102 c3csgA_ Probab=98.42   E-value=8.5e-05  Score=44.23  Aligned_columns=233  Identities=12%

Q ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHHCCCC-CEEEECCHHHHHHHHCCC----------
Q ss_conf             4999996398269999999877421598058984399-7899999615982-589745978999973027----------
Q batch____        33 HIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSG-SLLPNDATNHGEL-DANVFQHRPFLEQDNQAH----------  100 (272)
Q Consensus        33 ~l~ig~~~~~~~~~~~~~~~~~~k~~G~~v~~~~~~~-~~~~~~~l~~g~~-D~~~~~~~~~~~~~~~~~----------  100 (272)
                      +|+|=..+......+..+.+.|+|++|++|++....+ ...+..++.+|+. |++.............+.          
T Consensus         1 ~l~vW~~~~~~~~~~~e~~~~Fek~tGIkV~~~~~~d~~~kl~~~~asG~~PDI~~~~~~~~~~~~~~G~L~~L~~~~~~   80 (458)
T c3csgA_           1 KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAF   80 (458)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEHHHHHHHHHTTCBCCCCCCHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCEECCCCHHHH
T ss_conf             58999708535789999999872037968999862107999999983899971999872127889978982137810435


Q ss_pred             -------------------CCCEEEEEECCEEEEEEECCCCCCHHHH-------CCCCEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             -------------------9617998301100013304665666660-------57977862377602589999999769
Q batch____       101 -------------------GYKLVAVGNTFVFPMAGYSKKIKTVAQI-------KEGATVAIPNDPTNLGRALLLLQKEK  154 (272)
Q Consensus       101 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~dl-------~~gk~~~~~~~~~~~~~~~~~l~~~g  154 (272)
                                         ++............--+......+|+|+       +..-......+.........++...|
T Consensus        81 ~d~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdlf~e~P~Twdel~~~a~klk~~g~~~~~~~~~~~~~~~~~~~~~g  160 (458)
T c3csgA_          81 QDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADG  160 (458)
T ss_dssp             HTTBCHHHHHTTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHEEECCEEEEEECCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             65302565630778897999752771479998066612123688899999999885798306733642057999999856


Q ss_pred             CCC--------------CCCCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCEEEE
Q ss_conf             811--------------556444321012221034551899768889999962688339996557898740154642786
Q batch____       155 LIT--------------LKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVF  220 (272)
Q Consensus       155 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~vd~~~~~~~~~~~~~~~~~~~~~~  220 (272)
                      ...              ...............-..........+..+....+.+|++...+.+.-.............+.
T Consensus       161 g~~~~~~~~~~~~~~~~l~sp~~~~al~~~~~l~~~g~~~~~~~~~~~~~~F~~G~~am~~~g~w~~~~~~~~~~~~~v~  240 (458)
T c3csgA_         161 GYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVT  240 (458)
T ss_dssp             CEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEE
T ss_pred             CHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCCEE
T ss_conf             42001268523456634389999999999999997089898889778989986497459984503355674179861368


Q ss_pred             C-------CCCCCCEEEEEEEECCCCCCHHHHHHHH-HHCCHHHHHHHHHHCC
Q ss_conf             1-------5888867899999444478179999999-9789899999986149
Q batch____       221 I-------EDKNSPYVNILVAREDNKNAENVKEFLQ-SYQSPEVAKAAETIFN  265 (272)
Q Consensus       221 ~-------~~~~~~~~~~~~~~~~~~~~~~~k~fi~-~l~s~e~~~~i~~~~~  265 (272)
                      .       ..........+++.+.++|++++.+|++ ++.++|.++.+.+...
T Consensus       241 ~~P~~~g~~~~~~~g~~~~~I~~~SknkeaA~~Fl~~~~~s~e~~~~~~~~~~  293 (458)
T c3csgA_         241 VLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKP  293 (458)
T ss_dssp             CCCEETTEECCCEEEEEEEEEBTTCTTHHHHHHHHHHTTSSHHHHHHHHHHSC
T ss_pred             ECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             71356888774167878899828987989999999988399899999973189