27 c1in8A_ Probab=99.97   E-value=1.4e-27  Score=198.34  Aligned_columns=251  Identities=23%

Q ss_pred             CCCCHHHHCCCHHHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             688787841938999999999983----8987268631798888899999999996588888878777748898885378
Q batch____        11 RPQTFADVVGQEHVLTALANGLSL----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR   86 (643)
Q Consensus        11 rp~~~~~~~g~~~~~~~l~~~~~~----~~~~~~~l~~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~   86 (643)
                      ||++|+|+|||+++++.|++++..    ++.++.+||+||+|||||++|+++|+.+++.                     
T Consensus         4 rp~~~~d~iG~e~~~~~L~~~i~~~~~~~~~~~~ill~GppGtGKT~la~~ia~~l~~~---------------------   62 (298)
T c1in8A_           4 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN---------------------   62 (298)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC---------------------
T ss_pred             CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---------------------
T ss_conf             89997781270999999999999986338888857998698898889999999970997---------------------


Q ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHHCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEEEECCCHHHCC
Q ss_conf             87189965534489999999999985331108966999848464888999999999751678---659999739867801
Q batch____        87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE---HVKFLLATTDPQKLP  163 (643)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~iide~~~l~~~~~~~llk~le~~~~---~~~~i~~~~~~~~~~  163 (643)
                         +++++.........+.....      ......|++|||+|.++...++.|+++|++...   ..+++..++....+.
T Consensus        63 ---~~~i~~~~~~~~~~~~~~~~------~~~~~~il~~dei~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  133 (298)
T c1in8A_          63 ---IHVTSGPVLVKQGDMAAILT------SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIQPFTLVGATVRSGLLS  133 (298)
T ss_dssp             ---EEEEETTTCCSHHHHHHHHH------TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSCCCCCCCEEEEEESCGGGSC
T ss_pred             ---EEEEECCCCCCCHHHHHHHH------HHCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHCC
T ss_conf             ---99994155332012456688------513799899942367698999999999705533444066526545856314


Q ss_pred             HHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH----CCCCCCHHHHH
Q ss_conf             3588667-631588899889999999999970898698999999997298713589799999851----24760089998
Q batch____       164 VTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS----GDGQVSTQAVS  238 (643)
Q Consensus       164 ~~i~src-~~~~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~~~~~~~~~g~~r~~~~~~~~~~~~----~~~~~~~~~~~  238 (643)
                      .+..+++ ..+.+..++..++..++..++..+++.++.+++..|++.+.|++|++.++|+.+..+    +.+.++.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~R~~~~ll~~~~~~~~~~~~~~i~~~~i~  213 (298)
T c1in8A_         134 SPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVL  213 (298)
T ss_dssp             HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             64332344311367898999999999999982985588999999998399989999999999999985298876989999


Q ss_pred             HHCCCC------CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             640567------98899999999981598999999999997089999999999999999
Q batch____       239 AMLGTL------DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR  291 (643)
Q Consensus       239 ~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~r~  291 (643)
                      ..++..      .......++..+.............-....|.+...+...+-.++..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~l~~~~~~~~~~~~~~~~~  272 (298)
T c1in8A_         214 KTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQ  272 (298)
T ss_dssp             HHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHTTHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99975125510111468999999999817695479999998599989999997657988