Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	T	T	H	H	L	R	T	G	A	A	L	L	L	A	G	I	L	L	A	G	C	D	Q	S	S	S	D	A	K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?																		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I
Secondary structure
SS confidence
Disorder																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Sequence		A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G	W
Secondary structure
SS confidence
Disorder																															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3tqw chain A Region: 34 - 272 Aligned: 235 Modelled: 238 Confidence: 100.0% Identity: 46% PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii Phyre2 PDB 3k2d chain A Region: 28 - 265 Aligned: 236 Modelled: 238 Confidence: 100.0% Identity: 54% PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Phyre2 PDB 3gxa chain A Region: 32 - 271 Aligned: 236 Modelled: 240 Confidence: 100.0% Identity: 32% PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Phyre2 PDB 1xs5 chain A Region: 30 - 271 Aligned: 239 Modelled: 242 Confidence: 100.0% Identity: 34% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 3ir1 chain F Region: 32 - 271 Aligned: 236 Modelled: 240 Confidence: 100.0% Identity: 32% PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Phyre2 PDB 1p99 chain A Region: 33 - 271 Aligned: 235 Modelled: 239 Confidence: 100.0% Identity: 38% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 1p99 chain A Region: 33 - 271 Aligned: 235 Modelled: 239 Confidence: 100.0% Identity: 38% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus Phyre2 PDB 3e4r chain A Region: 28 - 265 Aligned: 218 Modelled: 220 Confidence: 99.9% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes Phyre2 PDB 3un6 chain A Region: 31 - 265 Aligned: 217 Modelled: 217 Confidence: 99.9% Identity: 18% PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound Phyre2 PDB 2x26 chain A Region: 30 - 263 Aligned: 212 Modelled: 216 Confidence: 99.9% Identity: 20% PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Phyre2 PDB 2x7p chain A Region: 32 - 265 Aligned: 216 Modelled: 216 Confidence: 99.9% Identity: 10% PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold Phyre2 PDB 3uif chain A Region: 29 - 263 Aligned: 214 Modelled: 217 Confidence: 99.9% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Phyre2 PDB 2g29 chain A Region: 27 - 261 Aligned: 216 Modelled: 216 Confidence: 99.9% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Phyre2 PDB 3qsl chain A Region: 33 - 263 Aligned: 212 Modelled: 214 Confidence: 99.9% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 Phyre2 PDB 2de4 chain B Region: 34 - 264 Aligned: 208 Modelled: 213 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid Phyre2 PDB 3ix1 chain A Region: 28 - 271 Aligned: 224 Modelled: 226 Confidence: 99.9% Identity: 16% PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Phyre2 PDB 3ix1 chain B Region: 28 - 271 Aligned: 224 Modelled: 226 Confidence: 99.8% Identity: 16% PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Phyre2 PDB 2i4c chain A Region: 30 - 262 Aligned: 214 Modelled: 216 Confidence: 99.8% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Phyre2 PDB 3hn0 chain A Region: 31 - 272 Aligned: 216 Modelled: 223 Confidence: 99.8% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Phyre2 PDB 3tmg chain A Region: 32 - 272 Aligned: 219 Modelled: 223 Confidence: 99.8% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Phyre2 1 c3tqwA_ 2 c3k2dA_ 3 c3gxaA_ 4 d1xs5a_ 5 c3ir1F_ 6 d1p99a_ 7 c1p99A_ 8 c3e4rA_ 9 c3un6A_ 10 c2x26A_ 11 c2x7pA_ 12 c3uifA_ 13 c2g29A_ 14 c3qslA_ 15 c2de4B_ 16 c3ix1A_ 17 c3ix1B_ 18 c2i4cA_ 19 c3hn0A_ 20 c3tmgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tqwA_ 100.0 46 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 2 c3k2dA_ 100.0 54 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 3 c3gxaA_ 100.0 32 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 4 d1xs5a_ 100.0 34 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 5 c3ir1F_ 100.0 32 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 6 d1p99a_ 100.0 38 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 7 c1p99A_ 100.0 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 8 c3e4rA_ 99.9 17 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 9 c3un6A_ 99.9 18 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 10 c2x26A_ 99.9 20 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 11 c2x7pA_ 99.9 10 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 12 c3uifA_ 99.9 19 PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt 13 c2g29A_ 99.9 14 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 14 c3qslA_ 99.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 15 c2de4B_ 99.9 15 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 16 c3ix1A_ 99.9 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 17 c3ix1B_ 99.8 16 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 18 c2i4cA_ 99.8 14 PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium 19 c3hn0A_ 99.8 15 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution 20 c3tmgA_ 99.8 18 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 21 d1atga_ not modelled 99.7 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 22 c3l6gA_ not modelled 99.7 10 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 23 c3n5lA_ not modelled 99.7 17 PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution 24 c2h5yC_ not modelled 99.6 12 PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate 25 d1amfa_ not modelled 99.6 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 26 c3fj7A_ not modelled 99.6 11 PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 27 d2nxoa1 not modelled 99.5 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 28 d1zbma1 not modelled 99.5 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 29 c3lr1A_ not modelled 99.5 10 PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens 30 c3muqB_ not modelled 99.5 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 31 d2czla1 not modelled 99.4 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 32 c3kn3C_ not modelled 99.4 9 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 33 c3c9hB_ not modelled 99.4 13 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 34 d1sbpa_ not modelled 99.4 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 35 c3rpwA_ not modelled 99.4 13 PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 36 c2qryD_ not modelled 99.4 14 PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein 37 d1xvxa_ not modelled 99.3 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 38 c2rejA_ not modelled 99.3 10 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 39 d1xc1a_ not modelled 99.3 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 40 d1us5a_ not modelled 99.3 23 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 41 c3pu5A_ not modelled 99.2 11 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis 42 d1y9ua_ not modelled 99.2 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 43 c1twyG_ not modelled 99.2 13 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae 44 d1twya_ not modelled 99.2 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 45 d1r9la_ not modelled 99.2 21 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 46 d1nnfa_ not modelled 99.2 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 47 d1q35a_ not modelled 99.1 10 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 48 d1xvya_ not modelled 99.1 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 49 d1y4ta_ not modelled 99.1 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 50 c3osrA_ not modelled 99.1 12 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 51 c2pt1A_ not modelled 99.1 12 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803 52 c3r6uA_ not modelled 99.0 14 PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis 53 d1pota_ not modelled 99.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 54 c2v84A_ not modelled 99.0 11 PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum 55 c3cfxA_ not modelled 99.0 14 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate 56 c3k6wA_ not modelled 98.9 15 PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans 57 c3cg3A_ not modelled 98.9 17 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate 58 c3r39A_ not modelled 98.9 8 PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica 59 d2onsa1 not modelled 98.9 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 60 c2q2aD_ not modelled 98.8 12 PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus 61 c3o3uN_ not modelled 98.8 12 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 62 c3f5fA_ not modelled 98.8 12 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 63 c3py7A_ not modelled 98.8 12 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 64 c3ob4A_ not modelled 98.8 12 PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 65 c2o1mB_ not modelled 98.8 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 66 d1a99a_ not modelled 98.8 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 67 c3pppA_ not modelled 98.8 13 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 68 c3cg1A_ not modelled 98.8 18 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate 69 c3mp6A_ not modelled 98.7 12 PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 70 c3kzgB_ not modelled 98.7 10 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 71 c3dm0A_ not modelled 98.7 12 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 72 c3k4uA_ not modelled 98.7 10 PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine 73 d2a5sa1 not modelled 98.7 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 74 c3mplA_ not modelled 98.7 13 PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) 75 d1sw5a_ not modelled 98.7 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 76 c3h4zC_ not modelled 98.7 13 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 77 c3oaiB_ not modelled 98.7 12 PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero 78 c1mh3A_ not modelled 98.7 12 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 79 c3g41A_ not modelled 98.6 11 PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae 80 c3c4mA_ not modelled 98.6 12 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 81 c3delC_ not modelled 98.6 8 PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis 82 c2vpnB_ not modelled 98.6 12 PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata 83 c2nvuB_ not modelled 98.6 12 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 84 d1hsla_ not modelled 98.6 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 85 c3gyyC_ not modelled 98.5 12 PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state 86 c2ieeB_ not modelled 98.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. 87 d1elja_ not modelled 98.5 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 88 c3cfzA_ not modelled 98.5 12 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate 89 c3d4cA_ not modelled 98.5 12 PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) 90 c3o66A_ not modelled 98.5 11 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter 91 c1r6zA_ not modelled 98.5 12 PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) 92 c2vgqA_ not modelled 98.5 13 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 93 d1lsta_ not modelled 98.5 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 94 c2q89A_ not modelled 98.5 17 PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein; PDBTitle: crystal structure of ehub in complex with hydroxyectoine 95 d1pb7a_ not modelled 98.5 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 96 c2xd3A_ not modelled 98.5 18 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. 97 c2ylnA_ not modelled 98.4 13 PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation 98 c2y7iB_ not modelled 98.4 11 PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. 99 c2vozA_ not modelled 98.4 12 PDB header:metal-binding protein Chain: A: PDB Molecule:periplasmic iron-binding protein; PDBTitle: apo futa2 from synechocystis pcc6803 100 c3ehuA_ not modelled 98.4 12 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf 101 c2pyyB_ not modelled 98.4 11 PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate 102 c3csgA_ not modelled 98.4 12 PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex 103 c1svxB_ not modelled 98.4 14 PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein 104 d1ii5a_ not modelled 98.4 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 105 c2pfzA_ not modelled 98.4 17 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 106 c3h7mA_ not modelled 98.4 13 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of a histidine kinase sensor domain with2 similarity to periplasmic binding proteins 107 d1ursa_ not modelled 98.4 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 108 c1ursA_ not modelled 98.4 11 PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius 109 c1hsjA_ not modelled 98.3 12 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 110 c2zykA_ not modelled 98.3 14 PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin 111 c3hv1A_ not modelled 98.3 14 PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus 112 d1laxa_ not modelled 98.3 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 113 c3fxbB_ not modelled 98.3 13 PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha 114 c3kbrA_ not modelled 98.3 14 PDB header:lyase Chain: A: PDB Molecule:cyclohexadienyl dehydratase; PDBTitle: the crystal structure of cyclohexadienyl dehydratase precursor from2 pseudomonas aeruginosa pa01 115 c1y4cA_ not modelled 98.3 12 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 116 c2xx7B_ not modelled 98.3 9 PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of 1-(4-(1-pyrrolidinylcarbonyl)phenyl)-3-2 (trifluoromethyl)-4,5,6,7-tetrahydro-1h-indazole in complex with3 the ligand binding domain of the rat glua2 receptor and glutamate4 at 2.2a resolution. 117 d1mqia_ not modelled 98.3 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 118 c2gh9A_ not modelled 98.2 14 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose 119 c2hpgB_ not modelled 98.2 17 PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein 120 c3qufB_ not modelled 98.2 13 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0