLRTKKIPNALLFLGDAYIGKTSTAIAYAKALNCLNSENEDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C CD+C++IEQ D+ I V R++ + V P G++KV +I E H + Sbjct: 61 CDSCDSCKKIEQRLHPDIKIIAPEKDVITVNTIREVEEFVSLKPLEGKYKVVIIKEAHKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA LKT+EEPP +L + LP ++SRC + + L ++ I+ + + Sbjct: 121 NNAAANAFLKTVEEPPFMTTIILICENIHNLPEPLISRCFKVYFTPLSIDAIKKIIPD-M 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 +E + I G ++ + D + Sbjct: 180 QQESFF-------------------------RIIMGKPGLFMSRDILK-----DIQWFSA 209 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 ++ + E N + + E + + + L + ++ + + Sbjct: 210 TLKNIKENNKKAIWK-------DNEEIKWWIDFLCIFLRDSLIKLINKVSSDCCLILPLD 262 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +L I +I Y+ + ++ + ++ + + Sbjct: 263 F--KLKENISVQEIFNLYEEVQNIKRNIDLNLNKSILWNYLV 302 >UniRef50_B7XK33 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK33_ENTBH Length = 298 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 123/290 (42%), Gaps = 34/290 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+L K+RP+T DV+G E ++ + N H LF G G GKT+++++L++ Sbjct: 3 QLLTEKYRPKTLDDVIGNEVIIKLIKNL--DNTFPH-LLFCGPPGTGKTTVSKILSQ--- 56 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 +F ++E++A+ ++ R+ + + K+ Sbjct: 57 ----------------------KFSKVLELNASDERGIDTIRNRIKTFTQLAEQS--KLV 92 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE L+ + AL + +E ++VKF+L K+ I SR + + + Sbjct: 93 IMDECDSLTLVAQQALRRLMEV--KNVKFILICNMINKIIEPIQSRTAILKFEKIPINSF 150 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQAVSAML 241 H L +I N+E I P + L ++G R+ L++ + + + ++ Sbjct: 151 LHLLTNICNKEKILLTPSGIDALIDLSQGDFRNCLNILQGICNVSNDNFNIDDNFLYSIN 210 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 G + Q L ++ ++ N E ++ + + ++ ++ + ++ Sbjct: 211 GIPNKKQLLKIINSIKNKNEEELIVNSEKLFSHKYDYSDIMNGLFKIIKD 260 >UniRef50_P53016 Replication factor C subunit 4 n=3 Tax=root RepID=RFC4_CAEEL Length = 334 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 112/293 (38%), Gaps = 27/293 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+T D+ Q+ V+T L L + H LF G G GKTS A + L + Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPH-LLFYGPPGTGKTSAALAFCRQLFPK 75 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF----- 120 +++++A+ + R + + + Sbjct: 76 NI------------------FHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVL 117 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DEV ++R + A+ + +E+ + +F+L +L ++SRC +F K+L Sbjct: 118 KLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL 177 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E +L I + E L+ + +EG LR A+ Sbjct: 178 PAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNC 237 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 291 + G+ D ++ ++++ A+ +++AL + A + L Sbjct: 238 YLRGSSDSLLISNVCKSILTADVPQIIALTKDITKSCT-GVAFIRRCFQQLMD 289 >UniRef50_A8N2F0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F0_COPC7 Length = 316 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 111/307 (36%), Gaps = 37/307 (12%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 K+RPQ D+VG + L G H + SG G+GKT+ LA L + Sbjct: 5 VEKYRPQVLDDIVGNTDTIERLKVIARDGNCPH-LIISGMPGIGKTTSIHCLAHQLLGDA 63 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFKVY 123 + R ++A+ + ++ R+ + GR K+ Sbjct: 64 YKEGVLELNASDER------------LNASVDSGIDVVRNKIKAFAQKKVTLPPGRHKII 111 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + AL +T+E +F LA K+ I SRC L +++ Sbjct: 112 ILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEV 171 Query: 184 RHQLEHILNEEHIA--------------------HEPRALQLLARAAEGSLRDALSLTDQ 223 +L I E + + L L AEG +R A++ Sbjct: 172 LKRLLEICEMEKVCSGFFYRLPVKGQYLYERQVQYNDDGLTALIFTAEGDMRQAINNLQS 231 Query: 224 AIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + G G VS V + S++ A ++ + + ++E +G ++V Sbjct: 232 THS-GFGFVSADNVFKVCDQPHPIVVQSMIRACLKGEIDPALEKLHELWDQGYSAVDIVV 290 Query: 284 EMLGLLH 290 + ++ Sbjct: 291 TLFRVVK 297 >UniRef50_C9RA67 DNA polymerase III, delta prime subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9RA67_AMMDK Length = 320 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 130/343 (37%), Gaps = 34/343 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F V+GQE L L L GRI HAYLFSG GVGK + A A + C P Sbjct: 1 MVFGVVLGQERALRLLRRDLETGRIAHAYLFSGPEGVGKRTTAEFFACSILC-LAPRERP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 CG C +CR G + + + ++LL V + ++V +ID+ Sbjct: 60 CGECRSCRLFRMGNHPNYYFLAPEQGGSLGIALVKELLSKVYRSA--SGYRVAVIDQAES 117 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + NA+LK LEEPP V FLL T+ + L T++SRC + L + L+ Sbjct: 118 LTLEAQNAMLKLLEEPPRLVCFLLVTSQKEALLPTVVSRCREVKFGRLPRSVVAACLKER 177 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 P LA + GSL AL+L++ ++ + +L L Sbjct: 178 ------GFPPEEAACLASLSGGSLGKALTLSE-----ERVKIWRERALELLVAPRLRTLL 226 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 S E + + + +L + + QL+ E Sbjct: 227 SW-EEVKDKDLA----------------LTVLDFFTLWVRDFLVFQLTREPKLLLNGDRE 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + E +P + + R+ L + + +E + Sbjct: 270 EKFWEETD-LPLDYLLVAGDLADKARQWLRFNVRPAVCLEGLV 311 >UniRef50_Q0C927 Activator 1 subunit 3 n=19 Tax=Leotiomyceta RepID=Q0C927_ASPTN Length = 398 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 124/343 (36%), Gaps = 51/343 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T DV G + +L + + R+ H L G G GKTS LA+ + Sbjct: 44 LPWVEKYRPNTLDDVSGHQDILATINRFIEANRLPH-LLLYGPPGTGKTSTILALARKIY 102 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA------- 116 + ++E++A+ ++ R+ + Sbjct: 103 GSKNMR------------------QMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQ 144 Query: 117 -------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 FK+ ++DE ++ + AL + +E + +F + KL +LSR Sbjct: 145 SGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSR 204 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-- 227 C +F L IR ++ ++ +E I +P A+ L ++G +R AL++ AS Sbjct: 205 CTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSI 264 Query: 228 --------------GDGQVSTQAVSAMLGTLDDDQALSLV-EAMVEANGERVMALINEAA 272 ++ + + + ++ + ++ + IN Sbjct: 265 PLPMKNAPKDQVRPEAEVITNETIYDCIAAPYPADIQEIMTTLLTTSDITSCLNTINTLK 324 Query: 273 AR-GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A G+ +L + L R+ + + +A IE R+ Sbjct: 325 ANKGLALADILEALADQLQRLEVPPQTRITWLEGLAEIEWRLA 367 >UniRef50_A8P0Z2 Replication factor C, 37kDa subunit, putative n=1 Tax=Brugia malayi RepID=A8P0Z2_BRUMA Length = 315 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 115/300 (38%), Gaps = 29/300 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V Q V++ L L + + LF G G GKTS A L + L Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPN-LLFYGPPGTGKTSAAIALCRQLF 79 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 T ++E++A+ + R+ + Sbjct: 80 RNTDTYRD-----------------RVMEMNASDERGINIVRNKIKEFARRAVSSHLPDG 122 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 KV ++DE ++ + AL +T+E +F L ++ + SRC +F Sbjct: 123 SPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFR 182 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K++ E +L+ I E+I +P A+ L +G +R +++ Q I+S ++ Sbjct: 183 FKSISSESQEKRLKWICQNENIEFDPLAISELIELCDGDMRKSVTAL-QTISSCHKKLIP 241 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI-EWEALLVEMLGLLHRIA 293 V LG + DD V + N ++ A I G E E +++ ++ Sbjct: 242 ADVRQFLGAVPDDVVQQFVASCRSRNHNQLYACIENIRREGYGECEMRILDGANEFLQLL 301 >UniRef50_C6VRW3 DNA polymerase III gamma/tau subunit n=2 Tax=Flexibacteraceae RepID=C6VRW3_DYAFD Length = 372 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 127/395 (32%), Gaps = 67/395 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D+ G E++ + L + + HA LF G ++A + +NCE Sbjct: 1 MLFRDIPGLENIKSTLRRSVRNSHLAHAQLFDYPAGGAGLAMALAFSTYINCENRNDDDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--------------------------------------- 93 CG C +C ++ + D I Sbjct: 61 CGTCASCVKMSKLVHPDFHFIFPIATSKKVDGKNSEAFLPLCRSFLLDNPYRVLPDWLDH 120 Query: 94 ----DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + VE+ R +L + G +K+ LI + +++ S NA+LK LEEPPE Sbjct: 121 IGADNKQGNISVEEARGILRKLSVKAYEGEYKILLIWKPDIMNAASSNAILKILEEPPEK 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + KL TI+SR + + A +I+ L+ +A Sbjct: 181 TLFLLVSDQSDKLLTTIISRTQRITIPAFSDSEIKSYLKQQ------EVSDAVANQVAFL 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 ++G++ +AL L + + + + + ++ L + Sbjct: 235 SDGNMAEALKLVQEEQ-----------------DDRSAWFADWMRSSYKFDVAHLVKLAD 277 Query: 270 EA-AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + + LL L L + + L ++ ++T+ ++ Sbjct: 278 SYDVMSKEKQKGLLEYALRLFRDMLVWSHGAGELLRVPQEELTFVQNFSKTVNFESLERM 337 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + +M L F R Sbjct: 338 IGEVNTAYYHIERNVRAKMVFLDLSLTVGQFFQRR 372 >UniRef50_Q1D8K6 DNA polymerase III, delta' subunit n=2 Tax=Cystobacterineae RepID=Q1D8K6_MYXXD Length = 344 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 84/359 (23%), Positives = 134/359 (37%), Gaps = 44/359 (12%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T A V+GQ + AL L G +HHAYLF+G GVGK A LA+ L C Sbjct: 1 MTLATVLGQPRAVDALQAALRSGAVHHAYLFAGPEGVGKELAAVGLAQALTCPEQPDVG- 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-------------------KVEDTRDLLDNVQY 113 CG C +C+ +E+G D+ + +VE R L + + Sbjct: 60 CGACASCQRVERGLHPDVTWVMPDDERVSRGLAGRSDFTGTPSRELRVEQVRQLQERIAL 119 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 R KV LI ++ + NA LKTLEEPP +L + +L TI SRC + Sbjct: 120 RGLESRRKVALIVSAQTMNVQAQNAFLKTLEEPPSDTTIILVASAIDRLLPTIRSRCGKV 179 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 H L V+ + ++ E + L A A GSL A++L A++ ++ Sbjct: 180 HFGPLPVDMVAQRV-----AEARKLDAETAMLAAVMAGGSLGRAMALDVDALSRRKDTLT 234 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 EA+ + ++ E E+ L + +A Sbjct: 235 A------------------FEALRGEDAVGLLRFAEAHGGSREEAESTLELLALWTRDVA 276 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 +V+ + + R++A + + L R + R+ +E Sbjct: 277 LVKSGLESGL-ANRDMVDLARQVAARTSDILLHRRHSLLDAARAAIARNGAPRLQLERM 334 >UniRef50_C6CRH9 DNA polymerase III, delta prime subunit n=2 Tax=Paenibacillus RepID=C6CRH9_PAESJ Length = 325 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 120/347 (34%), Gaps = 24/347 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + V GQ L + L G++ HAYLF G G G+ ++AR AK L C +G Sbjct: 1 MSMEQVAGQWKAKRILKHALQSGKVSHAYLFYGPSGTGRKAMARAFAKALFCTSG-GDDA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C CR+ E G DL+ I K++ R+L + Y + KVY+++ + Sbjct: 60 CDHCLECRKFENGNQPDLLTITPDGQSIKIDQIRELQRELAYRGSGASRKVYIVERAETM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEP + +L T + Q + TI SR ++ L Sbjct: 120 TLQAANSLLKFLEEPLSPIVAILITDNGQAVLPTIRSRAQWVPFLPFSASEMLQSLVD-- 177 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E P + + + G L A + Q + V Q L Sbjct: 178 --EG--ASPTLARAAVQLSSG-LDGAREIIQQNQFAEIRNVVIQLGKESLTRFTAGML-- 230 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + G E + +L ++ + Q Sbjct: 231 -----------TAQQQFFKTDLAG-EAQLMLSLLVLWFKDMIQFQAGRQES-IVYIDQLD 277 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + + A P + L K++ ++ VE L+ Sbjct: 278 WISKHAFNRPIESWIACIEHTLEAGKKIRSNVSPQLAVEQLLVNLQE 324 >UniRef50_Q73FH7 DNA polymerase III, delta prime subunit n=68 Tax=Bacillus RepID=Q73FH7_BACC1 Length = 327 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 126/346 (36%), Gaps = 32/346 (9%) Query: 13 QTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 +T+ + Q + L N ++ RI HAYL G +G GK + A +AK C Sbjct: 3 KTWEQLSAIQPIGVKMLMNSIAKERISHAYLLEGGKGTGKFATAIQMAKSFLCSQRNGVE 62 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC VC NC+ I+ G +L + K + DL + KVY+I+ Sbjct: 63 PCHVCTNCKRIDSGNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGLEANKKVYVIEHADR 122 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ ++ N LLK LEEP +L T ++ TILSRC + L E + +L+ Sbjct: 123 MTANAANTLLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQD- 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + L LA S +AL+L + + + Sbjct: 182 ---EGVTTS---LSTLAAQLTNSFDEALALCSDEWFAQARAL----------------VI 219 Query: 251 SLVEAMVEANGERVMALINEAAA---RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L EA+ E + + + + + + L +L + + VQL Sbjct: 220 KLCEAL-EKDKASIFFVQEKWGKHFGEKEQLQQGLDMLLLIYKDLLYVQLGEEDRL-VFH 277 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + I +L + + + ++ E + Sbjct: 278 EQKEMFESFS--YAQKRIVSALFNILEAKNRINANVNAQLVFEQLV 321 >UniRef50_C5RNT7 DNA-directed DNA polymerase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNT7_CLOCL Length = 312 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 53/346 (15%), Positives = 117/346 (33%), Gaps = 35/346 (10%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++++G E V L HA++ +G G GK+ +A+ A + Sbjct: 1 MEFSNIIGNEEVKKQFVKNLEAKTFAHAHIIAGEDGSGKSLMAKSAAIKILS-------- 52 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 + I Q + + + V+D R L++ P G KV +I ++ Sbjct: 53 -------KSIYQNYADIIEFKTSKASIGVDDIRVLIEETNKKPFEGDKKVIIIYNAEKIT 105 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 NA LKT+EEPP+ V L + +K+ TI SRC L+ L E+++ L Sbjct: 106 VQGQNAFLKTIEEPPKGVFIFLLCENLEKILDTIKSRCQIHRLRRLSYEEMKLFLSKNYK 165 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 + ++ L ++G ++ + + Sbjct: 166 ----NIKAEEMKPLIAFSDGIPGRVEKYFTDDAFRNIRNITME----------------I 205 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + ++ ++ + W+ +L + + + + + Sbjct: 206 LISITGKEVYELLKYEEQLMKYKNYWQDVLSSFISYVRDALIYKETGDEQYIINIDKIDE 265 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + + + T+ + + + + +M LL+ Sbjct: 266 IKIITDSFSYNKLNKIIDTISYVKDNMQSNVNPSVTFDMMLLKFQE 311 >UniRef50_B1HS71 DNA polymerase III subunit delta' n=2 Tax=Bacillaceae RepID=B1HS71_LYSSC Length = 334 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 28/345 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V Q V+ L R+ HAY+F G +G GK I K + CE PC C Sbjct: 9 FVLQPVVMKQLQTIFDKNRLAHAYIFDGEKGTGKADIMHFFVKLMLCEHPNENVPCETCR 68 Query: 78 NCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 NCR ++ G ++ +I + K++ R+L+ ++ K+Y++ L+ S Sbjct: 69 NCRRVDSGNHPNIHQIYPEGQFIKIDQMRELIGEMKMMGVEEGRKIYVLHHADRLNTASA 128 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N +LK LEEP V +L T Q + TI SRC + + + L+ Sbjct: 129 NMILKFLEEPDGEVTAILITEQMQSILPTIRSRCQHIKFQKMPRHVLLQHLQ------GN 182 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 ++ + + AI+ + L L LVEA+ Sbjct: 183 NISHSMASTVSMMT--------NELEMAISLASDEQFA---------LARKTVLKLVEAI 225 Query: 257 VEANGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + E ++ + E E E L +L I ++ +P A + Sbjct: 226 RQNVHEAMLIVHEEWLPHFKEKSEMEQALDLLLFAYRDIVSIKANPEAA-CTYPDMLPLF 284 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +E+A + +++L R L +R + +E +L Sbjct: 285 KEIALYSTYEQLSKQMESILQARASLQRNMNRTLLMEQLMLNLQE 329 >UniRef50_C0ZHB4 DNA polymerase III delta' subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHB4_BREBN Length = 326 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 23/347 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 T+ Q L++ L R+ HAYL +G +G GK +A LAK L C A Sbjct: 1 MTWTRFSQQPRAQELLSHSLRNERLAHAYLLAGPKGSGKKQMALHLAKSLFCSERE-ADA 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR I+ G D++ I K++ R L + KVY+I+ V + Sbjct: 60 CGACVTCRRIDGGNHPDVLFITPDGASIKIDQIRSLQKEMAMRAVESSRKVYIIEHVDKM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEPP V LL T + TILSRC L E I +L Sbjct: 120 TTQAANSLLKFLEEPPAGVLALLLTEHSHAILPTILSRCQIVQFSPLSAESIAEKLR--- 176 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 E + + +A ++ +A++L+ + + Q V + L+ Sbjct: 177 -AEGVL---AGMAQVASHITTNVEEAMTLSQSESFAQLRNLVIQLVQE-CKQRNSSALLT 231 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 + + + +++ E L ++ L I +Q+ A + + Sbjct: 232 IHDMLQKSD------------KSKEELPLFLDLLILWLRDILYLQVGRHAHL-INSDQQD 278 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ A ++ ++ + + + ++ +E +L+ Sbjct: 279 VLQGQALVWTKAELLRGIDLVMETKNRIERNANAQLALERLVLQFQE 325 >UniRef50_Q4UIH2 Replication factor C subunit (RPC2 homologue) , putative n=3 Tax=Piroplasmida RepID=Q4UIH2_THEAN Length = 336 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 123/301 (40%), Gaps = 38/301 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +DV+ Q ++ + + + H +F G G GKTS A +A+ + Sbjct: 7 VPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPH-MIFHGPPGTGKTSAALAMARQIY 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD------------NV 111 G+ ++E++A+ ++ RD + N Sbjct: 66 GLEGMRER------------------VLELNASDERGIDVVRDRIKTYTRINISNNRVNP 107 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 + +K+ ++DE M++ + AL + +E +F+L K+ I SRC Sbjct: 108 ETNRVMPNYKMIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCS 167 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---ASG 228 FH K ++ +L++I N+E I +P+ L + + G +R ++++ + A Sbjct: 168 VFHFKPIETNSQIDRLKYICNQEGITFDPKFLTTI---SSGDMRKSITILQVILGSTACL 224 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +++ A+ ++ G S+ E + V ++ + G + ++ ++ Sbjct: 225 YNEITENAIYSVSGKPPKRVVESIFE-VCRRPEGDVESVCKQIVHDGWDISSIFQQICEY 283 Query: 289 L 289 + Sbjct: 284 V 284 >UniRef50_B6KMJ0 Replication factor C small subunit, putative n=3 Tax=Toxoplasma gondii RepID=B6KMJ0_TOXGO Length = 357 Score = 179 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 122/322 (37%), Gaps = 38/322 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+ Q L L G + H LF G G GKTS A L + L Sbjct: 31 VPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPH-LLFYGPPGTGKTSAALALVRELF 89 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD--------NVQYAP 115 L+E++A+ ++ R+ + + P Sbjct: 90 GREEAKNR------------------LLELNASDDRGIKVVRERIKQYTKTNIAKGKINP 131 Query: 116 ARGR----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 GR +K+ ++DE M+++ + +AL + +E +F++ ++ I SRC Sbjct: 132 ETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCS 191 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + + + ++ HI + E + A+ L R ++G LR A++L A + D Sbjct: 192 PHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDN 251 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG---- 287 + A+ + G + A + + + ++ ++G + LL EM+ Sbjct: 252 LHEDAILEVAGQPPARIVTDFLRACQAS-PSQASSEVDNVISQGWDVCLLLQEMIRQVVV 310 Query: 288 --LLHRIAMVQLSPAALGNDMA 307 L + ++ + A Sbjct: 311 SPHLKDLQKARVINDIAQKEFA 332 >UniRef50_D2EGM2 Replication factor C n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGM2_9EURY Length = 315 Score = 178 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 125/285 (43%), Gaps = 22/285 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RPQ+F +++GQ+ ++ L I H + SG GVGKT+ A +LAK + Sbjct: 4 WIEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQH-MILSGPPGVGKTTSAVVLAKAVFGP 62 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYL 124 + IE++A+ K+ + + + + P FK+ L Sbjct: 63 DWTQ-------------------NFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIIL 103 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 DE L++ + AL + +EE +F+ + + + SRC + L E + Sbjct: 104 FDEADSLTQEAQQALRRMMEEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVH 163 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 ++ I E + + A+ L + G LR ++L Q++++ ++ +AV G + Sbjct: 164 KFIKRIAESEKLDIDKEAMDALDYVSRGDLRTLVNLM-QSLSNVSKKIDAKAVLQSSGLM 222 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 D + + ++ + + ++ + +E G+ + LL+ + ++ Sbjct: 223 DISKTIDGLKTALSGDFKKSREIFSEIIDNGVNMKELLISIFNVI 267 >UniRef50_A5HXV3 DNA polymerase III, delta' subunit n=17 Tax=Clostridium RepID=A5HXV3_CLOBH Length = 314 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 124/341 (36%), Gaps = 33/341 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E++ + N + G+ HA + G G+GK+ IA+ +A + ++ + Sbjct: 6 IIGHENIKNRIKNSIIKGKFPHASIIVGEDGIGKSIIAKEMAMIILEKSQQRSYAD---- 61 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + + ++D R+L++ + P G KV +I + +++ + N Sbjct: 62 ----------LIEFKPINKKSIGIDDIRNLIEEINKKPIEGNKKVIIIYKSELITEVAQN 111 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A LKT+EEPP+ V +L + +++ TI SRC F L L +E+ + ++ Sbjct: 112 AFLKTIEEPPKGVYIILLCENMEQMLDTIKSRCEIFKLNRLKPCD----IENFIKYKYKD 167 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + + ++G A + +S + + + Sbjct: 168 IKKENINSAIAFSDGIPGKAERFIEDESLKYIRDMSLGILKDSKDLSNYNYL-------- 219 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + N WE +L +L L + + + + ++ ++ Sbjct: 220 -------IKYENFLINYKENWEEILTCILSYLRDSLLFKETGDEELLLNVDKKEYIKHIS 272 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + R +L + + + L++ Sbjct: 273 EKYSYINLDKMVSIINDTRDKLSKNINSTLVFDAMLIKMQE 313 >UniRef50_B9L1A1 DNA polymerase III tau and gamma subunits n=2 Tax=Thermomicrobia (class) RepID=B9L1A1_THERP Length = 350 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 135/353 (38%), Gaps = 29/353 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + LA + G++HHAYL +G G+G+T++A + A+ L CE PCG C Sbjct: 18 IIGHEGAVRTLARAIESGQVHHAYLLAGPAGIGRTTLAFVFAQALLCEGAAEQRPCGTCR 77 Query: 78 NCREIEQGRFVDLIEI------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +C+ I + D+ I + A + ++ R+L ++ P G ++V ++D+ L Sbjct: 78 SCQRIARRVHPDVTRIGLDTGAEEAKQVSIDQVRELRASLSLRPLEGAWRVAIVDDAERL 137 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 SR + +ALLKTLEEPP + +L D Q LP TI SRC L+ L + + LE Sbjct: 138 SREAADALLKTLEEPPPYAVLVLVAEDAQALPETIRSRCQTIVLQPLPISVVARALEVRG 197 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 P LAR G + A L A + V A + + Sbjct: 198 AA------PELANRLARETRGRIALAFRLVSDEAARVQREKRVAEVIAAMTEPLAAIGFA 251 Query: 252 --LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L E V++ + A L + P+A Sbjct: 252 RRLAEQYRRGRRAEVLSSLQLALE--------------LWRDALWLAADPSA-PIVHEDA 296 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + AR L +L R+ ++ ++ Sbjct: 297 RTTLERFARRCGIAGACAGLSATLQALADLEANVQARLALDAAMVTWAEVSRC 349 >UniRef50_B3T4L9 Putative ATPase family associated with various cellular activities (AAA) n=1 Tax=uncultured marine microorganism HF4000_ANIW137I15 RepID=B3T4L9_9ZZZZ Length = 347 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 87/358 (24%), Positives = 143/358 (39%), Gaps = 40/358 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----I 68 A++ GQ+ ++ L S GR+ +YLF G GVGKT+ A A L C+ G Sbjct: 1 MRLAEIKGQDRAVSGLRRDFSTGRMVPSYLFVGPEGVGKTTTAIAFAGLLLCKKGARGYE 60 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVE------------DTRDLLDNVQYAP 115 CGVCD CR++ DL+ + + KV R L+ Q P Sbjct: 61 AEDACGVCDACRKVRAESHPDLMIVRRDGQFIKVGKFEKDRKRGEPPQIRQLIAAAQRKP 120 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G KV ++DE H + + NALLKTLEEPP +L LP T++SRC Sbjct: 121 YEGPVKVLVVDEAHRMKNEAANALLKTLEEPPPGTVIILTAAMLGALPQTVVSRCRVIRF 180 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L+ + ++E + +L+A A+G + AL + + Sbjct: 181 RKLERSWLASEVERLRGR-----SAEEARLVASFADGRMDRAL------------EADPE 223 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 V A +AL L++A +E + ++ G E EALL L L+ + V Sbjct: 224 EVFA-----RRTKALELLDAALEGRTAAALKNVSGVGRPGEEAEALLDVFLSLVRDVRAV 278 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMT 352 + + + +++ ++ R ++ + ++G E Sbjct: 279 RGGARPGFLVHEDLANELARRGSACTNKNLEDLFERARSLRADIRLKNANPQLGWESL 336 >UniRef50_UPI0001BCD908 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCD908 Length = 350 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 136/353 (38%), Gaps = 32/353 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ ++D+ G ++ L + R+ HA LF+G GVGK A +LA+ L C G A Sbjct: 21 PKDWSDIRGHAEIIRRLRFLAAAERLPHALLFTGAEGVGKRRTAHVLARTLLCAKGGDA- 79 Query: 72 PCGVCDNCREIEQGRFVDLI------EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR +E G D A+ + + R++L AP R ++ LI Sbjct: 80 PCGHCDSCRTMEAGVHPDYFEAVPEARGKGAAAIRTDAVREILVAASGAPISARRRIILI 139 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D+ ++ + N LLKTLEEP V F+L T+ + + TI SR ++ AL ++ Sbjct: 140 DDADRMNETAANRLLKTLEEPSGEVIFILVTSACEAILPTIRSRAVRIAFGALPRTELET 199 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + +A A+GSL A +L + ++ D + V A L L Sbjct: 200 ALAERGTDNG--------ETIAALADGSLGRAYALAAEGLSLRDDALR---VLAELPALS 248 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + E + E A L + + ++ A Sbjct: 249 MEDIWRYAEKIGAYTH--------------EERRAWLGYFQTAMRDLLLLLEDGTASQLF 294 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + L + I + + + E L+RA Sbjct: 295 HPDRRADLGVLLAHMLRPQIFALLDESRKLLRRFDANVNPALQAEAFLIRARQ 347 >UniRef50_C0DZN9 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0DZN9_9CORY Length = 925 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 109/528 (20%), Positives = 195/528 (36%), Gaps = 21/528 (3%) Query: 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 D+ E+DAAS V+D R+L D +APA R+++++IDE HM++ NALLK +EEPP Sbjct: 12 DVTELDAASHNGVDDMRELRDRAMFAPAESRYRIFIIDEAHMITNQGSNALLKIVEEPPA 71 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 H+ F+ ATT+P+K+ TI SR + + L + +R LEH + E E L+ R Sbjct: 72 HLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQAMRGLLEHTVAAEDAIIEESVYPLVIR 131 Query: 209 AAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 A GS RD LS+ DQ +A +G ++ Q +LG DD + + A+ + + Sbjct: 132 AGGGSPRDTLSILDQLLAGTGPDGLTYQYARMLLGVTDDTLIDATIAALATNDRASLFTT 191 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA----LGNDMAAIELRMRELARTIPPT 323 +++ G+ ++L L + ++Q P A L + + + + Sbjct: 192 VDDVIEAGLSPRKFSEDLLDRLRDLMLLQAVPDAVNLGLVDAPTDRGEILLQQTQEFDSQ 251 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAV 383 I L G L A R+ +E+ + P APV + Sbjct: 252 RIPRIAGILNDGLSSLKGATSPRLLLEILCAKM-----------LIEPGGQAAPVPALSA 300 Query: 384 MTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVN 443 + P P S P P + AR +++ + +++P + Sbjct: 301 PSARPTPAAPASTPSSKYERPSQRRAREAQEARNVVEKPEVVEAPVETKPQEPEESPETR 360 Query: 444 NAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEH 503 + + ++ + +A +K + A + + + + L Sbjct: 361 STPPQPASTSVHVQPIDAIKNAWDKIRSTVSKTNAVAGILLTGVQPLGIADETLVLGHN- 419 Query: 504 EKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVA--LNAWKEESDNAVCLHLRSSQR 561 T LA++L A +A + L V ++ Q Sbjct: 420 --TGALASRLNAPEHNATIQSAVLETTGLELEVRCEVGTNPKAFGFETDSPKPVWNPEQD 477 Query: 562 HLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEE 609 A + + + + PA + E Sbjct: 478 AGEAGSDGDAQETATQETESANPVVVEQVEPEPAPESTQPEGVVEPAE 525 >UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4_GEOSL Length = 440 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 123/347 (35%), Gaps = 57/347 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + VGQEH+L L + + + +F G G GKT++AR++A Sbjct: 17 PLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLT-SLIFWGPPGSGKTTLARVIANA 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGRF 120 +A + +++ R+++ + RGR Sbjct: 76 -------------------------TKSHFIFFSAILSGIKEIREIVKEAEEEKKYRGRN 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+H ++ +A L +E + ++ +LSRC L L Sbjct: 111 TILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQ 170 Query: 181 EQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 E + L L + +A + AL +A + G R AL+ + A +G++ Sbjct: 171 ENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRI 230 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 ++V + G + + +++M ++ + + + G + +L Sbjct: 231 DLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFIL 290 Query: 283 VEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELARTI 320 M+ L + + + + A T Sbjct: 291 RRMVILASEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATY 337 >UniRef50_B4DM41 cDNA FLJ60688, highly similar to Replication factor C subunit 4 n=2 Tax=Coelomata RepID=B4DM41_HUMAN Length = 303 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 29/256 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I +E++ + L + +EG LR A++ A +G +++ Sbjct: 199 FKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEIT 258 Query: 234 TQAVSAMLGTLDDDQA 249 + ++ + G D Sbjct: 259 EKVITDIAGVRVLDIL 274 >UniRef50_C8QYD5 DNA polymerase III, delta prime subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYD5_9DELT Length = 352 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 138/362 (38%), Gaps = 33/362 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE--TGITA 70 TF+ ++ Q+ L + G++ HAYLF G GVGK + AR LA LNC+ Sbjct: 3 TTFSQIIEQQQAKEILRRAVGGGKLAHAYLFRGPAGVGKKTAARALAAALNCQGDRPEPL 62 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +CR+ D +EI K++ R+L +Q+ P +V ++ EVH Sbjct: 63 EACGRCPSCRKFASANHPDFLEIMPEGAGIKIQQVRELKKALQFPPLEAGRRVVVLGEVH 122 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + R + N+LLKTLEEPP LL + + TILSRC L VE + L Sbjct: 123 TMRREAANSLLKTLEEPPADTILLLTGDEAGGILPTILSRCQIIPFYPLPVETLARTLYQ 182 Query: 190 ILNEEHIAHEPRA----------LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + E LA AEGSL A L +Q + QV + + Sbjct: 183 EATDHRQELEMATDWSSDPVFQNCLTLATVAEGSLGRARQLQEQELLPLRRQV----LES 238 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL-- 297 +L + A V+ A E L + H +A++Q Sbjct: 239 LLNLQPEAPAA----------PAVVLYWAERCAQLKEELPDFLDLLTSCYHDLALLQTLS 288 Query: 298 ----SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + + + A P ++ Q L + L +R + E+ Sbjct: 289 PQDPANRHNPIINRDLLPLLSAAAAHRGPATLESCRQHLRRAQGRLRRNCNRTLVCEVLF 348 Query: 354 LR 355 Sbjct: 349 FD 350 >UniRef50_A0CAF3 Chromosome undetermined scaffold_161, whole genome shotgun sequence n=2 Tax=Oligohymenophorea RepID=A0CAF3_PARTE Length = 340 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 55/349 (15%), Positives = 124/349 (35%), Gaps = 44/349 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T +V+ E ++ + R+ + L G G GKTS LAK + Sbjct: 15 IPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPN-LLLYGPPGTGKTSTIIALAKQIY 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR---- 119 + ++E++A+ + R+ + + + Sbjct: 74 -------------------QNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDK 114 Query: 120 ---FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 K+ ++DE ++ + AL + +E+ + +F ++ I SRC +F K Sbjct: 115 NTSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFK 174 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL----TDQAIASGDGQV 232 + ++ ++++I E I +A++ + G +R +++ + S + Sbjct: 175 QISLDVASSRIKYICENESIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVI 234 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANG--ERVMALINEAAARGIEWEALLVEMLGLLH 290 ++Q V G D ++E ++ + + + + +GI + LL E+ L Sbjct: 235 NSQYVYQFTGMAHPDLIKQIMEYLMNQSEIQKTYLKIKTILNEQGISLQLLLTELSTQLL 294 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPP-----TDIQLYYQTLLI 334 + ++ RM EL + + Sbjct: 295 GLNVLNDKQKCNVI------ERMAELEYRLSICCNDQVQLLSLIGIFHE 337 >UniRef50_Q7MVV1 DNA polymerase III, delta prime subunit, putative n=2 Tax=Porphyromonas gingivalis RepID=Q7MVV1_PORGI Length = 416 Score = 177 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 142/385 (36%), Gaps = 63/385 (16%) Query: 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 RP F DV G E + T L +I HA LF+G G G +A A+ LNC+ Sbjct: 33 HRPMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQMPTD 92 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASRTK---------VEDTRDLL------------ 108 CG C +C + + DL + + R++L Sbjct: 93 TDACGHCPSCVKYDALAHPDLFFVYPVVNASSSPAPSDDYIRQWREMLGSESYFTPADWL 152 Query: 109 ---------------------DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + + ++V +I + ++ N LLK +EEPP Sbjct: 153 EYIKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPP 212 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 EH F + +++P K+ TI SR +++ L +I L + + +A Sbjct: 213 EHTLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSR-----NNQGNTADIIRIA 267 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 AEG+ R A+ L A D V ++G ++ ++++ + ++ + Sbjct: 268 HLAEGNYRRAMDLYRGEWADRDNFV-------LMG--------RMMGSIIKGDPSKMRPV 312 Query: 268 INEAAARG-IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 +E AA G + L L L + + ++ A L E + L+ I +I+ Sbjct: 313 ADELAALGRVSQIGFLTYCLRLFRELYISRVGVAKLNYLSPEEESFVDMLSGGITGQNIR 372 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEM 351 + + + + + + RM Sbjct: 373 PVMEEVELAIRHIRQNGNGRMIFFD 397 >UniRef50_Q8SSI2 DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSI2_ENCCU Length = 305 Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 29/290 (10%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q L K+RP + +VVG V+++L + S GRI + LF G G GKT+ R +A L Sbjct: 2 HQQLTEKYRPGSLLEVVGNREVVSSLQSISSAGRIPN-MLFYGPPGTGKTTSIRAIANNL 60 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 + ++E++A+ + R+ + + K+ Sbjct: 61 PRTS-----------------------VLELNASDERGIATVRETIKEFA-STYSKTMKL 96 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE M+SR + NAL + +E+ + +F L +K+ ILSRC +F + + Sbjct: 97 VILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE 156 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 +++E I E I + P ++ ++R + G +R A++ Q I++ GQV V G Sbjct: 157 --NRIEEICKRESIKYTPEGIKAVSRISMGDMRKAVNDI-QGISASLGQVDESNVRRFNG 213 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHR 291 L + + + ++ +ALL + L+ Sbjct: 214 IAPSSVYEELFRNLGSMGMPELRVELERLRYEYSMDCDALLGNLGELVRE 263 >UniRef50_C2ECG6 DNA polymerase III subunit delta n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ECG6_9LACO Length = 330 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 30/353 (8%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 QT ++ Q + + G++ HAYLF+G G GK+ +A +A+ + C P Sbjct: 3 QTITEL--QPRLTEHFMKLIEAGKLSHAYLFAGPAGTGKSELALFVAQIVFCTDKQAGMP 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C CR I F D++E+ KV+ R L + G K+++I + + Sbjct: 61 CGRCSECRRIADHGFPDVVEVAPDGASIKVDQIRFLKAEFSKSGVEGTKKIFIISDAEKM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + N+LLK LEEP V L T + + TI+SRC +F L+AL +++ +L+ Sbjct: 121 TASAANSLLKFLEEPSGDVCAFLLTENANLILPTIISRCQEFELQALGFDELSEKLQQA- 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 LL + SL A+ ++S A + Sbjct: 180 -----GISKDKASLLLGLTD-SLEIAI------------ELSKDDGFAAM----TADVWE 217 Query: 252 LVEAMVEANGERVMALINEAAARGIE---WEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + ++ + + + + + LL ++ L+ + +++ A Sbjct: 218 WFKLIMTNDLRAFVNVTTHLKQYFSDRSRQDMLLDLIVLLVRDVMLLKF-EEHGRTSFAM 276 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +R + I + +L RK + +E L+ ++ + Sbjct: 277 HHDELRAFSEKISTQRACQATELVLDSRKLQAINVSFQNILETLTLKLVSCYH 329 >UniRef50_A9A090 DNA polymerase III, delta prime subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A090_DESOH Length = 332 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 131/342 (38%), Gaps = 38/342 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-------- 72 QE L LA L+ G I HA+LF+G G+GK S A A NC + P Sbjct: 3 QEKPLRTLAGILARGDIPHAFLFTGIDGIGKRSAAMGFAMACNCLAAVQEKPLPVPVPGD 62 Query: 73 -----CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C CR I G D+I I K+ R+L++ V + P + + +I Sbjct: 63 SGLPFCGTCRICRAIAAGTHPDVITIAPEGNAIKIGRIRELIEKVAFRPHEAKMRAVIIS 122 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 + ++ + NALLK+LEEPP F L L T++SRC + ++I Sbjct: 123 DAWAMNPEAANALLKSLEEPPPQTLFFLTAEHASDLLPTVVSRCRHIRFAPVSADRIAAF 182 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 L+ H + +A + A + GS+ AL+LTD + + ++ + Sbjct: 183 LQQ-----HHGVDEKAARSAALMSGGSVARALALTDVPLGAWRQWLAAELA--------- 228 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 A+ V+A + + L + L+ + + P + N Sbjct: 229 --------ALPSRPVPLVLAFAEKLQKNKDQIGQWLGMIQTCLYDAVVWKYQPGRIMNI- 279 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 + + L+ + ++ K L + R+ Sbjct: 280 -DMTDAVAALSEQESIASLGRKIDAVVAMEKALNRNLNPRLA 320 >UniRef50_UPI0001925630 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925630 Length = 322 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 21/219 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP D++ + ++ + +S G++ H LF G G GKTS +AK L Sbjct: 123 WVEKYRPACLDDLISHKDIIDTIQKFISEGKLPH-LLFYGPPGTGKTSTILAVAKQLYSP 181 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPAR-GRFKVY 123 + ++E++A+ + R+ +L +FK+ Sbjct: 182 ------------------KEFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSKFKLV 223 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE ++ + NAL + +E+ E+ +F L + I SRC +F LD +Q+ Sbjct: 224 ILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQV 283 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 +L+H++ EE++ ++ L R +G +R +L++ Sbjct: 284 SLRLKHVIQEENVTVTEDGMKSLIRLGKGDMRRSLNILQ 322 >UniRef50_C4V4M8 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V4M8_9FIRM Length = 346 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 139/349 (39%), Gaps = 35/349 (10%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P ++D+ G ++ L + G + HA +F+G G+GK AR+LA+ L C Sbjct: 18 PHDWSDIRGHAEIIRCLRRLAADGHLPHALIFTGAAGIGKRRTARVLARTLLC-AAEGNA 76 Query: 72 PCGVCDNCREIEQGRFVDLIEIDA------ASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 PCG CD+CR G D E+ A+ + + RD+L +P R ++ LI Sbjct: 77 PCGRCDDCRMTAAGVHPDYFEVIPEARGKGAAMIRADAVRDILIAASESPQRAGRRIILI 136 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 D VH ++ + N LLKTLEEPP V FLL T + TI SR ++ L +I Sbjct: 137 DGVHSMNEVAANRLLKTLEEPPATVLFLLVTDAWDAVLPTIRSRAVRIAFGPLPRAEIAA 196 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 +L+ + +A A+GSL A +L A G Sbjct: 197 ELQRRGIAH--------AETIAALADGSLGRAETL------------------AAEGLSL 230 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGN 304 D ALS + + E + + R + A L + L + +++ + AA Sbjct: 231 RDDALSFLTILETLRIEDIWKHAEQLGGRSYDERAAWLGYLQMALRDLLVLRENAAAEL- 289 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + EL +P + L + + + + + E Sbjct: 290 YHVDRRAELTELLPAMPRQRVLLLMEEAGVLLRRFGANVNPALQAEAFF 338 >UniRef50_C4FZV3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZV3_ABIDE Length = 330 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 139/343 (40%), Gaps = 27/343 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 +++G+E ++ + S HAY+F G +G+GK IA+ AK + T Sbjct: 9 NILGRESLVEYMKTAASKEEFSHAYIFEGEKGMGKLFIAKEFAKMILSCGKETDE--ERQ 66 Query: 77 DNCREIEQGRFVDLIEI--DAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSR 133 ++++ G D+I I D + VE+ R L+ P G++KVY++ E ++ Sbjct: 67 IVYKQVDNGNSPDIIYIEPDKPTTISVEEIRTKLVGTSDIFPY-GKYKVYIVKEAEKMNE 125 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLKT+EEPPE+V +L + + +L TI SRC+ +K + I+ L Sbjct: 126 QAQNALLKTIEEPPEYVIIILLSANKNRLLPTIRSRCVTLDIKPIAANIIKEYLI----- 180 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 E+ + A+ + G++ A+ V V +L LD + + Sbjct: 181 ENYGVVDYVADMAAKFSAGNVGRAVRYACDEDFLEMKNV----VVKILRNLDKETITEEI 236 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 +++ E + + M+ + +++ + A + Sbjct: 237 ASII------------NLEGYKKEIKDCIELMILWFRDLLVLKTTGDANKILFREEYRYL 284 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 E + I+ +++ +K L +E+ L+ Sbjct: 285 NEQIAKRNYSSIERALESMEKTKKRLDANVKFDTAIEIMLMYM 327 >UniRef50_Q7QBM4 AGAP003093-PA n=11 Tax=Coelomata RepID=Q7QBM4_ANOGA Length = 361 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 113/297 (38%), Gaps = 31/297 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP++ DVV Q V+ L LS + + L G G GKTS A+ L Sbjct: 36 VPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPN-LLLYGPPGTGKTSTILAAARQLF 94 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 + ++E++A+ + R+ + A G Sbjct: 95 GDMFKE-------------------RILELNASDDRGIAVIRNKVKTFAQLTASGTRTDG 135 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ I SRC +F Sbjct: 136 KPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFR 195 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQV 232 K L E+I +L +I ++E + + + + + G LR A++ + ++ Sbjct: 196 FKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSCHRLKGAQARI 255 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 Q + M G + + + +N ++ + + L ++ + Sbjct: 256 ERQDILEMSGVVPERYLEEFISVCKSSNYSKLEEYVQNLSYDAYSVGQLFEQLTEYI 312 >UniRef50_C5S6L9 DNA polymerase III, delta prime subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6L9_CHRVI Length = 359 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 127/347 (36%), Gaps = 34/347 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCR 80 + + + L + R+ H L SG GVGK ++AR LA+ L C+T CG C +CR Sbjct: 29 DAIWSRLQAARAADRLAHGLLISGPNGVGKRALARALAQSLLCQTPSAQGLACGQCADCR 88 Query: 81 EIEQGRFVDLIEIDA-----ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 + G DLIE+ + ++ R + P+R FKV LID L++ + Sbjct: 89 LLAAGSHPDLIEVGPDPESKSGEIPIDAVRLFAERESLTPSRALFKVVLIDPADRLNQAA 148 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKTLEEP H L +LP TI SRCL + D Q L Sbjct: 149 ANALLKTLEEPTGHTVLCLIGERIGRLPATIRSRCLLIPVPIPDEAQALSWLASRA---- 204 Query: 196 IAHEPRALQLLARAAEGSLRDALSL-TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 L R A G+ AL+ D A GQ + G D Sbjct: 205 ---PRADWPLRLRLAHGAPLRALAEAADSARLEQRGQCLDGLLEIARGRGDPVTIAGRWN 261 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + +L + G++ + + + D + + Sbjct: 262 EIGAG--------------------RILDWLAGIMGDLLRLGVCATPPRLDHPDRQDDLA 301 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 LA+ + P + + +L R ++++ +E L Sbjct: 302 ALAQRLDPAAAHRFLKRILETRALGESNLNQQLLLESLALDWARIGQ 348 >UniRef50_Q8QKY2 EsV-1-87 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QKY2_ESV1 Length = 324 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 132/343 (38%), Gaps = 29/343 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLA 59 M+ Q K+RP F++VVG + ++ L+N + I H L G G GKT +L Sbjct: 1 MTAQPWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPH-LLICGPSGCGKTVCVDIL- 58 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-----A 114 C I + R ++ + + +++ R + N Sbjct: 59 -------------CNT-----MIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTE 100 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 P K+ ++DE ++ +F AL + ++ +F++ + K+ I SRC Sbjct: 101 PTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILR 160 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 +D Q+R ++ + + + ++P + LA A+G +R A++ ++ G ++++ Sbjct: 161 FSKVDDAQLRLRIRQVCDMAGVEYDPGGIGALACVADGDVRSAINSLASIVS-GFRRLTS 219 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGE-RVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + V + + + +V+ + G + G E + + ++ Sbjct: 220 ENVYRTCRSPQPAKIVDIVDLLRNKGGYVEACRKLRGLCGEGGEGYSPTDILSSFFKALS 279 Query: 294 MVQLSPAALGNDMAAI-ELRMRELARTIPPTDIQLYYQTLLIG 335 ++ + + I ++ R L+ + ++ Sbjct: 280 VIDVRESQRIEIAKVIGLVQNRVLSGASSYLQLAAMLWSIAET 322 >UniRef50_Q5WLY0 DNA polymerase III delta' subunit HolB n=3 Tax=Bacillus RepID=Q5WLY0_BACSK Length = 332 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 121/339 (35%), Gaps = 22/339 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L + R+ HAYLF G G GK +A L+AK C+ A PC C +C Sbjct: 14 QPQVVPMLVASIQKNRLAHAYLFEGEAGSGKHEVALLMAKRFFCKEHNGAEPCHACSDCL 73 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G D+ ++ K E L Y KVY++ V ++ + N+L Sbjct: 74 RIEHGNHPDVHQVAPDGQSIKKEQIEYLQKEFTYRGMESAAKVYIVSHVDKMTASAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP +L T + + TI SR Q QI +L EE+ A Sbjct: 134 LKFLEEPQGQTLAILLTENGASILPTIRSRAQQMRFLPPSQTQIASKLVAEGIEENQALF 193 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL G+ A +L + + V Q + + D Sbjct: 194 LAALT-------GNKAYAKALAEGDWSFQARTVVLQLMHELFTRPDLAAI---------- 236 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + ++ E L ML L + +Q A + + ELA + Sbjct: 237 ---TLADKWIPLMKERLQQEMGLEMMLLWLRDLLYIQAGKQDKL-VYADNKSKFDELALS 292 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 I+ +L ++ L ++ +E L Sbjct: 293 TSQHTIRAAMSHVLEAKRHLSANVSIQLVMERLLFTIQE 331 >UniRef50_Q64AI6 Replication factor C subunit n=1 Tax=uncultured archaeon GZfos31B6 RepID=Q64AI6_9ARCH Length = 416 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 112/301 (37%), Gaps = 18/301 (5%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + K+RP TF D+VG EH++ L + + + H + G + GK S +LA+ Sbjct: 72 MEQVIWTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPH-LVLYGAKNTGKMSAVFVLAR 130 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL------------ 108 L E N ++G+ + + A +D + + Sbjct: 131 ALYGEQWENNLAIFDASNF--FDRGKKYLVSDPRFARLIGTDDPKKIQKTVISVFKQVIN 188 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 + A F++ ID LS + +AL + +E+ +F+L+TT +L + S Sbjct: 189 EYAGMAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRS 248 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 R L + + I E +Q + A+G L A+ + Q + Sbjct: 249 RGLNLFFDRASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVL-QIASMK 307 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA--ARGIEWEALLVEML 286 +++ V + + L L+ A + + + I++ G + L ++ Sbjct: 308 RREITANTVYEVDLERIPEGILELLHASLAGDFKTARKRIDDLLMEESGADITHRLRRVI 367 Query: 287 G 287 Sbjct: 368 E 368 >UniRef50_B7IZB6 DNA polymerase III subunit delta' n=4 Tax=Bacillus cereus group RepID=B7IZB6_BACC2 Length = 326 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 115/347 (33%), Gaps = 28/347 (8%) Query: 13 QTFADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 T+ ++ Q V L N + + HAY++ G +G+GK +A L AK L C G + Sbjct: 1 MTWNELQDVQPKVARILQNSIRKEMVAHAYIYEGNKGIGKYQVALLYAKTLLCNNGSNSE 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC C NC I+ G D+I I K E +L YA K+Y+I+ Sbjct: 61 PCHACKNCTRIDTGNHPDIIYIKPDGASIKKEQIEELQKEFSYASFESGKKIYIIENAEK 120 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ ++ N+LLK LEEP +L T L TI+SRC + ++++ L Sbjct: 121 MTTNAANSLLKFLEEPESDCIAILLTERSNALLSTIISRCQLIRFAPISPKKVQEALT-- 178 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 E + A + L A ++++ D Sbjct: 179 ---EQLIFGEEA--KILSKLTNDLEQARKISEELTLG----------------PKLDLIQ 217 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 ++ + ++EA A ++ L+ I Sbjct: 218 EFIQKCNTLKVYALKKELSEAFAGKEGTLIFYHIVMLWFEDFLNYHLNRRNDLVFNEEIL 277 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + I + + + + + + Sbjct: 278 D---TEVKKYKLNQILHLIKCAQKYQGRVHNNLTFTTLFDGFVAESQ 321 >UniRef50_A9A308 Replication factor C n=2 Tax=Thaumarchaeota RepID=A9A308_NITMS Length = 316 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 126/337 (37%), Gaps = 32/337 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP ++VV Q ++ +L + + H LFSG+ GVGKT+ A +++ + Sbjct: 7 WVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPH-LLFSGSAGVGKTTTALCISRQILG 65 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG--RFKV 122 + +E++A+ + R+ + FK+ Sbjct: 66 DYAKD-------------------YTLELNASDERGIGMVREKVKKFSRYAGMADVPFKI 106 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++DE ++ + AL + +E+ + +F+L + K+ I SRC F A+ E Sbjct: 107 IILDEADEMTSDAQTALRRIIEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVPEED 166 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + +LE I +E + + + L+ + +EG LR A++L + G +S V A G Sbjct: 167 VIKRLEEIAKKEKVKADKKGLKAIYDYSEGDLRHAINLMQATASLGS--ISEDNVKASAG 224 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAA 301 +++ + + E G+ L + A+ + Sbjct: 225 LTKTTDVDEVLKIALSGKVPEAREKMIELIKVYGMSESDFLKYL-----NSAVFKSKHDK 279 Query: 302 LGNDMAAIEL-RMRELARTIPPTDIQLYYQTLLIGRK 337 L + + I R L + + L Sbjct: 280 LSDILEIIAKYDYRILVGSNSEIQLSAMLAELAKVEN 316 >UniRef50_D1JX33 DNA polymerase III, delta' subunit n=7 Tax=Bacteroides RepID=D1JX33_9BACE Length = 369 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 134/384 (34%), Gaps = 59/384 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F DV+GQE L +S GRI HA LF G GVGK +A A+ L+C Sbjct: 1 MFFRDVIGQEEAKYRLIQEVSEGRIPHAQLFCGPEGVGKFPLALAYARYLSCTNRSDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTK-----VEDTR---------------------- 105 CGVC +C + + D+ + + + + R Sbjct: 61 CGVCPSCVKFNKLVHPDVHFVFPVVKNGRSDDYIVEWRKLVLNNPYFTINHWLNEINAEN 120 Query: 106 -----------DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 +++ + + G FK+ L+ + + N LLK LEEPPE FLL Sbjct: 121 AQAVIYTKESDEIMKKLSLKSSEGGFKITLLWLPEKMQQACANKLLKLLEEPPEKTIFLL 180 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + P + TILSR +F+L+ ++ E + L+ + +A A G+ Sbjct: 181 VSEAPDLILQTILSRTQRFNLRKIEEECMAEALQS-----KYGVQQATSISIAHLANGNF 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A + + + Q+ + +SL+ + + + A Sbjct: 236 IKA---LETIHLNEENQLFFEL------------FVSLMRLSYQRKIREMKLWSEQVAGM 280 Query: 275 GIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 G E + L ++ + L L + A + ++ L Sbjct: 281 GRERQKNFLEYCQRMIRENFIYNLHRKELTYMTLEEQNFATRFAPFVNERNVMGIMDELS 340 Query: 334 IGRKELPYAPDRRMGVEMTLLRAL 357 +K + + +M L+ + Sbjct: 341 EAQKHIEQNVNAKMVFFDFSLKMI 364 >UniRef50_A3HYF2 Putative DNA polymerase III delta prime subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HYF2_9SPHI Length = 379 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 134/400 (33%), Gaps = 70/400 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G L + + + HA LF G G +A L+ L C+ Sbjct: 1 MRFADIPGLPETKKNLISAVKNNHLAHALLFHGPEGSANLPMALALSTYLFCQNPGEEDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS----------------------------------- 97 CG C C+ +E+ DL + Sbjct: 61 CGECSYCKRMEKLIVPDLNFAFPSISKEKKDSESEDEKNHELANFRNFVLENPYGNIHDF 120 Query: 98 -----------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 + ++ ++ G +K+ LI V L + N+LLK +EEP Sbjct: 121 IYYSGFEKKQLNISKNAAKRIIQSLSLMSFEGGYKIMLIWGVEYLHPSAANSLLKIIEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 P F+L T+ P +L TILSR + ++ E+I L + E + + + + + Sbjct: 181 PAKTVFMLITSQPDQLLTTILSRTQKVLIRGFSDEEIVSHL---VGSE--SCDQKTAEQV 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 + A+G+LR+A L ++ D Q+S L + + + Sbjct: 236 SMLADGNLREANRLINKV---EDEQISK--------------VRRLFLSCYTKKFKDIFN 278 Query: 267 LINEAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTD 324 +E E + ++ L +L + + L + + ++++T + Sbjct: 279 FADEFQKYDKEAQKSFMLSGLNVLREVMLKNADLNELLRTTGSDREFIDKISKTVLDENH 338 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + Y T L + ++ ++ L Sbjct: 339 VMKLYNTFNQAHYHLERNGNAKLIFADLSMKVLKAMMSRT 378 >UniRef50_C5KYK3 Replication factor C subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KYK3_9ALVE Length = 277 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 31/255 (12%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 K+RP ++ Q V+ AL + G + H LF G G GKTS LA+ L Sbjct: 22 AVPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPH-LLFYGPPGNGKTSAILALAREL 80 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---- 118 ++E++A+ ++ RD + R Sbjct: 81 FGPELWRDR------------------VLELNASDERGIDVIRDKVKKFAQISVRAVAPG 122 Query: 119 ------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 FK+ ++DE +++ + AL + +E + +F + ++ + SRC + Sbjct: 123 SGKSAPPFKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAK 182 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDG 230 F + L E R +LE+I N E + A++ L + G LR A++ S D Sbjct: 183 FRFEPLSDESQRGRLEYIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSCLSDDE 242 Query: 231 QVSTQAVSAMLGTLD 245 ++ + + G D Sbjct: 243 AITVEEILEASGFAD 257 >UniRef50_B0MY72 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY72_9BACT Length = 381 Score = 172 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 126/388 (32%), Gaps = 66/388 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQ + L G+ GR+ HA LF+G G G +A + LNC Sbjct: 1 MRFSEVIGQRELKRHLVRGVDAGRVSHAQLFTGRPGAGALPLALAYVQYLNCTNRRDGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVED------------TRD-------------- 106 CG C NCR+I DL + ++ + R Sbjct: 61 CGECPNCRQIAGLAHPDLHFVFPVNKQGKKSGEAVLSDDFMPLWRQVVSERNGYFSPQEW 120 Query: 107 ---------------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 ++ + + ++K ++ ++ + N +LK LEE Sbjct: 121 YDRLDLGRTLKGAISAREADGIIRKLSFKSFAAKYKCVIVWLPETMNEEAANKILKILEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 P E F+L + P L TILSR + + L E++R +LE +P ++ Sbjct: 181 PWEKTLFVLVSERPDLLLPTILSRTQEVVVPRLTDEEVRAELERRGER-----DPEKIRT 235 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 R A G L + + ++ D + SL+ +M Sbjct: 236 FTRLAAGD----LIELEHLLRGEGDELRKD---------DFEFFCSLMRLSYNDKHLELM 282 Query: 266 ALINEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 A E A + A L + LL ++ + R A I + Sbjct: 283 AWAEEVAQLSREQQRAFLTNAVRLLRESYLLHAGLGEISCLWGEEAKFCRNFAPFIGNQN 342 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMT 352 I+ ++ + + Sbjct: 343 IESLVAEAESAMAQIRQNGNPTIVFTHF 370 >UniRef50_A9VE93 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VE93_MONBE Length = 331 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 70/343 (20%), Positives = 131/343 (38%), Gaps = 51/343 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP + ++ ++ + ++ R+ H L G G GKTS + AK L Sbjct: 22 LPWVEKYRPSSLDQLISHTEIINTIQRFINEDRLPH-LLLYGPPGTGKTSTIKACAKQLY 80 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 R +L+ FK+ Sbjct: 81 ------------------------------------GKGYKRMVLE---VRLVTSGFKLV 101 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE +S + AL + +E+ +H +F L K+ + SRC +F L +++ Sbjct: 102 ILDEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDEL 161 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD---------QAIASGDGQVST 234 + Q++ ++ E++ P + L R A+G +R AL++ + A G + Sbjct: 162 KSQVQRVIKAENLTVTPEGIDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGDIDA 221 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGLLHRIA 293 +AV T D S+V M+E LI+E +G+ + +L E+ +H I Sbjct: 222 RAVYTCTATPQPDDIQSIVSWMLEKPVAEAYKLISEVKTEQGLALQDILKEVHRFMHNID 281 Query: 294 MVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIG 335 L A IE R+ + A ++ +D+ +Q + Sbjct: 282 FPTDCKILLLERFADIEHRLADGATESLQLSDMIATFQRVREL 324 >UniRef50_D2RIX9 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIX9_ACIFE Length = 356 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 133/362 (36%), Gaps = 36/362 (9%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + ++G E L N L+ R + LF G G+GK +AR A+ C PC Sbjct: 13 WESIIGHETNKIFLKNMLTGERQTPSLLFCGPEGIGKKKMARAFARSFLCLEDPLV-PC- 70 Query: 75 VCDNCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +C+ ++ G D I+++ + V+ L + P FKV LIDE H + Sbjct: 71 HCRSCQAMDNGSHQDFIQVEPGGKSRTIGVDAIHQLAASAALGPVLSPFKVCLIDEAHTM 130 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP++ F+L D +KL TI SR ++ L +E LE I Sbjct: 131 REEAQNSLLKLLEEPPDYWLFILVADDREKLLPTIRSRVMELRFDPLSMEDTERVLETIR 190 Query: 192 NEEHIAHE--------------PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +E+ E L +LAR A GS AL + ++ Sbjct: 191 LQENDRPESLKDAELSQAEARWREQLPILARLAGGSAGKALEWFRLDALTLREEI----- 245 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++ + L + + E L+ +L L ++ Sbjct: 246 LDLVEQAGREDILVYADGLPWM-----------LKNDRQESLVLMELLLLLFRDGLIL-E 293 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + R+ ++ + R+ + RRM VE L Sbjct: 294 TGLSQPLYNEDLRQRLAMCFAGWTEGMLRKGLELEEKCRRAIASFVTRRMAVEALALEIH 353 Query: 358 AF 359 Sbjct: 354 QM 355 >UniRef50_A8B3E2 Replication factor C, subunit 3 n=2 Tax=Giardia intestinalis RepID=A8B3E2_GIALA Length = 321 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 105/260 (40%), Gaps = 29/260 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VV E ++ A+ + GR+ H +F G G GKT++ + L L Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPH-MIFYGKPGTGKTTLIKALMNELF 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--------QYAP 115 + ++E++A+ + V+ R + Q + Sbjct: 61 GDAV-------------------STHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSS 101 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 + +FK+ ++DE +S + +L + +E +H +F L P+KL ILSRC F Sbjct: 102 SATKFKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRF 161 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV-ST 234 + E LE I + E + P AL + +G LR A+++ + ++ + Sbjct: 162 LPVPRESCLLMLEKIADAEGMQMAPGALAAIHAVTDGDLRQAINVLQSLHLMTEKELATA 221 Query: 235 QAVSAMLGTLDDDQALSLVE 254 V ++ L+ Sbjct: 222 DDVYKLVAKPHPALGRELLR 241 >UniRef50_C0QI37 HolB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI37_DESAH Length = 345 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 19/339 (5%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PCGVCDNCREIE 83 L L+ +I +A LF G +GK A A+ LNC+ C C +C++I Sbjct: 21 QDLVALLATLKIPNALLFVGNPDLGKVETALAFARALNCQGEKRNDGLACDQCRSCKKIL 80 Query: 84 QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D+I + K+ R++ ++ P +F++ LI ++ + NALLK Sbjct: 81 SSMHPDIICVAPVKERIKISQIREIYGQIKAKPHEAKFRMVLIQGAEAMNPEASNALLKI 140 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPPE F+L T L TILSRC Q +D +I L + Sbjct: 141 LEEPPERTFFILTTERTDGLLPTILSRCRQVTFSPMDQGKIEQILVR-----DHGIDTTT 195 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + A ++GSL+ AL G V + + ++ + AN Sbjct: 196 AGIAASWSQGSLQKALKF--------TGIVKSDDTTD-WPERRRWMITAISTLIRGANPG 246 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + L + L + + + + + + + + E I Sbjct: 247 VALLLAEKINQNPELLGGTLAILESFFRDMVVFKYNTEK--IINSDFQTLLTETDSGIST 304 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + L K++ R+ +E L + + Sbjct: 305 QRVLSWITELHHVEKKIKANAGIRLTLEAFLFKLIPARQ 343 >UniRef50_Q29RS9 Replication factor C (Activator 1) 4, 37kDa n=6 Tax=Eutheria RepID=Q29RS9_BOVIN Length = 337 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 122/315 (38%), Gaps = 44/315 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ +V QE V+ L L + + LF G G GKTS A+ L Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF 96 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 ++E++A+ ++ R+ + N G Sbjct: 97 GPELFRLR------------------VLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FK+ ++DE ++ + AL +T+E+ + +F L ++ + SRC +F Sbjct: 139 KPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVS 233 K L + + +L I ++EH+ + L + +EG LR A++ A +G +V+ Sbjct: 199 FKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVT 258 Query: 234 TQAVSAMLGT------LDDDQALSLVEAMVEAN---------GERVMALINEAAARGIEW 278 + ++ + G L + +VE + +A +++ A G + Sbjct: 259 EKVITDIAGDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADE 318 Query: 279 EALLVEMLGLLHRIA 293 L+ + + + Sbjct: 319 HLQLISLCATVMQQL 333 >UniRef50_Q0WNH1 STICHEL n=6 Tax=rosids RepID=Q0WNH1_ARATH Length = 634 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++K+RP F +++GQ V+ +L N + RI YLF G RG GKTS AR+ + LN Sbjct: 449 RSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALN 508 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--QYAPARGRFK 121 C PCG C C + G+ D E+D A++ + R LL N+ +K Sbjct: 509 CVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYK 568 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V++IDE H+L ++ + LK LE P + V F+ TTD + +P TI SR + Sbjct: 569 VFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRLACVGPDCYE-- 626 Query: 182 QIRHQLEHIL 191 R L Sbjct: 627 --RGWLTSRC 634 >UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB Length = 456 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 79/454 (17%), Positives = 152/454 (33%), Gaps = 50/454 (11%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ+ +L A L + GR+ H+ + G G GKT++A LLA Sbjct: 24 PLAERMRPRTLDEMVGQKRLLAADSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHY 82 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + E + A + + D R +L A GR Sbjct: 83 ADAEFKAIS-------------------------AVLSGLPDVRQVLAEAAQRFASGRRT 117 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +DEVH ++ +A L +E +L +LSRC L+ + + Sbjct: 118 VLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQ 177 Query: 182 QIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDGQ 231 I L+ L+ +E I +L +A AA+G +R AL+L + + G+ Sbjct: 178 DIVEALQRALHDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEGGE 237 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + + +L G DQ +L +++ +N + + + G + L Sbjct: 238 ITPRTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYL 297 Query: 282 LVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 + + + I + ++ + I R+ + + LY + Sbjct: 298 ARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYA 357 Query: 341 YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + V + + + H R + Q Sbjct: 358 AFNQAKAEVRASGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHDAEGGIALDQTGFPDAMG 417 Query: 401 PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPA 434 V + ++ +A+ Sbjct: 418 ERVYYNPVPRGMEIKLKEKLDRLREARAQARADK 451 >UniRef50_C9KPY4 Replication-associated recombination protein A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPY4_9FIRM Length = 462 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 123/354 (34%), Gaps = 51/354 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ LAR+ RP+ F + VGQ+ + L + + +I + +F G G GKT++A Sbjct: 38 TFEPLARRMRPRNFDEFVGQQEAVGRGHFLRRMIEMDQIP-SIIFYGPPGTGKTTLA--- 93 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPAR 117 + I +++A S + D R ++ + Sbjct: 94 ---------------------QMIAAMTDSAFEKLNAVSA-GISDLRRIVKEADEARRYY 131 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R + IDE+H ++ + LL +E+ + ++ +LSR L Sbjct: 132 QRRTIVFIDEIHRFNKSQQDVLLPYVEDGRLILIGATTENPFFEVNHALLSRVRIVRLYQ 191 Query: 178 LDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--- 227 L Q+ L L +E H+ L +A+ A G R AL+L + A A Sbjct: 192 LTDAQLVEVLRRALKDEERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLLEGAAAMLPT 251 Query: 228 GDGQVSTQAVSAM----------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G V+ + + G D A + +++M ++ + + + A G + Sbjct: 252 TGGTVTLDMLEEITGERVQRYDKTGDNHYDTASAFIKSMRGSDPDAALHYLARMLAAGED 311 Query: 278 WEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 + + ++ + L A + I Y Sbjct: 312 VKFIARRIVICASEDVGNADPMALPLAMAAAEAVQFVGMPEARITLAQAVTYIA 365 >UniRef50_C1ZK45 Putative uncharacterized protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZK45_PLALI Length = 365 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 74/371 (19%), Positives = 140/371 (37%), Gaps = 39/371 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATP 72 +++V GQ + L + GR+ H YLF G +GVGK +A+ A+ + C+ Sbjct: 4 WSEVRGQSMAIEQLRKAVERGRLAHGYLFVGPQGVGKRLVAQKFAQAILCKERKPHELEA 63 Query: 73 CGVCDNCREIEQGRFVDLIEI---DAASRTKVEDT---------RDLLDNVQYAPARGRF 120 CG C +CR G D + + ++ L + P G Sbjct: 64 CGTCTSCRPFLAGNHPDFQVVECPEGKREIPIDLLVGSKENRGQEGLCHGLSLKPLSGSR 123 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +ID+ H+L+ NA+LKTLEEPPE +L + + + TI SRC + L Sbjct: 124 KIAIIDDAHLLNDAGANAILKTLEEPPELAVLILVASTLETVLPTIRSRCHLVRFQQLGY 183 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E I L E + E ++ +++ +GSL A + D A+ + Sbjct: 184 EDIEALLS----AEG-SIETGMVKEVSQMCDGSLSMAKEMLDPALWELRKTLRKTLCERR 238 Query: 241 L-GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + G S +E+ +E +A+ + + ++ L R+ V Sbjct: 239 IPGQKTAQMIFSYLES-----------HSSETSAQRESIQHIFRFVIDDLRRVIQVVCGA 287 Query: 300 AALGNDMA---AIELRMRELARTIP--PTDIQ---LYYQTLLIGRKELPYAPDRRMGVEM 351 + + + ++A+++ P I+ ++ ++ + + +E Sbjct: 288 ETREQNHSLVRDSHNEIVQMAKSLSPDPETIECFAKMCDRVMEASGQVLQNVNLSLCLEA 347 Query: 352 TLLRALAFHPR 362 Sbjct: 348 CFDDVSRMRAN 358 >UniRef50_Q84FP3 DNA polymerase III gamma and tau subunits n=3 Tax=Arthrospira RepID=Q84FP3_SPIPL Length = 768 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 136/308 (44%), Gaps = 5/308 (1%) Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 L+ HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + ++ Sbjct: 261 LLVHNCHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQA 320 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + LE I +E+IA P A+ ++A+ A+G LRDA ++ G+++ + V ++G Sbjct: 321 MATHLETIAAKENIAITPEAVMMVAQIAQGGLRDA-ESLLDQLSLLSGEITVERVWDLVG 379 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + ++L+EA+ E ++ E RG + +L + + + + +P Sbjct: 380 AVPERDLMTLLEAIAEGKATAILDQTRELLNRGRDPLIVLQNLGEFYRDLLIAKTAPNRQ 439 Query: 303 GND--MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR--ALA 358 + ++ I + L ++ R+ +E+TLL A Sbjct: 440 DLVKLTQPTWESLCAFSQRWEHEIILAGQKHLRDSEVQIKNTTQPRLWLEVTLLGLLPEA 499 Query: 359 FHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQ 418 P+ + PT+ M V P A + V +P+ Q Sbjct: 500 LRPQTVSTGVVNVQPQPISNQPTSKMRSQPVYKPPAPAQPVSQAVSVPDAPPPPPPPPQP 559 Query: 419 LQRVQGAT 426 Q Sbjct: 560 TTANQEEA 567 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 75/195 (38%), Positives = 106/195 (54%), Gaps = 20/195 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQTFAD+VGQE + L N + RI AYLF+G RG GKTS AR+LAK Sbjct: 1 MTYEPLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC + T TPCG+C+ CR I G +D +EIDAAS T V+ RDL++ Q++P + Sbjct: 61 SLNCLQTSNPTETPCGICEVCRGITTGATLDFVEIDAASNTGVDHIRDLIERTQFSPVQC 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KVY+IDE L+ + +L+ ++ L C Sbjct: 121 RYKVYVIDEC--LTGDA----------------LILSDRGWLRIDDPTLQECRVLSYNES 162 Query: 179 DVEQIRHQLEHILNE 193 + Q+ L++ Sbjct: 163 TQQWEWQQVLRWLDQ 177 >UniRef50_O69170 DNA polymerase III subunit delta' n=152 Tax=Enterobacteriaceae RepID=HOLB_YERPE Length = 340 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 127/355 (35%), Gaps = 43/355 (12%) Query: 1 MSYQVLAR-KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M++ +R +VGQ S GR HHA L G G+ ++ L+ Sbjct: 1 MNWYPWLNAPYR-----QLVGQH----------STGRGHHALLLHSLPGNGEDALIYALS 45 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPA 116 + L C+ CG C +CR + G D + S VE R L+D + Sbjct: 46 RWLMCQQRQGEKSCGECHSCRLMLAGNHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQ 105 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 +G KV + +L+ + NALLKTLEEPPE FLL P L T+ SRC ++L Sbjct: 106 QGGAKVVWLPHAEVLTDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWYLA 165 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 D L + I EP A+ + +EG+ A L S + Sbjct: 166 CPDTAICLQWLNLQWRKRQIPVEPVAMLAALKLSEGAPLAAERLLQPERWSIRSAL---- 221 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 L EA+ ++ ++ +N + L + LL Q Sbjct: 222 ------------CSGLREALNRSDLLSLLPQLNH-----DDAAERLQWLSSLLLDALKWQ 264 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGV 349 +++LA + + L R +L +R + + Sbjct: 265 QGAGEFA-VNQDQLPLVQQLAHIAATPVLLQLAKQLAHCRHQLLSVVGVNRELLL 318 >UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria RepID=B0CAJ0_ACAM1 Length = 742 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 94/660 (14%), Positives = 200/660 (30%), Gaps = 77/660 (11%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + VGQ+ ++ L + ++ + +F G G GKT++A+++A Sbjct: 17 PLAARLRPRTLDEFVGQDEIVGPGRLLRRAIQADQLS-SLIFYGPPGTGKTTLAQIIA-- 73 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 A ++D R +D Q G+ Sbjct: 74 -----------------------NTTQAHFLALNAVLAGIKDIRSSVDEAQDRRGQYGQR 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DEVH ++ +ALL +E + ++ ++SR F L++L Sbjct: 111 TILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKALVSRSRIFQLRSLMP 170 Query: 181 EQIRHQLEHILNEEHIAHEPRAL-------QLLARAAEGSLRDALSLTDQAIASGDG--- 230 + +R LE L +++ + A+ + L A G R L+ + AI + + Sbjct: 171 DDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEPDDQ 230 Query: 231 ---QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++ A + G D + +++M ++ + + + G + Sbjct: 231 GVIPITLAVAEASIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDAALYWLARMVYAGED 290 Query: 278 WEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + M+ L + + + A R+ P LY T Sbjct: 291 PRFIFRRMIILASEDVGLADPQAVGVVMACAQAFDRIGLPEGQYPLAQAALYLSTA---- 346 Query: 337 KELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P + + +P P + R A P + Sbjct: 347 ---PKSNSALAYFDALASVEKEREGDVPNPLRDKSRDKHAFGHGANYKYPHAYRDHWVAQ 403 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDR 456 ++ + + Q A + + + + + + + Sbjct: 404 QYLPDSLQGQVFYQPSDQGAEAAIQTQIARQREAQLSGISETSTQETVSYGPKDSKRERW 463 Query: 457 VQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAE 516 +Q + A + + + EV + L + Sbjct: 464 LQRTMSQTGDHAAWVRDRIFSFTQIQRHHVVLEVCSQTGLLTWEALRRTPEGSVYTHVSS 523 Query: 517 AIERDPWAAQVSQLSLPKLVEQVALNAWKEES---DNAVCLHLR--------SSQRHLNN 565 AQV LS + VA ++ ++ D+ L ++Q H + Sbjct: 524 DKVAQTLEAQVKALSALQRPICVAGSSSDLKTLIYDHTPDLQFDWILGRNTFANQMHQLD 583 Query: 566 RGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTP-----LEWRQAIYEEKLAQARESIIA 620 R A + LA+ L L ++ + E + E ++ A ++ Sbjct: 584 RPAAENLAQQLISLLRPEGQIVLAETIPKYGQRICDLVKAEDVGQALYQRWQTAEAALYQ 643 >UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA20_CARHZ Length = 444 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 124/354 (35%), Gaps = 54/354 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ + +GQEH+L L + R+ + +F G G GKT++AR++A Sbjct: 16 PLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLG-SLIFYGPPGTGKTTLARIIA-- 72 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 E A + V + R+++ + G Sbjct: 73 -----------------------STTKSGFESINAVTSGVGEIREVIKKAKEREKYYGER 109 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+H ++ +ALL +E + ++ +LSR F K L+ Sbjct: 110 TVLFIDEIHRFNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEP 169 Query: 181 EQIRHQLEHIL-NEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 E IR + L ++E + AL L A G R AL+ + A+ + Sbjct: 170 EHIREIVRRALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIELAVLTTPPDED 229 Query: 230 --GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 +++ + + + G D + ++++ ++ + + + G + Sbjct: 230 GVRKITVEIIEQSMQKKAIVYDKEGDNHYDTISAFIKSLRGSDPDAAVYYLARMLEAGED 289 Query: 278 WEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 + ++ + + + + +P + +Y Sbjct: 290 PRFIARRLIVHAAEDVGLADPMALNVAVAAFHALEFVGMPEARLPLAEAAIYIA 343 >UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax=candidate division TM7 RepID=UPI00016B2545 Length = 400 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 121/362 (33%), Gaps = 44/362 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ LA RPQ D++GQ H+L L + + + G G GKT++AR+ Sbjct: 1 MNKTPLAELMRPQKIKDIIGQRHLLSEGKILYKIIKQKE-PVSLILWGPPGSGKTTLARI 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +AK +A + ++ ++++ + Sbjct: 60 IAKE-------------------------TEANFMELSAVTSGKKEINNIIEIARQNWNL 94 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V +DE+H S+ +A L +E + ++ +LSR LK Sbjct: 95 QLRTVLFVDEIHRFSKVQQDAFLPHIESGLITLIGATTENPSFEIITPLLSRVKVMTLKP 154 Query: 178 LDVEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 L+ + I+ L + + +++ LA + G R AL + + G+++ Sbjct: 155 LEDKDIQQILTKAIEKLAKSKLVTNESIEYLAHISSGDARVALGNLELVLGINKGKITPD 214 Query: 236 AVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 ++ L G D + +++M ++ E + + G + + + M Sbjct: 215 TINIALQKIPPTYDKNGNYHYDTISAFIKSMRGSDVEATLYYLARMINAGEDPKFIARRM 274 Query: 286 LGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK--ELPYA 342 + I +V +L R+ + R+ L + Sbjct: 275 IIFASEDIGLVGNGALSLAVATFQAVERVGLPEASYNLFHCATALARSNKSREVTNLMHN 334 Query: 343 PD 344 Sbjct: 335 AQ 336 >UniRef50_Q8XHN4 DNA polymerase III delta' subunit n=9 Tax=Clostridium perfringens RepID=Q8XHN4_CLOPE Length = 307 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 113/336 (33%), Gaps = 37/336 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G V + +S + HA+L G G+GK+ +A A + Sbjct: 1 MIGHNKVRDRFSKSVSKNALSHAHLIIGEDGIGKSLLADEFAYKILGIPSQRE------- 53 Query: 78 NCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 VD++ + V+ R+++ P KV +I L+ + Sbjct: 54 ---------HVDIVHYKSEKASFGVDLVRNIIAEANKKPYECDRKVIIIHNGEKLTVAAQ 104 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLKT+EEP + ++ +++ + TI SRC L L E+I I + + Sbjct: 105 NALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSKEEINLY---ISKKYN- 160 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + + L +EG + + + + + +++ + Sbjct: 161 GIDDELNRTLISFSEGIPGRV------------DKFMNDDIFKDI----RNTVIEMLKDI 204 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 E + ++ + E +L + + + L +RE+ Sbjct: 205 GHGKIEVPIKYSDKFYSMKGNEEEILETITIFARDSIIFKEIENNLSIINGDKIDDIREI 264 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A + + + + R L + + ++ Sbjct: 265 ASNLSYNKLNRIIKVVNEARNNLKSNTNLWLTLDSM 300 >UniRef50_C3JWH0 DNA polymerase III subunit delta n=3 Tax=Corynebacterineae RepID=C3JWH0_RHOER Length = 405 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 142/403 (35%), Gaps = 58/403 (14%) Query: 15 FADVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 F +VGQ V +L + R + HA+LF+G G G++ A A L C + Sbjct: 7 FGRLVGQHDVEQSLRDAALSARGDSSGSEMTHAWLFTGPPGSGRSVAALCFAAALQCTSD 66 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLID 126 CG C C G D+ I V+ R++++ P GR++V +++ Sbjct: 67 GAPG-CGECHACTTTMGGTHGDVRRIIPDGLSISVKGMREIVNIASRRPTTGRWQVIVVE 125 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + L+ + NALLK +EEPP+ LL TTDP+ + VT+ SRC L VE I Sbjct: 126 DADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTLRSRCRHMPLVTPSVESIA 185 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT- 243 L +P ++ A + G + A L A + Q S + + +G Sbjct: 186 QVLIDR-----DGLDPERARIAASISGGHVGRARRLATDESARDERQRSLRLAADAIGAS 240 Query: 244 LDDDQALSLVEAMVEANGE----------------------------------------R 263 A +LV+++ Sbjct: 241 TAYKAAENLVKSIEADTKAFYAELKEQELEELKVSLGGGGTGKGTAGTLRGSAGLIKDLE 300 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 + AR + L+++ G+ A+ + + + ELA P Sbjct: 301 ARQKSRDTRARRDLLDRTLIDLAGMYRD-ALSCSLGSTSTATHPDMARQAAELAARTSPE 359 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + + +L R+ + + + ++ + A Sbjct: 360 GLLKCIEAVLECREAVDFNVKLQWALDAMVASIGAAFRPPFSR 402 >UniRef50_B1GZZ9 DNA polymerase III delta' subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZZ9_UNCTG Length = 319 Score = 169 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 134/330 (40%), Gaps = 36/330 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE----TGITA 70 F ++GQ+ + ++N + G+I HAY+F G GVGK A AK LNC A Sbjct: 2 FESILGQKKIKKIISNQVKSGKIAHAYIFVGQDGVGKRLTAVEFAKILNCNVDDFIKTDA 61 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAASR-------------TKVEDTRDLLDNVQYAPAR 117 CG C +C++IE+ DL ID A + K+E R + V Sbjct: 62 GTCGKCISCKKIEKNIHPDLHFIDFARQAELEEECLEKQRTLKIETIRYMQKEVATKIHE 121 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G++K+++I+ ++ + N+LLKTLEEPPE+ +L + +P TILSR + Sbjct: 122 GKWKIFIIEPAERMNAAAANSLLKTLEEPPENTIIILIAKHKETIPQTILSRVQTLFFQP 181 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 L +I L + + + + +A +EGS + A + Sbjct: 182 LGQNEISSWLM-----LNCSVDAAKARDIAELSEGS-------LENAKKLVGKNEKEEFS 229 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEAL------LVEMLGLLH 290 + + ++E + ++ ++ +++L Sbjct: 230 LWLKFKTRNFYISDILELSKNIAAAGALECVDAMIAEAKKDFRMYPQRTAPALDLLSASR 289 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTI 320 + + ++ + +++ +++++ + Sbjct: 290 VLLLKNVNAMTVLDNLFFDLSDLKKMSGLL 319 >UniRef50_Q1J621 DNA polymerase III subunit gamma/tau n=2 Tax=Bacteria RepID=Q1J621_STRPF Length = 135 Score = 169 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 64/125 (51%), Positives = 82/125 (65%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 YQ L RK+R QTF ++VGQ + T L + G+I HAYLFSG RG GKTS A++ AK + Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAM 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 NC + PC CD CR+I G D+IEIDAAS V++ RD+ D YAP+R +KV Sbjct: 62 NCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKV 121 Query: 123 YLIDE 127 Y+IDE Sbjct: 122 YIIDE 126 >UniRef50_A6LPM5 DNA polymerase III delta' subunit n=3 Tax=Clostridium RepID=A6LPM5_CLOB8 Length = 310 Score = 169 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 127/343 (37%), Gaps = 39/343 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G ++++ + N HA L G G+GK+ +A+ L+ + E Sbjct: 4 IIGHKNIIDNINNRRQKDSFSHANLIIGNDGIGKSIVAKYLSNQIIKERNGV-------- 55 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 + ++ V+D R+++ V P G KV ++ + L+ + N Sbjct: 56 -------ESVDIVRYSPNSNSFGVDDVRNIISEVNKKPYEGDKKVLILYKCDKLTVQAQN 108 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 ALLKT+EEPP V +L + + + TI SRC + L L+ E+I LE + + Sbjct: 109 ALLKTIEEPPRGVHLILLSDSLEVILDTIKSRCQIYRLTPLNKEEILSYLE---EKYNNL 165 Query: 198 HEPRALQLLARAAE--GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 E LA +A G++ D ++ D + L E Sbjct: 166 SEDDKKAALAYSAGIPGNVDR---------FFSDDKL----------RNLRDICIELFED 206 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 +V ++ + + LL +L + I +++ + +++ Sbjct: 207 IVSRQKGIILKYEELLKSAKEDKLELLNILLSYIRDILLLKELNDSELVVNFDKIYKIKN 266 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++R I + + + R + M + + L+ Sbjct: 267 ISRGISYKKLNSMLEYIKEARINFNSNTNYSMVISVLLMGFAE 309 >UniRef50_A8U6Y2 DNA polymerase III subunit delta' n=1 Tax=Carnobacterium sp. AT7 RepID=A8U6Y2_9LACT Length = 328 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 28/341 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + ++ HAYLF G G GK ++ LA L C+ G PC C NCR Sbjct: 11 QPVLVKQFTKTVQQKQLAHAYLFEGISGTGKKEMSLWLAASLLCQDGEANLPCEKCQNCR 70 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 + + + D+IEI KVE R+L + K+++I++V ++ + N+L Sbjct: 71 RVFEHQHPDVIEIIPDGLSIKVEQVRNLKAEFSKSGVESHQKIFIIEDVEKMTTGAANSL 130 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP L TT Q++ TILSRC H +AL +L L + ++ Sbjct: 131 LKFLEEPEGSAVAFLLTTAKQRILPTILSRCQLVHFQALTK----KKLMAELETKGLSIN 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 +L L + S+ +AL + +++ + Sbjct: 187 QASL--LVQLTN-SVEEALEMNGDEWFQEAKKIT----------------WKWFTLITSK 227 Query: 260 NGERVMALINEAAARGIEW---EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + + + + + LL +L + M+ A + + + Sbjct: 228 DSQSFIYVQTTIMPHFKDRDAHRRLLDLILLAYRDVLMIHYH-TLDVLAYARYQKELDHI 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 I + +L+ RK+L + + E +L+ + Sbjct: 287 KTEYTGKAIIQAIEDVLLSRKKLESNVNAQGVFEQLVLQLM 327 >UniRef50_Q3JAL5 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosococcus oceani RepID=Q3JAL5_NITOC Length = 337 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 122/344 (35%), Gaps = 30/344 (8%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDN 78 + +L R+ HA L G G+GK S A L + L+CE CG C Sbjct: 7 WHQSHWNSLMASQIAKRMPHAILLMGPEGMGKRSFASNLIQALSCEYPQKGGHGCGSCAG 66 Query: 79 CREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 CR G D + + + V R L ++ + FK +I ++ + Sbjct: 67 CRLQLAGSHPDNLTLFPREGKQTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSA 126 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N+LLK LEEPP LL T+ +LP+TI SRC Q ++++ L+ L Sbjct: 127 ANSLLKILEEPPGRTVLLLITSASLRLPITIRSRCQQLFFTISKSQEVKMWLQQRLPP-- 184 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 + A+ L R + G AL +Q + S G LD +V + Sbjct: 185 -SMNLDAVT-LLRLSGGGPLRALEYVEQNFLFYRKEFINNLFSLTQGKLD---LFEMVRS 239 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++ N + I+ ++ + + ++ Sbjct: 240 CLKDNLGEPLYWISTLVE-----------------DTIRLRSGVSKRFLVNHDVANSLQL 282 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRAL 357 LAR + + R+ + ++ +E L++ L Sbjct: 283 LARRASFEMLFALLKKASCNREIWKGQININPQLLLEEILIQWL 326 >UniRef50_Q03SS1 DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03SS1_LACBA Length = 337 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 124/338 (36%), Gaps = 28/338 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++T L + R+ HAYLF+G G G+ +A+ +A L C+ PCG C CR Sbjct: 14 QPQLVTHLMTLIKTKRLAHAYLFNGADGTGRQQVAQTVAMRLFCQNVTDNLPCGQCSECR 73 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D++ + + KV+ R L + G K++++D+V ++ + N+L Sbjct: 74 RILAGDHPDVVSVVPDGQRIKVDQVRYLKAEFTKSAVEGNQKIFIVDQVERMTTGAANSL 133 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP + LL T + + TILSR + + L L + I Sbjct: 134 LKFIEEPVGNTVALLLTANKNLILPTILSRTQIVDFLRVAPQA----LLTALADAGITP- 188 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 S R L+ +++ + V + A Sbjct: 189 -------------SQRYLLTTLTESVTAAQDLVVDDWLKDA-----QQAVGQWFSACCTG 230 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQ-LSPAALGNDMAAIELRMRE 315 + + + E + + LL ++ H Q + A + ++ Sbjct: 231 DERAFVRVQTELVPLALNRDRQGVLLDMVVQAWHDALRQQNATLEAASLAFPKVAQASQQ 290 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +A+ + + L R +L + + +E Sbjct: 291 VAQRLSIDQLVRVMTLTLATRGQLAGNLNFQAILEALT 328 >UniRef50_A2QER5 Contig An02c0380, complete genome n=71 Tax=Eukaryota RepID=A2QER5_ASPNC Length = 388 Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 75/372 (20%), Positives = 140/372 (37%), Gaps = 61/372 (16%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 Q RP+T DV Q+H L L + H LF G G GKTS LAK L Sbjct: 34 QQPWPHS-RPKTLDDVAAQDHTTKVLQRTLQASNLPH-MLFYGPPGTGKTSTILALAKSL 91 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---- 118 + + ++E++A+ + R+ + N A Sbjct: 92 FGPSLYRSR------------------ILELNASDERGIGIVREKIKNFARAQLTHSTGL 133 Query: 119 -----------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 FK+ ++DE +++ + +AL +T+E+ +F L ++ + Sbjct: 134 GEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLA 193 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC +F KALD +LEHI E++ E + L +EG +R A++ A Sbjct: 194 SRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKL 253 Query: 228 --------------------GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN----GER 263 ++ + + + G + + +LV+AM E Sbjct: 254 VGAGRAGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEA 313 Query: 264 VMALINEAAARGIEWEALLVEML-GLLHRIAMVQLSPAALGNDMAAIELRMRELA-RTIP 321 V ++ + A G LL+++ ++ A+ + + + ++ R+ + A + Sbjct: 314 VAKVVTDIIADGWSATQLLLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLS 373 Query: 322 PTDIQLYYQTLL 333 D+ L +L Sbjct: 374 ILDVALKISGIL 385 >UniRef50_Q5CUE4 Replication factor RFC3 AAA+ ATpase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CUE4_CRYPV Length = 383 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 137/392 (34%), Gaps = 72/392 (18%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP D++ + ++ + +S G++ H LF G G GKTS ++K Sbjct: 10 AQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPH-LLFHGPPGTGKTSTIHAISKC 68 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG--- 118 + + + ++E++A+ + RD + + + + Sbjct: 69 IYKDRK-------------------YQMVLELNASDDRGINVVRDAIKSFSESASTTLNH 109 Query: 119 -----------------------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 K+ ++DE M++ + AL + +E EH Sbjct: 110 SGGTNSNIEDIEMSDVSTRNLDCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEH 169 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 V+F + K+ + SRC +F L +E IR+++ I E I + L ++ Sbjct: 170 VRFCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKS 229 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 + G +R L++ S G + G L+ L+ + E +I+ Sbjct: 230 SRGDMRKVLNVLQSCSMSNYGNIEK---HKDSGELNGASIEGLITYINE-------EMIH 279 Query: 270 EAAARGIEWEALLVEMLGLLHR------IAMVQLSPAALGNDMAAIELRM--RELARTIP 321 GI ++ L + G+L R + +Q S G + + + P Sbjct: 280 RIL--GIPTKSELDYIFGILSRESFSSGFSALQNSQNENGYSTQDFVNGLYSKSMEANWP 337 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + L + L L + + + Sbjct: 338 DEVVPLLMRRLADIEYRLSRGASESIQLAAIV 369 >UniRef50_B9XBX7 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XBX7_9BACT Length = 344 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 135/349 (38%), Gaps = 22/349 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F D Q+ +T L L GR+ H YLFSG ++AR LAK LNC+ + P Sbjct: 1 MSFKDFPEQKQPVTLLQRSLERGRLAHGYLFSGHSLGELEALARTLAKTLNCQEPVRLVP 60 Query: 73 -------CGVCDNCREIEQGRFVDLIEIDAASRT---KVEDTRDLLDNVQYAPARGRFKV 122 C C NCR+I+ D+ + S++ ++ RDL+ + P +KV Sbjct: 61 GGPAVDCCDKCVNCRKIDAENHADVHWVRPESKSRVVTIDQMRDLMQEINLKPNEAEYKV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +I L+ + NA LKTLEEPP +L TT+PQK+ TILSRCL+ + + Sbjct: 121 AVIVAADRLNVQAANAFLKTLEEPPAKSILVLLTTEPQKILETILSRCLRLNFAGEGNKA 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L LL R + G++ + A+ Sbjct: 181 LAAAQMEWLRAFSELAAEEQKSLLGRY----------RLLGVLLKTLGELKEEIEKALTA 230 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 ++ L + + E + A I A ++ +L + L + + + Sbjct: 231 RSPLERYDDLDPKLRDRWEEELSAAIE--AEYRLQRADVLGLLQWWLRDVWLRTMPLEGA 288 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 ++A+ I Q L ++ L + +E+ Sbjct: 289 ELLSFPELPTAAQVAKRISSEQAIKNLQVLERMQRLLGSNVQEALALEV 337 >UniRef50_C0WUL6 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus RepID=C0WUL6_LACBU Length = 336 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 116/334 (34%), Gaps = 28/334 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + + + HAYLF+G G G+ ++A +A L C PCG C C Sbjct: 13 QPKLFEQFMRLVDRNELSHAYLFTGEDGAGQNAVAMGVAMRLFCTNVKDGYPCGKCAECT 72 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ KV+ R + + G KV++I + ++ + N+L Sbjct: 73 RIMNHDHPDVVITKPDGLSIKVDQIRHVKSEFTKSAMEGSKKVFIISDADKMTTGAANSL 132 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V L + + + TI+SR ++ + + +L Sbjct: 133 LKFIEEPTGNVVSFLISQNRNLILPTIVSRTQVVEFPSIGKDVMNQELRKS------GIL 186 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P + LL S+ ++LS + + L + +V+ Sbjct: 187 PSQINLLM-----SMTNSLSEI--------KRWQADNWFSSL----QEVVSKWFGYLVKG 229 Query: 260 NGERVMAL---INEAAARGIEWEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRE 315 N + + + + L M+G+ + + + I ++ Sbjct: 230 NLMAMPYIQMALMPLITNKERQQVALSMMIGVFDETLEIKYGTLKKDTTKFPDIISETKQ 289 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 A+ + + LL R L + + + Sbjct: 290 AAQEWSSDQLMTMLEELLNTRGSLMVNVNFQNVI 323 >UniRef50_B6KT76 Activator 1 36 kDa, putative n=3 Tax=Toxoplasma gondii RepID=B6KT76_TOXGO Length = 398 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 57/349 (16%), Positives = 118/349 (33%), Gaps = 59/349 (16%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 K+RP+ +DV+ + ++ + N + G++ H LF G G GKTS +AK Sbjct: 34 ALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPH-LLFHGPPGTGKTSTILAVAKEF 92 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF-- 120 ++E++A+ + R+ + + Sbjct: 93 YGSAVR-------------------THVLELNASDDRGINTVREQIKTFAETSSTSFQQN 133 Query: 121 ---------------------------------KVYLIDEVHMLSRHSFNALLKTLEEPP 147 K+ ++DE ++ + NAL + +E Sbjct: 134 RLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYA 193 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 +V+F L K+ I SRC F + ++ + I+ +E + L L Sbjct: 194 RNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 253 Query: 208 RAAEGSLRDALSLTD-QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 + A G +R L+ +A +V+ V LG + ++ E ++ A+ Sbjct: 254 KIARGDMRRLLNCMQASHLAHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFACCK 313 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 ++E + + + H ++ PA + + + E Sbjct: 314 ELDELVTAK---GYAMRDWVIAFHERILLVDWPANVLITFVSRLADLEE 359 >UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms RepID=B6HVW8_PENCW Length = 539 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 120/365 (32%), Gaps = 44/365 (12%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP+T +V GQE V L + R+ + + G+ G GKT+IAR++A + Sbjct: 123 PLAERMRPKTLEEVCGQELVGPNGILRGLIEQDRVP-SMILWGSAGTGKTTIARVIASLV 181 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 + C++I + GR + Sbjct: 182 GSRFVEINSTSSGVAECKKIFA------------------------EARSELGLTGRKTI 217 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 DE+H S+ + L +E + K+ +LSRC F L L E Sbjct: 218 IFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTDED 277 Query: 183 IRHQLEHILNEEHIAH------EPRALQLLARAAEGSLRDALSLTDQAIASGDGQ----- 231 I L L E ++ + +Q LAR A+G R +L+L + A+ Sbjct: 278 IISILHRALQVEGPSYSPSELVDEELIQYLARFADGDARTSLNLLELAMDLSKRAGMDKE 337 Query: 232 -----VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 ++ V G D + +++ ++ + + + G + + ++ Sbjct: 338 DLKRSLTKTLVYDRAGDQHYDTISAFHKSIRGSDPDAALYYLARMIQSGEDPLYISRRLI 397 Query: 287 GLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + I + + +L + ++ I + + + Sbjct: 398 VVASEDIGLADNTMLSLAISTHSAVEKIGLPEARINLAHATVAMALSKKSTRAYRGLNNV 457 Query: 346 RMGVE 350 + Sbjct: 458 FAALN 462 >UniRef50_D1VSU0 Putative DNA polymerase III subunit delta' n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU0_9FIRM Length = 319 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 120/334 (35%), Gaps = 30/334 (8%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 ++V + L L HAYLF G +G+GK + A+ A+ + C C Sbjct: 12 KNVSSQLDLALKNKDFSHAYLFVGPKGIGKFAQAKNFARAILCGDNK-----NDKSFCNL 66 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 + DLIE+ + K E +L++ P K+ LID ++ NALLK Sbjct: 67 LYDYFHPDLIEVSSKETIKKEQIEELIEKAGTKPFESNKKIILIDGFDNVTIEGQNALLK 126 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP +++ +L +++ + + TI SR + + VE+I L E Sbjct: 127 TLEEPEDYLIIILVSSNIKNILPTIRSRARILKFQNISVERIYDYLLKTGLSEKN----- 181 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L + + GS+ A + D+ + +++ ++ Sbjct: 182 -ARLFSNLSCGSISLAKRYKEDVELLKKR----------------DELIEILDNLIRTGS 224 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + ++ E +L +A + + Sbjct: 225 YYIFSYLDFFKENKENIEDILNFFSLWFRDLA-FIKINKKEKIINIDKLNILE--LEDLT 281 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I Y +L+ ++ L + + +E L+ Sbjct: 282 LDRILFIYNKILLTKENLSKNMNYDLSIEALLMY 315 >UniRef50_C6NZM0 DNA polymerase III, delta prime subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZM0_9PROT Length = 335 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 73/360 (20%), Positives = 135/360 (37%), Gaps = 52/360 (14%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDN 78 Q AL R+ HA L G +G+GK +A A+ L CE T C C++ Sbjct: 7 WQSESWQALQGL--RNRLPHAVLLKGAQGIGKLDLAMNFAQSLLCEKPNADGTACHTCNS 64 Query: 79 CREIEQGRFVDLIEI------------------DAASRTKVEDTRDLLDNVQYAPARGRF 120 C EQ D + + V+ R+L + + G + Sbjct: 65 CHWFEQENHPDFRLVQPDALSSADEGDEKQGGKKPSREISVDQIRNLSNFANLSAHCGGY 124 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V LI ++ ++ N+LLKTLEEP +++ FLL + PQ+L TILSRCL F + Sbjct: 125 RVVLIHPAESMNNNAANSLLKTLEEPTDNLLFLLISHKPQQLLPTILSRCLGFTVSTPTR 184 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 E L ++ + + AL + + AL ++ + + + Sbjct: 185 ELGTAWL----EQQGVKNPAHALAQ----SGFAPLQALGWSESGEGAEERSI-------- 228 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 L+ A+ + + +AL + + + + H + +L+ Sbjct: 229 -----------LLNAIRQPSKMDALALADGL--QRSAPIYSIHCLQQWCHDLTSAKLAG- 274 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + +LA + + + + LL R+ + + ++ +E LL Sbjct: 275 -MVRYFPEQAGEITKLANGVSSDALLRFQKELLEARRAAYHPLNPKLFLESLLLSYRQLF 333 >UniRef50_C7CMJ4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CMJ4_METED Length = 806 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 107/562 (19%), Positives = 193/562 (34%), Gaps = 17/562 (3%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 A +RP TF V GQ+ V+ L+ ++ GRI + L G G GKT++AR+ A+ LNCE Sbjct: 100 FADAYRPHTFKKVFGQDSVVACLSGLIARGRIGRSILLHGAVGSGKTTLARIYARALNCE 159 Query: 66 TG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTK-VEDTRDLLDNVQYAPARGRFKVY 123 A+PC C+ C + + + E + + R ED L ++++ Sbjct: 160 APDPRASPCYACEACGRLGEKPIKEFEEYNVSRRGGGREDVERFLSTHDRPVHGAKYRIL 219 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 DE H L+R + + LL +E P ++F+ ATT+ ++L + SR L ++ L V++ Sbjct: 220 FFDEAHALTREACDLLLLPVESPQHAIRFIFATTEAERLRRALRSRLLDLLIRPLPVDRA 279 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L + IAHEP AL LLA EG RD L ++ +++ V A Sbjct: 280 IEFLRQAAEKIGIAHEPGALALLAGLREGYPRDLLLGLERVWERNTPRLTVAQVRAAFDV 339 Query: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-------HRIAMVQ 296 + ++ A+ + + ++ ++ + + + L + R+ + Sbjct: 340 DQTEVLVAYFTALADGDPDQQAEIVFGWQEQATDKIRWIQAFLLHVYHNEILARRLVVDG 399 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR- 355 + A N A I D+ ++ R+ + + P + T L Sbjct: 400 VIEAVPENLRAGIVRGFCARLGLADARDLAPFW------RQMMAFWPVPETATDETALGL 453 Query: 356 ALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAA 415 L ++ E + PT A + PLP ++V+A Sbjct: 454 RLTLFHQLVNAGVEGEAVAAERARPTDAAAAIAQASTIAEASRGFGPPPLPRPGARVVAD 513 Query: 416 RQQLQRVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEA 475 + + S + N A + +A+ + A Sbjct: 514 KAGFLTPADVRRIVNSASFLVQEHGLLFNTAFAITPAALGVSGTASAVAAITAFRDELAA 573 Query: 476 YRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQ-LSLPK 534 + V+ A+A A V Sbjct: 574 QARAWGGGLRAGITVLERDHRGVIGRIVAHLHAPNPLDPADADGARRTEAWVKAWREGAG 633 Query: 535 LVEQVALNAWKEESDNAVCLHL 556 + A+ L Sbjct: 634 RLGGDAVEFAPAPVGERAALRF 655 >UniRef50_C4V935 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V935_NOSCE Length = 310 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 113/275 (41%), Gaps = 29/275 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K+RP++F +V G + V+ L + R+ LF G G GKT+ R+++ Sbjct: 1 MS-IPFVEKYRPKSFDEVEGNQEVIVCLK-AIQESRVIPNMLFYGPPGTGKTTSIRIISN 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L ++E++A+ + R+ + + Sbjct: 59 SL-----------------------PNTSVLELNASDERGISVVRETIKEFA-STYSNTI 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ ++DEV ++R + NAL + +E+ +F L P+K+ I SRC +F + + Sbjct: 95 KLVVLDEVDFMTRDAQNALRRIMEDFSSTTRFCLIANYPKKIITPITSRCSKFRFNPVKI 154 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 R + I +E+I E + L + + G +R ++ QAI G ++ + V Sbjct: 155 --FRKSVLEICKKENIEVEYTGIDFLMKTSYGDMRRVVNDI-QAIGKSFGIINQETVLKF 211 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 L ++ + + + + + ++ + Sbjct: 212 NSMLSTEEFKEIFDWFLCKSYDALLRDLESIKETK 246 >UniRef50_Q1QX48 DNA polymerase III, delta prime subunit n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX48_CHRSD Length = 323 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 125/347 (36%), Gaps = 35/347 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + Q + T L R+ HA L SG GVGK +A L C T CG C Sbjct: 4 LPWQRDLWTRLVRQQDAQRLPHALLISGPHGVGKHDLADALIARTLC-HAPGETACGECH 62 Query: 78 NCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C + G DL++I A + +++ R + V +G +V + ++ Sbjct: 63 ACHMLASGYHPDLLDISPAEKRRQIRIDPIRQVNAFVSQTAQQGGHRVIRLHPAEAMNVA 122 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK+LEEP E F+L P ++ TI SRC + L D E L L Sbjct: 123 ASNALLKSLEEPGERTLFVLLADIPSRMLPTIRSRCQHWSLGVPDAESALPWLSERLE-- 180 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + + R A G + AL L + G + L + Sbjct: 181 ----DAEQARFWLRVAGGLPQFALELVE-------------------GRALRQELRELFD 217 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A+V +A + ++ +L + L + + ++ A + R Sbjct: 218 ALVRG--AEPVAEAARLDPQSLD--RVLWYGIVWLEDLIRLGVAGDAEHVRNPDLLPLYR 273 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLRALAF 359 + + D R+ + P+ ++ +E L+R + Sbjct: 274 QAVKNARVRDWFRLLDYAREQRRLIAAGGNPNAQLVLEAWLVRWASL 320 >UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacteroidetes RepID=C0BGA7_9BACT Length = 425 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 49/310 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M+ LA + RP++ + GQ+H++ L +S G + +F G G GKT++A+L Sbjct: 1 MN-TPLAERMRPKSLGEYFGQDHLVGPKGSLTQMISNGVFP-SLIFWGPPGTGKTTLAQL 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-- 115 LA P +A V++ R+++ +++ Sbjct: 59 LA-------LEKERP------------------FYQLSAINAGVKEIREIISKAEHSGGL 93 Query: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G+ + IDE+H S+ ++LL +E+ + ++ +LSRC + L Sbjct: 94 FSGKSPILFIDEIHRFSKSQQDSLLNAVEKGIITLIGATTENPSFEVINALLSRCQVYVL 153 Query: 176 KALDVEQIRHQLEHILNEEHIAHEP----RALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 L E + L H L ++ I E + + L A G R LSL + I + + Sbjct: 154 NTLKKEDLEKILNHALEKDSIIKEYKIQLKETEALIELAGGDARKLLSLLELVIQANSKE 213 Query: 232 ---VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ V + G D + ++++ ++ + + G + Sbjct: 214 KLILTNDLVFETVQTNSVLFDKNGDFHYDIVSAFIKSIRGSDPNGAIYWLARMIEGGEDI 273 Query: 279 EALLVEMLGL 288 + ML L Sbjct: 274 GFIARRMLIL 283 >UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria RepID=B5Y9V9_COPPD Length = 459 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 118/312 (37%), Gaps = 52/312 (16%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+T ++VGQ+ T L + ++ + + G GVGKTSIA ++A Sbjct: 17 WIPLAERMRPRTLDEIVGQDKAFGKGTLLRKLIEEDKLT-SLVLWGPPGVGKTSIAMVIA 75 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 +A + +++ +++L++ + GR Sbjct: 76 -------------------------NTTKARFLRFSAVTSGIKEIKEVLEDAEVQFNMGR 110 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 V +DE+H ++ +A L +E+ + ++ +LSR L+ L+ Sbjct: 111 RTVIFVDEIHHFNKTQQDAFLPYVEKGAVVLICATTENPSFEIISPLLSRSKVVVLEPLE 170 Query: 180 VEQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD--- 229 E I+ L L + E + L +A ++G R AL+ + A+ D Sbjct: 171 AEDIKTILYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIALNTLEMAVFGTDPNS 230 Query: 230 ---GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 +S + +S L G + +L ++M ++ + + + G Sbjct: 231 EGIRVISDEVISEALQKKTLLYDKAGEEHYNLISALHKSMRNSDPDAALYWLARMLEAGE 290 Query: 277 EWEALLVEMLGL 288 + + ++ Sbjct: 291 DPLYVARRIVRF 302 >UniRef50_B8HT26 Hedgehog/intein hint domain protein n=6 Tax=Bacteria RepID=B8HT26_CYAP4 Length = 1232 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 142/392 (36%), Gaps = 3/392 (0%) Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 L HMLS +FNALLKTLEEPP+ V F+LATTDPQ++ TI+SRC +F + + + Sbjct: 701 LLAHNCHMLSGSAFNALLKTLEEPPKRVVFVLATTDPQRVLPTIISRCQRFDYRRIPLTD 760 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L I +E I AL L+A+ A+G LRDA ++ DGQ++ + V + G Sbjct: 761 MVQHLSTIAEKEGIDIATDALTLVAQIAQGGLRDA-ESLLDQLSLLDGQITIERVWDLAG 819 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + + L L++A+ + E + RG E +L + + + + +P Sbjct: 820 AVPEQDLLKLLQAIATDSAEATLDQARYLMERGREPLVVLQNLASFYRDLLIAKTAPQRH 879 Query: 303 GNDMA--AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + A+ T I Q L ++ R+ +E+ LL L + Sbjct: 880 DLVAITLSTWEELCTFAQNWETTAILAGQQHLRTCEAQVKNTTQPRLWLEVALLGLLPTY 939 Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420 + + P + + P P T V + Sbjct: 940 LTAVRANVDQGTSAIGPPPTRQTVARSPQPTVQPVPTPPPPQPEPLTPTPPVPPPSPRPV 999 Query: 421 RVQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKA 480 A + + P + + + + Q Sbjct: 1000 SPPPAAEPSPAPPVQTEKTELQPSVPVSPHGDLDSLWQKVINQVQPTSTREMLRQLSRLL 1059 Query: 481 TTPVMQQKEVVATPKALKKALEHEKTPELAAK 512 + + + + K A + E A + Sbjct: 1060 GFNDREARIGINSQSWYKNAQDKIPNVEAAFE 1091 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 68/130 (52%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+Y+ L K+RPQ FAD+VGQ + T L N ++ +I AYLF+G RG GKTS AR+LAK Sbjct: 1 MAYEPLHHKYRPQKFADLVGQAAIATTLTNAINQEKIAPAYLFTGPRGTGKTSSARILAK 60 Query: 61 GLNC--ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 LNC T PCG C+ CR I QG +D+IEIDAAS T V++ R+L++ Q+AP + Sbjct: 61 SLNCLQSEKPTPYPCGKCEACRTIAQGVALDVIEIDAASNTGVDNIRELIEKAQFAPVQC 120 Query: 119 RFKVYLIDEV 128 R+KVY+IDE Sbjct: 121 RYKVYVIDEC 130 >UniRef50_B3QU04 DNA-directed DNA polymerase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QU04_CHLT3 Length = 389 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 158/399 (39%), Gaps = 65/399 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---T 69 + + GQE ++ L + R+ +A+LF+G GVGK ++A LAK LNC++ T Sbjct: 1 MAWERINGQERQISVLRRAIKTNRLPNAFLFTGPEGVGKEAVAIELAKVLNCDSPNALLT 60 Query: 70 ATPCGVCDNCREIEQGRFVDLIEI------------------------------------ 93 A C C++C++I + +L I Sbjct: 61 AEACEKCESCKKISALKHPNLEFIFPVEKILLEKTSETGADRAKQEDALERMKALLEEKR 120 Query: 94 ---------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D A + L + Y P G+ +V+++ + ++ S N LLK LE Sbjct: 121 RNPYHSLRMDKAMGILKDQILLLQEKAAYKPLAGKKRVFILSQAESMNEASANKLLKLLE 180 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EPP +V F+L ++ P+ L TI+SRC L E+IR LE + + E A + Sbjct: 181 EPPPYVLFILVSSQPEMLLPTIVSRCQPLRFSKLRPEEIREFLER----QSFSLEADAER 236 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG-ER 263 +A + G+L + + Q S + D+AL L+ ++ + Sbjct: 237 FIASFSRGNLNHVVQMAFQ---------SVENREKPELQRTRDEALQLLRMLLSRDRGHE 287 Query: 264 VMALINEAAAR---GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 V+ + + + R E +L+ ML + + Q +P G A IE + + A+ Sbjct: 288 VIRQVEQFSKRDKTRDEQRQILLAMLRIFQDVVRKQNAPNETGLVNADIETAISKFAQNF 347 Query: 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 P D + + ++ + + ++ F Sbjct: 348 PDADFESAVKETESAIYKIGRNANPFLTFSALCIKLKTF 386 >UniRef50_C0EBC5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC5_9CLOT Length = 327 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 133/344 (38%), Gaps = 36/344 (10%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +T D G + + L L+ GR+ HAYLF G +G GK ++A A+ + C A P Sbjct: 3 KTQFDFYGNKESVQTLTCSLTGGRLSHAYLFYGPKGSGKRTLATQFAQAILCRD-PAARP 61 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C ++ + DL+ S E R + P G +KVY++ V Sbjct: 62 CGRCADCLKVSKLIHPDLLLEGGEGGKSSFHAEVVRKIRSEAYIRPNSGEYKVYILCGVE 121 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +S + NALLK LEEPP HV FLL +P T++SRC+ L ++ + + Sbjct: 122 NMSIAAANALLKVLEEPPRHVVFLLTCESKSAIPETLVSRCVPVALYPVEPRECAEAVAR 181 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + E + + A+SL+ I G ++ + + + A Sbjct: 182 LSGE----TDQAQIDY-----------AVSLSGGLIGGALGLLTDKEMRQA-----SETA 221 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 L ++++ + + +L + G++ + + ++S Sbjct: 222 QKLRDSLLSPDELDTLVASAPLDGNRALTLRVLPLLTGVIRQSILSKVSARPDP------ 275 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 LA + +T+ + L + + + Sbjct: 276 ------LACKYSLKALLRMVKTIDQAQSNLERNANLGLTLCWLC 313 >UniRef50_C9LSD1 DNA polymerase III, delta prime subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LSD1_9FIRM Length = 336 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 133/355 (37%), Gaps = 34/355 (9%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ DV+G E + L L GR+ HA LFSG GVGK +ARLLA L C G PC Sbjct: 6 SWKDVLGHEGNIHRLRTMLRDGRLPHALLFSGISGVGKKKVARLLAAALLC--GREDAPC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTK------VEDTRDLLDNVQYAPARGRFKVYLIDE 127 GVC +CR G D +E SR K ++ R++ P V L+D+ Sbjct: 64 GVCPSCRAFLAGTHSDYVEAAPESRGKGVRVLRIDAVREIEKKAARKPLLSGRFVVLVDD 123 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++ + N+LLKTLEEP V FLL T L TILSR H AL E I L Sbjct: 124 ADAMNEAAANSLLKTLEEPQGAVFFLLVTAKRTALLPTILSRVRDMHFGALSPEGIEEAL 183 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 E R LA AA+GSL AL L + G + Sbjct: 184 LAR------GVESRKAHSLAMAADGSLGHALLLFEGG-----------------GLQLME 220 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDM 306 A + ++ N + A E + E L+ + LL + + Sbjct: 221 DAAQTLFSLSALNMFSLWAKAEELGKLPRDRAEEWLLALSRLLRDMLALLSGRGR--LYH 278 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + P T I + L ++ E L+R Sbjct: 279 EEKRGDLAHALADFPETHIFACLALVRETLGRLRSNASVQLLFEGLLMRLRDAQE 333 >UniRef50_Q2SIR6 DNA polymerase III delta prime subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIR6_HAHCH Length = 335 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 123/345 (35%), Gaps = 35/345 (10%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P 72 + + ++ A L +G GVGK + AK L CE P Sbjct: 8 SLDQLPWLSKTWRDWVGLAHNDKVPSAILVAGQSGVGKNRLTSEYAKFLLCEQAKRLERP 67 Query: 73 CGVCDNCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C +C+ IE G DL + D A K++ R L D + P R ++ ++ Sbjct: 68 CGDCRSCKLIEAGTHPDLQWVAPEDGAKAIKIDQVRGLGDFIYAKPQISRRRICVLTPAE 127 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ +S NA+LKTLEEPP V LL + L TI SRC + L A D E + + L Sbjct: 128 AMNAYSANAILKTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAPDRESVVNWLTQ 187 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + L +A G AL+ Q I +V ++ + G +D Sbjct: 188 ------LDVPKERAYSLTESAGGRPLTALAWHSQDILELRAEVLADWLNYLEGRVDAFTL 241 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 ++ E L + L ++ + + Sbjct: 242 AE--------------------TWSKLDLERLADWLAIWLKQLLTATQIGE---GEGSET 278 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMT 352 E + + + + Y L+ ++ L + ++ +E Sbjct: 279 EATLAGVGARLDTQQLVSLYAELIEIKRSLVEQRNLNPQLMLESW 323 >UniRef50_Q1WSU8 DNA polymerase III, delta' subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WSU8_LACS1 Length = 330 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 129/334 (38%), Gaps = 22/334 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + A + ++ HAYL SG G GK +A+ +AKG+ C PC C C Sbjct: 9 QPFLTKHFAKLIRENKLVHAYLLSGAEGTGKIELAKWIAKGIFCLNSQNGVPCLKCSECN 68 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE D++ I KVE R L + KV++I + +S + N+L Sbjct: 69 RIENNNHPDVVTIMPDGLSIKVEQIRYLKSEFNKSGVESDRKVFIIQDAQKMSIGAANSL 128 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP ++ L T++PQKL TI+SRC + ++ L Q LE L E I Sbjct: 129 LKFLEEPSGNITAFLLTSEPQKLLPTIISRCQEVEMQQLTSGQ----LEQELISEGI--S 182 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + +LA A+ S+ +A + D + L D L+ ++ Sbjct: 183 EKNSHILANLAQ-SVVEAKKINDNE-NFNKILATVNNWYRKLLRKD------LLSFVM-- 232 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + + I + +L ++ + +++ +++ Sbjct: 233 ----IQSKIIGLIQNKEDQNLVLQVIILTVRDT-VLERFGLTEEIVFKENIDFIQQNTAQ 287 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 I + + ++ ++L + +E Sbjct: 288 IANSKLVNGLNLVVESNRKLASNISMQNMLETLT 321 >UniRef50_Q4Q732 Replication factor C, subunit 2, putative n=7 Tax=Trypanosomatidae RepID=Q4Q732_LEIMA Length = 354 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 116/305 (38%), Gaps = 36/305 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAK 60 + K+RP+T A+V Q+ + AL L G + H +LF G G GKT+ +A Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPH-FLFHGPPGTGKTTSILAVAH 81 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 L I + + E++A+ + R+ + Sbjct: 82 ELFGPDYIRSR------------------VRELNASDDRGISVVREKVKIFAQGAVSSSG 123 Query: 119 --------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 FK+ ++DE L + AL + +E+ + +F + ++ Sbjct: 124 SSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIID 183 Query: 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 224 I SRC ++ K L + H++E++ E I P +L L + G LR A+ A Sbjct: 184 PIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSA 243 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + +S + ++ G++ D + A+ E V+ A G +L++ Sbjct: 244 QKAKGDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQ 303 Query: 285 MLGLL 289 M L Sbjct: 304 MQHYL 308 >UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusobacteriaceae RepID=C7NB61_LEPBD Length = 409 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 128/342 (37%), Gaps = 42/342 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA ++RP++ D GQ+ ++ L + G +A +F G G GKT++A +++ Sbjct: 12 KPLAFRYRPKSLDDFYGQKRLVGENGILRKIIERGNFMNA-IFWGAPGTGKTTLAEIISN 70 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGR 119 +N A + V D +++ + G+ Sbjct: 71 KMNYHYEYLN-------------------------AIKASVADIKEISEKAANRFHMNGQ 105 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DE+H ++ ++LL+ LE + L +LSRCL F K L Sbjct: 106 QTLLFLDEIHRFNKLQQDSLLQDLENGNIILIGATTENPYYNLNNALLSRCLAFEFKKLS 165 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + + L++I +E+ L+ ++ EG R A+++ + I + + + + V Sbjct: 166 EKNLMEILKNINEKENFGISDDILEYISEIIEGDARQAINILE-LITNVGVEFTLEEVKE 224 Query: 240 MLGTL--------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-H 290 +L T + ++++++ ++ + + + + + G + + ++ L Sbjct: 225 ILNTKKSYHKTEDKYNTISAMIKSIRGSDPDATVYWMAKMLSGGEDILYIARRLVILASE 284 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTI--PPTDIQLYYQ 330 I + + + I I L Sbjct: 285 DIGLANPQALPIAVAGLNAIKEIGMPEARIILSEVAIYLAIS 326 >UniRef50_Q03E62 DNA polymerase III, delta prime subunit n=2 Tax=Pediococcus RepID=Q03E62_PEDPA Length = 338 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 23/344 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ + + HAYL +G G+GK +A+ +A L C + PCG C+ C Sbjct: 15 QPEIVKRFNEMIDSQHLSHAYLLTGAGGIGKKDVAQWVAMRLFCIDLQGSMPCGECEECT 74 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G+ D++EI KVE R L + G KV++I++ + ++ + N+L Sbjct: 75 RIMSGQHPDVVEIAPDGQSIKVEQVRFLKSEFSKSGVEGARKVFIIEQANKMTTSAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP V L + + TI+SR LK L + +L L E++IA Sbjct: 135 LKFIEEPSGEVTAFLLAENRSLMLPTIVSRTEIIELKPLPKD----RLIKELTEQNIAET 190 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + + + +L D + A+ T + V+ Sbjct: 191 D---ARILTRLTNDMSEIQTLVDNNWILDAHK----ALEKWFITATTGDITAFVD----- 238 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 V + A E +L M+ + ++ A +++ELA Sbjct: 239 ----VQTRVMALAKDRFYQEKILDLMMLYAMDLLELKF--DQETITYEANRRQLQELADQ 292 Query: 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + LL + +L + + VE ++ Sbjct: 293 TNVRQLLAVADVLLPLKHQLSQNLNFQSVVEKATIKICNIFKMR 336 >UniRef50_C3X9N7 DNA polymerase III subunit delta n=2 Tax=Oxalobacter formigenes RepID=C3X9N7_OXAFO Length = 355 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 117/368 (31%), Gaps = 65/368 (17%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDN 78 L ++ HA LF G G G S A AK CE CG C + Sbjct: 12 WHRKNWEYLVRL--ESKLPHALLFYGPAGTGVESFAESFAKARLCENRQPDGNACGGCQS 69 Query: 79 CREIEQGRFVDLIEI------------------------------DAASRTKVEDTRDLL 108 C +Q D +I + + + +E R L Sbjct: 70 CHWFDQNSHPDFRQILPETLEIAKGLDDPDKKTDDDSGASDKKTREPSKKIGIERIRSLA 129 Query: 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 D + + RG +V + ++ S N+LLK LEEPP + F+L T L TILS Sbjct: 130 DFINISTHRGGLRVVSVYPAEAMTTESSNSLLKMLEEPPANTLFILTTNHLDALLPTILS 189 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC + + L+ +E + G+ A +++ + Sbjct: 190 RCSKLAFPMPETSMAIGWLKEQGVDE--------AESWLAEQGGAPVTA---LEESRSGS 238 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +++ + + + ++ + + + L+ Sbjct: 239 REEMTL-----------------FLAELAAPDDSGLLRTAEKL--QKVPLSDLITWHQRW 279 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 L+ + ++L+ + +A + + +T+ ++ + R+ Sbjct: 280 LYDLLSIRLTG--RERYYPRYRQELSGMADRVDMDRLLKVLKTVNDRKRVADHPLVPRLV 337 Query: 349 VEMTLLRA 356 +E LL Sbjct: 338 LEDMLLDY 345 >UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillonellaceae RepID=D1BNC9_VEIPT Length = 433 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 114/308 (37%), Gaps = 49/308 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +Y+ L + RP + GQE + T L + I + LF G G GKT++A ++ Sbjct: 12 TYEPLPVRMRPTKLDHLYGQEKAIGKGTFLRAMVEKDTIP-SMLFYGPCGTGKTTLAGII 70 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PAR 117 AK A+ + + R ++++ + + Sbjct: 71 AKV-------------------------SNSHFVNLNATNAGIGELRTIIEDARKRVRSL 105 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + + +DE+H ++ + LL +E+ + ++ +LSR L+A Sbjct: 106 QQRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRPLLSRLRLITLEA 165 Query: 178 LDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--G 228 L + I L + +E H+ L+ + G R AL++ +QA A Sbjct: 166 LTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAAAMVPD 225 Query: 229 DGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +G ++ + + ++ G D + +++M ++ + + + G + Sbjct: 226 EGTITIEVLEKVVGRRIYTYDKKGDSHYDTISAFIKSMRGSDVQATVHYLARMIEAGEDP 285 Query: 279 EALLVEML 286 + ++ Sbjct: 286 NFIARRIV 293 >UniRef50_C4LLH9 DNA polymerase III, delta' subunit n=12 Tax=Corynebacterineae RepID=C4LLH9_CORK4 Length = 452 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 134/383 (34%), Gaps = 51/383 (13%) Query: 30 NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89 + + HA+LF+G G G++ A+ A L C+ CG C+ CR G D Sbjct: 75 SAHQSAHMTHAWLFTGPPGAGRSVAAKAFAASLMCKEETPG--CGQCEACRTALAGTHTD 132 Query: 90 LIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 ++ I V+ RD+++ P +++V ++++ L+ NALLK++EEPP Sbjct: 133 IVTIVPEGVVIPVKQVRDMIEAASRMPTTAQWRVVIVEDADRLNDAGANALLKSIEEPPP 192 Query: 149 HVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 F+L TDP + VTI SRC ++ +++++H L ++ + + + Sbjct: 193 RTVFILCAPSTDPDDVHVTIRSRCRHVYIPTPSIDEVKHIL---ADDTALGLTDKQIDWA 249 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ------------------ 248 A + G + A L A Q + + + D Sbjct: 250 ASVSGGHVGRAKRLASDDQARTQRQRALRVPEKVYQDGDAYLYTGELVASAKKEAEAATA 309 Query: 249 ------ALSLVEAM-----------VEANGERVMALINEAAARGIEWEAL------LVEM 285 L EA+ + M + + L+++ Sbjct: 310 ERDEAELAKLREALGVGAKGRGAAKAQRGSAGAMKELETKQKNRRTRMVIDLLDLSLMDI 369 Query: 286 LGLLHRIAM--VQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 GL M V + ELAR P + + +GR+ L Sbjct: 370 AGLYRDALMVSVNAGGGRVPAIHPDHANTAAELARRNTPEQLLQCVDAVRMGRELLASGV 429 Query: 344 DRRMGVEMTLLRALAFHPRMPLP 366 + ++ + R P+ Sbjct: 430 RQEGALDAMVGRLRQICVTGPVD 452 >UniRef50_C1SNL7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNL7_9BACT Length = 290 Score = 164 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 17/278 (6%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G N L+ ++HHAY+FSG G GK AR LA+ + C + PC C Sbjct: 2 IIGHGKEKDIFRNILTGDKLHHAYIFSGREGSGKKMFARELARAVICAEQVFMEPC-QCR 60 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +C+ D+ ++ S K+E R + + +P R KVY+ID H ++ + N Sbjct: 61 HCKVAAASDHPDIHVLE-ESPVKIEVARRIAGDAFMSPLSARKKVYIIDNAHTFTKEAAN 119 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 A+LKTLEEPP F L T +++ TI SRC+ L E+ +E +L + + Sbjct: 120 AILKTLEEPPADTHFFLITDKYEQVLPTIRSRCINMRFSNLTNEE----VEKVLLSQGVM 175 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ---AVSAMLGTLDDDQALSLVE 254 ++ L +A A GS+ A+ L D A +G + + G ++ + Sbjct: 176 ND--MLPEIAAQASGSVSYAMFLLDNAEETGRFAPDRDKNSLFAEIHGLDTKEKIRAYCA 233 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 +M L+ + +L +L R+ Sbjct: 234 SMY------AYMLVKYKESEDETLLDFSNYLLEILRRL 265 >UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH3_SYNAS Length = 478 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 53/314 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP+T + GQEH+L L + R+ + +F G G GKT++AR++ Sbjct: 37 SRRPLADRMRPETLDEFFGQEHLLKKHSLLRRAIEEDRLF-SVIFWGPPGSGKTTLARIV 95 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A G +A + V++ R +++ + Sbjct: 96 A-------------------------GETKAYFAAFSAVLSGVKELRKVVEEAEARWQNN 130 Query: 119 RFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R K V +DE+H ++ +A L +E + ++ +LSRC LK Sbjct: 131 RQKTVLFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVIAPLLSRCRVLVLKP 190 Query: 178 LDVEQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTD---QAIAS 227 E + L +L + + + AL L A+G R AL+ + +A+ Sbjct: 191 FSDEDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLAA 250 Query: 228 GDGQ---VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 G+GQ +S V L G + + +++ ++ + + + Sbjct: 251 GEGQSSRISRVQVEEALQKKGLQYDKSGAEHYNLISAFHKSLRGSDPDAALYWLGRMLTA 310 Query: 275 GIEWEALLVEMLGL 288 G + + M+ Sbjct: 311 GEDPLYIARRMVRF 324 >UniRef50_C9Y1I8 DNA polymerase III subunit delta' n=2 Tax=Cronobacter RepID=C9Y1I8_CROTZ Length = 342 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 121/342 (35%), Gaps = 44/342 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + RP +F +VG GR HHA L G+G ++ L++ Sbjct: 8 MKWYPW---LRP-SFEHLVGN----------WQAGRGHHAVLIHALPGMGDDALIYALSR 53 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPAR 117 C+ CG C C+ ++ G D + + S ++ RD+ + + Sbjct: 54 WRMCQQPQGQKSCGECRACQLMQAGTHPDYYQAEPEKGKSTLGIDAIRDISEKLYDRARL 113 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G KV I E L+ + NALLKTLEEPPE+ FLL +P++LP T+ SRC +HL Sbjct: 114 GGAKVVWIKEAAQLTEAAANALLKTLEEPPENTWFLLGCREPEQLPATLRSRCFSWHLAP 173 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + L I EP + R G+ AL L + Sbjct: 174 PETRYAEAWLAR-----EIQAEPSRINAALRLTGGAPAAALELLQPEQWQQRVALGE--- 225 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 + A+ + ++ +N + L + L + Sbjct: 226 -------------KITAALTSGDWLSLLPALNH-----EQAPFRLHWLAAFLMDALKWRH 267 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 A + + +LA+ P Q +L R L Sbjct: 268 GAQAAL-VNTDYPVLVAQLAQRFSPAVTQAMLDSLFRCRDRL 308 >UniRef50_Q2IQK6 DNA polymerase III, delta prime subunit n=4 Tax=Anaeromyxobacter RepID=Q2IQK6_ANADE Length = 370 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 40/374 (10%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P F++++ QE + +L + L G +HHAYLF G G GK A LLA+ NCE G Sbjct: 7 PMPFSELIAQERAVGSLRSALRRGSLHHAYLFGGPEGAGKARAALLLAQAANCEGGQAGP 66 Query: 71 -----TPCGVCDNCREIEQGRFVDLIEID------------------AASRTKVEDTRDL 107 PCG C CR+IE+G D++ + + V+ RDL Sbjct: 67 GGLREDPCGACGPCRKIERGLHPDVVVLAEERTMAKAGRWEPKSGRAPSKDIVVDQVRDL 126 Query: 108 LD-NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 +D + GR + +ID ++ + NALLKTLEEPPE +L + P L TI Sbjct: 127 VDHRLAMKRFEGRRRFVVIDPADAMNPQAQNALLKTLEEPPEDTTLVLVASSPDALLPTI 186 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRCL+ + L + + +L+ E + E ++ A + GSL A + A Sbjct: 187 RSRCLRVSFRPLPADAVAARLQE----EGVPAEE--ARVAAALSGGSLGRARAHAGDAA- 239 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAAR-GIEWEALLVE 284 + V+ DD L A + + + A + Sbjct: 240 --RRPLRA--VAQAAALRPDDAGAWLAWAADPGADPAQARGKDRDRKAEVKELAPEICEL 295 Query: 285 MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 ML L + VQ +A +E R A +PP ++ +L + L Sbjct: 296 MLVWLRDVLAVQAGAGR--LAVADLEPVTRRAAAALPPGEVVRRRGEVLRTLRALRQNAT 353 Query: 345 RRMGVEMTLLRALA 358 ++ +E ++ Sbjct: 354 SQLALERLMIGWFH 367 >UniRef50_B3ES29 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ES29_AMOA5 Length = 381 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 129/396 (32%), Gaps = 68/396 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ + L + +I HA LF G G ++A A LNC+ + Sbjct: 2 MQFADIPTHLQLKKRLIYLATSEQIPHAQLFWGPPGSACITLALAFAAYLNCKNRLPEDS 61 Query: 73 CGVCDNCREIEQGRFVDLIEI------------------------------------DAA 96 CG+CD+CR+++ ++ I D + Sbjct: 62 CGICDSCRKMKNSTHPNVKFIFPINTTKLNSETEITSNNFLKLWYPFIKTQPYGDITDWS 121 Query: 97 SRTKVE---------DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 E + + + +K+ I + NA+LKTLE+PP Sbjct: 122 HHIGAEHKQLIIPRVEAKYISQYASMQSLESSYKIIFIWLPEYFHPTTANAMLKTLEDPP 181 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 H F L + P+KL TI SR Q ++ E I L + L + Sbjct: 182 PHTLFFLVSLAPEKLLGTIRSRLQQVYIPLFSDEVIAQLLAQQYE-----LSSQKLGEVV 236 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 R AEG+L A L +++ +T+ G + + ++MA Sbjct: 237 RLAEGNLNKAYKLIEES--------NTELFEQCKG---------WMRVCYAQDFAKLMAH 279 Query: 268 INEAAA-RGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 + + L +L ++ + +VQ S + +L +T+ ++ Sbjct: 280 AENFQGIQKENQKYFLNYILHMIRQALLVQFSHENVIRIHGEERQFAEKLGQTLDYDAVK 339 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 L + + ++ L+ Sbjct: 340 KINTWLNQSHYYIDRNLNPKILFLNLSLKIAQLFQH 375 >UniRef50_A0KKI0 DNA polymerase III, delta' subunit n=2 Tax=Aeromonas RepID=A0KKI0_AERHH Length = 315 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 119/336 (35%), Gaps = 32/336 (9%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 AL+ + GR+ HA+L G G+GK +A LA+ C PCG C +C+ E+ Sbjct: 9 WHALSQTAAAGRLGHAWLLLGDPGLGKEQLAEQLARLHLCHRPERGEPCGQCHSCQLFEK 68 Query: 85 GRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 G DL + + VE R++ +Q + GR KV +I + ++ + NALLKTL Sbjct: 69 GHHPDLGTLTTESKTIGVEAIREICSRLQNSAQLGRGKVVIIPDAERMTESAANALLKTL 128 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEP LL + +L TILSRC + + + L ++ A Sbjct: 129 EEPAGDSLLLLIASQVSRLLPTILSRCHKHVCQLPAEGETVRWLAEQGHQ--------AT 180 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 R +G+ L ++ S + ++ + L+ + Sbjct: 181 LAQVRICQGAPLRVLRYIEEQQDSARRDLLESFLALAQTPTRANHVCGLLAS-------- 232 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 + + L + L Q M + +LA Sbjct: 233 -------------DTQVRLHWLQLFLCDALKTQAGCGHHQLAMPDLTALSLQLAELHSSE 279 Query: 324 DIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLRAL 357 + Q L+ + + + + L R L Sbjct: 280 KLLEAEQQLVELKMACQPGQLSNPTIHLMNWLTRWL 315 >UniRef50_A0YGP8 DNA polymerase III subunit delta n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGP8_9GAMM Length = 334 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 32/346 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + Q + + R+ HA+L +G+ G GK L L C+ + CG C Sbjct: 12 MPWQNEQWHRIIDLHGAERLPHAFLLAGSPGTGKHRFLLSLCHYLMCQAPLAGAACGKCR 71 Query: 78 NCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ + G DL + + + KV+ R +++ + + +G +K+ +I ++ + Sbjct: 72 QCQLLATGDHPDLKWLAPEEKSRQIKVDQVRAVVEFLSHTSQQGGYKIGVITPAEAMNIN 131 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK+LEEP + L + P +L TI SRC Q E+ L Sbjct: 132 AANALLKSLEEPSDKTLLFLVSDSPGQLLPTIRSRCQQVSFPVPPEEESLQWLST----- 186 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + L R A G AL L Q+ + G+ Sbjct: 187 -VVPGQAETNTLLREASGQPLTALDLLSNDGLERRKQLDGDYRVVLGGSASPLVIAE--- 242 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + + E +LV ++ LL R+ +++ P+ E Sbjct: 243 -----------KWLE------YDLEEVLVRLIVLLTRLIKIKIVPSP-LAAATNEEDSWY 284 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYA--PDRRMGVEMTLLRALA 358 +L++ + D+ ++ R + P+R++ +E L + Sbjct: 285 KLSQNVDIRDVYSLLDSIHSIRNAINRGATPNRQLVLEQILFDSCE 330 >UniRef50_Q11XT6 DNA polymerase III gamma/tau subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XT6_CYTH3 Length = 375 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 135/390 (34%), Gaps = 68/390 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+++ G + V T L N ++ + HA LF+G G +A A +NC Sbjct: 1 MQFSEIPGLQEVKTTLVNSVTNNHVAHAQLFAGVEGSAALPLALAYATYVNCLEKADGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEI-----------DAASR----------------------- 98 CG C +C + + DL I DA+S Sbjct: 61 CGKCSSCSKYNKLIHPDLHIIFPVTTNKKITKDASSEVFFPEWRETFLANPFFTFNDWME 120 Query: 99 ----------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 VE++R ++ + +KV +I + NALLK+LEEPP Sbjct: 121 VIDGENKQLLINVEESRTVVKKISMKAFEAEYKVVIIWLPETMRAEGANALLKSLEEPPA 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL T +KL TI+SR + ++ + +IR L H + + Sbjct: 181 KTLFLLITAKQEKLLTTIISRTQRVQVRLFNDAEIRQYLIQ-----HRNISEAQAKRVTY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+G++R+A+ L + + + A + + ++ + Sbjct: 236 LADGNMREAIQLLSEE-----------------DQDHESKIRDWFRACFGSKLQDMIRMS 278 Query: 269 NEAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTIPPTDIQ 326 +E + E + LL LG+ M + L M ++ + I + Sbjct: 279 DEFGSLPRELQKSLLQYGLGIFRDSLMYKEVGTDLLRVDEESSDDMVQKFSNVIDFQKVV 338 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 Q L E+ + +M T + Sbjct: 339 SLSQVLNEAHAEIERNINSKMVFMDTSFQM 368 >UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacteria RepID=C4KSW2_BURPS Length = 436 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 80/433 (18%), Positives = 150/433 (34%), Gaps = 53/433 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+T ADV+GQ H+L L G+ H+ + G GVGKT++ARL A Sbjct: 11 RPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGK-PHSMILWGPPGVGKTTLARLTAL 69 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR-GR 119 +CE + G V+D R+ ++ + R GR Sbjct: 70 AFDCEFIALSAVLG-------------------------GVKDIREAMEQARDTLNRTGR 104 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DE+H ++ +ALL +E ++ +LSR + LK+L Sbjct: 105 HTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLA 164 Query: 180 VEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQ----AIASGDGQVS 233 +++R L+ + +A + +A+ L A+G R L+L +Q A ++G + Sbjct: 165 EDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTID 224 Query: 234 TQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 V + + G DQ +L +++ ++ + + + G + + L Sbjct: 225 AAFVESAMTMNARRFDKGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLAR 284 Query: 284 EMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 ++ + I + + ND A R+ + LY Sbjct: 285 RVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGELALAQAVLYLACAA------KSN 338 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 E +P+ P + + P +A + Sbjct: 339 AGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLP 398 Query: 403 VPLPETTSQVLAA 415 + E Sbjct: 399 DGMREPRWYKPVP 411 >UniRef50_Q606M1 DNA polymerase III, delta prime subunit n=1 Tax=Methylococcus capsulatus RepID=Q606M1_METCA Length = 335 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 136/348 (39%), Gaps = 31/348 (8%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 L L GR+ L SG GVGK +A A+ L C + CG C CR + Sbjct: 14 ARRRLRAYLEAGRLPQGLLISGAAGVGKGVLADDFARRLLCASPPAEGACGTCHACRLVV 73 Query: 84 QGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D + I+ R VE R L+D + P G +V +I H ++ + N+LL Sbjct: 74 AGNHPDYLHIEPEEAGKRITVELVRRLIDRLSLKPQYGASRVVVIRPAHAMNMAAANSLL 133 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP H FLL + P +LP T+LSRC + ++ + E+ L E Sbjct: 134 KTLEEPDPHTLFLLISERPAQLPATVLSRCQRLDVRLPEREEALRWLRGQGVGE------ 187 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 + L A G+ A+ L + ++ A+L + Sbjct: 188 -EAEALLAMAGGAPVRAVELHGGGDLAQRRRMLFDDWVAVL-----------------RD 229 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG--NDMAAIELRMRELAR 318 +A+ + E +L+ + G + + + + A++ A +E +R+ A Sbjct: 230 ESDPLAVAERW--AKEDGETVLIWLRGWIADLIRISSTEASVPLRLANADLEPGLRKAAA 287 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + + + R+ L +R++ +E L+ PR Sbjct: 288 GLDLRALFACLDGVDAARRNLEGQANRQLVMEEILINWNRSRPRGARH 335 >UniRef50_UPI0001C37C00 DNA polymerase III, delta prime subunit n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C00 Length = 326 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 58/347 (16%), Positives = 124/347 (35%), Gaps = 28/347 (8%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 ++ G E++L+ +AN + + + +F G +G GK +A+ L CE+ + PCG Sbjct: 2 KNIYGNEYLLSTIANMIKNDKAAQSVIFCGEKGSGKRLMAKYYTMSLMCESPVDGRPCGK 61 Query: 76 CDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPAR-GRFKVYLIDEVHML 131 C+ C ++ G D+I + + VE R +++ P KV + + Sbjct: 62 CNACHNVDMGYHPDVIYAPTSGKLGGYSVETARAVINQAYIKPNNSSGRKVCIFTDCKNT 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N LLK +EEPPE+ F+ TI+SRC+ F + + E+ + L Sbjct: 122 DPRTQNVLLKLIEEPPEYAYFIFTCNSRTDFLPTIISRCVCFGVSTVTDEEAKKALIE-- 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 P + R G++ ++ Sbjct: 180 ----DDCTPEEAESAVRCFHGNIGMCGDYIRNEELRKQVDLTK----------------G 219 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L ++++ + + A + + + + ++ + L+ A++ +A + Sbjct: 220 LADSIIRKDEYSLNAQLFALGSSRNDVKNVMTMLDKLVRDAAVLGRDKSAELIGCS--RE 277 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 L+ I P + + + K + + + Sbjct: 278 TAESLSGRITPYQAVRIHNKIELANKAVDCNVTIPLAMAALAAEITE 324 >UniRef50_Q0VQM5 DNA polymerase III, delta prime subunit n=2 Tax=Alcanivorax RepID=Q0VQM5_ALCBS Length = 335 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 124/331 (37%), Gaps = 33/331 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + L + + GR+ HA L SG +G+GK +A LA+ L CE PCG C Sbjct: 12 CPWHSDAMAQLLDQHARGRLPHALLLSGPKGIGKLRLAESLAQTLLCEKPSAGLPCGHCQ 71 Query: 78 NCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ G DL + + K++ R L+ ++V +I L+R+ Sbjct: 72 GCQLSTAGTHPDLYRLSPEEKSKTIKIDQVRKLVAFATRTAQYSGYRVAIISPAEALNRN 131 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLKTLEEP LL + P L TI SRC Q L E L+ + Sbjct: 132 AQNALLKTLEEPGTQTLLLLVSDQPTLLLPTIRSRCQQRILPLPVKEHALQWLQSQVG-- 189 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + L AA+G+ AL+L + ++ V G QA ++ Sbjct: 190 ------ESAASLLDAAQGAPLRALALEQAEWFADRTRLLDTLVRVAEGRQSVAQASPVL- 242 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 + + + G L R + S + + + + Sbjct: 243 -------------------AKHDPTEMASVIYGWLSRSLNQRFSGQQSSDAL--LAPLLE 281 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L + +PP + Q +L GR+ L + Sbjct: 282 RLNKAVPPARLLRAAQRVLEGRRALLSGANP 312 >UniRef50_B7FP94 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FP94_PHATR Length = 350 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 33/297 (11%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + ++RP++ +V Q V+ L N ++ GR+ H L G G GKTS+A L + L Sbjct: 16 RPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPH-LLLYGPPGSGKTSVALALCRQL- 73 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-NVQYAPARG---- 118 ++E++A+ + R+ + A+G Sbjct: 74 -----------------WHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDM 116 Query: 119 ------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 FK+ ++DE ++ + AL + +E + +F+L ++ + SRC + Sbjct: 117 ENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAK 176 Query: 173 FHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA--IASGD 229 F ++L ++ +LE I NE++ E L + A+G +R A++ +A+G Sbjct: 177 FRFQSLPPSSMKARLEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGG 236 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 +V A++ + G L A++ + + + ++ +A G + LL ++ Sbjct: 237 AKVDKAALAEIAGLPPPAIVDMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSALV 293 >UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organisms RepID=Y508_THEMA Length = 599 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 115/298 (38%), Gaps = 37/298 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + L+ RP+ F D VGQ+H+ L L G + + L G G GKTS+ LL Sbjct: 4 SEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSIL-YGPPGSGKTSVFSLL 62 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 + N E + +++ V + +++L + G Sbjct: 63 KRYFNGE-------------------------VVYLSSTVHGVSEIKNVLKRGEQLRKYG 97 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DE+H L+++ L+ +E + + +LSRC + K L Sbjct: 98 KKLLLFLDEIHRLNKNQQMVLVSHVERGDIVLVATTTENPSFVIVPALLSRCRILYFKKL 157 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAV 237 E + L+ +I E + + R +EG R L+ + A + +V+ + + Sbjct: 158 SDEDLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTLEIVHQAFKNKRVTLEDL 217 Query: 238 SAMLGTL-------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +LG + D A + +++M ++ + + + G + + M+ Sbjct: 218 ETLLGNVSGYTKESHYDFASAFIKSMRGSDPNAAVYYLVKMIEMGEDPRFIARRMIIF 275 >UniRef50_C5V2Y1 DNA polymerase III, delta prime subunit n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2Y1_9PROT Length = 331 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 69/359 (19%), Positives = 125/359 (34%), Gaps = 48/359 (13%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDN 78 Q+ T L R LF G +G+GK +A A+ L C+ CGVC + Sbjct: 7 WQKDDWTRLQAL--RERASQGLLFQGMKGIGKLDLAISYARALLCQHPSGNGFSCGVCPS 64 Query: 79 CREIEQGRFVDLIEIDAASR-------------TKVEDTRDLLDNVQYAPARGRFKVYLI 125 C QG D + S V+ R L D + +G +V +I Sbjct: 65 CHWFIQGSHPDFRMVQPESETEEVEAGKKPSRQISVDQIRALSDFMGMTAHQGGRRVVII 124 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ ++ NALLK LEEPP + F+L T P+ L T+LSRCL F + A D Sbjct: 125 HPAEAMNTNAANALLKNLEEPPPGLLFILVTHKPEVLLPTLLSRCLSFSVAAPDAATATA 184 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L + + + L A S A + A+ G + + L Sbjct: 185 W----LAAQRVKNPAEVLAY----AGFSPLQA-----KLAANEGGMDVREKLLRALRQPG 231 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 ++ +A+ + E ++ + + + +++ + Sbjct: 232 AMDVFAMADAL-----------------QKTEQVLVVQWLQQWCYDLIAQKMAGS--LRY 272 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + + + L + ++ L ++E + + ++ E L + Sbjct: 273 HPSEQAAISALVSNLDAINLARLQSYLQTAKRESQHTLNPKLFFESLLFTYCQLTRQSS 331 >UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-like ATPase n=2 Tax=Brachyspira RepID=C0R1V7_BRAHW Length = 431 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/376 (15%), Positives = 136/376 (36%), Gaps = 61/376 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 +++ +A + RP T +V GQ H+L L + +I + +F G GVGK+++A ++ Sbjct: 10 NFKPMAERMRPLTIEEVFGQHHILDKNKTLRKMIDNDKIT-SMVFFGPPGVGKSTVASII 68 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK + I+++A V + R+ + + Sbjct: 69 AK------------------------KTKSEYIKLNAVLSN-VSEIREAIKKAEKNLENR 103 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + IDE+H ++ +ALL +E + L +LSR + F + L Sbjct: 104 KKTILFIDEIHRFNKSQQDALLPAVENGSIILIGSTTLNPYFYLNNALLSRIMLFEFRNL 163 Query: 179 DVEQIRH-QLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIAS----- 227 D I+ L+ I ++ + E A+ L+ R + G +R A + + + + Sbjct: 164 DDNDIKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQIDE 223 Query: 228 --GDGQVSTQAVSAMLG--------TLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++ + V + + + ++++ ++ + + G + Sbjct: 224 SKEKLTITEEIVRDVTSKQSISFDEDEHYNTISAFIKSVRGSDPNAAIYYLARMLESGED 283 Query: 278 WEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ---------- 326 + + L I + + + + + + +I + IP ++ Sbjct: 284 PRYVARRLCILASEDIGLAEPNAMNIASSLVSIIDFIGMPEGRIPLAEVTIYLALCPKSN 343 Query: 327 LYYQTLLIGRKELPYA 342 Y + +++ Sbjct: 344 SAYNAINKAIRDIRNG 359 >UniRef50_A4SFZ4 DNA-directed DNA polymerase n=11 Tax=Chlorobiaceae RepID=A4SFZ4_PROVI Length = 391 Score = 162 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 144/403 (35%), Gaps = 61/403 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-- 70 ++ V+GQ+ + L + L GR+ HAYLF+G G GK +A LAK L+C + T+ Sbjct: 1 MSWNTVIGQQQQVRVLRSALLGGRLAHAYLFTGPDGAGKEMVAFELAKALSCTSSGTSPE 60 Query: 71 TPCGVCDNCREIEQGRFVDLI--------------------------------------- 91 CG+C +CRE+E ++ Sbjct: 61 GACGLCADCREMEALLHPNVEYLFPVESALLEGSDSPKKDNRKFTEAKERYDTLLEQKKA 120 Query: 92 ------EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 +D + E L + P G KV++I + L + N LLK LEE Sbjct: 121 NPYFTPCMDRSMGILTEQVIQLQQKASFMPREGSRKVFIISQADRLHPSAANKLLKLLEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP H+ F+L ++ P+ L TI SRC + + + ++R + E+ P + Sbjct: 181 PPPHILFILVSSRPESLLPTIRSRCQEIIFQRIPERELRSWM----EEQRTDIAPDERES 236 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 + +A+ GSLR A L + + + T D S+ ++ + + + Sbjct: 237 IVKASRGSLRRAWELM-----LNRMEPGFEPAEKAIRTKALDYLRSI---LMAGHFHKAI 288 Query: 266 ALINEAAAR--GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 E E + +L L ++PA + I + AR P Sbjct: 289 LSAEEQTKNLSRQELILFISSILLFLQDAMHRSINPAFANLNNPDIADAVDRFARNFPNP 348 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 D+ + L + + + + Sbjct: 349 DLMAISTLAEESIRSLERNAGSLLVMAAFTSQLRPLIKKNQEN 391 >UniRef50_C6XXP7 DNA polymerase III gamma/tau subunit n=4 Tax=Sphingobacteriaceae RepID=C6XXP7_PEDHD Length = 382 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 127/383 (33%), Gaps = 72/383 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++ GQE+V L ++ RI HA LF G G +A A+ +NC Sbjct: 1 MQFKEITGQENVKQQLLQTVAENRISHAQLFLSCDGSGALPLAIAYAQYINCLDKQENDS 60 Query: 73 CGVCDNCREIEQGRFVDLIE--------------------------------------ID 94 CG+C +CR+ E+ DL ++ Sbjct: 61 CGLCSSCRKYERYIHPDLHFSYPFFASKDVKTAVDVLEEWRSMLLADAYFDIDIWRSKLN 120 Query: 95 AAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 A + + + D++ + Y KV ++ L + NALLK +EEPP++ Sbjct: 121 AENKQANINIAECHDIIKKLSYKAFEAHTKVLIMWLPEYLDKEG-NALLKIIEEPPQNTL 179 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 F+L + +++ T+LSR + L + + L E + A+ Sbjct: 180 FILVANNQEQILSTLLSRTQIVKIPKLSHATVENYLM-----EAHGLPENQATEYSFLAD 234 Query: 212 GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 G+L +A SL + + +D A + + G RV+ L Sbjct: 235 GNLIEAKSL--------------------VANIHNDNADKFADWLRMGYGNRVLDLAAFT 274 Query: 272 AAR----GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART-IPPTDIQ 326 + L + L +++ L + + ++LA + Sbjct: 275 EQAAGWGRENQKNFLKYGISFLRECSLLLTGADDLVKLPSRVLETAKKLATHVLDLNMAD 334 Query: 327 LYYQTLLIGRKELPYAPDRRMGV 349 L + + ++ Sbjct: 335 AIISELEQAHYHIERNANPKILF 357 >UniRef50_P37540 DNA polymerase III subunit delta' n=24 Tax=Bacillaceae RepID=HOLB_BACSU Length = 329 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 128/342 (37%), Gaps = 29/342 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V+ L N + R+ HAYLF G +G GK A LLAK C G A PC C NC+ Sbjct: 12 QPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLDAALLLAKSFFCLEG-GAEPCESCRNCK 70 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 IE G DL + K + L + K+Y+I ++ ++ N+L Sbjct: 71 RIESGNHPDLHLVQPDGLSIKKAQIQALQEEFSKTGLESHKKLYIISHADQMTANAANSL 130 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP + +L T PQ+L TI+SRC + L + I +L Sbjct: 131 LKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQPKAIEDRLIEQ------DVS 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 P +LLA ++ + S + + + + + L E + + Sbjct: 185 PHMARLLANMTN-------NVAEAVELSRNDEFAE----------SRAKVIKLYEVLHQR 227 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 G + ++ E L +L + + +Q+ + +++ Sbjct: 228 KGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKL-IYQDLFQSIKQH 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 A + +L +K L + + +E +L Sbjct: 287 ALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLMLQE 328 >UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacteria RepID=A8ZU04_DESOH Length = 459 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 116/310 (37%), Gaps = 51/310 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+ D+ GQ HV + L + L G + + + G G GKT++AR+LA Sbjct: 17 RPLADRMRPEKLEDLAGQPHVTGPDSLLRSALEKGTLF-SMILWGPPGCGKTTLARILA- 74 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 G +A + V++ R++++ + + Sbjct: 75 ------------------------GMTGAAYVQISAVLSGVKEIREVVEAARRRRGEFQK 110 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH ++ +A L +E + ++ ++SRC L + Sbjct: 111 DTILFVDEVHRFNKSQQDAFLPHVESGLVTLIGATTENPSFEVIPALMSRCRLIVLNPVP 170 Query: 180 VEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 E +R L L + + EP AL LA A+G +R AL+ + A Sbjct: 171 EEAVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALADGDVRTALNNLEAAALLRPAGT 230 Query: 231 --QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ V L G + +L +++ ++ + + + + G + Sbjct: 231 GVTITLAGVEQALDKKALLYDKSGEEHYNLISALHKSLRGSDPDAAVYWLERMLSGGEDP 290 Query: 279 EALLVEMLGL 288 +L M+ Sbjct: 291 FYILRRMVRF 300 >UniRef50_B3PHI9 DNA polymerase III, delta prime subunit n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHI9_CELJU Length = 337 Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 30/324 (9%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 LA ++ ++ HA + +G RG+GK A LA+ L C+ CG C C + Sbjct: 16 WQQLAQLIAARKLPHALMLAGPRGIGKRHFAEALAQLLLCQAPREGGACGQCRGCELNKA 75 Query: 85 GRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 DL+ ++ KV+ R+L D + +KV +++ ++ ++ NALLK Sbjct: 76 ATHPDLLWLEPEEAGKAIKVDQVRELTDALGKTAQLSGYKVVVLEPAEAMNTNAANALLK 135 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 +LEEP + +L + P + TI SRC + EQ+ L +L I + Sbjct: 136 SLEEPAANTLLILVSHTPSAVLPTIRSRCQLRAMAMPRQEQVVRWLSPLLVGRDIPADE- 194 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L AA G+ ALSL + Q Q LG L A+ L + Sbjct: 195 ----LLSAARGAPLIALSLLEGDALEQREQQLQQLTRMSLGQLS---AIELAANWHTGDA 247 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 +M LG LH +A + +RE + + Sbjct: 248 PGLMEWF-----------------LGFLHTLARWRAGVDDPQ--AQRWPTELRERLQGVE 288 Query: 322 PTDIQLYYQTLLIGRKELPYAPDR 345 + + Y + +L ++ L + Sbjct: 289 LSLLHRYLEKVLHAKRLLLSGANP 312 >UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta RepID=B2W7D9_PYRTR Length = 534 Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 66/361 (18%), Positives = 118/361 (32%), Gaps = 46/361 (12%) Query: 5 VLARKWRPQTFADVVGQEHV--LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 LA + RP + V GQE V L + GR+ + + G G GKT+IARL+A Sbjct: 118 PLAERMRPMSLEHVYGQELVGPKGILRAMVDEGRLP-SMVLWGRPGTGKTTIARLIA--- 173 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRFK 121 ++ T++E R + GR Sbjct: 174 ----------------------NTSGSRFVEINSTSTRLEQVRAIFTEASQDLRLTGRKT 211 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + DE+H S+ +A L +E + K+ +LSRC F L L + Sbjct: 212 IVFCDELHRFSKTQQDAFLGPVESGTITLIAATTENPSFKIISALLSRCRTFTLDDLKED 271 Query: 182 QIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ------- 231 + LE + E + L AR ++G R AL+L + A++ + Sbjct: 272 DLVKILERAMTAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLANQPDMTKEKI 331 Query: 232 ---VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 ++ V G D +L +++ ++ + + G + + ++ + Sbjct: 332 QQSLTKTLVYDRAGDQHYDSISALHKSIRGSDPHASLYYLARMLESGEDPRYIARRLIVV 391 Query: 289 L-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL---LIGRKELPYAPD 344 + + S +L A + I + L A D Sbjct: 392 ASEDVGLADNSMLSLATATYAACENIGMPECRINLAHAVTALTLAPKSTRVYRGLKNAID 451 Query: 345 R 345 Sbjct: 452 A 452 >UniRef50_UPI00016C36A8 DNA polymerase III, delta prime subunit n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C36A8 Length = 338 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 129/333 (38%), Gaps = 20/333 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TAT 71 ++ + GQ A L GR+ H+YL G GVGK AR LAK CE T Sbjct: 1 MSWDRIRGQHAPRNTFAAALEAGRLAHSYLLVGPDGVGKRQFARELAKAFLCEHPPAKLT 60 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 C C C ++ G DL+ + V++ R + P RG K+ ++++ Sbjct: 61 ACDRCPACAQVNVGTHPDLLFLRTPEDKHELPVDEMRAFCAQIALKPTRGPRKIGIVEDA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N+ LKTLEEPP+ LL T + TILSRC L L+ Sbjct: 121 DDFNASSANSFLKTLEEPPQGALLLLIGTSIDRQLSTILSRCQIVRFAPLSPAD----LK 176 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 +L E+ I +P LA+ GS+ AL+L D +I ++ + G + Sbjct: 177 AVLAEQGID-DPVKRDRLAKLGAGSVTRALALDDDSIWQVRQKL-------LEGLMSPRP 228 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 + + E E A + + +L ++ + + L AA+ AA Sbjct: 229 PFQQLADVWARFNEEAGK---ETAPQRLRTSLVLQFLIEAVQNALKLSL-GAAVPELDAA 284 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 +R A I + L+ + Sbjct: 285 EAPLLRAFADRIGAAGLMELLDALVEADFHVER 317 >UniRef50_C6VLN8 DNA polymerase III subunit delta' n=3 Tax=Lactobacillus plantarum RepID=C6VLN8_LACPJ Length = 339 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/348 (18%), Positives = 123/348 (35%), Gaps = 27/348 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q +L A + ++ + HAYLF+G G G+ +A +A+ L C P G C+ C Sbjct: 15 QPRLLAAFKHIIAQNHLAHAYLFAGMEGAGQPELAHWIAQRLFCLHINDGEPDGTCEECV 74 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I G D++ + + V+ R L + G K+++I++ ++ + N+L Sbjct: 75 RIANGSHPDIVTVAPEGQRIHVDQVRYLKAEFSKSAVEGNRKLFIINDAEKMTASAANSL 134 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK +EEP +V LL TT+ Q + TI+SR L+ + L+ + IA Sbjct: 135 LKFIEEPSGNVTALLLTTNKQLMLPTIISRTQVIEFPPLNAQA----LQQTFEQAGIAPN 190 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + R S+ A +L + V+ Sbjct: 191 Q---AQMLRGLTNSVTQAQALLADDWL----------------PQAAQALWRWFDQAVKG 231 Query: 260 NGERVMALINEAAARGIEWEA---LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + +A+ + + +L + L + + A + + L Sbjct: 232 DPRSFVAVQVNLVGLAKDADHQLVMLDLIAALFQDLLQLHFEVATTALTFGQYQKELAGL 291 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMP 364 + + + L +++L + +E L+ Sbjct: 292 TAEVSDEQLIAATELALTAKRQLASNISFQNVLEGLTLKLWPIFQTNA 339 >UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepID=Q47N55_THEFY Length = 441 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 111/308 (36%), Gaps = 47/308 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S++ LA + RP+T +VVGQ H+L + L + A L G G GKT++A ++ Sbjct: 16 SHEPLAVRMRPRTLDEVVGQRHLLGEGSPLRRLVEDD-APMALLLWGPPGTGKTTLATVV 74 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PAR 117 ++ +A + V+D RD++D + R Sbjct: 75 SRA-------------------------TRRRFVELSAVTSGVKDIRDVVDEARRELGMR 109 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G + +DEVH S+ +ALL +E + +LSR L L A Sbjct: 110 GVHTLLFVDEVHRFSKTQQDALLPAVENRWVSFIGATTENPFFSVISPLLSRSLLLTLHA 169 Query: 178 LDVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 + IR + L +E AL L R A G R +L+ + A Sbjct: 170 HSDDDIRTVVRRALTDERGLAGRYTLTEEALHHLVRLAGGDARRSLTYLEAAALVAGDRT 229 Query: 231 QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 +++ V G D + +++M ++ + + + G + Sbjct: 230 EITVADVERAADRTAVRYDRSGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDPRF 289 Query: 281 LLVEMLGL 288 + ++ Sbjct: 290 IARRLVVH 297 >UniRef50_A7BV86 DNA polymerase III, delta prime subunit n=1 Tax=Beggiatoa sp. PS RepID=A7BV86_9GAMM Length = 334 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 120/331 (36%), Gaps = 30/331 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVC 76 + + + + + + R+ HA L SG +G+GK A+ LA+ L CE CG C Sbjct: 5 LPWHDALWQQIQSRVMQNRLPHALLLSGPQGMGKALFAQRLAENLLCEQPQADGQTCGHC 64 Query: 77 DNCREIEQGRFVDLI---EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C + DL ++A + V R+L+ + R ++ +++ ++R Sbjct: 65 KPCHLLLANTHPDLFKVEPVEAGKQISVNQIRELIQFSTLTASYNRHQIIIVNPAEAMNR 124 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 ++ N+LLK LEEP +L + Q L TI SRC + + + L + L Sbjct: 125 NAANSLLKLLEEPSSDTVIMLVSHQYQALLATIRSRCQRIDFSHPEPTVTQTWLHNQL-- 182 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 + + +++ L+L++QA + T G + Sbjct: 183 ---------------STKINIQLLLNLSNQAPLAALALAQTD------GMAKRQILFESL 221 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + + + + +E +L ML I ++ + + Sbjct: 222 TQLPTGK-DDPIRIAESWNQ--LEVVQVLEWMLLWTMDIIRYGITEQRHSIINQDHQQTL 278 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + LA+ P + + + + + Sbjct: 279 QRLAKQFNPLKLFELLDLQTEAYRLIMGSTN 309 >UniRef50_Q8SSG6 DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG6_ENCCU Length = 283 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 46/281 (16%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP++ G EH+ L N GR H L G G GKT+ A LLA Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNS--SGRGHPNLLLYGPPGTGKTTFAHLLA------ 54 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 +E++A+ + R+ + YA G+ K ++ Sbjct: 55 ----------------------SQKLELNASDERGISVIREKIK--VYASTLGKDKTVIL 90 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE L+ + + L + +E+ + +F+ T P K+ + SR + + Sbjct: 91 DECENLTSDAQHCLRRVIED-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTPTE----SK 145 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 LE+I ++E + ++ + + LR A+++ G + +G + Sbjct: 146 ILENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQGVAPLGSFCI-----EEAVGAVP 200 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + E + RV+ + E G L+ ++ Sbjct: 201 QKTV----DMFWEVDRPRVVEYVREFLREGYSALQLIHQLA 237 >UniRef50_C7MQK6 DNA polymerase III, delta prime subunit n=13 Tax=Actinomycetales RepID=C7MQK6_SACVD Length = 406 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 129/399 (32%), Gaps = 71/399 (17%) Query: 13 QTFADVVGQEHVLTALA------------NGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + ++ +VGQE + L+ G + HA+LF+G G G++ AR A Sbjct: 13 RVWSQLVGQEPAVETLSAAAESAAALVSGRTTDPGSMTHAWLFTGPPGSGRSVAARTFAA 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 119 L C CG C C G D+ + V + R L+ P GR Sbjct: 73 ALQC---TVDAGCGRCQGCHTTLAGTHADVKLVVPEGLSISVSEMRALVQAAARRPTTGR 129 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKA 177 +++ +I++ L+ + NALLK +EEPPE FLL P + +TI SRC +L+ Sbjct: 130 WQIVIIEDADRLTEGASNALLKAVEEPPERTVFLLCAPSDHPDDISITIRSRCRTVNLRT 189 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 E I L E +P + A G + A L A + Sbjct: 190 PSPEAIATVLV-----ERDGIDPERARWAASVCGGHVGRARRLATDENARAR---RAAVL 241 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE-------------------- 277 LG + + ++ + + Sbjct: 242 RIPLGLRRAEDVFRCADELISTAEADATEVSKARDEAEQDALRTAMGSGGTGKGVAAAKR 301 Query: 278 ------------------------WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + L+++ G + ++ A N + + Sbjct: 302 AADAAVRALEKKQKSRATRTQRDTLDLALMDLAGFYRDVLVLSSGSDAALN-HPDVAEQA 360 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 E AR P + +L R + + R+ VE Sbjct: 361 AEAAREWTPVSTLRRLEAVLACRDAIAWNVKPRVAVEAM 399 >UniRef50_A0L8T4 DNA polymerase III, delta prime subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8T4_MAGSM Length = 343 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 110/238 (46%), Gaps = 18/238 (7%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--- 70 F ++GQ+ + AL + GR+ H LF G GVGK AR L + C+ Sbjct: 3 RFEQIMGQQEAMDALTGAVRTGRLAHGLLFYGPAGVGKRLTARALVRRTLCQQVAEGALN 62 Query: 71 -------TPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRF 120 CGVC +C+ +E G DL+ ++ +R +V+ R+L V P + Sbjct: 63 AAGDRLLDGCGVCASCKRVEGGGHPDLLWMEKEQGRTRLRVDQIRELAQFVALTPLLSPY 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 KV +IDEV +++ + NALLKTLEEPP H +L T P L TI SRC LD Sbjct: 123 KVAVIDEVSLMNASAANALLKTLEEPPPHSLLILTTCTPGALLPTIRSRCQAVRFVPLDE 182 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L H + EP ++ A GS+ AL L D + + ++ V Sbjct: 183 QTLGQLLRQ-----HTSLEPGMVESAMEMAGGSIGRALELCDGTLLNQRQELWQGLVL 235 >UniRef50_A0M6J3 DNA polymerase III subunit delta' n=20 Tax=Bacteroidetes RepID=A0M6J3_GRAFK Length = 385 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 68/398 (17%), Positives = 128/398 (32%), Gaps = 66/398 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++G H+ L RI HA LF+G G G +A A+ + C+ Sbjct: 1 MLFNDIIGLPHIKNHLTTTADRNRIPHAQLFTGKSGSGALPMAIAYAQYILCKNTGGEND 60 Query: 73 CGVCDNC-REIEQGRFVDLIEIDAA----------------------------------- 96 C + DL Sbjct: 61 SNTAAGCNLKFNNHSHPDLHFAFPVATNDKIKSQPISSHFLDEWRNFLKTNPYGSLYDWY 120 Query: 97 ---------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + V + ++++ ++ G FKV +I ++ + N LLK +EEPP Sbjct: 121 QSLGIEKKQGKIGVHEAQNIVKSLSLKAYEGGFKVMIIWMAEKMNMEAANKLLKLIEEPP 180 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 FLL + D +++ TI SRC + L I + L +E+ P + +A Sbjct: 181 NKTVFLLISEDEEQIIQTIRSRCQSLYFPPLSEADIANTL---AEKEN--CSPAIAKKIA 235 Query: 208 RAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML-GTLDDDQALSLVEAMVEANGERVM 265 A G A+ + + V + + L LV Sbjct: 236 HQANGDYTKAIHILRKNSGDEQFEAWFISWVRSAFKAKGNKSTVLELV------------ 283 Query: 266 ALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALG-NDMAAIELRMRELARTIPPT 323 + E AA G E ++ L+ + + ++ +L + +A + ++ A + Sbjct: 284 SWSEEIAALGRETQKSFLLYCIDFFRQSLLLNYKAKSLVYLEPSAEKFKLENFAPYVHGN 343 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 +I L + + ++ + ++ F Sbjct: 344 NITEITSALETAIYHIERNGNAKIILTDLSIKLTRFLH 381 >UniRef50_B7XHK9 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHK9_ENTBH Length = 303 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 131/354 (37%), Gaps = 58/354 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y L K+RP ++ G +++ L + L + LF G G GKT+ + L Sbjct: 1 MEYTKLTEKYRPTDLNNICGNTNIIQCLKSFSLLD-FPN-MLFYGPPGTGKTTTIKALI- 57 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + ++++E++A+ + R+ + + Sbjct: 58 ---------------------HNKINPINILELNASDDRGINIVRNQIKQFAETSTQ--L 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ ++DE +SR + NAL + +E+ E+ +F L + + I SRC +F + Sbjct: 95 RLVILDEADSMSRDAQNALRRIMEDY-ENCRFCLICNYVKNIIDPIQSRCAKFKFSNMTD 153 Query: 181 EQIRHQLEHILNEEHIAHEP-RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E+++ I+N+E+I E + +L AA G +R ++ Q I ++ + V Sbjct: 154 EEVKCHALEIINKENIVIEDIEGISMLVSAANGDMRKLINDI-QGIKKTYNKIDKKHVQE 212 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 LG +D DQ + ++ IE E +L E+ +I ++L Sbjct: 213 FLGIVDQDQINKICGWLLNPEI-SFKNAYMAILNEDIECETILQEI---FKKILTLKLDN 268 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + Q L L + ++ + + Sbjct: 269 KFV-------------------------IIQGLSEIEYALAKGCNDKIQLSALV 297 >UniRef50_Q2NU34 DNA polymerase III delta prime subunit n=2 Tax=Gammaproteobacteria RepID=Q2NU34_SODGM Length = 332 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 123/362 (33%), Gaps = 47/362 (12%) Query: 1 MSYQVLAR-KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 M + +R + HHA L G G+ + L+ Sbjct: 1 MKWYPWLNGPYR---------------QILARYQQASGHHALLLHSQPGNGEAPLCYALS 45 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPA 116 + L C + CGVC +CR + G D + + V++ R ++D+V Sbjct: 46 RWLMCRQPDGSKSCGVCHSCRLMMAGNHPDFYQPEPEKGRQSLGVDNIRAIIDSVYGRAR 105 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 +G KV + +L+ + NALLKTLEEPP FLL P +L T+ SRCL + L Sbjct: 106 QGGVKVVWLPHAELLTEQAANALLKTLEEPPTDTYFLLGCQTPSRLLPTLRSRCLYWPLP 165 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 A D L +P + R + A +L + Sbjct: 166 APDEALGLRWLRQAG-----FDDPLSACTALRLCANAPLAAEALLQPGRWQERLALCA-- 218 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 +L EA V + ++ ++N + + L +L LL Q Sbjct: 219 --------------ALYEAHVSGDFLTLLPVLN---WYKKD-DGPLYWLLSLLTDALKWQ 260 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLL 354 A A + LA P + +Q L ++ +R + + LL Sbjct: 261 QGAQASL-VNADRAELVAALAARWPAGVLHAQWQLWLQCLRQWQEISGVNRELLLTHYLL 319 Query: 355 RA 356 Sbjct: 320 NW 321 >UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E131_METI4 Length = 454 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 120/356 (33%), Gaps = 55/356 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 L+ K RP+T ++VGQE +L L + RI + + G G GKT++A ++AK Sbjct: 21 PLSTKMRPRTLEELVGQEDILLPGKPLRRLIDADRI-QSLILYGPPGTGKTTLAEIIAK- 78 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-RGRF 120 + A V D R ++ + Sbjct: 79 ------------------------KTKSFFARLNAVEAGVSDIRKVIGQAALRWKKEKKH 114 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ + LL LE + L +LSR F K L Sbjct: 115 TLLFIDEIHRFNKSQQDVLLPDLETGIIKLIGATTHNPCFYLTAPLLSRSHLFEFKPLSK 174 Query: 181 EQIRHQLEHIL-NEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-- 231 + + L L ++E ++ E A + L EG R L+ + A+ S + Sbjct: 175 QSLETLLLRALTDKERGLGNYEVSIEKEAKEFLLNLCEGDARRLLNYLEIAVLSSLQENQ 234 Query: 232 -----VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 ++ + + ++ D + ++++ ++ + + + + + G Sbjct: 235 PAPVILNIETIQNLVQKKIPRYDHGEDEHYDTISAFIKSIRGSDPDSALYWLAKMISAGE 294 Query: 277 EWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 + + ++ L I + + ++ IP LY Sbjct: 295 DPRFIARRLVILATEDIGLANPQGLPIATAAFEAIEKIGMPEGRIPLAFATLYLAL 350 >UniRef50_C8WG75 DNA polymerase III, delta prime subunit n=4 Tax=Coriobacteriaceae RepID=C8WG75_EGGLE Length = 383 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 73/376 (19%), Positives = 125/376 (33%), Gaps = 38/376 (10%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE---TGITAT 71 F +++GQ V L ++ G++ HAYLF+G G KT A A+ + C +G Sbjct: 5 FENILGQPQVREFLRATVAQGKVSHAYLFTGPAGSNKTMAAYAFAQAVLCPKGASGPRGG 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG CD CR I + + D+ VE RD++ + AP + KVY++D V Sbjct: 65 NCGACDACRRIMRKKHPDVRYFAPEGAGGYLVEQIRDIVADTSMAPIQAHKKVYILDRVD 124 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L + NA LKTLEEPP V +L + + TILSRC + + + + Sbjct: 125 LLGVQAANAFLKTLEEPPSDVVLILLARTRESVLPTILSRCQVVPFRTIPASEAAGIIVQ 184 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLT---DQAIASGD-----GQVSTQAVSAML 241 + ++ A +GS+ A+ ++ G + + Sbjct: 185 -----NTGASREQARMAVEACDGSITRAVEFLKSNERLAFRTRVLEVLGCLRKADDWDAV 239 Query: 242 GTLDDDQA-----LSLVEAMVEANGERVMALINE--------------AAARGIEWEALL 282 G + L + A E + + A L Sbjct: 240 GFASELVVLVKAPLDVARAEQEQELAENADFLAKSAIRQIEARNKRQLTAKTFESLRQLT 299 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + L + + + E A + + + Y Sbjct: 300 AIVRSWLRDVM-AVCAETPELVINVDARASVMEAAEATDEARAAAALAAVRRCDEAISYN 358 Query: 343 PDRRMGVEMTLLRALA 358 ++ L Sbjct: 359 VSPETCIDAMLFEIRE 374 >UniRef50_A1ZNC9 Putative DNA polymerase III, delta subunit n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNC9_9SPHI Length = 376 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 70/395 (17%), Positives = 132/395 (33%), Gaps = 67/395 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQ + L + + + HA +F G G +A A+ ++CE Sbjct: 1 MLFKDIIGQTEIKQQLIHAIQSNHVAHAQMFWGAEGGAALPLALAYAQYIHCENKQATDA 60 Query: 73 CGVCDNCREIEQGRFVD-----------------------------------------LI 91 CG C C + ++ D L Sbjct: 61 CGTCAACIKSQKLIHPDLSFVFPVATTKKISSKPVSKDFMEEWRQFLTKHPYVSLSDWLS 120 Query: 92 EIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 IDA S V+++R ++ + P +K+ L+ ++ + NA+LK LEEP Sbjct: 121 FIDAESKQANISVDESRHIIQQLSLKPFESEYKILLLWLPEFMNISAANAILKILEEPSP 180 Query: 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 FLL + +P +L TI+SR + E++ + L H P Q +A Sbjct: 181 KTLFLLVSQNPNQLLATIISRVQAVQTAPITDEEVANYLVA-----HQQLPPEKAQQVAY 235 Query: 209 AAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALI 268 A+GS+ A+ L D + + + + + E +++L Sbjct: 236 MADGSINAAIHLLDN-----------------THHTQHELFVEWMRTCFKKDMEALVSLT 278 Query: 269 NEAAARGIEWE-ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + A + + L L + + + L ++ +R + + L Sbjct: 279 DTFAKLSKDQQKNLFQYGLHICREALVWKQGDEQLVRLAGKEYQFVQNFSRVLQIHNSSL 338 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 Y+ L ++ T L + Sbjct: 339 LYEQFNDAIFHLERNASPKIVFMDTSLHIIQIINP 373 >UniRef50_C8NGL8 DNA polymerase III, delta prime subunit n=2 Tax=Granulicatella RepID=C8NGL8_9LACT Length = 319 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 114/332 (34%), Gaps = 23/332 (6%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNCREIEQ 84 A + + HAYLF G +G+GK +A+ +AK LNC C VC++C IE Sbjct: 6 EAFIRTIDNLQFSHAYLFEGAKGIGKAEMAKEIAKILNCTNRSVGEGACQVCEHCLRIEH 65 Query: 85 GRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 G F D I ++ KV R L + + +I V L+ + N+LLK L Sbjct: 66 GNFPDYIVVEPEGTTIKVNQIRALKSQLTKTAMESSAIICVIHAVDTLTPGAANSLLKFL 125 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEP ++ F+L T K+ +TI SRC ++ + + L+ Sbjct: 126 EEPTGNIHFILLTEQLSKVLITIQSRCQIIRFQSNQEDTVNGLLKEKGAS-------NVT 178 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 L S AL L + Q S + Sbjct: 179 AQLVSQLTNSADQALLLLESESFGQIRQESWNWFVRIFTNRAMAFI-------------T 225 Query: 264 VMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 323 + + + +E E L + + + + ++ +A + Sbjct: 226 IQSQVLPLLVSKVESEQFLTLLQLYIRDALL-CAQGLEGQLIQSDKIATVKTIAGKLSVK 284 Query: 324 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 ++ + ++ + +E +L+ Sbjct: 285 QWIQEHEKMTKALSKIQSNVGVQAVLEQWVLQ 316 >UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-like ATPase n=4 Tax=Leptospira RepID=Q04QW6_LEPBJ Length = 423 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 47/298 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 LA K RP F +V+GQ L N R + + G G GK+++A +L + N Sbjct: 12 PLAHKIRPSGFEEVIGQTRATKQLVNY----RSPVSIILYGPPGTGKSTLAGILCRKWNL 67 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 A T V + + LL+ + + Sbjct: 68 PFVEYN-------------------------AVSTGVSEIKKLLERAEREGTI----LLF 98 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 +DE+H S ++LLK +E + ++ +LSRC ++ L E+ Sbjct: 99 LDEIHRFSASQQDSLLKGVETGHLVLIGATTENPAFRITRPLLSRCQILKIEPLSWEEQS 158 Query: 185 HQLEHILN--EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSAM 240 LE + E I P A + L R + G R LS + S +S V Sbjct: 159 LLLERGIQNLEYSIHLNPGAKETLIRFSGGDGRKLLSNLEGLSFSFPENHTISKSDVEEY 218 Query: 241 L----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 L G D + ++++ ++ + + + G + ++ ++ L Sbjct: 219 LESRVIEYDKSGESHYDVISAFIKSVRGSDPDAALYYLAVLLEGGEDPLFIMRRLIIL 276 >UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonproteobacteria RepID=A7ZAZ1_CAMC1 Length = 394 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 112/298 (37%), Gaps = 42/298 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L +RP+ ++ GQ+ V TA ++ +I H+ +F G G GKTS AR +A Sbjct: 1 MSSLALM--FRPKNLDEICGQKAVKTAFLKFIATSKIPHS-IFYGPAGCGKTSFARAVA- 56 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 G D E D K++D R +L N + A Sbjct: 57 -----------------------SGANYDFYEFDG-GNLKIDDFRKILKNYENA---LNK 89 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ IDE+H LS+ ALL +E V L I SR + F + L Sbjct: 90 PLFFIDEIHRLSKTQQEALLIPMENYKALVIGASTENPFFTLSSGIRSRSMLFEFRPLSS 149 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 L I + + + A + L +++ G R L+L + A+ D VS + + + Sbjct: 150 SDFEELLAKIKEQISFSIDEDAKEYLFKSSGGDARAMLNLLEFAVTL-DENVSIENLKTL 208 Query: 241 ----------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + A + ++++ ++ V+ + G + + M Sbjct: 209 RQNALKEGAKEDDTHYELASAFIKSLRGSDENAVIYYLARLIDSGESADFIARRMAIF 266 >UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepID=A3DD23_CLOTH Length = 432 Score = 159 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 115/310 (37%), Gaps = 53/310 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T + GQE ++ L + RI + + G G GKTS+AR++A Sbjct: 6 EPLAYRMRPRTLEEFYGQEEIVGEGKLLNRMIKADRIS-SIILYGPPGTGKTSLARIIA- 63 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR-GR 119 E A V D + ++ + Q Sbjct: 64 ------------------------NSTKANFEKLNAVTAGVADIKRIVSDTQNPILNPKG 99 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 V IDE+H ++ +ALL +E+ + ++ ++SR F LK L Sbjct: 100 RTVLFIDEIHRFNKSQQDALLPYVEDGTIILVGATTENPFFEVNKALISRSSVFMLKPLG 159 Query: 180 VEQIRHQLEHIL-NEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----- 227 + I+ + + L ++E I E AL LA +G R AL+ + A+ + Sbjct: 160 SDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICDGDARIALNALELAVLTSPVGS 219 Query: 228 -GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 G + Q + + G D + +++M ++ + + + A G Sbjct: 220 DGKFHIDIQLIEECIQKKAARYDKSGEEHYDNISAFIKSMRGSDPDAAVFYLARALYAGE 279 Query: 277 EWEALLVEML 286 + L ++ Sbjct: 280 DPMFLARRIM 289 >UniRef50_B0Y2N9 Replication factor C subunit n=2 Tax=Aspergillus fumigatus RepID=B0Y2N9_ASPFC Length = 389 Score = 159 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 123/370 (33%), Gaps = 67/370 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP T VVGQ+ L+ L + + + H LF G G GKTS LA+ L Sbjct: 19 LPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPH-LLFHGPPGTGKTSTILALARQLY 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPAR----- 117 + ++E++A+ V D + + P Sbjct: 78 G------------------DADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLR 119 Query: 118 ----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FK+ ++DE + + AL + +E+ +F + T + KL ++SRC + Sbjct: 120 ESPYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARL 179 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG----- 228 L IR L + E+I P AL+ L+ + G +R AL++ + + Sbjct: 180 RFPPLRPSAIRTLLLQVATTENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWSD 239 Query: 229 ------------------------------DGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 G ++ + + T ++E Sbjct: 240 DEPTTTISRIKFLMMASETSQQASTSNLPAQGVITVETIQEYTHTPLSSDISVIIEGAKG 299 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 N R + IN+ E +L ++L + PA + + Sbjct: 300 DNYNRCIISINQI---KSETGLILADLLTAISARLQHAQVPAPVKITWLDALSEIEANLA 356 Query: 319 TIPPTDIQLY 328 +IQ Sbjct: 357 CGGSEEIQSA 366 >UniRef50_C7D0N7 DNA polymerase III delta prime subunit n=38 Tax=Enterococcus RepID=C7D0N7_ENTFA Length = 324 Score = 159 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 115/340 (33%), Gaps = 43/340 (12%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L GR+ HAYLF G G GK +AK + C + PC C NC I + Sbjct: 24 KQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQQPCNECHNCVRINEN 83 Query: 86 RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D++ I + KV R+L + KV+LI E +S + N+LLK LE Sbjct: 84 EHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEADKMSTGAANSLLKFLE 143 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 EP + +L TT ++ TI SRC H + L + + +L E Sbjct: 144 EPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIKQGIGEK------TAI 197 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 LLA S A+ ++ + ++ L + + + Sbjct: 198 LLAELTN-SFEKAVEISQDEWFNEAREI----------------ILQWFNYLKSNDLQAF 240 Query: 265 MALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + + + ++ ++ E + A+ + Sbjct: 241 IYVQKKMVKVFKEKEQQALSFDLLMVYYRQLL---------------EESVATQQAKKVT 285 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + +L R++ + E +++ + Sbjct: 286 EEQAER-LALILKARQKWTANVSWQNVCEQLVIQMIHPKS 324 >UniRef50_Q1N4U3 DNA polymerase III subunit delta n=1 Tax=Bermanella marisrubri RepID=Q1N4U3_9GAMM Length = 328 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 34/338 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 L+ LS R+ HA L +G +GVGK + A+ + C G TPCG C +CR Sbjct: 14 WQTLSQQLSSQRLGHAVLLTGQQGVGKRVFLKEFAQLVLCHQGEQQTPCGECASCRLFTA 73 Query: 85 GRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 G D I ++ K++ R + D V ++G+ KV L+ +++ ++ NALLK Sbjct: 74 GNHPDFITVEPEETGKAIKIDQIRRVTDFVNTTASQGQRKVVLLGPAEVMNINASNALLK 133 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 +LEEP V LL + P +L TI SRC Q+ + L+ E Sbjct: 134 SLEEPSSQVTMLLYSHQPSRLLATIKSRCQQYSAPTPKFQDGLMWLQQNSQESG------ 187 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L L R A+G+ + + +Q + V M D + + + Sbjct: 188 -LDSLLRLAQGAPLKVIEMIEQDV----------HVQYMQFCQDMQDLAN-HSVVWQGVV 235 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + E LL GLL + + ++ + ++ + Sbjct: 236 SKWKNW---------SVEYLLDWFYGLLLDVQRCKSGVQDRLIPELNMQTELV--SKRMS 284 Query: 322 PTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLLRAL 357 + + +K + P+ + +E L+ L Sbjct: 285 VAEADGILSAIYESKKAVVSGSNPNPTLLIERLLVDWL 322 >UniRef50_A7NRV6 DNA polymerase III, delta prime subunit n=5 Tax=Chloroflexi (class) RepID=A7NRV6_ROSCS Length = 354 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 127/352 (36%), Gaps = 44/352 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++G E + L ++ R+ HAYL G GVGK +A LA+ LNCE PC C Sbjct: 10 MIGHEWAVEFLRRSIAGKRLAHAYLIGGPEGVGKALLALRLAQALNCE-RSALDPCLRCR 68 Query: 78 NCREIEQGRFVDLIEIDAA--------------SRTKVEDTRDLLDNVQYAPARGRFKVY 123 C+ IE+G D+ A K++ R+ ++ P GR +V+ Sbjct: 69 ACQRIERGNHPDVRIAGMATQAAGAKSDDAARQKELKIDTVREWQRDMMLKPYEGRRRVF 128 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++ + L+ + NA+LKTLEEPP + +L L TI+SRC L+ L Q+ Sbjct: 129 ILHDAEKLNESASNAMLKTLEEPPPYATIVLVAHTVGSLLPTIVSRCQLLRLRPLPRAQV 188 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 L E +LLA + G + AL + D + ++ +L Sbjct: 189 AAALR-----EKRNLAAGDAELLAAWSGGRIGWALRMVDTPDELAARR---DQLAELLAL 240 Query: 244 LDDDQALSL------VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 D A L +A + V L + + Sbjct: 241 ADQPLATRLRWAEEQAKAYRAGDQTAVFET--------------LDLWQSWWRDVLL-TA 285 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 + + A D+ + + + + L + ++ + Sbjct: 286 AGCPQAVVHIDRRDELVAAAAQHTVPDLHAFVSGIALAAQRLRDNVNPQLAL 337 >UniRef50_Q6MCA3 Putative DNA polymerase III, delta' subunit, holB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCA3_PARUW Length = 369 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 132/372 (35%), Gaps = 43/372 (11%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P +F+ +VG + + L L I ++ LF+G GVGK A LA L CE Sbjct: 5 PSSFSFLVGNDPIKIYLQRMLIKKAIGNSLLFAGPNGVGKGLFAYALASQLICEQEEKNK 64 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEV 128 +IE G D+ + ++ R+L + V P +K+++I + Sbjct: 65 --------YKIENGLHPDIHIYRPEGKLGLHGIQSLRELSEEVHLPPYEASWKIFIIHDA 116 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 + S N LLKT EEPP +L + L TI+SRC H + + +I L Sbjct: 117 ERMLSVSANTLLKTFEEPPPKTVIILLSQSQAALLPTIVSRCRTLHFQPIHASEIEKVLV 176 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDA---------------LSLTDQAIASGDGQVS 233 E + E Q +A ++GSL A L+ Q + + + Sbjct: 177 -----ERMYLETEFAQNIASLSQGSLGRAVQLIQKKGDESRIFLLNTLSQLPLTSYKEFT 231 Query: 234 ------TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG------IEWEAL 281 + ++ ++ E + + + E+L Sbjct: 232 QIVGELVAQIELSKKLFEEKAKEEFLKLFSEQLSTAHQQHLEKEIEGRCTQIFLQDVESL 291 Query: 282 LVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 ++ + ++QL+ + + ++ + +++ +++ R L Sbjct: 292 FDQLFAWYRDLHLLQLTQNKSLLIHSDYAESIEQILQRGNLLPLEIVQKSIEEARLSLQR 351 Query: 342 APDRRMGVEMTL 353 + + +E Sbjct: 352 STSLNICLENLF 363 >UniRef50_A9BKX0 Rfc2 n=1 Tax=Cryptophyta RepID=A9BKX0_9CRYP Length = 319 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 51/359 (14%), Positives = 108/359 (30%), Gaps = 50/359 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + K+RP ++ + + + + + SG G GKTS LA+ Sbjct: 5 NDEPWTFKYRPYLLKELSIHKSLKKKFILMTKKVILPN-IILSGPPGSGKTSGIFCLARK 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + + C ++ + VE R+ + + Sbjct: 64 IFGKDFQKHVLC-------------------LNTSDNRGVEIIREKIKTFCQKKLKNENL 104 Query: 122 V---YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++DE ++ + AL + +E + V+F L P K+ + SRC K + Sbjct: 105 KKKLVILDEADFMTITAQEALRRIMEIFSDKVRFALICNFPSKIIGPLQSRCAILRFKKI 164 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + ++L ILN E + + L+ G +R L++ Q I G ++ +A+ Sbjct: 165 KETFLLNRLIFILNNEGVFFDIAGLEATIFLTNGDIRQILNM-SQIIVKTFGNLTQKAIK 223 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 + L A N L+ + G + + +I + + Sbjct: 224 KFCSLSNSTVFLEFFSAFSNKNVYFSQELLLDCINNGSNIIETIQRIFLFCKKIHINEKG 283 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L R + + + + Sbjct: 284 K--------------------------IKIFDILCHFRLICSQNVNPSVFLMFLNQKLC 316 >UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/replication n=9 Tax=Fusobacterium RepID=Q8RGJ6_FUSNN Length = 407 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 122/324 (37%), Gaps = 41/324 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA K RP++ D VGQE +L + + + ++ +F G G GK+S+ +++ Sbjct: 12 EPLAYKLRPKSLDDFVGQEKLLGKDGVITRLILNSTLSNS-IFYGPPGCGKSSLGEIISN 70 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGR 119 L+C A+ V D R++++ + + Sbjct: 71 TLDCNFEKLN-------------------------ATTASVSDIRNVVETARRNIELYNK 105 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DE+H +++ +ALL E+ + + +LSR + F KAL Sbjct: 106 RTILFLDEIHRFNKNQQDALLSYTEDGTLTLIGATTENPYYNINNALLSRVMVFEFKALT 165 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 E I ++ LN +I + +++ ++G R AL+ + + Q+S + + Sbjct: 166 NEDILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIALNYVE-MYNNIHSQMSEDEIFS 224 Query: 240 MLGTL---------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM-LGLL 289 + D + ++++ ++ + + + G + + + + + Sbjct: 225 IFKERQVSFDKKQDKYDMISAFIKSIRGSDPDAAVYWLARLLDGGEDPKYMARRLFIEAS 284 Query: 290 HRIAMVQLSPAALGNDMAAIELRM 313 I M + N ++ Sbjct: 285 EDIGMANPEALLVANAAMNACEKI 308 >UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5_PELCD Length = 726 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 147/478 (30%), Gaps = 66/478 (13%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP+T + VGQ+H+L L + ++ + +F G G GKT++A+++ Sbjct: 11 SSEPLASRMRPRTLEEYVGQDHILGEGRLLRRAIRADQLS-SLIFYGPPGTGKTTLAQVI 69 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-AR 117 A A + V+D R+ +++ + + Sbjct: 70 A-------------------------NSTASRFVSMNAVLSGVKDLREAIEDARQSQEYY 104 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + + +DEVH ++ +ALL +E+ + ++ ++SR F L Sbjct: 105 DKRTILFVDEVHRWNKSQQDALLPWVEKGTIILIGATTENPYFEVNKALVSRSRVFQLLG 164 Query: 178 LDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAI----- 225 L E +R + L + + EP AL L R A G R L+ A+ Sbjct: 165 LTEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVASGDARSLLNALQLAVETTPE 224 Query: 226 -----ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINE 270 A+ ++ A + G D + ++++ ++ + + + Sbjct: 225 SFPPPANSRIHITLSAAEESIQQKAVLYDKEGDYHFDTISAFIKSLRGSDPDAALYWMAR 284 Query: 271 AAARGIEWEALL-VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 G + + ++ + M + A+ R+ T LY Sbjct: 285 MVRAGEDPRYIFRRMLISASEDVGMADPYALGVVEAAASAFDRVGLPEGQFHLTQATLYL 344 Query: 330 QTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQV 389 T + + L +P + R + P Sbjct: 345 ATCPK--------SNSSLAFFDALEAVAKEEAEVPNHLRDSSRDEHSFGHGKGYKYPHAF 396 Query: 390 PPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAAL 447 + T+ + + Q ++ + + Sbjct: 397 RDHWVAQQYLPGTLKGRIFYQPTGQGYEGSIQTQVIRHREEQLDRMLEETPETLSFSP 454 >UniRef50_P0C7N7 Replication factor C subunit 2 n=2 Tax=Pleosporineae RepID=RFC2_PHANO Length = 411 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 119/350 (34%), Gaps = 82/350 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q K+RP+T ++V Q++ + L+ L + H LF G G GKTS LAK L Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPH-MLFYGPPGTGKTSTILALAKQLY 91 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 + + ++E++A+ + R + + Sbjct: 92 GPELMKSR------------------VLELNASDERGISIVRQKVKDFARQQLSVAPTYN 133 Query: 119 -----------------------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 FK+ ++DE +++ + +AL +T+E +F L Sbjct: 134 VMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLV 193 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 ++ + SRC +F K+LD +++ I E + + + L R A+G LR Sbjct: 194 CNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLR 253 Query: 216 DALSLTDQAI-----------------------------ASGDGQVSTQAVSAMLGTLDD 246 A++ A A +S + ++ + G + Sbjct: 254 KAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPA 313 Query: 247 DQALSLVEAMVEANGERVMAL------INEAAARGIEWEALLVEMLGLLH 290 S +A+ + + + + A G + ++ + Sbjct: 314 PTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVM 363 >UniRef50_C8W7S8 DNA-directed DNA polymerase n=2 Tax=Atopobium RepID=C8W7S8_ATOPD Length = 389 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 142/389 (36%), Gaps = 48/389 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 PQ + Q V LA L ++ HAYLF G G GK A+ LA+ + C G A Sbjct: 16 PQALTRLQDQPQVQNLLARALHEHKLGHAYLFVGAPGSGKGLAAKALAQCVLCAQGGDAA 75 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CD+C I +G D+ + AS +E R L +V AP R K+Y+ID Sbjct: 76 ----CDDCIRISRGTHPDVHVLTPASANGYLIEQIRQLTADVSLAPMRSTHKIYVIDRAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +L +S NALLKT+EEPP F+L+ + TI+SRC + L + + Sbjct: 132 LLRENSANALLKTIEEPPADTIFILSARSSSAVLPTIVSRCQVVAFRTLTDAVAKAAIMR 191 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ- 248 ++ +A AA G+ A+ +S + Q + + G L + Sbjct: 192 EISA------TEQEARIALAATGTPSRAVEFLQ---SSTRKNIRRQLI-DVFGNLLRNDS 241 Query: 249 ------ALSLVEA--MVEANGERV-------------------MALINEAAARGIEWEAL 281 A L+EA + + +R + N+ E + Sbjct: 242 WDVLISAKELIEAAKIPLGDVKRAQEEALAQSEDFLTSAALKQVEAANKRELTARERSGI 301 Query: 282 LVEML---GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 + + LL + + + + +A + + + Sbjct: 302 IEMLAILESLLRDVLLCCEAIDE-EIVNTDAAGIIDRVASQTHTQGVLGALAAVQEAQNN 360 Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 L + ++ +E+ LL PL Sbjct: 361 LDRSVSPQLTLEVMLLHIKEALTCPPLSR 389 >UniRef50_B6YQP6 DNA polymerase III delta' subunit n=8 Tax=Bacteroidales RepID=B6YQP6_AZOPC Length = 378 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 127/397 (31%), Gaps = 65/397 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F ++VGQ + L + G I HA L +G +G G +A + L C Sbjct: 1 MFFRNIVGQTIIKQRLIQSVKDGFIPHAQLITGNQGTGTLILALAYIRYLYCTNRQEKDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEI--------------------------------------- 93 CG C +C++ ++ DL I Sbjct: 61 CGTCPSCQKFDKLVHPDLHFIFPIINKKRREDKKEALCHDFLPEWRNFVLTTPYADFTSW 120 Query: 94 -------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 +A ++ D++ +++ +K +I + + + LLK LEEP Sbjct: 121 LINIGEENAQGLIYARESDDIMRKLRFKAYEADYKSVIIWLPEKMHETAASRLLKLLEEP 180 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 PE FLL + +P K+ TI SR + + + + L +E + + Sbjct: 181 PEKTVFLLVSEEPDKIIATICSRMQVMAVPPIADQDLFQTL-----QEKYDIPDQDIWHA 235 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 R AEGS A + S + + L S + ++ E Sbjct: 236 IRLAEGSYEKATKILS----------SVEDNESYLNLFTTIMRNSWQKNILSIKVETDKF 285 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 A + L+ ++ + +L+ + + + T++ Sbjct: 286 TSMSRAQQKK----FLMYAQQMIRENFLYRLNELKINFMNHKENEFAIKFHPYVNETNVI 341 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + + + + + RM ++ +A Sbjct: 342 KFMEEFSLAEQHIESNINPRMVFFDLSMKIIALLNNN 378 >UniRef50_P52024 DNA polymerase III subunit delta' n=22 Tax=Pseudomonadaceae RepID=HOLB_PSEAE Length = 328 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 126/346 (36%), Gaps = 32/346 (9%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 Q+ + + L HAYL G G+GK ++A A L C+ A CG C C Sbjct: 7 WQQALWSQLGGRAQH---AHAYLLYGPAGIGKRALAEHWAAQLLCQRPAAAGACGECKAC 63 Query: 80 REIEQGRFVDLIEID---AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + + G D ++ A +V+ RDL+ V G KV L++ ++ ++ Sbjct: 64 QLLAAGTHPDYFVLEPEEAEKPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAA 123 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK+LEEP LL + P +L TI SRC+Q L L +E Sbjct: 124 NALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCVQQACPLPGAAASLEWLARALPDE-- 181 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 AL+ L + GS A L Q + QV + V +L + Sbjct: 182 --PAEALEELLALSGGSPLTAQRLHGQGVREQRAQV-VEGVKKLLKQQ-----------I 227 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + + L I QL+ G +A + ++ L Sbjct: 228 AASPLAESWNSV--------PLPLLFDWFCDWTLGILRYQLTHDEEGLGLADMRKVIQYL 279 Query: 317 ARTIPPTDIQLYYQTLLIGRKEL--PYAPDRRMGVEMTLLRALAFH 360 + LL R+++ +R + +E L++ + Sbjct: 280 GDKSGQAKVLAMQDWLLQQRQKVLNKANLNRVLLLEALLVQWASLP 325 >UniRef50_Q12UK9 Replication factor C small subunit n=4 Tax=Methanosarcinaceae RepID=Q12UK9_METBU Length = 341 Score = 157 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 135/368 (36%), Gaps = 42/368 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ K+RPQ D+VG + +L + + G + H +F G GK+S A LA Sbjct: 1 MNDL-WTVKYRPQKLEDIVGNGESVNSLVHLVGSGNLPH-LVFHGPVNSGKSSTAFALAY 58 Query: 61 GLNCETGITA----TPCGVCDNCRE--IEQGRFVDLIEIDAASRTKVEDT---RDLL-DN 110 L E D + + RFV +I D + ++++ + Sbjct: 59 ELYGEYYENNFTYFNASDFFDQGKRYLVRDKRFVHIIGTDDPKKIYSSVISIFKEVINEF 118 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 +K+ ID V L + +AL + +E+ +F+L+TT P KL + SR Sbjct: 119 AGMGSLDADYKIIFIDNVESLETGAQHALRRIMEKYTRTCRFILSTTQPSKLIAPLRSRG 178 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+ + + +R + + +E I+ L A G++ AL A+ + G Sbjct: 179 LELFFTYVPDDALRSFVISVAEKEAISISDDGYDALLYYAGGNVSKALLTLQFAVMNHPG 238 Query: 231 Q-VSTQAV-SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLG 287 + ++ + + LG + + L A +E + + LI+ G + +L ++ Sbjct: 239 KTITGEILYEEALGDVSKN-VTELHNAAIEHDVLKARKLIDTLLIEEGFTGDEVLQQLHS 297 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRM 347 ++ V ++ + + + + R+ Sbjct: 298 VVVESGRV--------------------------EGEVAKAICRIADTDAMVIDSANPRI 331 Query: 348 GVEMTLLR 355 +E + Sbjct: 332 HLEKLVTE 339 >UniRef50_A6NQC8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQC8_9BACE Length = 331 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 117/333 (35%), Gaps = 22/333 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + + G + L + + HAY+ SG G GK +++R+LA C G P Sbjct: 1 MNLSLLAGNAALKGQLEAQTARRGLSHAYILSGPAGAGKRTLSRVLAAAFVCR-GQGDKP 59 Query: 73 CGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C +CR+ G D+ I D V R L + P KVY+++ + Sbjct: 60 CLSCPDCRKAMGGIHPDISVIGDDGKDINVAQVRALRSDAYVRPNEAGRKVYILENAQTM 119 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NA+LK LEE P + FLL T + L T+ SRC L + + L Sbjct: 120 NASAQNAMLKLLEEGPPYAAFLLLTDNAAALLQTVRSRCEVVTLSPVTQAEAEAWLSRRY 179 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 ++ A+ A+ EG L A++ + + A Sbjct: 180 PDK----SREAIVGAAQRCEGLLGRAVAELEGSSGGESQA--------------RAAAPE 221 Query: 252 LVEAMVEANGERVMALINEAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L+ + + +M + L E + LL +++ D Sbjct: 222 LIARLSAGDELALMEFCISLEKWDRDSLSDLFSEGVLLLRHALVLRTGGDCGEADPDRRA 281 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + A+ + P + + L R + Sbjct: 282 AA-AKAAQALSPKALLVAVDVLEQLRASCAFNV 313 >UniRef50_B1YGD5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YGD5_EXIS2 Length = 330 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 75/345 (21%), Positives = 124/345 (35%), Gaps = 22/345 (6%) Query: 13 QTFADV-VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 QTF ++ Q + T L N L RI+HAY+F+G A+L AK L CE Sbjct: 2 QTFHELEQTQSVIATILRNSLQTNRINHAYIFTGDYEPLLLEAAQLFAKSLFCERRDQIE 61 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 PC C +CR ++ G VD +I+ K E ++L+ ++ G ++Y++ + H Sbjct: 62 PCQTCRSCRRMDSGNLVDYYQIEPDGATIKKEQIQELMHDLSLRGLEGDRQIYVVTQSHK 121 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLK EEP +L T PQ L TI SR + D I L Sbjct: 122 MTPQAANSLLKFFEEPGAGKVAILITNQPQLLLPTIRSRGQLLSFRPADRLLIGQVLSEK 181 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 L LA + DA + Q + + D Sbjct: 182 TGR------DNELTQLAARVYPKIEDAEQALVEDWFVNARVSVLQLMEELANRPADLPLF 235 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 V + L + + ++L+P+ A Sbjct: 236 -------------VQEKWMSQFKNRQDARIGLELVTCFFEDVLHLKLNPSWETITYANSR 282 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + ++ T I + Q +L K + + ++ VE + Sbjct: 283 PLLEQMGGK-SQTTITRWLQAVLAAVKRIEANVNPQLTVERLMFD 326 >UniRef50_C6X5R9 DNA polymerase III subunits gamma and tau n=2 Tax=Flavobacteriaceae RepID=C6X5R9_FLAB3 Length = 372 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 108/383 (28%), Gaps = 66/383 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ + L +S R+ HA LF G G G ++A AK + + Sbjct: 1 MNWDQIVGQKKIKHLLTESISDNRVGHAQLFLGADGYGTLALAMAFAKEILKKENEH--- 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDA--------------------------ASR-------- 98 +C ++ +DL + Sbjct: 58 -----SCSKVAHLNHLDLHFSFPVFKEKSSGLSSNFAEEFREMVLNNPYSDNEDWSRILE 112 Query: 99 -------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 ++ + G K+ ++ + ++ + N LK LEEPP+ Sbjct: 113 SENKQLTIYADEIDQVNQKFALKSFEGGSKILIVWQADKMNISAANKFLKFLEEPPKDTF 172 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 +L + + TILSR + +D + I L+ + + + A+ Sbjct: 173 IILTAENGDSILPTILSRTQLVEIPRIDDKDIEEFLKKTYD-----ISEEKISEIVFQAQ 227 Query: 212 GSLRDALSL-TDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 G+ A L ++ V ++ + V+ N Sbjct: 228 GNWNTAQKLMLSDDSDDEFEKLFVLWVREAFQVKKK---PQFLKNI-------VLWGRNI 277 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI-ELRMRELARTIPPTDIQLYY 329 A + + L + + L R ++ I +I+ Sbjct: 278 AVWNREKQKNFLHYCAEMFRLALLQNYGNENLVYKKIDSGGFRWDSFSKYIHGANIEAIL 337 Query: 330 QTLLIGRKELPYAPDRRMGVEMT 352 + L + ++ Sbjct: 338 NEISEADYHLERNANPKIVWTDL 360 >UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696_ARATH Length = 525 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 112/312 (35%), Gaps = 48/312 (15%) Query: 3 YQVLARKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q L+ + RP+T DVVGQ+H + L + + R+ + +F G G GKTSIA+ L Sbjct: 100 HQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLP-SIVFWGPPGTGKTSIAKSLI 158 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + +A + V+D RD +++ + GR Sbjct: 159 NS---------------------SKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + V +DEVH ++ + L +E+ L +LSRC L L Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPL 257 Query: 179 DVEQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI------A 226 + L +++ + + ++ LA +G R AL+ + + A Sbjct: 258 KPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRA 317 Query: 227 SGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 D VS L G + +L ++M + + + G Sbjct: 318 GTDAVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEGGE 377 Query: 277 EWEALLVEMLGL 288 E + ++ Sbjct: 378 EPLYIARRLIRF 389 >UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria RepID=Q3B4X4_PELLD Length = 457 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 120/309 (38%), Gaps = 48/309 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RPQ+ ++ GQEH++ L L G++ + +F G G GKT++A + Sbjct: 23 AFQPLAERVRPQSIDEMAGQEHLVGPMGPLRRFLGGGQLP-SMIFWGPPGSGKTTLAEIC 81 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A L+ + A + V+D R +L+N + ARG Sbjct: 82 ASALDFRFEQLS-------------------------AIESGVKDVRRVLENAASSRARG 116 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + IDE+H ++ + LL +E+ + ++ +LSR + LK+L Sbjct: 117 IRTLLFIDEIHRFNKSQQDTLLHAIEQGVVVLIGATTENPSFEINAALLSRMQVYTLKSL 176 Query: 179 DVEQIRHQLEHILNEEHIAHEP----RALQLLARAAEGSLRDALSLTDQAIASGDGQ--- 231 E IR + L+ + + + ++ L R + G R AL+ + A Sbjct: 177 GPEDIRLVVTRALSVDPLFRDRHVQVEDMEFLLRFSGGDARKALNALEAAFLLIAEDEDP 236 Query: 232 --VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 + + L G + + +++M ++ + + + G + Sbjct: 237 ALIGRDLLERALQHRAPIYDHGGEAHYNTVSAFIKSMRGSDPDAALFWLARMIEGGEDPR 296 Query: 280 ALLVEMLGL 288 + ++ Sbjct: 297 FIARRLVIF 305 >UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F86 Length = 422 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 63/381 (16%), Positives = 126/381 (33%), Gaps = 68/381 (17%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 M + LA + RP+ D++GQ H++ L + +G++ + + G GVGKTSIA Sbjct: 1 MKKEPLAYRMRPKKIEDIIGQSHLVGDGKLLRRMVDVGQLS-SMILYGPPGVGKTSIATA 59 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +A ++A K + ++ Sbjct: 60 IA------------------------GSTDTPFKLLNAVVHNKKD-----MEIAVAEAKM 90 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + ++DEVH L + + LL LE+ + + I SRC F L++ Sbjct: 91 HGQLIVILDEVHRLDKAKQDFLLPHLEKGLIILIGATTANPYHSINPAIRSRCQIFELES 150 Query: 178 LDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD- 229 L + I+ L + +E I E A+ LA G +R AL+ + A+ S Sbjct: 151 LTPDDIKTALIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALELAVKSTFA 210 Query: 230 -----GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 +S + + + G D + +++ ++ + + Sbjct: 211 TEDGIKHISLETAESCIQKKSFHHDKDGDAHYDVLSAFQKSIRGSDVNAGLHYLARLLEA 270 Query: 275 GIEWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ------- 326 G + ++ +L + I + R+ IP ++ Sbjct: 271 G-DLTSIARRLLVISYEDIGLANPQAGVRTLAAIESAERLGMPEARIPLSNAVVELCLSP 329 Query: 327 ---LYYQTLLIGRKELPYAPD 344 Y+ + ++ Sbjct: 330 KSNSAYKAIDAAIADIRGGAS 350 >UniRef50_C7X8N1 DNA polymerase III, delta' subunit n=20 Tax=Bacteroidales RepID=C7X8N1_9PORP Length = 374 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 65/389 (16%), Positives = 128/389 (32%), Gaps = 64/389 (16%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++GQE V L G + HA LF+ G G +A A+ LNC Sbjct: 1 MYFKDIIGQEEVKERLRQSARTGIVPHAQLFTEQGGAGAFPLALAYARYLNCTNRTDTDA 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDA------------------------------------- 95 CG C +C + ++ DL + Sbjct: 61 CGRCPSCLKYDELAHPDLHFVFPIVAKKEKKKEVCDDYLSEWRGFLKEHPYFNMDEWLDY 120 Query: 96 --ASR----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 A +++ +++ + +++ ++ L N LLK +EEPP Sbjct: 121 IEAGNSQAIIYSKESDEIIHKLSLKIYEAEYRILMVWLPEKLHPTCANKLLKIIEEPPMR 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 L+ + P + TI SR + H++ ++ + I + + P + +A Sbjct: 181 TVILMVSETPDLILGTIQSRAQRIHIRPIETDAIMNAMVSR-----FGLSPDDAKHVAHL 235 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 + GS A+ +AI+ G+ +Q +++ N + + A+ + Sbjct: 236 SSGSFIKAM----EAISLGEEN-----------KFFLEQFKAMMRNSWARNVKGMKAMAD 280 Query: 270 EAAARGIE-WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 A G E + L L+ M + L + + + ++ Sbjct: 281 VMAGIGRERQKNFLSYCQHLIRENFMYRFQSPELNYMNLDEASFSVKFSPFVNERNVIDL 340 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L + + + +M LR Sbjct: 341 MEELAKAERHITQNVNAKMVFFDLSLRIT 369 >UniRef50_C6APV7 DNA polymerase III subunit delta' n=1 Tax=Aggregatibacter aphrophilus NJ8700 RepID=C6APV7_AGGAN Length = 356 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 112/319 (35%), Gaps = 8/319 (2%) Query: 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA- 96 HHA L G+G + LA+ L C T CG C +C ++ D I Sbjct: 25 HHALLLRADVGLGVAQLCEALAQRLMCLTPNGDEACGQCHSCHLMQANSHPDFQHIAPIE 84 Query: 97 -SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 ++ R + + + KV I++ H L+ + NA+LKTLEEP + F+L Sbjct: 85 NKDIGIDQIRAMNEQATQHAQQNGNKVIYIEQAHRLTEAAANAILKTLEEPRPNTYFILH 144 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 L TI SRC ++L + E L+ ++ E + + +G++ Sbjct: 145 CDIQTALLPTIYSRCQVWNLLPPETEVALQWLQSQVSAETLEMLFASSPTRLLTPDGAIG 204 Query: 216 DA--LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV-MALINEAA 272 DA + D A AML +Q + R + L A Sbjct: 205 DANVQNPLDFVTALRVNYGRPLLALAMLQQNQLEQRREFLRQFWVFYRRRSPLELFPFFA 264 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 L +L L +L IE + + A+ + + + Sbjct: 265 KEKDMALQQLDWLLAFLSDALKAKLQVKNGW-ICQDIERGVIQFAQGLSAPALLQAGNIV 323 Query: 333 LIGRKELPY--APDRRMGV 349 R +L A ++ + + Sbjct: 324 QKVRSDLQTINAVNQELIL 342 >UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endopterygota RepID=Q17P00_AEDAE Length = 560 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 111/330 (33%), Gaps = 66/330 (20%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA K RP +D +GQE ++ T L I + + G G GKT++A ++ Sbjct: 134 SNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEKNTIP-SMILWGPPGCGKTTLAHII 192 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A +C++ +A+ + V D ++ + + A Sbjct: 193 AA-----------------HCKKHGS----MKFVKLSATMSGVNDVKEAVKLAKNDLAFK 231 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DE+H ++ + L +E + L +LSRC L+ L Sbjct: 232 RKTIMFMDEIHRFNKLQQDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVIVLEKL 291 Query: 179 DVEQIRHQLEHILNEEH---------------------IAHEPRALQLLARAAEGSLRDA 217 VE + L+ L + + ++ LA +G R A Sbjct: 292 GVEAVMKILKRALPQYKTVMFENNNRVPDIRGLPFVPRMMISAETIRWLAEICDGDARIA 351 Query: 218 LSLTDQAIA----------SGDGQVSTQAVSAML----------GTLDDDQALSLVEAMV 257 L+ A+ S ++S + + G + +L +++ Sbjct: 352 LNSLQLALNTVAARQDEEESALKRISLDEIKEGIKKSHLMYDRKGDQHYELISALHKSIR 411 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLG 287 ++ + + G + L+ M+ Sbjct: 412 ASDDNAALYWCSRMLVSGEDPRYLVRRMIR 441 >UniRef50_B0VH60 Putative DNA polymerase III, delta prime subunit (HolB-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH60_9BACT Length = 370 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 133/384 (34%), Gaps = 63/384 (16%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + GQE+ L L + RI AYLF G+ GVGK + A +NC PCG CD Sbjct: 5 IKGQENALELLDKAIENDRIAQAYLFYGSDGVGKFTTALYFGMAVNCLATSELKPCGECD 64 Query: 78 NCREIEQGRFVDLIEIDA----------------------------------------AS 97 C + Q D + + A+ Sbjct: 65 ACHKFLQLEHPDFVYLFPTPNLNLSVEGEIKNTDAQKSYEAYLQNKINTPWKDFFFKDAT 124 Query: 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 + E L ++ + ++++ +I++ M++ + NA LKTLEEPPE +L T Sbjct: 125 EIRKESITLLNKRLELSIHEAKYRIVIIEDADMMNNATANAFLKTLEEPPERTIIILITE 184 Query: 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 + TILSR + K L R +E IL E + +R G+L+ A Sbjct: 185 RLPLILPTILSRTQPVYFKPLT----RGVIEEILINE-FEINSALARSASRICAGNLKTA 239 Query: 218 LSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 + IAS +S+ + ++ L +E ++ + + + Sbjct: 240 IR-----IASESESLSSNWAFEIFSLAAEENDLGYLELAERYKKQQTIDQVIDLLKY--- 291 Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR-TIPP-TDIQLYYQTLLIG 335 + + + + +P + ++ +A + + + L Sbjct: 292 ----IRIIAS---DLGSLSTNPDS-EITNIDKLDFLKPIAEANLGIDDRLYDFLLFLEDL 343 Query: 336 RKELPYAPDRRMGVEMTLLRALAF 359 +++ + + + L Sbjct: 344 NRKVEGYANLNLVLTNLYLNCKHL 367 >UniRef50_A4BMM6 DNA polymerase III, delta prime subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMM6_9GAMM Length = 357 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 72/351 (20%), Positives = 125/351 (35%), Gaps = 36/351 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCG 74 + + V LA GR+ HA G+ G+GK+ +A A+ L C + CG Sbjct: 7 DHLPWHQPVWDRLAACHRRGRVPHAIAVVGSAGLGKSRLAIRFAQALLCASPRSDGDGCG 66 Query: 75 VCDNCREIEQGRFVDLIEIDAASR----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 C C G D + S K++ R L++ + + G ++V L+D Sbjct: 67 RCRCCHLQAAGSHPDHYAVHPESEPGGPIKIDQIRRLIEFLMRSSQYGGYRVTLVDPADR 126 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 ++ + N+LLKTLEEPP +L +LP T+ SRC L+ R L Sbjct: 127 MTLAAANSLLKTLEEPPAAAVLILVARQFSQLPATLRSRCRLVQLQPPPAVLAREWLAEH 186 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 P A+ LLA A G+ A++ + ++ + G A Sbjct: 187 C--------PEAIGLLA-LAGGAPLRAMAYAQAGTEGRYAALIADLLAIVEGHRSPVLAA 237 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 + + ++ L AR E L + G Sbjct: 238 QNWTGIGLRDWIELLQLALAELARAAFTECELDRIPG----------------------R 275 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 ++ L I + + Y + ++ R+ L + ++ +E +R Sbjct: 276 ADLQTLTERIDHSCLHDYMEEVVATRRILDQPLNEQLVIEDLFIRWRTATR 326 >UniRef50_P0AAZ6 Replication-associated recombination protein A n=338 Tax=cellular organisms RepID=RARA_ECO57 Length = 447 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 59/351 (16%), Positives = 121/351 (34%), Gaps = 61/351 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 ++Q LA + RP+ A +GQ+H+L L + G + H+ + G G GKT++A ++ Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVI 70 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A+ N + + A + V++ R+ ++ + G Sbjct: 71 ARYANADVERIS-------------------------AVTSGVKEIREAIERARQNRNAG 105 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DEVH ++ +A L +E+ +L +LSR + LK+L Sbjct: 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSL 165 Query: 179 DVEQIRHQLEHILNE-------EHIAHEPRALQLLARAAEGSLRDALSLTD------QAI 225 E I L + + + I + +A G R AL+ + + Sbjct: 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD 225 Query: 226 ASGDGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARG 275 SG + + ++ + G D +L +++ + + + G Sbjct: 226 DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAG 285 Query: 276 IEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELA 317 + + L + + + + A R A Sbjct: 286 GDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQA 336 >UniRef50_C0W271 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=C0W271_9ACTO Length = 390 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 139/393 (35%), Gaps = 55/393 (13%) Query: 15 FADVVGQEHVLTALANGLSLGR------------IHHAYLFSGTRGVGKTSIARLLAKGL 62 + +VVGQE + AL R + HA+L +G G G+++ AR L Sbjct: 4 WDEVVGQEKAVAALQEAAVHARATLNGVETASRAMTHAWLVTGPPGSGRSTAARAFVAAL 63 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFK 121 C CG CD CR + D+ + +E+ R + N Q AP++G+++ Sbjct: 64 QCTHPQVIG-CGECDGCRHVMAKTHPDVTDFATEKSIISIEEVRAFMHNAQSAPSQGKWR 122 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V L+++ + + N LLK +EEPP ++L P+ L TI SRC Q +L+ V+ Sbjct: 123 VILLEDADRMQERTSNLLLKAIEEPPARTVWVLCAPSPEDLITTIRSRCRQVNLRIPPVK 182 Query: 182 QIRHQLEH--------------------------ILNEEHIAHEPRALQLLARAAEGSLR 215 Q+ L I + E + ++ + ++ Sbjct: 183 QVAQLLMRRHGVSYEDAYQAAALAQSHIGIASKLITDPEKLHDRYTQIESILDID--NIG 240 Query: 216 DALSLTDQAIASGDGQVSTQAV----------SAMLGTLDDDQALSLVEAMVEANGERVM 265 DA+ ++ + V LG D ++ + + + E Sbjct: 241 DAVFYVEELLKENKENVEKDLATRNAREEAELKRTLGLNDTERIPPALRSQLTQLQEEQK 300 Query: 266 ALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + A ++ LLV +L + ++Q + +AR D Sbjct: 301 RRVTRATKDPLD--QLLVNLLSFFRDVMVIQTGMNHPP-INQGYVNLLENVARGSTLADT 357 Query: 326 QLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + RK L + E + + Sbjct: 358 YRKVTAIETARKRLQTNTSINLVFEALIADLIR 390 >UniRef50_Q46AT6 Replication factor C large subunit n=4 Tax=Methanosarcinaceae RepID=RFCL_METBF Length = 642 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 34/287 (11%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLG--RIH--HAYLFSGTRGVGKTSIARLLAKG 61 A K+RPQT ++VG + + L I A + G GVGKTS A LA+ Sbjct: 7 WAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARD 66 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGRF 120 L+ E +IE++A+ + + G Sbjct: 67 LDWE------------------------VIELNASDQRTAGVIERVAGSAASMNTFFGGK 102 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ ++DE + + ++ + ++ +L D L TI + CL+ ++ Sbjct: 103 RLIILDEADNIHGTADRGGMRAIAGIIKNTLQPIVLIANDIYGLTPTIRNLCLEIKFGSV 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + L+ + E I P A+Q +A A G LR A++ QA A+G + + +S Sbjct: 163 QSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAINDL-QAAATGRKTLEVEDLS 221 Query: 239 AMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVE 284 G + ++ + ++ + ++ + + + E Sbjct: 222 TS-GRDVKENIFKAMQRIFKSTDCKKALEAARGLDESPEDLVHWIDE 267 >UniRef50_B2UY72 DNA polymerase III subunits gamma and tau n=4 Tax=Clostridium RepID=B2UY72_CLOBA Length = 310 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 121/343 (35%), Gaps = 37/343 (10%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 +++G E ++ HA L G G+GK+ +A LA + G Sbjct: 3 EIIGHERIINGFDLRKRSNTFSHANLIIGDDGIGKSLVANYLANSILGLKGD-------- 54 Query: 77 DNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 FVD+I +S V+D R+++ V P KV ++ + ++ + Sbjct: 55 --------KEFVDIINYYPLSSSFGVDDIRNIIAEVSKKPFESDKKVLILHKCEKMTIQA 106 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 NALLKT+EEPP V +L + + + TI SRC + L L I +E + Sbjct: 107 QNALLKTIEEPPIGVHLILLSESLELILDTIKSRCQTYKLTPLSKGDITKYIESKYFDIS 166 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 I ++ AL ++G + + + L L+ Sbjct: 167 IENKKAALAY----SQGIPGKVEKFIEDGKLNDLRNI----------------LLDLLCD 206 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + N V+ + + +L ++ + I ++ + +R+ Sbjct: 207 LENNNDNFVLKYKEILPSYKDKQSEVLNILISYIRDIMFLKELDSNDLVVNFDKLKEIRD 266 Query: 316 LARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + + + + R L + M + + L+ Sbjct: 267 ISMRMSYKKLNSMLEYIKEARLSLNNNTNYSMTITVLLMGFAE 309 >UniRef50_A6FHN9 HolB n=1 Tax=Moritella sp. PE36 RepID=A6FHN9_9GAMM Length = 323 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 110/318 (34%), Gaps = 29/318 (9%) Query: 29 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 ++ GR+HHA + G+GK S A+ LA+ L C+ I PC C C+ E Sbjct: 14 QTQMTAGRLHHALFITSASGMGKLSYAQTLAQTLLCKEPIGWEPCHRCHPCQLFETSVHP 73 Query: 89 DLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 D + + V+ R + + G KV +I+ + S NALLKTLEEP Sbjct: 74 DYYLVSTEPGKVIGVDRIRHISQKLNEHSQLGGNKVVIIEHAESFNLASANALLKTLEEP 133 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 +L + ++ TI SRC + HL A ++ L+ E L + Sbjct: 134 SNGSYLILLAENKSQVLPTIYSRCQKLHLPAPAEQESMAWLQQ-----QFPIESPTLTAI 188 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 R G+ LS + ++ + L T L E + + E+ Sbjct: 189 -RINHGAPLHTLSYLNNGDDDLRKEIFSNI---TLLTTQPAAITRLCEIISDRTLEK--- 241 Query: 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 L + +L + V+ + + + + I Sbjct: 242 ---------------LSWLQFILLDLQKVKRGVSIDYIVNTDQLEWLTHFSTQLSQDKIT 286 Query: 327 LYYQTLLIGRKELPYAPD 344 L R+ L + Sbjct: 287 QLQSELTALRQLLMQNNN 304 >UniRef50_B3W9Y6 DNA-directed DNA polymerase III, delta prime subunit n=8 Tax=Lactobacillus RepID=B3W9Y6_LACCB Length = 325 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 127/332 (38%), Gaps = 31/332 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q ++ A + ++ +YLF G +G GK ++A +A L C+ PCG C C Sbjct: 10 QPKLVAQFARIIDRKQLAQSYLFVGPKGAGKLALAEWIALRLFCQNVQDGAPCGQCPECE 69 Query: 81 EIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I D++ + + KV+D R L + G +V+++++ ++ + N+L Sbjct: 70 RILNHNHPDVMVVKTETQSIKVDDIRGLKQEMSKTGVEGNQRVFVVEDADKMTAGAANSL 129 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK EEP + +L T +L TILSR ++ D + +LE E Sbjct: 130 LKFFEEPVPGMTVILTATSKNQLLPTILSRAQVITFQSPDRSAVIAKLE----------E 179 Query: 200 PRALQLLARAAE---GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 A +AR A G++ DA +L A A+ +V+ L+E + Sbjct: 180 GGATSQMARVAGRLTGNVADAQALL--ASATFQDRVTK--------------VFQLLERL 223 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + + E + + + + ++ + + A + + + L Sbjct: 224 ADHDPESFVRVQTQLLPIAKDADSQRQVLALIGLAYADALNQHFQVTSMQQLDLPAIGVL 283 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMG 348 A+ + Q +L + L + Sbjct: 284 AQR-SSEQLTTALQAILTAQVRLSQNVTFQSA 314 >UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosaccharomyces pombe RepID=WRIP1_SCHPO Length = 504 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 113/306 (36%), Gaps = 46/306 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP++ + VGQE ++ + N + R ++ + G+ G GKT++ARL+A Sbjct: 84 RPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRC-NSMILWGSAGTGKTTLARLIAV 142 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +CR+I + Y GR Sbjct: 143 TTKSRFIEISATSTTVADCRKIFEDSQ------------------------NYLTLTGRK 178 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DEVH +R + L +E+ + +L ++SRC F LK L Sbjct: 179 TIIFLDEVHRFNRAQQDIFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTR 238 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 + ++ L H E E + ++ +G R AL+ + +I G + Sbjct: 239 DNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDARMALNALEMSIGMLRQGPL 298 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S + + L G + D + +++ ++ + + + G + + Sbjct: 299 SLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGEDPLYVA 358 Query: 283 VEMLGL 288 M+ + Sbjct: 359 RRMVRI 364 >UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacteroidetes RepID=A5FMX8_FLAJ1 Length = 425 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 117/306 (38%), Gaps = 48/306 (15%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T D + Q H++ L +S G I + +F G G GKT++A+++A+ Sbjct: 4 PLAERIRPRTLEDYISQSHLVGPNGSLTQQISKGIIP-SLIFWGPPGTGKTTLAQIIAQE 62 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGR 119 +A + V+D RD+++ + + + Sbjct: 63 -------------------------SKRPFYELSAINSGVKDIRDVIEKAKQSGGLFTAK 97 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + IDE+H S+ ++LL +E+ + ++ +LSR + L A Sbjct: 98 NPILFIDEIHRFSKSQQDSLLAAVEKGWITLIGATTENPSFEVIPALLSRSQVYILNAFT 157 Query: 180 VEQIRHQLEHILNEEH----IAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDGQV 232 + + L + + + + L R + G R L++ + A AS + + Sbjct: 158 KDDLEALLHRAIKIDKELSSKNITLKETEALLRLSGGDGRKLLNIFELVVNASASDEIVI 217 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + V A++ G D + ++++ ++ + + G + + + Sbjct: 218 TNDRVLALVQQNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGEDVKFIA 277 Query: 283 VEMLGL 288 ML L Sbjct: 278 RRMLIL 283 >UniRef50_Q5UQ72 Putative replication factor C small subunit L510 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS4_MIMIV Length = 363 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 114/323 (35%), Gaps = 61/323 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+ +++L N G + H +LF G G GKTS + + + Sbjct: 7 VPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTH-FLFYGPPGTGKTSAILAMGREIF 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGR--- 119 E +IE +A+ + R+ + + + A + Sbjct: 66 KEHFQN-------------------RVIEFNASDDRGINAVREKITNEAKKYVAEIKLED 106 Query: 120 ------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 +K+ ++DE ++ + +AL +E+ +F K+ I SRC Sbjct: 107 GTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSV 166 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD----------- 222 + K L E + +L I +E + L + + G +R A+ L Sbjct: 167 YFKKLSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKN 226 Query: 223 -------------QAIASGDGQ------VSTQAVSAMLGTLDDDQALSLVEA-MVEANGE 262 + I + +S + V + ++ D+A +++ + N Sbjct: 227 LTKKLKDMTLLELKTILFMTKKSSITSTISEEDVYEISASITLDKAKGIIDDTIDCNNIV 286 Query: 263 RVMALINEAAARGIEWEALLVEM 285 V L + A G + +L ++ Sbjct: 287 EVSNLSKKIIAMGFPIDNILTQL 309 >UniRef50_A9NBZ0 DNA polymerase III, delta' subunit n=6 Tax=Coxiella burnetii RepID=A9NBZ0_COXBR Length = 319 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 126/328 (38%), Gaps = 30/328 (9%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 Q+ + GR+ HA L +G+ G+GK A+ +A+ + CE CG C C Sbjct: 5 WQQTQWQEILTRYRQGRLPHALLLTGSPGLGKFDFAKAVAEFILCE-AQDGGVCGSCRGC 63 Query: 80 REIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 + G D ++ + K+ R+L++ + ++V +I ++R + Sbjct: 64 QLFRAGNHPDFFKLIPEEKSKNIKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAA 123 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NA LKTLEEP + +L + P L TILSRC + A E L+ + Sbjct: 124 NAFLKTLEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQKQIE---- 179 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 G R+A+ L A+ + + ++ T D+ L L+ + Sbjct: 180 ---------------GDRREAIQLL---TAASYAPLQALQLKSLNYTEVRDRLLQLIINL 221 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 E +++ + +L ++ + + +QL + + ++EL Sbjct: 222 TAQR-ENAVSVAGTLL--KEDLPFVLQVLILIAMDLLRLQLKATNFV-VNSDQLILLQEL 277 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + +P I L Q L + + Sbjct: 278 STALPQNKIMLLLQELQEAWRLTKNSLS 305 >UniRef50_C9RG91 Replication factor C n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RG91_METVM Length = 544 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 114/285 (40%), Gaps = 24/285 (8%) Query: 52 TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDN 110 T+ A LA+ L E + +E++A+ ++ R + D Sbjct: 278 TTAALCLARDLFGENWRD-------------------NFLELNASDERGIDVIRTKVKDF 318 Query: 111 VQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 + P FK+ +DE L+ + NAL +T+E+ + +F+L+ P K+ I SR Sbjct: 319 ARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQSR 378 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 C F L E I +L+ I +E + L + +EG +R A+++ A A D Sbjct: 379 CAIFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQTAAALSD 438 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA-ARGIEWEALLVEMLGL 288 + + V + ++ ++E + L+ + G+ E +L +M Sbjct: 439 -VIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDILNQMFRE 497 Query: 289 LHRIAMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQTL 332 ++ + + + L + + + R+ E A I + + + Sbjct: 498 INNLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALM 542 Score = 81.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 + K+RP+T D+VGQ+ ++ L + + H LFSG GVGK Sbjct: 3 KPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPH-LLFSGPPGVGK 49 >UniRef50_A6NYA1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYA1_9BACE Length = 381 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 158/394 (40%), Gaps = 29/394 (7%) Query: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 +P +F D+VG ++++ L + LS G + +F G G+GK+S A+LLA L Sbjct: 4 KPTSFDDIVGHKNLIEFLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLALELMGRDPQVL 63 Query: 71 TPCGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 R I++ + + + + + + + +++ N+ + KV ++DE H Sbjct: 64 K--------RVIQENKSTESVLLYNMSINGGKDTAKEVEANLSLGLSGLDRKVIILDEAH 115 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 +S + L + E P+ V + TTD L T+ SR HL+ L + L Sbjct: 116 DMSEAAQETFLVSTEYLPKGVYLFMCTTDSLNLKATLKSRAFTLHLQHLTQADMVSLLTR 175 Query: 190 ILNEEHIAHEPRA--LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 + + + + A +Q++A A+G R AL+L + + VS+ + + L D Sbjct: 176 YVRDRGLRLQAEASTIQMIAAWADGKPRIALNLIEG--FAPGSAVSSATIKEFIDYLSVD 233 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L ++ + + + + +++I+E G ++ +L I V+ A+ + Sbjct: 234 DVLPVL-SCLSGSMTQGLSVISEMKLNG--------SLVPILVEILKVKSGMASFKLSLT 284 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPE 367 + R+R + + + L+ +L R G+ L++ + P Sbjct: 285 DVH-RIRAQLNGVSVETLTKFI-YLVAALPKLS-----RTGLISAFLQSHTDRSFLSSPP 337 Query: 368 PEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAP 401 P+ + T AP + Sbjct: 338 PKTEVLQSEMQQKLSAPTQDIAEASRPCAPSISE 371 >UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGH8_PETMO Length = 411 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 107/297 (36%), Gaps = 35/297 (11%) Query: 1 MS-YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS Q L RP+ +V+G E + L + ++ +++ G G GK++I R L Sbjct: 1 MSGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKV-RSFIIYGEPGSGKSTIVRALI 59 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + D+ I A + +D+++ Q + Sbjct: 60 NEI----------------------KDYYDVFSISGAIE-GKKKIKDIIE--QKNNLFTK 94 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K+ +DE+H L++ + LL ++E + + +LSR L F K L Sbjct: 95 PKLLFVDEIHRLNKAEQDTLLLSVETGELTLIGATTENPAISVNPALLSRVLVFKTKELI 154 Query: 180 VEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + I + + A + L A +R ++L + A +G + + + Sbjct: 155 TDDYEKLFQQIEDYYKDLKITKEARKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLK 214 Query: 239 AMLGT-------LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G + +++M ++ + + + G + + M+ L Sbjct: 215 DFTGYRLTYDKNAKYSFISAYIKSMRGSDVDAALLYLAYMLESGEDPMYIARRMVIL 271 >UniRef50_D1JAW3 Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAW3_9ARCH Length = 345 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 120/344 (34%), Gaps = 8/344 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q+ K+RP+ +++G V+ L + I + L G +G GKTS+ LA Sbjct: 3 QMWTEKYRPKRLHEILGHVEVVKRLNGFVMEKTIPN-LLLWGPKGTGKTSLVYALANEFY 61 Query: 64 CETGITATP-CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFK 121 + C R+ ++ + + ++ +P FK Sbjct: 62 GDDENLLRIECRDFIEQRKKWLKADKRFKFFYDEQKSAINIFKAMIKEYASLSPLNAPFK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + L + L + +E+ + +F+ +TT + I SRCL F +L Sbjct: 122 LLFFSNADYLPVYLQQGLRRVMEQSSKTCRFIFSTTKATSVIPAIRSRCLNFRFPSLAES 181 Query: 182 QIRHQLEH-ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ--AVS 238 L I + E + L+ L+ A+G A++L + A A+ + V Sbjct: 182 DAFGTLIRLISDAEGLKITEGGLKALSGYAKGDAGVAINLLE-AAATNSDTIDEDGLEVV 240 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLLHRIAMVQL 297 A A L+++ + + V A + I+ + +LVE+ L + Sbjct: 241 AENAFFQRRTAEELIDSAFASRHKDVRAGLEFLIRGERIDGKEILVEIHEALRSKMRAER 300 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 ++ + +L I + ++ + Y Sbjct: 301 KKSSKLFARLVLYEGEADLKLCYSLNTIIPLEEMMMKMSSQWRY 344 >UniRef50_B8F7F9 DNA polymerase III subunit delta n=9 Tax=Pasteurellaceae RepID=B8F7F9_HAEPS Length = 329 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 111/356 (31%), Gaps = 42/356 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + + + GR HHA LF G+G + R A Sbjct: 1 MNLYPW--------------HKQTHHQITSTFQQGRGHHALLFKTDSGLGTEQLIRHFAH 46 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTRDLLDNVQYAPARG 118 L C T PCG C +C + G D + ++ R++ +Q +G Sbjct: 47 WLLCHTPQQNQPCGQCKSCLLWQSGNHPDFHLLAPIDDKDIGIDQVREITAKLQQFAQQG 106 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 V + L+ + NALLKTLEEP ++V FLL + TI SRC + + Sbjct: 107 GNAVVYLAGAERLTEAAANALLKTLEEPNQNVYFLLEAPLQATMLATIQSRCQTWLVHTP 166 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + Q L+ E + ++ R + + Sbjct: 167 ESSQTFEWLQT----ECPTAQSSEIETALRLCHNRPLLCKTFLETDRLPSRK-------- 214 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 ++ V L + + + L + ++ Sbjct: 215 -----TFLQTFWRFYKS------RDVFLLFSAFDKEPEQVQQQLEWLGSFFSDALKAKMQ 263 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMT 352 A ++ + ++ + + +Q + +++L A ++ + + Sbjct: 264 IATGWL-NPDLQNGILPFSQQLTAQGLLKGHQIIQQTQRDLREVNAVNQELMLLDC 318 >UniRef50_Q49UZ3 DNA polymerase III delta' subunit n=64 Tax=Staphylococcus RepID=Q49UZ3_STAS1 Length = 309 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 37/337 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L ++ HAYLF G G +A K + C C ++E Sbjct: 6 ERLTKAYQSNKLSHAYLFEGDDGQTMQQVAIDFTKLILCNGDY------QCQ--LKVETF 57 Query: 86 RFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D + I + + K + L+ ++ P G +KVY+I+ L+ N++LK LE Sbjct: 58 NHPDFMYISSEETTIKKDQVEQLVHHMNQLPIEGDYKVYIIESFEKLTVQGENSILKFLE 117 Query: 145 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 +PPE+ +L TT P+++ TI SRC + K +D + ++L E + Sbjct: 118 DPPENTIAILLTTKPEQILDTIHSRCQHVYFKPIDKTKFINRL----------VEREITK 167 Query: 205 LLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERV 264 +A L + V+ + ++ + + ++ + Sbjct: 168 PVAE-----------LLSTYTTQIEVAVTLNEETDLMAL--RKSVVKWCQLLLTNRSMAL 214 Query: 265 MALINEAAARGIEWEALLVEML---GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 +A+++ + + LV + G + ++ ++ ++ ++ + Sbjct: 215 IAIVD-LLKQAKNRKLQLVTLAAVNGFFEDVMHAKVGMDQDMIYH-DLKEDIKAFSKKLT 272 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 I L Y + K+L + + E +++ + Sbjct: 273 YNQIILMYDQITEAHKKLNQNVNPMLVFEQIVIKRVN 309 >UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K1T7_SCHJY Length = 514 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 53/306 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+T D VGQE ++ + N + + + G GVGKT++AR++AK Sbjct: 87 RPLAERVRPKTLDDYVGQESLVGKGGIIRNLIERDECP-SMILWGNSGVGKTTLARIIAK 145 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGR 119 + A+ V D R + + Q G+ Sbjct: 146 TTGAHFLEVS-------------------------ATSASVSDCRKIFEESQNLLRLTGK 180 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH +R + L +E+ L+ +L +LSRC F LD Sbjct: 181 KTIVFLDEVHRFNRAQQDIFLPMVEKG------LITLNPSFRLNSALLSRCSVFTFNVLD 234 Query: 180 VEQIRHQLEHILNEE------HIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQV 232 + + L + E + + LQ ++ +G R AL+ + A+ G V Sbjct: 235 KDNVLSILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCLEIALGMLEGGSV 294 Query: 233 STQA----------VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 S V G D + +++ ++ + + + G + + Sbjct: 295 SLPDLKKKFARSFSVYDSTGDAHYDTISAFHKSIRGSDVDAALYYLCRMLESGEDPLYVA 354 Query: 283 VEMLGL 288 M+ + Sbjct: 355 RRMVRI 360 >UniRef50_C8NKG7 DNA polymerase III, delta' subunit n=3 Tax=Corynebacterium RepID=C8NKG7_COREF Length = 417 Score = 154 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 78/411 (18%), Positives = 148/411 (36%), Gaps = 81/411 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGR----------------------IHHAYLFSGTRGVG 50 + F ++ V+ L + + R H++LF+G G G Sbjct: 8 RVFDNLASPPAVVQTLIDAATTARQIARDGGAGAGAGDAGTARDSTFTHSWLFTGPPGSG 67 Query: 51 KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLD 109 ++ AR A L C CG C++CR D++ I ++ R ++D Sbjct: 68 RSVAARAFAAALVCSDPDEVG-CGRCEHCRATLADTHGDVVFIQPHELSIGIDLMRTVVD 126 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTIL 167 + P ++V +++ L+ + NALLKT+EEPPE +L TDP+ + VT+ Sbjct: 127 DAARLPTVSNWRVIILENADRLTEPAGNALLKTVEEPPERTIIILCAPSTDPEDIMVTLR 186 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC ++ +EQ + IL E E A +L A ++ G + A L + + Sbjct: 187 SRCRHVYIPTPTIEQ----VTRILVSEGGVAEDDA-RLAAASSGGHIGRARHL----VHN 237 Query: 228 GDGQVSTQAVSAMLGTL-DDDQALSLVEAMVEANGERVMALINEAAARGIE--------- 277 QV + + + DQA V ++++ + ++ + + E Sbjct: 238 QKVQVRRANILNLSELIFHGDQAFQAVNSLIKGIEKEMVETLEPLEEQEREKLETSLGMG 297 Query: 278 -----------------------------------WEALLVEMLGLLHRIAMVQLSPAAL 302 + L+++ G+ +V S A + Sbjct: 298 SRGKGVHKALQGTGGQLKALEDNQKKRRTRFLRDALDLALIDLAGIYRDALVV-ASGAEV 356 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 G +E ELA + P + + R+ + ++ + Sbjct: 357 GLTHPDMEGLSTELATKVTPEGLLDCLDAINKSREYFGQNVRPVVAMDALV 407 >UniRef50_UPI000192574D PREDICTED: similar to Werner helicase interacting protein 1 n=1 Tax=Hydra magnipapillata RepID=UPI000192574D Length = 527 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 107/315 (33%), Gaps = 51/315 (16%) Query: 4 QVLARKWRPQTFADVVGQEH--VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP F + GQ L +I + + G G GKTS A +++ Sbjct: 109 IPLAEQMRPNNFDNFYGQNSFGAKNLLKELFVSNKIP-SLILWGPPGCGKTSFAHIIS-- 165 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 R ++ +A+ + D +D + + R Sbjct: 166 ------------------RRCKESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRK 207 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+H ++ + L +E+ + + ++SRC +L+ Sbjct: 208 TVLFIDEIHRFNKMQQDTFLPYVEDGTIVLIGATTENPSFYINNALISRCHVVVFNSLET 267 Query: 181 EQIRHQLEHILNEEH--------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 E I L++ + + E AL L+A+ A G R AL+ D + + Sbjct: 268 EVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAKKESI 327 Query: 231 -------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAA 273 Q+S + + L G + +L +++ ++ + + + Sbjct: 328 HVSQANSQISCELIREELQRCCVNYDKAGDEHYNLISALHKSIRGSDVDASIYWLARMLE 387 Query: 274 RGIEWEALLVEMLGL 288 G + + ++ + Sbjct: 388 GGEKPLYIARRLIRI 402 >UniRef50_Q1YTP5 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTP5_9GAMM Length = 311 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 73/361 (20%), Positives = 126/361 (34%), Gaps = 59/361 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS L E +L + + GR+ HA L SG +G+GK +A LA+ Sbjct: 1 MSALPL------------PWHEDAWASLNSSIDSGRLPHAVLISGDQGIGKLRLATALAQ 48 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPAR 117 L C + CG C C G D+ ++ K++ R L +++ + Sbjct: 49 RLICSAEMVKYACGTCKTCNLFSAGSHPDITYLEPEEKGKAIKIDPVRKLCESLSKTAQQ 108 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 G +KV +I ++ ++ NALLK LEEP +L + P +L TI SRC + + Sbjct: 109 GGWKVAIIAPAEAMNINAANALLKNLEEPQSKTLLILVSHRPSRLSATIRSRCQKLSMPT 168 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + L + ++ A + + A G AL Q Sbjct: 169 PEADIALQWLTD------VTNDRIAAEQVLPLAGGRPLLALDYLQSDNLEQRRQF----- 217 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++ + D LV A + ++ E + +HR+A +L Sbjct: 218 ETLVAEVADGSLSPLVAAQQC---------------QKLDGEQSIDWFSRYIHRLATTEL 262 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + LAR L P+ +M E + + Sbjct: 263 ADKPNTALFGFSDKLL--LARNW----------ILS------GNNPNPQMLWEELFMDWV 304 Query: 358 A 358 Sbjct: 305 M 305 >UniRef50_A4ECY2 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4ECY2_9ACTN Length = 375 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 141/372 (37%), Gaps = 40/372 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 QE V L N ++ GR HAYLF G G GK A LA+ CE CG CD+C Sbjct: 15 QERVRDFLTNAVASGRASHAYLFLGAPGAGKLDAAWALAQAFLCEQ----DGCGACDSCV 70 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LLD+V AP R + KVY+ID L ++ NA Sbjct: 71 RVARHTHPDVHYYTPESATGYLIAQTRELLDDVPLAPIRAKAKVYIIDRAEQLRANTANA 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPPE V F+L T + TI+SRC + + + + Sbjct: 131 LLKTLEEPPEGVMFILLGTSADVMLPTIVSRCQCVPFRLVSPTVAARAVSRATGQ----- 185 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS---LVEA 255 A +A A GS + A + +A+ +++ + D L+ A Sbjct: 186 -DLARCRMAVAVAGSPTRGIEFLKSAERQDARRQMVRAIDSLIAADEADVLSRAKSLIVA 244 Query: 256 MV------EANGERVMALINEAAARG---------------IEWEALLVEMLG---LLHR 291 + ++ E+V+ + +RG E ++ + L+ Sbjct: 245 VKAPLAEVKSTQEKVLEQNADYLSRGALKQLEDRNKRELNARERSGIMEALASARTLMRD 304 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 + + L A + + LA + + + + ++ +E+ Sbjct: 305 VLL-TLQDEAADVVNEDVRDTIGRLAAATNVAGATRALEAVATAERNIARNVTPQLAIEV 363 Query: 352 TLLRALAFHPRM 363 L Sbjct: 364 MLFDIRKALKCR 375 >UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZZ0_DICTD Length = 431 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 123/359 (34%), Gaps = 54/359 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 SY+ L+ + RP+T + +G E + + L ++ G + + + G G GKT+++ LL Sbjct: 13 SYEPLSFRMRPRTLEEFLGAEDIIGEKSFLRKAINKGYLP-SLIIYGPPGSGKTTLSVLL 71 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PAR 117 AK +N E V++ ++ L + Sbjct: 72 AKAINAEFIELNAAI-------------------------VGVQELKEALQKAKRNLELY 106 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + V +DE+H ++ + LL +E + L T+LSRC LK Sbjct: 107 NKRTVLFLDEIHHFNKLQQDVLLPFVERGIMILIGATTENPFFSLNTTLLSRCRLVELKP 166 Query: 178 LDVEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--- 227 L E I ++ L E + A++ + R A G R AL+ + A Sbjct: 167 LSKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFANGDARIALNTLELASFMVAP 226 Query: 228 ---GDGQVSTQAVSAMLG----------TLDDDQALSLVEAMVEANGERVMALINEAAAR 274 G ++ V ++G + ++++ ++ + + + + Sbjct: 227 SENGKLIITRNIVKEVIGKRIFRYDQRGDEHYHTISAFIKSIRGSDPDAALYYLAKMLLS 286 Query: 275 GIEWEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 G + + ++ I M + + IP + +Y T Sbjct: 287 GEDPRFIARRLIIHAAEDIGMADPFALVIAQSAYYAVDVVGMPEARIPLAEATVYLATA 345 >UniRef50_A1WSZ0 DNA polymerase III, delta prime subunit n=1 Tax=Halorhodospira halophila SL1 RepID=A1WSZ0_HALHL Length = 351 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 131/346 (37%), Gaps = 39/346 (11%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVCDNCREI 82 L L GR+HHA L +G G+GK +A +LA+ L C+ PCG C C Sbjct: 28 LDRLLTLHDQGRLHHALLLTGRTGLGKRLLAGVLARALLCQADEGGGARPCGQCRGCHLT 87 Query: 83 EQGRFVDLIEIDAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 G DL + +S V+ R L+D + + RG +V +I L+R + N Sbjct: 88 GGGSHPDLRTLSPSSRGERGEIVVDSVRGLVDFLHLSAQRGGSRVAVIVPCDRLNRAAAN 147 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLKTLEEPP V +LAT P +LP T+ SRC L Sbjct: 148 SLLKTLEEPPPGVFLILATGRPGRLPPTVRSRCTVRGLTP-------------------P 188 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAMLGTLDDDQALSLVEAM 256 A + LA A G+ D+A+A G ++ + + G + L + + Sbjct: 189 AWDAARRWLAERAGGAEGRV----DKALALAGGMPLTAEQILHEQGLEGYESLLQQLHRL 244 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + EA A EAL + +L + + G + + ++ Sbjct: 245 SAGGDP-----VKEAEAWEGAPEALADAVTAILADLLRQRHGAPDRGLLPSPLAQQLVRE 299 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 A + + + R+ L + R+ E L A Sbjct: 300 A---SVEALHQAFLRIGEHRRGLEQPLNGRLAAEAIFLDLAAALRP 342 >UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria RepID=Q480Q0_COLP3 Length = 511 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 64/368 (17%), Positives = 124/368 (33%), Gaps = 78/368 (21%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S+ LA K RP+T AD VGQ+H+L + LA + G H+ +F G G GKT++A ++ Sbjct: 55 SFMPLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHC-HSLIFWGPPGSGKTTLAEII 113 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA-- 116 A+ N E + A + +++ R ++ + Sbjct: 114 AQHANAEIERVS-------------------------AVTSGIKEIRSAIEKAKLRAQGE 148 Query: 117 --RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 R V +DEVH ++ +A L +E+ +L +LSR + Sbjct: 149 GANKRRTVLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQALLSRARLYT 208 Query: 175 LKALDVEQIRHQLEHI---LNEEH---IAHEPRALQLLARAAEGSLRDALSLT------- 221 LK L + + L+ E I A Q L ++G R L+L Sbjct: 209 LKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCLDSS 268 Query: 222 -------------DQAIASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVE 258 +Q ++ V+ + ++ + G D + +++ Sbjct: 269 VTTHENKQDDQHGEQGVSGDIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSVRG 328 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAI 309 ++ + + G + + +L + + + + + Sbjct: 329 SSPDAALYWYARILTAGGDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFHRVGPSE 388 Query: 310 ELRMRELA 317 R A Sbjct: 389 GERAIAQA 396 >UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR Length = 553 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 114/323 (35%), Gaps = 56/323 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + + LA + RP+T DV+GQ+ +L+ L + + RI + + G G GKTSIAR + Sbjct: 124 NDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAIRCSRIP-SIILWGPPGTGKTSIARAI 182 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPAR 117 N QG +A V+D RD ++ + + Sbjct: 183 VTSAN-------------------SQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKN 223 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + V +DEVH ++ ++ L +E+ L +LSRC L Sbjct: 224 SKRTVLFLDEVHRFNKSQQDSFLPVIEDGTIVFIGATTENPSFHLVTPLLSRCRVLTLSP 283 Query: 178 LDVEQIRHQLEHI-----------LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 L ++ L+ L + A++ L+ +G R AL+ + + A Sbjct: 284 LKPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVALNALEISAA 343 Query: 227 SGDGQ-----------VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVM 265 + + V+ L G + +L ++M ++ + + Sbjct: 344 TAAARVGSDGDLRLASVALDDAKEALQSKHLAYDRAGEEHYNLISALHKSMRGSDADASI 403 Query: 266 ALINEAAARGIEWEALLVEMLGL 288 + G + + ++ Sbjct: 404 YWLVRMLEGGEQPLYIARRLVRF 426 >UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrobia RepID=B5JJN9_9BACT Length = 496 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 64/373 (17%), Positives = 120/373 (32%), Gaps = 61/373 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA + RP++ ++VVGQEH+L L + + LF G G GKTS+A +A Sbjct: 74 QPLAARLRPRSLSEVVGQEHILAPGKLLPRLVEANTFG-SLLFYGPPGCGKTSMAEAIA- 131 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + I+A V + R++L + + Sbjct: 132 -----------------------GETKSRFVRINAVMSN-VAELREILGIARR--MEDKD 165 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+H ++ + LL +E + + +LSR F L DV Sbjct: 166 TVLFIDEIHRFNKSQQDLLLPDVEAGNIRLIGATTHNPGFYVNAPLLSRSHLFRLNPHDV 225 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDGQ 231 + + L L +E I L+ LA+ +G LR L+ + G+ Sbjct: 226 DTVAATLAKALTDEERGLGERKITAVAGVLEGLAKLCDGDLRRGLNALEVIAMGLEEGGE 285 Query: 232 VSTQAV----------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ ++V D + +++M + + + + + G + + Sbjct: 286 ITEESVGVFASERQIRYDADEDEHYDTISAFIKSMRGGSPDGALYWLAKMLKGGEDPRFI 345 Query: 282 LVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ----------LYYQ 330 ++ + + +L + I Y Sbjct: 346 ARRLVVFASEDVGLADSGALSLAVATQQACDFVGMPECRINLAHCVSYMAAAPKSNSAYS 405 Query: 331 TLLIGRKELPYAP 343 L + P Sbjct: 406 ALAKALAAIEAGP 418 >UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycetaceae RepID=WRIP1_YEAST Length = 587 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 67/389 (17%), Positives = 134/389 (34%), Gaps = 67/389 (17%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA----LANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 S+ L+ K RP+ D VGQ+H+L+ L + G I + + G GVGKTS+ARL Sbjct: 131 SHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIP-SMILWGPPGVGKTSLARL 189 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PA 116 L K + + + +A++ ++ R + + + Sbjct: 190 LTKTATTSSNESNV--------------GSRYFMIETSATKANTQELRGIFEKSKKEYQL 235 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R V IDE+H ++ + LL +E + +L ++SRCL F L+ Sbjct: 236 TKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLE 295 Query: 177 ALDVEQIRHQL-----------EHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 224 L+V ++ L + + N E+ + L+ + + G R AL++ + Sbjct: 296 KLNVNELCIVLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLEMI 355 Query: 225 IASGD------GQVSTQAVSAML---------------GTLDDDQALSLVEAMVEANGER 263 S ++S V ++ G D + +++ + Sbjct: 356 EVSTRERKADEEELSIDDVRDIIKNNSSNGLNTYYDPKGDNHYDTISAFHKSIRGGDENA 415 Query: 264 VMALINEAAARGIEWEALLVEMLGL------LHR---IAMVQLSPAALGNDMAAIELRMR 314 + + G + + M+ + L + + + A+ Sbjct: 416 SLYYLARMLQGGEDPLYVARRMIRIASEDIGLRDSSLLPLAVAAHDAVMKVGLPEADLAL 475 Query: 315 EL-----ARTIPPTDIQLYYQTLLIGRKE 338 AR ++ ++ L E Sbjct: 476 AQCCVALARAPKSVELYRAWKKLRAMMSE 504 >UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ98_ALIAD Length = 447 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 67/455 (14%), Positives = 143/455 (31%), Gaps = 61/455 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ ++VG E+++ L + R+ + + G G GKT+IA ++A+ Sbjct: 17 PLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDRL-MSIILYGPPGTGKTTIAEVIARQ 75 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 I ++A + + D R ++ + R Sbjct: 76 ------------------------TKARFIPLNAVTS-GIADVRKAVETAREERDLYARR 110 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ +ALL +E + + +LSR F L+ L Sbjct: 111 TVVFLDEIHRFNKSQQDALLPHVEAGLLSLVGATTENPYFDVNAALLSRSHVFRLEPLSP 170 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 + I ++ + +E + P A ++L A G R AL+L + A + Sbjct: 171 DDIGRLVDMAIADEERGLGRMRVRLHPDARRVLTLQARGDARRALNLLELAAFAARVGPD 230 Query: 230 --GQVSTQAVSAML-----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 ++ + V A L G D + ++++ ++ M + + G Sbjct: 231 GATEIGMREVEAALEASGGPRYDRAGDDHYDTISAFIKSVRGSDVNAAMLWLAKMLEGGE 290 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + + ++ I + A N + + A I + ++ + Sbjct: 291 DPAFIARRLM-----ILAAEDVGMADPNALPIAVSGWQA-AMAIGMPEARIVLAEVTAYL 344 Query: 337 KELPYAPDRRMGVE-MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQS 395 + P + M + +PL + + P Sbjct: 345 AKAPKSNHAYMAINRALDDVRSGLPLEVPLHLRSTAYKGAKALGHGEGYLYPHDYPGHYV 404 Query: 396 APQQAPTVPLPETTSQVLAARQQLQRVQGATKAKK 430 P P + ++ Sbjct: 405 EQNYWPIGVEPRAYYREGDDDREDLDEGPLWPDAP 439 >UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Proteobacteria RepID=C6C7V1_DICDC Length = 447 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 121/350 (34%), Gaps = 61/350 (17%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 +Q LA + RP T A +GQ+H+L L + G++ H+ + G G GKT++A L+ Sbjct: 13 FQPLAARMRPTTLAQYIGQQHLLGPGKPLPRAIEAGQL-HSMILWGPPGTGKTTLAELI- 70 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G + A + ++D R+ ++ + GR Sbjct: 71 -------GRYGEADVERIS-----------------AVTSGIKDIREAVERARQNRNAGR 106 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH ++ +A L +E+ +L +LSR + LK+LD Sbjct: 107 RTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNSALLSRARVYLLKSLD 166 Query: 180 VEQIRHQLEHI-------LNEEHIAHEPRALQLLARAAEGSLRDALSLTD------QAIA 226 I L L +HI +LLA G R AL+L + + A Sbjct: 167 TADIEQVLAQAMVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEVDA 226 Query: 227 SGDGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGI 276 G ++ + A+ G D ++ +++ + + + G Sbjct: 227 DGQRVLTPALLKAVSGERSARFDNKGDRYYDLISAVHKSVRGSAPDAALYWYARIITAGG 286 Query: 277 EWEALLVEMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELA 317 + + +L + + + + A R A Sbjct: 287 DPLYVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQA 336 >UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI0_RHOVA Length = 455 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 126/350 (36%), Gaps = 45/350 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + + L + RP + DV+GQEH+L L ++ G + +F G G GKT++ARL+ Sbjct: 29 ASRPLPDRLRPASLGDVIGQEHLLGEGGPLRR-IADGEAPRSMIFWGPPGTGKTTVARLM 87 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AKG G + I +A + V D R + D + G Sbjct: 88 AKG----------------------AGAHFEQI---SAIFSGVADLRKVFDAAKDRQRFG 122 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DE+H +R ++ L +E+ + +L +LSR + L Sbjct: 123 QGTILFVDEIHRFNRSQQDSFLPFVEDGTIILIGATTENPSFELNGALLSRAKVLVFRRL 182 Query: 179 DVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG---QVS 233 + I L + + P A L A+G R AL+LT+ A+G + Sbjct: 183 TDDNIEQLLARAESVLGKTLPLTPDARGALIGMADGDGRTALNLTEDVFATGRDPSHPID 242 Query: 234 TQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 T ++ ++ D +L +A+ ++ + + G L Sbjct: 243 TAELTEIVQRRAPLYDKNRDGHYDLISALHKAVRGSDPDAALYWFCRMIDGGEAPLYLAR 302 Query: 284 EMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 M+ + + I + + N + + +Y T Sbjct: 303 RMVRMAVEDIGLADPNALVQANAAKDAYDFLGSPEGELALAQCVVYLATA 352 >UniRef50_B2GAE3 DNA-directed DNA polymerase III delta prime subunit n=13 Tax=Lactobacillus RepID=B2GAE3_LACF3 Length = 346 Score = 152 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 113/341 (33%), Gaps = 33/341 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q + A+ + G + HAYL G +G ++A +A L C P C C Sbjct: 11 QPEITARFASLIERGTLAHAYLLVGNVNMGTVALATEVALRLFCPHQDDQGHPDRTCPEC 70 Query: 80 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + G D++ + KV+ R L G KV++I+ L+ + N+ Sbjct: 71 QRVLSGNHPDVVVARPEGRQIKVDQVRYLKAEFSKTGVEGEKKVFIIEGAETLTGSAANS 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP V L T + + T+ SRC L+ L E ++ QL+ Sbjct: 131 LLKFIEEPGPGVYIFLLTPNKNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGV------ 184 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 P L LA S + SL + + + Sbjct: 185 -PEYLGPLAAGLGLSAKQGASLMEDDWL----------------PTSVKLVFDWFKEVAS 227 Query: 259 ANGERVMALINEAAARGIE---WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + + + +G + LL + + +++ E Sbjct: 228 GDPLSFVDVQTGFLKQGSDRAKQLVLLDLVTMVWRDALLLKNRVTEPERLHFRQWQ--AE 285 Query: 316 LARTI---PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 +A+ I + + + L GR L + VE Sbjct: 286 VAQLIMPSSAQQVLVASELTLEGRHLLDQNISFQNVVEQLT 326 >UniRef50_B2KER2 DNA polymerase III, delta prime subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KER2_ELUMP Length = 320 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 118/364 (32%), Gaps = 64/364 (17%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET---GITAT 71 F D++GQE + L ++ GRI A LF G +G GK A+ A LNC Sbjct: 2 FRDILGQEKTINQLKKFIASGRIPQAMLFYGPKGTGKALTAKKFAMALNCTDEAARAEFD 61 Query: 72 PCGVCDNCREIEQGRFVDLIEIDAASRTK-------------VEDTRDLLDNVQYAPARG 118 CG C NC+ I D + D A + +E RD+ Q Sbjct: 62 SCGTCLNCKNIIANTHPDFVWGDFAYQAGLTGKEVEKQQHMNIEAVRDMTTKSQQKIMTA 121 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R+KV ++D + + NALLK +EEP + ++L + TI SRC L Sbjct: 122 RYKVLVLDHAETMLPDAANALLKFIEEPAANTVWILNCAKKDLMLSTIKSRCQAVPFAPL 181 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 + + L + AR + GS A + V Sbjct: 182 KAKNVVDILTF------CGIDADLAARAARFSGGSAGKAREVI--------------NVL 221 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L D + E L A E +L LH + + Sbjct: 222 ENLNGADA--------SAETFPYEAAATLSRTLAQARGEAYVILDMAAQGLHDMWTKEKD 273 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 I+ ++++ + + R + + +E L+ Sbjct: 274 VQ--------IKEKIKQTLKQLSY------------YRYAVSRNVSPSLALETALMETGE 313 Query: 359 FHPR 362 F+ + Sbjct: 314 FNQQ 317 >UniRef50_C2GG64 DNA polymerase III subunit delta n=2 Tax=Corynebacterium glucuronolyticum RepID=C2GG64_9CORY Length = 403 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 131/404 (32%), Gaps = 96/404 (23%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI---------------------------- 68 + HA+L +G G G++++AR A L C + Sbjct: 1 MTHAWLITGPPGSGRSTMARHFAAALLCTADVVGGSGACDDAGGSGARDDAGGSGVRDDA 60 Query: 69 ---------------TATPCGVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQ 112 TPCG C+ CR+ G +DL + VED R ++ Sbjct: 61 DGSGVRDDADGSGACDGTPCGQCEGCRQALNGSHLDLTVVHPTELSISVEDMRAVIRGAS 120 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTILSRC 170 P G F+V +I++ L+ + N+LLKT+EEPPE +L TDP+ + T++SRC Sbjct: 121 RTPTVGAFRVVIIEDADRLTPAAGNSLLKTVEEPPERTVIILCAPSTDPEDMLQTLVSRC 180 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 ++ E++ + + H+ L A A G + A L Sbjct: 181 RHVYIPTPSFEEVAATV----EASGVPHDQALLA--AHATAGHIGRARHLAQDPTTQRRR 234 Query: 231 QVSTQAVSAMLGTLD----------------DDQALSLVEA------------------- 255 + D + L++A Sbjct: 235 ARMLHLAELLFSGSDAYLEVTSLLSDVESDVKARIKELLDADLERTRLTLGAGGSGKGTG 294 Query: 256 MVEANGERVMALINEAA------ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 V ++ + + + LL++ + L A+ Q + A L Sbjct: 295 GVMRGTADILKKVEQKYKKQQTRELRDTIDQLLMDFIALFRD-AIAQRAGAPLL--HTDF 351 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++LA + + T+ R+ + R + + Sbjct: 352 AGDSQDLAARLSDAQLIATIDTIGRARERITRNVTPRTALFAMI 395 >UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A0RRQ8_CAMFF Length = 397 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 38/292 (13%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L+ +RP D+VGQ+ ++ + + +I H+ LF G G GKT++A+++AK +N E Sbjct: 3 LSNDFRPNNINDMVGQKDIVELFSKFIKSKKIPHS-LFFGATGCGKTTMAKIIAKQMNYE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 E+D A K ED R ++ + + I Sbjct: 62 ------------------------FFELDGA-NLKSEDIRKIISKFETTLY---KPLIFI 93 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE H LS+ LL +E+ V + I SR + F K L +++ Sbjct: 94 DEFHRLSKTQQETLLIPMEKGKCIVMGATTENPKFVVSSGIRSRMMIFEFKPLSHDELTI 153 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-------GQVSTQAVS 238 L + N A L ++ G R L+L + A+++ + + VS Sbjct: 154 LLTKVQNVIKFEITNEAKDYLINSSGGDARSLLNLLEFALSADKSIGLNILKTLRSHRVS 213 Query: 239 AML--GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + + +L++++ ++ + + + G E L M+ Sbjct: 214 EGVSNSDTHYELTSALIKSLRGSDIDASIYYLARLIQGGEEPAFLARRMVIF 265 >UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacillales RepID=C6D7W1_PAESJ Length = 436 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 57/352 (16%), Positives = 122/352 (34%), Gaps = 52/352 (14%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 ++LA + RP+T D +GQEH++ L + ++ + L G G GKT++A +++ Sbjct: 14 ARLLADRMRPETLDDYIGQEHIIGAGKLLRRAIEGDQVS-SILLYGPPGCGKTTLANIIS 72 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARG 118 K E A V+D R+++D + G Sbjct: 73 KRTAGEFVKLN-------------------------AVDASVKDVREVIDTAKTNKLMYG 107 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DEVH + +ALL +E+ + +LSR F L+ L Sbjct: 108 KKTILFLDEVHRFNTSRQDALLPAVEQGIIIFIGATTENPFHHVNGALLSRSTLFQLEPL 167 Query: 179 DVEQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + + ++ L ++ + E ALQ +A A G +R AL+ + A + + Sbjct: 168 NEKHALEAMKRALTDKDRGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVTTPSE 227 Query: 232 ------VSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 ++ + + + D + +++ ++ + + G++ Sbjct: 228 PDGSVRITMEVAQESIRKPTVRADTSTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMD 287 Query: 278 WEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 L ++ I + ++ L+ Sbjct: 288 PMTFLRRLIVACSEDIGLANPQAMVQAVTAMDAYHKIGWPEAKYNIAQAILF 339 >UniRef50_B8GSK5 DNA-directed DNA polymerase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSK5_THISH Length = 321 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 130/332 (39%), Gaps = 35/332 (10%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCR 80 E L L+ GR+ HA L +G G+GK ++A LA C + PCG CD+CR Sbjct: 9 EDAYRQLLGRLAGGRLPHALLLTGPVGIGKRALAESLALAALCTAPGVEGAPCGHCDSCR 68 Query: 81 EIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 DL + + ++ V+ R+L + + + + G +V L+ ++ ++ N Sbjct: 69 LYRADTHPDLTRVTIPEDKTQIVVDQIRELSETMGLSRSMGAHRVALLWPAEAMNPNAAN 128 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 +LLKTLEEPPE +L + +P +LP TI SRC + E R L Sbjct: 129 SLLKTLEEPPERTLMILVSAEPSRLPATIRSRCQTLAVPLPPDEITRAWLA------GQG 182 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 + + L A G+ A L ++ + G ++L E Sbjct: 183 VQAGQVDALLCLARGAPLVARDLAEEGALEQWHALLGDLSQLTRGKTGT---VALAERWK 239 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + ER++ + +IA+ + + A AA ++ LA Sbjct: 240 AQDTERLIRWV----------------------QIALWESARIAFTGRAAAGREDLQPLA 277 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 +T+ I L R+ + +M + Sbjct: 278 KTLDLGRIFQLQDRLTEWRRLARTTVNPQMLL 309 >UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IXK5_MYCAP Length = 404 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 117/344 (34%), Gaps = 53/344 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA + RP+T D++GQ+ V+ L ++ +I+ +++F G G GKTS A LA L + Sbjct: 4 LANELRPKTLDDIIGQKSVVELLKK-VARDKIYSSFIFFGESGTGKTSAAVALANDLGLK 62 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 +A+ +K E + L DN V +I Sbjct: 63 YD------------------------YFNASVNSKAELIKMLADN----------DVLII 88 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE+H L++ + LL LE + ++ + SR L +++ Sbjct: 89 DEIHRLNKDKQDILLSYLEFDKIIIYATTTENPYFRVNPALRSRMQILQFTKLSEQEMFE 148 Query: 186 QLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAML- 241 ++H L + + +++ + + G R L+ + Q+S + + Sbjct: 149 GIKHNLKKYFPDYQMDESTIKVFVKLSNGDYRSCLNNLQILTLMSKNKQISLDDIKKFVP 208 Query: 242 ---------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + + + +++ ++ + + G + + Sbjct: 209 NISFYSDENSSAHYNNLSAFHKSLRGSDVDAALYYGAIIVKSGDLQGLFRRLIACSYEDV 268 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + + + + +P + ++Y + + Sbjct: 269 GLADPNLQIRVKNAIDCAELL-----GLPEARLPIFYAIISVAL 307 >UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7J3_PHYIN Length = 499 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 109/312 (34%), Gaps = 51/312 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA + RP D+VGQE +L + L+ + R+ + + G G GKT++A ++ Sbjct: 82 SAVPLAERMRPTDLNDLVGQEELLGPGSLLSTLIEADRVPN-MILWGPPGCGKTTLAHVI 140 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPAR 117 +K C+ + +K D +D +D + Sbjct: 141 SKKTGCKFISLSGA-------------------------TSKAGDMKDAVDRARGERKMF 175 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R + +DE+H ++ + L +E+ + ++ +LSRC + LK Sbjct: 176 RRRTIVFVDEIHRFNKIQQDFFLPPVEDGTITLIGATTENPSFEVNNALLSRCRVYSLKK 235 Query: 178 LDVEQIRHQLEHIL---NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-----D 229 E I L L ++ E A++ L G R AL+ + AI + Sbjct: 236 HTPESIERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEMAIQTAPIDPDK 295 Query: 230 GQVSTQAV-------------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 + A+ + D +L +++ ++ + + G Sbjct: 296 RVLRVSAIHVQHCFAHRQTLFYDRNADMHYDVISALHKSIRGSDENATLYWLARMLEGGE 355 Query: 277 EWEALLVEMLGL 288 + ++ + Sbjct: 356 NPLYVARRLIRV 367 >UniRef50_D1R593 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R593_9CHLA Length = 367 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 134/372 (36%), Gaps = 42/372 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ + G + + L + I + LF+G G+GK+ A+ A+ L G Sbjct: 7 FSHICGNDPIKHYLIKMIEKNAIGQSLLFAGPEGIGKSLFAKAFAEILLTN--------G 58 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 D ++++ DL + ++ R L + + P + + KV++I E + Sbjct: 59 SADQRKQVKAETHPDLHIYRPEGKLGMHSIDAMRQLTEEIYLVPYQAKRKVFIIHEAERM 118 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 +S NALLKT EEP +L T+ P+ L TI SR + + ++ + + + Sbjct: 119 LPYSANALLKTFEEPALDCVIILLTSLPENLLPTIRSRFQTIYFQEVEKKYLVKFV---- 174 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV--------------STQAV 237 +E+ + Q +A +++GS A L Q + + V Sbjct: 175 -QENFQKTEQEAQTIAASSKGSFVQAARLCSQKKTYYQDILLPLLAAGRFSSYGALLETV 233 Query: 238 SAMLGTLD----------DDQALSLVEAMVEANGERVMALINEA--AARGIEWEALLVEM 285 + L+ + S +E + E + I E LL + Sbjct: 234 RQLTDQLEQSKKQVEEEMRQELSSHLENLTAVQKESLEKEIEGFVSVQTNRETTHLLDFI 293 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L + ++++ ++ + + I+ + + RK L + Sbjct: 294 LSWYRDLELIRVKGDPTFLFHKDAYNQLEQSIQQGNRLSIEHVQKAISDARKALERSSSI 353 Query: 346 RMGVEMTLLRAL 357 + +E L+ Sbjct: 354 GITLENLFLKLH 365 >UniRef50_B1VI07 DNA polymerase III, delta' subunit n=2 Tax=Actinomycetales RepID=B1VI07_CORU7 Length = 448 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 75/405 (18%), Positives = 134/405 (33%), Gaps = 81/405 (20%) Query: 22 EHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 + V LA ++ + H++LF+G G G++ A+ A GL C G CG C+ C+ Sbjct: 40 QPVRELLAGAVANPQAMTHSWLFTGPPGSGRSIAAKAFATGLVCPNGG----CGECEQCQ 95 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 G D++ I VED R+++ + P R++V ++++ L+ NAL Sbjct: 96 SAATGTHPDIVWIATTGSVIPVEDVREVISSAASMPTVSRWRVVVVEDADRLNEAGSNAL 155 Query: 140 LKTLEEPPEHVKFLLAT--TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LK++EEPP H F+L TDP + +T+ SRC ++ +Q+ L L + + Sbjct: 156 LKSVEEPPAHTVFVLCAPSTDPLDISITLRSRCRHVYIPTPSPQQVEDVL---LQDASLG 212 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ---VSTQAVSA---------MLGTLD 245 + A + G + A L A Q V L Sbjct: 213 ITQEQARWAAGVSGGHIGRARHLARDEAARTKRATALKLPQMVYEGARLFSFTSQLVAKA 272 Query: 246 DDQALSLVEAMVEANGERVMALI--------------------NEAAARGIE-------- 277 ++ + VEA+ E + + E Sbjct: 273 TEEVAAQVEAVEAKEREALEESLGVGAKGRGAAKAQRGSAGQMKELEREQKNRRTRMVRD 332 Query: 278 -WEALLVEMLGLLHRIAMVQLSPAALGN-----------------------------DMA 307 + L++++GL + Sbjct: 333 ALDLALIDVVGLYRDAMLQAAGAVEPVGGSADAAEVATGDTDGTAAAAHGLQPVGGFQHP 392 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + ELAR P + + R+ L + ++ Sbjct: 393 DMRATSGELARRNSPEALVRCIDAVSACRETLGMNVKPEVALDAL 437 >UniRef50_O34528 Uncharacterized AAA domain-containing protein yrvN n=349 Tax=cellular organisms RepID=YRVN_BACSU Length = 421 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 58/375 (15%), Positives = 121/375 (32%), Gaps = 66/375 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP D++GQ+H++ + + + + + G G+GKTSIA +A Sbjct: 2 KPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLS-SMILYGPPGIGKTSIATAIA- 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +++A K + ++ V Sbjct: 60 -----------------------GSTSIAFRKLNAVINNKKD-----MEIVAQEAKMSGQ 91 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++DEVH L + + LL LE + + I SR F L+ L Sbjct: 92 VILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTP 151 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTD------QAIAS 227 E I+ LE L++EH ++ + +A++ A G +R AL+ + + A Sbjct: 152 ELIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESAD 211 Query: 228 GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G+ ++ + L G D + +++ ++ + + G Sbjct: 212 GEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGDL 271 Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ----------L 327 ++ I + + R+ IP + Sbjct: 272 ESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSPKSNS 331 Query: 328 YYQTLLIGRKELPYA 342 + ++ Sbjct: 332 AILAIDEALADIRAG 346 >UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacteria RepID=C5RHF7_CLOCL Length = 424 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 118/353 (33%), Gaps = 52/353 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RPQ +VVGQ H++ L + I + +F G G GKT++A ++AK Sbjct: 2 KPLADRLRPQVIEEVVGQSHLIGQNKILTKIIESQHIPN-MIFYGPPGCGKTTVANIIAK 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 N A+ +D ++++ + + Sbjct: 61 ATNKR-------------------------FFKLNATNASTKDIKEIILELDTF-MGAKG 94 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+ ++ +LL+ +E + + ILSR F K + Sbjct: 95 VLLYLDEIQNFNKKQQQSLLEFIENGSITLIASTTENPYFYVYNAILSRSNVFEFKMVSS 154 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 + I L + I E AL+ ++ A G +R AL+ + A+ S Sbjct: 155 DDIEKALMRAVEVLQNDFKSSKILLEDEALKYISAIAGGDVRKALNALELAVFSSKAKDN 214 Query: 231 --QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ A G D + +++ ++ + + + G Sbjct: 215 IIKIDINAAYDATQRKIMNFDKDGDGHYDVLSAFQKSIRGSDADAAVHYLARLIRGGDLL 274 Query: 279 EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 M+ I + S ++ L++ IP + + T Sbjct: 275 SICRRLMVIACEDIGLAFPSAISIVKSCVDSALQLGFPEARIPLAEATILLAT 327 >UniRef50_A3ZYH4 DNA polymerase III, tau/gamma subunit n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZYH4_9PLAN Length = 357 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 120/362 (33%), Gaps = 38/362 (10%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 ++ ++ G + V ++ GR+ +LF G VGK A LA+ L CE A Sbjct: 1 MSWDEIQGHDAVQAKFRTAVARGRLASTFLFVGPPAVGKRKFALKLAEALLCEVNPPADL 60 Query: 72 -PCGVCDNCREIEQGRFVDLIEIDAASRT-----------KVEDTRD-LLDNVQYAPARG 118 PCG C++C ++ DLI + + R L ++ P RG Sbjct: 61 NPCGKCESCVQVRAHSHPDLILVSRPANRTRIPVDLLIGDGQNRMRAGLCHDITLRPYRG 120 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 KV +ID+ L+ N LLKTLEEPP +L +T Q+ TI SR L Sbjct: 121 GRKVAIIDDADYLNVEGANCLLKTLEEPPPKSVMILLSTSLQRQLPTIRSRSQIIRFDPL 180 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 E I L + + E ++LA GSL A+ + D + + + Sbjct: 181 SNEVIAALLVE----QGVVAELEEARVLAELGHGSLERAMQVADPELREFRAVLLPR--- 233 Query: 239 AMLGTLDDDQA---LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 LGT D E + A E E L R Sbjct: 234 --LGTPDFPSVPLAKETAEFVDRAGKEAPPRRARLIL-----VMQFAAEFYEQLMRALCG 286 Query: 296 QLSPAALGNDMAAIELRMRELARTIP--PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + ++ P + +E+ + V+ + Sbjct: 287 RAVAGDDLL-----RKQVERAVPRFTAGPDAAAACLARCIEAEQEVEANANLATLVDAWM 341 Query: 354 LR 355 Sbjct: 342 DD 343 >UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacteria RepID=B1ZVQ2_OPITP Length = 448 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 72/457 (15%), Positives = 138/457 (30%), Gaps = 58/457 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA + RP+ A+VVGQ H+L L ++ R + +F G G GKTSIA +A+ Sbjct: 27 QPLAARMRPRRLAEVVGQSHILKPGSLLPRLVAQNRFG-SLIFYGPPGCGKTSIAEAIAQ 85 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 N A + V + R++L + + P Sbjct: 86 ETNSRFVRVN-------------------------AVMSNVAELREILHSARRLPQAS-- 118 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ + LL +EE + + +LSR F L+ L Sbjct: 119 TILFIDELHRFNKSQQDLLLPDVEEGTVRLIGATTHNPGFYVNPPLLSRSHLFRLEPLSP 178 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQ 231 + L+ L +E + + + L LA +G LR AL+ + + G Sbjct: 179 AAVTGVLKKALADEERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVLVLGLPEGGV 238 Query: 232 VSTQAVS----------AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + D + +++ ++ + + + + A G + + Sbjct: 239 ITPAELEVFARERRIRYDADEDEHYDTISAFIKSCRGSDPDAALYWLAKMLAGGEDPRFI 298 Query: 282 LVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 ++ L + + L + + LY T Sbjct: 299 ARRLVILASEDVGLADPQALPLTVAAHHAVDFIGLPEAELTLAHATLYIATAAK------ 352 Query: 341 YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + + + Q + Q Sbjct: 353 -SNSATLALGEAHRALKEQPVQTIPAALRSKSGQANKRIGQGQGYLYSHDHQENISGQDY 411 Query: 401 PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAAT 437 PL T + + ++ K KS Sbjct: 412 LEKPLTLYTPKPVGWEAKIVDRLARWKELKSRLQQRA 448 >UniRef50_C7MGG0 DNA polymerase III, gamma/tau subunit n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MGG0_BRAFD Length = 394 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 131/376 (34%), Gaps = 47/376 (12%) Query: 15 FADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 +ADVVGQE + S G + A+L +G G G+++ AR A L CE G C Sbjct: 19 WADVVGQEAAVAQFRRAASPEGSLAQAWLVTGPPGSGRSTAARAFAATLQCEQGTG---C 75 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR D+ + E+ R L+ Q APA G +V +I++ +S Sbjct: 76 GQCRACRTTLANTHPDVTVVATDKLSIAKEEVRALVMTAQRAPATGNRRVVIIEDADRMS 135 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 +FN LLK++EEPP ++L + L TI SRC L + L Sbjct: 136 AGTFNVLLKSIEEPPPATVWMLCAPSAEDLAPTIRSRCRLVTLAVPSSAVVADLLRRR-- 193 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST----------QAVSAMLG 242 + + ARAA+G + AL Q A + S QAV A G Sbjct: 194 ---DGIDEQLAVRAARAAQGHIGLALRYATQEGALAAREDSARTLLSLRGTGQAVLAAQG 250 Query: 243 TLDDDQALS--------------LVEAMVEAN---GERVMALINEAAARGIE-------- 277 +D A + + + + + + + + Sbjct: 251 LVDRATAEAKEHADVVAAEEKERFLRSAGIDDGKVPPSLRSQVRQLEEDAKRRQTRLVRD 310 Query: 278 -WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + L++ +L + + A + + + A + + R Sbjct: 311 VLDRYLLDAHSVLRDVL-SRQLGTAAELVNLEVAGEIEDAAGHGSGKITLGLLEAVQEAR 369 Query: 337 KELPYAPDRRMGVEMT 352 + + +E Sbjct: 370 DRISGNVPPLLAIEAL 385 >UniRef50_Q47DZ6 DNA polymerase III, delta prime subunit n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DZ6_DECAR Length = 339 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 133/357 (37%), Gaps = 41/357 (11%) Query: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNCRE 81 H L R+ H+ L G +G+GK +AR A L CE+ + CG C C Sbjct: 7 HSKVWLGLQARRERLPHSLLLVGQKGLGKFELARRFAASLLCESPQSNGLACGKCLACNW 66 Query: 82 IEQGRFVDLIEI----------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 EQG D + + + ++ R L + RG ++ ++ Sbjct: 67 FEQGNHPDFRLLQPDALGEDVEVEDGKKKPSQQITIDQVRALDEFFNVGTHRGGLRIVIV 126 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 + ++R + N+LLKTLEEP FLL +++P +L TI SRC + Sbjct: 127 NPTEAMNRSTANSLLKTLEEPSADTLFLLVSSEPMRLLPTIRSRCQVVPVPVPS----AK 182 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 IL +E + R L A GS AL L A+ + + A LG Sbjct: 183 LAGKILADEGLQQSERWLA----LAGGSPVLALDL-----AASGQSAWIELLVARLGNGR 233 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 + L++ + +A + L+ + ++ + L + + + Sbjct: 234 NADPLAMAAELEKAVKDSKGKLL---------LKHVVEGVQKWLVDLTLAKNGM--PVRY 282 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + LA IP + Y+ ++ R+E + R+ +E L A Sbjct: 283 FLPQQPTISGLADMIPAARLIHSYRAVISRRQEAEQPLNARLFLEGLFLDYRALFAN 339 >UniRef50_A6BZZ4 DNA polymerase III, tau/gamma subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZZ4_9PLAN Length = 353 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 135/345 (39%), Gaps = 33/345 (9%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PC 73 + G +L L LS R+ HA LFSG G+GK +A LA+ L C C Sbjct: 6 DSIRGHHPILEMLDRALSRSRLPHALLFSGAAGIGKKRVALHLAQCLFCLQTPADELSCC 65 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKV--------EDTRDLLD----NVQYAPARGRFK 121 CD+C+++ G DLI I+ + +D + + P G + Sbjct: 66 RTCDSCKQMAAGTHPDLISIECPPDKNILPLSLIIGDDDHRGREGVCYEMSLRPMVGDRR 125 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +ID+ ++ S NALLKTLEEP + +L ++ + TI SRC L E Sbjct: 126 IAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLIRFNRLTQE 185 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 + L ++++ + E +A++ +AR + GSL A L D+ + S G ++ L Sbjct: 186 DVAALL---IDQQLVESEDQAIE-IARLSAGSLNIARQLLDENLQSLRGNITR------L 235 Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301 + Q + E++ + + + AA+ ++ H+ Q + A Sbjct: 236 LSRHPFQPQAFSESV----IQAIDDVGGNTAAQRKTALWVIKFCADFYHQSL--QCAAAY 289 Query: 302 LGNDMAAIELRMRELARTIPPTDIQ---LYYQTLLIGRKELPYAP 343 A I+ +L +++ Sbjct: 290 QAAPTAGNVESFVAGLPGETEDRIETIGNLLSRMLQTEEQINQNV 334 >UniRef50_C5R923 DNA polymerase III subunit delta n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R923_WEIPA Length = 334 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 127/335 (37%), Gaps = 27/335 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNC 79 Q ++ L L+ ++ HA+LF+G G G+ +A LA L C+ P G CD C Sbjct: 14 QPQLIAQLQKALASQQLAHAFLFTGPAGRGQELVADWLAMRLMCQHVTADGQPDGTCDQC 73 Query: 80 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I Q D+IE+ KV+ R L + G+ K++++ ++ + N Sbjct: 74 QRIVQHEHPDVIEVHPDGKSIKVDQVRFLKEEFTKTAVEGQQKIFIVAGADTMTTSAANG 133 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP +L + ++ TI+SR A+ EQ +L + + Sbjct: 134 LLKFIEEPAPGQTAILIAENRAQILPTIISRTQVIAFAAVGNEQFEEEL------LSLGY 187 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + L+ + S A Q ++ VSA+L D A +LV+ + Sbjct: 188 HADEVSLVQSLTD-SKVVAEEWLIDDWFRQATQATSSLVSAILKNSDQ--AFTLVQTLY- 243 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + + + LL+ + I +++ + + Sbjct: 244 --VPLALDIAHG--------KTLLMMLAQAWRDILLLKTGVQ-----NSHFANDWSREVQ 288 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + +L ++L + + +E T+ Sbjct: 289 RFDTKTLLAVINIVLSAPQQLEKNINFQTTLEATI 323 >UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1KXC3_CLOBM Length = 416 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 68/421 (16%), Positives = 148/421 (35%), Gaps = 56/421 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ D VGQ+H+L L N + I ++ +F G G GKT++A ++A Sbjct: 2 RPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNS-IFYGPPGTGKTTLANIMAN 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 ++ + A+ ++D +++ ++ Sbjct: 61 YVDKK-------------------------FYRLNATTASIKDIQEITSSINSLLNYSGV 95 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+ ++ ALL+ +E+ + + ILSRC F K L+ Sbjct: 96 -VLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNR 154 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG---QV 232 E I LE +N+ +I + +L+ + +G R A ++ + A+ S G ++ Sbjct: 155 EDIILGLEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNIEI 214 Query: 233 STQAVS---------AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + + G + + +++ ++ + + + G + ++ Sbjct: 215 TLDYIESLAQSNIRADATGDEYYNILSAFQKSIRGSDADAAVHYLARLIKSG-DITSITR 273 Query: 284 EM-LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + + + I + P AL + I ELA + + Q+ + I LP + Sbjct: 274 RLSVMVAEDIGLAY--PNALTIVNSGI-----ELALKVGFPEAQIILSEITIYLATLPKS 326 Query: 343 PDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPT 402 + ++ + + + + A + + P Sbjct: 327 NSAYIAIKNAMRDLESVNFGDVPDYLKDSHYHGAKNLGVEGYKYPHDFNNHYVSQEYLPK 386 Query: 403 V 403 Sbjct: 387 E 387 >UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bacteria RepID=B8DU13_BIFA0 Length = 504 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 88/519 (16%), Positives = 170/519 (32%), Gaps = 75/519 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVL------TALANGLSLGRI--HHAYLFSGTRGVGKTSIA 55 + LA + RP T +VVGQ HVL LA+ S G + + + G GVGKT++A Sbjct: 17 RPLAVRMRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLA 76 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA- 114 ++AK E +A + V+D R++L Sbjct: 77 HIVAKQ-------------------------SGRQYEELSAVTSGVKDLREVLRRAHERL 111 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 ++G+ V IDEVH S+ +ALL ++E + +LSR + Sbjct: 112 VSQGKETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKPLLSRSVVVK 171 Query: 175 LKALDVEQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L++L+ E++R +E ++ + + A+ + R A G R +L++ + A + D Sbjct: 172 LESLEPEELRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAAAGAVD 231 Query: 230 G-------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAA 272 +++T VS ++ G D + +++M ++ + + + Sbjct: 232 ESGSNVPAEITTDVVSTVMDVAAVRYDRNGDDHYDVISAFIKSMRGSDVDATLHYLARMI 291 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 G + + RI + + +G I A+ + + L Sbjct: 292 RAGEDPRFIA-------RRIMIA--AAEEVGMAAPQILQITVAAAQAVQMIGMPEARIIL 342 Query: 333 LIGRKELPYAP---------DRRMG-VEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTA 382 + AP ++ + V+ L+ + H R + Sbjct: 343 SEAAIAVATAPKSNASYTAINQALADVDAGLIGQVPLHIRNAPTTLMKSWGNHEGYHYAH 402 Query: 383 VMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPV 442 V Q P + +L R++ + + PA R Sbjct: 403 DYPNAVVEQQYMPDVLVGREYYHPNSRGYEREIGPRLDRIRAIIHGEPAPPAPTQTERKP 462 Query: 443 NNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481 Q + + A + Sbjct: 463 TEPVDPAHTEHPGETQRSQMKGKNDDATDTGRKEEDREP 501 >UniRef50_C9MR40 DNA polymerase III, gamma and tau subunit n=7 Tax=Prevotella RepID=C9MR40_9BACT Length = 421 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 81/397 (20%), Positives = 131/397 (32%), Gaps = 69/397 (17%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 +Q K R F+DV+GQE L + R+ HA LF G GVGK ++A A L Sbjct: 34 HQATKDKER-MNFSDVIGQEATKQRLLQMIKEDRVPHAMLFCGPEGVGKMALAMAFANYL 92 Query: 63 NCETGITATPCGVCDNCREIEQGR-FVDLIEI-------------DAASRTKVEDTRDLL 108 + T + N + + DL S ++ +L+ Sbjct: 93 LAGDEVDNTESPLISNAIAMLRKWEHPDLHFSFPTIKLPSMSGDHQPVSSDFAKEWHELI 152 Query: 109 ---------------------------------DNVQYAPARGRFKVYLIDEVHMLSRHS 135 + ++G +KV +I ++ S Sbjct: 153 MCGAYFTMNQWMKQMGATTQQAIITGAESDELSRVLSLKSSQGGYKVSIIWRPERMNLTS 212 Query: 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 195 N LLK LEEPP+ FL+ +P+KL TI+SR + +K +D I L H Sbjct: 213 ANKLLKLLEEPPQGTIFLMVCEEPEKLLETIISRTQRIDVKRIDDNAIEQALIH-----Q 267 Query: 196 IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEA 255 EP A + +A A GS AL D ++ L L+ Sbjct: 268 RGIEPDAAKRIAHIAHGSWLKALETLD----------TSNENREFLNM-----FQMLMRL 312 Query: 256 MVEANGERVMALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 N + + A G E +LV + + A L E + Sbjct: 313 CYLRNVKDLKRWSEVVAGYGREKERRMLVYFQQQVRENFIFNFRNAELNYMTLEEENFAK 372 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 AR I ++ + +++ + ++ Sbjct: 373 NFARFINEANVIEINELFERANRDIGQNANAKVVFYD 409 >UniRef50_Q6F9X3 DNA polymerase III, delta prime subunit n=17 Tax=Acinetobacter RepID=Q6F9X3_ACIAD Length = 331 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 122/346 (35%), Gaps = 39/346 (11%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 QE+V T L + H LF G +G GK + + + C CG C +C Sbjct: 14 WQENVWTTLTRRFPQ--VGHGLLFYGKKGCGKDAFTQHFLAWVLCTHKKPEGACGECVSC 71 Query: 80 REIEQGRFVDLIEIDAASR-------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 + ++ + + I K+E R+LL VQ ++V +I+ L+ Sbjct: 72 QWLKSDTHPNYVHITTDEDNKKQNAKIKIEKIRELLPFVQQT--VDGWRVIVIEPAEALN 129 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 S NALLKTLEEP E + +L KLP TI SR F L + Q L+ L+ Sbjct: 130 IASSNALLKTLEEPGERILIVLLADHYLKLPATIRSRLQHFSLDRVSTVQAHDYLQQHLD 189 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 QLL +A+ + + + + Sbjct: 190 ----NLPSEQAQLLLNLTNNMPLEAIEVAKSDWFAKR----------------EAFLMDW 229 Query: 253 VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 ++ + + N + + E + E L L + L L +L Sbjct: 230 IKLVHQKNMPL-------FYSSKWQKELVFSEWLTLF-EYLLCDLICVKLDQVCKNTDLD 281 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 +++LA + +Y L ++ + + ++ ++ + Sbjct: 282 LKDLASNYTLEVLFDFYADLQHAKQLIEQNVQSNLVMDQLFIKLMN 327 >UniRef50_A2SRY4 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRY4_METLZ Length = 332 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 120/339 (35%), Gaps = 21/339 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP +F +V+GQ + L+ +LG + H L G G GK+S + ++ E Sbjct: 3 WIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPH-LLVIGRSGCGKSSALEVFSRRFYTE 61 Query: 66 TGITATPCGVCDNCREIEQGRFV----DLIEIDAASRTKV-EDTRDLLDN-VQYAPARGR 119 + T V QG D V + + ++ P Sbjct: 62 SAAENT--TVLPVSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSAP 119 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 F++ + D L++ + AL + +E+ + +F+ T+ + I SRC+ + +D Sbjct: 120 FRLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPID 179 Query: 180 VEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +R L+H+L +E L +L + G LR AL + + Sbjct: 180 EATMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKALVWLELMALH-----DVSDL 234 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQ 296 S ++ T + + + V A + ++ G+ +L + R + Sbjct: 235 SELMTTETGELSAAAVLAAGRGDSAAAQQIVENLQIEYGMNAGDVLRSL----RRCLIGN 290 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 ++P A + + LL G Sbjct: 291 ITPDLALLFSKAEITLVEGQNEYLQMNAFTAELTELLSG 329 >UniRef50_C7PK32 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PK32_CHIPD Length = 379 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 120/400 (30%), Gaps = 69/400 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE + L R+ HA + G G + A+ L CE Sbjct: 1 MLFSNVIGQEDIQQQLIRSTENNRLGHANIILAPEGAGGLPLGLAFAQYLVCENKQPDGA 60 Query: 73 CGVCDNCREIEQGRFVDLIE---------------------------------------- 92 CG C C + + D+ Sbjct: 61 CGQCQACTKAGRYIHPDIHFSYPVIPRKPGDKPISSDYAAEWREFIDTHPYGNAYDWLQF 120 Query: 93 ---IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 + + +D++ + +K+ L+ L + N LLK +EEPP++ Sbjct: 121 IGAENKQGNITAMECQDIIRKLSLKSFESTYKILLMWMPEYL-GNEGNRLLKLIEEPPDN 179 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 FLL + +++ TILSR + L E + L N + A Sbjct: 180 TIFLLVAENQEQILATILSRTHLIKVNPLPKEVVVDALIKRAN-----IPAAKARQAATI 234 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A G+ R+AL + S +L + + + N + + Sbjct: 235 ASGNYREALYMLQH---------SDDDYHELL--------RNWLNYIFTGNRVALQGWVE 277 Query: 270 EAAARG---IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 A+ + L + LL ++ + +L + ++ Sbjct: 278 GIASAKMGRENQKQFLRYFINLLEHTLRLKYIDRSQLAFAEEETDFAFKLQKLADLHQME 337 Query: 327 LYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 Q L + + ++ ++ + P+P Sbjct: 338 QIMQELDNACYYIERNANAKLLFHALSIKLQYIFKKRPIP 377 >UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K0_FLAB3 Length = 442 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 112/309 (36%), Gaps = 48/309 (15%) Query: 2 SYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S LA + RP+T +V GQEH+ + L + ++ +F G G GKT+IA Sbjct: 20 SNTPLAEQMRPKTLDEVRGQEHLTGEKGTVRKMLENDTL-NSLIFWGPPGTGKTTIAE-- 76 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 I + +A + V+D R++++ + Sbjct: 77 -----------------------IISEQSGRKFFKLSAVSSGVKDVREVIEEAKKQNLFS 113 Query: 119 RF-KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + IDE+H ++ ++LL +E+ + ++ +LSR + LK+ Sbjct: 114 GKSPILFIDEIHRFNKSQQDSLLHAVEKGWIVLIGATTENPSFEVVSALLSRSQVYVLKS 173 Query: 178 LDVEQIRHQ----LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----GD 229 L E++ L++ + + + + G R ++ + + + Sbjct: 174 LSYEKLEELAELSLKNYNASHGTEFRIKDKEAFIQYSGGDARKLINSVENVLNNFKNSDK 233 Query: 230 GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 ++S V +L G D + +++M ++ + + G + + Sbjct: 234 KEISNADVLEVLQETMALYDKNGEQHYDIISAFIKSMRGSDPNGAVYWLARMLVGGEDVK 293 Query: 280 ALLVEMLGL 288 + ML L Sbjct: 294 FIARRMLIL 302 >UniRef50_Q2Y982 DNA polymerase III, delta prime subunit n=2 Tax=Nitrosomonadaceae RepID=Q2Y982_NITMU Length = 368 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 75/403 (18%), Positives = 136/403 (33%), Gaps = 85/403 (21%) Query: 16 ADVVG-QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPC 73 +++ G QE V L G + HA L G +G+GK + AR LAK CE + C Sbjct: 2 SNIYGWQEEVWRKL-----TGALGHALLLRGRKGLGKLAFARYLAKSRLCENRSVEGKAC 56 Query: 74 GVCDNCREIEQGRFVDLIEIDA-------------------------------------- 95 VC +C EQG D ++ Sbjct: 57 EVCASCHWFEQGNHPDFCLVEPEAATATSVSGEGAGEEGVETGDEAEVQSLPRAVNQLSG 116 Query: 96 --------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 + + + R+L D V + +K+ LI +S + +ALLK LEEPP Sbjct: 117 SGKSTKKPSRQISISQIRELGDFVNITSHQNGYKIILIHPAETMSTAAASALLKNLEEPP 176 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 F+L T Q L TI SRC Q + A D L+ + A + Sbjct: 177 LQTLFILITHQAQYLLPTIRSRCRQIIMPAPDAASAALWLKQQGVK--------APERCL 228 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 +A + AL ++ + ++ + +G V+A Sbjct: 229 ASAGYAPLTALEFANEDYLVRH--------------------SAFIQQISTPSGFDVLAR 268 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 E + + ++ + + + +++ + +++ LA + P + Sbjct: 269 AEEM--QKSDLVMVVSWLQKWCYDLMSFRMAQK--VRYHPDMLAQIKPLASGLDPYSMAT 324 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEV 370 Y + L ++ + + R+ +E L + + Sbjct: 325 YLRALDKTQQLARHPLNPRLFLEELLFSYVTMLSEKSRNRSKA 367 >UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriobacteriaceae RepID=C8WLQ0_EGGLE Length = 446 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 61/346 (17%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T +VVGQ+ + + L N + ++ LF G G GKTS+A ++A+ Sbjct: 18 PLAVRMRPRTLEEVVGQDEAVGPGSWLRNAIEQDQLSSVILF-GPAGTGKTSLAHVIAET 76 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + G + R EIDAA + A G Sbjct: 77 TKATFVEVSAIGGTVSDLRR----------EIDAADKR--------------LSAFGLRT 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H +R +ALL +E+ + ++ ++SR L L E Sbjct: 113 ILFVDEIHRFNRSQQDALLHAVEDRVLVLVGATTENPFFEVNSALISRSRVVELHGLSDE 172 Query: 182 QIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAI-------ASGD 229 +I +E L +E + +A + A G R AL+ + A + Sbjct: 173 EIVSLVERALADERGLGGRYRLDAKARDAIVLLAGGDGRAALTTLELAAGMVQPGTSKKP 232 Query: 230 GQVSTQAVSAMLG----------TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 +++ V A + D + +++M ++ + + + G + + Sbjct: 233 AKITEDNVRAATPHRSLPYDKNKDMHYDVISAFIKSMRGSDPDAALYWLARMIDGGEDPK 292 Query: 280 ALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 + M A+ A + + A I Sbjct: 293 FIARRM-----------FIAASEDIGNADPQALLIAEAAFKSAEVI 327 >UniRef50_B2ZY37 DNA polymerase III gamma/tau subunit-like protein n=1 Tax=Ralstonia phage RSL1 RepID=B2ZY37_9CAUD Length = 362 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 39/315 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ RK+RP T V+GQE ++T L LS G+I A F G GKT++ R +A Sbjct: 1 MTQVAFHRKYRPTTLDRVIGQEKIVTRLKGMLSSGKIPSAIAFFGPPSAGKTTLGRCVAH 60 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN T D E+DAA V+ RDL+ N ++ P R + Sbjct: 61 ALNELPVEKQT-----------------DYKEVDAADERGVDAVRDLIRNSRFRPQRNK- 102 Query: 121 KVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLATTDPQKL-----PVTILSRCLQF 173 ++ LIDE + ++ + ALLKTLEEP +++ + +P+K ILSRC QF Sbjct: 103 RIILIDEAQQIVSNQVAAQALLKTLEEPSPDTLWIICSMEPEKFGTTRTGKAILSRCTQF 162 Query: 174 HLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L+ + Q I E +++ E L+ L R +R +L + Sbjct: 163 VLQEPSESDLLKQAVRIAKGEGMSYAMDEERTVLKALVRGCNREMRTLANLMQALQQYYE 222 Query: 230 G------QVSTQAVSAM---LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 G ++ T+ ++ + + + DD+ A L+ + V + + + + Sbjct: 223 GLDKKPKKLGTEHLADLISSVESPDDELAADLMIGVYSKQYAAVQRALLDVSD-PYSFVK 281 Query: 281 LLVEMLGLLHRIAMV 295 + + +A+V Sbjct: 282 KCAWIAAFMLNVAVV 296 >UniRef50_A6SZH8 DNA polymerase III delta' subunit n=2 Tax=Oxalobacteraceae RepID=A6SZH8_JANMA Length = 344 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 65/357 (18%), Positives = 113/357 (31%), Gaps = 61/357 (17%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIE 92 R+ HA LF G G+GKT+ A A+ L CET CG C C Q D Sbjct: 20 RERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACGSCIACGWFTQYSHPDYRR 79 Query: 93 ID----------------------------AASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 + + K++ R L D + + R +V + Sbjct: 80 VRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRALGDFMNISTHRSGMRVVV 139 Query: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR 184 + +L+ + N+LLK LEEPP FLL + +L TILSRC +F L ++ Sbjct: 140 LYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGRDEAL 199 Query: 185 HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTL 244 L+ E G+ A Sbjct: 200 QWLKSQQVSE--------ADGWLAEQGGAPLAA--------------------FDASQAG 231 Query: 245 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGN 304 + + + + + + + + L+ + L+ + V+LS Sbjct: 232 MRETMDDFLRQLAQPGVDGALKAADRL--QKTPVPELVAWLQRWLYDVLSVKLSGT--IR 287 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + + LA+ + + + + R + ++ +E LL Sbjct: 288 YYPRYKKELGALAQRVETAALLQEIKAVNDRRAIAEHPLAPKLFIEDMLLEYSTIFS 344 >UniRef50_C2TQM1 DNA polymerase III subunit delta' n=7 Tax=Bacillus cereus group RepID=C2TQM1_BACCE Length = 339 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 123/345 (35%), Gaps = 27/345 (7%) Query: 14 TFADVVGQEHVL-TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 ++ +V+ ++H++ T L NGL +++HAYLF+G G K A L K L C P Sbjct: 9 SWNEVMQKQHIVGTILKNGLVNNKVNHAYLFNGEAGTLKKETALLFIKSLFCLENTERIP 68 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM 130 C C NC I D++ I K E + L + Y K+YLID V M Sbjct: 69 CNDCRNCNRINNNIHPDVVIISPEEGGSIKKEQIQQLHKEISYTSTELSRKIYLIDRVEM 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 L+ + N+LLK LEEP + +L T + QK+ TI SRC + + + +L Sbjct: 129 LTTSAANSLLKFLEEPDGNTTAILVTENIQKVLGTIQSRCQILNFLDTPLGEYEEELSAA 188 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + I L ++ A+SL + ++ + + Sbjct: 189 NLSQDIV-------KLLTRMTNNIDKAMSLARDQWFIDLHSQVACLMKNLMEPAVYIEII 241 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 L++ + E ++ + L+ + Sbjct: 242 KLLKLIDSKEKEPILFKFINI----------------WFKDVL-YALTKKKGFISFQSQI 284 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + A + I + L G + ++ ++ Sbjct: 285 NILELHAEKLGVKGIADAIELLEKGYIRRQANVSLNLVLQEMFIK 329 >UniRef50_A1STW9 DNA polymerase III, delta prime subunit n=2 Tax=Psychromonas RepID=A1STW9_PSYIN Length = 342 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V L N GR HA LF+G G+GK + + LAK L C A CG C +C+ E Sbjct: 18 VFKQLINTFQAGRFAHALLFTGCAGIGKFELGKHLAKYLLCSNKQ-AASCGHCHSCQLFE 76 Query: 84 QGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 +D + + +E R+L+ + P G KV +I ++L+ + NALLK Sbjct: 77 AQNHLDFHLLQNETNKSIGIEQVRNLIAKLNERPHLGDNKVVIIKNANLLTTAAANALLK 136 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP + +L T +L T+LSR HL + ++ L + + Sbjct: 137 TLEEPQGNSYLILLTRSHHQLMPTLLSRVQHTHLHTPEDTELFAWL----ALQGFNIQDI 192 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMVEAN 260 L R + S LS A + V + + + ++ A Sbjct: 193 GL---LRLYQNSPFALLSHLQSVRAETGDDERRECVEGLFYLLSHPETLFTF--SVFLAE 247 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 L+ + L + G +++ I Sbjct: 248 QAEQRLLLLFYLLHDLHKLKLAECIAG--------NEIQLESDAVYGFAYPQLQIWKNRI 299 Query: 321 PPTDIQLYYQTLLIGRKEL 339 ++ LL R L Sbjct: 300 SLKSLRFLCDELLQTRNLL 318 >UniRef50_Q7UK75 DNA polymerase III, tau/gamma subunit n=1 Tax=Rhodopirellula baltica RepID=Q7UK75_RHOBA Length = 376 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 76/345 (22%), Positives = 125/345 (36%), Gaps = 38/345 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT- 71 +++ D++G + ++T L + GR+ + LF G GVGKTS A LL + L CE Sbjct: 28 KSWNDLIGHDALITGLTAAIRQGRLGGSLLFVGPNGVGKTSAAILLTQTLLCERSTARDM 87 Query: 72 -PCGVCDNCREIEQGRFVDLIEIDAASR---------TKVEDTR---DLLDNVQYAPARG 118 PCG C +C ++ G D I++ D R +V P + Sbjct: 88 APCGECPSCVQVRVGTHPDFIQVRKPDDKTLIPLELLIGPVDARLQEGFCHDVHLRPMQA 147 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + KV ++ + L+ N LLKTLEEPP + +L + Q+ TI SRC + Sbjct: 148 QRKVAILHDADFLNEEGANCLLKTLEEPPANALIILIGSSEQRQLPTIRSRCQVLRFQTP 207 Query: 179 DVEQIRHQLEHILNEEHIAHEPR--------ALQLLARAAEGSLRDALSLTDQAIASGDG 230 E R L L+ HE AL + G + A L G Sbjct: 208 PGEAGRALLRKQLDHYQSQHEEESLPTMSDDALDAAIELSAGDMHVAARLAR----GGGE 263 Query: 231 QVSTQAVSAMLG-TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 Q+ + + D + L+ + + + + + A + ++ + Sbjct: 264 QIREALWNQLAAPVPDPTAIVRLIN----GHLDSISKDVPKRRAALRDVFSIA---VQHY 316 Query: 290 HRIAMVQLSPAALGNDMAAIELR----MRELARTIPPTDIQLYYQ 330 R S R RE+ R+ + Y Sbjct: 317 RRQLRSDASSGEYDPATHRRLDRTLRTFREIDRSANLGTLVDCYA 361 >UniRef50_B5FG33 DNA polymerase III, delta' subunit n=3 Tax=Aliivibrio RepID=B5FG33_VIBFM Length = 327 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 124/331 (37%), Gaps = 38/331 (11%) Query: 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 R+ HA L + G G+ ++ + A L C T PCG C +C I+ DL I Sbjct: 22 NDRLPHAILCAMPIGAGREALVQYFADTLLCLT-QGIEPCGFCHSCELIKSQTHPDLHWI 80 Query: 94 DAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 VE R + +V +ID ++ + NALLKTLE PP++ Sbjct: 81 KPETEGKSISVEQIRQCNSWALESSQFNAKRVIIIDPAEKMTESAANALLKTLEAPPKNC 140 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 +F+L P +L TI SRC +H +D E I L+ E+++ +++ Sbjct: 141 QFVLLADSPHQLLPTIRSRCQVWHQSKIDAESITIWLK---ETENLSVSMQSIA------ 191 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 L D+L L ++ Q L E+ V+++ + ++ Sbjct: 192 ---LNDSLPLAVKSFYQDKKQ-----------ALHKQLLSDF-ESCVKSDFCQTADIVKT 236 Query: 271 AAARGIEWEALLVEMLGLL--HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 E L +L + ++ ++Q + LA+T+ + Sbjct: 237 VLKLESEGLTWLSYLLADIQKRQMGIMQPW------VHCDEIKLIESLAKTLSSNVVYKQ 290 Query: 329 YQTLLIGRKELPY--APDRRMGVEMTLLRAL 357 Y L +++L ++ + + + Sbjct: 291 YIALNSLQEQLDSFPGLNKELLLTQWMFEFT 321 >UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4P896_USTMA Length = 566 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 76/555 (13%), Positives = 167/555 (30%), Gaps = 56/555 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLT-ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + A + RPQT + VGQ V+ L L G+I + + G G GKT++ARLLAK Sbjct: 26 KPFAERMRPQTLDEYVGQSDVVNGPLKMLLRQGKIP-SMILWGPPGTGKTTLARLLAKS- 83 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGRFK 121 CR+ G +A+ + D + +LD + Sbjct: 84 ---------ASSTDSTCRQ---GPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRT 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + IDE+ +R + LL +E+ + +L ++SR F L L V+ Sbjct: 132 LLFIDEIQRFNRAQQDVLLPAVEKGQIVLVAATTENPSFRLQSALISRMRVFVLTKLSVD 191 Query: 182 QIRHQLEHILN------------EEHI---AHEPRALQLLARAAEGSLRDALSLTDQAIA 226 + L + L E + + ++ +A A+G R AL + A++ Sbjct: 192 ECCQVLRNALASVKRESDQADQHAECVAAAYIDEHLIRWIANMADGDARTALGALELALS 251 Query: 227 SGDGQV-STQAV-------------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 + D V S + V G + D +L +++ ++ + + + Sbjct: 252 TTDASVCSAENVSRLKTALKRTALQYDRTGDMHYDTISALHKSIRGSDADAALYWLARMV 311 Query: 273 ARGIEWEALLVEM-------LGLLHRIAMVQLSPAALGND-MAAIELRMRELARTIPPT- 323 G + + + + L + M + A + + + + + Sbjct: 312 CSGDDALFIARRLIVAASEDIDTLAALQMATATYQACQVVGLPECGNNLAQCVVFLAESP 371 Query: 324 DIQLYYQTLLIGRKELPYAPD--RRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPT 381 Y+ + + + + + + + E Sbjct: 372 KSTRSYRAWNKAKALVEGGYNHPVPLHIRNAPTKLMNEIGYGKEYRYEPRFAHPVYQEFF 431 Query: 382 AVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARP 441 P A A T + A+ + + A + + Sbjct: 432 PPQLKGTRLLSPTPAEAPARTEADHQHGRTDKPAQTETEAEAEAEQVPAQAQMRVSDRND 491 Query: 442 VNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKAL 501 ++ +++R + + + + + + + + + L Sbjct: 492 YHHTSMQRAMASRAGIGPGSCQRIFDLGARSVDLDLLDEWQRERNGGKEWSGRQNMLELL 551 Query: 502 EHEKTPELAAKLAAE 516 + + Sbjct: 552 QRLGQMQSEQPGHTA 566 >UniRef50_D2R1Q1 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1Q1_9PLAN Length = 369 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 72/357 (20%), Positives = 121/357 (33%), Gaps = 43/357 (12%) Query: 12 PQ-TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 PQ ++ VVG V++ L+ GR+ +L G G+GK + A LAK L C+ Sbjct: 5 PQGSWHGVVGHLDVVSRFEAMLAGGRMASTFLLVGPSGIGKRTFAIQLAKALLCKHSPDG 64 Query: 71 --TPCGVCDNCREIEQGRFVDLIEID-AASRTKV----------EDTRD-LLDNVQYAPA 116 CG C +C +++ DL I A + + R L ++ P Sbjct: 65 RLKACGRCPDCLQVDSLSHTDLQVISKPADKAFIPLELLIGDKEHRMRAGLCYDLSLRPR 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G K+ +ID+ L++ NALLKTLEEPP +L T Q+ TI SRC + Sbjct: 125 DGGRKIAIIDDADYLNKEGANALLKTLEEPPPRSVLMLLGTSEQRQLPTIRSRCQIIRMS 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L I L + P +A + GS++ A+ L + + + + Sbjct: 185 RLHETSIADLLVR----HQLCDSPELAAKIAGLSAGSMQQAILLLGEGVLEFRRDLLAKL 240 Query: 237 V---SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 LG VEA + + + + +L L Sbjct: 241 STLPLETLGVA--KMVSQFVEAAGKESPAK-----------RARMKQVLEMAQQLYRGFL 287 Query: 294 MVQLSPAALGNDMAAIELRMRELARTI------PPTDIQLYYQTLLIGRKELPYAPD 344 + + + + + P + + + Sbjct: 288 YAATTGTEPAI--EERDHELTSAVQKLYRTLGPQPELAADLVDLAIDAETHIDGNVN 342 >UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacteria RepID=C8R0G7_9DELT Length = 461 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 62/320 (19%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP D VGQ H+L LA G + + L G G GKT++AR+LA Sbjct: 21 PLAERMRPARLDDFVGQRHLLADDKLLAGLSRHGYLP-SLLLWGPPGSGKTTLARILA-- 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGRF 120 G +A + V++ R++++ + GR Sbjct: 78 -----------------------GGSGADFVFFSAVLSGVKEIREIVERSRRIRAESGRG 114 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ +A L +E + + +LSRC L L Sbjct: 115 SVLFVDEIHRFNKSQQDAFLPHVEAGLITLIGATTENPSFHVIAPLLSRCRVIVLNPLAA 174 Query: 181 EQIRHQLEHILNEE-------HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 E ++ LE L++E + A L A+G R L+ + A A Sbjct: 175 EDLQIILERALSDEERGLGKLRLKISREAADHLISIADGDARSLLNSLEIAAALAQDQAR 234 Query: 231 ------------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALI 268 Q+ V + G + +L +++ +++ + + + Sbjct: 235 GQTASQEIGGEVQIGLTTVEEAIQRHSLRYDADGEEHYNLISALHKSLRDSDPDGALYWL 294 Query: 269 NEAAARGIEWEALLVEMLGL 288 A G E + ++ Sbjct: 295 GRMLAAGEEPLYIARRLIRF 314 >UniRef50_Q5UQ47 Putative replication factor C small subunit R395 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS1_MIMIV Length = 319 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 123/335 (36%), Gaps = 26/335 (7%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + K+RP DV+ +++ + N R + + +G+ GVGKTS R +AK Sbjct: 3 NSIPWIEKYRPVNIDDVIIDDNISKQI-NIFLQDRENVHLIITGSPGVGKTSTVRCIAKE 61 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF- 120 L E +EI+AA V ++ Sbjct: 62 LLGED-------------------MSQGYLEINAAEDRGVRSISTIIPPFCKKVFAANKS 102 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ L+DE +++ + +++ KF+ D K+ I S C K L Sbjct: 103 KIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTD 162 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 EQI L I E I ++ + L+ + + G +R +++ + A +++ V + Sbjct: 163 EQINQYLSKICVNEKIPYDEQGLRTICYISNGDMRKSINDLQK-TAFTFEKITKNLVLKI 221 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 D + ++ +E+N E+ ++N +++ + ++ + + +S Sbjct: 222 CKVPDPEDIRKIISLCLESNLEKADEIMNNII--KLDYCYF-DIVTSFIYVLKVYDMSEN 278 Query: 301 ALGNDMAAIELRMRELARTI-PPTDIQLYYQTLLI 334 + + +++ + + L+ Sbjct: 279 LRLRLIMIVNETKINISKGLRSKLQLTGMICRLIK 313 >UniRef50_Q8TZC4 Mkn RFC intein n=1 Tax=Methanopyrus kandleri RepID=RFCS_METKA Length = 635 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 6/242 (2%) Query: 96 ASRTKVEDTR-DLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 + ++ R + + + P G RFK+ +DE L+R S AL + +E + +F+ Sbjct: 388 SDERGIDVIRTKVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFI 447 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 LA + I SRC+ F L I+ +L I E + AL + +EG Sbjct: 448 LAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEGD 507 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA- 272 +R A+++ QA A+ ++ V + T ++ ++ + ER L++E Sbjct: 508 MRRAINVL-QAAAALGREIDEDTVFQIAATARPEEVREMIHHAWNGDFERARELLHELLT 566 Query: 273 ARGIEWEALLVEMLGLLHRI-AMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQ 330 G+ E ++ ++ + + + + + L N + E R+ + I + Sbjct: 567 RYGMSGEDVVRQVHREIFDMDEIPEEAIPELVNAVGDFEYRLIRGSDERIQLEALLARIH 626 Query: 331 TL 332 L Sbjct: 627 AL 628 Score = 89.3 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K+RP+ D+V QEHV+ L ++ G + + LF+G G GKT+ A LA+ L Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPN-LLFAGPPGTGKTTAALCLARELF 69 Query: 64 CETGITA 70 E Sbjct: 70 GEHWRDN 76 >UniRef50_A8PMJ4 DNA polymerase III subunit delta' n=1 Tax=Rickettsiella grylli RepID=A8PMJ4_9COXI Length = 324 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 121/343 (35%), Gaps = 37/343 (10%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + L GR+ HA LF+G G+GK+ A AK L C+ + C C Sbjct: 8 LPWHTQQWQQLYRSHQEGRLSHALLFAGQMGLGKSLFALHFAKTLLCKQPKQSRACQACR 67 Query: 78 NCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 +C + G DL + K++ RD+ D + + + +K+ +I+ L Sbjct: 68 DCILVAAGTHPDLSLLTTEKSTQGIKIDQIRDITDKLNHTS-QATYKIIVINPADSLLVA 126 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + ALLK+LEEP F+L T + L TI SRC L L Sbjct: 127 ASQALLKSLEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFNPPKKSLAMAWLAQQL--- 183 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 AL L + G+ A+ ++ LV Sbjct: 184 ----PASALDTLYHLSSGAPLLAVRYAEEGYPL--------------------FYADLVH 219 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 ++ + + + + A + + LL +L + +L L A + Sbjct: 220 SLAQLVNQTLNPIRCAAKYLKTDIQQLLSALLN-----LLNELLKCQLLRGYTATIDSIA 274 Query: 315 ELARTIPPTDIQLYYQTLLIGRKEL-PYAPDRRMGVEMTLLRA 356 LAR + + YY ++I R + + + ++ L R Sbjct: 275 HLARVLSTDFLLQYYDRIMILRARMVNVTLNVSLVLDDLLSRW 317 >UniRef50_D2RHQ8 AAA ATPase central domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RHQ8_ARCPR Length = 499 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 124/337 (36%), Gaps = 52/337 (15%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGR--IHH-AYLFSGTRGVGKTSIARLLAKGL 62 K+RP+T DVV + +L + + I L G GVGKTS+A LA Sbjct: 3 WVEKYRPKTLKDVVADKDILERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALANTF 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-------- 114 E ++A+ + + R ++ ++ Sbjct: 63 GWEVVE------------------------LNASDQRSWQIIRRIVGEAAFSETISSEGE 98 Query: 115 ---PARGRFKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 GR K+ L+DEV +S+ +AL+K L+ P +L DP KL + Sbjct: 99 FLSSESGRLKLILLDEVDNISKKEDFGGESALIKLLKRKPRQPI-ILTANDPYKLSKELR 157 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 C K L +QI LE I E I + AL+L+A+ A G LR A++ QAIA Sbjct: 158 DLCEFVQFKRLRTDQIVKVLERICASEGIKADRNALRLIAQNAGGDLRAAINDL-QAIAE 216 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G ++ + V + + + +++ + + V + + E L Sbjct: 217 GRREIRAEDVV-VSKRMQETDVFKVMQKIFKRFDRTVYTDAMSLDESPEDLIVWIDENLP 275 Query: 287 ------GLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 LL ++ + LG R+ A Sbjct: 276 LEYEGDELLRAYLVLSRADMFLGRVRRRGFYRLWRYA 312 >UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPI4_BDEBA Length = 449 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/352 (13%), Positives = 113/352 (32%), Gaps = 50/352 (14%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 L+ RP+T D+ GQ+ L + L L G + + + G G GKT+ A L++ Sbjct: 27 PLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLP-SLIIWGPPGTGKTTFALALSQH 85 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 N + ++A + R++ + + + + K Sbjct: 86 FN------------------------AHYVHLNAVDS-GAKALREVGEAGKDRRLQYQQK 120 Query: 122 -VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE+H ++ + LL +E+ + +L +LSRC + L Sbjct: 121 TILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSYELNRALLSRCRVVIFERLSE 180 Query: 181 EQIRHQLEHI----LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV---- 232 + + ++ A + L ++G R ++ + +V Sbjct: 181 DDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL 240 Query: 233 -STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 + +L + D + ++++ ++ + M + G + + Sbjct: 241 LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFI 300 Query: 282 LVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ L I ++ + I + + Y + Sbjct: 301 ARRLIILASEDIGNADPRAISVAIAGLQAVEAIGLPEGAITLSQVTTYLASC 352 >UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacteria RepID=D2AWQ0_STRRD Length = 436 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 46/342 (13%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 ++ LA + RP+ +V+GQ H+L T L + + G G GKT++A ++A Sbjct: 16 HEPLAVRMRPRGLDEVIGQRHLLGPGTPLRRLVEAE-APMSLFLWGPPGTGKTTLAYVVA 74 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARG 118 G +A V++ R ++ + G Sbjct: 75 -------------------------GVTKRRFVEVSAVSAGVKEVRAAIEQARRELGMSG 109 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R V +DEVH ++ +ALL +E + +LSR L L++L Sbjct: 110 RQTVLFVDEVHRFNKAQQDALLPAVENRWVTFIGATTENPFFSVISPLLSRSLLLTLESL 169 Query: 179 DVEQIRHQLEH-ILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + IR LE + + + P A + L R A G R +L+ + A DG+++ Sbjct: 170 SEDDIRMVLERAVADPRGLDGKAKLAPEAAEHLVRLAGGDARRSLTYLEAASLIADGEIT 229 Query: 234 TQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + V + G D +++M ++ + + + G + + Sbjct: 230 VEVVERAVDKAAVRYDRQGDQHYDVISGFIKSMRGSDADAALHYLARMVEAGEDPRFIAR 289 Query: 284 EMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 ++ + M + + A + + Sbjct: 290 RIVIFASEDVGMADPTCLQVAVAAAQAVEFIGLPEGRLNLAQ 331 >UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN Length = 665 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 79/341 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP T D GQ + L + L I + + G G GKT++A ++A Sbjct: 225 KPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIP-SLILWGPPGCGKTTLAHIIAS 283 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 + +A+ K D RD++ Q R Sbjct: 284 ----------------------NSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKR 321 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + IDE+H ++ + L +E + ++ +LSRC L+ L Sbjct: 322 KTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLP 381 Query: 180 VEQIRHQLEHILNEEHIA------------------------HEPRALQLLARAAEGSLR 215 VE + L +N I E +A+ LA ++G R Sbjct: 382 VEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDAR 441 Query: 216 DALSLTDQAIAS------------------GDGQVSTQAVSAML----------GTLDDD 247 L+ A+ + ++ V L G + Sbjct: 442 AGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYN 501 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +L ++M ++ + + G + + ++ Sbjct: 502 CISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRF 542 >UniRef50_C7NFU2 DNA polymerase III, gamma/tau subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFU2_KYTSD Length = 394 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 74/378 (19%), Positives = 137/378 (36%), Gaps = 50/378 (13%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 ++ +VGQE + LA ++ R+ HAYLF+G G G+++ AR A L C G C Sbjct: 6 WSALVGQEELAEGLAQAVADPRRLTHAYLFTGPPGSGRSTAARAFAAALLCPDGG----C 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C CR G D+ ++ V + RDL + P+ G +++ +I++ L+ Sbjct: 62 GSCRECRSALDGTHADVEVVNTEGLSISVRNARDLAMAAAHHPSVGAWRIIVIEDADRLT 121 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI-- 190 + +ALLK LEEP ++L PQ + VTI SR L+ V+ + LE Sbjct: 122 EQAADALLKALEEPSPRTIWMLCAPSPQDVIVTIRSRSRHLSLRTPPVQAVAELLESQGV 181 Query: 191 ----------LNEEHIAHEP--------------------------RALQLLARAAEGSL 214 + HI AL+ A E + Sbjct: 182 DAAMAAYAARAAQSHIGVAKWLARDEAARARRHRVTRIPAELTGLGSALRQAATLHEVAT 241 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 +A + +Q + ++ + S + + + R + + Sbjct: 242 SEAKAEAEQKDVAEREELLRLNGADPAARTQPPAIRSQLNQLAKEQKARATRRVRDVID- 300 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 LV++ + ++ + + + +LART ++ + + Sbjct: 301 -----RTLVDLASVYRDALLLAVGAGQIELVNPQNVAELEQLARTTSADNLLCCLEEIDR 355 Query: 335 GRKELPYAPDRRMGVEMT 352 R + + +E Sbjct: 356 ARTRIAENVMPLLALEAM 373 >UniRef50_D2UXA6 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UXA6_NAEGR Length = 356 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 119/380 (31%), Gaps = 46/380 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K RP + + + V L N G H L G G GK + + L + + Sbjct: 4 WLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPH-LLIHGPSGAGKKTRIQALLREIYNN 62 Query: 66 TGITATPCGVCDN-------CREIEQGRFVDLIEIDAASRTKVE--DTRDLLDNVQY--- 113 + + +EI + + +++ V Sbjct: 63 KIDKVKLENKDVSVGSDGSKTITVTALSSGYHLEITPSDSGYYDKYVVANMIKEVAETDS 122 Query: 114 -------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 + A KV ++ EV L+R + AL + +E+ + + +L K+ I Sbjct: 123 VDFLSTGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIPPI 182 Query: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 SRC+ + A E+I L+ + +E+I P Q + +G++R AL + + A Sbjct: 183 RSRCMAVRIPAPSDEEISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLESAKV 242 Query: 227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + + G + + ++++ + + I + ++ LL + Sbjct: 243 -EQYPFTKDQQVKLPG--WEKFVEEIAKSIIADQTPQTLLKIRD------DFFLLLTNCI 293 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 I L L ++ ELA + Sbjct: 294 A--PDIIFKTLLLKLLDLLDGEQAHQVIELAAKF---------------EHRMKCGSKPI 336 Query: 347 MGVEMTLLRALAFHPRMPLP 366 +E + ++ M Sbjct: 337 FHLEAFVASVMSLCQSMFSF 356 >UniRef50_UPI00015B415D PREDICTED: similar to werner helicase interacting protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B415D Length = 522 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 112/325 (34%), Gaps = 61/325 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA K RP + VGQ+HVL T L LS I + + G G GKTS+A ++A Sbjct: 109 IPLAEKMRPNSIMSYVGQKHVLGPETMLYQLLSKTEIPN-IILWGPPGCGKTSLANVIA- 166 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 C +C G +++ AA + D +D + GR Sbjct: 167 -------------NTCQHC----PGGKYRYVKLSAAMS-GISDVKDAITIASNELKFGRR 208 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H ++ + L +E + L +LSRC L+ L + Sbjct: 209 TVMFMDEIHRFNKTQQDTFLPHIESGTIILIGATTENPSFSLNAALLSRCRVIVLEKLTI 268 Query: 181 EQIRHQLEHILNEEH-----------------IAHEPRALQLLARAAEGSLRDALSLTDQ 223 E + L + + ++ LA ++G R AL + Sbjct: 269 ENLTEILIRAIKAAGGAVHDFEKPPNASINNKFFIDRETVKWLAETSDGDARIALGGLEL 328 Query: 224 AI-----------ASGDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGE 262 AI +SG +S V L G D +L +++ ++ Sbjct: 329 AIHSKVPSSEGSSSSGLNFISLDDVKDSLKKTHMLYDKKGDQHYDMISALHKSVRASDDN 388 Query: 263 RVMALINEAAARGIEWEALLVEMLG 287 + I A G + + ++ Sbjct: 389 AALYWITRMMAGGEDPVYIGRRLVR 413 >UniRef50_O67486 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67486_AQUAE Length = 305 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 104/302 (34%), Gaps = 60/302 (19%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE---- 83 L I LF G G GKT A AKG+ C+ + CG C +C+ + Sbjct: 6 LEKLQKTLHIPGGLLFYGKEGSGKTKTAFEFAKGILCKENVPWG-CGSCPSCKHVNELEE 64 Query: 84 -------------------------QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPAR 117 G D + I + K+E R++ + PA Sbjct: 65 AFFKGEIEDFKVYKDKDGKKHFVYLMGEHPDFVVIIPSGHYIKIEQIREVKNFAYVKPAL 124 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 R KV +ID+ H ++ + NALLK LEEPP F+L T + TILSR Q K Sbjct: 125 SRRKVIIIDDAHAMTSQAANALLKVLEEPPADTTFILTTNRRSAILPTILSRTFQVEFKG 184 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 V+++ + + +A+ + GSL+ A+ + + V Sbjct: 185 FSVKEVMEIAK---------VDEE----IAKLSGGSLKRAI-------LLKENKDILNKV 224 Query: 238 SAMLGTLDDDQALSLVEAMVEANGE------RVMALI--NEAAARGIEWEALLVEMLGLL 289 L L + E +M + + + L++ + L Sbjct: 225 KEFLENEPLK-VYKLASEFEKWEPEKQKLFLEIMEELVSQKLTEEKKDNYTYLLDTIRLF 283 Query: 290 HR 291 Sbjct: 284 KD 285 >UniRef50_B4RK44 DNA polymerase III subunit delta n=28 Tax=Neisseriaceae RepID=B4RK44_NEIG2 Length = 325 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 128/355 (36%), Gaps = 46/355 (12%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDN 78 + +A + +A+LF G +G GKT+ AR AK L CET PCG C + Sbjct: 5 WHQEQWRQIAEHWTSR--PNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMS 62 Query: 79 CREIEQGRFVDLIEIDA-ASR---------TKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 C +G D EI A K++ R+++DNV RG +V LI Sbjct: 63 CHLFGRGSHPDFYEITPLADEPENGRKLLRIKIDAVREIIDNVYLTSVRGGLRVILIHPA 122 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 ++ + N+LLK LEEPP V FLL + K+ TI SRC + L A + L Sbjct: 123 ESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKKVLPAPSHGEALAYLR 182 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 E P + LA + + +G++ + Sbjct: 183 DRGVAE-----PE--ERLAFHSG-----------APLFQEEGEL-------------REL 211 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 L+E + E +++ + + M L + + + A Sbjct: 212 RAKLLEILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPV--YYPA 269 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 E R+ + A P ++ L + + +M +E L+ L Sbjct: 270 YEDRLLQTASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKEN 324 >UniRef50_Q2BG76 DNA polymerase III subunit delta n=1 Tax=Neptuniibacter caesariensis RepID=Q2BG76_9GAMM Length = 295 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 112/300 (37%), Gaps = 28/300 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 LA R+ HA L G +G+GK A+ A+ L C+ + CGVC +C G Sbjct: 16 KHLAELHRQKRLPHALLIHGMQGIGKALFAKSFAQMLLCQQPESGKACGVCKSCELNAAG 75 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 DL + + KV+ R L + + +G ++V +ID ++ S NALLK Sbjct: 76 SHPDLFILQPEEAGKQLKVDQVRALGEFIYSTAQQGGYRVVVIDPADSMNIASANALLKM 135 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP LL T+ ++ TI SRC D E L E + Sbjct: 136 LEEPGSDTLLLLVTSKMGQVLPTIKSRCQHIECVTPDTEVAISWLMS----EG-DLDEER 190 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + + G+ ++AL+ + LG L + + + Sbjct: 191 ARGVLTINRGAPKEALAYLNN----------------NLGEDRAQLIRGLADILKQRRSP 234 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + + A + ++ E LL + LL IA L + +A+ + P Sbjct: 235 --LEVAQ--AWQKLDLELLLGWLYSLLTDIARGALCENDDSVRHEDARNMLNAVAKKLTP 290 >UniRef50_B2V7X1 DNA polymerase III delta' subunit n=5 Tax=Hydrogenothermaceae RepID=B2V7X1_SULSY Length = 312 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 122/316 (38%), Gaps = 30/316 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G E T + L + L+ G +GK +A A+G CE CGVC+ Sbjct: 3 VIGHEKEKTLIKKYLHKNYDSLSLLYEGKDCIGKKLLALYTARGFLCEKKE-GFGCGVCN 61 Query: 78 NCREIEQGRF----------VDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLI 125 +C+ + I + + K++ R+ + + ++G KV +I Sbjct: 62 DCKLVNNLISNVYENTNLTPHPNIMLIQSDNREIKIDQIREAISFLSLKSSKG--KVLII 119 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 ++ L+ S NALLKTLEEPP + +L T++ +L TI+SR + + L + + Sbjct: 120 EKAENLNTESANALLKTLEEPPSNTLIILTTSNQNQLLPTIVSRLKKIRFRKLSHQDVVD 179 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L L++E ++ LA ++GSL A +L + + V ++ Sbjct: 180 ILSLKLSDEKK------IKELADISDGSLCIASTLLKKEEIYVWAK---DFVGILINKKH 230 Query: 246 DDQALSLVEAMVEANGERVMALINEA----AARGIEWEAL--LVEMLGLLHRIAMVQLSP 299 + S+ + + + E V + + + + + L Sbjct: 231 PEGIFSIAAKIDKMDIEDVNLFFDIIFKFYIKHSKDLKDIDSYQKFLNQYRLAITSLRKG 290 Query: 300 AALGNDMAAIELRMRE 315 + + R+ + Sbjct: 291 VKKKLIIESFYFRLTQ 306 >UniRef50_A1UT07 DNA polymerase III, delta' subunit n=5 Tax=Bartonella RepID=A1UT07_BARBK Length = 347 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 144/337 (42%), Gaps = 26/337 (7%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVC 76 ++G E V LA R+HHA LF G RG+GK ++A A + P Sbjct: 25 IIGHEEVRHFLAQLRKEKRLHHALLFEGERGIGKATLAFHFAWNILSNQENGFLQPEYDS 84 Query: 77 DNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 R+I QG +L+ + + ++D R+++ ++ G ++V +ID Sbjct: 85 VIWRQIAQGSHPNLVYVARRFDSKTKKFKTGISIDDIRNMMYFLKQTSRNGEWRVVIIDP 144 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 ++R++ NA+LKTLEEPPE F++ T +KL TI SRC Q L++L ++++ + Sbjct: 145 ADDMNRNAANAILKTLEEPPEKTLFIIITHSSRKLLSTIRSRCQQVLLRSLHDDEMKQVI 204 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV--STQAVSAMLGTLD 245 HI+ ++ ++ + ++++ + +EG R A I+ G ++ + + T + Sbjct: 205 SHIIPKQALS-DEETVKMIIQKSEGRPRKAA----LLISYGGFEIAKTLDNLFKQ-STCN 258 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 +L +A+ + + + I+ +A+L G +A+ + N Sbjct: 259 LAIVHNLAQALSSFDLDIQFQQFCDEILDRIQKKAILFAEQGA---LALSKKYAQIWQNI 315 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 I + Q L K + Sbjct: 316 HQEILEM-----QLFNLDKKQFIINLLFKIHKIIQQT 347 >UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU Length = 294 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 118/289 (40%), Gaps = 30/289 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 ++RPQ +VVGQE ++T N + H +F G GVGKT++A +A Sbjct: 3 WTEEFRPQNLDEVVGQERIVTFFRNLGKSDISKWPHV-IFYGPPGVGKTTMAHAIANE-- 59 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKV 122 +++I+++A+ K++D + V+ P +G K+ Sbjct: 60 ----------------------YDIEIIDMNASQYRKIDDMENQIFSIVKQIPEKGARKI 97 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +DE L+ +S L + +E+ F+ A K+ + RC +F+ LD E Sbjct: 98 LFMDEADALTPNSQWLLRRMMEDYSNVTLFMFACNYDAKIIPALYDRCAEFYFNGLDSES 157 Query: 183 IRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 ++ +I E L L +++GS R +L Q + G ++ +S L Sbjct: 158 LKKVAINICQSEGRDVPSEDTLNKLIESSDGSARSFTNLLFQYLVGGTMPETSFKISEYL 217 Query: 242 GTLDDDQALSLVEAMVEANGERVMA-LINEAAARGIEWEALLVEMLGLL 289 + + + + + + ++ ++ G ++E ++++ Sbjct: 218 KAIKLNDLENAKKIVAKTTYHELLKQVLTVLLKYGEKYEDAIIKLGDYF 266 >UniRef50_C5BU66 DNA polymerase III subunit delta prime n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU66_TERTT Length = 339 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 34/344 (9%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 Q A ++ G + HA L G G+G S+AR +A+ L C + + CG C C Sbjct: 10 WQNTYWHQFAGQVTQGHLPHAILLQGVAGIGTESLARAMAEFLMCSSPVEQAACGQCKVC 69 Query: 80 REIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 R ++ DL + + KV+ R L + V +G K+ +I+ ++ + Sbjct: 70 RLLQSHNHPDLFLLSPEEKSVVIKVDQVRQLTEFVAKTSQQGGRKLVIIEPAEAMNIAAA 129 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 NALLK EEP F+L +L TI SRC L + LE Sbjct: 130 NALLKCFEEPSGDTVFILVCHHANRLLPTIRSRCACHTLPVPERALAVSWLET------- 182 Query: 197 AHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 + LL G+ A + + + + V+A+ Sbjct: 183 -MGVESAALLLDETHGAPLTAHQWSRDDVIASQDKACELLVAAL---------------- 225 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 ++ + + A L ++ L ++ + + + + Sbjct: 226 ---QTQKPVTTVAGTLAGECSGLELAELLINWLEQLIRERTRGSRRSLLAHWEP--LVGV 280 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAP--DRRMGVEMTLLRALA 358 A+ + ++ + + +L P + M +E LL Sbjct: 281 AQALSTVELFKLREVYCQRKAQLLANPNLNANMVIEDLLLEWQR 324 >UniRef50_C4FBK8 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FBK8_9ACTN Length = 381 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 146/373 (39%), Gaps = 38/373 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V LA ++ GR HAYLF G+ G GK A LA+ L C + C CD+C Sbjct: 17 QPRVRDFLARAVTSGRASHAYLFLGSPGSGKLDAAWALAQALLCGEDGVSGACASCDDCG 76 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + + D+ S T + TR+LL++V AP R + KVY++D L ++ NA Sbjct: 77 RVARRTHPDVHYFAPESATGYLIAQTRELLEDVALAPIRAKAKVYIVDRAEQLRANTANA 136 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLKTLEEPP V F+L + + TI+SRC + L +E + EH Sbjct: 137 LLKTLEEPPAGVTFILLGSSADAMLPTIVSRCQCVPFRPLSLEDAATAV------EHATG 190 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV- 257 P +A A GS A+ + +AV +L D+ L+ + ++ Sbjct: 191 LPAGKCRMAVAVAGSPARAVEFLKSGDRQTARRAMVRAV-DLLAHADEADILAAAKDLMG 249 Query: 258 ---------EANGERVMALINEAAARG---------------IEWEALLVEML---GLLH 290 ++ + V+ + +RG E ++ + LL Sbjct: 250 AIKAPLAEVKSTQQAVLEQNQDYLSRGALKQLEDRNKRELNARERSGIMEALASVRSLLR 309 Query: 291 RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE 350 A+V+L+ + + + +A + T + + + ++ +E Sbjct: 310 D-ALVRLASESEPVVNEDVSDVVERIAARVTVTGVTRALDAVSSAEARIARNVTPQLAIE 368 Query: 351 MTLLRALAFHPRM 363 + L Sbjct: 369 VMLFDIRKALQCP 381 >UniRef50_C7RBH1 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBH1_KANKD Length = 332 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 118/319 (36%), Gaps = 30/319 (9%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 + + G + HA L G G+G+ + A+ LA+ L C CG C +C E G Sbjct: 13 KRVQDQFQQGSLPHAILLMGPEGIGRENFAQSLAEWLLCLNRQD-EACGECKSCFLFEAG 71 Query: 86 RFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D +D ++ V R+L+ +Q + +G +KV I V ++ SFNALLKT Sbjct: 72 HHPDYHLLDIEQDKTQISVGQVRELITAMQESSHQGGWKVANITNVQAMNASSFNALLKT 131 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP ++ +L T+ Q +P+TI SR L E+++ L Sbjct: 132 LEEPQDNTLLILQTSQLQGVPLTIRSRAQLLSLSVDGSEEVKAWLIER------------ 179 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 +G++ AL + V+ + + + + + Sbjct: 180 --------QGNMTQALEAAINLFPQAPYKAEDFGVNGDT-LKYAEFIVQINDLVAGKGSP 230 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + + + + M + I ++Q + + + LA+ I Sbjct: 231 --IEMAQFWHEELADAVFWMQLM---VRDILLLQQANKEADLLFMQQKQELEGLAKAING 285 Query: 323 TDIQLYYQTLLIGRKELPY 341 L + + ++ + Sbjct: 286 QGWLLLLEKINELQRLIKQ 304 >UniRef50_C0BIX6 DNA polymerase III subunit delta' n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BIX6_9BACT Length = 367 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 61/378 (16%), Positives = 124/378 (32%), Gaps = 58/378 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TA 70 + +++GQE + L + + ++ HA LF+G G G I+ + L + + Sbjct: 1 MIWKNIIGQEDIKKQLEHLIDSNQVPHAQLFTGLSGYGGLPISLAFSLALLGISSECSSG 60 Query: 71 TPCGVCDNCREIE-------------------------------QGRFVDLIEIDAASR- 98 P G + + G + D E Sbjct: 61 KPLGEKIHHPDFHFVYPVVKRGTEKVAYCSDYSSEWTAFLSESLYGNYNDWFEAIVEGNK 120 Query: 99 ---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 V++ L + G KV +I +++ + N LK LEEPP++ F+L Sbjct: 121 QGLIGVKEIEKLHQKMHLKSYSGGNKVCVIWGTERMNKVASNKFLKILEEPPQNTYFILI 180 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 D + L T++SRC ++ + + + L + ++ L AEG R Sbjct: 181 AEDIEMLLPTLVSRCQLVNIPPITNKVLEASLSSEIKDKK---------SLVTQAEGDYR 231 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 + + L A + + + ++M + + G Sbjct: 232 RLQRIVQN---------TNNKEFEALLIAGLRVAFKVKKDVNS--IVKLMEWTGKLSQIG 280 Query: 276 -IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 E +A L + ++ S L + + + ++A I +IQ I Sbjct: 281 KEEQKAFLNYGVQFFRDAFLINYSLHKLVHYQTENDFDIEKIAPFITSNNIQDLISLFEI 340 Query: 335 GRKELPYAPDRRMGVEMT 352 ++ + +M + Sbjct: 341 SHYQILRNANAKMVFDNL 358 >UniRef50_C1DCQ8 HolB n=2 Tax=Neisseriaceae RepID=C1DCQ8_LARHH Length = 329 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 82/355 (23%), Positives = 137/355 (38%), Gaps = 47/355 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-CGVC 76 + Q+ LA+G R+ A L +G +G+GK AR LA+ L CE + CG C Sbjct: 4 LPWQQADWHQLAHGFE--RLPGALLLAGPQGIGKDRFARFLAQSLLCEQPVADHAACGEC 61 Query: 77 DNCREIEQGRFVDLIEIDAAS-----------RTKVEDTRDLLDNVQYAPARGRFKVYLI 125 + CR G D + S + K+E RD++D Q RG +V ++ Sbjct: 62 EACRWFAAGNHPDYRYLAPESREDDKGARRLAQIKIEAIRDMIDFAQLTAHRGGRRVIVL 121 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 + L+ + NALLK LEEPPE V F+L P++L T+LSRC L D EQ Sbjct: 122 EPAEALNLAAANALLKILEEPPEDVHFILVAHHPRRLLPTLLSRCRTLVLTPPDAEQALD 181 Query: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245 L +A + L A G+ AL+ ++ Sbjct: 182 WL----TANGVADAGQELAH----AGGAPF-ALTEPERIPLRER---------------- 216 Query: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGND 305 L++ + + +++++ E + L + LH + V L+ + Sbjct: 217 ------LIDTLAHPDAGQILSVAAELDRARLALAEPLDWLRKWLHDLMSVTLAGS--VRY 268 Query: 306 MAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360 + + LA + + + LL + + R+ +E L + Sbjct: 269 HPERQAELSRLAGRTDAVRLVRFDRELLERVPFGQHTLNVRLQLEALLFDYQSLF 323 >UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepID=A5WC21_PSYWF Length = 439 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 74/415 (17%), Positives = 142/415 (34%), Gaps = 53/415 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA++ RP+ +V+GQ H+L + + G + + + G G+GKT+IA LLA Sbjct: 13 IPLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVEHGHLP-SLILHGEAGIGKTTIAMLLAD 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG-- 118 + + A T V+ R++LD + G Sbjct: 72 AVGRPFYPLS-------------------------AINTGVKQLREVLDAGSSSGQGGLD 106 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V IDE+H ++ +ALL +E + + +LSRC + L+ Sbjct: 107 FASPVVFIDEIHRFNKAQQDALLGAVESGDITLIGATTENPSFSVNNALLSRCQVYRLQP 166 Query: 178 LDVEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGSLRDALSLTD---QAIASGDG 230 LD QI L+ L+++ ++ + +AL +A A+G R AL+L + QA Sbjct: 167 LDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQASDHSKQ 226 Query: 231 QVSTQAV------------SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 + G D ++++++ ++ + + + G Sbjct: 227 PIVIDDALLSSVAQTTLQRYDKDGDQHYDIISAMIKSVRGSDPDAALYWMARMLVAGEPP 286 Query: 279 EALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK 337 E + ++ L I + L + + I + +Y T Sbjct: 287 EFIARRLVILASEDIGNANPNALLLADAALRSVKAIGMPEARIILGQVVVYLATSAKSNS 346 Query: 338 ELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ 392 A ++ M + + H R + + + P Q Sbjct: 347 TY-LAINKAMQLAQQDQSPVPMHLRNGVTKLMQSQGYGEGYIYPHDYPNHYQPQQ 400 >UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID=B2THM3_CLOBB Length = 428 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 72/426 (16%), Positives = 151/426 (35%), Gaps = 62/426 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA RP D VGQ H+L T L N + +I + +F G G GKT++A + Sbjct: 1 MS--PLADLMRPSKIEDFVGQRHILGENTPLYNLIKSKKICNC-IFYGPPGTGKTTLANI 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +AK ++ + A+ V+D +++ + + Sbjct: 58 MAKYVDKK-------------------------FYKLNATTASVKDIQNITNELDNLLNY 92 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 V IDE+ ++ +LL+ +E+ + + I+SRC F + Sbjct: 93 AGV-VLYIDELQHFNKKQQQSLLEFIEDGRITLIASTTENPYFVIHKAIISRCNIFAFEP 151 Query: 178 LDVEQIRHQLEHILNE---EHI--AHEPRALQLLARAAEGSLRDALSLTDQAIASG---D 229 L + I LE L++ E I + AL+ +A ++G R A ++ + +I S Sbjct: 152 LIISDIIVGLEKSLDKLINEGIEVTYSNEALKYIAEISQGDYRKAYNILELSINSQMTLH 211 Query: 230 GQVSTQAVSAM---------LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 ++S + + G + +L +++ ++ + + + G Sbjct: 212 KEISVDYIEKLGQSNMRADNSGDEFYNLLSALQKSIRGSDSDAAIHYLARLIKGG----- 266 Query: 281 LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTDIQLYYQTLLIGRK 337 + ++ RI+++ +G + +LA + + ++ L+I Sbjct: 267 ---NIAAIIRRISVI--VAEDIGLAHPNALTVVNSGLDLAMKVGFPEARIVLAELVIYLA 321 Query: 338 ELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAP 397 LP + + + + + + + + A P Sbjct: 322 TLPKSNSAYLAINSAMNDLESINFGDVPKHLKDGHYAGAESLGVGGYKYPHDYPNHYIKQ 381 Query: 398 QQAPTV 403 + PT Sbjct: 382 EYLPTE 387 >UniRef50_Q6MP27 DNA polymerase III delta' subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MP27_BDEBA Length = 314 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 122/341 (35%), Gaps = 38/341 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 V+G + + + G+ +LF G G+GK A LA+ L C + CG Sbjct: 5 LDFVLGHQETIKKMVESFENGKPGQTFLFVGPGGIGKKLTAMGLAQALLCPSSPRG--CG 62 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C +C I QG L I K+E +++L+ + G +V +ID+ L+ Sbjct: 63 KCPSCFRISQGSHEGLKLIAPNGANIKMEQAKEVLEFLSLKSLTGN-RVIVIDQAQTLNP 121 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N+LLKTLEEPPE F L + TI SR + L E + +++ Sbjct: 122 QAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFRPLTQEDLGKRVK----- 176 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 A +AA GS Q + +V +AV + Sbjct: 177 --------APAWALKAAGGSFEK----LAQLQDGPEQEVREKAVELLT------------ 212 Query: 254 EAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 + + + ++ + + + ++ +G L A+ A Sbjct: 213 --LFIQDADFLLNELWRNEFKDRAQGQRMISYWIGFLKD-AICLQEGAKTQIVNLDQAPL 269 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ LA + I Q L + D ++ +E Sbjct: 270 IKVLAE-LERPRILNLIQKALQVEQAFAANRDPQLIIEEFY 309 >UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZU9_9BACL Length = 452 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 112/308 (36%), Gaps = 51/308 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 ++LA + RP + + +GQEH++ L + ++ + L G G GKT++A + Sbjct: 30 RLLADRMRPTSLDEYIGQEHIVGPGKLLRRAIEADQVS-SILLYGPPGCGKTTLAHI--- 85 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 I + + ++A V+D R++++ Q G Sbjct: 86 ---------------------ISHHTKAEFVRLNAVD-ASVKDVREVIEKAQNDKAFYGT 123 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DEVH + +ALL +E+ + ++SR F L+ L Sbjct: 124 KTILFLDEVHRFNSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLEPLT 183 Query: 180 VEQIRHQLEHI-LNEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ- 231 E + ++E + + AL +A A G +R AL+ + A + Q Sbjct: 184 KEHSLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMANGDIRRALNALELAAMTTPPQP 243 Query: 232 -----VSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ + + + D + +++ ++ V + G++ Sbjct: 244 DGTVHITLEVAEESIRRPLVKADESTQYDVLSAFHKSIRGSSDAAVFWFLYAVEKLGMDP 303 Query: 279 EALLVEML 286 + ++ Sbjct: 304 MTFIRRLI 311 >UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase interacting protein isoform 1 n=2 Tax=Apocrita RepID=UPI0000DB7733 Length = 433 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 110/321 (34%), Gaps = 57/321 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 LA K RP F D +GQE V+ T L L+ G I + +F G G GKTS+ +++K Sbjct: 13 ISLAEKMRPACFHDYIGQEKVVGSNTILQQLLTKGHIP-SMIFWGPPGCGKTSLTNIISK 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + G V++I + A S V + +++++ + + Sbjct: 72 I------------------SKEMHGEKVNIINLSATSS-GVSNIKNIINKTKTESKFNQI 112 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++D++H ++ + L +E + L +LSRC F L L + Sbjct: 113 -IVIMDKIHRFNKLQQDIFLPHVETGTFTLIGTTTENPSYSLNSALLSRCRIFALNKLTM 171 Query: 181 EQIRHQLEHILNEEH---------------IAHEPRALQLLARAAEGSLRDALSLTDQAI 225 I L ++ + A+ LA +G R AL+ + AI Sbjct: 172 LNIVEILCKAISSINGEIYNFSLKNFSKPHFFINKTAIDWLAEVCDGDARVALNDLELAI 231 Query: 226 ASGDGQ--------VSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMAL 267 ++ + V + +L +++ + Sbjct: 232 KIKISNKLNSNFVSITLEDVKESVKQTHMLSDKQSNNIQHLYSALHKSIKAGKENASLYW 291 Query: 268 INEAAARGIEWEALLVEMLGL 288 + + + ++ + Sbjct: 292 LARIMDIKEDPVDIARRLIRI 312 >UniRef50_C7RR77 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR77_9PROT Length = 348 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 71/365 (19%), Positives = 123/365 (33%), Gaps = 49/365 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 + V L ++ HA L +G RG+GK +AR A+ L CE + CG C C Sbjct: 7 HDQVWQQLRA--RRAQLPHALLITGQRGIGKFDLARRFAESLLCENVTPAGSACGSCLAC 64 Query: 80 REIEQGRFVDLIEI-----------------------DAASRTKVEDTRDLLDNVQYAPA 116 + QG DL + A+ + ++ R L + Sbjct: 65 GWLAQGNHPDLRLLQPDALAENESSEAVEGEGGGGRKKASQQITIDQVRGLDAFLHLGTH 124 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R +V L+ ++R + NALLK+LEEP + F+L ++P +L TI SRC ++ Sbjct: 125 RHGVRVVLLSPAEAMNRATANALLKSLEEPIANTLFILVASEPHRLLPTIRSRCQSVPVR 184 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L A+ A GS A+ L G Sbjct: 185 RPSRHLAVQWLGQAGVN-------DAIDDWLALAGGSPLLAVELA--------GSGERAL 229 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 + A+L + + + A + + +A R + L L + + Sbjct: 230 LDALLAQVARTEGFDPLAA------AANLDKLVKADKRPAPLKRTLDWAQKWLFDLTLAS 283 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + ++ LAR + + + L + + + R+ +E L Sbjct: 284 AGLSPR--YFLPQASLLQRLARATDTGKLLAFNRKALQYKAQCEQPLNSRLFLEDFFLNY 341 Query: 357 LAFHP 361 Sbjct: 342 AGLFR 346 >UniRef50_A0B6D7 Replication factor C large subunit n=1 Tax=Methanosaeta thermophila PT RepID=RFCL_METTP Length = 467 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 39/303 (12%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANG---LSLGRIH-HAYLFSGTRGVGKTSIARLLAK 60 A K+RP+ ++G ++ L GR + G GVGKTS A LA Sbjct: 3 SWAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALAS 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 + D IE++A+ + E + + + GR Sbjct: 63 EM------------------------DWDYIELNASDQRTAEIIKSIAGPASQVSTFSGR 98 Query: 120 FKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 ++ ++DE L A+L+ ++ + V + + + + C Sbjct: 99 RRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILI--ANEYYNIEKPLRDACRGVQF 156 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 +++ + I L I E I EP A+ +A + G LR A++ + A A G + + Sbjct: 157 RSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLE-AAARGLKHLRLE 215 Query: 236 AVSAMLGTLDDDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLVE-MLGLLHRIA 293 V+ + +++++ + + + + + + E + + Sbjct: 216 DVATSERDV-KASIFRVLDSIFKGEDSRSALEATYQLDESPEDLIHWIDENLPIVYKDRE 274 Query: 294 MVQ 296 + + Sbjct: 275 LAK 277 >UniRef50_A1SDP5 DNA polymerase III, delta prime subunit n=2 Tax=Actinomycetales RepID=A1SDP5_NOCSJ Length = 385 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 74/390 (18%), Positives = 137/390 (35%), Gaps = 58/390 (14%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + +VGQ AL + HA+LF+G G G+++ A A L CE CG Sbjct: 4 WDGLVGQHRPSEALRAAAHGQGMSHAFLFTGPPGSGRSNAAVAFAAALQCERPED-RGCG 62 Query: 75 VCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 C C + G D+ I V++ RDL+ AP R+++ ++++ L+ Sbjct: 63 ECHECHTVLTGSHADVAVIRTEKLSIGVDEMRDLVRRSALAPVGRRWQIMIVEDADRLTE 122 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 ++NALLK +EEP + ++L + + T+ SRC L + + L Sbjct: 123 RAWNALLKAIEEPADRTVWMLCAPTVEDVLPTVRSRCRLVTLTTPTTDDVASFLVRA--- 179 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----------------------- 230 + ARA++G + A +L Sbjct: 180 --DGVDAAVASYAARASQGHIGRARALARDEATRNRRREVVALPARLVSLRACMEAATSL 237 Query: 231 -QVSTQAVSAMLGTLDDDQALSL-------------------VEAMVEANGERVMALINE 270 +V+ Q + G LD + L + + + R + Sbjct: 238 AEVAKQEAELVTGELDAREKADLDAAYGVVERGRRPREYAPALRDLEKDQKTRAKRRYLD 297 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ 330 RG L++++ + A+ + AA I + LAR P Sbjct: 298 VVDRG------LMDLVSVYRD-AIAVATGAAGLLVNEEIRGDVELLARVSTPEVNLRRIA 350 Query: 331 TLLIGRKEL-PYAPDRRMGVEMTLLRALAF 359 + R+++ + + +E ++ +A Sbjct: 351 AIFEAREQMLEFNVQPMLALESMMVALVAP 380 >UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q3_MYCHP Length = 404 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 105/340 (30%), Gaps = 49/340 (14%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 LA RP+ D + + + +++F G G GKT+I+ +LA L Sbjct: 5 LANLIRPKILEDFICPQEQKKLFQKIIENNDY-RSFIFYGKPGTGKTTISYILANAL--- 60 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 V+ +AA K + L N K+ +I Sbjct: 61 ---------------------KVNYEYFNAAIENKEDLVHKLKLN----------KILII 89 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185 DE+H L++ + LL LE + KL + SRC + ++ + Sbjct: 90 DEIHRLNKDKQDILLPYLENDLITIYATTTENPYFKLNPALRSRCSIIEITKPTIQDLSS 149 Query: 186 QLEHILNE-EHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML-- 241 L++ + + LA A G R AL+ D + D + S +A+ ++ Sbjct: 150 CLKNACLKTFGVDLNKDIADYLALQANGDFRSALNNLDLIMLIFKDQEFSLEAIKKIIPS 209 Query: 242 --------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 G D + +++ ++ + + G + + Sbjct: 210 IQFSSDESGDNHYDYLSAFHKSLRGSDIDAALYWGFIIIKSGDFDGLFRRMLCASYEDVG 269 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 M + R+ +P T L Sbjct: 270 MANPKLGSEVLSAIECFERIGMPEGYLPITQ--AILNICL 307 >UniRef50_A4SXG7 DNA polymerase III, delta prime subunit n=2 Tax=Polynucleobacter necessarius RepID=A4SXG7_POLSQ Length = 377 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/389 (18%), Positives = 130/389 (33%), Gaps = 53/389 (13%) Query: 13 QTFADVVGQEHVL-TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA 70 ++ GQ L + L +A + G G+GK ++A LAK L CE+ Sbjct: 1 MNLSNSPGQVAPWLQPLWDSLDFSNFPNALILHGQSGIGKFNLAVELAKALVCESTSSEH 60 Query: 71 TPCGVCDNCREIEQGRFVDLIEIDAA---------------------------------- 96 PC C+ C G D I + Sbjct: 61 KPCNHCEACHWFSTGNHPDFIALVPETHRRLLPHAEYASDEPPKKGRAARDDLDGEASEK 120 Query: 97 ---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 +E+TR ++++ RG +V LI + ML S N LLK+LEEPP + F+ Sbjct: 121 KEKKNISIEETRHAIESLSIGSHRGGNRVILIYPLEMLRHDSANTLLKSLEEPPANTIFI 180 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEG 212 L ++ TI SRC D EQ L+ L I + + G Sbjct: 181 LLADRVDRVLPTIRSRCRLLTAPRPDREQGVAWLKSQLANLSDIKINDADIDTIYDEQGG 240 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 + D IA + + A+ + L+++M + + + Sbjct: 241 APYAV---LDSLIARHNKDDKDELTIAIQASRL------LLQSMSQGGRMPWLETAEKI- 290 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ LL M + + V + L++++ + +++ L Sbjct: 291 -HKAQYSFLLATMQRWVSDLQTVAQGGTPR--YYPKHLNTLNALSQSVRIAKLLQFWKAL 347 Query: 333 LIGRKELPYAPDRRMGVEMTLLRALAFHP 361 + R+ + R+ +E L + Sbjct: 348 IQARRSENHPLASRIQLEALLSQYQQAFE 376 >UniRef50_Q15U04 DNA-directed DNA polymerase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15U04_PSEA6 Length = 300 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 19/252 (7%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-----TATPCGVCDNC 79 L L+ + +HHA L G +G+GKT A+ L + L C PCG C +C Sbjct: 9 LQQLSQRAATLSLHHALLLKGEKGIGKTEFAQQLGRFLLCANKPALSKDNLGPCGHCQSC 68 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 G DL EI + + V+ RD + + + KV LI + H ++ S NAL Sbjct: 69 LLSAAGNHPDLYEIRSDKQIGVDAIRDAIKKLSGSAQLSGAKVLLIHDAHTMTESSANAL 128 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LKTLEEP + LL ++ P++L TILSRC + L + ++ L N+E A+ Sbjct: 129 LKTLEEPTNNTFLLLLSSHPERLLPTILSRCEKVALFSPTQQECIDWL----NKEGYANV 184 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 AL R S + ++ +GT D A+ Sbjct: 185 DDAL---LRLYGTSPLVLIEHLKTPPKVNYQELVENLGYLNVGTADPA-------ALATK 234 Query: 260 NGERVMALINEA 271 + + ++ Sbjct: 235 WQDEAITIVKWL 246 >UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB Length = 437 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 78/444 (17%), Positives = 139/444 (31%), Gaps = 60/444 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 Q LA RP++ +VVGQ+ + L ++ ++ + + G GVGKTSIAR + + Sbjct: 14 QPLAAALRPRSLDEVVGQKTLTAKGSVLRRRIAANQLG-SIVLYGPPGVGKTSIARAVGE 72 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 LN E A+R V+D R L D + P Sbjct: 73 MLNKEFKQLH-------------------------ATRAGVKDIRQLADEARIRPI---- 103 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DEVH S + LL EE LP ++SR L+ + + Sbjct: 104 -LIFVDEVHRFSATQADDLLSICEEGTADFIGATTQNPYTALPKALVSRSTILKLEPIAI 162 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----Q 231 E + L L + P L+++A + G R AL+ + + Sbjct: 163 EDMEAVLARGLEHLAEMGIEVVLAPEQLRIIAGRSGGDARSALTTLESLAIGHGDSGSVK 222 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 V+ + + G D + +++M + E V+ + G + + Sbjct: 223 VTDDMLEEVYRAAPVNHDRSGDQHYDIISAFIKSMRGGDPEAVLYWLARLIHGGEDPRFI 282 Query: 282 LVE-MLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340 M+ + + + A + P I L + L + R Sbjct: 283 ARRIMIQASEDVGLADNTALQTAVAAAQAVEMI-----GYPEARIILAHAALHVTRAPKS 337 Query: 341 YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA 400 + + + +PL + Q + +P P Sbjct: 338 GSANHGIS-AALSAVGSEPPLPVPLHLRDAHYQGAEQLGHGGYRSPHNDPRGWVDQTYAP 396 Query: 401 PTVPLPETTSQVLAARQQLQRVQG 424 P S+ A +R Sbjct: 397 GMQPGRFYQSEAREAATFEKRADE 420 >UniRef50_C5C8W4 DNA polymerase III, delta' subunit n=4 Tax=Micrococcaceae RepID=C5C8W4_MICLC Length = 396 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 129/373 (34%), Gaps = 47/373 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA 70 P FAD+ GQE + L + R HA++F+G G G+++ AR A L CE A Sbjct: 6 PAVFADLAGQEAAVAQLRRAAAADRPTHAWMFTGPPGSGRSTAARAFAAALQCEVADPAA 65 Query: 71 TPCGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG C CR + G D+ + A ++ED R L++ Q PA GR++++L+++ Sbjct: 66 RGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRIFLMEDAD 125 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ + N LLK +EEPP ++L T P + T+ SRC L VEQ+ L Sbjct: 126 RMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVEQVAELLHR 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 + AR ++ + A L A + D Sbjct: 186 R-----DGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAMAL 240 Query: 250 LSLVEAMVEAN----------------------------GERVMALINEAAAR------- 274 + + + +A ++ + Sbjct: 241 AATLAEVSKAEAESAAEARDAEELEALRRSLGLEPVEPVPPKLRHHVKRLEEDQTRRRRR 300 Query: 275 --GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA--IELRMRELARTIPPTDIQLYYQ 330 + +++++GL + VQL + A + Sbjct: 301 AVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRGEIEAYARGAAGDSAEVLAR-ID 359 Query: 331 TLLIGRKELPYAP 343 + R + Sbjct: 360 AVATARGRIAANV 372 >UniRef50_C0B0Z4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B0Z4_9ENTR Length = 328 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 132/354 (37%), Gaps = 47/354 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M++ L + GR HHA L G+G +++ L++ Sbjct: 1 MNWYPWL--------------NQAYRQLISIYQEGRGHHALLLHAIEGMGGEALSYGLSR 46 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPAR 117 L C+ C C +CR + D + + S +E R + + +++ + Sbjct: 47 WLMCQNRQGLKSCNECHSCRLMLAETHPDWHILQSEKGKSSIGIEAVRKVTEKLEHHAQQ 106 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 F+V I +V L+ + NALLKTLEEPP+ FLL P+ L T+ SRC +HL Sbjct: 107 SGFRVVWIKDVEALTEAAANALLKTLEEPPKDTYFLLNCQHPEVLLATLRSRCFYYHLAT 166 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 +++ H L+ L A+ AL ++ + ALSL + ++ Q Sbjct: 167 PNLQHATHWLQQQLPNIPYANSVTAL----NLSQNAPVLALSLLKDEW--KEREIFCQ-- 218 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 +L ++ + + + +N+ A + L + + L Sbjct: 219 -------------ALYTSIQQHDLYSFLPQLNQDNAERRLYWLLSLLLDAL------KYQ 259 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGV 349 + A + + + L++ + R +L A +R + + Sbjct: 260 TNAQVYCVNQDQQALIMALSQ-WSSDILLSTIDGWKQCRYQLMTIPALNRELLL 312 >UniRef50_A5GNS9 ATPase related to the helicase subunit of the Holliday junction resolvase n=46 Tax=cellular organisms RepID=A5GNS9_SYNPW Length = 737 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 142/495 (28%), Gaps = 67/495 (13%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ + VGQ +L L ++ R+ + + G GVGKT++AR++A Sbjct: 23 PLADRLRPRNLDEFVGQGAILAEGRLLRRAIAADRVGN-LILHGPPGVGKTTLARIIA-- 79 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRF 120 A V+D R ++ + Q G Sbjct: 80 -----------------------NHTRAHFSSLNAVLAGVKDLRAEVSEAGQRLERHGLR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDEVH + +ALL +E + ++ ++SR F L+AL Sbjct: 117 TILFIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKALVSRSRLFRLQALTP 176 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAI----ASGD 229 + L L + I EP A L A G R L+ + A+ A + Sbjct: 177 GDLSKLLNSALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALELAVDSTPADEN 236 Query: 230 GQVSTQA------------VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G V + G D + ++++ ++ + + + G Sbjct: 237 GLVRIDLGIAEESIQQRAVLYDKQGDAHFDTISAFIKSIRGSDPDAALFWLARMVEAGEN 296 Query: 278 WEALL-VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQ------ 330 + ++ + + + AA R+ P LY Sbjct: 297 PRFIFRRMLISAGEDVGLADPQAVVVVEACAAAFERIGLPEGLYPLAQAALYLAGTDKSN 356 Query: 331 ---TLLIGRKELPYAPDRR--MGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 +++ A + + AF P R+ VA + Sbjct: 357 STGGFFEALRQVRSAQRQDVPTHLRDANRDGDAFGDGQGYRYPHAFREH--WVAQQYLPD 414 Query: 386 PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNA 445 Q + Q + A + A S + Sbjct: 415 ALQGEAFWAPSHQGWEGQRRERILERRAAQLAAAVEAEDAHPLLVSSGPDQPQLERWLQR 474 Query: 446 ALERLASVTDRVQAR 460 L ++ R Sbjct: 475 QLAIDGERLQTLRQR 489 >UniRef50_C5VJN5 DNA polymerase III, delta subunit n=2 Tax=Prevotella RepID=C5VJN5_9BACT Length = 379 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 126/388 (32%), Gaps = 68/388 (17%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F++V+GQE V L + R+ HA LF G +G GK ++A A L Sbjct: 1 MNFSEVIGQEAVKERLIQMVKEDRLPHALLFCGPQGAGKMALAMAFASYLLAGDEAEEAT 60 Query: 73 CGVCDNCREIEQGR-FVDLI---------------------------------------- 91 N R + + DL Sbjct: 61 SSTVSNARAMLRNWEHPDLHFSYPTIKLPSMSGEHQPVSADFAKEWHGLIMQGTYFTMNQ 120 Query: 92 EIDAASRTKVEDT------RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 ++ T + +L + ++G +KV +I ++ S N LLK LEE Sbjct: 121 WMNQMGATTQQAIITGAESDELSRVLALKSSQGGYKVSIIWLPERMNLTSANKLLKLLEE 180 Query: 146 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 PP+ FL+ +P+KL TI+SR + +K ++ E I L + + A Sbjct: 181 PPQGTIFLMVCEEPEKLLETIISRTQRIDVKRINDEAIEQALIN-----KRGIDTDAAHR 235 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVM 265 +AR A GS AL D +G+ + M L+ N + + Sbjct: 236 IARIANGSWLKALEAMD----TGNENREFHNMFQM-----------LMRLCYLRNVKDLK 280 Query: 266 ALINEAAARGIEW-EALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 A G E +L + M L E + AR I + Sbjct: 281 RWSEVVAGYGREKERRMLTYFQQQVRENFMFNFQTPELNYMTLEEENFAKNFARFINEAN 340 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + +++ + ++ Sbjct: 341 VIEINELFQRANRDIGQNANAKIVFYDM 368 >UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desulfovibrionales RepID=C6BV47_DESAD Length = 420 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 109/340 (32%), Gaps = 46/340 (13%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Q LA + RP+ + GQ H+ + R+ LF G G GK+++A LLAK Sbjct: 9 QPLADRIRPKKIDEFFGQNHIRERVEAFERSKRLPSLLLF-GPPGCGKSTLAMLLAKS-- 65 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 GR I +A + + R + Sbjct: 66 --------------------TGRHFMRI---SAPESGITALRK---------QLAGMDIL 93 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE+H S+ + L LE + + +LSR L++L + Sbjct: 94 ILDELHRFSKAQQDFFLPILESGEITLLATTTENPSFSVTRQLLSRLHVLRLRSLGKTDL 153 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-- 241 E I +L L+ A G R L+L + + + + +L Sbjct: 154 LAICNRACEELEIELSEDSLNLITSMAGGDGRSLLNLLEYTSQLPAEKREAENLRKILPE 213 Query: 242 --------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM-LGLLHRI 292 G + A +L++++ ++ + + + G + + + + + I Sbjct: 214 TVIRGDRDGDSHYELASALIKSIRGSDPDAALYYLGCLIESGEDPKFITRRLIISAGEDI 273 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 + + + IP ++ +Y Sbjct: 274 GLADPYAMTMAVSCQQAVEFIGMPEGFIPLSEAVVYLALA 313 >UniRef50_A6VXK9 DNA polymerase III, delta prime subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VXK9_MARMS Length = 312 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 129/338 (38%), Gaps = 46/338 (13%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L + HA L +G GVG+ +A + K L CE A CG C +C+ + Sbjct: 15 VQVLKQ---TNSLSHALLITGADGVGQEELAHEMVKNLMCE-KNQAAACGTCHSCQLMSA 70 Query: 85 GRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D +D AS KV+ R L+ + P G+ KV LI ++ ++ NA+LK L Sbjct: 71 DTHPDFRVLDGEASTIKVDQVRLLVRQISQKPQVGQNKVVLITHAQAMNINAANAVLKAL 130 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHE 199 EEP + F+L ++ L TI SRCL ++ + +++ L + + + Sbjct: 131 EEPADRTFFVLTSSQSSSLMPTIRSRCLLVNVPTPSMNEVKSWLMQQPDGKALGALFWLT 190 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + +LLA +G + L DQ + G VS AV L + + + Sbjct: 191 TQPFRLLAIQQQGKTQLYAGLPDQLTSMLRGTVSVSAVLKGLDSNNIEDY---------- 240 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + +LH+ + + A + + I + Sbjct: 241 ----------------------CNGLAAILHQ-CICHSTGAPIDEALQTIYDTLIA---R 274 Query: 320 IPPTDIQLYYQTLLIGRKEL-PYAPDRRMGVEMTLLRA 356 + + L YQ+L + +L + M + L Sbjct: 275 LGIQTLMLRYQSLQKLKSDLQKTNLNPIMQLTHELNHW 312 >UniRef50_C3JCU0 Putative DNA polymerase III, delta prime subunit n=2 Tax=Bacteria RepID=C3JCU0_9PORP Length = 385 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 130/394 (32%), Gaps = 63/394 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F D++G E + L + G I H LF G+ +A + LNC Sbjct: 1 MQFRDIIGYESLKEELRRISATGHIPHNILFDIEDGMPGVGLALAWIQYLNCSDPHHGDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDA---------ASRTKVEDTRD----------------- 106 CGVC +C+ + Q + D+ I S + R+ Sbjct: 61 CGVCPHCKMLSQLSYPDVHYIFPVVNATDVETPSDNFLSQWREMFAAEGAYFDHETWLRY 120 Query: 107 -----------------LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 L + + A + G +++ +I E ++ + N LLK +EEPP+ Sbjct: 121 LNAGKQQPVIYSKDAIALENKLSIASSEGGYRMVIIYEPDRMNEAAANKLLKLMEEPPDK 180 Query: 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 + ++L TILSR +F L L ++++ L + R L A Sbjct: 181 TIIVSVCFATEQLLETILSRMQRFELLPLTQDELKMGLRQFYPQAQ----ERDLLRAALR 236 Query: 210 AEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALIN 269 ++G L A + S + G L+ +V + + L Sbjct: 237 SDGILLRARQIL-------ANNTSIAKYTECFG--------QLIGDIVRKDVVALRKLSE 281 Query: 270 EAAARGIEWEA-LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY 328 + + G EW LV + A + L I P +I+ Sbjct: 282 KMDSEGREWIVAALVYFEECFRLSFTGNFTGAGTQFSTDREQAIFIALNEVITPANIESI 341 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 Y+T + + +M + T LR A Sbjct: 342 YRTTESAIRHVRGNVSAKMVLFDTFLRYTAALSP 375 >UniRef50_B0MJX8 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MJX8_9FIRM Length = 318 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 38/316 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + G++ LA R+ H + +G +G+GK + A+ A C PCG C Sbjct: 13 LFGKQRETALLAETAESDRLPHGIMLTGEKGIGKRTFAKWCAMLYLCREPENNMPCGRCR 72 Query: 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFN 137 +CR I G D+I E RD + P +V++ ++ ++ N Sbjct: 73 SCRNIISGEHADVIYAKGEKY-SKESVRDNVCFASTLPNDSDTRVFIYEDCEEMTEEQQN 131 Query: 138 ALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK +EEP ++ +++ ++ ++ TI SR + + + E+ L E+ Sbjct: 132 VLLKAIEEPSKYNRYIFTCSNTSQILETIKSRLVCIPISDMTAEECVSCL------EYNG 185 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 ++ + + + ++ D A + EA+ Sbjct: 186 YDSDTAKRAVELYGTNPGRIRDILSDE-----KRIKL-----------YDTAKKVTEALS 229 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + + A+ A + ++ + + V + Sbjct: 230 KKDEYSA-AVAMTACTTREDLYGVITILYENVTESLRVLETGGEPLL------------- 275 Query: 318 RTIPPTDIQLYYQTLL 333 + + Y+ L Sbjct: 276 -CLTKARLYALYEVLS 290 >UniRef50_Q6WI74 Gp44 n=1 Tax=Vibrio phage KVP40 RepID=Q6WI74_BPKV4 Length = 318 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 121/347 (34%), Gaps = 52/347 (14%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 + + +K+RPQ+ D V E V + +I + L S + G GKT++AR + Sbjct: 8 NELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLAD 67 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRF 120 + E ++ ++A+S + + DL G Sbjct: 68 MGYE------------------------VLFVNASSSRGIGLVQNDLPAFCSTVSFSGNP 103 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K ++DE L+ + AL +E+ ++V+F+L QK+ I SR +F Sbjct: 104 KAVILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKE 163 Query: 181 E------QIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 E Q+ + I +E ++ A L+ L + R + + +G + Sbjct: 164 EQLSCVKQMIVRSMQICKQEGVSVTNAAVLKELVKRNYPDNRKTIVSLQN--YARNGVID 221 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 +S + D +++A+ + + V +LI ++ LH + Sbjct: 222 EGILSEITAN---DDISEMLDALKSKDFKTVRSLI----------PKYSGDIASFLHNLY 268 Query: 294 MVQLSPAALGNDMAAIE---LRMRELARTIPPTDIQLY--YQTLLIG 335 + + I+ + + Y Q +L Sbjct: 269 KAAYTHLDGNSIPVFIQIVGEANNNATTCVDTEILLAYTLVQIMLEC 315 >UniRef50_A3CUW4 Replication factor C n=3 Tax=Methanomicrobiales RepID=A3CUW4_METMJ Length = 336 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 115/295 (38%), Gaps = 18/295 (6%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 + +RP+ D++GQ+ V+ L G + H L SG G GKT+ LAK L E Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPH-MLISGPHGTGKTAAVECLAKRLYGE 61 Query: 66 TGITA-------TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPAR 117 G + E ++ I R+ + + + ++ P Sbjct: 62 NWKANTTVFSATDLLGRGRSALETDERFS----MIYRKDRSLIVNFKQIVKWYASMRPLD 117 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 FK+ + ++ H L+ + AL +T+E +F+ T P + I SRCL Sbjct: 118 ADFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRCLPLFFAP 177 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 ++ + +LE IL E A + L+ AA+G LR A+ A + + Sbjct: 178 VESSLVLTRLEEILAAEGAAVPADDIDLIVYAAQGDLRRAIMYLQIAARAEQEF----DL 233 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGLLHR 291 + + + + A S A+ + N + + G+ ++ E+ + R Sbjct: 234 AEISRSETTNVATSAFVALRDGNFDAARRIAESLMIEYGLSAREVVGELRQVARR 288 >UniRef50_D0IB97 DNA polymerase III delta prime subunit n=7 Tax=Vibrionaceae RepID=D0IB97_VIBHO Length = 322 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 125/352 (35%), Gaps = 35/352 (9%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + + + L R+HHA L S G GK +A +LAK + C+ G+T P Sbjct: 1 MQAKRYPWHQEIWQSWQQLLGQDRLHHAILLSAPTGSGKIELAAMLAKTILCKNGVT-EP 59 Query: 73 CGVCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 129 CG+C +C+ + D + + V+ R G +V LI Sbjct: 60 CGICHSCQLFDADTHPDFHWLKPEAEGKQLGVDAIRAGNQYAWETSQLGGQRVILIQNAD 119 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 + + NALLKTLEEPP H F+L + + T++SRC ++ K + ++ + Sbjct: 120 RMGEAAANALLKTLEEPPSHCHFILLSQSMDTMLPTVVSRCNKWKPKLPEESVVKRWV-- 177 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 E E LQ+L R G+ A + + + Sbjct: 178 ----EGELFESVPLQVL-RINRGAPLAAKAFVENGSVA----------------RHKAVV 216 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAI 309 +++ G + + + E L + LL + +Q + Sbjct: 217 DGFASFVIQKQG--LFTVTEQVVKAQQEG---LQWLSFLLLDVVKIQQ-GSDEAIVHCDE 270 Query: 310 ELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRALAF 359 ++ LA ++P + + L + EL + + + L + Sbjct: 271 MKTLQTLASSLPHSQVMAQLMGLNRMKAELARHTGLNSELLISRWLTEFITA 322 >UniRef50_Q8NTJ5 ATPase involved in DNA replication n=8 Tax=Corynebacterium RepID=Q8NTJ5_CORGL Length = 419 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 51/367 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 + ++LF+G G G++ A++ A L C CG C++CR G D+ Sbjct: 50 MIHDSGFAQSWLFTGPPGSGRSVAAKVFAATLVCSNPDVVG-CGQCEDCRAAMGGSHPDI 108 Query: 91 IEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 I V+ R+++ +P G ++V + + L+ + NALLKT+EEP E Sbjct: 109 EHIVPQQLSIGVDAAREVIKAAAVSPVAGNWRVVIFENADRLTMQAANALLKTVEEPTES 168 Query: 150 VKFLLA--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 +L TTDP+ + +T+ SRC ++ + + + IL E +L A Sbjct: 169 TVMILCAPTTDPRDIAITLRSRCRHLYIPTPSIAE----VARILVAEG-NVSQADAELAA 223 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMV--------- 257 A+ + A L A + G + +LV+ + Sbjct: 224 AASGAHIGRARYLAHNNAAQRRRASILNLAELIFHGDVAFRSVNTLVKMVETEAKDSNKE 283 Query: 258 -----------------------------EANGERV--MALINEAAARGIEWEALLVEML 286 + + + + + LV++ Sbjct: 284 KEEAELEAVRISLGMGAKGKGVHKAVRGGAGDFKALEDQQKLRRTRFLRDSLDLALVDLA 343 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRR 346 G+ A++ S A +G +E +ELA + + + R+ + Sbjct: 344 GIYRD-AIIISSQAQVGLTHPDMEGLSQELATKVSQEGLLACLDAISKCRESFGFNVRPI 402 Query: 347 MGVEMTL 353 + ++ + Sbjct: 403 VAMDALV 409 >UniRef50_C3PJW1 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C3PJW1_CORA7 Length = 415 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 66/371 (17%), Positives = 136/371 (36%), Gaps = 54/371 (14%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATP-CGVCDNCREIEQGR-FVDLIEI 93 + H++LF+G G G++ A+ A L C + P CG C +C+ + + DL+ + Sbjct: 49 MSHSWLFTGPPGAGRSLAAQCFAAALMCTSADENGNPGCGRCPSCQSVLAKQAHTDLVYV 108 Query: 94 DAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 D + V + R+++ P+ ++V + ++ L + NALLKT+EEPPE Sbjct: 109 DPQEQFITVGEAREVIGRAASLPSVAPWRVVIFNKADRLRNEAANALLKTVEEPPERTVI 168 Query: 153 LLATT--DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 ++ DP+ VT+ SRC ++ A VE + QL E +L A Sbjct: 169 IMVAPSEDPEDFSVTLRSRCRYLYIPAPSVEGVVKQLVAEGTSE------DDARLAAVTT 222 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMV------------ 257 + A L ++ A ++ + G+ +L++ + Sbjct: 223 LRHVGRARHLVNEPAAQKRRAMAINLAEDVFHGSQAFQSVTALLKFIEKEAKDSHAAAEE 282 Query: 258 ----------------------EANGERVMALINEAAARGIE------WEALLVEMLGLL 289 + + + + + + + + LV++ G+ Sbjct: 283 AERSKIEQSFGVGAKGKGATKAQRDARSALKDLEDLHKKRAKRRIADGLDIALVDLAGIY 342 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 M++ A + ELA+ + + + R++LP ++ Sbjct: 343 RDALMLK-VGADVEMTHPDFAGLAGELAQRVSEDGLLAAQSAIRTCREQLPQNVTPQVAF 401 Query: 350 EMTLLRALAFH 360 + + R Sbjct: 402 DGMVGRLRMAC 412 >UniRef50_A9REP7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9REP7_PHYPA Length = 366 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 3/269 (1%) Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 R+KV +++ +L+ +NA L LEEPP+ V F+L TTD +++P T SRC +FH Sbjct: 7 HARYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQKFHFS 66 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + I +LE++ +E + E AL L+A ++GSLRDA+ L DQ D VS Sbjct: 67 KVSEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQVCLL-DKNVSVDL 125 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 V + G ++ L L++ + A+ + + E A +E L+ ++ GL+ I Sbjct: 126 VREVGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITDILAGS 185 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 L + R + + ++ + L +L A D+ + LL+ Sbjct: 186 LEVDRGSRKDGSFFNR--NFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTAALLQF 243 Query: 357 LAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 +P + A + Sbjct: 244 APDRSFLPSEASTDVALTSARPSTKTSEP 272 >UniRef50_C0GJA2 DNA polymerase III, gamma/tau subunits n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJA2_9FIRM Length = 294 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 117/338 (34%), Gaps = 66/338 (19%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +V G E + L + RI HAYLF G +A + A L CET P Sbjct: 1 MKWDEVSGSEKITRVLQAAVQADRIAHAYLFCGADEAAIKKLAAVFAASLLCETK---EP 57 Query: 73 CGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG+C +C++ DL +D K+E R L P R++V+++ + L Sbjct: 58 CGICAHCKKAANRSHPDLHWVDPEGKSLKIEQVRSLKRKAYLLPHEARYQVFILTDAGQL 117 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N+LLK LEEPP F+L +P L T++SRC F L+ + I Sbjct: 118 TTEGANSLLKVLEEPPPASVFILLAKNPAMLLPTVVSRCQVFSLQGGGEQSIPAL----- 172 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 A+ L + +G Sbjct: 173 ----------------------NHQAVELLEVLKNNGG-------------------IND 191 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 L++ + A E +L L + ++Q + E Sbjct: 192 LLDRL----------------AENEELTDFCDTLLLTLRDLLILQTTGQQSLLTQGRDEG 235 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGV 349 ++ P DI+ LL +K+L + R+ + Sbjct: 236 LLQPFLSVWPAEDIREALAVLLKLQKDLQSPVNVRLAL 273 >UniRef50_Q18E75 Hwa RFC intein n=13 Tax=root RepID=RFCS_HALWD Length = 649 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 27/265 (10%) Query: 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 +L+E++A+ ++ RD + N + G ++ +DE L+ + +AL +T+E+ Sbjct: 403 NLLELNASDERGIDVVRDRIKNFARSSFGGYDHRIIFLDEADSLTDDAQSALRRTMEQFA 462 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 ++ +F+L+ K+ I SRC F L IR Q + I E+I L L Sbjct: 463 DNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDGLDALV 522 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMAL 267 AA G +R A++ QA A+ V + V + T + ++V A ++ + + Sbjct: 523 YAAGGDMRRAINSL-QAAATTGEVVDEETVYTITSTARPEDIETMVTAAIDGDFTTARSQ 581 Query: 268 INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + ++ +++ LHR A + Sbjct: 582 LQTLL---VDTGMAGGDIIDQLHRTAWNLD----------------------LDEETTVR 616 Query: 328 YYQTLLIGRKELPYAPDRRMGVEMT 352 + + + + ++ +E Sbjct: 617 LLERVGEADYRITVGANEQVQLEAL 641 Score = 65.4 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGK 51 ++ K+RP T ++ GQE + L + + + H LF+G GVGK Sbjct: 15 EIWIEKYRPATLENIYGQEDTVDRLQSYIDRDDLPH-LLFAGPAGVGK 61 >UniRef50_C8NXE7 DNA polymerase III, delta' subunit n=2 Tax=Corynebacterium RepID=C8NXE7_9CORY Length = 439 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 130/383 (33%), Gaps = 51/383 (13%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + H++LF+G G G+++ A A L CE+ A CG C CR++ G D++ I Sbjct: 49 MTHSWLFTGPPGAGRSTAAVAFAAALVCESPADALGCGHCQACRDVFAGAHTDVVHIVPE 108 Query: 97 S-RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 ++ RD ++ P ++V +I++ SR + A+LKT+EEPPE ++ Sbjct: 109 GMTISIDTVRDTIIPAATRLPTVANWRVIIIEDADRFSREAPEAILKTVEEPPETTVIIM 168 Query: 155 AT--TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 TDPQ VT+ SRC ++ A V++ + IL E A EP A +L A + Sbjct: 169 CAPSTDPQDFSVTLRSRCRHLYVPAPSVDE----IVRILVSEEGAAEPDA-RLAAVTSLR 223 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMVE------------- 258 + A L + + + + G +LV++ Sbjct: 224 HIGRARRLVNSDASQKRRAAAINIAELVFHGDQAFQGVAALVKSADAEAKDAYASSDEEE 283 Query: 259 ---------------------ANGERVMALINEAAARG-----IEWEAL-LVEMLGLLHR 291 + + A + L LV++ G+ Sbjct: 284 RKRLENALGMGAKGKGAAKALRGTASSLKELEAAQKARGTRRLRDVLDLTLVDLAGIYRD 343 Query: 292 IAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEM 351 + + E E+A I + R L + Sbjct: 344 AMITSSGGG-VPLVHPDFEGLSTEIANHADLAGITECLDAVAECRARLHQNVMPVIAFNG 402 Query: 352 TLLRALAFHPRMPLPEPEVPRQS 374 L R P P Q Sbjct: 403 MLGRIRIACGVSSSPHPAAELQF 425 >UniRef50_Q8K9J2 DNA polymerase III subunit delta' n=4 Tax=Buchnera aphidicola RepID=HOLB_BUCAP Length = 328 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 110/343 (32%), Gaps = 43/343 (12%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M + K P + + HHA L +G+G + ++K Sbjct: 1 MKWYPWLIK--P------------YKKIIRLHERKKAHHAILIKTQKGMGVFKLVWFISK 46 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARG 118 L C C C C+ + D I V+ R + + + +G Sbjct: 47 WLLCLKPKGTNFCDNCHGCKLMSANNHPDWHTIINEKNDVFDVDSIRVINEKIFKRAQQG 106 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ + VH L+ + NALLK LEEPPE F L + KL T+ SRC + L Sbjct: 107 NNKIIFLPNVHKLTESAVNALLKILEEPPEKNWFFLIDYNYLKLHSTLKSRCFLYRLPLP 166 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++ + L++ +++I++ R + S A + + + + Sbjct: 167 LEKESLNWLKNNNKKDNISNLTS-----LRINQDSPISAKNFIESDLWDERKNL------ 215 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 SL ++ + N +++ ++ + + LL A+ Sbjct: 216 ----------YKSLSHSIKDKNLLKILPVLC-----KKNTIMKIDWICLLLFD-AVKTNF 259 Query: 299 PAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY 341 + ++ + + R L Sbjct: 260 NERKKLINCDQIKLINFFSKKYNNILLNKSIRKWTKCRYILSS 302 >UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI Length = 876 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 117/326 (35%), Gaps = 66/326 (20%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S+ L+ + RP +D +GQE +L + + +++ G G GKT++A+++ Sbjct: 193 SFAPLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELP-SFILYGPPGCGKTTLAQIV 251 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A ++ + A V+D ++++D + G Sbjct: 252 A------------------------SKSNYNINALSAVGS-GVKDIKEVIDKARNTLQFG 286 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + IDE+H ++ + LL +E + +L +LSRC F ++ L Sbjct: 287 KKTILFIDEIHRYNKLQQDVLLPAIESGIIILIGATTENPSFELNGALLSRCKVFKMEKL 346 Query: 179 DVEQIRHQLEHILN------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 E + ++ L + + + A++ LA A+G R A+++ D AI + + Sbjct: 347 TKENLETLIKRTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANKEEQ 406 Query: 233 STQ-------------------------------AVSAMLGTLDDDQALSLVEAMVEANG 261 + + + G + +L +++ ++ Sbjct: 407 TYKERMEEKHSTSGIVRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGSDA 466 Query: 262 ERVMALINEAAARGIEWEALLVEMLG 287 + G E ++ M+ Sbjct: 467 NATAYWVIRMLESGCEPLYIVRRMVR 492 >UniRef50_D2RSM2 AAA ATPase central domain protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RSM2_9EURY Length = 497 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 94/288 (32%), Gaps = 36/288 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP T ++V G L H A + G+ GVGKTS A LA + Sbjct: 3 WTEKYRPTTLSEVRGNNKARDKLEEWAETWDGHRDAVIVHGSPGVGKTSAAHALAGDMGW 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA----RGRF 120 ++A+ + + + Sbjct: 63 PVME------------------------LNASDSRGADVIERIAGEASKSGTLTGGEAGR 98 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHV--KFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++ ++DE ++ + + +L + + ++ + C + + Sbjct: 99 RLVILDEADNFHGNADYGGSAEVTRVVKDANQPIVLVANEFYDMSQSLRNSCETIEFRDV 158 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 I L I E + E AL+ +A G LR A++ QA+A +++ + V Sbjct: 159 SKRSIVPVLRDICRREDVEFEEEALEKIAEDTSGDLRSAVNDL-QAVAEEAERLTVEDV- 216 Query: 239 AMLGTLD-DDQALSLVEA-MVEANGERVMALINEAAARGIEWEALLVE 284 + G D + ++A + E + E + + E + + Sbjct: 217 -VTGQRDTTEGIFDFLDALIKEEDAEGALRASYDVDENPDEMLNWIED 263 >UniRef50_C5NXY2 Replication-associated recombination protein A n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXY2_9BACL Length = 415 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 63/410 (15%), Positives = 131/410 (31%), Gaps = 64/410 (15%) Query: 6 LARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 L K RP D++GQ H++ L + ++ +++ G G GKTSIA LA L Sbjct: 4 LINKLRPSKIDDIIGQHHLIGDGKVLTKIVESKKMF-SFILYGPPGTGKTSIANALANEL 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 + + +I A +D +++ R + + Sbjct: 63 DYK-------------------------FKILNAVNCTKKDLTAVIEE----SKRFKKVI 93 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 L+DE H L++ + LL +E +V + I SR + F L+ + + Sbjct: 94 LLLDEFHRLTKPMQDILLPEIEFDNIYVIGCTTNNPYHTVNPAIRSRLIIFELQQVSNDD 153 Query: 183 IRHQLEHILNEEHIA-----HEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVSTQ 235 I L+ I N + I E + +A + G LR +L+ + +++ ++ Sbjct: 154 IYEYLKKISNNKEIFPKDLKIEDDVFKTIALNSSGDLRFSLNTFEILYNLSNEGEIITKD 213 Query: 236 AVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + + G D + +++ ++ + + + G + + + M Sbjct: 214 KLLNLSLGKFKAYDKDGDAFYDIISAFQKSIRGSDVDASLYYLALLIDSG-DLDTIYRRM 272 Query: 286 -LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD--IQLYYQT--------LLI 334 + I + + + + IP + IQL + Sbjct: 273 SVIAYEDIGLANPNIGPFVHAAIESAKMLGLPEARIPLANAVIQLALSLKSNSAYMAIDN 332 Query: 335 GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVM 384 E + + + L A + P Sbjct: 333 ALHETKT--NPKFIIPDHLRDAHYYGADKLNRGVGYQYPHSHPTGYIKQQ 380 >UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6Q7_9ACTN Length = 454 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 111/356 (31%), Gaps = 72/356 (20%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP + + VGQ+ + + L + + L G G GKT++A ++A Sbjct: 23 PLAVRMRPNSLDEYVGQQKAVGKGSWLRAAIEHDVLSSVIL-YGPAGTGKTTLAHIIANH 81 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 E + A V+D R ++D + R Sbjct: 82 TKSEFVEVS-------------------------AVTGTVKDLRRVIDEAKTRLNTYDRR 116 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H S+ +ALL +E + ++ +LSR L+ L Sbjct: 117 TILFIDEIHRFSKSQQDALLHAVENRTVIMIGATTENPYFEVNSALLSRGRVVELEHLKD 176 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTDQA----------- 224 E I +E L + + + + A G R AL+ + A Sbjct: 177 EDIATLIERALEAPQGLNGKFSADEDTAKTICTLAAGDARSALTTLELASEIAVTRPDTE 236 Query: 225 -----IASGDGQVSTQAVS----------AMLGTLDDDQALSLVEAMVEANGERVMALIN 269 A ++ V G + D + +++M ++ + + + Sbjct: 237 GTPAPAAGERYPITVDDVKIANPRRGFTYDKNGDMHYDIISAFIKSMRGSDPDATVYWLA 296 Query: 270 EAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 G + + + ++ A+ A + + A I Sbjct: 297 RMIDAGEDPKFIARRIMIH-----------ASEDVGNADPQALLVAHAAFKSAEVI 341 >UniRef50_UPI0001C3744E recombination factor protein RarA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3744E Length = 423 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 132/356 (37%), Gaps = 52/356 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS LA K RP+T ADVVGQEH+L L + G + + +F G GVGKT++AR+ Sbjct: 1 MSA-PLADKIRPKTLADVVGQEHILADGKPLRRIIDSGTVPN-MIFYGPSGVGKTTVARI 58 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 +A CG + + + D +D++ ++ + Sbjct: 59 IA-----------ENCG--------------MSLYKLNGTNASISDIKDVVADIGTFGSE 93 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 + +DE+ L++ +LL+ +E + + ++SR F K Sbjct: 94 NGI-LLYLDEIQYLNKKQQQSLLEYIENGDITLIASTTENPYFSVYNAVISRSTVFEFKP 152 Query: 178 LDVEQIRHQLE---HILNEEH---IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG- 230 + EQ+ + I++EE+ + ++ +A + G +R A++ + A+ G+ Sbjct: 153 VSAEQLMPAIRRAFRIMSEENGYAVEASDDIIKQIAYSCGGDVRKAMNTAELAVVCGEAS 212 Query: 231 ----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 V+ ++ + G D +L +++ ++ + G Sbjct: 213 DGKVAVTADSLKILAQRSNMRYDRDGDQHYDILSALQKSIRGSDENAALHYAARLIEAGD 272 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ I + A+ L++ IP + + T Sbjct: 273 IISLSRRLLVIAAEDIGLAYPQAIAITKACVDSALQLGLPEARIPLAEAIILLATA 328 >UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actinobacteridae RepID=C8XD35_NAKMY Length = 494 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 107/319 (33%), Gaps = 59/319 (18%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+T +VVGQ+H+L L + G + L G G GKT++A L+A Sbjct: 40 HAPLAARMRPRTLDEVVGQQHLLGPGAPLRRLVQGG-APSSMLLYGPPGTGKTTLATLVA 98 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARG 118 G +A V++ R ++ G Sbjct: 99 -------------------------GSTGRFFAQLSAVSAGVKEVRAVIAEATTRLRRTG 133 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 V IDEVH SR ++LL +E+ + + +LSR L L+ L Sbjct: 134 EQTVLFIDEVHRFSRTQQDSLLGAVEDRTIVLVAATTENPFFSVVSPLLSRSLILQLQPL 193 Query: 179 DVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 I ++ + +E A L A G R AL+ + + S Sbjct: 194 TDTDISELIDRAVADERGLAGAFTLAEPARAHLVALAGGDARRALTALEASAESVRELDA 253 Query: 231 -----------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALIN 269 ++ AV + G D + ++++ ++ + + + Sbjct: 254 PDSDDDPAGVLEIDLDAVERAVNRAAVRYDRSGDQHYDVTSAFIKSIRGSDVDAALHYLA 313 Query: 270 EAAARGIEWEALLVEMLGL 288 G + + ++ Sbjct: 314 RMIEAGEDPRFIARRLMVH 332 >UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase interacting protein n=1 Tax=Tribolium castaneum RepID=UPI0000D57862 Length = 494 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 111/311 (35%), Gaps = 49/311 (15%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA++ +P+ D +GQ HVL T L L G I + L G G GKTS++ ++ +G Sbjct: 93 PLAKQLQPKCLDDFMGQSHVLGENTVLRTLLEKGDIPNMVL-WGPPGCGKTSLSGVI-QG 150 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + +C A+ V+D ++++ + G Sbjct: 151 ICKSNPTKLKFVSLC-------------------AATAGVKDVQNIVSAAKLQQKFGCRT 191 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +DE+H ++ + L +E+ + + +LSRC L+ LD + Sbjct: 192 VLFMDEIHRFNKKQQDIFLLHVEKGDIILVGATTENPSFTVNSALLSRCRVIVLQKLDPD 251 Query: 182 QIRHQLEHILNEEHIAHEP------------RALQLLARAAEGSLRDALSLTDQAIASGD 229 + LE ++ AL+ LA ++G R AL + + Sbjct: 252 CLYQILERGARNFNVEVVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNE 311 Query: 230 GQ---VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 + V+ + + + G + ++ +++ ++ + G Sbjct: 312 DKNKVVTIEDIKEKIKKSHLLYDRKGEEHYNVISAMHKSIRGSDPNAALYWTTRMIVSGE 371 Query: 277 EWEALLVEMLG 287 + + M+ Sbjct: 372 DPLYIARRMVR 382 >UniRef50_C4V9I1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9I1_NOSCE Length = 352 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 116/304 (38%), Gaps = 22/304 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K++P+ F + +++ L I H +F G G GK IA L K L + Sbjct: 3 WLEKYKPRDFNSMTDHTEIISILQKYNIHN-IPH-LIFHGKSGSGKKLIAYNLIKHLFGQ 60 Query: 66 TGITATPCGVCDNCREIEQGRF---VDLIEIDAASRTKVED--TRDLLDN-VQYAPARGR 119 + + + F + IEI + + + ++ Q P Sbjct: 61 ISVPNVRTSEVKAGSRMIEVNFLEANEFIEISPSDYNFQDKVIIQSIIKEMAQSRPVMSF 120 Query: 120 F--------KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 F K +I H LS + AL +T+E E + +L + K+ I SRC+ Sbjct: 121 FSTKKTPSIKFVIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIEPIRSRCV 180 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 ++ ++I++ +++I+ E+I + ++ + + ++G++R AL L + + Sbjct: 181 FVRIRGFKPQEIKNHIKNIVTAENININEQNIEQIIKISDGNMRRALGLLEILYLKHSEE 240 Query: 232 VSTQAVSAMLGTLDD-----DQALSLVEAMVEAN-GERVMALINEAAARGIEWEALLVEM 285 V+ + + + D+ +LV + V + I +L+E+ Sbjct: 241 VNKRLKLDLNHVKLEWEVVMDEISALVRRSHKTETIIEVRKKLYVLINSCITAHCILMEL 300 Query: 286 LGLL 289 Sbjct: 301 YKRF 304 >UniRef50_B8KQW7 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KQW7_9GAMM Length = 321 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 99/281 (35%), Gaps = 25/281 (8%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F + + ++ + RI HA + G G G+ +A LA L C A CG Sbjct: 10 FEALPWHHDTVASVYHDSEQDRIPHALMLVGAPGTGRRQLAWSLAAMLLCSRPSVAGGCG 69 Query: 75 VCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CD CR+ G D ++ ++ R + +Q A G KV +I + Sbjct: 70 TCDVCRQFMSGAHGDSRWLEPEPEKRAIGIDQVRGAVQFLQQTAAYGGRKVLVIAPADAM 129 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP LL + ++LP T+ SRC + L EQ L+ ++ Sbjct: 130 TSAAANALLKTLEEPAGDSVMLLVSDYGERLPATVRSRCQRRVLSHPSREQGLTWLKSVV 189 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 G L L ++ V L + Sbjct: 190 EP-----------------AGDYSAVLDLVQDCPLEARRLINDDEVDGFLSL--QESIRG 230 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 L++ V + + A G + EM L + Sbjct: 231 LLD---GKVAATVASSLLGRAEPGRALRLICGEMDRRLRLL 268 >UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepID=Q1QXX6_CHRSD Length = 469 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 121/309 (39%), Gaps = 51/309 (16%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ D VGQE ++ L G + + + G GVGKT++A +LA Sbjct: 38 PLAYRMRPRRLDDYVGQEALVGPGKPLRRMAESGAV-RSMILWGPPGVGKTTLADILADA 96 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 ++E +A V+D R ++ + RG+ Sbjct: 97 -------------------------SGAMLERLSAVMAGVKDIRAAVERAREGQVRGQPT 131 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H L++ +ALL +E + ++ +LSR + L+ L+ E Sbjct: 132 LLFLDEIHRLNKSQQDALLPHVESGLLTLIGATTENPSFEVNSALLSRARVYVLRKLETE 191 Query: 182 QIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-----GD 229 + L L + HI + L+ LAR+A G R AL L + A G Sbjct: 192 DLLRVLHQALADTERGLGKRHIEADEGVLETLARSASGDARRALGLLETACDFAEPTEGG 251 Query: 230 GQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 +++ QA+ +LG D ++ +++ + + + I + G + Sbjct: 252 ERLTLQALHEVLGHQASAFDKQGDHYYDLLSAIHKSIRSSRPDAALLYIAQFTQGGGDPL 311 Query: 280 ALLVEMLGL 288 ++ + + Sbjct: 312 DVVRRLAAI 320 >UniRef50_C6A0M4 Replication factor C small subunit n=2 Tax=Euryarchaeota RepID=C6A0M4_THESM Length = 766 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 107/241 (44%), Gaps = 5/241 (2%) Query: 96 ASRTKVEDTRD-LLDNVQYAPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 + + R+ + + + P G FK+ +DE L++ + AL +T+E +V+F+ Sbjct: 524 SDERGINVIREKVKEFARTKPIGGVSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFI 583 Query: 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 L+ K+ I SRC F + L E + +L++I E + LQ + AEG Sbjct: 584 LSCNYSSKIIEPIQSRCAIFRFRPLKDEDVARRLKYIAENEGLELTEEGLQAILYVAEGD 643 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE-AA 272 LR A+++ QA A+ D +++ + V + + ++ +E N + + E Sbjct: 644 LRRAINVL-QAAAALDTRITDENVFLVASRARPEDVREMMLLALEGNFLKARDKLREILL 702 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA-RTIPPTDIQLYYQT 331 +G+ E +L++M + + + + AL + + R+ E + I + + Sbjct: 703 KQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVEGSNEMIQLEALLAQFTL 762 Query: 332 L 332 L Sbjct: 763 L 763 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + K+RP+ D+VGQ+H++ L + + + H LF+G G GKT+ + LA+ L Sbjct: 16 KPWVEKYRPERLDDIVGQDHIVKRLKHYVKTASMPH-LLFAGPPGTGKTTSSLALARELF 74 Query: 64 CETGITA 70 E Sbjct: 75 GEHWRHN 81 >UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A039 Length = 672 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 115/331 (34%), Gaps = 69/331 (20%) Query: 3 YQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 ++ LA + RP T ++GQ L L L +G I + +F G G GKTS+A ++A Sbjct: 269 FRPLAERMRPYTMDTLIGQNKALGATGTLRRLLDVGNIP-SMIFWGPPGCGKTSLANVIA 327 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 + + R +A+ + V D + ++ + R Sbjct: 328 RQ---------------------AKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYR 366 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K + IDE+H ++ + L +E + ++ +LSRC L+ L Sbjct: 367 RKTILFIDEIHRFNKTQQDTFLLHVENGTIILIGATTENPSFRVNSALLSRCRVVVLEKL 426 Query: 179 DVEQIRHQLEHILNE-----EH------------IAHEPRALQLLARAAEGSLRDALSLT 221 E I LE L E E+ I+ E AL LLA +G R AL+ Sbjct: 427 SPESIMLILERALKEGQVGIENAEHLHKTCWSTTISIEREALCLLANLCDGDARSALNSL 486 Query: 222 DQAIASGDG----------------QVSTQAVSAML----------GTLDDDQALSLVEA 255 + G ++ + L G + A +L ++ Sbjct: 487 QMVLDVAKGSTGGQQADASKVLRSSVITIDQIRDSLQRSHISYDKSGEEHYNCASALQKS 546 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEML 286 + ++ + + G + + ++ Sbjct: 547 IRASDANAAVYWLGRMLVGGEDPLYIARRLV 577 >UniRef50_Q8QN66 EsV-1-224 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QN66_ESV1 Length = 324 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 89/264 (33%), Gaps = 27/264 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 K RP DV G +HV+ AL + S+ + + G G GKTS +AK Sbjct: 2 VSWTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPN-MILHGPPGSGKTSSIISMAKSFF 60 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF--- 120 T + +E++A + RD + + Sbjct: 61 GRT------------------NISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTN 102 Query: 121 --KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K+ ++DE L+ + AL +E +F L +L + SRC F + Sbjct: 103 ALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGI 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV---STQ 235 Q+ H L + +E + L + + G R ++L + Q Sbjct: 163 GNVQLAHTLREVARKEDLEISEEGLNAVVKVCAGDARQGINLLQSLSLGDATTLVVRDDQ 222 Query: 236 AVSAMLGTLDDDQALSLVEAMVEA 259 AV A G Q + E ++ Sbjct: 223 AVYATCGLPSPSQTSEIFEVLLNQ 246 >UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Tax=Bacteria RepID=C0X719_ENTFA Length = 425 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 74/459 (16%), Positives = 137/459 (29%), Gaps = 63/459 (13%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 Q LA + RP+ +VVGQ+H++ + + + + + G G GKTSIA +A Sbjct: 2 QQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLS-SMILYGPPGTGKTSIASAIA 60 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 ++AA+ TK + L V Sbjct: 61 ------------------------GSTNYAFRMLNAATDTKKD-----LQIVAEEAKMSG 91 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + L+DE+H L + + LL LE + + I SR F +K L Sbjct: 92 TVILLLDEIHRLDKTKQDFLLPHLENGRIIMIGATTENPYITINPAIRSRTQIFEVKPLT 151 Query: 180 VEQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-- 230 I+ ++ L + + E +ALQ L RA G LR AL+ + A+ S Sbjct: 152 ETDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNE 211 Query: 231 ----QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGI 276 +++ + + G D + +++ ++ + + + G Sbjct: 212 QGEIKITLPIIEECVQRKALTHDKDGDAHYDVISAFQKSIRGSDVDAALHYLGRLVEAGD 271 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 M+ I + + AA ++ IP + L Sbjct: 272 LPIICRRLMVIAYEDIGLGNPAAAARTVTAVQAAEKLGFPEARIPLASVV--IDLCLS-- 327 Query: 337 KELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 P + ++ L + A + + Sbjct: 328 ---PKSNSAVTAIDAALADIRQGSVGDVPDHLRDAHYAGAKELNRGIGYQYPHNFENGWV 384 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAA 435 QQ L E + ++ + E Sbjct: 385 NQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQEWKQ 423 >UniRef50_C5DIS0 KLTH0E14696p n=2 Tax=Saccharomycetales RepID=C5DIS0_LACTC Length = 384 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 38/344 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANG-LSLGRIHHAYLFSGTRGVGKTSIARLLA 59 MS + K+RP++ + + L + + + H LF G G GK + L Sbjct: 27 MS--LWVDKYRPKSLDALTHTPRLTHLLKSLSVEPRDLPH-LLFYGPNGAGKKTRCMALL 83 Query: 60 KGLNCETGITATPCGV---CDNCREIEQG--RFVDLIEIDAASRTKVE--DTRDLLDNVQ 112 + + + R++E +EI + + ++LL V Sbjct: 84 QSIFGSGVYKLKIDVRQFTTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 143 Query: 113 YAPAR--------------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 R+K +I+E L+R + AL +T+E+ +++F++ Sbjct: 144 QMEQVDFQTASGAETGGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSRNIRFIMLCES 203 Query: 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDA 217 + I SRCL A ++ L + +E + E A L +A + +G+LR A Sbjct: 204 MSSMIAPIKSRCLLVRTPAPTTQETADALVKVGGQEKVTVEDEAILNTIAESCDGNLRKA 263 Query: 218 LSLTDQAIASGD-------GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 L + + + + V +L + V ++V A + + Sbjct: 264 LLTFESMALNNEMCLKSSTALIRADWVVVILKMANRILKDRSVSSLV-----ECRATLYD 318 Query: 271 AAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A I + ++ E+ L A+ + + R+R Sbjct: 319 LLAHCIPAKVIIQELAFALLDAIHNDNHKIAVVQWASVFDERLR 362 >UniRef50_B5JVJ6 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVJ6_9GAMM Length = 343 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 77/374 (20%), Positives = 126/374 (33%), Gaps = 43/374 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS Q +P ++ ++A GR+ HA L G GVGK AR LA+ Sbjct: 1 MSDQESVFDLQPLSW-----HTPHWQSVAEQREQGRLPHALLLQGAAGVGKGLFARQLAR 55 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA--------ASRTKVEDTRDLLDNVQ 112 GL C+ CG C +C G+ D E+ + +V+ R L D++ Sbjct: 56 GLLCQNAAGVAACGQCQDCHLSAIGQHPDWHEVTFERTKEGKLSREIRVDQIRALSDSLS 115 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 KV +I H ++ ++ N++LKTLEEP LL T P +L TI SRC Sbjct: 116 LKSHSAGGKVAVIYPAHKMNVNAANSVLKTLEEPSADTFLLLVTDAPSRLLPTIRSRCQS 175 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 +Q L ++ ++ Q L + G+ A ++ Sbjct: 176 IRFDVPSADQAEQWLASVVA-------DQSPQALLAMSGGAPLLARQAAEEGWLDERETW 228 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 Q + G L+ + AA + +L + + Sbjct: 229 FEQLLDIARGKLNP------------------VDAAAAAAGMEVAASRVLEWTVSFCSDL 270 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTI---PPTDIQLYYQTLLIG-RKELPYAPDRRMG 348 + + + LA P + + LL R + + + Sbjct: 271 IRLVQKVPDSVQ-NKDHQSTLAALAEHRFANSPQPLYRWCDDLLKAGRYAESASLNAQQL 329 Query: 349 VEMTLLRALAFHPR 362 E LL+ R Sbjct: 330 FEDVLLQWQDIQHR 343 >UniRef50_A1U0Y9 DNA polymerase III, delta prime subunit n=3 Tax=Marinobacter RepID=A1U0Y9_MARAV Length = 343 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 114/356 (32%), Gaps = 32/356 (8%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---- 71 D+ + + L+ R+ HA L G +GVGK + A +A L C+ + Sbjct: 6 KDMPWLGRAWSTVQQRLAQDRLPHALLVVGEQGVGKRAWAEAVAGLLLCDQQVGLDDGAP 65 Query: 72 -PCGVCDNCREIEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C C+ I D+ KV+ R L +P KV ++D Sbjct: 66 IACGQCRQCQLIAANSHPDVRVYSPEKSRMVKVDQIRALSTFAVASPQVAHRKVAIVDRA 125 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ ++ NALLKTLEEP V LL + + TI SRC + D E L Sbjct: 126 DQLNINAANALLKTLEEPLPDVTLLLLQESGRPVLPTIRSRCQALTIPLPDAEDAGRWLS 185 Query: 189 HILN--EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDD 246 ++ EE I P L A + R AL + Sbjct: 186 ARVSELEESIRPSPDTLAKSLMLAGNAPRLALEYATGEFLAQR----------------- 228 Query: 247 DQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDM 306 D+A ++ V G++ L E +A Sbjct: 229 DEAFEAFRQFMKGQM-TVGDAARRFKTLGLDDTLWLFE--SWAADLARCSAGGEVQD--- 282 Query: 307 AAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + LAR PP + + R Y + LL PR Sbjct: 283 PEAADMLGYLARANPPWRAHQLMERVRESRSAGIYNASPELEATQLLLAWRELMPR 338 >UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Thermotogaceae RepID=A6LJD0_THEM4 Length = 410 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 132/394 (33%), Gaps = 64/394 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHV---LTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 MS L+ RP+ F + +GQEH+ + + G + A F G G GKTS + Sbjct: 1 MSG--LSEILRPKGFEEFIGQEHLFGEKGLIRLAIESGNLFSAV-FYGPPGCGKTSTLEI 57 Query: 58 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 + K ++ +AA + ++ + +LD Q + Sbjct: 58 IRK------------------------KTDFEIYHFNAAVTSTID-VKKVLDYAQK--VK 90 Query: 118 GRFKVYL-IDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G K+ + +DE+H ++ + L +E + + +LSR K Sbjct: 91 GLKKMLIFVDEIHRFNKKQQDIFLPGIERGDYIFIGATTENPFKMINPALLSRIKVIAFK 150 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL---TDQAIASGDGQVS 233 L V +I+ LE ++ ++I + + R ++G R A+++ + ++ Sbjct: 151 KLKVFEIKKLLERAISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDMAKALGKEIV 210 Query: 234 TQAVSAMLG---------TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + + G + A + ++++ ++ + + + G + + Sbjct: 211 DDEIVTLYGGEVKMVYTSKEHYELASAFIKSIRGSDPDAALYYMARMLEVGEDPRFIARR 270 Query: 285 MLGLL---------HRIAMVQLSPAALGND-------MAAIELRMRELARTIPPTDIQLY 328 + L I + + A+ + + LA + + Sbjct: 271 LAILASEDVGLADPMAILIAIATAQAVELVGLPECVLNLSECVIYLSLAPKSNSSTL-AI 329 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + R+ + + + + H Sbjct: 330 SKAIESARETMNLSV-PFNLLNVKDSGYKNPHHY 362 >UniRef50_A8MD97 AAA ATPase central domain protein n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MD97_CALMQ Length = 418 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 116/297 (39%), Gaps = 38/297 (12%) Query: 1 MSYQ--VLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIA 55 MS + K+RP++ D+V QE V + + +S G+ A L SG G GKT++ Sbjct: 1 MSTRRLPWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMV 60 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LA ++L E++A+ R+ + Sbjct: 61 HALA------------------------YDYGLELYEMNASDVRTASRIRETIGKALTQG 96 Query: 116 ARGRF--KVYLIDEVHMLSRHSFNALLKTLEEPPE--HVKFLLATTDP-QKLPVTILSRC 170 + F K+ L DEV ++ + + + + + V + DP + C Sbjct: 97 SLFGFRGKLVLFDEVDGINVRADQGGIYEIVDIVKEAKVPIAMTANDPWDPKLRPLRDIC 156 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 + +K L I L I N E + E AL+L+A ++ G +R A++ + G Sbjct: 157 VVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTV--AETG 214 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 V+ + VS + +V+ +++AN + + +WE+ L+ ++ Sbjct: 215 PVTRERVSLLSSRAHQYDMFRMVDMVLKANTVASATGVTRLPS--FDWESFLLWLVE 269 >UniRef50_O29072 Replication factor C large subunit n=1 Tax=Archaeoglobus fulgidus RepID=RFCL_ARCFU Length = 479 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 21/284 (7%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP+T +VV + ++T + R L +G GVGKTS+A LA + Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKPLLLAGPPGVGKTSLALALANTMGW 62 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 124 E + R IE+ I + A + D + L + G+ K+ + Sbjct: 63 EAVELNASDQR--SWRVIER------IVGEGAFNETISDEGEFL-----SSRIGKLKLII 109 Query: 125 IDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +DEV + + AL++ ++ P +L DP KL + + C + K L Sbjct: 110 LDEVDNIHKKEDVGGEAALIRLIKRKPAQP-LILIANDPYKLSPELRNLCEMINFKRLTK 168 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 +Q+ LE I +E I + L +A A G LR A++ QA+A G ++ + V + Sbjct: 169 QQVARVLERIALKEGIKVDKSVLLKIAENAGGDLRAAINDF-QALAEGKEELKPEDVF-L 226 Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + +++ + + V + + E Sbjct: 227 TKRTQEKDIFRVMQMIFKTKNPAVYNEAMLLDESPEDVIHWVDE 270 >UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U314_PHYPA Length = 498 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 117/331 (35%), Gaps = 70/331 (21%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S + LA + RP + VVGQ+H+L L N + + + +F G G GKTS+ + + Sbjct: 76 SLEPLAERMRPASVDLVVGQDHLLGPRCMLRNLIDANSLS-SIIFWGPPGTGKTSLVQTI 134 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A+ + +A + +++ R+ L+ + G Sbjct: 135 ARAV-------------------------SYRFVALSAVSSGLKEVRETLEEAKRLQKFG 169 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + L+DE+H ++ + L +E + ++ +LSRC L L Sbjct: 170 ERTLLLLDEIHRFNKAQLDVFLPCVEAGHIVLIGATTENPSFEINAALLSRCKVLTLNKL 229 Query: 179 DVEQIRHQLEH-ILNEEH--------------IAHEPRALQLLARAAEGSLRDALSLTDQ 223 + IR L+ I ++E I E AL+ LA AA+G R AL+ + Sbjct: 230 QPDHIRSLLDRAISDKEKGLMVSLAGSAAEDVIKVEQDALEFLADAADGDARVALNTLEL 289 Query: 224 AIASG--------DGQVSTQAVSAML------------------GTLDDDQALSLVEAMV 257 A + S S +L G + +L+++M Sbjct: 290 AGLAAFASWESTPRRPCSADKASTILADANAKAIQRSYFLFDKSGEEHYNIVSALIKSMR 349 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGL 288 + + + + G + ++ Sbjct: 350 GGDPDAAIYWLARMLEGGEGPLYIARRLIRF 380 >UniRef50_D0LEI8 DNA polymerase III, delta prime subunit n=3 Tax=Actinomycetales RepID=D0LEI8_GORB4 Length = 431 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 121/368 (32%), Gaps = 50/368 (13%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-CGVCDNCREIEQGRFVD 89 S + H++LF+G G G++ A A L C+ A CG C C + G D Sbjct: 56 AASRASMTHSWLFTGPPGSGRSVAATCFAAALQCQADDPADIGCGQCRACVTVMAGTHAD 115 Query: 90 LIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 + I V+ R+++ P GR+++ ++++ L+ + NALLK +EEPP Sbjct: 116 VRSIAPDGLTLSVKSMREIVQTASRRPGTGRWQIVIVEDADRLTEQAANALLKVVEEPPS 175 Query: 149 HVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 FLL DP + VT+ SRC L + V I L +P Sbjct: 176 RTVFLLCAPSVDPDDISVTLRSRCRHVALTSPSVADIERVLVDR-----DGIDPAQAAWA 230 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM-LGTLDDDQALSLVEAMVE------- 258 A G + A L A A +++ + A + + A LV Sbjct: 231 ASVCGGHIGRARRLATDADAREQREMALRLARAATVDSTAYKAAEELVRTAEAASKAIAA 290 Query: 259 ---------------------------ANGERVMALINEAAARGIE------WEALLVEM 285 + + + + LV++ Sbjct: 291 ELNEPELEEMKTALGAGGTGKGTARAPRGSAGAIKELEKRQKSRETRVGRDVLDRALVDL 350 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 L +V + + + +A P + + +L R+ L Sbjct: 351 AALFRDALVVGVGAQVTPMHPDKADDVVIPMAGFARPEQLLQCVEAVLACREALDVNVKP 410 Query: 346 RMGVEMTL 353 + V+ + Sbjct: 411 KFAVDAMV 418 >UniRef50_B4S1N1 DNA polymerase III subunit delta n=2 Tax=Alteromonas macleodii RepID=B4S1N1_ALTMD Length = 295 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 98/259 (37%), Gaps = 25/259 (9%) Query: 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 L + ++HH L +G G+GK +A L+ L C+ PC C +C + G Sbjct: 14 LISRYLAKKLHHGLLLTGVSGIGKNQLALGLSNTLLCKHPSVDGPCEQCQSCHLRQAGNH 73 Query: 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP 147 D +++ + V+ R+ + + G KV LI + ++ + NALLKTLEEP Sbjct: 74 PDFHILESEKQLGVDKIREGIAKLSGTAQMGGNKVLLIPKADTMTEAAANALLKTLEEPT 133 Query: 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 + LL T KL TILSRC + L V + + L + + AL Sbjct: 134 NNTFLLLITDSVNKLMPTILSRCERQVLSLPSVSESLNYL----KAKGVEDASDAL---- 185 Query: 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE-RVMA 266 A G + + + L ++A++ + + Sbjct: 186 ----------------LAAYGYAPLRVEEALSGDDDLSYRHFSDGMQALLAGDANVQAQT 229 Query: 267 LINEAAARGIEWEALLVEM 285 L N+ + ++ Sbjct: 230 LANKWQDNAQQIALWCQQL 248 >UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacteria RepID=A7NI76_ROSCS Length = 544 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 72/535 (13%), Positives = 150/535 (28%), Gaps = 57/535 (10%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+ + VGQ+H++ L ++ + + + G G GKT++AR++A Sbjct: 22 PLAARMRPRALDEFVGQDHIVGEGKLLRRAITNDALF-SIILWGPPGSGKTTLARIIA-- 78 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 E +A V D R ++ Q + Sbjct: 79 -----------------------DTTHAHFEQLSAVSAGVADLRRVVKEAQDRLGMFQQR 115 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + IDE+H ++ +A+L +E+ + ++ + SR F L++L Sbjct: 116 TIVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVNPALRSRARVFVLESLTD 175 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS------ 227 EQI ++ L ++ A L + G R AL+ + A + Sbjct: 176 EQIGVIVDRALTDAERGLGALNVLLAADARGYLINMSNGDARTALNALEAAALAKSPGIG 235 Query: 228 GDGQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIE 277 G ++ + L G L D +L +++ +++ + + + G + Sbjct: 236 GKRLLTVDDIRDALQSRAVQYDKNGELHYDAISALHKSVRDSDPDAALYWLGRMLDGGED 295 Query: 278 WEALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 + ++ + + I M L + + + +Y Sbjct: 296 PLYIARRVVRMAIEDIGMADPHALPLTIAAQQAVHFLGQPEGDLALAQAVVYLAQAPKSN 355 Query: 337 KELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSA 396 V T + H R Q + + Sbjct: 356 AVYVAYAAALNDVAETRNEPVPLHLRNAPTALMKRLGYARGYKYAHDDDDAQAETRNEPV 415 Query: 397 PQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRAR---PVNNAALERLASV 453 P P A + + ++ R R E Sbjct: 416 PLHLRNAPTALMKRLGYARGYKYAHDDDDAQVEQEHFPPNLRGRRYYEPTGRGFEATVRE 475 Query: 454 TDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE 508 + K +++E R + + + E Sbjct: 476 RLAWRDARASHGTAKGVSREERTRSATGQNHTPSDLDPQALAGEEPQIPADDVAE 530 >UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopobium RepID=C8W9U5_ATOPD Length = 443 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 117/351 (33%), Gaps = 66/351 (18%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP T VGQE + + L + + + L G G GKT++AR++A Sbjct: 18 PLAARMRPTTLDGYVGQEDAVGPGSWLRKAIEHDTLS-SVLLYGPAGTGKTTLARIIAHT 76 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + +E+ A + T + R++ GR Sbjct: 77 ------------------------THAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRT 112 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + IDE+H +R +ALL +E+ + ++ ++SR L AL Sbjct: 113 ILFIDEIHRFTRSQQDALLHAVEDRIVVLIGATTENPYFEVNSALISRSRVVELHALSDN 172 Query: 182 QIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAI----------- 225 I ++ L E E A + + A G R AL+ + A Sbjct: 173 AIDELIQRALESEDGLAGAFVLEEDARKEIVTLAGGDGRAALTSLELASQMVDVPESADG 232 Query: 226 -ASGDGQVSTQAVSAM----------LGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 AS ++ Q V G + D + +++M ++ + + + Sbjct: 233 KASEPLVITKQNVLEANPRRGLPYDKAGDMHYDIISAFIKSMRGSDPDAALYWLARMIDA 292 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDI 325 G + + + ++ L A+ A + + A I Sbjct: 293 GEDPKFIARRIMIL-----------ASEDIGNADPQALLIAHAAFRSAEVI 332 >UniRef50_C9LL87 Putative DNA polymerase III n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL87_9FIRM Length = 342 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 62/357 (17%), Positives = 124/357 (34%), Gaps = 25/357 (7%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 Q V GQE + L + R+ H +F G G+GKT+ A A L + Sbjct: 3 QFLTHVYGQEKLKRELKLLMENHRLPHTMIFYGDDGLGKTTAAFDFADFLTGASEKIWVE 62 Query: 73 CGVCDN---CREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 + + +E + + I K++ R ++ A + +V +ID+ Sbjct: 63 IKKIKSSKNEKLLENLKGDRVWYIRPMGMELKIDQFRAFMEE--MASFDEKLRVCIIDDA 120 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 +++++ N+ LKTLEEP E++ F+L T+D L TI+SR +F L + + +E Sbjct: 121 QKMNQYAANSFLKTLEEPVENLYFILVTSDINALLPTIVSRGERFPFFPLMENEFYYLVE 180 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 + E + + + +EG+ A L + G + D Sbjct: 181 TVAEEFNFDGTVGK-ETAFKVSEGNPGVAKDLCGEK-----------------GMMQLDV 222 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 A+ E + ++ ++ LL ++ + + + + Sbjct: 223 AMRFWETVTTSSTAFSSLSAWTF-KEREDFLVLLRWVIIIGRDLMIGAETTDDQLEKCMQ 281 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 R + L + L + +M L++ + Sbjct: 282 WSDREKRLLKYWTDGRAIEALAVLQKAESACRRYISTKNIWDMILIQLQHIQKGDYI 338 >UniRef50_D2BNT0 DNA polymerase III, delta prime subunit n=4 Tax=Lactococcus lactis RepID=D2BNT0_LACLK Length = 286 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 76/287 (26%), Positives = 117/287 (40%), Gaps = 14/287 (4%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 D+ Q + + L G++ HAYLFSG G G +A L++ L CE + P Sbjct: 1 MEIKDI--QPQLYKQFSTILQHGKLSHAYLFSG--GFGSFELAIWLSQALFCENPENSLP 56 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 CG C +CR + Q F DL ++ + K R+L + G+ +V LI E + Sbjct: 57 CGHCRSCRLVAQQEFTDLHIVEPDGQTIKTAQIRELTQVFNESGYEGKQQVILIKEAEKM 116 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ NALLK++EEP + L T + + TI SR + L+ L Sbjct: 117 HPNAANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINFPK-----NVQYLQDFL 171 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 + I L LA S AL L Q+ + Q Q V +L T D+ L Sbjct: 172 EKNGILKTQAEL--LAEICN-STDKALELAQQSWFNEGLQRLQQFV-KLLKTSADEAFLY 227 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS 298 L E + + + E + E + E+L I M + + Sbjct: 228 LKELVEIFDDKEKQNQAFELLLQLFNQERMSQELLKTFQAIKMWKSN 274 >UniRef50_A2QW62 Function: WHIP of M. musculus is involved in aging control n=3 Tax=Aspergillus RepID=A2QW62_ASPNC Length = 513 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 104/303 (34%), Gaps = 48/303 (15%) Query: 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 + LA + RP+ F D+VGQ+ ++ L + + + + G G GKT+IAR++ Sbjct: 103 HAPLAEQVRPRCFDDIVGQKSLIGPNGTLRRLIEQDELPN-LILWGPPGSGKTTIARII- 160 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G + + +S T + + D V A GR Sbjct: 161 -------------------------GPMMRRKVYEISSLTTITT--EYRDIVTKATHDGR 193 Query: 120 FK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 K + DE+H L+R + L + + + T++ +C F + Sbjct: 194 NKSIIFCDEIHRLTRPQQDIFLDAMRRNKITLIGATTENPSLNIHHTLVYKCRVFTVAKP 253 Query: 179 DVEQIRHQLEHILN-----EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-- 231 + L L + + LQ +A A+G R AL++ + A Sbjct: 254 TTTDLATILRRSLISQTHLKSSPLLDDEFLQYIAGFADGDSRTALNVLEIATDLCRRPNM 313 Query: 232 --------VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 ++ + G D +L +++ ++ + + + G + Sbjct: 314 TKEKLKYSLTKSLLYDRSGDQHYDTISALHKSIRGSDPDAALYYLVRMLQSGENPLFIAR 373 Query: 284 EML 286 ++ Sbjct: 374 RLI 376 >UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusimicrobia RepID=B2KBM0_ELUMP Length = 416 Score = 142 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 65/416 (15%), Positives = 126/416 (30%), Gaps = 61/416 (14%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA P+ D GQ+HV+ L + I A F G GVGKT++AR +A Sbjct: 9 PLAAAMAPKNLDDFAGQKHVIGPGRMLRRMIESDTIKSAV-FFGPPGVGKTALARFIA-- 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA---PARG 118 +E++AA V D + +++ + Sbjct: 66 ----------------------SKTEAVTVELNAA-AAGVGDIKKVIEEAKERRNDTFLE 102 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + ++DE+H ++ + LL ++E + L + +LSR F K L Sbjct: 103 KRTLVVLDEIHHFNKTQQDVLLPSVERGDIILIGLTTENPYFYINNALLSRFSVFEFKPL 162 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG------QV 232 D + + L+ +L + + A A G R L+ D AI + + Sbjct: 163 DAKDLEQILKRVLKIKEAKIQKDAKDFFITQANGDARRLLNAVDLAILTTAKDSDGIVNI 222 Query: 233 STQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + + G D + +++M ++ + + + G + + Sbjct: 223 TMDVAKECMQKRHLNYDKKGDEHYDVISAFIKSMRGSDPDAAVYWLARMLESGEDPRFIA 282 Query: 283 VEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLY----------YQT 331 +L + + + L + IP +Y Y Sbjct: 283 RRILICASEDVGNAEPAAIMLAEAAFKCAEVLGMPEVRIPLAQAAIYVACAPKSNASYIA 342 Query: 332 LLIGRKELPYAPDRRM--GVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 + KE+ RR+ + + P Sbjct: 343 VDEALKEVREGIQRRVPAHLRSGFKNEGYKYAHDYPNHYVKQEYMPKPKKFYEPTE 398 >UniRef50_Q8TZC5 Replication factor C large subunit n=1 Tax=Methanopyrus kandleri RepID=RFCL_METKA Length = 510 Score = 142 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 18/297 (6%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANG---LSLGRIH--HAYLFSGTRGVGKTSIARLL 58 K+RP++ ++V Q+ LA + G I A L G G GKTS A L Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYAL 61 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPAR 117 A + N E G A++ + R+ + ++ Sbjct: 62 AHDFGWDVIELNASDKRTRNVIEKIVGG--------ASTSRSLLRMTREAGGDYEHVEGH 113 Query: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQKLPVTILSRCLQFHL 175 + L+DEV + + L + +L DP LP ++ Sbjct: 114 SDRVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDPWVLPKSLRDAVRMIEF 173 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + L V I L I E I +E AL+ +A+ A G LR A++ + A+A G+V++ Sbjct: 174 RRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLE-ALARPTGRVTSD 232 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWE-ALLVEMLGLLHR 291 V A+ + + + + + + + + Sbjct: 233 DVEALGWRDKEITIFEALGRIFNKPPRQARRALWNLDEDPDDVILWIAQNIPRAYRD 289 >UniRef50_A8BBR2 Replication factor C, sub 2 n=3 Tax=Eukaryota RepID=A8BBR2_GIALA Length = 351 Score = 142 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 135/356 (37%), Gaps = 52/356 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS K RP ++ Q+H + A + G + H L G G GKT++ + Sbjct: 1 MSA-PWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPH-MLLYGPAGTGKTTLIHAMMH 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---- 116 A + E +A++ ++ R+ + ++ Sbjct: 59 EFFGPRFWRAR------------------VSEFNASTDRGIKIVRERIKSIARTVIAVAP 100 Query: 117 --------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 F+V ++DE L+R S AL + +E+ E +F + P ++ I+S Sbjct: 101 DDVKAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVS 160 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAH----------EPRALQLLARAAEGSLRDAL 218 RC +F +L I +LE I E AL +A ++G +R A+ Sbjct: 161 RCARFAFSSLPRPLIIDRLESICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAI 220 Query: 219 SLTD---QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN--GERVMALINE-AA 272 +L Q + + ++S + V + G + D+ SL+E M + + E ++ +++ Sbjct: 221 TLLQATVQFCQNMEEELSPKHVHLLAGKIPDELIASLIEKMTDVSLPVESLIEYLHKSVV 280 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTIPPTDIQL 327 G ++ E+ + P +L + + R +AR + + I Sbjct: 281 RIGYPALDVIREL---WRSLCFEAQVPESLRHAVGDAYQRAGLYVARRVSDSSILE 333 >UniRef50_B3PM47 ATPase, related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM47_MYCA5 Length = 402 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 108/346 (31%), Gaps = 51/346 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + LA+K RP D V + ++ +++F G G GKT+I+ +LA Sbjct: 1 MN-KNLAQKTRPIALDDFVCNDSQRFLFEKIIANDDF-RSFIFYGKPGTGKTTISYILAS 58 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L +E DL+ ++ Sbjct: 59 SLKVSFDYFNAA----------------------------IEKKEDLVAKLKLN------ 84 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K+ +IDE+H L++ + LL +E + K+ + SRC +K + Sbjct: 85 KILIIDEIHRLNKDKQDILLPYIENDLITIYATTTENPYFKVNPALRSRCAIVEIKNPSI 144 Query: 181 EQIRHQLEHIL--NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAV 237 + + QL+ I N+ +A + G R A++ D +++ + Sbjct: 145 DDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSAINSLDLISTLSKTKKLTLDEI 204 Query: 238 SAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 +L G D + +++ ++ + G + Sbjct: 205 KKILPAIQFTGDSNGDAHFDHLSAFHKSLRGSDPNAALYYGFILVESGDFDGLFRRMICA 264 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 + + + + R+ +P + + L Sbjct: 265 AYEDVGLANPNLPVQVMNAIDAFERLGLPEGYLPIAN--AILEIAL 308 >UniRef50_Q21K67 DNA polymerase III, delta prime subunit n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21K67_SACD2 Length = 331 Score = 142 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 12/282 (4%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 E V A L+ R+ HA L +G G+G ++A+ + + L C + + CG C C+ Sbjct: 13 ESVWDEFAEKLAQKRVPHALLITGQEGLGSDTLAKAMGQLLLCLSPLEGIACGKCRACQL 72 Query: 82 IEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 ++ G DL+ I +A + K++ R + + V +G KV ++ ++ +S NA Sbjct: 73 LQAGSHPDLLWIAPEEAGKQIKIDQIRRVTEFVSKTAQQGGKKVVVVTPTEAMNNNSSNA 132 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK+LEEP +L T ++ TI SRC + L + + L+ ++ I Sbjct: 133 LLKSLEEPAGDTVLILITFQESQILPTIRSRCARIVLTTPSYDVAQSWLQENGHQAAIPL 192 Query: 199 EPRA-------LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 A ++ L + A++ +Q + G VS V+ + G Sbjct: 193 LGEAGGAPLKGVEWLKTEYVEQRQKAMACLEQLASQTRGPVSA--VAQLGGISAPVLVEL 250 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 ++ + ++ A R + L M + ++ Sbjct: 251 MLNLVDSLITTKLAPSSVRAEQRQESIQPLAQYMARVSGQML 292 >UniRef50_Q4V1E4 DNA polymerase III, gamma and tau subunits, N-terminal region n=2 Tax=Bacteria RepID=Q4V1E4_BACCZ Length = 130 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 +Y L R +RP +F D+VGQ+H+ T + N + L ++ HAYL SG RG GKT++A+++ K Sbjct: 3 NYVALYRAYRPNSFNDLVGQDHIKTTIMNAIKLEKVAHAYLLSGLRGTGKTTVAKIIGKD 62 Query: 62 LNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +NC T PC C NC +I +F D++E DAAS VE+ R + D V AP G++ Sbjct: 63 VNCLTPLNNGEPCQKCANCSDINNNKFADILEFDAASNNVVEEIRQIRDQVHLAPVTGKY 122 Query: 121 KVYLI 125 KV + Sbjct: 123 KVCTL 127 >UniRef50_B9JWB1 DNA polymerase III delta prime subunit n=10 Tax=Rhizobium/Agrobacterium group RepID=B9JWB1_AGRVS Length = 346 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 130/337 (38%), Gaps = 35/337 (10%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----- 70 + G LA+ G++HHA L G G+GK ++A A + + Sbjct: 23 DRMFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSHPDPASAPFVI 82 Query: 71 -TPCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRF 120 P R+I G +L+ I S VE+ R G + Sbjct: 83 ADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEIRKAGHFFSQTSGGGNW 142 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 ++ ++D ++R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L+ L V Sbjct: 143 RIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSRCMPLKLQTLGV 202 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST--QAVS 238 + L L ++ + L+ ++GS+ AL + I G ++ A+ Sbjct: 203 DD----LASALAHLGVSPPVEQMAALSDLSKGSVSQAL----KLINYGGMEIIAAFNAIL 254 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV-QL 297 A G Q L +A+ + + + E L ++ ++AM L Sbjct: 255 ASEGPAARKQMHKLADALSAKDSDVIYHFF---------IEHLSEFLMDNARQVAMAGDL 305 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 + A + +++ + +A Q + L Sbjct: 306 ARAERLSRLSSAIIEKLGVAGAYNLDRKQTLLEILGE 342 >UniRef50_Q7VR24 DNA polymerase III, delta prime subunit n=2 Tax=Candidatus Blochmannia RepID=Q7VR24_BLOFL Length = 333 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 53/342 (15%), Positives = 108/342 (31%), Gaps = 29/342 (8%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 + + + + HHA L T+ G+ + +A+ L C+ C C +C Sbjct: 8 NTIYNQILFSYDIKKGHHALLLYSTQNNGEDILINSIARWLICKNSFKIKYCNSCSDCYL 67 Query: 82 IEQGRFVDLIEID---AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + G+ D ++D A V+ RD +D++ + K+ I + L+ + N Sbjct: 68 MNIGQHPDYYQLDLKYQAQSIGVDSIRDCIDSIYRFTQYSKSKIVFIQYIEYLTDEAVNM 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEPP++ F + +P+T+LSRC+++ + L + ++I Sbjct: 128 LLKILEEPPDNTYFFFRSRKIINIPLTLLSRCVKWVVTPPVESLGIEWLINNQKLDNILF 187 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 AL R GS +A + + L + + Sbjct: 188 LTTAL----RLNYGSPIEAKVMLQSDQWKAR--------------------VELCNHIND 223 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + ++ LL + + ++ Sbjct: 224 VIKNGNFLQLLPILKNKEHRYIFISWLITLLVDALKYRQGVKEKFFINLDQLQLILNISV 283 Query: 319 TIPPTDIQLYYQTLLIGRKELPY--APDRRMGVEMTLLRALA 358 + +I + + + LL Sbjct: 284 YWKVLSLHNQLSQWIILFYYFQRFDNINHELLLTCRLLNWQQ 325 >UniRef50_UPI0000E8800C DNA polymerase III subunit delta n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E8800C Length = 318 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 64/368 (17%), Positives = 120/368 (32%), Gaps = 57/368 (15%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M QE L + L R HA + A+ L Sbjct: 1 MRQYPWY-------------QEQ-WETLFHDLE--RFPHALIIHAQDNAVCDDFAQNLCH 44 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYA 114 L C+ + CG CDNC + D +D V+ R L + + Sbjct: 45 ALLCQNRLADDACGACDNCLWVNNHSHPDFFSVDEEGNETTDKLIPVKVIRSLKNFFELT 104 Query: 115 PARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 + K+ I H +++ S NALLK +EEPP +L+T+ + T+ SR Sbjct: 105 SHQSHGKKIAYIARAHRMNKESSNALLKIVEEPPNDCLIILSTSQLDAIIPTVKSRSRLV 164 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 HL E L + ++ + L S A++ D Sbjct: 165 HLHQPVQEDGLAYLHTL----NLDMDASTLAFF----GNSPVAAINERD----------- 205 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 A S+V A+ E A+ N+ G L+ M ++ + Sbjct: 206 -----------TFAHAKSIVRALSEGEALNPDAIKNDWLDYG--LAWLVTVMQKWIYDLL 252 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 + +L+ + + +++LA ++ ++ + L + ++ + +E+ + Sbjct: 253 LFKLTQE--ISYFPGEKSALKKLAGQSSLPNMLVFQKKLNEIKAYASKPVNKEINMEVMM 310 Query: 354 LRALAFHP 361 + Sbjct: 311 MEYRKMFR 318 >UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campylobacterales RepID=D1B0W0_SULD5 Length = 396 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 110/291 (37%), Gaps = 41/291 (14%) Query: 10 WRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 +RP+ ++ GQ+H+ + L G + HA LF G GVGKT++AR++A L Sbjct: 9 FRPKVIEELSGQKHLSGENSPFRKLLKSGSMSHA-LFFGPAGVGKTTLARIVANTLQLPF 67 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 A+ KVE+ R +L + + ID Sbjct: 68 YELD-------------------------ATSIKVEEIRKIL---SQHRGALQKPLIFID 99 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ 186 E+H LS+ LL +E V L I SR + F L+++ + Sbjct: 100 EIHRLSKTQQEVLLLPMENHEAIVIGASTENPYFVLSSGIRSRMMLFEFYPLEMKDMEAI 159 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-------ASGDGQVSTQAVSA 239 LE + + + A + L R++ G R L+L + A+ + A+ Sbjct: 160 LERVHEKIEFQIDEEAREYLIRSSAGDSRSFLNLLEFALKVDLHVNMQTLKALRPSALKD 219 Query: 240 MLGT--LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 + + + ++++++ ++ + + + G + + ++ L Sbjct: 220 GVSSDNTHYNLISAMIKSVRGSDVDAALYYLARLIDGGESPDFIARRLVIL 270 >UniRef50_A6GEP6 DNA polymerase III subunits gamma and tau n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEP6_9DELT Length = 393 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 108/234 (46%), Gaps = 8/234 (3%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F VVG V L+ ++ R+HH +FSG RG+GK ++AR LA L C C Sbjct: 10 RFPGVVGHGRVTAMLSRAIARSRLHHGLVFSGPRGIGKATLARGLACALTCAVSPAVG-C 68 Query: 74 GVCDNCREIEQGRFVDLIEIDAAS-RTKVED--TRDLLDNVQYAPARGRFKVYLIDEVHM 130 G CD+CR + G D ++ V R++ VQ+AP V +ID Sbjct: 69 GQCDSCRRMLCGLHTDFTVLEGQGKSRTVATGPAREVALRVQHAPFEAAAHVIVIDPADR 128 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQ---- 186 + + ALLK++EEP V ++L T+ + TILSRC+ L+AL+ E R Sbjct: 129 MHPAAAAALLKSIEEPRPGVHWVLLATNLHDILDTILSRCMTIPLEALNTEDTRSVVDAE 188 Query: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240 LE + + +PR +L A GS AL L A ++ + A+ Sbjct: 189 LERLAQARGLEVDPRRRELAISLAGGSPGVALELLSDASLEPTKELLAATLRAL 242 >UniRef50_C8SAL8 AAA ATPase central domain protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SAL8_FERPL Length = 506 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 102/285 (35%), Gaps = 23/285 (8%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIH---HAYLFSGTRGVGKTSIARLLAKGL 62 K+RP+T DVV ++ + + LF+G GVGKTS+A LA Sbjct: 3 WVEKYRPKTIKDVVAPSDIIKTVVTWAENWKRGVKQKPLLFAGPPGVGKTSLALALANTY 62 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 E + G + + G+ K+ Sbjct: 63 GWEVVELNASDQRNWSVIYRIVGEGAFNETLSDEGDF-------------LSSREGKLKL 109 Query: 123 YLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++DEV +S+ +AL+K L+ P +L +P L + + + + L Sbjct: 110 IVLDEVDNISKKEDFGGESALIKILKRNPPQP-MILIANEPYNLSPELRNLVTMVNFRRL 168 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +Q+ LE I E I + +AL +A A G LR A++ QA+A G V + V Sbjct: 169 TRDQVVKVLERIAKLEGIEIDKKALYAIADNAGGDLRAAINDL-QAVAEGRKVVKAEDVI 227 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + + +++ + + V + + + Sbjct: 228 -VAKRTQETDVFKVMQKIFKTYYSTVYSEAMLLDESPEDLIYWID 271 >UniRef50_B8KGN9 DNA polymerase III, delta prime subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGN9_9GAMM Length = 331 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 5/207 (2%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + + L + GR+ HA L GT G G+ +A LA+ L C CG C Sbjct: 17 LPWHQETWINLQAQCANGRLPHAMLLEGTPGTGRNRLALSLARYLLCGDMSAQGNCGSCK 76 Query: 78 NCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C G DL+ + A ++ R+++ P GR KV LI L++ Sbjct: 77 TCTLSASGAHPDLLTVMPAETGKAIGIDAIREVIRFAAGTPTLGRSKVMLISPAESLTQA 136 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 +FNA LK LEEP ++ + LP TI SRC ++ L + +++ R L+ L+ Sbjct: 137 AFNAFLKCLEEPSSETFIVMVSASGYPLPATIRSRCQRWKLPSPSLKESRAWLQEALS-- 194 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLT 221 A ++ + + G AL Sbjct: 195 GDADGAASIDAMLELSGGRPLYALEKL 221 >UniRef50_A9FJE4 DNA polymerase III delta' subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJE4_SORC5 Length = 331 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 108/282 (38%), Gaps = 32/282 (11%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 F+ ++GQ+ + L L GR+HHAY F G GVGK A L++ L C G Sbjct: 1 MPFSHILGQDTAVGTLVRALEAGRVHHAYRFEGPPGVGKELAAVALSQALVCTGGDPLG- 59 Query: 73 CGVCDNCREIEQGR--------FVDLIEI--------------DAASRTKVEDTRDLL-D 109 CG CD CR D+ + D + V+ R ++ Sbjct: 60 CGRCDACRRAAARSDGRPAAPLHPDVQIVAKNFYPAAVIGRSRDELTEISVDQVRAIVLA 119 Query: 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 Y P GR +V+++ + LS + NA LKTLEEP F+L T+ +L TI SR Sbjct: 120 RAAYPPHEGRARVFIVRDAEDLSVGAANAFLKTLEEPRPGTHFILLTSRGDRLLNTIRSR 179 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L L IR L E L A GS AL L D+ + Sbjct: 180 TLPVRFAPLSEALIRRILRDRGVPEGRH------DLAVELAAGSASTALDLADEEQTASR 233 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 + V D A++ E++ + + + + Sbjct: 234 DAF-VKRVLEAAAARDLGPAVAFAESV-DRDKGALKDDLRAL 273 >UniRef50_Q2RKY3 DNA polymerase III, delta subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKY3_MOOTA Length = 330 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 100/330 (30%), Gaps = 35/330 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 A+ + G I YLF G+ G K ++L K L Sbjct: 3 WQAMVEEVKQGYIAPVYLFYGSEGYLKERALKILEKKLIPPET----------------- 45 Query: 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 D E+D T +++ PA ++ +I + LK L Sbjct: 46 -GDFDYQELDGRELTGA----EVIMLAATLPAMAERRLVVIKDPAG-EIWQDEDFLKYLT 99 Query: 145 EPPEHVKFLLATT----DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 +P +L K I S L E + L +E P Sbjct: 100 KPEPATCLVLVVNGSIDKRLKAVKEINSTGRVVECSPLQGEDLAAWLIKEARQEGYNLPP 159 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSAMLGTL-DDDQALSLVEAMV 257 +LARA G LR A + D+A+A ++ V A++ + ++ LV+A+ Sbjct: 160 ATALILARAGGGDLRQARNELDKAMAYTGKPGTITPATVQALIPEIEAENTIFQLVDALG 219 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA-----ALGNDMAAIELR 312 E + + + RG ++ + L I L A + + Sbjct: 220 NRKPELAIGFLRQLLERGEAPLGIVAMLARQLRLIYRAHLGGDKRNLAARLGVKPFVARK 279 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + AR + LL L Sbjct: 280 VAAQARNFSLPVAGQALEELLKVDTALKTG 309 >UniRef50_B6IMK3 ATPase i n=1 Tax=Rhodospirillum centenum SW RepID=B6IMK3_RHOCS Length = 372 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 114/336 (33%), Gaps = 46/336 (13%) Query: 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 + P+ +VG E L + GR+HHA+L G G+GK ++A +A+ + + Sbjct: 10 DPFAPRRNPHLVGHEQAERLLLESWTSGRMHHAWLIGGPPGIGKATLAFRMARFVLKQGT 69 Query: 68 ITATP--------------CGVCDNCREIEQGRF---------VDLIEIDAASRTKVEDT 104 R I G D V++ Sbjct: 70 GGNDAALFGAPPPPVTLAVDTEHPVARRIAAGGHADLLTVQRTWDEKRKRFKRDLPVDEV 129 Query: 105 RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 R + ++ A G ++V ++D ++ NALLK LEEPP L+A + L Sbjct: 130 RRIAPFLRLTSAEGGWRVVVVDGADQMNLSGQNALLKILEEPPARSLILMAADNVGSLLP 189 Query: 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 224 TI SR + L+ L + L E + A LAR AEGS+ AL Sbjct: 190 TIRSRSRKLMLEPLPEATVVGLLGRYAPE----LDREAQTALARLAEGSIGRAL------ 239 Query: 225 IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA--LL 282 + G Q L L+E + + I++ + + Sbjct: 240 -----------DLHHAGGLDLYRQMLGLLETLPRLDVLAAYGFIDKVLRGNDDAAWSAVT 288 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 ++ L R+A G +A + L Sbjct: 289 DLLVWWLGRLARTTARGQLPGEVVAGEGPLIARLVE 324 >UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6BHR7_DEBHA Length = 786 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/409 (16%), Positives = 133/409 (32%), Gaps = 95/409 (23%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + LA++ RP++ + GQE ++ L N + +I +++ G GVGKTS+AR++ Sbjct: 190 AELPLAQRLRPKSLDEYYGQEKLVGENGILKNIIKSDQIP-SFILWGVPGVGKTSLARII 248 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 ++ NC+ + G RE+ ++ R L G Sbjct: 249 SQTSNCKFLEVSGAEGNAKRLREVFTMA---------------DNERRL---------TG 284 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 R + +DE+H ++ + LL +E+ V L +LSR F ++ L Sbjct: 285 RKTILFLDEIHRFNKAVQDLLLPVIEKGIVTVIGATTENPSFTLNNALLSRMHTFIMEPL 344 Query: 179 DVEQIRHQLEH-----------ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 E I + + IA + A+ +A + G R AL++ + A Sbjct: 345 LKEDIVKIINRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSRVALNILESINAY 404 Query: 228 --------------GDGQV-----------------------STQAVSAMLGTLDDDQAL 250 G+ + + Q + G D Sbjct: 405 LSSVQYSRFSGYEEGEKAIQIPKTLGVIKVCLQNLKPLLETRNYQKMYDKQGESHYDTIS 464 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL------LHR---IAMVQLSPAA 301 + +++ ++ + + + + G + + M+ + L + + A Sbjct: 465 AFHKSVRGSDADAAVFYLVKMLVGGEDPLFIARRMIVIASEDVGLRDSSCLPFAIATKEA 524 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLY------YQTLLIGRKELPYAPD 344 L + T + Y+ L + PD Sbjct: 525 LEFVGMPEGEIILAHCAT----KLARAPKSTKSYRALRSAQSLFKENPD 569 >UniRef50_P40938 Replication factor C subunit 3 n=106 Tax=Eukaryota RepID=RFC3_HUMAN Length = 356 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 123/347 (35%), Gaps = 35/347 (10%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 MS + K+RP + + + L N + G H L G G GK + + + Sbjct: 1 MS--LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH-LLVYGPSGAGKKTRIMCILR 57 Query: 61 GLNC--------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ 112 L E TP I +++ DA + +V +++L V Sbjct: 58 ELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRV-VIQEMLKTVA 116 Query: 113 YAP-----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + ++ FKV L+ EV L++ + +AL +T+E+ + +L K+ I Sbjct: 117 QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIR 176 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD----- 222 SRCL + A +E I H L + +E + + LA + +LR AL + + Sbjct: 177 SRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQ 236 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 Q + D ++ L + A ++V V + E I E ++ Sbjct: 237 QYPFTADQEIPETDWEVYL----RETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIM 292 Query: 283 VEML-GLLHR--------IAMVQLSPAALGNDMAAIELRMRELARTI 320 +L LLH +A + + + Sbjct: 293 KGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 339 >UniRef50_Q38YT4 DNA-directed DNA polymerase III, delta prime subunit n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38YT4_LACSS Length = 330 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 138/342 (40%), Gaps = 27/342 (7%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q ++ A ++ G++ H YL +G +GVGK +A+ LA L C+ + PC C C Sbjct: 10 QPKLVQQFAQIIARGQLAHGYLLAGAQGVGKMQLAQWLALRLFCQQVNEDSQPCYQCPEC 69 Query: 80 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 + I G D++EI K+ D R L V + ++++I+ L+ + N+ Sbjct: 70 QRILTGNHPDVVEIKPDGKSIKIADIRYLKQEVAKSGMESSQRLFIIEAAETLTASAANS 129 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP +V +L T++ + TILSR L L +E + Sbjct: 130 LLKFLEEPAPNVYAILCTSNKNLMLPTILSRLQVIDLAN-------------LPKEMVRQ 176 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + Q+L A+ LS + ++ + ++ S + + + Sbjct: 177 QFEEAQILPAQAQ-----LLSHLTSDLTQAQQLLAEDWLMQVVAK-----ITSWAQKVAQ 226 Query: 259 ANGERVMALINEAAARGIE--WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 + E + + + + + + + ++GL ++ + A + ++ + Sbjct: 227 KDLESFVTIQTQLLPLLTDRSQQKIALNLIGLWYQDLLNCRCDLAGDLCFSEYRTQLNTI 286 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + +I + +L ++ + +E L +A Sbjct: 287 SQQMTAAEIVAQTEFVLTAQRTFEQNVSCQNVLESLTLNLIA 328 >UniRef50_Q1NYC4 DNA polymerase III delta prime subunit n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NYC4_9DELT Length = 387 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 80/365 (21%), Positives = 122/365 (33%), Gaps = 76/365 (20%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----- 69 F+ + Q+ L+ L+ G++ HAYLF G GVGK A LA LNC+ Sbjct: 5 FSQLREQDPAKEMLSRALNSGKLAHAYLFRGPAGVGKKRAAYALAATLNCQQPPPTDSRQ 64 Query: 70 ------------------------------------------------ATPCGVCDNCRE 81 CG C CR+ Sbjct: 65 VTNQGDHEVSDHGVPHLAASETAMRTSVREPARSPQDAVPRDRLPRQGLEACGRCPACRK 124 Query: 82 IEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G DL+ + K+ R++ +++ P G ++V L+ EV + R + N+LL Sbjct: 125 FAAGSHPDLLTVSPEGAAIKIGQVREIKKALRFPPLEGSYRVVLVKEVQTMRREAANSLL 184 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 K LEEPP +L + + TILSRC AL + L E P Sbjct: 185 KILEEPPPATILILTGDEAGAILPTILSRCQVIPFYALSTATVATML----GAEGETLPP 240 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 A LA AEGSL A L + + ++ + + Sbjct: 241 AAAATLAALAEGSLGRARLLRQKELLPLRREILLALLEQQPDAPAAVEI----------- 289 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP----AALGNDMAAIELRMREL 316 ++ L AA E LL + G H +A++ + +E + Sbjct: 290 ---ILELAERCAALKDELPELLELLTGCFHDLAVLASAGRPTEQRRPLLNHDLEPELINA 346 Query: 317 ARTIP 321 A Sbjct: 347 AGRWD 351 >UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulfovibrionales RepID=C7LWR1_DESBD Length = 430 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 118/360 (32%), Gaps = 56/360 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 + LA RP++ D +GQ H L + + LF G G GK+++A LLAK + Sbjct: 19 RPLAESLRPESLDDFIGQSHFRQRLRTLMQSKDLPSLLLF-GPPGCGKSTVALLLAKHAD 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 + P + R + + ++ Sbjct: 78 KPFVRVSAP-------------------------EVGITALRKQIQD---------KEIL 103 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 ++DE+H S+ + L LE + + +LSR L++L + ++ Sbjct: 104 ILDELHRYSKAQQDFFLPLLETGELTLIATTTENPSFSVTRQLLSRLHVLRLRSLGMAEL 163 Query: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-- 241 + + + ++L+LLA + G R L+L + A + + + L Sbjct: 164 VDVGKRGMEKLDSLIPEKSLELLATLSGGDARTMLNLVEFAAGLEEKDLEPDQLKTRLPE 223 Query: 242 --------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML-GLLHRI 292 G + A +L++++ ++ + + + G + + ++ + Sbjct: 224 IVLRGDREGDSHYELASALIKSIRGSDPDAALYYLASLVETGEDPRFICRRLILSAAEDV 283 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL----------LIGRKELPYA 342 + L R+ IP + +Y L KE+ Sbjct: 284 GLGDPMALPLAVSCEQAVERIGMPEGWIPMAETTVYLALAPKSNSAYAGYLSAIKEIRTN 343 >UniRef50_UPI000050FDAF DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FDAF Length = 385 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 134/383 (34%), Gaps = 49/383 (12%) Query: 15 FADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++VGQ+ V+T L + L G + HA+LF+G G G+++ AR A L Sbjct: 4 FNELVGQDDVITQLKHALYSPGAMTHAWLFTGPPGSGRSNAARAFAAALISGGEEQGD-- 61 Query: 74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 R ++ I S +++ R+L+ Q AP ++V +I++ +S Sbjct: 62 ---VTARVLKGHHESLTIMSTQKSVIAIDEVRELVTRAQSAPVNSPWRVVIIEDADRMSE 118 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + N LLK +EEPP +LL P + TI SRC L+ + + L Sbjct: 119 RTANVLLKAIEEPPPATVWLLCAPSPIDVLTTIRSRCRPVRLRIPSRDAVAQLLI----- 173 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSL-TDQAIASGDGQVS------------------- 233 E +P + A A+ + A + +++ Q+ Sbjct: 174 ERDHVDPDRAKWAAAVAQNHIGRAKYMALNESADEERRQILAIPGKLTSVGATIRLAGRI 233 Query: 234 ----TQAVSAMLGTLDDDQALSLVEAM----VEANGERVMALINEAAARGI--------- 276 + + + + + L+ + ++ + I + Sbjct: 234 VDEAAETAKSRVEERNASERSDLMATLGIESEKSIPPSARSQIRKLEEEQKRRSVRARND 293 Query: 277 EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 E + + +E++ L I M QL A + E A P L + R Sbjct: 294 ELDRIFLELMSLYRDILMYQLGIREGW-INAGEVDLISEQANRDGPDTTLLRIDAITEAR 352 Query: 337 KELPYAPDRRMGVEMTLLRALAF 359 + L + VE + Sbjct: 353 RRLQTNMSPVLIVESAFVLLSNP 375 >UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Amniota RepID=A6QR70_BOVIN Length = 638 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 105/341 (30%), Gaps = 79/341 (23%) Query: 4 QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP D VGQ + T L + L + + + G G GKT++A ++A Sbjct: 198 KPLADTMRPDALQDFVGQGRAVGPETLLRSLLEASEVP-SLILWGPPGCGKTTLAHIIAN 256 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 + +A+ K D RD++ Q R Sbjct: 257 ----------------------NSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKR 294 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + IDE+H ++ + L +E + ++ +LSRC L+ L Sbjct: 295 KTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLP 354 Query: 180 VEQIRHQLEHILNEEHIA------------------------HEPRALQLLARAAEGSLR 215 VE + L +N I E +A+ LA ++G R Sbjct: 355 VEAVVTILMRAVNSLGIQVLDSSRPADPLSHGGNSSSESSVLIEDKAVDTLAHLSDGDAR 414 Query: 216 DALSLTDQAIAS------------------GDGQVSTQAVSAML----------GTLDDD 247 L+ A+ + V+ V L G + Sbjct: 415 AGLNGLQLAVLARLSARKTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYN 474 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 +L ++M ++ + + G + + ++ Sbjct: 475 CISALHKSMRGSDSSAALYWLGRMLEGGEDPLYVARRLVRF 515 >UniRef50_D2NPK2 ATPase involved in DNA replication n=2 Tax=Rothia mucilaginosa RepID=D2NPK2_9MICC Length = 380 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 132/383 (34%), Gaps = 46/383 (12%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPC 73 + ++ L L + R HA+LF+G G A++ A L CE C Sbjct: 4 WDTLLIPADKLQQLRTDAAADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDPQNRGC 63 Query: 74 GVCDNCREIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 G C C + G D A+ +++ R+L+ Q P GR++V L+++ + Sbjct: 64 GQCKGCVTVMNGSHADFTHFSTEATHISIDEARELVMKAQDRPTVGRWRVILVEDTERMP 123 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + N LLK +EEPP H +LL P + VTI SRC L Q+ L Sbjct: 124 ERTSNVLLKAIEEPPPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPTDAQVHEYL----- 178 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV-------------------- 232 AR A G ++ L A ++ Sbjct: 179 -LAHGVVDPLAHRAARLALGDAQEGYRLATDERAMARRELITSLILNVRSISSAFNAAEK 237 Query: 233 ----STQAVSAMLGTLDDDQALSLVEAMVEANGERV----------MALINEAAARGIEW 278 + Q A+ D+ + L+ + GERV + + A+ + Sbjct: 238 LTDLADQDAQAVSALKDEQERQELLALLGIREGERVSPSLRAQVRRLEEQQKRRAKRVSS 297 Query: 279 EALLV---EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 + LL ++ +L V LS A + + + Q + + Sbjct: 298 DTLLRSVAQVQTVLRDALTVALSAQAPL-VNEHLREPLEAFCTRRSAQQLLEDVQAVELT 356 Query: 336 RKELPYAPDRRMGVEMTLLRALA 358 + L + R+ +E + R + Sbjct: 357 LRRLRTNANARLALEALMSRFVY 379 >UniRef50_UPI000197631E DNA polymerase III subunit delta'''' n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI000197631E Length = 394 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 131/390 (33%), Gaps = 56/390 (14%) Query: 15 FADVVGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ V+ L +S + ++L G G G++++AR A L E+ Sbjct: 4 WDSIVGQQAVVGQLQAIVSGDPKALAQSWLICGPPGSGRSNVARAFAAAL--ESPDRGLS 61 Query: 73 CGVCDNCREIEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 + R++ G D+ + ++D R L+ + P+ +++ +I++V + Sbjct: 62 DEPTNITRQVLSGTHPDVTTLATNKVTIGIDDVRQLILTSEQMPSTAPWRIIIIEDVDRM 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH-- 189 + N LLK +EEP H +LL Q + TI SR +L + + L Sbjct: 122 LERTTNVLLKEIEEPSPHTIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTKAVADYLMASV 181 Query: 190 --ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 L E + AR AEG + A D + + +LG Sbjct: 182 NPALPAER-QFDRHVAVRAARLAEGHIGIAKLYASDTQVMSDR---DELIVGLLGLRKAS 237 Query: 248 QALSLVEAMV-----------EANGERVMALINEAAARGIE------------------- 277 A+ L + ++ A G + Sbjct: 238 DAVLLADDLIDTAKSQAEADVNRQTAAAEADFRRINGLGEQDRIPPKLRGAYNAIAKKDE 297 Query: 278 ------------WEALLVEMLGLLHRIAMVQLSP-AALGNDMAAIELRMRELARTIPPTD 324 + L + IA++Q + A+G + EL+ + + Sbjct: 298 IKRRATRRSRDVLDRALNSAASIYRDIAVLQNNAEDAVGLINMENRTAIAELSARLSRQE 357 Query: 325 IQLYYQTLLIGRKELPYAPDRRMGVEMTLL 354 + + + + RK L + + E Sbjct: 358 VVDRLEAITVARKRLLGNGNPMLVFEALFC 387 >UniRef50_B0P9B3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9B3_9FIRM Length = 314 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 123/329 (37%), Gaps = 39/329 (11%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 ++ L+ + GR HA L G G GK + A L+A+ C PCGVC Sbjct: 4 LLYNRRAGAVLSGMAAGGRFPHALLLEGPAGCGKKTAAALIAQERLCTGAP--RPCGVCS 61 Query: 78 NCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C ++E+G D+ + VE RD+ + AP G KVY++D+ H ++ Sbjct: 62 GCIKVEKGVHPDVRFYTVPEGKKEFPVELARDIRQDAYIAPNEGACKVYIVDQAHTMNAS 121 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK +EEPP V F+L + ++ TILSR + L+ ++ L + + Sbjct: 122 AQNALLKIIEEPPAGVYFILLCENRAQMLPTILSRVVSVELETPSPDECAAALASLEPD- 180 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + A A G++ A +L A + S A A L L E Sbjct: 181 ---VPEEQRRAAAAGAAGNIGQARALLKTA------KPSKAAADARL----------LRE 221 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A+V + + ++ L + ++A+ + + Sbjct: 222 ALVFGDRYTALRILAAYDKDRAALGQTLALLREGFAQVALGRETD--------------A 267 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAP 343 + + P Q + R Sbjct: 268 RFSNRVSPGQAVAAAQIVQTARLRAERNT 296 >UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHI5_9BACT Length = 430 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 67/394 (17%), Positives = 132/394 (33%), Gaps = 61/394 (15%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ F D GQ H+ L + + +F+G G GKTS+A +++K Sbjct: 10 EPLAATLRPEGFGDFFGQGHLTAEGSLLRRSIENDCFS-SIIFTGPPGTGKTSLASIISK 68 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 D I + A V + R + A Sbjct: 69 ------------------------HTEADFIALSAIDS-SVSEVRKAVKAADEARKFSGR 103 Query: 121 K-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 K V +DE+H ++ ++LLK +E L + SR L F LK L+ Sbjct: 104 KTVLFVDEIHRFNKAQQDSLLKDIENGTVRFIGATTHNPGFYLTPALCSRSLIFTLKPLE 163 Query: 180 VEQIRHQLE-------HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQ 231 ++ LE L E + + L+ L+ EG R AL++ + A+ + + Sbjct: 164 ASAVKSLLEAKMTKIMKALEAE-LQFDEEGLKFLSENCEGDARRALTVIELAVKTAQSDK 222 Query: 232 VSTQAVSAML--------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + + + L + A + +++M ++ + + + G + + Sbjct: 223 IGLEELRECLQVKSYKYDADAHYNAASAFIKSMRGSDPDAAVYWLAYMLEAGEDIRFIAR 282 Query: 284 EMLGLL---------HRIAMVQLSPAALGNDMAAIELRMRELARTI--PPTDIQLYYQTL 332 ++ + + + A+ + A T Y+ + Sbjct: 283 RIMIFASEDVGNADPRALQLAVSASQAVDIVGMPEARIILSQAVTYCATAPKSNAAYKAV 342 Query: 333 LIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLP 366 + +++ ++R V LR P Sbjct: 343 NLALEDVK---NQRSQVIPMHLRDPRSSGYNPEE 373 >UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria RepID=A5V4N3_SPHWW Length = 481 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 43/326 (13%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ADV+GQEH+ A+ ++ GR+ + + G G GKT+IARLLA Sbjct: 63 PLAERLRPRTLADVIGQEHLTGPEGAIGRMVAAGRLS-SLVLWGPPGTGKTTIARLLADA 121 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 + + A + V D + + + G Sbjct: 122 VGLRFAPVS-------------------------AVFSGVADLKKIFAEAREHARIGTRT 156 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + +DE+H +R ++ L +E+ + +L +LSR L LD Sbjct: 157 LLFVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNAALLSRAQVLILNRLDAA 216 Query: 182 QIRHQLEHILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAIA------SGDGQVS 233 + + E + A + L +A+G R L+ + + G+++ Sbjct: 217 ALGKLIARAEEIEERALPLTEGAREALVASADGDGRFLLNQAETLFSIAIDHPLEPGELA 276 Query: 234 TQA-----VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 V + +L +++ ++ + + + G E +L ++ Sbjct: 277 ALLHRRMAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRF 336 Query: 289 L-HRIAMVQLSPAALGNDMAAIELRM 313 I + + Sbjct: 337 ASEDIGLADPQALVQCLAAKDAYDFL 362 >UniRef50_C4V742 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V742_NOSCE Length = 293 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 43/314 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + K+RPQ + H+ L N S + L G G GKT+ A LLA Sbjct: 1 MT-VLWTEKYRPQNISTFESLPHIKNFL-NMSSPNDFPN-LLLYGPPGTGKTTFAHLLA- 56 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + +E++A+ + RD + Y+ + Sbjct: 57 --------------------------STNKLELNASDERGINVIRDKIK--SYSQTLKKN 88 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 K ++DE L+ + + L + +E+ + +F+ T K+ + SR ++ + Sbjct: 89 KTIILDECENLTEDAQHCLRRIIED-SVNTRFIFTTNYLSKVISPLKSRLVKLKFEIR-- 145 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSA 239 + L I E++ ++ + L LR ++++ + + Sbjct: 146 --FGNTLSKIGKAENLTYDEDFYKKLFYKCNCDLRRSINVLQALAPLQSINNNTKNDLID 203 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 + + ++ +++ + + IN+ G + ++ I ++ Sbjct: 204 DIIGIIPEEIFIKFKSITKNSYNS---FINDFLFEGYSVIEFIHQLSDF--EIFNKEILK 258 Query: 300 AALGNDMAAIELRM 313 A + IE ++ Sbjct: 259 AKFNLLLCEIEEKL 272 >UniRef50_Q0BT78 DNA polymerase III, delta' subunit n=4 Tax=Acetobacteraceae RepID=Q0BT78_GRABC Length = 342 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 128/354 (36%), Gaps = 48/354 (13%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + + G E LA+ + GR+HHA+L +G G+GK ++A A+ L + Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65 Query: 72 P------------CGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDN 110 R + DL+ I+A + V+D R++ Sbjct: 66 SQHEKKADSPLWLSPEHPVFRRVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREIASF 125 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + PA G ++V ++D L+RH+ NALLK LEEPP LL+ + P +L TI SRC Sbjct: 126 LHLTPAEGGWRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTIRSRC 185 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 L+AL+ ++ L +L + LLA AEG+ AL L + + Sbjct: 186 RMLRLQALEAAPMQDVLATLLPD----LAAAERDLLAGLAEGAPGRALQLAKEDGLALSR 241 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLH 290 ++ + A ++ G+ + + ++ Sbjct: 242 -LAEDILRAPPSASHRYDLADMLT-----KGDTAFSTFMLLLRA---------TLARMVR 286 Query: 291 RIAMVQLSPAALGNDMA--------AIELRMRELARTIPPTDIQLYYQTLLIGR 336 + A R+++ Q + L + Sbjct: 287 QAARSGSGSDEFLCLRPLDAWSDVWHALGRLQDETERFHLDKRQAIFAGLSLLD 340 >UniRef50_P60373 Replication factor C large subunit n=1 Tax=Nanoarchaeum equitans RepID=RFCL_NANEQ Length = 430 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 98/331 (29%), Gaps = 42/331 (12%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGL---SLGRIHHAYLFSGTRGVGKTSIARLLAK 60 L K+RP+T +V QE L + + A L G G GKTS LA Sbjct: 31 IPLFIKYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLLYGPPGTGKTSSVYALAN 90 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY-APARGR 119 L E ++A+ ++ P + Sbjct: 91 ELGYEVLE------------------------VNASDERDAIHIHHIVGEASKGKPLFHK 126 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 ++ L+DEV LS + L A + + + K Sbjct: 127 GRIILVDEVDGLSGKEDRGGVGALVNIIKQSSWPIICTANDPWDQKLKKLREISIMVEFK 186 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L + + + L+ I+ E I + L +A + G LR A++ + I G + Sbjct: 187 RLSPKHVYNVLKKIVTNEKIKISDKILWDIAYKSGGDLRAAINDLETII--KSGIIDENF 244 Query: 237 VSAMLGTLDDDQALSLVEAMVE-ANGERVMALINEAAARGIEWEALLVE--------MLG 287 V A+ + + M + N ++ N E L E + Sbjct: 245 VKALGNREQEIDIFKALGIMFKTENLATAVSAFNNVDLEFDEIFPWLEENIPVEYKRLDD 304 Query: 288 LLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + + + R+ A+ Sbjct: 305 IYRAYYWLGKADIFRKRIIKTQHWRLLVYAQ 335 >UniRef50_A3YHR7 DNA polymerase III subunit delta n=1 Tax=Marinomonas sp. MED121 RepID=A3YHR7_9GAMM Length = 322 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 10/264 (3%) Query: 33 SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 + + HA L G G G+ +A +A + C+ + CG C +CR G D Sbjct: 25 ANQALSHALLLMGKDGGGQHLLATQIAYDILCDQKQLNSACGECHSCRLNHAGTHPDYHL 84 Query: 93 IDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 +D KV+ R ++ V +P KV ++ + ++ ++ NA+LK LEEPP Sbjct: 85 LDGQEGTIKVDQIRQIITKVATSPQVSHAKVVILAQAASMNINAANAVLKALEEPPSGTY 144 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE------HILNEEHIAHEPRALQL 205 F+L +L T+ SRCL +L QI + + + + +P L Sbjct: 145 FILTADASSQLIATVRSRCLLINLPEPSSAQIEEWFSGLDLEDDVADIQWVTKQPFTLYQ 204 Query: 206 LARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML-GTLDDDQALSLVEAMVEANGERV 264 LA++ G + + G++S V + L D + + Sbjct: 205 LAKS--GRSLLYKDVPENIDKYLQGEMSADLVLSKLDSKNSADFLFAYSALFHQCICYST 262 Query: 265 MALINEAAARGIEWEALLVEMLGL 288 A + + + LL + Sbjct: 263 GAYVPNLSQIQSTLDRLLNRLGIH 286 >UniRef50_Q99K91 Rfc2 protein (Fragment) n=55 Tax=Eukaryota RepID=Q99K91_MOUSE Length = 272 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 99/242 (40%), Gaps = 23/242 (9%) Query: 52 TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV 111 T+ LA+ L A ++E++A++ ++ R+ + Sbjct: 1 TTSILCLARALLGPALKDA-------------------VLELNASNDRGIDVVRNKIKMF 41 Query: 112 QYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 +GR K+ ++DE ++ + AL +T+E + +F LA K+ I S Sbjct: 42 AQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQS 101 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 RC L Q+ +L +++ +E + + L+ + A+G +R AL+ Q+ SG Sbjct: 102 RCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL-QSTFSG 160 Query: 229 DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G ++++ V + +++ V+AN + ++ G E ++ + + Sbjct: 161 FGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRV 220 Query: 289 LH 290 Sbjct: 221 CK 222 >UniRef50_Q043K3 Helicase subunit of the Holliday junction resolvase related ATPase n=11 Tax=Lactobacillus RepID=Q043K3_LACGA Length = 429 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 124/343 (36%), Gaps = 66/343 (19%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA RP+ + VGQ+ ++ L + + + L G G GKTS+A+++A+ Sbjct: 8 KPLADLIRPKDLSQFVGQKDLIEEGRPLYQIIKK-HVPISLLLWGPPGTGKTSLAQIIAR 66 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 + A +++ L + P + Sbjct: 67 EFDYP----------------------------LATFNASIDNKAKLTQIINTYPYQSF- 97 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V LIDE+H ++ + LL LE + + + SRC F KAL Sbjct: 98 -VLLIDEIHRMTTTLQDFLLPYLENGRILLIGATTENPIMSIVPAVRSRCQIFEFKALSD 156 Query: 181 EQIRHQLEHILNE------EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 E I L L E E+I + +A++++A +A+G LR AL+L + A + +S Sbjct: 157 EDIEQVLIRALKEVFHFKDENI--DRKAVKIIAISADGDLRVALNLLETIHA-VNEDLSV 213 Query: 235 QAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + V + T D + +++ ++ + + + G + Sbjct: 214 EEVKQFVKGQHFAYDRKATKHYDYLAAYSDSIAGSDTDAALYYLAVLLKNG--------D 265 Query: 285 MLGLLHRIAMVQLSPAALGNDMAAIELRM---RELARTIPPTD 324 + ++ R+ ++ +G ++ A I Sbjct: 266 LASVVRRL--REIPYTYIGLANPEQATQIVIAANQAEKIGMPK 306 >UniRef50_Q7NRQ8 DNA-directed DNA polymerase III, delta subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NRQ8_CHRVO Length = 334 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 126/355 (35%), Gaps = 51/355 (14%) Query: 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDN 78 Q T L R+ A+LF+G G+GK + A LA+ L CE+ PCG C Sbjct: 5 WQSADWTRL--SAERERMPGAWLFTGAAGIGKLAFAEHLAQSLLCESPAAGHQPCGQCQG 62 Query: 79 CREIEQGRFVDLIEIDA-ASR---------------TKVEDTRDLLDNVQYAPARGRFKV 122 CR G D + A K+E R+++D R +V Sbjct: 63 CRWFHSGTHPDFRRLSPFADEEEEGKEAKTTRKLPQIKIEAVREVIDFAHLTAHRAGRRV 122 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 L++ L+ + NALLK LEEPPE V FLL + PQ+L TI SRC QF L Sbjct: 123 ILVEPAESLNLAAANALLKILEEPPEAVLFLLVSHAPQRLLPTIRSRCRQFALTRPAESA 182 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 L+ E A A + L D +A+ GQ LG Sbjct: 183 ALAWLK----------EQGVANAEAELAH-NGGAPLFDHDPELAALRGQFVRG-----LG 226 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 L L E + + ++ L + LH +A + L+ Sbjct: 227 QPSFAGMLQLAELIDKNKQLSLL--------------QPLSWLQKWLHDLAALCLAG--R 270 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 E + LA + Q L + + R+ +E L+ L Sbjct: 271 VRYYPDHERALAALAPRCDAVQLMACQQALTALAPFSQHTLNARLQLEAVLMDYL 325 >UniRef50_Q11HZ8 DNA polymerase III, delta prime subunit n=4 Tax=cellular organisms RepID=Q11HZ8_MESSB Length = 354 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 127/339 (37%), Gaps = 32/339 (9%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP----- 72 +VG E+ + LA+ G++HHA LF+G G+GK ++A LA L P Sbjct: 25 LVGHENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRLGPLDFSD 84 Query: 73 -CGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARGRFKV 122 + R QG ++ + + V++ R + + P G ++V Sbjct: 85 IDTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSLTPPDGGYRV 144 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++ ++ NALLK LEEPP F+L T +L TI SRC + L L Sbjct: 145 VIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKLDPLSPGL 204 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L+ + + +LL + A+GS RDA+ LT+ G ++ QA+ +L Sbjct: 205 LEKLLQSLGAS--LPETEEERRLLIQRAQGSARDAILLTE----FGGLEI-EQAIENLLE 257 Query: 243 TLDDDQ--ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300 D A L EA + L N A + A G IA + Sbjct: 258 QRRFDVPAAYKLAEAATGRERQVQFDLFNRAVLDRVANAASHSASAG---DIAQAERFAN 314 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 Q +L + Sbjct: 315 -----FWEELAETIRQVEIFNLDRKQHVVSSLNRLHNAM 348 >UniRef50_C3RP52 Predicted protein n=3 Tax=Bacteria RepID=C3RP52_9MOLU Length = 313 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 60/339 (17%), Positives = 124/339 (36%), Gaps = 39/339 (11%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + N S RI HA+L G + LA L C+ C C++CR Sbjct: 9 QPIFYNLIKNEFSQQRIPHAFLLIGNNTNIPLT---YLAMSLICDET---LACENCNDCR 62 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 ++++ ++ D+I + K + + D + + G+ K+Y+I+ + ++ + N L Sbjct: 63 KVKENKYSDIIRFNGKDNSIKKGNIELIQDTFKKSSLEGKAKIYIIENIEYATKEAMNTL 122 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP E + + + ++ TILSRC +K E I L Sbjct: 123 LKMLEEPTEGIYAIFTANNASRVLPTILSRCQVIDIKPDSKEVIIGALCQ------DGIT 176 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + +LA A S+ +A +L D+ Q ++ +E + Sbjct: 177 KESAHILAYLA-PSIEEAKTLYDERFEYMQLQ-----------------VINFIEDLFLK 218 Query: 260 NGERVMALINEAA---ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMREL 316 ++ + + L ++ + + V+ + + +R + Sbjct: 219 RANLIINTQTNLLKKYKERDDIKLFLNMLVLAMKDMFHVKHTDD---IVYCEHQEFLRNI 275 Query: 317 ARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I + + + +L + + M ++ + R Sbjct: 276 --KIDESQLIKQIEIILETIYTIESNANVPMLMDSMMYR 312 >UniRef50_B9YAF1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAF1_9FIRM Length = 331 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 117/339 (34%), Gaps = 28/339 (8%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q V L + L ++ HA+LF G +G + A LLA+ L C+ C C +C+ Sbjct: 11 QPVVYQTLKHALVQKKLAHAFLFVGQKGTPRLETALLLAQSLICQHVHDGFACEECSDCQ 70 Query: 81 EIEQGRFVDLIEID-AASRTKVEDTRDLLDNVQYAPAR-GRFKVYLIDEVHMLSRHSFNA 138 I + + DLI +D A+ K ++ L + KVY+++ + + N+ Sbjct: 71 RIAEANYADLILLDGASKSIKKDEILSLQERFNKTGLERSGQKVYILNNAENTTPEALNS 130 Query: 139 LLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 LLK LEEP +L + ++ TI+SRC + L Q + I EE + Sbjct: 131 LLKFLEEPQGSDTLAILIVENQDRILPTIVSRCQTLTFRPLTQRQ----IHQIALEEQLD 186 Query: 198 HEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 L + + + + + ++ E + Sbjct: 187 ETDG---YLLSHLIRDVDQIKQTAEDEAYQNGMLMMRRFIREFPLREEEVLVWMQTEYLG 243 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 + E + + +L L A+ A + + + Sbjct: 244 SKDKE----------KDKRTFGYFIDCLLQFLRDAAVGHTEG------PAWMAEEIVKWN 287 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + P + LL R +L + + + + + + Sbjct: 288 QR--PLRLDQLIIVLLECRDKLSRSYNLPLLADQLIYQM 324 >UniRef50_B7S3H8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3H8_9GAMM Length = 329 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 45/331 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + Q L+ G + HA + +G G GK+ +A LA+ L C CG C Sbjct: 13 LPWQGTTWARFNQQLADGNLPHALVLAGLPGSGKSRLALALARLLLCHAPNGGLNCGKCH 72 Query: 78 NCREIEQGRFVDLIEIDA---ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 +C G D + + K++ R+++ + G K+ ++ ++ + Sbjct: 73 SCEMSAAGSHGDFRWLQPEEKSRAIKIDQVREVVTFTTKTASFGDRKIVVLAPADAMNTN 132 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + N LLK+LEEP +L LP T+ SRC + A ++ R L+ Sbjct: 133 AANGLLKSLEEPSPGTFLILVCDQLHGLPATVRSRCQLIKVPAPSLDSSRAWLDQA---- 188 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + L A+G A AM D ++ +++ Sbjct: 189 --TGDSDESARLLDLADGMPMLA--------------------EAMYQRADGEKLIAI-- 224 Query: 255 AMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR 314 A AA + + A+ Q++ A G+ A + + Sbjct: 225 ----------RAACRGLAAGKLSANQAATMLAEAPMDEALEQMARTARGSIKALDKENLN 274 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + + + ++ + + Sbjct: 275 GQTGRC----LYEFLDEVGKIQRAVRGGANP 301 >UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MFE6_CANTT Length = 698 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 114/328 (34%), Gaps = 68/328 (20%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 + LA + RP+T D GQE +L L N + I ++L G G+GKTS+AR++ Sbjct: 158 ASIPLAHRLRPKTLDDFFGQEKLLGKDGALRNMIQSDIIP-SFLLWGVPGIGKTSLARII 216 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 AK C+ + I+ A K G Sbjct: 217 AKNSRCKFVELSG----------IDSNAKNLKEVFLQAENHKK--------------LTG 252 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + + +DE+H ++ + LL +E+ V L +LSR F ++ L Sbjct: 253 QRTILFLDEIHRFNKAVQDLLLPVIEKGIVTVIGATTENPSFNLNNALLSRVHTFVMEPL 312 Query: 179 DVEQIRHQLEHILNEEH-----------IAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 + E + L L E + I+ + A +A + G R AL++ + A Sbjct: 313 NTESLIKILTRALFEVNRIRKKLYGFHYISLQKDAYHYIANLSMGDSRVALNILETLNAY 372 Query: 228 GDG-----------------QVSTQAVSAML------------GTLDDDQALSLVEAMVE 258 +VS + +L G D + +++ Sbjct: 373 LSADKFKIDNNDTSPKQGVIKVSADLLKPLLKTRNFHQMYDRNGDSHYDIISAFHKSIRG 432 Query: 259 ANGERVMALINEAAARGIEWEALLVEML 286 ++ M + + + G + ++ M+ Sbjct: 433 SDPNAAMFYLVKMLSGGEDPMFIMRRMI 460 >UniRef50_C4L8D9 DNA polymerase III, delta prime subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8D9_TOLAT Length = 319 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 108/297 (36%), Gaps = 30/297 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + R+ HA+L G G+GK+++A A CE TPCG C C+ + Sbjct: 9 WLRFQQVFASKRLPHAFLLVGPAGIGKSALAVQWASLFLCEQPQQNTPCGKCHACQLSGK 68 Query: 85 GRFVDLIEI--DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 D D A V+ R L + +P GR KV +I + ++ + NALLKT Sbjct: 69 QTHPDWHVYGADDAKSIGVDIIRQLSAQLMNSPQLGRGKVAVILQAERMTEAAENALLKT 128 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEPP + +L KL TI+SRC + L+A + +Q L+ L I Sbjct: 129 LEEPPGNSLLILQAESAMKLLPTIVSRCQVWTLQA-EEQQALTWLQQQLPGREIT----- 182 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L R +G+ L ++ G ++ ++A Sbjct: 183 -PALLRLNQGAPLRTLEYLNEG-----------------GEQQRLAVINALDA-YRQQPW 223 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 + +L + + LL +Q A + LA+ Sbjct: 224 TISSLTKCWVSA---MPVTFEWLSRLLLDALKLQQGVVMQQLPFADHPALLSFLAQR 277 >UniRef50_Q0B0V3 DNA polymerase III, delta prime subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0V3_SYNWW Length = 320 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 123/334 (36%), Gaps = 39/334 (11%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 F+ +VGQE + L L G I HAYLF G GVGK S AR A+ + Sbjct: 4 FSSIVGQERASSLLQKSLETGTISHAYLFLGPAGVGKMSCARAFAQAIIGRDDN------ 57 Query: 75 VCDNCREIEQGRFVDLIEIDAA---SRTKVEDTRDLLD-NVQYAPARGRFKVYLIDEVHM 130 D + DL+ ++ S E L+ + P R +V +I + + Sbjct: 58 --DAMVFFREKIHPDLLILEKEEGRSVISKEQISQKLEPWLGLKPYRASQRVAIIRDSQL 115 Query: 131 LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 +S + NALLK LEEPPE+ +L D Q + TI+SRC +L + I L Sbjct: 116 MSNEAANALLKNLEEPPEYAVIILIADD-QNILETIVSRCQLVRFNSLADKDIEQILR-- 172 Query: 191 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL 250 + EP A +GS+ A+ + + S ++ + G Sbjct: 173 ----NREVEPLKAAQAASLGQGSVATAIRFAQEKDYEKIWETSRNIITDLSG-------- 220 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310 E ++ + A + E ++ ++ LL I + Q + + Sbjct: 221 -----------EEIVEVYKSAERMELAPELIVNLLISLLRDINIYQQTRKEELLVLPGSS 269 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD 344 + R + P + ++ + + Sbjct: 270 E-LANSIRQVQPQHLTAALDKIMNLKNYYRSNVN 302 >UniRef50_P38251 Replication factor C subunit 5 n=17 Tax=Saccharomycetales RepID=RFC5_YEAST Length = 354 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 129/335 (38%), Gaps = 28/335 (8%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLA 59 MS + K+RP++ + E + L + R + H L G G GK + L Sbjct: 1 MS--LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALL 57 Query: 60 KGLNCETGITATPCGV---CDNCREIEQG--RFVDLIEIDAASRTKVE--DTRDLLDNVQ 112 + + + R++E +EI + + ++LL V Sbjct: 58 ESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 Query: 113 YAPAR----------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 R+K +I+E + L++ + AL +T+E+ ++++ ++ + Sbjct: 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 Query: 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLT 221 I SRCL A +I L ++ E I E L+ +A+A+ G+LR +L + Sbjct: 178 IAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 Query: 222 DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE----ANGERVMALINEAAARGIE 277 + + +++ ++ S ++ L +V+ + A++ + A I Sbjct: 238 ESMAL--NNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIP 295 Query: 278 WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 +L E+ L + + + + + +++ Sbjct: 296 ANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330 >UniRef50_A8RA91 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RA91_9FIRM Length = 325 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 123/339 (36%), Gaps = 31/339 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L N L R+ HAY+F+G G GK A LLA+ + C+ C C C+ Sbjct: 10 QPIAYQTLENALCQDRLAHAYMFNGPSGTGKKEAAYLLAQSILCDA--EGFACESCAICQ 67 Query: 81 EIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGR-FKVYLIDEVHMLSRHSFNA 138 + + D+I +D +++ K ED L G+ K+Y++D + + N+ Sbjct: 68 RVLHNEYSDMIYLDGSTKAIKKEDIMKLQSAFSKTGLEGKGKKIYILDHAENATVDALNS 127 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP + +L ++ TI+SRC AL + ++ E Sbjct: 128 LLKFLEEPNSDMIAILLVEALDRVLPTIVSRCQIIPFIALGSDVCYNE----AKAEIDDL 183 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + L R + A S T+ V V L + + +E Sbjct: 184 DAYLLSRWIR--QKDAIVAASETED--YQHARFVFQGVVERYLVSPHEALLFLQLEGFPS 239 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA- 317 G + +V+ML I M + + + ++ +A Sbjct: 240 KQK-----------KYGKQAFGYVVDML----NILMKDAFKGSAITQDSWYQKQLTSIAD 284 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356 + + Q + + +L + + ++ + L + Sbjct: 285 KNYDYRKLA---QIFMDTKDKLLRSVNIQLLADQMLYKM 320 >UniRef50_Q4Q084 Replication factor C, subunit 5, putative n=5 Tax=Trypanosomatidae RepID=Q4Q084_LEIMA Length = 351 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 119/382 (31%), Gaps = 57/382 (14%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 ++RP+T DV + L + H LF G G GK + A + + Sbjct: 3 WVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPH-LLFYGPSGSGKKTRAMAMLHEIYGP 61 Query: 66 T-----GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED------TRDLLDNVQYA 114 + + +I I+I+ + + R++ V Sbjct: 62 SVFSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121 Query: 115 PARG-----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 G +KV +++EV +SR + +AL +T+E+ + L +L + SR Sbjct: 122 STSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDALSLTDQA---- 224 CL + + + ++ ++ + E A L LA ++G+LR L + + + Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASALAK 241 Query: 225 --IASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 282 + + L + D V + A+ I E +L Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQT----PKRLHEVRLKFYDLLAQCISGETIL 297 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL-YYQTLLIGRKELPY 341 ++ + ++PA +Q + + Sbjct: 298 KTLV----DSLLAAVAPA------------------------LQRPLIELAAKYDHNMKL 329 Query: 342 APDRRMGVEMTLLRALAFHPRM 363 + +E + + + Sbjct: 330 GTKPILHLEAFVAAVMKLIKQQ 351 >UniRef50_C1F4E5 DNA polymerase III, delta prime subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E5_ACIC5 Length = 368 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 138/387 (35%), Gaps = 56/387 (14%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--- 69 F+D +G E + L ++ GR+ H+ L +G RG GK ++A +LA+ +NC Sbjct: 1 MGFSDFIGNESAVRHLREAVAAGRVPHSLLMAGPRGAGKYTLALMLAQAINCLRQPVTDG 60 Query: 70 -ATPCGVCDNCREIEQ------------------------------GRFVDLIEIDAAS- 97 CG C NC I Q ++ I Sbjct: 61 LPDFCGECANCERIGQAMDLTARVDEAIAAREDLRETDKKETRILVQTHPSVLVIPPDPP 120 Query: 98 --RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 K+ R L+ V P+ R VY+ + + + N+LLK LEEPP H +L Sbjct: 121 QLLIKLGQVRTLIREVYRTPSEARRSVYIFTSASFM-KEAANSLLKVLEEPPSHALIILL 179 Query: 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 +P +L TI SR L A+ EQI L + P L+AR AEG++ Sbjct: 180 AENPGELLPTIRSRTSLIRLGAIATEQIEPLLASRRGDLK----PAERALVARLAEGAVG 235 Query: 216 DALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARG 275 ALS D + Q + L D + E A A G Sbjct: 236 RALSF-DLPAYLTYRNEALQMLRFTLQQNDHSTLFRMTEG-------------YRAGAEG 281 Query: 276 IEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 E L+ L L ++ LS A+ ++ + +A+ I I+ + L Sbjct: 282 QEKTVGLIRTLRSLLEDLLLHLSGASGLVRNIDLQRELSAMAQQIDVEWIERAARGLQSV 341 Query: 336 RKELPYAPDRRMGVEMTLLRALAFHPR 362 + R + ++ A Sbjct: 342 ESGMRRNLLRSISLDAFATDLAASIQH 368 >UniRef50_Q0W3P4 Replication factor C large subunit n=2 Tax=Euryarchaeota RepID=RFCL_UNCMA Length = 553 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 36/287 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 K+RP + AD+VG + + AL G A + G GVGKTS A LA + Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMG- 68 Query: 65 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---GRFK 121 D IE++A+ + + A G + Sbjct: 69 -----------------------WDYIELNASDVRTKDAINRIAGPAAMAGTFEGTGGRR 105 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHV--KFLLATTDPQKLPVTILSRCLQFHLKALD 179 + ++DE L + + + +L D + + LQ +A+ Sbjct: 106 LVILDEADNLHGNYDRGGEAAIINVIRNASQPVILIANDMYAMSKPLRESALQIQFRAIL 165 Query: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 + L + E + +P AL +A LR A++ QA A G GQV+ VS Sbjct: 166 STSVAKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDL-QAAAQGSGQVTVADVS- 222 Query: 240 MLGTLD-DDQALSLVEAMVE-ANGERVMALINEAAARGIEWEALLVE 284 G D + ++ + N + + + E Sbjct: 223 -TGDRDVPETIFKVMGMIFRGKNMREALNATYGLDENPEDLIGWVDE 268 >UniRef50_Q0F3S2 DNA polymerase III subunit delta n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3S2_9PROT Length = 324 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 8/240 (3%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 V+G + V L R+HHA+L G +G+GK +A L L C++ CG C Sbjct: 7 VLGHQRVELRFTEALKQQRMHHAWLLYGMKGIGKRMLAERLTGLLMCDSHND---CGECH 63 Query: 78 NCREIEQGRFVDLIEI---DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 CR + G D+ + + +E R +L + + + G +V ++D+ L+ Sbjct: 64 GCRMLAAGSHPDVYRVGLAEGKRDVNIEQVRQMLGFLSLSGSEGERRVVILDDAERLNHQ 123 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 194 + NALLK LEEP L+ D ++LP TI SRC+ L +R L+ L E Sbjct: 124 AANALLKGLEEPSAGSVLLMVCADLERLPATIRSRCMLQQCMPLAEHDVRRILDASLMEG 183 Query: 195 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 + L+L AEG SL D+ IA D ++ QA+ A L D + + Sbjct: 184 DNKPDVATLELAVELAEGCPGMVASLQDKKIA--DALLAWQALIAQLDHADIGRVDEWIR 241 >UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGG4_ACHLI Length = 412 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 61/340 (17%), Positives = 125/340 (36%), Gaps = 48/340 (14%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP+ F +V GQ+H+L+ L + + +++ G G GKT+IA+L + Sbjct: 2 EPLASRMRPKNFDEVYGQDHLLSKHGVLTKMIEKKKY-LSFILYGPPGTGKTTIAKLFS- 59 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 +D +A++ K + +D+LD Y Sbjct: 60 -----------------------DKSMLDTYFFNASTDNKAK-LKDILDMTAYHDV---- 91 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + ++DE+H + + LL LE + L Q + + I SRC + +KAL Sbjct: 92 -LIIVDEIHRMKTDIQDYLLPFLESGKAIMIGLTTLNPYQSINMAIRSRCHLYEIKALSD 150 Query: 181 EQIRHQLEHILN--EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--QVSTQA 236 + I + + + + I AL + RA+ +R AL+L + A D ++++ Sbjct: 151 KDIEAAILNAIQYLDHDIHLTDDALAAIIRASNSEIRSALNLLESASLVVDDGQKITSNI 210 Query: 237 VSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286 + + G + +L +++ ++ + + + G ++ Sbjct: 211 IRKLAGKPQLSLDDHENHYFEMLSALQKSIRGSDVDASIHYLARLLTLGDLEIIFRRLIV 270 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ 326 I + + IP + I Sbjct: 271 IAYEDIGLANPTMGQKVLAAIQAAKMTGLPEARIPLSVIV 310 >UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellular organisms RepID=B1HUL5_LYSSC Length = 420 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 58/355 (16%), Positives = 110/355 (30%), Gaps = 58/355 (16%) Query: 10 WRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 RP T ++VG + + TAL + + + L G G+GKTSIA +A Sbjct: 1 MRPLTLDEIVGHQDFIGPNTALYKMIQNEHVP-SMLLYGEPGIGKTSIANAIA------- 52 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126 G A+R +D D++ + + +D Sbjct: 53 ------------------GSSQLPFFALNATRAGKKDVEDIVQEARI----SGKVLLFLD 90 Query: 127 EVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRH 185 E+H ++ + LL +E + + I SRC + LK L E + Sbjct: 91 EIHRFNKLQQDTLLPHVENGSIVLIGATTENPYHDVNPAIRSRCGEIYQLKRLTKENLME 150 Query: 186 QLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG----QVST 234 +E L +E ++ +A AA G R AL+L + + D ++ Sbjct: 151 LVEKALADEKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAA 210 Query: 235 QAVSAML-----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + L G+ + +L +++ ++ + + G Sbjct: 211 DHIIDHLISRIGVYGDKKGSHFYNLLSALQKSVRGSDTNAALYYLAHLLETGDLVAVSRR 270 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 ++ I + R+ IP + L + Sbjct: 271 LLVMAYEDIGLANPEVGPHMLAAVQAAERLGLPEARIPLA--SAVIEMCLASKSN 323 >UniRef50_Q0A8S3 DNA polymerase III, delta prime subunit n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8S3_ALHEH Length = 337 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 70/327 (21%), Positives = 124/327 (37%), Gaps = 33/327 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIE 83 L+ L + G++ HA L +G G GK+ + L + L C CG C++CR + Sbjct: 29 LSELLRQAASGQLPHALLLAGPAGTGKSLLGGHLVRALLCHQPGEGGRACGRCESCRALA 88 Query: 84 QGRFVDLIEIDAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 +G D + R V+ R L + + G +++ LID L+ ++ N+LLK Sbjct: 89 RGLHPDFRHLAPEERAVITVDAVRALGRFLNLSARFGGWRIALIDPADTLTVNAANSLLK 148 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEPP +L ++ P +LP TI SRC + E+ L + + R Sbjct: 149 TLEEPPATTLLVLVSSRPAQLPATIRSRCRHLTIPVPPAERALSGLRG----QGLTVTER 204 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L A G+ L+ + + +++ ++ G D + Sbjct: 205 TLA----LAGGAPFRGLAWEEAGLPERLDRLAADLLALHQGRQDPIAL--------ARDW 252 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + L + LL +A Q A A L R LA Sbjct: 253 ADL------------DLPVFLDVLATLLAELARFQAGGAEASRAAPAAPL--RALAAETT 298 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMG 348 PT + + + + + + + ++ Sbjct: 299 PTAVLGHLEAVHEAQYRQGHPLNPQLV 325 >UniRef50_A2E870 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E870_TRIVA Length = 346 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 59/368 (16%), Positives = 117/368 (31%), Gaps = 36/368 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 + RP D+ Q + L + H LF G G GK + + L Sbjct: 5 WIDQHRPHNLDDLTIQSNANELLKSISGSFDFPH-LLFCGPPGSGKKTRVLAFLRKLFNA 63 Query: 66 TGITATP------CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 G ++ F I A L +V + G Sbjct: 64 ELTHLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVVGG 123 Query: 120 F--KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 F KV +I+E H LS+ + AL +T+E+ + + +L ++ + SRCL Sbjct: 124 FSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTPR 183 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + I ++ + ++E+ L L + G+LR A++L + G +V Sbjct: 184 IPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLEMLSMQKKGG----SV 239 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 ++L E + ++ ++ E G + E+ L+ + + + Sbjct: 240 QSILPE-------------WERYTDELVQILIE----GKLQTETIKEIRVHLYELLVHCV 282 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 P + + + I ++ T + +E R + Sbjct: 283 PPTEIL------RRIVHGILHQIDSNLVEKVASTAAFYEARMQQGSKPIFHLEAFCARFI 336 Query: 358 AFHPRMPL 365 + Sbjct: 337 CIYREYFS 344 >UniRef50_O94697 Replication factor C subunit 5 n=2 Tax=Schizosaccharomyces RepID=RFC5_SCHPO Length = 358 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 110/301 (36%), Gaps = 18/301 (5%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 ++RP+T A + + + L + S H L G G GK + + + L Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPH-LLVYGPSGAGKKTRVVAILRELYGP 61 Query: 66 TGITATPCGVC-----DNCREIEQGRFVDLIEIDAASRTKVEDT--RDLLDNVQYAPARG 118 +I + +EI + + ++LL +V + Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121 Query: 119 -----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 FKV +I+ L+R + AL +T+E+ +++ +L K+ I SR L Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181 Query: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + A E+I + IL + + L +A + +LR A+ L + A G Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241 Query: 234 TQAVSAMLGTLDDDQ-ALSLVEAMVEANGE----RVMALINEAAARGIEWEALLVEMLGL 288 A L D + ++M++ V +++ + + I +L E+L Sbjct: 242 LIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF 301 Query: 289 L 289 Sbjct: 302 F 302 >UniRef50_A5UMF4 Replication factor C large subunit n=4 Tax=Methanobacteriaceae RepID=RFCL_METS3 Length = 492 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 122/324 (37%), Gaps = 38/324 (11%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHA---YLFSGTRGVGKTSIARLLAKGL 62 K+RP+T +VVG + + + + L G G+GKT++A+ +A+ Sbjct: 3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIARE- 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLL-DNVQYAPARGR-F 120 F + IE++A+ + + + + ++ G + Sbjct: 62 ------------------------FSEYIELNASDKRSQDVIKSTIGESSSSKSLFGDDY 97 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 K+ ++DEV + + ++ + + +H L+A K ++ ++C + Sbjct: 98 KLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSK 157 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + I L+ I E I P AL+ LA+ + G +R A++ QA+A+ + + + Sbjct: 158 VRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTF-QALANQNEVLELSDI 216 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL-HRIAMVQ 296 + D ++ V A++++ + +A + ++ + + + Sbjct: 217 ENITTKDDRSTIINGVTAVLKSKNP---NHVKKALMVEEDPTLVMEYIAENIPREYTKKK 273 Query: 297 LSPAALGNDMAAIELRMRELARTI 320 A N A R + Sbjct: 274 EIKKAYENIAKADLYFGRARSSRY 297 >UniRef50_C5D4V1 DNA polymerase III, delta subunit n=78 Tax=Bacillales RepID=C5D4V1_GEOSW Length = 344 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 108/349 (30%), Gaps = 46/349 (13%) Query: 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 91 + R+ YL GT T LL + + E + R ++ Sbjct: 9 IKKRRLSSLYLLYGTESFLLTETYELLVRTVLTE------------------EEREFNVS 50 Query: 92 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---SFNALLKTLE---- 144 D + L++ + P G +V LI + + LK LE Sbjct: 51 VYDCEDTP----VQTALEDAETFPFLGEKRVILIKNPYFFTAEKEKEVEHDLKKLESYIM 106 Query: 145 EPPEHVKFLLAT-----TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 P + + +K+ + F L +++R + + + E Sbjct: 107 SPSPFSIVVFVGPYEKLDERKKITKLMKEHAEVFVASPLAEKELREWIVERAGQSGVMVE 166 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQALSLVEAMV 257 A+ L + A +L + D+ I G + + V ++ + LVE + Sbjct: 167 EHAIDTLLKLAGTNLMTLANELDKLILFVGPGGMIQQETVEKLVSRTLEQNVFVLVEKVT 226 Query: 258 EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP---------AALGNDMAA 308 + + + + + E +L + G + V+ A++ N Sbjct: 227 KRQIDDALQVFYDLLENNEEPLKILSLLAGQFRLLYQVKWLAAKGYGQQQIASILNVHPF 286 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRA 356 A ++ + + ++ DR++ +E+ L+R Sbjct: 287 RIKLAMGQAALFSEEELTTVMRQIAEADYKMKSGTMDRQLVMELLLMRW 335 >UniRef50_UPI0001C42945 DNA polymerase III subunit delta'' n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42945 Length = 317 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 124/342 (36%), Gaps = 34/342 (9%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q + L N L G + HAYL G + + K L C C C C+ Sbjct: 7 QPVAVQTLLNSLQRGTLSHAYLLQGANLEEQMRVVLFFLKKLLCGK----EACEGCKVCK 62 Query: 81 EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 +I DLI + A+ K+E R+L + Y FK+ +I++ L+ + NAL Sbjct: 63 QISNMHHPDLICVKTDAATLKIEQVRELQKALSYCNVESDFKMVVIEKADTLTIQAQNAL 122 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK++EEP + F L ++ + T+ SRC LK + EE+I Sbjct: 123 LKSIEEPEQQTIFFLLSSSSNNMLPTVRSRCQLLTLKPVG----------RSGEENI--- 169 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 R +G A + + G S + + + + L+E M+ + Sbjct: 170 --------RLTQGEYSLATAYLYEHYYKGLEAASHEYIHNTV-----QHLIVLIEGMLSS 216 Query: 260 NGERVMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELA 317 E ++ + E A L M LL + L +L + +A Sbjct: 217 QVEGLIHVSKAQGLWPSKSEQIAALSTMQALLQEVMYQVLGLQSLCRLYKDY-PSIETIA 275 Query: 318 RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 R I+ + ++ + +M +E +LR Sbjct: 276 RENELPVIKKAMIGVEEAQRMMRSNTTGQMALEYAVLRLQDA 317 >UniRef50_A5F6P8 DNA polymerase III, delta prime subunit n=35 Tax=Vibrio RepID=A5F6P8_VIBC3 Length = 324 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 24/319 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V GL+ G+I A L + GVG S+ L+A+ L C + + PCG C +C ++ Sbjct: 14 VWQPWQAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQ-SEPCGFCHSCGLMQ 72 Query: 84 QGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D + VE R + Q + +++ +I+ ++ S NALL Sbjct: 73 SGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALL 132 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP + F+L T+ + L TI+SRC + L A + L+ + I Sbjct: 133 KTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWLKG----QGITTPA 188 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ-ALSLVEAMVEA 259 AL L A S + + A ++ +Q ++A+ G ++ ++L++A Sbjct: 189 YALHLCAD----SPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQLKCIALIDA---- 240 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLH---RIAMVQLSPAALGNDMAAIELRMREL 316 + + + + + + + + A+ + + A R+ E Sbjct: 241 DLTTHLYWVWCVL---TDAQKIHFGVQQDYYPPASAALAGRFTYSKLHVQTASLERLMEQ 297 Query: 317 ARTIP-PTDIQLYYQTLLI 334 L Q L Sbjct: 298 LNQFSGLNTELLLLQWLYQ 316 >UniRef50_B3DUA0 DNA polymerase III gamma/tau subunit n=12 Tax=Bifidobacterium RepID=B3DUA0_BIFLD Length = 383 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 133/387 (34%), Gaps = 56/387 (14%) Query: 15 FADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 + +VGQ+ V+ L+ +I ++L G G G++++AR A L E+ Sbjct: 4 WDSLVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAAAL--ESPDHGMS 61 Query: 73 CGVCDNCREIEQGRFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 +++ G D+ + ++ R+++ + PA +++ +I++V + Sbjct: 62 AEPTRVTQQVLAGTHPDVTVLTTNKVTIGIDQVREIITTSEQMPATAPWRIIIIEDVDRM 121 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + N LLK +EEP EH +LL Q + TI SR +L + + L Sbjct: 122 LERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAGFLTSTT 181 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 N E P+ Q AR AEG + A D + V +L A+ Sbjct: 182 NVE-----PKVAQRAARLAEGHIGIAKLYATDERVMSDR---DELVVGVLNLARASDAVL 233 Query: 252 LVEAMVEANGERVMALINEA------------------------------AARGIEWEAL 281 L +++ + A N A+ + + L Sbjct: 234 LAGNLIDNAKAQAEADANRITAGQEAEFRRINGLAPSDRIPPKLRGAFNQIAKKDDVKRL 293 Query: 282 ------------LVEMLGLLHRIAMVQLSP-AALGNDMAAIELRMRELARTIPPTDIQLY 328 L + + +A++Q + ++G + EL+ + Sbjct: 294 VTRRTRDVLDRALNSIASIYRDVAVLQNNAEDSVGLINLENRSSITELSVRLNRAGAVTR 353 Query: 329 YQTLLIGRKELPYAPDRRMGVEMTLLR 355 + RK L + + E Sbjct: 354 LDEVAHARKRLAGNGNPLLVFESLFCT 380 >UniRef50_A2BL93 Replication factor C large subunit n=3 Tax=Desulfurococcales RepID=RFCL_HYPBU Length = 484 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 127/347 (36%), Gaps = 45/347 (12%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLS---LGRIH--HAYLFSGTRGVGKTSI 54 MS K+RP+ DVV QE L GRI A LF G GVGKTS+ Sbjct: 1 MSDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSL 60 Query: 55 ARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--Q 112 A ++LIE++A+ + D + Q Sbjct: 61 VEAAANEYG------------------------LELIEMNASDFRRKSDIERIAKIAATQ 96 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLE---EPPEHVKFLLATTDPQKLPVTILSR 169 ++ + K+ L+DEV +S + L + +H + A + + Sbjct: 97 FSLFGRKRKIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLRDA 156 Query: 170 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L L + L+ I E+I E AL+L+A+ AEG LR A++ QAIA G Sbjct: 157 SLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDL-QAIAEGY 215 Query: 230 GQVSTQAVSAMLGTLDDDQ-ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G V V A+L T D ++ + + + ++++ LL + Sbjct: 216 GVVRVDLVRALLATRDRQYSPWEMLRNLFMSKY--IWQAKRAVTHTDLDYDTLLQWINE- 272 Query: 289 LHRIAMVQLSPAALGNDMAAIEL---RMRELARTIPPTDIQLYYQTL 332 IA+ P + A+ + + R++ + + + Sbjct: 273 --NIAVQYTHPEDIWRAHEALARADIFLGRIKRSLSWDLLPYVFDLV 317 >UniRef50_Q1ISF8 DNA polymerase III, delta prime subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISF8_ACIBL Length = 366 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 140/378 (37%), Gaps = 57/378 (15%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--- 69 F+D G + + L GR HA + SG RG GK ++A+++AK +NC Sbjct: 1 MPFSDFHGNPATVQSAREMLGRGRFPHAVILSGPRGSGKFTLAQMIAKAMNCLEPPMTDD 60 Query: 70 --ATPCGVCDNCREIEQGRFVDLIEIDAASRT---------------------------- 99 CG C NC I Q +D +A Sbjct: 61 GLPDFCGRCSNCERIAQADDLDARFTEAVEAREGLRETDKKETRILVQTHPDVLIIPPDP 120 Query: 100 -----KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 KV+ R ++ ++ Y P +G KVY+ + + + + N+LLK LEEPPE L Sbjct: 121 PQMLVKVDQVRHVIGHIYYKPTQGEHKVYIFPTANFM-KEAANSLLKILEEPPEFATIFL 179 Query: 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSL 214 + +P L TI SRC+Q L+A+ E + L +E R L+AR G + Sbjct: 180 LSENPSSLLATIRSRCVQLRLEAIAPEDVESYL----EKERPEWAARQRALVARLCGGGI 235 Query: 215 RDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 A + D A + Q + + + + D + + E A A Sbjct: 236 GQARTF-DLAAYTAARQDALTLLRSSVAAQDHTELFKVTEG-------------YRAGAE 281 Query: 275 GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI 334 G E L+ L + + LS + + +LA+++ +Q L Sbjct: 282 GKEKTDQLIRASYSLLQDLLYLLSGTPKLVRNTDLGSELTKLAQSVDLGWVQKAALKLGE 341 Query: 335 GRKELPYAPDRRMGVEMT 352 + R + ++ Sbjct: 342 VETGMRRNLLRSLSLDAF 359 >UniRef50_A7K5T9 DNA polymerase III delta prime subunit n=12 Tax=Vibrio RepID=A7K5T9_VIBSE Length = 320 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 114/327 (34%), Gaps = 16/327 (4%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 D + V L GL RI A L +G+G + ++ L C+ + CG Sbjct: 2 LNDYPWLQPVWDNLKVGLESDRIPGALLLQSEQGLGIEKLIEFFSQALLCQN-YASEACG 60 Query: 75 VCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C +C+ + DL I V+ R Q + +++++I+ + Sbjct: 61 FCHSCQLNQSHNHPDLHWIKPEKEGKAITVDQVRACNRLAQESSQLNGYRLFVIEPADSM 120 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 + + NALLKTLEEP FLL T + ++L TI SRC + + EQ + Sbjct: 121 NESASNALLKTLEEPGAKCLFLLVTHNQERLLPTIRSRCQHWVVAPPSTEQAMQWMREQG 180 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALS 251 ++ + GS L + + AM + Sbjct: 181 AQQ-------VPAYALKLNMGSPIKTLDALNNGDLDAYLAFERTFIKAM--SSPASDISE 231 Query: 252 LVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 +++ + E+ + + + + E +L Q + A + Sbjct: 232 -CASLMAKHSEQSLDWAWYLLTDAQKVQFGVSE-AQMLPGAIKFQPNNYNGLYSSAKALM 289 Query: 312 RMRELARTIPPTDIQLY-YQTLLIGRK 337 ++ + P +++L L+ R+ Sbjct: 290 DLKAQVQAFPGLNLELLSMNWLIESRE 316 >UniRef50_A0AEX9 Complete genome n=16 Tax=Listeria RepID=A0AEX9_LISW6 Length = 330 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 120/335 (35%), Gaps = 23/335 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNC 79 Q V+ + + R+ H YL G+ G GK A LA+ L C CG C NC Sbjct: 11 QPVVMKIFSKSVRENRLSHGYLLEGSSGTGKKRTALWLAQSLFCLERTETELACGKCANC 70 Query: 80 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 I D+ ++ K++ R L + KV +I + ++ S N+ Sbjct: 71 MRIASHNHPDVHLLEPDGASIKIDQVRALKQELSKRGMESDQKVVIIYDAEKMTVQSANS 130 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK +EEP + L TT+P ++ TI SR K+L + + QL E Sbjct: 131 LLKFIEEPEGGLLLLFLTTNPGQILPTIQSRLQPVTFKSLTFDSLLSQLTAAGISEQK-- 188 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVE 258 + + GS+ A + + S V V + + L+ +++ Sbjct: 189 -----ARIYASITGSIEQAKAFEEDDWFSEARNV----VIKLYEGMHHQGTSPLI--IIQ 237 Query: 259 ANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 + + ++ A L + L L A + + + A Sbjct: 238 ESWMPLFKEKDKMALGLELLLLLYRDRLHLTLD--------ENYEPICTAQKEILGQDAL 289 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ + +L + +L + ++ +E + Sbjct: 290 RKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLV 324 >UniRef50_B5IA48 AAA ATPase central domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IA48_9EURY Length = 437 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 95/297 (31%), Gaps = 31/297 (10%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANG---LSLGRIH-HAYLFSGTRGVGKTSIARLLA 59 K+RP+ D+VG + + G+ A + G G GKT+ AR LA Sbjct: 3 IPWVEKYRPKRLRDIVGNTQAINEILRWAEEWEAGKPSYKALILVGKPGCGKTTTARALA 62 Query: 60 KGLNCETGITATPCGVCDNC-REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 + + ++I + D +G Sbjct: 63 NEMGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFIS--------------TRKG 108 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK-----FLLATTDPQKLP-----VTILS 168 K+ + DE L + + E +K +L D + + S Sbjct: 109 GRKLIIFDEADNLYEGVKDGDRGGKKAIVETIKASKQPIILIGNDYYSITGGTWGKVLKS 168 Query: 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228 +A++ QI L I E I + L+ +A + G LR A++ QAIA G Sbjct: 169 VAKVVKFRAVNRAQIVKVLRRICAAEGIKCQDEVLKYIAGKSGGDLRAAINDL-QAIAEG 227 Query: 229 DGQVSTQAVSAMLGTLDDDQALS-LVEAMVEANGERVMALINEAAARGIEWEALLVE 284 V+ V+A+ ++ + + + +++N + E Sbjct: 228 KKVVTEDDVAALGYRDVKNEIYKTTLVILHTEHFWEAKSMLNNLDETPDFVMLWIDE 284 >UniRef50_C6XHE7 DNA polymerase III subunit delta' n=2 Tax=Rhizobiaceae RepID=C6XHE7_LIBAP Length = 347 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 128/339 (37%), Gaps = 44/339 (12%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC- 76 + G E + L+ GR+HHA LF G +G+GK ++ A + + P +C Sbjct: 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 Query: 77 -DNC----REIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPARGRFKV 122 D C +++ D + + + V++ R + + G ++V Sbjct: 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRV 133 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 +ID V ++R++ NALLK+LEEPP+ V F+L + + TI SRCL +L Sbjct: 134 IMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENN 193 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 L L + I + AA GS+ A+ + ++ Sbjct: 194 ----LYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKIL----HYDCDKI---------- 235 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAAR--GIEWEALLVEMLGLLHRIAMVQLSPA 300 S ++ + E + + + A + + ++ + + + + + A Sbjct: 236 ------ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILK-EICKSAKA 288 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKEL 339 A + ++ ++ + + R+++ Sbjct: 289 AALSGQLEEADQIAQI--YFSLVKRVHAFSMYNLDRRQM 325 >UniRef50_Q5P0G2 DNA-directed DNA polymerase III, delta subunit n=3 Tax=Rhodocyclaceae RepID=Q5P0G2_AZOSE Length = 353 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 130/367 (35%), Gaps = 50/367 (13%) Query: 21 QEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDN 78 + ++LG R+ HA LF G G+GK +A LA L C T C C Sbjct: 3 HPWLQETWQRLVALGERLPHALLFVGPAGLGKRDLADALAARLLCATPRPDGCACDRCTT 62 Query: 79 CREIEQGRFVDLIEIDAA--------------------------SRTKVEDTRDLLDNVQ 112 C+ G DL I A ++ +E RDL ++ Sbjct: 63 CQLRRSGNHPDLFMIVPAADMEAGNGDESREGGERDIGSAKKKSTQIVIEQIRDLQQSLS 122 Query: 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + +V ++D ++ ++ NALLK LEEPP F+L ++ P++L TI SRC Q Sbjct: 123 VTGHQSGRRVIVVDPAEAMNPYTANALLKLLEEPPAGCLFVLVSSAPRRLLPTIRSRCQQ 182 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + + + L E A LLA G A L Q G G + Sbjct: 183 WSFSQPATDVVGQWLGTQ--------EAPAADLLA-LTGGMPLAAQRLAGQ----GAGAL 229 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + V + D + A EA A G L+ M + + Sbjct: 230 LARFVRDVAQLPATDP-------LQLAGQWEAWLKSKEALAAGFGIVQLVEWMQRWVTDL 282 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A ++L E +R LA+ + Y R+ + + R+ +E Sbjct: 283 ASLRLGG--RVRFFPREEEVVRALAQRSNVAAVLNCYNEFARIRRVAQHPLNARLMLEDM 340 Query: 353 LLRALAF 359 LLR Sbjct: 341 LLRYARA 347 >UniRef50_A6R5J4 Activator 1 subunit 3 n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R5J4_AJECN Length = 366 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 27/225 (12%) Query: 7 ARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 K+RP T D V + N L + R+ H L G G GKTS LA+ + Sbjct: 74 VEKYRPNTLEDAVPNAPNIDW-TNPLFVQRLPH-LLLYGPPGTGKTSTILALARRIYGVK 131 Query: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-----PARGRFK 121 + ++E++A+ ++ ++ +Y+ G FK Sbjct: 132 NMR------------------QMVLELNASDDRGIDVF--VIHPFRYSLSNSESTLGAFK 171 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + ++DE ++ + AL + +E+ + +F + KL +LSRC +F L E Sbjct: 172 LIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEE 231 Query: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 IR ++ ++ +E + +P A+ L + ++G +R AL++ A Sbjct: 232 DIRVLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHA 276 >UniRef50_D1JAL6 Putative replication factor C, large subunit n=1 Tax=uncultured archaeon RepID=D1JAL6_9ARCH Length = 466 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 33/288 (11%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAK 60 S + K+RP+ ++VVG E + L + + A + G G GKTS A LA Sbjct: 4 SSEEWTEKYRPKKLSEVVGNEKAIEELNSWADGVAKSKKAVILLGPPGCGKTSAAYALA- 62 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 R ++IE++A+ + R ++ + R Sbjct: 63 -----------------------SERDWEVIELNASDQRNAGVIRSIVGPASASNTFSRA 99 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQKLPVTILSRCLQFHLKA 177 ++ ++DE + + K + E + +L D + T+L C + + Sbjct: 100 TRLIILDEADNIHGNEDRGGTKAITEIVKRSTQPIILIANDKLGMGRTLLRNCKLINFQR 159 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 + + L+ I N E + L ++A+ A G LR A++ AI+ + ++ ++ Sbjct: 160 IKPGTVFRVLKVISNAEGRDIDDEVLLIMAKNANGDLRSAINDL-LAISMSELKIEAGSI 218 Query: 238 SAMLGTLD-DDQALSLVEAMVEA-NGERVMALINEAAARGIEWEALLV 283 G D ++ ++++ + + + + + E + Sbjct: 219 --ATGERDVEEDIFAVLKKIFGGYDMQEALTSLYGLDKTPEESIQWIH 264 >UniRef50_Q1WU44 DNA polymerase III, delta subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WU44_LACS1 Length = 340 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/359 (11%), Positives = 107/359 (29%), Gaps = 48/359 (13%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L + + + YL G + K L + RE Sbjct: 3 VDELRKEIENNSLKNVYLVLGED-----TYLNNKVKELFWNYIPESD--------REFNA 49 Query: 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------SF 136 + + + AP ++ +I + L+ Sbjct: 50 AIYDMETT----------SIATAIADAISAPFFSEKRLVIITHPYFLTGDTKKHSIEQDV 99 Query: 137 NALLKTLEEPPEHVKFLLAT-----TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 N L+ L+ P ++ +K+ + S+ +L+ +IR L Sbjct: 100 NELIGYLQNPSPDTLLVVLASYDKLDSRKKVVKELKSKAEIVDTSSLNESEIRQYLIKYC 159 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQA 249 + + + E RA+ L + + ++ + I + +++ V ++ + Sbjct: 160 DGKKVIIEKRAIDRLIQLTNANFSKIMNELSKLIIATVDTKKITVSEVDGLVTKSLEQNV 219 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP---------A 300 LV+ + + + L +E + E + ++G + V++ A Sbjct: 220 FDLVDFVRDKKIKEAFELYHELLEQKEEPIKINAILIGQFRLLLQVKILQKHSYDQGSIA 279 Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRALA 358 + + AR ++ Y L ++L + + + ++ L + Sbjct: 280 STLKVHPFRVKLAMQNARKFSNNSLKSAYLGLAEIEEKLKTSSQNPELLFQLFLTKYAY 338 >UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJI8_AYWBP Length = 414 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 116/350 (33%), Gaps = 49/350 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLT----ALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 M + LA RP T D++GQ H++ ++ L + +F G G+GK+S+A+ Sbjct: 1 MFKKPLAFALRPSTITDIIGQSHLINDQNGIISRMLKNNY-ASSLIFYGVPGIGKSSLAQ 59 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 +LA L + I + L+ + Sbjct: 60 VLANDLQIKYDIFNAAIDK-----------------------------KSKLEKIIQQAL 90 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 + + +I+E+H +++ + LL+ LE + + +I SR L+ Sbjct: 91 NFKKFILIIEEIHRMNKDRQDILLQYLENGHLIMFACTTENPYFVINPSIRSRVNIIKLE 150 Query: 177 ALDVEQIRHQLEH--ILNEEHIAHEPRALQLLARAAEGSLRDALSLTD-QAIASGDGQVS 233 + E++ L + + + AL L+ + + G LR A+++ + +++ Sbjct: 151 RITTEEMLTGLNKLIVNKKLPLNILQDALLLICQLSSGDLRIAINMLELCLHLYPGEEIT 210 Query: 234 ----------TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 ++ + +L +++ ++ + + A G + Sbjct: 211 KKIIKKISSSANLINFKDNDEHHNLKSALQKSIRGSDVDAALHYFARLLASGDHEALIRR 270 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 ++ I + ++ IP + L Sbjct: 271 MLITAYEDIGLANPMIIIHVKTAIDAFRQIGLPEGRIPLG--LAIIEMCL 318 >UniRef50_Q5GQL5 Sliding clamp loader gp44 n=6 Tax=root RepID=Q5GQL5_BPSYP Length = 315 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 119/334 (35%), Gaps = 38/334 (11%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 ++RP++ D + + + + G I + L +G+ GVGKT+IA+ + + + Sbjct: 8 WVEQYRPKSVDDCILPTSIKNSFKAFVEQGEIPN-LLLTGSAGVGKTTIAKAVCEQIGAS 66 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125 I + +D R V KV +I Sbjct: 67 Y---------------IVINGSDEGRFLDTVRNR----VRQFATTVSLTS-GAPHKVVII 106 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIR- 184 DE + +L +EE + +F+ K+ + SRC + ++ Sbjct: 107 DEADNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQIL 166 Query: 185 -----HQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 +L+ IL++ I ++ + + L + R ++ + A+ G++ T Sbjct: 167 QGQFFVRLKGILDDNKIVYDDKIIAKLIKRYYPDWRRLINEAQRHAAT--GKIDT----G 220 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299 +L + D L+ A+ V + E + ++ ++ LL+ + P Sbjct: 221 VLVDIADINLDQLLSALKNKEFTTVRKWVVENIDN--DPNIVMRKIYDLLYENIKPKYIP 278 Query: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLL 333 A+ +A + ++ +A ++ ++ Sbjct: 279 EAVL-ILAKYQYQIAFVADQ--EINLLACLTEVM 309 >UniRef50_C5SNN8 DNA polymerase III, delta prime subunit n=2 Tax=Caulobacteraceae RepID=C5SNN8_9CAUL Length = 336 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 16/230 (6%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 P+ D + E TA + LS GR+HHA+L G GVGK ++A A+ L Sbjct: 13 PRQVFDFIQGEAQETAFLDALSRGRLHHAWLLCGPEGVGKATLAYRAARYLMGHQRDRGF 72 Query: 71 ---TPCGVCDNCREIEQGRFVDLIEIDAA-------SRTKVEDTRDLLDNVQYAPARGRF 120 + R I DL+ ++ V+ R++++ AP+R + Sbjct: 73 GILGMSEEDPDARLIVAQSHPDLLVLEREQKDGKTRKNITVDAVREVVEFFSKAPSRSAY 132 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 +V ++D V L+ +S NALLK LEEPPE L + P KL TI SRC + D Sbjct: 133 RVCIVDAVDDLNINSANALLKILEEPPERGLLFLISHSPGKLLATIRSRCRRLGFSPWDD 192 Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 E ++ + + P L+ L A+GS L L ++ D Sbjct: 193 EAVQRFISARAD-----LSPEQLERLVVMAKGSPGKGLRLWEEGALEMDE 237 >UniRef50_A0CIK7 Chromosome undetermined scaffold_19, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CIK7_PARTE Length = 356 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 59/381 (15%), Positives = 123/381 (32%), Gaps = 42/381 (11%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Q+ +P++ + + L H LF G G GK + K Sbjct: 1 MLQQLWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPH-LLFYGPNGAGKKTRVLAFLK 59 Query: 61 GLNC----------ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 + + +C + +D+ DA KV + L+ Sbjct: 60 EVYGSGVYTVTEEEKEYKINETSNTTTSCTVLSSKFHIDVAPSDADHHDKV-IIQKLIKE 118 Query: 111 VQYAPARG-----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 V + FKV +I+EV L++ + +L +T+E+ E + +L K+ Sbjct: 119 VASSHQVNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINP 178 Query: 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI 225 I SRCL + A D Q+ L+ I + + + + +A A+ G+LR+A+ Sbjct: 179 IRSRCLLIRVPAPDQTQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQSTR 238 Query: 226 ASGDGQVSTQAVSAMLGTLD--DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + Q ++A L + + +V+ + + + + I + ++ Sbjct: 239 VNNTCIKDDQNIAAQEWKLHIQHNIVMPIVKNQLVETMKEIREKFYQLLVNCIPVDRIMF 298 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 EML + N ++ + ++ Sbjct: 299 EML-------------QGVLNQYKDHANKII----------LYELIKSTAKCENRARQGS 335 Query: 344 DRRMGVEMTLLRALAFHPRMP 364 + +E + + Sbjct: 336 KGIVHLEALAAEYMTIIKQFA 356 >UniRef50_B7XHX1 Replication factor C subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHX1_ENTBH Length = 349 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/370 (14%), Positives = 125/370 (33%), Gaps = 38/370 (10%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP+ + H +TAL +L + + +F G+ G K ++ L L Sbjct: 3 WIEKYRPKELNAINTH-HDITALLQCFTLRTVPN-LIFYGSVGSNKKTLVFSLINSLYKA 60 Query: 66 TGITATPCGVCD---NCREIEQGRFVDLIEIDAASRTKVE--DTRDLLDNVQYA------ 114 + ++ D+I I+ + + ++++ V + Sbjct: 61 YPQFQKITTELQINGSRIDVSYLESNDVILINPSIYKNKDRVVVQNIIKKVAESKPITSF 120 Query: 115 --PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 + ++ LID+ L++ + AL T+E+ + K + T+ + I SR L Sbjct: 121 LNSSFHGYRTILIDQAENLTKDAQAALRITMEQYSSYFKIFMICTNINTIIEPIKSRSLL 180 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + ++ LE I +E L+ +A + G A+SL + + Sbjct: 181 IRCRQFAENELITILETISLKEGYNISLDILKDIAINSNGDCGRAISLLE---------I 231 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 Q V ++ E++ A+++ E + ++ L+ I Sbjct: 232 YCQTVKQAETKKLKMDLMNF----KVEWEEKLDAIVHLIREAKAENMFRIRQL---LYDI 284 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 + + P+ + M + ++ + + L ++ + +E Sbjct: 285 MIWNIEPSLVLLKMHNLMQKVIRTSNK-------QITELALKFQERIYLGTKPIFHLEAY 337 Query: 353 LLRALAFHPR 362 + + Sbjct: 338 AANLMMVCSQ 347 >UniRef50_Q8SR43 DNA REPLICATION FACTOR C 38kDa SUBUNIT n=1 Tax=Encephalitozoon cuniculi RepID=Q8SR43_ENCCU Length = 354 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 114/334 (34%), Gaps = 33/334 (9%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP++F +++G+E L +L I H + G G GK ++ L L Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLK-SYTLETIPH-MIVHGRSGHGKKTVLLCLVNHLYGS 60 Query: 66 TGITATPCGVCDN---CREIEQGRFVDLIEIDAASRTKVE--DTRDLLDNVQY------- 113 + E+ + +EI + + + ++ + Sbjct: 61 IPEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSM 120 Query: 114 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 R K+ +I L+ + AL +T+E ++ +L + +L I SRC Sbjct: 121 LARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCF 180 Query: 172 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 + E + + IL +E+ L + R + G +R AL + + + + Sbjct: 181 FLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNE- 239 Query: 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGE---------RVMALINEAAARGIEWEALL 282 ++A A +G D L + + + + I +L Sbjct: 240 --SEAKRAKIGGRDLKLEWELAVMSIAGVVKCNQTSSGLVEIRKTLYMLLNSCIPPRTIL 297 Query: 283 VEMLGLLHRIAMVQLSPAALGNDMA--AIELRMR 314 VE+ L + + + L E R+R Sbjct: 298 VEL---LRNLILGEDFRTFLLLSQHALKYEERIR 328 >UniRef50_C2MDV0 Putative DNA polymerase III, delta prime subunit n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MDV0_9PORP Length = 362 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 133/393 (33%), Gaps = 74/393 (18%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 FAD+ G + + A+ G++ HA L G +A A+ + C++ Sbjct: 1 MQFADIYGYQALKQQFAHLTHSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSPTDEDS 60 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASR---------------------------------- 98 CG C +C+++ D+I + + Sbjct: 61 CGACASCKKVAAIAHPDVIFVYPVVKAAQDETPTERYFDEWRTFLERSPYITDQDWLEVL 120 Query: 99 --------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 150 V + LL + G ++ +I + ++ + N LLK+LEEPP Sbjct: 121 EAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEPPAET 180 Query: 151 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 F+L + +L TILSR +F L + + + L H AL+ + Sbjct: 181 LFILVSAHSDRLLDTILSRVQRFELPPMTEAE----MREALTAMHPELATDALEAMIPLV 236 Query: 211 EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 +G+L DAL L D + + Q Q D + L E + +A E +A + Sbjct: 237 DGNLSDALRLLDSSASQDKLQELAQQWYDATLRADILRLKLLSEEVDKAGREGAVAFLKL 296 Query: 271 AAAR-GIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYY 329 + G +W L E R+ EL + + Y Sbjct: 297 LMQQVGQQWHRALRG-------------------------EARVGEL--RVNNKAMGACY 329 Query: 330 QTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + L +E+ +M + T LR L Sbjct: 330 RLLEEAMREIRGNVLTKMVLFDTFLRMLLALRN 362 >UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria RepID=Q2J818_FRASC Length = 519 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 74/451 (16%), Positives = 131/451 (29%), Gaps = 86/451 (19%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T +VVGQ H+L + L + G L G G GKT++A ++++ Sbjct: 52 PLAARLRPRTLDEVVGQRHLLGPGSPLRRLVEGGATTSVVL-WGPPGTGKTTLAHIVSRA 110 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 + A V+D R ++D + G Sbjct: 111 TGRRFRELS-------------------------AVTAGVKDVRAVIDEARETLSTSGAR 145 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDEVH +R +ALL ++E + + +LSR L L+ L Sbjct: 146 TVLFIDEVHRFTRTQQDALLPSVERGWVTLVAATTENPFFSVVSPLLSRSLLLTLEPLTD 205 Query: 181 EQIRHQLEHILNEE-----HIAHEPRALQLLARAAEGSLRDALSLTD------------- 222 + IR L L + ++ A + + R A G R AL+ + Sbjct: 206 DDIRGVLTRALRDPRGYDGRLSVSDEAREHVVRLAGGDARRALTTLEAGAEALLEAHECE 265 Query: 223 -----------------QAIASGDGQVSTQAVSAML----------GTLDDDQALSLVEA 255 +A + ++ + + G D + +++ Sbjct: 266 SGPGGKAGAGADAGADAEAFVNPRPRLDLDLLERAVNRAAVRYDRSGDQHYDVISAFIKS 325 Query: 256 MVEANGERVMALINEAAARGIEWEALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMR 314 M + + + + G + + M+ L I M + + + Sbjct: 326 MRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDIGMADPGALGVAVAASQALEFV- 384 Query: 315 ELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQS 374 +P + L L AP + P P R + Sbjct: 385 ----GLPEARL-----ALAQAVIHLALAPKSNAVIRAIDAATSDVRAGRAGPVPAHLRDA 435 Query: 375 FAPVAPTAVMTPTQVPPQPQSAPQQAPTVPL 405 A P P Sbjct: 436 HYRGARRVGHGAGYRYPHEAPGNVVRQQYPP 466 >UniRef50_C8XUP3 Gp44 clamp loader subunit DNA polymerase accessory protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUP3_9CAUD Length = 329 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 111/322 (34%), Gaps = 45/322 (13%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLS--LGRIHHAYLFSGT-RGVGKTSIARLLA 59 K+RP +++ + V + ++ G I + LF G GKT+ A + Sbjct: 10 QYAWENKYRPDNLDEIIIPQDVRAKIHGYITSGNGNIP-SMLFYSPQPGTGKTTSALAVC 68 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG 118 + C+ + I+A+ ++ RD ++ G Sbjct: 69 NEIGCKQP-----------------------LMINASLDNSIDVIRDRVIQYSTGVSVFG 105 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 KV ++DEV LS + +L +E+ ++ F+L T Q++ + SRC + Sbjct: 106 GRKVVILDEVERLSMAAQESLKGIVEKVSKNCSFILTTNAKQRVNEPLRSRCREIDFIWN 165 Query: 179 DVE------QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + E Q + IL E + ++P L + + R + + G++ Sbjct: 166 ETEADEVKLQFMRRCAEILRSEGVEYDPPVLAAIVKRHFPDNRRIMGALQDNVT-TYGKI 224 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292 + A+L + D + +++ + + + + + + + Sbjct: 225 D-ERALAVLKSADMGVLVDMLK---GNDWAGMKQWVTD------NQNYITEDFYSRFFQF 274 Query: 293 AMVQLSPAALGNDMAAIELRMR 314 + Q + +I + Sbjct: 275 CVPQDKEKPMLVQNESIPDLVC 296 >UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellular organisms RepID=D0LV62_HALO1 Length = 463 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 103/318 (32%), Gaps = 58/318 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVL--TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 Q LA + RP++ + VGQ H+L L L G + + G G GKT++A +LA Sbjct: 15 QPLAERMRPKSLQEFVGQNHLLGPRKLLARLGPGAALPSLILWGPPGTGKTTLAHILATR 74 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 + A V + R L+ G Sbjct: 75 AGSRLAAIS-------------------------AVTAGVREMRQLVSEAGDRRDQFGSR 109 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+H S+ +ALL +E + + +LSRC L AL Sbjct: 110 TVLFIDEIHRFSKAQQDALLPHVEAGTVTLIGATTENPSFHVNAALLSRCRVLRLGALSD 169 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---- 229 E++ L++ ++ L L + G R L+ + A++ Sbjct: 170 EELGALARRALSDRERGLGRAAVSVSDEVLTDLVAQSGGDARRMLNALEVAVSLVRGGEG 229 Query: 230 ---------GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINE 270 + +A+ L G + +++M ++ + + Sbjct: 230 EGEDEDEAPRALGREAIEEALQQKTLLYDKAGDEHFGVVSAFIKSMRGSDPDAAAYWMTR 289 Query: 271 AAARGIEWEALLVEMLGL 288 G + +L M+ Sbjct: 290 MLEAGEDPLFVLRRMVVF 307 >UniRef50_A6URV8 Replication factor C large subunit n=12 Tax=Methanococcales RepID=RFCL_METVS Length = 492 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 45/266 (16%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL----GRIHHAYLFSGTRGVGKTSIARLLAKG 61 K+RP++ DV G AL + + LF G G GKT++A +A Sbjct: 4 WVEKYRPKSLNDVAGHSKTKEALCYWIESFIRGNKQKPVLLF-GPPGSGKTTMAHAIAND 62 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-PARGRF 120 N D+IE++A+ + + ++ + G+ Sbjct: 63 YN------------------------FDVIELNASDKRNKDVISQVVGTAATSKSLTGKR 98 Query: 121 KVYLIDEVHMLSRHSFN-------ALLKTLEEPPEHVKFLLATTDPQK-LPVTILSRCLQ 172 + ++DEV LS + +LK E P +L D K ++ + Sbjct: 99 TLIVLDEVDGLSGNDDRGGVSEIIKVLKNAENP-----VILTANDVYKPALSSLRNSVTM 153 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 ++ I L I +E + + ++L++ A G LR A++ G + Sbjct: 154 VDAGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQ--ALLTGGSI 211 Query: 233 STQAVSAMLGTLDDDQALSLVEAMVE 258 + + + + +++ Sbjct: 212 EIEDAKNLPDRDSEKSIFDAIRIIMK 237 >UniRef50_P43748 DNA polymerase III subunit delta' n=23 Tax=Pasteurellaceae RepID=HOLB_HAEIN Length = 327 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 32/330 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + +A G HHA L G+G S+ LA+ + C PCG C +C ++ Sbjct: 11 IYHQIAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIMC-VAQGDKPCGQCHSCHLMQ 69 Query: 84 QGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 D E+ V+ RD+ + V + KV + L+ + NALLK Sbjct: 70 AHSHPDYHELSPINGKDIGVDQVRDINEMVAQHAQQNGNKVVYVQGAERLTEAAANALLK 129 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 TLEEP + FLL L TI SRC ++L + E L+ E+ Sbjct: 130 TLEEPRPNTYFLLQADSSASLLATIYSRCQVWNLSVPNEEIAFEWLKSKSAVEN----QE 185 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 L LA G AL + Q +E + + Sbjct: 186 ILTALAMNL-GRPLLALETLQEGFIEQRKNFLRQFWVFYRRRSP-------LELLPLFDK 237 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 ER + + +L L +L + A + + + + Sbjct: 238 ERYVQQV--------------DWILAFLSDCLKHKLEIDSHRQV-ADLGRGIEQFSDEQT 282 Query: 322 PTDIQLYYQTLLIGRKELPY--APDRRMGV 349 + + + R +L + + + Sbjct: 283 ALGLLQAIKIMQKVRSDLLTINGVNVELML 312 >UniRef50_Q5JHP1 Replication factor C large subunit n=7 Tax=Thermococcaceae RepID=RFCL_PYRKO Length = 499 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 107/334 (32%), Gaps = 54/334 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHH--AYLFSGTRGVGKTSIA 55 M+ K+RP+ +++V QE L + + G A L +G GVGKT+ Sbjct: 1 MTEVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTV 60 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 115 LA E +IE++A+ E + Sbjct: 61 YALANEYGFE------------------------VIELNASDERTYEKIERYVQAAYTMD 96 Query: 116 ARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 G R K+ +DE + + K +++ +++ ++P I ++ Sbjct: 97 ILGKRRKLIFLDEADNIEPSGAREIAKLIDK--ARNPIIMSANHYWEVPREIRNKAQIVE 154 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 K L I L IL E + L +A+ A G LR A++ + G Sbjct: 155 YKRLTQRDIIKALVRILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQTVVTGG-----V 209 Query: 235 QAVSAMLGTLDDDQ-ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + +L D ++ + + + + + A G++ E+L + Sbjct: 210 EDAVEVLAYRDTEKSVFQALAQLFATDNAKR----AKLAVLGVDMMP--NELLQWI---- 259 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + + + DI L Sbjct: 260 ------DENVPYVYYRPEDIARAYEALSRADIYL 287 >UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4 Tax=Eukaryota RepID=B6KHT5_TOXGO Length = 1101 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 21/231 (9%) Query: 4 QVLARKWRPQTFADVVGQEHVLT----ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 LA + RP + + VGQ + ++ L G + + + G G GKT+IA L Sbjct: 603 VPLAERLRPASLEEYVGQRGCIQGGRGSIRELLEAGHLP-SLILWGPPGCGKTTIALLAG 661 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARG 118 + + + + P + + +A V D R ++ Sbjct: 662 RSVGKKNSALSLP---------------PPVFKKMSAVTCGVNDVRKVVQEALTLRATTK 706 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + V +DE+H ++ +ALL +E + ++ +LSRC L+ L Sbjct: 707 QKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRALLSRCRVCKLEPL 766 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 E + L+ EE++ A++++ R A+G R AL++ + AI Sbjct: 767 TEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHER 817 >UniRef50_O64301 DNA polymerase accessory protein 44 n=13 Tax=T4-like viruses RepID=DPA44_BPR69 Length = 320 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 122/340 (35%), Gaps = 43/340 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L +K+RP + + + + + +S G++ H L S + G GKT++A+ L +N E Sbjct: 11 LEQKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINAE 70 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYL 124 ++ ++ + K++ R L + G+ KV + Sbjct: 71 ------------------------MMFVNGSD-CKIDFVRGPLTAFARSVSMEGKPKVIV 105 Query: 125 IDEVHMLS-RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ- 182 IDE S L +EE + ++ + + + SRC E Sbjct: 106 IDEFDRSGLAESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDK 165 Query: 183 ------IRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + H++ I E+I + + + L + R + DQ V Sbjct: 166 ISMMKKMIHRMVEICKNENIEIADMKVVAALVKKNFPDFRRTIGQLDQ---YSSKGVLDA 222 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 + +++ T D ++EAM + +++ AL + AA ++ + +++ + + Sbjct: 223 GILSIV-TNDRGTVSDVIEAMKNKDIKQLRALAPKYAA---DYSWFIDKLVSECYD-QVA 277 Query: 296 QLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 ++A + LA I + + Q Sbjct: 278 PGKSIISLYEIAGENNKFHGLASNIELHVMYMLLQLTCEL 317 >UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H148_9FIRM Length = 411 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 123/351 (35%), Gaps = 50/351 (14%) Query: 11 RPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 RP+ D +GQEH L + N + GR A F G G GKT++AR++AK Sbjct: 9 RPERLEDFIGQEHFLKKNALVYNAIKEGRFESAV-FYGPSGTGKTTLARIIAK------- 60 Query: 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV--QYAPARGRFKVYLI 125 + I+I+AA + + + +L ++ + + Sbjct: 61 -----------------MQDDSFIQINAAD-VGISELKKILAEAKDRFYGIISKSTYLYV 102 Query: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIR 184 DE+H ++ ++LL LEE V ++ ILSR + K L + I Sbjct: 103 DEIHRWNKSQQDSLLSALEEGYIKVIASTTENPFFEINNQILSRIRNIYEFKPLANDDIV 162 Query: 185 HQLEH---ILNEEH--IAHEPRALQLLARAAEGSLRDALSLTDQAI--ASGDGQVSTQAV 237 L+ I + I ++ AL L+A + G R AL + G+ +++ + V Sbjct: 163 KLLKRGVDIFAGDGRVIDYDEDALMLIAEKSNGDARIALDTLGFILNSLKGEDRITEEKV 222 Query: 238 SAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 + + +L ++M ++ + + + G + + + +L Sbjct: 223 YEITYDRQYMKFNKLDDKYNVFSALHKSMRGSDPDAAVHYLARLLQGGEDVKVIGRRLLV 282 Query: 287 GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK 337 + + + + IP + + R Sbjct: 283 AASEDVGLAYPQAIGIVRSCVEAAHMLGMPEARIPLSQAVVLISLAPKSRS 333 >UniRef50_C2D911 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D911_9ACTN Length = 378 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 125/365 (34%), Gaps = 37/365 (10%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q HV + + ++ HAYLF G G+G + LAK L C G C C+ Sbjct: 18 QAHVCSFFKQAYAQRQLSHAYLFIGNYGLGISEALDELAKMLLCPHGG-----DECACCK 72 Query: 81 EIEQGRFVDLIEIDAASRTK--VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNA 138 I D+ + VE DLLD V AP + + K+ +I E L NA Sbjct: 73 RIMHKSHPDVHQFYPQGAQGYVVEQIHDLLDVVHRAPIQAKRKLIVIHEAQSLGASCANA 132 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN------ 192 LLKTLEEPP V F+L +T ++ T+ SRC ++ Q +E Sbjct: 133 LLKTLEEPPASVYFVLVSTSAAQVLQTVSSRCQHIPFTFINQAQAAKLVERAAASTPEQA 192 Query: 193 --EEHIAHEPRALQLLARAA-----------------EGSLRDALSLTDQAIASGDGQVS 233 +I P+A R++ + D + L D+ + Sbjct: 193 RWALYIKQSPKAAIDFLRSSSKMNIRSKIMHIFAIMPDADSWDLIELADELCVLIQIPLD 252 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 + D D++ + A + V + A+ I E ++ LL A Sbjct: 253 QKTDEQ---QADFDRSQDFLSAGARKKMQAVHKR-ELSRAQQISVEEIIDISASLLRD-A 307 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 M A LA + + ++++ ++ +E Sbjct: 308 MFFSEGAHAEIMNQDAVNICDCLAACASTDAMLATLAYVARAKQQMRAHVSAQLVLEAFF 367 Query: 354 LRALA 358 L Sbjct: 368 LNVHR 372 >UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q7R7_FRATN Length = 412 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 65/427 (15%), Positives = 139/427 (32%), Gaps = 64/427 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTA--LANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 M Y LA + RPQ+ ++VGQEH+L+ + + G + + G GVGKTS+AR++ Sbjct: 1 MKYIPLAARIRPQSIDEIVGQEHLLSQHGILTKILAGDGICSLVLCGKPGVGKTSLARII 60 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A + ++ E+ A V+D + L+ + Q+ + Sbjct: 61 A------------------------SSKKLEFFELSAVDS-GVKDIKKLITDNQHLDSF- 94 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 V +DE+H ++ + LL +E + L ++SR LK L Sbjct: 95 ---VLFLDEIHRFNKSQQDILLPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRL 151 Query: 179 DVEQIRHQLEH------ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA------ 226 + + +E +L + + + +EG R L+L ++ Sbjct: 152 SLVATQKLIEKTLSQDEVLAKHKFKIDDGLYNSMHNYSEGDCRKILNLLERMFLISTRGD 211 Query: 227 --SGDGQVSTQAVSAML------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 + ++ QAV G +Q + +++ + + + ++ G++ Sbjct: 212 EIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDP 271 Query: 279 EALLVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQ----------L 327 + ML + I + D ++ + Sbjct: 272 LVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNA 331 Query: 328 YYQTLLIGRKELP--YAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMT 385 Y+ L ++ + D ++ + P + T Sbjct: 332 CYKALAQAQQLVKSLGNIDVPQHLKNYKDSNYLYPHNYPNSYVIQQYLPDNIIQNFYQPT 391 Query: 386 PTQVPPQ 392 + + Sbjct: 392 ASGFEAK 398 >UniRef50_B0NZJ0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZJ0_9CLOT Length = 346 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 35/335 (10%), Positives = 104/335 (31%), Gaps = 39/335 (11%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 +++ L + + YLF G + + L K L E Sbjct: 19 KNMKKILED-IKTNTYERFYLFYGEEKYMISQMKNQLKKALVSEDDTMN----------- 66 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 E A ++++ + P + ++DE L + S + ++ Sbjct: 67 ------YSYFEGKRADAI------EIVELAKTLPFFSDHRFLILDET-GLGKKSDDTFIE 113 Query: 142 TLEEPPEHVKFLLATT---DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 L+E + L K+ + ++ +++ L +L +E Sbjct: 114 GLKEASDTSVVLFIEDSVDKRSKIYKFLSKEGHAVCFESAGDKELSRWLISLLKKEGKQM 173 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAMLGTLDDDQALSLVEAM 256 ++ + + ++ I+ +++ + + + + +Q ++EA+ Sbjct: 174 SSATMRSFLYRCGSDMYTLKNELEKLISYVGEREEITIRDLEELTSSQTTNQIFVMLEAI 233 Query: 257 VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL---------SPAALGNDMA 307 E+V+ L + +L ++ +++ V+ A A Sbjct: 234 ARKQREKVLTLYYDLIELKESPFGILALLVRQCNQLLQVKDLDCLGKSNGMIAKQMKVPA 293 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + ++++ A+ ++ + + + Sbjct: 294 FVAGKLKDQAKMFSMDTLRDMIEACAKTDESIKTG 328 >UniRef50_B1I0B6 DNA polymerase III subunit delta' n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B6_LYSSC Length = 290 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 120/335 (35%), Gaps = 46/335 (13%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 + + + G++ HAYL G+ A + + + C+ CG C NCR I+ Sbjct: 1 MKSIFQKLIWTGKLAHAYLLVGSS----LEFALWITQCVYCKD---QNACGQCANCRRIK 53 Query: 84 QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D+ I KV+ R+L G+ +V++ID + ++ ++ NALLK+ Sbjct: 54 HGNHPDVHIIVPDGTKIKVDQIRELQREAALKAVEGQKQVFIIDNANKMNENAANALLKS 113 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + +LL + + TI+SR +K ++L + ++ Sbjct: 114 LEEPLQDTLYLLVSETKNNILPTIISRVQTLKMK------EENRLVDEAEKNNLH----- 162 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 L+ L + +L +++ ++ + S ++G+ + + ++ + Sbjct: 163 LKYLNIYEDCNL--SINQLEKY------KDSIDEWIDVIGSTFSQNTSNALLSVQTSW-- 212 Query: 263 RVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP 322 + V M + +++ ++ Sbjct: 213 ------DNIFNDKESKHLATVLMQSYVRSALLIKRGKPSIWKIDVP-----------YSW 255 Query: 323 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + + + +K + + +E + + Sbjct: 256 DQLVQLEKRVNNIQKAIYSNGHFLLAMEDFFIHKI 290 >UniRef50_D2LCB5 DNA-directed DNA polymerase n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCB5_RHOVA Length = 353 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 16/280 (5%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ + G + G +HHA+L +G RG+GK S A A+ L G A Sbjct: 19 PRLADALFGHNEAEAMFLRSFNAGALHHAWLITGERGIGKASFAWRAARFLLSRDGEAAG 78 Query: 72 P----------CGVCDNCREIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGR 119 R+I G L ++A AS V++ R L + G Sbjct: 79 SGRAPATSLDVPSSHPTARQIAAGAHSSLFALEAGGASTIGVDEVRKLRAFLGLTS-PGG 137 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 ++ ++D + L+ S NALLK +EEPP+ F L + + TI SRC++ L+ LD Sbjct: 138 WRAMIVDPANDLTIASANALLKAVEEPPQRTVFFLVSHGAAAVLPTIRSRCIKLALRPLD 197 Query: 180 VEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 +E + E +Q L A GS AL+L + ++ + V Sbjct: 198 TAPFACAVEAACARAGLDAPEAEQMQRLHALAGGSAGRALNLIGGGLLKLADKL--ERVM 255 Query: 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 L D L+++ A A + + IE Sbjct: 256 DGLRRPDQAAVHDLIQSASGAKNADTFARLCDLIEERIEA 295 >UniRef50_UPI0001924838 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924838 Length = 260 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 10/231 (4%) Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG----- 118 C+ I R++ ++E++A+ ++ R+ + N Sbjct: 30 CDNYIDDIFINESWKLRKLHDLYKSRVLELNASDERGIQVIREKVKNFASQSVSSFKVDG 89 Query: 119 ----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 FKV ++DE ++ + AL +T+E + +F L ++ I SRC +F Sbjct: 90 TPCPPFKVVILDEADSMTTSAQAALRRTMERQTKTTRFCLICNYVSRIIEPITSRCAKFR 149 Query: 175 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VS 233 K L I QL++I E + E AL+ L +++G +R A++ A G+ + Sbjct: 150 FKELSSNAIYEQLKYISRMEAVKIEEEALEQLIESSDGDMRKAITYLQSAHRLKLGEIIL 209 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVE 284 + M G + +++A + E++ + G L+ + Sbjct: 210 ANDIFEMTGKVPKTMVADIMKACSSGSFEKLDKQVKLMMTGGYSASQLITQ 260 >UniRef50_A6W591 DNA polymerase III, delta prime subunit n=4 Tax=Actinomycetales RepID=A6W591_KINRD Length = 392 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 142/392 (36%), Gaps = 50/392 (12%) Query: 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69 + DVVGQ + L R + HA+L +G G G+++ AR A L CE + Sbjct: 4 WDDVVGQGPAVEVLTRAARAARRGTVGMTHAWLLTGPPGSGRSTAARAFAAALACEDPVE 63 Query: 70 ATPCGVCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 CG C CR G D+ + + ED L+ Q P+ R++V ++++ Sbjct: 64 IG-CGACPGCRTALAGSHADVTVFTTEHMQIRREDVEPLIATAQRRPSVARWRVVVVEDA 122 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ S N LLKT+EEPP +LL + TI SR L+ + + L Sbjct: 123 DRLNPTSGNVLLKTIEEPPPQTVWLLCAPAVDDVLPTIRSRARHVPLRVPPADAVAELLV 182 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG------------------ 230 +P ARAA+ + A L A Sbjct: 183 RR-----DGIDPVMAAFAARAAQSHVGLARRLARDEGARIRRREVLRLPQRLRGVGEAVV 237 Query: 231 ------QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE------- 277 +V+ + A D + L+ A+ V + + E Sbjct: 238 AAGELVEVAAEEAGASTTERDARERAELLRALGADGVATVPPAVRGQVRQLEEDQKRRAR 297 Query: 278 ------WEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQT 331 + LV++LGLL + +VQL A + + + +R +A + P D+ Sbjct: 298 RHQTDVLDRSLVDLLGLLRDVLVVQL-GAPVELVNSDMTGDVRAMAASSTPEDVLRRADA 356 Query: 332 LLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 + + R+ L + +E L A H Sbjct: 357 VQLARQRLAQNVAPLLAIEALALTLRAPHRSP 388 >UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv2559c/MT2636 n=53 Tax=Bacteria RepID=Y2559_MYCTU Length = 452 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 67/342 (19%), Positives = 122/342 (35%), Gaps = 48/342 (14%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP + +VVGQ+H+L L + + L G G GKT++A L+++ Sbjct: 30 PLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVIL-YGPPGSGKTTLAALISQA 88 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 E +A V++ R +++N + A G Sbjct: 89 -------------------------TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQT 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V IDEVH S+ +ALL +E + + +LSR L L+ L E Sbjct: 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 Query: 182 QIRHQLEHILNE-----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-------- 228 R ++ +++ +A P A+ LL + A G R AL+ + A + Sbjct: 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 Query: 229 ----DGQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 + V AV G D + ++++ ++ + + + G + + Sbjct: 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 Query: 284 EMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 324 ++ L I M S + A + + Sbjct: 304 RLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAH 345 >UniRef50_C9M5W8 Replication-associated recombination protein A n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5W8_9BACT Length = 426 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 127/406 (31%), Gaps = 59/406 (14%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP++ + G +L L L G + L G GVGKT++ RL+ + Sbjct: 7 PLAERMRPRSLDEYRGHSSILAPGAPLRRFLEEGDVPSCIL-YGPPGVGKTALVRLMGRV 65 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 E A KV + RDL+D GR Sbjct: 66 TGRELLEIN-------------------------AVSAKVSELRDLVDRAADLRRLSGRS 100 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 + +DE++ +R +ALL ++E + ++ T+LSR L F + L+ Sbjct: 101 AIAFVDELYHFNRSQQDALLPSVERGEVILVGTTTENPRFEINKTLLSRLLVFEIGPLEK 160 Query: 181 EQIRHQLEHILN-------EEHIAHEPRALQLLARAAEGSLRDALSLTDQA----IASGD 229 E + L+ L E ++ ++ +A +A G R AL+ + SG Sbjct: 161 EDLVEILKSALTDRERGLGELELSASDDVIEAIAASAGGDGRQALTRLEFLSRAIAVSGR 220 Query: 230 GQVSTQAVSAMLGTL----------DDDQALSLVEAMVEANGERVMALINEAAARGIEWE 279 + ++ L ++++++ ++ + + + G + Sbjct: 221 RTIEEDDLTKSLPAAFVRHDRRQDDHYAVISAMIKSIRGSDPDAAVYWLARLIEGGEDVR 280 Query: 280 ALLVEMLGL-LHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKE 338 + ++ L + + + A R+ P I + + Sbjct: 281 FIARRLMILAAEDVGLADPQALVVATAGADAADRV-----GWPEARI--ILSEVALYLAA 333 Query: 339 LPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVM 384 P + + V + + Sbjct: 334 APKSNSAYLAVGKAQDAIRRGDLLAVPSHLINGQPGYQYPHDFPNH 379 >UniRef50_C9DGI4 Gp44 clamp-loader subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI4_9CAUD Length = 327 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 116/315 (36%), Gaps = 41/315 (13%) Query: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGT-RGVGKTSIARLLAKGLN 63 V ++WRP +VV T L + + GRI + F G GKT+ A L L Sbjct: 19 VWYQRWRPSNLDNVVLPAGFKTKLLSYVENGRIP-SLCFYSPSPGTGKTTAAWALCNYLG 77 Query: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAP-ARGRFK 121 + + I+A+ VE R +L+ G FK Sbjct: 78 ------------------------IRPLFINASMNNDVETIRTRVLEYATTMSLVGGGFK 113 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V ++DE LS + ++L +E+ +H F++ T K+ +LSRC Q E Sbjct: 114 VVILDEGERLSSTAQDSLKGLMEQVSKHCSFIITTNSKTKIVEPLLSRCDQVDFIYNSDE 173 Query: 182 ------QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 QI + IL E + ++ +L L + R L Q++A G+++ Sbjct: 174 MIEINSQIVRRAMGILEAEGVPYDLNSLVDLVKDCAPDNRKVLVRL-QSLAGQYGEIN-- 230 Query: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV 295 +A L +D +LVE++ + + V E R + + +L L Sbjct: 231 --NAALQRMDSSMVSTLVESLKRKDFKAVNDWCMENYERFGD--DIYGALLKGLRPSLQP 286 Query: 296 QLSPAALGNDMAAIE 310 Q + Sbjct: 287 QSLVDTIATLNDYQR 301 >UniRef50_A8LRV9 DNA-directed DNA polymerase n=41 Tax=Rhodobacterales RepID=A8LRV9_DINSH Length = 381 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 117/370 (31%), Gaps = 48/370 (12%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 71 P+ V G L + ++ R+HHA+L +G +G+GK S A A+ L Sbjct: 19 PRFATRVFGHGAAEADLLDAVASDRLHHAWLLTGPKGIGKASFAWRAARFLLATPASDPG 78 Query: 72 P---------------CGVCDNCREIEQGRFV---------DLIEIDAASRTKVEDTRDL 107 P R I D V+ R L Sbjct: 79 PSLFGDAPAAATSLDIDPDHPVARRIAALSDPRLYLLRRPYDEKTSRFKQDIPVDAARGL 138 Query: 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 + G +V ++D ++ + NALLK LEEPP LL P KL TI Sbjct: 139 KGFFTMSAVDGGRRVVIVDAADEMNASAANALLKVLEEPPVDTVILLVCHAPSKLLPTIR 198 Query: 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 227 SRC + L + L L L L AEGS+ A++L Sbjct: 199 SRCRTLRMGPLSEPDLGDALAQAL---GAPLPDAELASLNALAEGSVGQAITL------- 248 Query: 228 GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML- 286 G L L++ + + + L AAARG E L+ ML Sbjct: 249 ----------RDAGGPEAYGSLLGLMDGLPRLDRPATLKLAESAAARGAEARFDLLLMLT 298 Query: 287 -GLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPD- 344 L R+A + ++ LA T Q L+ + A + Sbjct: 299 ETFLFRLARTGATGHPPTGASPQEAALLQRLAPTAQAARGWATAQATLLAKARAGRAVNL 358 Query: 345 -RRMGVEMTL 353 + Sbjct: 359 DPTALLLDMF 368 >UniRef50_Q2RMF7 DNA-directed DNA polymerase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMF7_MOOTA Length = 284 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 6/217 (2%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 L L G++ HAYL G G+ + A LA LNC PCG C +CR++ Sbjct: 3 AHQQLKQALLAGKLAHAYLLVGGSEEGRRAEAIYLATALNCRYLQGGEPCGSCHSCRQMA 62 Query: 84 QGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 G D ++ K+ R+L + +G KV ++ ++ + N LLKT Sbjct: 63 GGNHPDFYLLEPRGTNLKIAQIRELEARLALQAFQGGVKVAVLAGADTMTEAAANCLLKT 122 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFH---LKALDVEQIRHQLEHILNEEHIAHE 199 LEEPPE +L P L TI SRC + H A+ + + + + E Sbjct: 123 LEEPPEGTYLILLAAQPDPLLPTIRSRCQEIHLEGAMAISQAGTGYWARLVAADLPVIME 182 Query: 200 P--RALQLLARAAEGSLRDALSLTDQAIASGDGQVST 234 L+ A AL+ DQ + G + Sbjct: 183 EILPELEKEADLPAVLTGMALACRDQLVWQLTGSATL 219 >UniRef50_C0N2D2 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2D2_9GAMM Length = 308 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 12/257 (4%) Query: 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVD 89 R+ HA L SG +G+GK + A L L C+ CG C +C+ + G D Sbjct: 1 MHQAQRMPHAILLSGIQGLGKRAFADTLIASLLCQQQTDQFEACGHCHSCQLLAAGSHSD 60 Query: 90 LIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 I + KV+ R+L + P K LI ++ ++N+LLK LEEP Sbjct: 61 HTLITPEDIGKQIKVDQIRELKASQTLMPKVSHGKTVLITHADQMNLSAYNSLLKLLEEP 120 Query: 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 + +L + + Q+LP+TI SRC + + + E+ LE H+ + Q L Sbjct: 121 QPNSVLILISENSQQLPITIKSRCQKIVIATPNEEESLDWLEQQAP----HHDRKTWQSL 176 Query: 207 ARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 + A G+ AL + ++ + M G + + + + + + VM Sbjct: 177 LKLAHGAPLHALDNEEHSLIQSQ-TIIKDIAVLMKGQANP---VQMAANWQQFDLKSVMY 232 Query: 267 LINEAAARGIEWEALLV 283 I IE L Sbjct: 233 QIQSMMQAKIESLLLAD 249 >UniRef50_Q89AG8 DNA polymerase III subunit delta' n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=HOLB_BUCBP Length = 336 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 130/369 (35%), Gaps = 54/369 (14%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ + ++ ++ ++ + HH+ + + +G T +A+ ++ Sbjct: 1 MNLYPWLQ----HSYKQIIYPHYI----------NKGHHSIILESHKNIGITCLAKHISL 46 Query: 61 GLNCETGITAT-PCGVCDNCREIEQGRFVDLIEI--------DAASRTKVEDTRDLLDNV 111 L C+ + C C +C+ + D +++ V + R+ + + Sbjct: 47 WLLCQKKNKSIYHCKTCHSCQLMNSKNHPDWHYFGSNTCLSKNSSKTIGVNEVRNFTNTI 106 Query: 112 QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 + +G+ K+ I + L+ + N+LLK +EEPP++ FLL P K+ T+ SRC+ Sbjct: 107 FNSAQQGQNKIVYIPNIKKLTEFAINSLLKIIEEPPQNTYFLLINYLPHKIITTLRSRCI 166 Query: 172 QFHLKALDVEQIRHQLEH--ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 +L E L+ I + I ++ ++ + +L Q Sbjct: 167 IHNLYGPTKENRIEWLKEQNINTNQKIHMSMLYSNEISFISK--CKHSLFFLYQERL--- 221 Query: 230 GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289 + +L+ + E N +++ ++N + + + + G++ Sbjct: 222 -----------------NFFETLLTSFQEKNFLKMLNVLN----NKKCLDQIFIWICGII 260 Query: 290 HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPY--APDRRM 347 + + ++ LA + Y++ + + + + Sbjct: 261 LDSIKWKHDINTI-IINTDQTKIIQILASNFSILSLDNSYKSWIYCYNNIKNIPGINIEL 319 Query: 348 GVEMTLLRA 356 LL Sbjct: 320 LFVKQLLYW 328 >UniRef50_Q7CZ44 DNA polymerase III, delta prime subunit n=6 Tax=Rhizobiales RepID=Q7CZ44_AGRT5 Length = 341 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 25/276 (9%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA- 70 PQ + G E LA G+ HHA L G G+GK ++A A + + Sbjct: 14 PQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLTHPDPASA 73 Query: 71 -----TPCGVCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPA 116 P R+I G +L+ + S V++ R Sbjct: 74 PDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGHFFSQTSG 133 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 G +++ +ID L+R++ NA+LK LEEPP+ FL+ + P KL TI SRC+ L Sbjct: 134 TGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLL 193 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVST-- 234 L + L ++ I+ E L A++GS+ AL + + G + Sbjct: 194 PLSDAAMVQAL----DQLDISPEGEKRDALLTASKGSVAQAL----KLMNYGGSDIVEAF 245 Query: 235 QAVSAMLGTLDDDQALSLVEAMVEANGERVMALINE 270 V + G + L E + + +G+ V+ E Sbjct: 246 AEVMSAEGPGARKRMHKLAEVLAQKDGDIVLGFFME 281 >UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardnerella vaginalis RepID=D2RB58_GARVA Length = 462 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 60/318 (18%) Query: 4 QVLARKWRPQTFADVVGQEHVLT------ALANGLSLGRI--HHAYLFSGTRGVGKTSIA 55 + LA + RP + DV+GQ H L LAN S G + + + G GVGKT++A Sbjct: 17 RPLAVRMRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLA 76 Query: 56 RLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA- 114 ++A+ + E +A + V+D R +LD Sbjct: 77 YIVARQ-------------------------SGRVFEELSAVTSGVKDVRAVLDRAHERL 111 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 + G+ V IDEVH S+ +ALL ++E + +LSR + Sbjct: 112 VSNGQETVLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKPLLSRSVVVK 171 Query: 175 LKALDVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQAIASGD 229 L +L VE + +E L E+ + + A+ + R + G R L++ + A + Sbjct: 172 LASLSVEDLHTLIERALTSENGLNNQLKIDDDAIDSIIRLSGGDARKTLTILEAAAGAVT 231 Query: 230 GQ-----------VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALI 268 G ++ VS ++ G D + +++M ++ + + + Sbjct: 232 GDVALQHGKKKPVITDDIVSNVMDTTTVRYDKDGDDHYDVISAFIKSMRGSDVDASLHYL 291 Query: 269 NEAAARGIEWEALLVEML 286 G + + ++ Sbjct: 292 ARMLRAGEDPRFIARRIM 309 >UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase n=8 Tax=Lactobacillus RepID=C2HPK6_LACAC Length = 478 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 118/350 (33%), Gaps = 51/350 (14%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 M++ Q LA RP+T ++VGQ H+L L + I + L G G GKT++A Sbjct: 50 MTFKQPLADLMRPKTLGEMVGQNHLLAKGKPLYQIIKE-HILLSLLLWGPPGCGKTTLAY 108 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 ++++ L +++ L +Q P Sbjct: 109 VMSQTLRLPFEKF----------------------------NASIQNKSQLQKLIQKHPD 140 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 V L+DE+H L++ + LL LE + + I SRC F Sbjct: 141 ESF--VLLLDEIHRLTKPIQDYLLPYLENGHVLLVGTTTENPIMSIQPAIRSRCQIFEFY 198 Query: 177 ALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 + E I L E + + +A + G +R +L++ D A +S Sbjct: 199 PIKAEDIELVLIKAAEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNISMA 258 Query: 236 AVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + T D + +++ ++ + + + G L + Sbjct: 259 NIEEFARNQHFAFDKDATKHYDYLSAFQDSIEGSDADAALYYLAVILKSGD-----LESV 313 Query: 286 LGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIG 335 + L +A + + A I L L +P L T+L+ Sbjct: 314 VRRLKDLAALDVGLADSARVAQVITLANTALEIGLPRASTHLAMATILLA 363 >UniRef50_A7HXT6 ATPase involved in DNA replication n=4 Tax=Alphaproteobacteria RepID=A7HXT6_PARL1 Length = 387 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 139/371 (37%), Gaps = 51/371 (13%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC------- 64 P+ A +VGQE AL GR+HHA+L +G +G+GK ++A +A+ Sbjct: 18 PREAAALVGQEAAERALFEAFMSGRMHHAWLLTGPKGIGKATLAYRMARFALHYGTAEAA 77 Query: 65 --ETGITATPCGVCDNCREIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQY 113 ++ G +L+ + V++ R + Sbjct: 78 RAAGARDLNISPDEGVFHQVAAGSHPNLLTVRRPWDDKTKKLKTVIPVDEVRRIGHFFGL 137 Query: 114 APAR-GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 G ++V +ID ++ +S NALLK LEEPP + FL+ + P +L TI SRC Sbjct: 138 TATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCRT 197 Query: 173 FHLKA---------LDVEQIRHQLEHILNEEHIAHEPRA-LQLLARAAEGSLRDALSLTD 222 + ++ + + + + A P A Q +A+ AEGS ALS Sbjct: 198 LRMTPLAEGDIVSMMEPAERQAEARAKEAKRKFAMTPAAERQPIAQLAEGSAGRALS--- 254 Query: 223 QAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIE--WEA 280 ++A G + L+ + + V A ++A +G + +E Sbjct: 255 --------------IAAGGGLGLYKELAGLLAGLPRLDIAAVHAFADKAGRKGADDAYET 300 Query: 281 LLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI--GRKE 338 ++ + L R+ + +A M LA ++ + R E Sbjct: 301 MIELLTHWLQRLVRTGAGLHPGPDIVAGEGAAMARLAAGGSLDRWVEVWEKINQSTARGE 360 Query: 339 LPYAPDRRMGV 349 DR++ + Sbjct: 361 -ALNTDRKLVI 370 >UniRef50_A8H3V9 DNA polymerase III, delta prime subunit n=7 Tax=Shewanella RepID=A8H3V9_SHEPA Length = 305 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 15/192 (7%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M+ +P L + L R+ HAYL G G S+ LAK Sbjct: 1 MTALPW---LQPT-----------LDKFSEQLKTARVGHAYLVGMDAGYGGESLVLELAK 46 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGR 119 C CG C C+ IE DL ++A + KV+ R+L + +G Sbjct: 47 MSLCHQLGQGGACGFCKACQLIEANNHPDLYLVEAEGAQIKVDQIRELCQKLTTTSQQGG 106 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 +V +I L++ S NALLKTLEEP + LL T P +L TI SRC + ++ + Sbjct: 107 RRVAVILNSERLNQASGNALLKTLEEPGKDTILLLQTNAPSRLIATISSRCQRLRVELPN 166 Query: 180 VEQIRHQLEHIL 191 Q++ L+ L Sbjct: 167 KMQVKQWLKEQL 178 >UniRef50_B1CBF2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBF2_9FIRM Length = 289 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 111/337 (32%), Gaps = 62/337 (18%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 E L N + + HAYLF G K L C+ C C+ C + Sbjct: 7 ETEKNILLNHIDKDTMSHAYLFYGAGEDVLDKTILEFLKTLYCKNSKYY--CDECEECIK 64 Query: 82 IEQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 I +D+ I ++ K++ RD+ + + + ++ +++I ++ S NA L Sbjct: 65 INTNNNIDITHIYKDSASIKIKQIRDMQYKISLSSSEYKYNIFVIHNADTMTIESSNAFL 124 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP + +L++ + L TILSRC+ + Sbjct: 125 KTLEEPVKDTIIILSSPSKEILLPTILSRCIHIKV------------------------- 159 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 + LSL+D+ + + +++ N Sbjct: 160 -----------NDNKVTLSLSDEE---------------------KNYIFESLSNILKGN 187 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS--PAALGNDMAAIELRMRELAR 318 + + + + E + ++ + + + S + + ++++ Sbjct: 188 NLNNVNISKKLTKDKNKVENYTLFIMKFFSDVLIYKESNLDMTFNDKSSDYMEYIKQVNN 247 Query: 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 + +Q +L + + Y + + + Sbjct: 248 LVTKDKLQKIIDKILYINEMINYNANASLAFLDLFIY 284 >UniRef50_C6XDK0 DNA polymerase III, delta prime subunit n=2 Tax=Methylophilaceae RepID=C6XDK0_METSD Length = 340 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 123/364 (33%), Gaps = 56/364 (15%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVC 76 Q V L + HA L G G+GK A+ L+K L C+ CGVC Sbjct: 8 FPWQHAVWAGLIA--QRKTLPHAMLLRGPAGIGKLQFAQALSKALLCQQPQADGHACGVC 65 Query: 77 DNCREIEQGRFVDLIEIDAA------------------SRTKVEDTRDLLDNVQYAPARG 118 +C QG D + ++ V R+L ++ + Sbjct: 66 ASCGWFAQGSHPDFRLLAPEQDQADEDAPAPAKPTTKKTQISVAQVRELGGFLELSSHHN 125 Query: 119 -RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 ++ LI L+ S NALLK LEEPP V FLL PQ+L TI SRC + + Sbjct: 126 DGVRIALICPAEGLNVASANALLKMLEEPPPGVVFLLVAHQPQRLLPTITSRCRKVDMPV 185 Query: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 237 D++ L ++ A GS A + G + + Sbjct: 186 PDMQGALSWLNGQGV--------DQAEVRLAYAGGSPMAARDQAE-------GSKPLELI 230 Query: 238 SAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQL 297 A L A SL + M ++ + L+ + + Sbjct: 231 LAQLARGAGADAYSLATMLNALGMAEAMRVLQK-----------------WLYDLLACRF 273 Query: 298 SPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + A + + ++ LA+++ + + L + + + + +E +L+ + Sbjct: 274 AVQARYHILHNAA--LQALAKSVDLAQMLELQRKLDDAYRSATHPLNNELQLESLMLQYV 331 Query: 358 AFHP 361 Sbjct: 332 QLFS 335 >UniRef50_O96271 Replication factor C subunit 1, putative n=7 Tax=Plasmodium RepID=O96271_PLAF7 Length = 904 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 124/395 (31%), Gaps = 68/395 (17%) Query: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSL---------GRIHH-------------AY 41 Q+ K+RP+ ++VG + L N L+ + Sbjct: 351 QLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCIKGIKKPAQKTFRGIFENVNARCA 410 Query: 42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV 101 L SG G+GKT+ A+++++ ++IE +A+ Sbjct: 411 LLSGPAGIGKTTTAKIVSEA------------------------SGYNVIEFNASDERNK 446 Query: 102 EDTRDLLDNV----QYAPARGRF---KVYLIDEVHMLS---RHSFNALLKTLEEPPEHVK 151 + + R ++DEV +S + A+LK +E+ + Sbjct: 447 AAVEKISEMATGGYSIMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK-TKCPI 505 Query: 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 + T+ ++C + +L I +E I EP AL+LL + Sbjct: 506 ICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTC 565 Query: 212 GSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEA 271 G +R L+ Q ++ ++ + L + + ++++ E + L+N Sbjct: 566 GDIRQMLNTL-QLLSKTYTRIQFLDLKKELNNSNKN-----IQSL-ANPFEITLKLLNFN 618 Query: 272 AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPP-TDIQLYYQ 330 + + ++ ++ + ++ + + I Sbjct: 619 ESSKLNIREIMDL---FFVDYELIPYFISENYTNVFNETDKSSASLNKWNVFSQIAHDLS 675 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPL 365 + + D + +L + R+ + Sbjct: 676 LADKIKYNMKSNMDFALLPHFAILSCVCPVMRIKI 710 >UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba RepID=C4LTC0_ENTHI Length = 611 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 98/251 (39%), Gaps = 36/251 (14%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 Y LA K RP+ D++GQE +L + +I + + G G GKT+IA + Sbjct: 42 YIPLAEKQRPKNLEDIIGQEDILAIGTPFNTMIKNDKI-QSTILYGPPGCGKTTIAGI-- 98 Query: 60 KGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 I+ I + AAS K ED + ++++ ++ G Sbjct: 99 ----------------------IKNNSKSTFISMSAASS-KKEDFKKVINDAKHRKRMGI 135 Query: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 + +DE+H L+R + L +E + +L ++SRC LK L Sbjct: 136 NTILFLDEIHSLNRLQQDTFLPAIESGTIILIGATTENPSFELNNALMSRCQLVTLKKLT 195 Query: 180 VEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD---GQV 232 E + + ++EE I + L +A ++G R AL+ ++ + +V Sbjct: 196 DEDVVKIMRKAIDEEYCNSKIDIDNEGLHFIAAISDGDARSALNTLEKVFVHFNLMSEKV 255 Query: 233 STQAVSAMLGT 243 ++ G Sbjct: 256 LKNEINEKGGI 266 >UniRef50_Q9YBS5 Replication factor C large subunit n=1 Tax=Aeropyrum pernix RepID=RFCL_AERPE Length = 479 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 36/294 (12%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSL---GRIH--HAYLFSGTRGVGKTSIAR 56 S K+RP+ DVV Q+ L GR A L G GVGKTS+ Sbjct: 8 SRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVE 67 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 +A N +++IE++A+ + D ++ + Sbjct: 68 AIASEFN------------------------LEMIELNASDYRRRSDIERIVGAASRKRS 103 Query: 117 RGRFKVYLI-DEVHMLSRHSFNALLKTLEEPPEHV--KFLLATTDPQK-LPVTILSRCLQ 172 + V ++ DEV ++ ++ L + ++ DP K + L Sbjct: 104 MFKRGVVILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDPWKDFLRPLREVSLM 163 Query: 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQV 232 + L + I L+ I E I E AL+ +A +EG LR A++ QA+A G G+V Sbjct: 164 VEFRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDL-QAVAEGYGRV 222 Query: 233 STQAVSAML-GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285 + ++ G + + + MA + ++E L+ + Sbjct: 223 TLTLAREIVRGREKSIDIWRTLNQVFYKPRQAWMAR-KAVSQSEKDYEELIAWI 275 >UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase n=8 Tax=Actinobacteridae RepID=Q6A8J0_PROAC Length = 461 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 115/310 (37%), Gaps = 52/310 (16%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ+H+LT L L+ G + G GVGKT+IA +++ Sbjct: 30 PLAVRLRPRTIDEIVGQQHLLTPGSPLRR-LAEGTGAMSVFLWGPPGVGKTTIASVVSHA 88 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 N + A V+D R LD + A G+ Sbjct: 89 TNRRFVEIS-------------------------AVTAGVKDIRRELDTARRQLALGQPT 123 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V +DEVH S+ + LL +E + + +LSR L LK L Sbjct: 124 VLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPLTEA 183 Query: 182 QIRHQLEHIL---------NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD--- 229 + L+ L ++ E A L + A G R AL+ ++A A Sbjct: 184 DVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGASAAG 243 Query: 230 -GQVSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +++Q VS + G D + ++++ ++ + + + G + Sbjct: 244 TDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAGEDP 303 Query: 279 EALLVEMLGL 288 + ++ L Sbjct: 304 RFIARRLIIL 313 >UniRef50_A1APS5 DNA polymerase III, delta subunit n=4 Tax=Desulfuromonadales RepID=A1APS5_PELPD Length = 338 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 37/346 (10%), Positives = 85/346 (24%), Gaps = 36/346 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L + GR+ G RLL P N Sbjct: 4 QELETSIRGGRLPLLCYLYGEESFLIERATRLLL-------EKAVDPSLKDFNFNVFFGN 56 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 ++ ++D P + L+ +L + LL+ L Sbjct: 57 ES-----------RGID----IVDAALTLPMFAERRAVLVKRAELLKVDALEVLLEYLRN 101 Query: 146 PPEHVKFLLAT---TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 P + +K + + K L ++ + + EP A Sbjct: 102 PATGTCLVFNGLKIDQRKKFFQELKKQGALVEYKRLYENKLSAFILGEAKTQGKPMEPAA 161 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 LL+ +L++ S ++ + + ++ V + + L + + Sbjct: 162 ADLLSFLIGNNLQELSSQIEKLVLYAGDRPRITLDDVREVASSSKAFTVFELARYLGIRD 221 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA---------LGNDMAAIEL 311 + ++ G E +L + ++ V+ Sbjct: 222 LSSALKSLDTLFRNGEEVPMMLGALARHFRQLWRVRELLDQGVPQSDIGRQVGINPYFLG 281 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + AR P ++ ++ L + + Sbjct: 282 EYLQQARNFPRPELSSIFEELYRCDLASKSGGHPYTLMHGLVTGIC 327 >UniRef50_A8URT3 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URT3_9AQUI Length = 315 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 101/321 (31%), Gaps = 67/321 (20%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC- 79 Q V L R LF G GVGKT+ A A+G C CG C +C Sbjct: 6 QSAVRELLERIQKEKRYPGGLLFYGLSGVGKTTAALDFARGALCLEEKEWG-CGSCSSCL 64 Query: 80 ----------------------------REIEQGRFVDLIEIDA-ASRTKVEDTRDLLDN 110 + G D I + +++ R + D Sbjct: 65 HYDRVAEDILSGKWEGISLYDESDGKKILKYLSGEHPDFIYVPPYGGSLRIDQIRAVKDF 124 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 PA KV ++++ H ++R + NALLK LEEPP F+L + +L TI+SR Sbjct: 125 AYMRPALSHRKVVVLEDSHTMTREAGNALLKVLEEPPSDTLFILISESKDQLLPTIVSRT 184 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 230 Q L+ E L + L R + GS A + Sbjct: 185 YQVEFHPLEEEVFYSLLG------------EENEELYRVSGGSYSLAKLI---------- 222 Query: 231 QVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAA-RGIEWEALLVEMLGLL 289 D + L +V+ + + V + + + E L + L Sbjct: 223 -------------KDRGEVLKMVDDFLSLKPDTVYQVAIKLDKSEPEDRELFLELLEDRL 269 Query: 290 HRIAMVQLSPAALGNDMAAIE 310 + + + + Sbjct: 270 RKTFLDKGLNYDKFEMLLDRI 290 >UniRef50_C6L9U8 DNA polymerase III, delta subunit n=4 Tax=Clostridiales RepID=C6L9U8_9FIRM Length = 324 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 101/342 (29%), Gaps = 39/342 (11%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L L + YL G K L + L C Sbjct: 2 KNLIQDLKNNDFKNIYLLCGEEDYLKKQYKHRLQEALVAPEDTVNLNC------------ 49 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 A V +L+D + P ++ +I++ + + L + LE Sbjct: 50 --------YAGKNISVN---ELIDQAETLPFFAERRLLVIEDSGFF-KSASAQLAQYLEN 97 Query: 146 PPEHVKFLLATTDPQK---LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 P FL + K L + + K + + + IL +E+ RA Sbjct: 98 VPPTTYFLFVEDEVDKRQKLYKAVKNHGRIVEFKRQTEDTLSRWILGILKKENRNITRRA 157 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQ--VSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 L+L + + + ++ + + ++ + V + T ++ +V A+ N Sbjct: 158 LELFLEKTGTDMNNISTELEKLLCYTMEKEVITPKDVEEICTTQTVNKIFEMVNAVSAGN 217 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA---------LGNDMAAIEL 311 R + L + A +L + +++ V+ + + Sbjct: 218 NRRALDLYYDLLALKEPPMRILFLVTRQFNQLLQVKGLRSQGYDADSIAGKLGIQRFVAQ 277 Query: 312 RMRELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMT 352 + ++ + + + + ++GVE+ Sbjct: 278 GCVRQSERFTEAQLRRLVTQCVETEEAVKTGNLNEKLGVELI 319 >UniRef50_Q3SIN0 DNA polymerase III delta prime subunit n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIN0_THIDA Length = 327 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 122/350 (34%), Gaps = 47/350 (13%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCR 80 E V L + R A L +G RGVGK+++A A+ L CE + CGVC C Sbjct: 9 EPVWQRL--LATRSRPAQALLLAGPRGVGKSALALEWARALLCEAPRPDGSACGVCPACH 66 Query: 81 EIEQGRFVDLIEI------------DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128 E G D + A+ +V+ RD +D VQ + R ++V L+D Sbjct: 67 WFETGAHPDFRRVGLQEKTSKEGETRLATAIEVDQARDAVDFVQLSTYRAGYRVVLVDPA 126 Query: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 188 L+ + NALLK LEEPP + F+L P++L TI SRC + + + Q L Sbjct: 127 DSLNLAAANALLKVLEEPPLNTVFVLVADQPRRLLPTIRSRCTRLDVGLPALAQATAWLG 186 Query: 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQ 248 L A G+ AL + + V L Sbjct: 187 EQGV--------DDAPTLLALAGGTPLAALGWCEGEVLDERR-----GVLEGLARP---- 229 Query: 249 ALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAA 308 ++ + + +A + L + V+L + Sbjct: 230 --QALDPVTLGERWKAVA-----------PQTWHDVAYKWLGDLLAVRLGGS--VQFNQD 274 Query: 309 IELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 + L R + +T + L + +R + ++ L+ Sbjct: 275 FIDVLATLGREADLGKLLALAKTQADEGRTLAHPLNRSLQLQAWLVEYRH 324 >UniRef50_C3WFU7 ATPase and helicase n=3 Tax=Fusobacterium RepID=C3WFU7_FUSMR Length = 303 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 D++ E V N L L + YLF G+ A AKGL CET CG Sbjct: 2 IRDIISNEEVKEFFRNELKLKKDSGTYLFYGSDMSLLMEFALHFAKGLCCETLE-GDFCG 60 Query: 75 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 C+ C+ I++ + DL +D KV++ R+L + G K+++I ++ + + Sbjct: 61 ECNICKRIDKMLYSDLEILDNPDGLKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKE 120 Query: 135 SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 + NALLK +EEP + F+L T+ + TI SR + +K E+ Sbjct: 121 ASNALLKLIEEPNKGSFFILLNTNLN-ILPTIKSRSILVKVKKRTAEE 167 >UniRef50_C6HYK9 DNA polymerase III (Fragment) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYK9_9BACT Length = 216 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 7/210 (3%) Query: 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 + + GQ+ L L+ L+ G A L G GVGK + A L++ + C PCG Sbjct: 10 LSSIRGQDRALARLSRILAGGLRSGAVLLWGPEGVGKRTTALALSRRILCAEPQEGAPCG 69 Query: 75 VCDNCREIEQGRFVDLIEIDA--ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS 132 C +CR D ++ ++ R+LL + ++ L+DEVH L+ Sbjct: 70 RCLSCRTPLA-AHPDFHLLEPGETQSIGIDAVRELLRGTLESSLVSPVRIALLDEVHRLT 128 Query: 133 RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 + N+LLK+LEEP +++ F L + P +L T+LSR L+ L L + Sbjct: 129 PEASNSLLKSLEEPSDNLLFFLVSPSPDRLLPTLLSRLLKVRFLPLSDGD----LAAVAR 184 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTD 222 E P A++ + GS L L D Sbjct: 185 ERRPESPPEAIERALPLSGGSAGRLLGLVD 214 >UniRef50_UPI0000E0FA0C DNA polymerase III subunit delta n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FA0C Length = 298 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 112/300 (37%), Gaps = 16/300 (5%) Query: 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 + T +HHA L G+GK + LA L C CG C +C Sbjct: 10 EIHTQFMRHAQANTLHHAILLHAKPGMGKHAYVHQLADDLLCHHLKFGHACGQCQSCLLN 69 Query: 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 + D I + + V + R+ L +Q + K+ +I+ ++ + NALLKT Sbjct: 70 QASSHPDRYVIASDKQISVNEIREALTKLQEHAQLRQRKILIIEHADTMTESAANALLKT 129 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 LEEP + LL +D Q+L TILSRC + L ++ IR L ++ A Sbjct: 130 LEEPSLNTFLLLTVSDIQRLLPTILSRCEKNTLIIPSLDMIRAWLNE-------HYQITA 182 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL-VEAMVEANG 261 L RA + + ++ + D +++ A LG + Q SL + Sbjct: 183 ADDLMRAYQFAPLSIVNAL-----TEDTEMNYNAFKQDLGAIKQGQLNSLEFAQKWHSQA 237 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 + + + + A + L +A+ + + L++ I Sbjct: 238 HQSLGWLQLMLQQK---TAQATDKKESLRFLAVSDFVSQQMQRIHHQGTNKRLVLSQVID 294 >UniRef50_B2S5K7 Replication factor C conserved domain protein n=38 Tax=Proteobacteria RepID=B2S5K7_BRUA1 Length = 360 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 125/364 (34%), Gaps = 48/364 (13%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG--- 74 + G + + LA GR+HHA LF G +G+GK ++A LA + P Sbjct: 26 LAGHDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEAPETLIA 85 Query: 75 ---VCDNCREIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPARGRFKV 122 R+I G ++ I VE+ R + + + +++ Sbjct: 86 PDFSKPLWRQIAGGMHPAVLHITRPFDQKTGKFRTAITVEEIRRVTHFLTRTASDHAWRI 145 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D ++R++ NALLKTLEEPP F+L + +L TI SRC K LD E Sbjct: 146 VIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFKPLDGET 205 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L H ++ I+ ++L + +EGS+R A +S + Sbjct: 206 LGRALSHAGSKAGISAGDIT-EVLLQRSEGSVRK---------ALLLLAHGGLEISDTVD 255 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L +A + L M +++ A Sbjct: 256 QIIAGSIFDLPKA----------QALGGILNGREAEVQY-----ELFRDYLMGRIAAEAR 300 Query: 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362 + + AR + + Y DRR V + L + Sbjct: 301 RYADSGQLREADQWARFWS--------DLIRETVEAETYNLDRRQSVVILLEKTHRAFRT 352 Query: 363 MPLP 366 P Sbjct: 353 GVPP 356 >UniRef50_UPI0001C3368A DNA polymerase III, delta prime subunit n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3368A Length = 317 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 31/236 (13%) Query: 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 F ++GQ T L + +I AYLFSG GVG+ AR K + + + Sbjct: 3 NFQHLIGQTQSTTLLKQIIIKNKIAPAYLFSGPTGVGRRLAARSFCKSIFSLSKVLQE-- 60 Query: 74 GVCDNCREIEQGRFVDLIEI-----------------------DAASRTKVEDTRDLLDN 110 I G DL I +++ + +++ R++ + Sbjct: 61 NQTTLEHRILNGNHPDLYWIEPTYQYKGKLFTIRQAQENGLKSNSSPQIRIDQIRNITNF 120 Query: 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 + P V +I+ M++ + N LLKTLEE L+ + L T++SRC Sbjct: 121 LSRPPLESIRSVVIIESAEMMTEAASNGLLKTLEEAKLATIILIVSNQ-NLLLPTLVSRC 179 Query: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 L + ++ L + E+I +E + + + ++GS A+ +Q Sbjct: 180 QIIPFYNLSEKDLKQVLRK-SDYENIINE----EKIIKLSQGSPGKAIGYWNQLQL 230 >UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D8G6_MYXXD Length = 444 Score = 132 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 49/328 (14%) Query: 5 VLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T + +GQ H+L L + I + LF G GVGKT++AR++A G Sbjct: 19 PLAERMRPRTPDEFIGQSHLLGPGRPLRQLIERKAIVSS-LFWGPPGVGKTTLARMMATG 77 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGRF 120 ++ E I +A + R+++ + R Sbjct: 78 VDAE-------------------------FVILSAVSDGIPRIREVVAEAERLRNQYSRR 112 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DE+H +++ L +E + ++ ++SRC F LK L V Sbjct: 113 TVLFVDEIHRWAKNVQEQALPHVESGLFVLLGATTENVSFEVRPALVSRCRVFQLKELTV 172 Query: 181 EQIRHQLEHI-------LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--Q 231 I+ L L +++ AL LLA+ G +R AL + A + + Sbjct: 173 ADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASLTADGAE 232 Query: 232 VSTQAVSAML----------GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 ++ + + G D +L ++ +N + + + G Sbjct: 233 ITPETAREAVGTSLSRHDKDGDQHYDLLSALQKSCRGSNVQGAVFWAAKLLQTGDVASLW 292 Query: 282 LVEMLGLLHRIAMVQLSPAALGNDMAAI 309 + + + M ++ D Sbjct: 293 RRLKVIAVEDVGMAMPEAISVVRDCEEA 320 >UniRef50_A1RSA3 Replication factor C large subunit n=5 Tax=Thermoproteaceae RepID=RFCL_PYRIL Length = 423 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 114/329 (34%), Gaps = 53/329 (16%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHH-------------------AY 41 M+ K+RP+TF ++V QE LA+ + A Sbjct: 1 MA-IPWVEKYRPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAV 59 Query: 42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV 101 L +G G+GKT+I LA+ + E LIE++A+ Sbjct: 60 LLAGPPGIGKTTIVHALAREIKYE------------------------LIELNASDVRTG 95 Query: 102 EDTRDLLDNVQYAPARGRF--KVYLIDEVHMLSRHSFNALLKTLEEPPEHV---KFLLAT 156 E + ++ + + K+ L DEV L L+T+ E E + A Sbjct: 96 ERIKQVVGRGLREASLFGYEGKLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTAN 155 Query: 157 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 216 + L +LK L + + L I E E AL+ +A+++ G LR Sbjct: 156 NPYDPKFRPLRDIALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRA 215 Query: 217 ALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV---EANGERVMALINEAAA 273 A++ ++SG ++ + + +++ + + R ++ Sbjct: 216 AINDLQMYLSSGKKILTVDDIKRVGERNPQLSMFEILDRVYRARWFDEARAISFNPSFDW 275 Query: 274 RGIEWEALLVEMLGLLHRIAMVQLSPAAL 302 + L + + + ++ ++ L Sbjct: 276 EQY-FLWALETIPTVYKDLELMAIAYDRL 303 >UniRef50_Q39TA1 DNA polymerase III, delta subunit n=5 Tax=Geobacter RepID=Q39TA1_GEOMG Length = 334 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 95/351 (27%), Gaps = 38/351 (10%) Query: 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 + L G I Y F G + L + Sbjct: 3 IDEFNKALDRGEISPLYYFHGDEPHLMERAVKRLMDSAVPPD----------------FR 46 Query: 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 +D+ + K ++ + Q P ++ L+ LS + L + Sbjct: 47 DFNLDVFYGN---ECKGDEVASV---AQTLPMFADRRMVLVKRAGDLSAAALEILASCVA 100 Query: 145 EPPEHVKFLLA---TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 +PP + +K + + K Q+ + EP Sbjct: 101 DPPPTTCLVFMGEKVDQRKKFFQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPA 160 Query: 202 ALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 A ++L +L + + ++ +S + V ++ + L A+ E Sbjct: 161 AAEMLVYLVGNNLGELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGER 220 Query: 260 NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMV---------QLSPAALGNDMAAIE 310 N + + + G LL + ++ V Q + L Sbjct: 221 NVVKALRSLATILRDGEAPLMLLAMIARHFRQLWRVRDLMAQKVPQQDISRLAGINPYFI 280 Query: 311 LRMRELARTIPPTDIQLYYQTLLIGRKELP--YAPDRRMGVEMTLLRALAF 359 + AR ++++ ++ L L A + +E ++ Sbjct: 281 KGVMAQARNFSASELKKVFEGLYATDLALKGGGAKRPTLTLEKLVMDVCGM 331 >UniRef50_Q6MN02 DNA polymerase III, delta subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN02_BDEBA Length = 336 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 97/346 (28%), Gaps = 36/346 (10%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 L G+ Y G + E G Sbjct: 7 QKFYRDLEKGQTAPMYFLFGEEPYLLNQSVERFKYAVLTE-------------------G 47 Query: 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 + AS V RD ++ + P + ++ ++ E L+ + L LE Sbjct: 48 AVDFNYSLFYASDADVVSVRDAVETL---PMMAQRRLVILKEAQELTDKEWAELEPLLES 104 Query: 146 PPEHVKFLLATTDPQKLPVTIL---SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 P + F++ + K I + K QI + +I + A Sbjct: 105 PVDSTVFVILASRVDKRKKQIRLLLDKADCVEFKKPYENQIPSWINYIAQSLGLTISNDA 164 Query: 203 LQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 + LL + L + + G+ ++ V+ + ++ +A+ E + Sbjct: 165 ILLLHKLVGHHLTEIEGELKKLGEFVGERRIEVADVAQAVSRSKEENVFDFTKAIGENDR 224 Query: 262 ERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG---------NDMAAIELR 312 + + L+ +G ++ + + + ++ Sbjct: 225 VKALELLVHLLDQGQNEIGIVSLVARHVRILLTLKRGMEEGLHGAKLAHFAQVPPYFLES 284 Query: 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAP-DRRMGVEMTLLRAL 357 + AR ++ L K L +P + +E +L+ Sbjct: 285 YLDQARLWTAKKLEQTLVVLSETDKALKSSPLSSHIWLENLVLKTC 330 >UniRef50_Q5M0Z8 DNA polymerase III delta prime subunit n=34 Tax=Streptococcus RepID=Q5M0Z8_STRT1 Length = 291 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 111/300 (37%), Gaps = 18/300 (6%) Query: 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 A+ Q + + + R+ HAYLFSG G +A LA+ C T P Sbjct: 1 MKLAEC--QRKLFEEFSQIIRENRLSHAYLFSGD--FGSLDMAIWLAQSRFCLTPEDGLP 56 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 131 C C CR I QG F D+ ++ + K + R L + G +V++I + + Sbjct: 57 CSHCRPCRLIAQGDFSDVKLVEPQGQIIKTDIIRQLTREFSQSSFEGHAQVFIIRDADKM 116 Query: 132 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 ++ N+LLK +EEP + L T D ++ TI SR F+ + LE +L Sbjct: 117 HVNAANSLLKFIEEPQSQIYIFLLTADDSRILPTIKSRAQLFYFPK-----NKAYLEDLL 171 Query: 192 NEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD--DDQA 249 E + ++LA A+ ALSL+ + + ++L D Sbjct: 172 QREGLLLT--QAKVLADFAK-DETQALSLSKDKKVLDVIDIVERFEQSLLANHDLLYLDV 228 Query: 250 LSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL---HRIAMVQLSPAALGNDM 306 L + + + ++ L L+ + + +S + Sbjct: 229 AKLAVQCSKKSEQEMVWAFLTYQLGKEIQNPQARRWLDLVFKAREMWLANVSFQNAMEYL 288 >UniRef50_Q2FUA8 Replication factor C subunit n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUA8_METHJ Length = 331 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 12/290 (4%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 K+RP TF ++GQE V L + + H + SG G GK++ + + L + Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPH-LVVSGPPGTGKSAAVEVTLRELYGD 61 Query: 66 TGITATPCGVCDNCR---EIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFK 121 T + + + + + + + + + ++ + P FK Sbjct: 62 TWQDNVTIFRTSDLMERGKYALESDERFLHLYRSDESFLSNFKHIISSYASIRPINAEFK 121 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 V L ++ H LS +AL +T+E +F+ TT L I SRCL L + Sbjct: 122 VMLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPLFFTPLSRD 181 Query: 182 QIRHQLEHILNE--EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 IR L I N+ E L+ AA G LR A+ Q + +S Sbjct: 182 IIRDCLNTIQNDIPEPDRVSDDETGLIVAAAGGDLRKAIMYL-QVRVETKIPFNPDTLSR 240 Query: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEA-AARGIEWEALLVEMLGL 288 ++ L+L AM + + + +G+ ++ +L + Sbjct: 241 --TDTQEEACLALH-AMKAKDIVAAQKRLQDLMITQGLSGREIISTLLQV 287 >UniRef50_C3N5N1 Replication factor C large subunit n=12 Tax=Sulfolobaceae RepID=RFCL_SULIA Length = 405 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 37/292 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLS---LGRI-HHAYLFSGTRGVGKTSIARLLAKG 61 K+RP++ DV Q+ L + G+ A L G GVGKT++A LA Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHD 63 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 N E ++A+ K++D + + + Y G Sbjct: 64 YNLELLE------------------------MNASDSRKLQDIKSVAEKASVYGSIFGTR 99 Query: 121 -KVYLIDEVHMLSRHSFNALLKTLEEPPEHVK--FLLATTDPQK-LPVTILSRCLQFHLK 176 K+ L+DEV ++ ++ + E E K ++ DP + ++ L Sbjct: 100 GKLILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDPWNPALRELRNKTKMVGLN 159 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 L +R L+ I E I + AL + +EG R A+++ Q I G G+V+ Sbjct: 160 KLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINML-QGIGEGYGKVTLDL 218 Query: 237 VSAMLGTLDDD-QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 V AM + + + + A N A + I+++ L+ + Sbjct: 219 VEAMARRKERELDPFETLRDIFWARY--AWQAKNAATSAQIDYDMLIRWISE 268 >UniRef50_B6FTL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTL2_9CLOT Length = 121 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 66/116 (56%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 L +RPQT ++VVGQ + L ++ + AYLF+G RG GKTSIAR+LA+ + CE Sbjct: 2 LYTTYRPQTLSEVVGQTENILTLKKQMTQNKFDSAYLFAGHRGTGKTSIARILARSICCE 61 Query: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 121 PC C +CR + +D +E+DAAS V D ++L++ Y P + K Sbjct: 62 HPTENGPCNHCKSCRSMLNNTAIDFVELDAASNNSVNDIKELINQTMYMPTNLKKK 117 >UniRef50_B9E8W7 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E8W7_MACCJ Length = 306 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 124/336 (36%), Gaps = 40/336 (11%) Query: 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR-EIEQ 84 L + ++ HAYLF G+ A + A + CG + C I Sbjct: 2 QQLMQAIKNNKLSHAYLFEGSNKQALKEEAIIFASAII---------CGDDEVCHTRIAA 52 Query: 85 GRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 143 D ++ + K E + L + P G +KVY+I + ++ N++LK L Sbjct: 53 HNHSDFFIMETDEATIKKEMIEEALHKMNQKPIEGSYKVYIIVDFDKVTTQGENSILKFL 112 Query: 144 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL 203 EEPP + LL T+ P ++ TI SRC ++ Sbjct: 113 EEPPGNTIALLLTSAPNEILPTIHSRCQHISVQNRQD----------------------- 149 Query: 204 QLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGER 263 +L +E L + + S D +S G + Q ++ ++ ++ + Sbjct: 150 -ILLTLSEQIPTPLLMTLSKLMMSEDEAISW-YTEKNFGEI-RSQVVNWLQTLLNGDMMG 206 Query: 264 VMAL--INEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 ++ + + + + + L + L I +QL+ ++ + E+ ++ +++ I Sbjct: 207 LIQVSQLQSYISERVYQQIALDMVQLFLQDILYLQLNEQSV-SSYPDYEVAIQRISQKIT 265 Query: 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 357 + L +++L + + E ++ + Sbjct: 266 IQQSINMIEAALNAKQKLLQYVNAALVFEQMAIKIV 301 >UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6CD04_YARLI Length = 626 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 36/270 (13%) Query: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 + L RPQT D+ GQ+ ++ L ++ GRI + +F G GVGKT++AR+LAK Sbjct: 122 HTPLPELCRPQTLDDISGQKELMAVLRRFVAYGRIP-SIIFWGPPGVGKTTLARILAK-- 178 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF-K 121 + +A++ V D + ++D + Sbjct: 179 -----------------------TSGNRFVELSATQNNVADVKKVIDQANNEWKLLKRGT 215 Query: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181 + IDE+H S+ + LL +E+ + +L + SRC LK L ++ Sbjct: 216 ILFIDELHRFSKAQQDVLLPAVEKGDITLIGATTENPSFRLVGALTSRCRVLTLKKLSMK 275 Query: 182 QIRHQLEHILNEEH------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 I+ +E L + + + + +A A+G +R AL++ + ++ D + + Sbjct: 276 DIKEVVERSLVKYNDTAEHEVILPTEVIDYIAGIADGDVRSALNILELVVSVCD--IVEE 333 Query: 236 AVSAMLGTLDDDQALS-LVEAMVEANGERV 264 + ++ EA + Sbjct: 334 QPEKAVEEEKPEETKDTTTEACAANDTTDA 363 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 4/47 (8%), Positives = 18/47 (38%) Query: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGL 288 G D + +++ ++ + + + + G + + M+ + Sbjct: 428 GDNHYDAISAFHKSIRGSDPDATLFYLGKMLKSGEDPLYIARRMVRI 474 >UniRef50_UPI000038309A COG2812: DNA polymerase III, gamma/tau subunits n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038309A Length = 451 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 146/403 (36%), Gaps = 17/403 (4%) Query: 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 + ATT+ +K+PVTILSRC +F L+ ++ + + L+ I E + E AL + RAAEG Sbjct: 1 MFATTEIRKVPVTILSRCQRFDLRRVEADVLSAHLKKICAAEAVEAEDEALAAITRAAEG 60 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAA 272 S+RDALSL DQAI+ G G V+ V MLG D + + L EA++ + A + Sbjct: 61 SVRDALSLLDQAISHGAGAVTAAGVRDMLGLADRSRIVDLFEAVMRGDVPAAFAELRAQY 120 Query: 273 ARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMR--ELARTIPPTDIQLYYQ 330 G + +L ++ G H + ++L A + + R+R + A +P + +Q Sbjct: 121 DAGADPAVVLSDLAGFTHLVTRLKLVQGAEADPTLSEAERVRGAQFAGRLPVRALSRAWQ 180 Query: 331 TLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVP 390 LL E+ AP EM ++R E ++ + Sbjct: 181 ILLKALPEVQAAPRPLAAAEMAIVRLAYAADLPTPDEALRQLRADIAGSEGGAPPA---- 236 Query: 391 PQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL 450 + P A + + + AA Sbjct: 237 -----------SRPSLGRDGGPGAMLSHGSAALQMAPPPRPALTSVPVTASLPEAAPRPA 285 Query: 451 ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA 510 + D + R + +A A ++ A + + A T Sbjct: 286 PAEPDGPRLRRFEDVVAQAEAARDIALKVALERDVHLVRFEEGRIEFRLAQGGRATLAND 345 Query: 511 AKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVC 553 A +A W VS+ + + A + NA Sbjct: 346 LARALDAWTGRRWVVAVSKDEGAPTLAENVRQAEQTRHQNAAA 388 >UniRef50_D1N6G5 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6G5_9BACT Length = 353 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 73/351 (20%), Positives = 116/351 (33%), Gaps = 32/351 (9%) Query: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 +++ L N R+ HA+L + A +LA+ C PC VC CR+ Sbjct: 12 PALVSHLENARKHHRLAHAFLVHADTERARREFAVVLAQIAACPDSREGRPCTVCRVCRQ 71 Query: 82 IEQGRFVDLIEIDAASR---TKVED--------TRDLLDNVQYAPARG-RFKVYLIDEVH 129 +EQG + + + + K+ + R + G KV +I + Sbjct: 72 LEQGTYSEFYTLSPVGKMYFIKIGERGKPEPNTLRYFEEQFHLTSTGGANRKVGVIYDAD 131 Query: 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 ++ S NALLKTLEEPP +L T +P L T SRC Q L E Sbjct: 132 RMNDESQNALLKTLEEPPPETLLILTTGNPASLLPTTRSRCQQISLLTNRCEF------D 185 Query: 190 ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQA 249 +E + AL L A G L A + Q I G S G + Sbjct: 186 FAGKEQV---FAALGALFFEARGDLAKAEAGAAQLIQVASG-----LNSDAGGRTAGEWT 237 Query: 250 LSLVEAMVEANGERVMALINEAAARG-----IEWEALLVEMLGLLHRIAMVQLSPAALGN 304 L A + V + +AA E L + ++ + Sbjct: 238 ARLTAAAQTGDPALVKRVEQQAADAAAGAYMKERGQFLTAIQTFCQQVFQLSEGIRFDQL 297 Query: 305 DMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLR 355 I + +L I P + + L + + + + + Sbjct: 298 ANPEIFAGI-DLPEKIAPARGAVALREAEELLFTLRFNVNEELALRTFAVN 347 >UniRef50_UPI0001C419FE replication factor C large subunit RfcL n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C419FE Length = 530 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 101/291 (34%), Gaps = 37/291 (12%) Query: 6 LARKWRPQTFADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGL 62 K+RP+TF +VVG + + L G L G G GKT+IA ++A Sbjct: 3 WVDKYRPKTFKEVVGNNKQKKVIEDWLQSWQDGNPQKPLLLIGPAGTGKTTIAHIIANE- 61 Query: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFK 121 F + IE++A+ + + + ++ G K Sbjct: 62 ------------------------FSEYIELNASDKRSQDVLMSTIGESATTKSLFGENK 97 Query: 122 VYLI----DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 +I D +H + + L + + + ++A TI + Sbjct: 98 KLIIMDEVDGIHGTNDRGGTSALNKIIKNSKQPIVMMANDFYSNKLTTIKKNAQVIKMDK 157 Query: 178 LDVEQIRHQLEH-ILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + I L +L E I +P L L++ + G LR A++ QA+ G+++ + Sbjct: 158 IRAPTINKFLRDVVLKNEGIEVDPDVLMKLSKRSSGDLRSAINTL-QALVENGGELTEET 216 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLG 287 + + + V ++++ + + + ++ + Sbjct: 217 LDTTGQKDNTATVIDTVTRVLKS--TNAINVKRSLRENNEDPTLVMEYIAE 265 >UniRef50_B6YXU0 Replication factor C, large subunit n=2 Tax=Thermococcus RepID=B6YXU0_THEON Length = 500 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 107/333 (32%), Gaps = 54/333 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSL---GRIHH--AYLFSGTRGVGKTSIAR 56 S K+RP+ +++V Q L + + G A L +G+ G GKT+ Sbjct: 6 SDVPWVEKYRPRRLSEIVNQNKALEQVRAWIEAWLHGNPPKKKALLLAGSPGTGKTTTIY 65 Query: 57 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 116 LA+ E +IE++A+ E + Sbjct: 66 ALAREYGFE------------------------VIELNASDERTYEKIERYVQAAYTMDI 101 Query: 117 RG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 G R K+ +DE + + K +++ +++ ++P I ++ Sbjct: 102 LGKRRKLIFLDESDNIEPSGAREIAKLIDK--ARNPIIMSANHYWEVPREIRNKAQIVEY 159 Query: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 K L I L IL E + LQ +A+ A G LR A++ ++ G + Sbjct: 160 KRLSQRDIMKALIRILKAEGVTVPKEILQEIAKRANGDLRAAINDLQTVVSGG-----IE 214 Query: 236 AVSAMLGTLD-DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 +L D + + + + + + A G++ E+L + Sbjct: 215 DAREVLAYRDVEKSVFQALAQLFATDNAKR----AKLAVLGVD--MFPNELLQWI----- 263 Query: 295 VQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 + + + DI L Sbjct: 264 -----DENLPYVYYKPEDIARAYEALSRADIYL 291 >UniRef50_Q1GTQ0 DNA polymerase III, delta prime subunit n=1 Tax=Sphingopyxis alaskensis RepID=Q1GTQ0_SPHAL Length = 326 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 114/270 (42%), Gaps = 22/270 (8%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------T 71 ++G + A +G GR+HHA+L +G +G+GK A A+ L Sbjct: 1 MIGHQEAEKAFLDGWQGGRLHHAWLLAGPQGMGKGDFAERAARFLVTHGAGGGRAAVALD 60 Query: 72 PCGVCDNCREIEQGRFVDLIEI---------DAASRTKVEDTRDLLDNVQYAPARGRFKV 122 G R ++ G ++I + + A ++ R ++ + + + G ++V Sbjct: 61 DRGDDAAARLVDAGNHPEIIRLTRQPKDKTKELARNITIDQVRQVIRRLHLSLSLGDWRV 120 Query: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182 ++D V L NALLKTLEEPP FLL + P +L TI SRC + +D + Sbjct: 121 IIVDAVDDLESDGANALLKTLEEPPARTLFLLVSHSPGRLLPTIRSRCRILRFQPIDRDV 180 Query: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242 + L + + ++ + A+ G AL+L D +AS ++ A G Sbjct: 181 MVSWLHDL----RPMLDMPEVRAIVAASGGVPGKALALIDSDVASMQKKL---LAIAASG 233 Query: 243 TLDDDQALSLVEAMVEANGERVMALINEAA 272 ++ +L + A+ + L+ + Sbjct: 234 DPENRLREALAREVGGASNRARLELVIDIV 263 >UniRef50_B7VLY9 DNA polymerase III delta' subunit n=5 Tax=Vibrionales RepID=B7VLY9_VIBSL Length = 321 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/340 (18%), Positives = 117/340 (34%), Gaps = 38/340 (11%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 V + L R ++ + + G+G ++ L L C + CG C +C ++ Sbjct: 11 VWSEWKKSLDAERFPNSVIVNAPEGLGVEALVSQLTDALMCVNYE-SEACGFCHSCELMK 69 Query: 84 QGRFVDLIEIDAAS---RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL 140 G D I+ V+ R Q + G +V L++ ++ + NALL Sbjct: 70 SGSHPDFHVIEPEKEGKSITVDQVRASNRWAQQSSQLGGLRVILLNPAEAMNESASNALL 129 Query: 141 KTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 KTLEEP + F+L+T + +L TILSRC QF++ ++ L + Sbjct: 130 KTLEEPASNCIFILSTRNSNRLMPTILSRCQQFNVVCPQLDAGSAWL-------NGEVGK 182 Query: 201 RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 Q + + + A ++ DQ V+ +++ Sbjct: 183 TVPQYILTLNDNAPLKAKAMFDQGGV----------------EASTKALDGFVD-VIKGT 225 Query: 261 GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTI 320 ++ E + + L + LL + + AI + L + Sbjct: 226 QPDMLKFSTELSK---DPLIQLSWLWHLLSDVQKLHFG-----LANHAIIPSAKALCEVM 277 Query: 321 PPTDIQLYYQTLLIGRKELPYAP--DRRMGVEMTLLRALA 358 LLI ++L P + + + L+ Sbjct: 278 SYQSAYAASNKLLILIEQLKQHPGLNTELLIMNWLIATCE 317 >UniRef50_B0S906 DNA polymerase III gamma and tau subunits n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S906_LEPBA Length = 310 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%) Query: 14 TFADVVGQEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 +F V GQ+ LT + + L +I + +F G GVGK A A+ + C T Sbjct: 7 SFEQVSGQDVALTYIKSFLKDRSKIPGSLIFYGPDGVGKWLAAERFARQILCLE---GTS 63 Query: 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVE--------DTRDLLD-NVQYAPARGRFKVY 123 CG CD+CR+ +G D I+ + R LL + + P +++ Sbjct: 64 CGHCDSCRQFMRGIHPDFIQFPRRKNIAIGKEKDPEEFTIRWLLSARIPFKPHTSDYRIV 123 Query: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 L E + ++ + LLKTLEEPP H KF+L D L TI+SR + L ++I Sbjct: 124 LFPEANRINNEAETTLLKTLEEPPPHTKFILIVNDLHNLKQTIVSRSVCIPFHYLPQDEI 183 Query: 184 RHQLEHILNEEHIAH 198 + + + E + + Sbjct: 184 KKIRRNEIAEAKLYY 198 >UniRef50_C4R299 Protein with DNA-dependent ATPase and ssDNA annealing activities involved in maintenance of genome n=1 Tax=Pichia pastoris GS115 RepID=C4R299_PICPG Length = 525 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 105/324 (32%), Gaps = 81/324 (25%) Query: 1 MSY-QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGV-----GKTSI 54 MS LA + RP+T + VGQ H++ G GV GKTS+ Sbjct: 106 MSAKLPLAERLRPKTLEEYVGQSHLV-------------------GPTGVLRGSNGKTSL 146 Query: 55 ARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY- 113 AR++A + +A+ + + + R + + + Sbjct: 147 ARIIAA-------------------------STHNRCVELSATSSGISECRKVFEEARNE 181 Query: 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 R V DE+H ++ +A L +E + +L +LSRC F Sbjct: 182 MRLTKRRTVLFCDEIHRFNKSQQDAFLPYVERGDIILIGATTENPSFQLNSALLSRCRVF 241 Query: 174 HLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQLLARAAEGSLRDALSLTD 222 L LD E + + L + + +LQ + A G R AL+L + Sbjct: 242 VLNKLDNEDLAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALNLVE 301 Query: 223 QAIASGDG---------QVSTQAVSAML----------GTLDDDQALSLVEAMVEANGER 263 + +V + +L G D + +++ +N + Sbjct: 302 MVDSHYQKNDDTTAASVEVDPSTLREVLRSTHAVYDRVGDQHYDAISAFHKSVRGSNVDA 361 Query: 264 VMALINEAAARGIEWEALLVEMLG 287 + + G + + M+ Sbjct: 362 TLYYLARMLHGGEDPLYISRRMIR 385 >UniRef50_Q0APP2 DNA polymerase III, delta prime subunit n=1 Tax=Maricaulis maris MCS10 RepID=Q0APP2_MARMM Length = 349 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 117/279 (41%), Gaps = 25/279 (8%) Query: 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITA 70 P+ D+ G E A A GR+HHA++ +G RGVGK S+A A+ + A Sbjct: 18 PRERYDLFGHEAAERAFATAWDSGRLHHAWMITGPRGVGKASLAWRAARRVLGARPMPEA 77 Query: 71 TPCG---VCDNCREIEQGRFVDLIEIDAA---------SRTKVEDTRDLLDNVQYAPARG 118 P G C+ IE DL+ + VE+ R + + G Sbjct: 78 GPLGTSAEDPVCKVIEAQATPDLLVLRRPWDDKRKRWRGEITVEEARRAPHFFEMSSGGG 137 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 ++V ++D ++ ++ NALLKTLEEPP+ L T P +LP TI SRC + L+A Sbjct: 138 GWRVCIVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRLALRAP 197 Query: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 D++ LE A + A +R A G+ AL+L +G G V+ Sbjct: 198 DIDATAEWLEQTGG----AADTGAAMAASRLAGGAPGRALALI-----AGGGVELAADVN 248 Query: 239 AML---GTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 ++ D L E + E + L E A Sbjct: 249 LLVDRGAAASDADIRKLAERLSLKGQEEMRDLFYEVLAN 287 >UniRef50_A7AYS1 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A7AYS1_RUMGN Length = 337 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 39/341 (11%), Positives = 99/341 (29%), Gaps = 41/341 (12%) Query: 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 +D++ ++ +L L G+ YL G K K + Sbjct: 7 SDII---EIMKSLNEDLKTGQFSQIYLLYGEENYLKKQYKERFVKAML------------ 51 Query: 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS 135 QG ++ + + R+++D + P ++ + + L + S Sbjct: 52 -------PQGDTMNYAYYEGKGV----EIREVIDLAETLPFFAERRLIVFENT-GLFKSS 99 Query: 136 FNALLKTLEEPPEHVKFLLAT---TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 L + ++ PE F+ KL + ++ L D ++ + + Sbjct: 100 GADLAEYIKTMPETTYFIFVEEEVDKRSKLYKAVKAKGHIVELPFQDESTLKRWILGNVR 159 Query: 193 EEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQAL 250 E ++ +++ ++ ++ + + A+ + Sbjct: 160 REGKQISDASVGYFLGKVGTDMQNIQGELEKLFCYTLHRDVITPEDIDAVCINQIGNHIF 219 Query: 251 SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP---------AA 301 +V A+ E + + L E A +L ++ + VQ AA Sbjct: 220 EMVNAVAEKKQRKALDLYYELLALKEPPMRILFLLVRQYRILFHVQSLQKKGYGKKEIAA 279 Query: 302 LGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYA 342 + E R +++ + + + Sbjct: 280 KAGLHPFAAGKYMEQTRYFKSEELRAVLEESADLEERVKTG 320 >UniRef50_Q482J4 DNA polymerase III, delta prime subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482J4_COLP3 Length = 331 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 121/338 (35%), Gaps = 40/338 (11%) Query: 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----------I 68 + E + L+ + HA + G G G+ ++A+ L + L C+ Sbjct: 4 ICHEKQVQ-LSRQYQQDTLAHAIIIQGIEGAGQGALAKWLIELLICQNPLSTTNAAGTET 62 Query: 69 TATPCGVCDNCREIEQGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 127 + CG C C + + D + + + V+D R ++ G+ K LI + Sbjct: 63 ISEACGQCKACLLKKSDNYPDHLLLKSENKTLGVDDIRRGNAFLEKTAHLGKVKTILIPQ 122 Query: 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 187 +++ + NALLKTLEEP + +L T D L TI+SRC + ++ + E + QL Sbjct: 123 AQVMTIAAANALLKTLEEPSANSYIVLITDDLDSLLPTIISRCAVYAIRPMIGEALLAQL 182 Query: 188 EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDD 247 + + N + A L A + LS +++ + V + Sbjct: 183 K-VSNLGDVQLSSSA--PLTNKANDTAYINLSHL--------PELTDKIVHQEFQVFNQY 231 Query: 248 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMA 307 L++ ++ E L+++ L L+ +V + L Sbjct: 232 ----LLDYLLHGQSEE--KLLSQIVDNKYSLRWLEKITCNLMREYYLVNATDQTLLLIK- 284 Query: 308 AIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDR 345 + I + YQ ++ K + Sbjct: 285 ----------QKISVQVLNQIYQAIITSNKLIKSYLQA 312 >UniRef50_B7CCD0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCD0_9FIRM Length = 304 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 14/220 (6%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNC 79 Q V L+N L R+ +AYLF G +G K A L A+ + CE C C++C Sbjct: 10 QPVVYQMLSNALKNQRVANAYLFHGPKGSSKLETAILFAQSIICEHTDNDGFACQECESC 69 Query: 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAPARGRFKVYLIDEVHMLSRHSFNA 138 + IE +D + + R K +D DL + + ++Y++D + + N+ Sbjct: 70 KRIENEESLDYMIVSN-DRIKKKDIVDLQTFFESTSAGKQNARIYILDHYDKATPDASNS 128 Query: 139 LLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 198 LLK LEEP E + +L + + TI SRC H K E H L +EE+ Sbjct: 129 LLKFLEEPSEGIYGILIADEKSNVLPTIQSRCQAIHFKP---ESCEHLLLENTSEEN--- 182 Query: 199 EPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 ++LA + + A+ L Q++ + + Sbjct: 183 ----AKMLAE-SGYTYDKAIELLSLPDFEELKQIALEYIE 217 >UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC7_9GAMM Length = 437 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 51/310 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 + LA + RP++ A+ +GQE +L +A L + H+ +F G GVGKT++A LLA Sbjct: 7 RPLAARMRPRSLAEFIGQERLLGPAGPIAAMLRQKSL-HSLVFWGPPGVGKTTLAHLLAA 65 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 E + A + V + R RG Sbjct: 66 EQGAEVLTLS-------------------------AVDSGVRELRAAAAVATERRGRGES 100 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V IDE+H ++ +ALL LEE + L +LSR + L+ L Sbjct: 101 TVLFIDEIHRFNKTQQDALLPHLEEGTLTLIGATTENPSFALVGALLSRIRIYVLEPLGQ 160 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIAS-----G 228 E + LE L++ + A L A+G R L++ D A+ G Sbjct: 161 EALAAILERSLHDRERGLGDLAVELPDSARAQLLAQADGDARRLLNILDLAVQLAPLHDG 220 Query: 229 DGQVSTQAVSAMLGTLD----------DDQALSLVEAMVEANGERVMALINEAAARGIEW 278 ++ T ++A G D+ +L +++ ++ + + + G + Sbjct: 221 RRRLDTPVLAAAAGQAWRHFDKGGEHFYDEISALHKSLRGSDVDASLYWLARMLDGGADP 280 Query: 279 EALLVEMLGL 288 L ++ + Sbjct: 281 LYLARRLIRV 290 >UniRef50_C5NX73 DNA polymerase III subunit delta' n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX73_9BACL Length = 278 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 19/258 (7%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT--PCGVCDNCRE 81 V+ +L N L ++ HAYL G + K + C C C NC Sbjct: 9 VIKSLTNTLKTDKLSHAYLIVGEDSLYSDEFILSFVKAIFCLENKDKEFYSCENCKNCNS 68 Query: 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 I G +VD ++ + + K ++ + L ++ G+ K+Y I ++ ++ + N+LLK Sbjct: 69 INHGNYVDFYKLSSETSIKKDEIQTLKSDLSVKSFYGK-KIYWIKDIEKMTEQAANSLLK 127 Query: 142 TLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 LEEP + + +L+ + + TI+SRC Q L I + EHI E Sbjct: 128 FLEEPEDDIIAILSCKNISAILPTIISRCQQVKL--------------IGHSEHIEIEQN 173 Query: 202 ALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANG 261 +L+A E R I + S V L + S + + ++ Sbjct: 174 E-ELIAITNEYVKRYMRKPHLANIYLLEKLKSKDEVVEFFNYLSMKVSKSYSDEI-ASDV 231 Query: 262 ERVMALINEAAARGIEWE 279 + + + + Sbjct: 232 VNISKVQEKILQAQADLN 249 >UniRef50_Q8D3A6 HolB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3A6_WIGBR Length = 329 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 45/341 (13%), Positives = 105/341 (30%), Gaps = 47/341 (13%) Query: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 M Y+ L + +R ++ + L G G ++ + K Sbjct: 1 MLYEWLVKPYR--------------EIISYYIRSNT-SSVILIQSNTGCGIKNLYLYIVK 45 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVEDTRDLLDNVQYAPA 116 + C C C +C I++ D I + ++D R + N+ Sbjct: 46 RILCLKPNNFISCNNCKSCNFIKENSHPDFFNILTKNYLKNTIGIDDVRFICKNLLLNSH 105 Query: 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 + KV LI+ + L+ + +ALLKTLEEP F+L + + +I+SR + + Sbjct: 106 LNKGKVILIENLEKLTNQASHALLKTLEEPTIKTYFILGCKNIYCILPSIISRSQIWKVI 165 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 + + L ++ + + + + S A + ++ Sbjct: 166 INKKDSL-----KWLEKKGHDVNSKKVIISLKLCNWSPVIANKIILSNFWKERKKL---- 216 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 +L + + + + + + L+ Sbjct: 217 ------------IFTL-NNIFLKK-----EIAFSLLEYFKKIDMFFLILRSLILDTIKYN 258 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK 337 + ++ +++ + ++ LL +K Sbjct: 259 SNIM-FNIINYDCFYLIKNISKNFSSEYLYEQWKFLLNFKK 298 >UniRef50_D1ARJ9 DNA polymerase III gamma/tau subunits-like protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARJ9_SEBTE Length = 382 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 118/272 (43%), Gaps = 25/272 (9%) Query: 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 ++ L N + + +YLF G + V A +K CE CGVC+ C+ ++ Sbjct: 11 LIDRLINEAAKDKESASYLFYGDKRVDLLFYALEFSKLFLCENFKDNDYCGVCNVCKSVD 70 Query: 84 QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT 142 + D+ I+ + K++D R+++ N +P + + KVY+++ V L + S NALLK Sbjct: 71 NYSYPDIEIINKDEQGVKIDDVREIILNAIESPYKAKKKVYILNGVEKLRKESANALLKI 130 Query: 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 +EEPP+++ F+L + + TI SR + F +K L+ E + E Sbjct: 131 IEEPPKNLYFILLSKSLN-IIPTIKSRVMTFVIKP-------------LDIEALEVEKE- 175 Query: 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGE 262 + +G+++D + GQ+S + + + L E ++ E Sbjct: 176 ---IYYFFDGNVKDIELWKKKKQDLSCGQLSLEEIFRNIEV--YYIYNELTELLMRVQAE 230 Query: 263 RVMALINEAAARGIEWEAL---LVEMLGLLHR 291 ++ E +++ + E+L + Sbjct: 231 KLFNDKKEFM-SKPDFKIFKDYIKELLEIYED 261 >UniRef50_UPI000185C1AD DNA polymerase III subunit delta n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C1AD Length = 453 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 64/377 (16%), Positives = 113/377 (29%), Gaps = 65/377 (17%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + HA+LF+G G G++ A A L C CG C+ CR G D+ + Sbjct: 70 MTHAWLFTGPAGSGRSVTATAFAAALLCTRHDNPG-CGECEGCRTALAGTHGDIKIVRPE 128 Query: 97 SRT-KVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 V R +L P +V +I++ L+ + NALLK +EEPP ++ Sbjct: 129 GTIISVATVRDELRPWAYKMPTTADCRVLIIEDADRLNESASNALLKVVEEPPLRTVIIM 188 Query: 155 A--TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 TT+ + VT+ SRC ++ ++ + + L E A + G Sbjct: 189 CAPTTNAEDFSVTLRSRCRHVYVPTPHIDDVANLLR----AERPELTDEQAVWAATVSNG 244 Query: 213 SLRDALSLTDQAIASGDGQVSTQAVSAMLGTL-DDDQALSLVEAM--------------- 256 + A + + V A+ A L + Sbjct: 245 HIGRARGFVSDEGSRAWRGKALDFVEAVFDPAKSYLAARELANEVAGEVKRRMEPLEAEE 304 Query: 257 ------------VEANGERVMALINEAAARGIE-------------WEALLVEMLGLLHR 291 + + + + L +++GL Sbjct: 305 LENLERSLGVGASGKGAQAALRGSKGVIKELEDNQKRRRRRAESDLIDLSLTDIMGLYRD 364 Query: 292 IAMVQLSPA---------------ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR 336 ++ A+ ELAR +PP I + R Sbjct: 365 ALVLAFGAERAGSASGADSEFGNGAVYLINPDRRRTATELARRLPPEAILASIDAVTEVR 424 Query: 337 KELPYAPDRRMGVEMTL 353 L A + ++ + Sbjct: 425 GMLVTAVKLTVLMDELM 441 >UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteria (class) RepID=A1SJC4_NOCSJ Length = 456 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 50/352 (14%) Query: 5 VLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 LA + RP+T ++VGQ + A L + + + L G G GKT+IA ++++ Sbjct: 29 PLAVRMRPRTLDELVGQAQLRAAGSPLRRLVEGDQ-SMSLLLWGPPGTGKTTIAAIVSQQ 87 Query: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQ-YAPARGRF 120 + + A V++ R +D + GR Sbjct: 88 TDRRFVEVS-------------------------AVSAGVKEVRAAIDAARAELAGGGRE 122 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V +DEVH S+ +ALL +E + + +LSR L L++LD Sbjct: 123 TVLFVDEVHRFSKAQQDALLPGVENRWVTLIAATTENPFFSVISPLLSRSLLLRLESLDD 182 Query: 181 EQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQA----------- 224 + +R L+ + +E + + AL L R A G R +L+ + A Sbjct: 183 DDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAALAQGLET 242 Query: 225 --IASGDGQVSTQAVS-AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281 +A+ + V AV G D + ++++ ++ + + + G + + Sbjct: 243 VDLATAETAVDRAAVRYDRQGDQHYDVVSAFIKSVRGSDADAALHYLARMIEAGEDPRFI 302 Query: 282 LVEMLGLL-HRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTL 332 ++ L + + + A + + + Sbjct: 303 ARRLMILASEDVGLADPTALPTAVAAAQTVQLIGMPEAQLTLAHATIALAVA 354 >UniRef50_Q5UQE8 Putative replication factor C small subunit L478 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS2_MIMIV Length = 370 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 122/347 (35%), Gaps = 43/347 (12%) Query: 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 K+RP+ +D + VL L S + H + SG G GK ++ + L + L E Sbjct: 5 EKYRPKKPSDFLFNTDVLRQLKYLASNEDVPH-IIISGPSGSGKKTLVKFLLEFLYDEDV 63 Query: 68 ITAT----PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARG---- 118 +EIE + I I+ S + ++++ + Sbjct: 64 NILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIFKT 123 Query: 119 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 +FK +I + L+ +S AL +T+E + +F++ + K+ + SRC F + Sbjct: 124 KRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVP 183 Query: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 236 +E I +++I E+I + + +L+ A+ + + ++ Sbjct: 184 LPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFLNCKGLNCSPFIALDE 243 Query: 237 VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQ 296 ++ VE+++E G + ++ ++ I + Sbjct: 244 AFDLV-----------VESILECRT-------------GKNIFKIHNDIRTNIYNILITN 279 Query: 297 LSPAALGNDMAAIELRMRELARTIPPTDI-QLYYQTLLIGRKELPYA 342 + + + N + +L R I I Q L + Sbjct: 280 IKGSEIINILVD------KLIRKIDDDVINMNIIQYASKAEYNLTHG 320 >UniRef50_D1KD32 DNA polymerase III, delta prime subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD32_9GAMM Length = 344 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 61/379 (16%), Positives = 122/379 (32%), Gaps = 61/379 (16%) Query: 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 + + L + + HA L +G+ +GK + + L K L CE C C Sbjct: 3 LPWHKKPFAKLKQMIDQNHLPHALLITGSEQMGKFELMQQLVKTLLCEE----ETCDQCV 58 Query: 78 NCREIEQGR---------------FVDLIEIDA--------ASRTKVEDTRDLLDNVQYA 114 CR I + + +++ + +++ R + + Sbjct: 59 LCRAISKDNPKQALDDSVLIRRSHYPNMVYCRTEVNDKGVESKNIRIDQIRAFCEALNKT 118 Query: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 ++ ++ ++ + N+LLKTLEEP E+ +L DP+ LP TILSRC H Sbjct: 119 A--DNLQIGVLFYADQMNISAANSLLKTLEEPRENTLIILLAHDPKNLPATILSRCQSVH 176 Query: 175 LKALDVEQIRHQL-EHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVS 233 + ++ L + I +H + + L G LS GDG + Sbjct: 177 IPPAYDQETEAWLAQRIGEAQHTDFD---VTQLLEHTHGVPFKVLSELS-----GDGFIH 228 Query: 234 TQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIA 293 Q L + +IN+ A+L + L+ Sbjct: 229 YQHWQNQL-----------------LDIAAHPLMINQLEDFEGNEVAVLNCLQNLVIEGI 271 Query: 294 MVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTL 353 ++ G + ++ + + + + + ++ ++ L Sbjct: 272 RLKTLNHEGGLI------ELNKVVKGVDSDFLFKLLSDIYHALGLSKTNVNIKLLLDNIL 325 Query: 354 LRALAFHPRMPLPEPEVPR 372 + P+ P Sbjct: 326 IVWSHITHLKRYPQIINPI 344 >UniRef50_A4XBZ5 DNA polymerase III, delta prime subunit n=38 Tax=Actinomycetales RepID=A4XBZ5_SALTO Length = 427 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 116/365 (31%), Gaps = 53/365 (14%) Query: 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 96 + HA++F+G G G++ AR A L C G CG C C G D+ + Sbjct: 70 MTHAWIFTGPPGSGRSVAARAFAAALQCGHGSG---CGACPGCHTTMAGTHADVRLVVPD 126 Query: 97 S-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 V + R L+ P+ GR++V +I++ L+ + NALLK +EEPP FLL Sbjct: 127 GLSIGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFLLC 186 Query: 156 TTD--PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS 213 P + VTI SRC L+ + L EP A AA+G Sbjct: 187 APSIHPDDISVTIRSRCRVVPLRQPAPAAVAEVLVRR-----DGVEPDVANWAAAAAQGH 241 Query: 214 LRDALSLTDQAIASGDGQVSTQAVSAMLG------------------------TLDDDQA 249 + A L A + G D + Sbjct: 242 VGRARRLARDPQARTRRDAVLAVPRQLTGVGAAIDAAAALIGAAEAEAAALVADTDAAER 301 Query: 250 LSLVEAMVEA----NGERVMA----LINEAA---------ARGIEWEALLVEMLGLLHRI 292 +L A+ + E A+ + LV++ G Sbjct: 302 AALETALGAGGTGRRAASAFRGAAGQVKELERRQKSRATRAQRDALDRALVDLAGFYRD- 360 Query: 293 AMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT 352 A+ A + AR + +L R + R+ VE Sbjct: 361 ALTMALGAPVEPVHTDTATVAGAGARKWEADGALRRLEAVLACRAAIEANVKPRIAVEAM 420 Query: 353 LLRAL 357 +L Sbjct: 421 MLALW 425 >UniRef50_UPI000196B9A7 hypothetical protein CATMIT_00793 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B9A7 Length = 319 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 106/319 (33%), Gaps = 39/319 (12%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 Q L + HA+L G IA +A+ C C CD+C Sbjct: 9 QPIFYRILEKSFKENKKTHAFLLVGDH---TDDIATFIAQSYICHEDTL--ACETCDDCI 63 Query: 81 EIEQGRFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL 139 I++G + D+I D + K D + + + KVY++ + + + N+L Sbjct: 64 RIKEGLYPDMIVCDGKETSIKKSDIDHIQEEFVKSSVENNGKVYILKNIDNATTQAMNSL 123 Query: 140 LKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 LK LEEP E V +L T + K+ TI SRC L + +H LE L E + E Sbjct: 124 LKFLEEPVEEVYAILTTKNINKVLPTIQSRCQVIKLLP----ESKHSLELKLKNEGVDEE 179 Query: 200 PRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA 259 + L ++ D ++ + +E + Sbjct: 180 DAMV----------LPHLFDSIEECNEYKDSELYFDI---------KNYVFYFIEDLYMR 220 Query: 260 NGERVMALINEA----AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE 315 + ++ L + L ++ + + V+ S L +M E Sbjct: 221 PSDLLINLQINLGKKYKKNKEAYALFLNLLVLGMRDMFHVKHSIPVLFVKHKDFFEKMPE 280 Query: 316 LARTIPPTDIQLYYQTLLI 334 I + +L Sbjct: 281 ------DGKILQKIEIILE 293 >UniRef50_C6HUJ9 AAA ATPase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUJ9_9BACT Length = 451 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 105/310 (33%), Gaps = 50/310 (16%) Query: 4 QVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 L + RP + D+VGQE +L ++ GR LF G G GK+ LL + Sbjct: 13 VPLPYRMRPSSLEDLVGQEALLGPQGLFRRFIAEGRWPSMVLF-GPPGTGKSGFVELLPR 71 Query: 61 GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120 L A+ V D R L + G Sbjct: 72 LL------------------------SDHTFAHLNATTAGVADLRPELARGERRRREGGQ 107 Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180 V ++DE+H S+ LL +E + L TT L + SR L F + LD Sbjct: 108 HVVVLDEIHTWSKSQQEVLLSGVETGQIILLGLSNTTPYAALIPPLASRLLLFPFQPLDE 167 Query: 181 EQIRHQLEHILNEEH-------IAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG--- 230 + L+ L+ + +P A LL R + G R L + A+ G Sbjct: 168 NALSTLLDRGLHRLARETHGPPLQLDPAARSLLVRYSGGDGRRLLLALESAVLMASGRGG 227 Query: 231 ---QVSTQAVSAMLG---------TLDDDQALSLVEAMVEANGERVMALINEAAARGIEW 278 +V + V A+L D + ++++ + + + + G + Sbjct: 228 EEFRVGEEDVLAILSRAGQVYGDKDSHYDTISAFIKSVRNYDPDAALHWLARMIEGGEDP 287 Query: 279 EALLVEMLGL 288 + ++ L Sbjct: 288 LYIARRLVIL 297 >UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LS10_PICSI Length = 721 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 41/242 (16%) Query: 2 SYQVLARKWRPQTFADVVGQEHVLT---ALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 S L+ + RP +VVGQ+H+L L + L R+ + +F G G GKT++AR + Sbjct: 203 STAPLSERMRPLLVDEVVGQDHLLGKNCILRSLLECDRVP-SIVFWGPPGTGKTTLARAI 261 Query: 59 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 A ++ + A + +++ R++L+ + G Sbjct: 262 ANSVSYRFSSVS-------------------------AVTSGLKEVREVLEEAKRMKKMG 296 Query: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 + ++ +DEVH ++ +A L +E+ ++ +LSRC L L Sbjct: 297 QRTLFFVDEVHRFNKAQQDAFLPVVEDGSIVFIGATTENPSFEVNNALLSRCRVLTLNKL 356 Query: 179 DVEQIRHQLEHILNEEH------------IAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 E IR LE +++ + E A++ L+ A++G R AL++ + A + Sbjct: 357 QPEHIRKLLERAVSDSDKGLMVSLKGFSAVKVEVEAIEFLSCASDGDARVALNVLEIAAS 416 Query: 227 SG 228 + Sbjct: 417 AA 418 >UniRef50_B6BTX6 DNA polymerase III, delta subunit, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BTX6_9PROT Length = 314 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 125/345 (36%), Gaps = 47/345 (13%) Query: 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNC 79 Q H +++ + +LF G+G + L K L CE C C +C Sbjct: 7 QYHSSAFISDLIKTQT----HLFVAEEGIGANQLLENLLKKLLCENLTDENKTCNTCPSC 62 Query: 80 REIEQGRFVDLIEIDA-----ASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSR 133 R ++ ID + ++ R+L ++ A + K+ I H L+ Sbjct: 63 R-YLVDEHPNIRLIDKNLELKSDVITIDQIRELSSFIELASTSEHDKKIIFIKNTHYLTS 121 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NALLK LEEPP + F+L T++ K+ TI SR L + +Q L+ Sbjct: 122 SAANALLKNLEEPPNNTFFILLTSNLHKILPTIRSRATIHKLASPTNKQCEDYLKDE--- 178 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 P A++ L AE A+ + + + + S+V Sbjct: 179 -----HPEAIKFL-DLAERKPFLAIQMAN----------------------NKELINSIV 210 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 + +M + A G + + M + +A + + + ++ Sbjct: 211 NIFLRGKSFDMMDVNESLLASG--PQFFVDMMQKWIADLAHFKEF--STVYYYKNLLDQI 266 Query: 314 RELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 ++ + ++ +Y+ L+ R+ ++ + ++ ++ Sbjct: 267 ELISNQLSYKELLNFYKKLIEYRRLSETTINKSIALDNLMIDYKR 311 >UniRef50_UPI0001C31D46 DNA polymerase III, delta prime subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D46 Length = 373 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 117/380 (30%), Gaps = 53/380 (13%) Query: 21 QEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 + L L+ GR HAYLF G G GK AR A L E Sbjct: 10 HPNARATLGAALAPGGRPSHAYLFHGPSGSGKRVAARAFASALLAEGSADPD-----SAR 64 Query: 80 REIEQGRFVDLIEIDAAS--RTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSF 136 +E G DL + + V D + ++ P +V++I+ L + Sbjct: 65 TRVEHGTHPDLTWVTPSGAHEMLVGDIEEPVVAAAAMTPFESARRVFVIERADTLIDQAA 124 Query: 137 NALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 N +LKTLEEP V +L T ++ TI SRC AL EQ+ ++ Sbjct: 125 NKMLKTLEEPAPFVHLVLLTDRLAEVLPTIRSRCQLVRFDALTDEQLAERVGR------H 178 Query: 197 AHEPRALQLLARAAEGSLRDALSLTD----QAIASGDGQVSTQAVSAMLGTLDDDQALSL 252 P + +AR A G AL L A G+ + G+ + L Sbjct: 179 GVAPEQARAVARLALGDGARALELALGDGPALRAGGERFARAALAGEVGGSRPWTELL-- 236 Query: 253 VEAMVEANGERVMALINEAAARGIE-----------------------------WEALLV 283 A+ GE +A + A +E + L Sbjct: 237 --AVKRRRGEEAVAELEAKLADELEVVSRRERKRLENEYAERIRRTRRRVETGALDLGLQ 294 Query: 284 EMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAP 343 L A + + A P ++ + + R+ L Sbjct: 295 LSSLWLRDAA-CVAWGTPELVHHTDRTDVLAQDADGRDPQRLRAGVELIEETRRRLRSNV 353 Query: 344 DRRMGVEMTLLRALAFHPRM 363 + +E R A + Sbjct: 354 TEELALEALAYRLEALLSQR 373 >UniRef50_C7JGT4 DNA polymerase III delta prime subunit DnaC n=8 Tax=Acetobacter pasteurianus RepID=C7JGT4_ACEP3 Length = 314 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 23/325 (7%) Query: 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 + G + L A + GR+ HA+L +G G+GK + A LA+ L + Sbjct: 10 QLRGHQAALQAFRQAMQGGRLPHAWLITGPPGIGKATFAFRLARILLGGEDELSPAGRRV 69 Query: 77 DNCR---EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 + R D S +D R + ++ A G ++V ++D ++R Sbjct: 70 SAATHADLLVVARGFDEKRQKYRSEIVADDVRPINSFLRRTAAEGGWRVVIVDGAEYMNR 129 Query: 134 HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 + NA+LK LEEPP LL + P +L TI SRC + L +LD + L + Sbjct: 130 SAANAVLKILEEPPPATVLLLTCSAPGRLLPTIRSRCRKLELASLDAADMSAVLRAQAPD 189 Query: 194 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLV 253 +Q + A G+ AL+L A G++ V ++ + ++ + Sbjct: 190 ----ASDTEIQRVMAEAHGAPGRALALL----ADKGGEI-ASLVHEVVQGITPLRSYEVA 240 Query: 254 EAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM 313 E ++ + + + L + + A + +R Sbjct: 241 ETILRRDYGFSLF-----------FSLLSDTLQIQARQAARQGNPQCVALANAWEATMRK 289 Query: 314 RELARTIPPTDIQLYYQTLLIGRKE 338 + + + I +E Sbjct: 290 HAETERFNLDKQEALLEAMTIASRE 314 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.107 0.241 Lambda K H 0.267 0.0326 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,131,547,542 Number of Sequences: 3077464 Number of extensions: 89344537 Number of successful extensions: 483517 Number of sequences better than 1.0e-01: 1000 Number of HSP's better than 0.1 without gapping: 8392 Number of HSP's successfully gapped in prelim test: 10260 Number of HSP's that attempted gapping in prelim test: 447910 Number of HSP's gapped (non-prelim): 32569 length of query: 643 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 508 effective length of database: 624,938,716 effective search space: 317468867728 effective search space used: 317468867728 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 95 (41.5 bits)