BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (219 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 456 e-127 UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria Re... 290 3e-77 UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A... 284 1e-75 UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K9... 257 2e-67 UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2... 256 3e-67 UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A... 252 8e-66 UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 233 5e-60 UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria R... 225 1e-57 UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 223 2e-57 UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID... 221 1e-56 UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma prot... 210 2e-53 UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria R... 208 1e-52 UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 206 6e-52 UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A... 206 6e-52 UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 200 3e-50 UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID... 191 2e-47 UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe ... 191 2e-47 UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 187 2e-46 UniRef50_B7I1Q3 Dual specificity pseudouridine synthase n=17 Tax... 179 8e-44 UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae Re... 176 3e-43 UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 176 7e-43 UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter Re... 176 7e-43 UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales ... 174 1e-42 UniRef50_D0KW62 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 174 1e-42 UniRef50_Q12RE8 Pseudouridine synthase n=83 Tax=Bacteria RepID=Q... 169 7e-41 UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp.... 165 1e-39 UniRef50_C8Q1E7 Pseudouridine synthase n=1 Tax=Enhydrobacter aer... 164 2e-39 UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales R... 161 1e-38 UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria Rep... 161 2e-38 UniRef50_B7VRG6 Pseudouridine synthase n=4 Tax=Vibrionales RepID... 159 5e-38 UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 159 7e-38 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 158 1e-37 UniRef50_Q6AIJ2 Probable ribosomal large subunit pseudouridine s... 156 5e-37 UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A... 154 2e-36 UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 154 2e-36 UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergen... 154 2e-36 UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=... 154 2e-36 UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 154 3e-36 UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 153 4e-36 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 152 8e-36 UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 152 9e-36 UniRef50_A5WHV7 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 152 9e-36 UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri ... 151 1e-35 UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 148 1e-34 UniRef50_A5ZGG0 Pseudouridine synthase n=4 Tax=Bacteroides RepID... 148 1e-34 UniRef50_C5VJ38 Pseudouridine synthase n=2 Tax=Prevotella RepID=... 148 1e-34 UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timone... 145 7e-34 UniRef50_B2J8D4 Pseudouridine synthase n=7 Tax=Cyanobacteria Rep... 145 1e-33 UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A... 145 1e-33 UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio sal... 144 2e-33 UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aerug... 143 4e-33 UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elo... 142 6e-33 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 140 3e-32 UniRef50_A6FXR5 Pseudouridine synthase n=1 Tax=Plesiocystis paci... 134 2e-30 UniRef50_D1QMM7 Pseudouridine synthase n=1 Tax=Prevotella oris F... 134 2e-30 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 132 1e-29 UniRef50_C2HWY8 Pseudouridine synthase n=2 Tax=Vibrio cholerae R... 131 2e-29 UniRef50_D1XZI5 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 127 3e-28 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 127 3e-28 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 126 5e-28 UniRef50_B8CCD9 Predicted protein (Fragment) n=2 Tax=Thalassiosi... 126 6e-28 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 125 7e-28 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 125 9e-28 UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine syn... 125 1e-27 UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae... 125 1e-27 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 124 2e-27 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 124 2e-27 UniRef50_B4UM41 Pseudouridine synthase, RluA family n=4 Tax=Anae... 123 4e-27 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 122 1e-26 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 122 1e-26 UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas sub... 122 1e-26 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 121 2e-26 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 121 2e-26 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 121 2e-26 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 121 2e-26 UniRef50_Q1DCE5 Pseudouridine synthase, RluA family n=2 Tax=Cyst... 120 3e-26 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 120 3e-26 UniRef50_Q0IBH1 Pseudouridine synthase n=11 Tax=Cyanobacteria Re... 120 4e-26 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 120 5e-26 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 119 6e-26 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 119 7e-26 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 119 9e-26 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 119 9e-26 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 119 1e-25 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 119 1e-25 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 118 1e-25 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 118 1e-25 UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 118 2e-25 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 118 2e-25 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 117 2e-25 UniRef50_B7G8W7 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 117 2e-25 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 117 2e-25 UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacte... 117 3e-25 UniRef50_B5Y592 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 117 3e-25 UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae ... 117 3e-25 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 117 3e-25 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 117 3e-25 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 116 5e-25 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 116 5e-25 UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D... 116 5e-25 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 116 6e-25 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 115 7e-25 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 115 8e-25 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 115 8e-25 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 115 8e-25 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 115 9e-25 UniRef50_B8BQ07 Predicted protein n=1 Tax=Thalassiosira pseudona... 115 9e-25 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 115 1e-24 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 115 1e-24 UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepI... 115 1e-24 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 115 1e-24 UniRef50_B0T2G2 Pseudouridine synthase n=6 Tax=Caulobacteraceae ... 115 1e-24 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 114 2e-24 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 114 2e-24 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 114 2e-24 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 114 2e-24 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 114 3e-24 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 114 3e-24 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 114 3e-24 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 114 3e-24 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 114 3e-24 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 114 3e-24 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 113 4e-24 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 113 4e-24 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 113 4e-24 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 113 4e-24 UniRef50_A6FJ39 Pseudouridine synthase n=1 Tax=Moritella sp. PE3... 113 5e-24 UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 113 6e-24 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 112 6e-24 UniRef50_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum ce... 112 6e-24 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 112 7e-24 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 112 9e-24 UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 112 9e-24 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 112 1e-23 UniRef50_B9MS57 Pseudouridine synthase n=1 Tax=Anaerocellum ther... 112 1e-23 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 112 1e-23 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 111 1e-23 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 111 2e-23 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 110 3e-23 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 110 3e-23 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 110 3e-23 UniRef50_Q1RJX7 Ribosomal large subunit pseudouridine synthase C... 110 4e-23 UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales ... 110 4e-23 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 110 4e-23 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 110 4e-23 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 110 5e-23 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 110 5e-23 UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sak... 109 5e-23 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 109 5e-23 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 109 6e-23 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 109 7e-23 UniRef50_D2QJH0 Pseudouridine synthase, RluA family n=3 Tax=Bact... 109 7e-23 UniRef50_C7PP03 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 109 7e-23 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 109 8e-23 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 109 8e-23 UniRef50_B7FU02 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 109 8e-23 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 108 9e-23 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 108 9e-23 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 108 1e-22 UniRef50_D2R4N0 Pseudouridine synthase, RluA family n=1 Tax=Pire... 108 1e-22 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 108 1e-22 UniRef50_Q0BYW5 Pseudouridine synthase family protein n=1 Tax=Hy... 108 1e-22 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 108 1e-22 UniRef50_C1TRW2 Pseudouridine synthase n=1 Tax=Dethiosulfovibrio... 108 1e-22 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 108 1e-22 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 108 2e-22 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 107 2e-22 UniRef50_D0LUH1 Pseudouridine synthase n=1 Tax=Haliangium ochrac... 107 2e-22 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 107 2e-22 UniRef50_Q38Y05 Pseudouridine synthase, 23S-rRNA-specific n=1 Ta... 107 2e-22 UniRef50_A0LBW6 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 107 2e-22 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 107 2e-22 UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacte... 107 2e-22 UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aur... 107 3e-22 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 107 3e-22 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 107 3e-22 UniRef50_B5JHH9 Pseudouridine synthase n=1 Tax=Verrucomicrobiae ... 107 3e-22 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 107 3e-22 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 107 3e-22 UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular... 107 3e-22 UniRef50_C7LR44 Pseudouridine synthase n=6 Tax=Bacteria RepID=C7... 107 3e-22 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 107 4e-22 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 107 4e-22 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 107 4e-22 UniRef50_D1RB93 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 107 4e-22 UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae Rep... 107 4e-22 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 107 4e-22 UniRef50_Q5Z213 Pseudouridine synthase n=2 Tax=Actinomycetales R... 106 5e-22 UniRef50_C6VIZ5 Pseudouridine synthase n=3 Tax=Lactobacillus pla... 106 5e-22 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 106 5e-22 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 106 6e-22 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 106 6e-22 UniRef50_B1ZRU1 Pseudouridine synthase n=2 Tax=Opitutaceae RepID... 106 7e-22 UniRef50_C8PQT2 Ribosomal large subunit pseudouridine synthase D... 106 7e-22 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 105 7e-22 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 105 8e-22 UniRef50_A4XKV9 Pseudouridine synthase n=1 Tax=Caldicellulosirup... 105 8e-22 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 105 8e-22 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 105 9e-22 UniRef50_A6G930 Pseudouridine synthase n=1 Tax=Plesiocystis paci... 105 9e-22 UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 105 9e-22 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 105 9e-22 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 105 9e-22 UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C... 105 9e-22 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 105 1e-21 UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID... 105 1e-21 UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 105 1e-21 UniRef50_B7P2L1 Ribosomal pseudouridine synthase, putative n=1 T... 105 1e-21 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 105 1e-21 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 105 1e-21 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 105 1e-21 UniRef50_D2R760 Pseudouridine synthase, RluA family n=2 Tax=Plan... 105 1e-21 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 105 1e-21 UniRef50_C1E6N6 Pseudouridine synthase n=2 Tax=Micromonas RepID=... 105 1e-21 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 105 1e-21 UniRef50_C8W9Q3 Pseudouridine synthase n=2 Tax=Atopobium RepID=C... 105 1e-21 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 105 1e-21 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 105 1e-21 UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 105 2e-21 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 104 2e-21 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 104 2e-21 UniRef50_C6VN18 Pseudouridine synthase n=3 Tax=Lactobacillus pla... 104 2e-21 UniRef50_P0A5T2 Uncharacterized RNA pseudouridine synthase Rv154... 104 2e-21 UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae... 104 2e-21 UniRef50_A3I3R5 Ribosomal large subunit pseudouridine synthase n... 104 2e-21 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 104 2e-21 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 104 2e-21 UniRef50_C8P137 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 104 2e-21 UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochrac... 104 2e-21 UniRef50_B9XHZ1 Pseudouridine synthase, RluA family n=2 Tax=Verr... 104 3e-21 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 104 3e-21 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 104 3e-21 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 103 3e-21 UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 103 3e-21 UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae R... 103 3e-21 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 103 3e-21 UniRef50_Q1WS68 Pseudouridine synthase n=2 Tax=Lactobacillus sal... 103 3e-21 UniRef50_A4CVN5 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 103 3e-21 UniRef50_UPI000178A5E6 pseudouridine synthase, RluA family n=1 T... 103 3e-21 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 103 4e-21 UniRef50_Q1VZ16 Pseudouridine synthase n=1 Tax=Psychroflexus tor... 103 4e-21 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 103 4e-21 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 103 4e-21 UniRef50_C7LZI3 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 103 5e-21 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 103 5e-21 UniRef50_C7TK72 Ribosomal large subunit 23S pseudouridine syntha... 103 5e-21 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 103 5e-21 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 103 5e-21 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 102 6e-21 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 102 6e-21 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV Sbjct: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP Sbjct: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 >UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria RepID=A3MZ33_ACTP2 Length = 237 Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 136/222 (61%), Positives = 170/222 (76%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP EP+L +Y+D+HI+V+NKPSGLLSVPG E+ DS MTR+Q+ Y E Sbjct: 16 MALIEYHPPLEPFLTEVYRDNHILVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEPA 75 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA---EGLVDLPLIC 117 HRLDMATSG+++ AL+KAAE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 76 HRLDMATSGILLFALSKAAEKELKRQFRDREPKKHYIALLWGKLGEKVGDTGEMNFPLIC 135 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+ + +NT RV L PITGRSHQLRVH LALGHPILG Sbjct: 136 DWENRPRQKICYERGKKAITHYEVLAHLPNNTTRVKLTPITGRSHQLRVHSLALGHPILG 195 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYASP A++++PRL LHAE L+ITHP G +MTF A +F Sbjct: 196 DKFYASPLAKSLSPRLCLHAESLSITHPITGEAMTFTAQTEF 237 >UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A n=20 Tax=Proteobacteria RepID=RLUA_HAEDU Length = 222 Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP P+L +Y+D+HI+V+NKPSGLLSVPG E+ DSVMTR+Q+ Y AE Sbjct: 1 MALIEYHPPLNPFLEEVYRDNHIVVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEPA 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP---AEGLVDLPLIC 117 HRLDMATSG+I++AL+K AE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 61 HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+E+ A+NT RV PITGRSHQLRVH LALGHPI+G Sbjct: 121 DWENRPRQKICYERGKKATTHYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPIIG 180 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYA+P A+++APRL LHAE LTI HP MTF F Sbjct: 181 DKFYANPLAKSLAPRLCLHAESLTIAHPISAELMTFNTEPTF 222 >UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K915_VIBPA Length = 254 Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/219 (57%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M YNPP+EPW+ I+++D+HI+V NKPSGLLSVPGRLEEH DS+ +R+ YP + V Sbjct: 10 MAMTEYNPPREPWVDIVFEDEHILVANKPSGLLSVPGRLEEHYDSLWSRLVAIYPDIQVV 69 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM TSG++++A K AER LK+QF+ R K Y ARVWGHP+ G +DLPLICDWP Sbjct: 70 HRLDMDTSGLMLLAKHKEAERSLKKQFQYRLTHKVYYARVWGHPTNDNGEIDLPLICDWP 129 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRP+Q VC++ GKP++T Y+VV+ + T+ V L PITGRSHQLRVHM ALGHPI+GD F Sbjct: 130 NRPRQIVCFDDGKPSKTLYQVVK-REERTSIVRLLPITGRSHQLRVHMQALGHPIVGDEF 188 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y+ EA + RL LHA L+ HP P DF Sbjct: 189 YSEGEAFEFSDRLELHAAELSFYHPHSEALQCAFVPCDF 227 >UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2Y9_VIBSE Length = 250 Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 161/223 (72%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW+ I+++DD I+ VNKPSGLLSVPGRL EH DS+ +R++ +P+ + V Sbjct: 1 MAMLEYTPPTDPWVDIVFEDDDILAVNKPSGLLSVPGRLAEHYDSMWSRLKEVHPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++++A K +ER LK+QF+ R K Y ARVWGH P EG +DLPLICDWP Sbjct: 61 HRLDMSTSGLMLLAKNKPSERALKKQFQYRLTHKVYYARVWGHVEPQEGNIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVV--EYAADNTARVVLK--PITGRSHQLRVHMLALGHPIL 176 NRP+QKVC++ GKP+QT ++VV E +D T V++ PITGRSHQLRVH++A+GH I+ Sbjct: 121 NRPRQKVCFDDGKPSQTLFQVVKREVHSDGTHTTVVRLLPITGRSHQLRVHLMAIGHAIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA+ EA + RL LHA L+ HPA + P DF Sbjct: 181 GDEFYATEEAYQFSERLELHAAELSFYHPATDQLSSIFVPCDF 223 >UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A n=82 Tax=Proteobacteria RepID=RLUA_VIBVU Length = 250 Score = 252 bits (643), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 153/223 (68%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW I+++DDHI+ VNKPSGLLSVPGRL EH DS+ +R+Q YP+ + V Sbjct: 1 MAMLEYLPPTDPWTEIIFEDDHILAVNKPSGLLSVPGRLPEHHDSMWSRLQEQYPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++V A K AE LK+QF+ R K Y ARVWGH G++DLPLICDWP Sbjct: 61 HRLDMSTSGLMVFAKNKRAEAALKKQFQYRLTHKVYYARVWGHVEADSGMIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVV--EYAADNTARVVLK--PITGRSHQLRVHMLALGHPIL 176 NRP QKVC+E GKP+QT ++V E A+ +++ P+TGRSHQLRVHM ALGHPI+ Sbjct: 121 NRPMQKVCHEHGKPSQTAFQVAKREVHANGAQTTIMRLLPVTGRSHQLRVHMQALGHPIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA +A + RL LHA L+ HP + P DF Sbjct: 181 GDEFYAQGDAFTFSERLELHAAELSFYHPKSHWLRSLFVPCDF 223 >UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=C7LVL1_DESBD Length = 234 Score = 233 bits (593), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 120/214 (56%), Positives = 154/214 (71%), Gaps = 4/214 (1%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 Y+PP EP L ++++D ++VVNKPSGLLSVPGR E DSV++R++ + A++VHRLD+ Sbjct: 8 YDPPTEPRLAVIHEDRDMVVVNKPSGLLSVPGRTPELFDSVLSRVREIHRGAQAVHRLDL 67 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+VVA + AE L++QF++R +K Y+ARV G S G VDLPLICDWPNRP Q Sbjct: 68 GTSGVLVVATRRKAETILRQQFQDRLTRKLYLARVQGVMSEDSGQVDLPLICDWPNRPMQ 127 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 VC++TGKPA T+Y+V+E ++T V+L+P TGRSHQLRVHM +LGHPILGD Y E Sbjct: 128 MVCHDTGKPALTDYQVLESDGESTL-VLLRPHTGRSHQLRVHMASLGHPILGDNLYG--E 184 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 R RLLLHA L + HP G TF AP DF Sbjct: 185 QRP-GERLLLHASQLGLYHPYSGEWTTFHAPCDF 217 >UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=Q28K21_JANSC Length = 217 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/214 (55%), Positives = 149/214 (69%), Gaps = 3/214 (1%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 Y PP +P L I+++D +++VNKP+GLLSVPG+ E D ++ R++ +P+ VHRLDM Sbjct: 7 YAPPTDP-LDIIHEDHDLLLVNKPAGLLSVPGKGEHLSDCLIARLKIAFPEVLLVHRLDM 65 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+V A T A+R L QF +R KK YVARVWG + +G +DLPLI DWPNRP Q Sbjct: 66 DTSGVMVFARTPHAQRHLGLQFEKRHTKKAYVARVWGEVTDKDGHIDLPLIVDWPNRPLQ 125 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V +ETGKPAQT++ + D T R+ L P TGRSHQLRVHMLA+GHPILGD FYA+ Sbjct: 126 HVNHETGKPAQTDWRRIR-VEDGTTRMRLFPKTGRSHQLRVHMLAIGHPILGDPFYATGP 184 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A A PRL+LHAE L + HP G MTF+A F Sbjct: 185 ALAF-PRLMLHAESLKLRHPDGGIGMTFRARVPF 217 >UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q2CAH0_9RHOB Length = 215 Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 148/216 (68%), Gaps = 3/216 (1%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63 +Y+PP P L +L++D +++V+KP+GLLSVPG+ E D ++ R+Q +P A VHRL Sbjct: 3 SDYDPPDVP-LAVLHEDHEVVLVDKPAGLLSVPGKGEHLADCLLARVQAAFPTALLVHRL 61 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV++ ALT A+R L QF +R+ +K YVARV G + G VDLPLI DWPNRP Sbjct: 62 DRDTSGVMIFALTPHAQRHLGLQFEKRQTRKTYVARVAGRIADKTGTVDLPLIVDWPNRP 121 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 KQ V +E GKPA T++ VV A+D RV L P TGRSHQLRVHMLALGHPILGD FYA Sbjct: 122 KQMVDHENGKPAVTDWRVVR-ASDAETRVRLFPKTGRSHQLRVHMLALGHPILGDPFYAE 180 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ARA PR++LH+E L HP G M APA F Sbjct: 181 GPARAH-PRMMLHSETLQFRHPDGGRGMRITAPAPF 215 >UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID=A9CFZ5_AGRT5 Length = 222 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/214 (50%), Positives = 148/214 (69%), Gaps = 1/214 (0%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 YNPP +PWL I+++DD ++V++KPSGLLSVPGR DS+MTR+Q+ +P+A ++RLD Sbjct: 10 YNPPLDPWLTIVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQKQFPKALMINRLDK 69 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++++L + A + QF +RE +K YVA VWG + EG VDLPL D N+P+ Sbjct: 70 DTSGIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRH 129 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +V +E GKPAQ+ + V+E R+ L P+TGR+HQLRVHM ALGHPILGD FYA E Sbjct: 130 RVDHENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEGE 189 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A APRL+LHA+ + HP G +T+ P F Sbjct: 190 ALTAAPRLMLHAQEVGFRHPD-GRDVTYTVPCPF 222 >UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGE0_9GAMM Length = 221 Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/196 (53%), Positives = 134/196 (68%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 IL+ DD +++VNKP+GLLSVPGR +KD ++TR+QR Y A VHRLDM TSG++V+AL Sbjct: 17 ILFTDDDLLLVNKPAGLLSVPGRHPANKDCLITRVQRQYADARIVHRLDMDTSGIMVLAL 76 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPA 135 + + R L + F ER+ K+Y A V+G L+DLPL+CDWPNRP+QKV + GK A Sbjct: 77 SADSHRALSQLFAERKIIKEYEANVYGTIIDDHRLIDLPLLCDWPNRPRQKVDFHHGKNA 136 Query: 136 QTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 QT E V D RV+LKP+TGRSHQLRVH+ +GHPILG FYA A +MA RL L Sbjct: 137 QTWVERVSQHPDGWTRVLLKPVTGRSHQLRVHLAEIGHPILGCEFYAHQRAVSMADRLQL 196 Query: 196 HAEMLTITHPAYGNSM 211 HA L HP G ++ Sbjct: 197 HATKLEFCHPNSGETI 212 >UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria RepID=B1Y046_LEPCP Length = 256 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 137/218 (62%), Gaps = 7/218 (3%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATS 68 P EP + IL+ DD ++VV KP+GLLSVPGR E +D V R+Q +P A VHRLDMATS Sbjct: 39 PSEPLIDILHHDDSLLVVRKPAGLLSVPGRGEHLQDCVAARVQAIWPDALIVHRLDMATS 98 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+A AA+R L F R KQYVA V G + G VDLPL DWPNRP+QKV Sbjct: 99 GLMVMARGPAAQRALGSAFEHRSVTKQYVAVVAGDVAGDAGSVDLPLCADWPNRPRQKVD 158 Query: 129 YETGKPAQTEYEVVEYAADNT-------ARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 G+P+ T + A + + R+ L+P+TGRSHQLRVH+LALGHPILGD Y Sbjct: 159 AAMGRPSLTHWRRATPAHEGSTTGDIDRTRLELEPVTGRSHQLRVHLLALGHPILGDTLY 218 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A + MAPRLLLHA + + HPA G F P F Sbjct: 219 APDAVQRMAPRLLLHASRIALPHPAGGGICVFSDPPAF 256 >UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q0VQA6_ALCBS Length = 229 Score = 206 bits (523), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 104/204 (50%), Positives = 133/204 (65%), Gaps = 1/204 (0%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 +Y+D+H++++NKP+ LLSVPGR E+KD + R+Q+ YP VHRLD+ TSG++V LT Sbjct: 26 IYRDEHLLLINKPAYLLSVPGRAPENKDCAIRRLQQRYPDIRLVHRLDLDTSGIMVFGLT 85 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 A+ +L R F+ R KK+Y A V G G +DLPLI DWP RP QKVC+ETGK A Sbjct: 86 AFAQSKLSRLFQLRTVKKRYQAIVHGLVEKNAGSIDLPLIADWPKRPLQKVCHETGKNAL 145 Query: 137 TEYEVVEY-AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 T Y V+E N R+ L P+TGRSHQLR+H LGHPI+G YA E A++PRLLL Sbjct: 146 THYRVLERDIPGNRTRLALSPVTGRSHQLRIHCRELGHPIIGCDMYAPAEIEALSPRLLL 205 Query: 196 HAEMLTITHPAYGNSMTFKAPADF 219 HAE L HP G F +P F Sbjct: 206 HAEWLAFNHPLTGLWQEFTSPCPF 229 >UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A4VJG2_PSEU5 Length = 244 Score = 206 bits (523), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-YPQAESVHRLDMATSGVIVVA 74 I++QD ++V++KP+ LLSVPGR E+++D ++TR+Q + YP+A VHRLD TSG+IV+A Sbjct: 41 IVHQDAALLVIDKPTLLLSVPGRAEDNRDCLVTRLQENGYPEARIVHRLDWETSGLIVLA 100 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 + REL RQF +RE +K Y A WG P G +DLPL D P +P+ V E GK Sbjct: 101 RDADSHRELSRQFHDRETEKAYTALCWGQPDADSGSIDLPLRYDPPTKPRHVVDPELGKH 160 Query: 135 AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLL 194 A T + V+E D++ RV L PITGRSHQLRVHML++GHP+LGDR YA +A RL Sbjct: 161 ALTFWRVLERCGDHS-RVELTPITGRSHQLRVHMLSIGHPLLGDRLYAHEQALRAHERLC 219 Query: 195 LHAEMLTITHPAYGNSMTFKAPADF 219 LHA MLT+THP G + F++PA F Sbjct: 220 LHASMLTLTHPQTGARLRFESPAPF 244 >UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX2_THICR Length = 241 Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/212 (47%), Positives = 140/212 (66%), Gaps = 3/212 (1%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMAT 67 P Q W +LY+DD I+VVNKP+GLLSVPG+ + + +++ ++Q+ P A VHRLDM T Sbjct: 23 PFQLDW--VLYEDDDIIVVNKPAGLLSVPGKDLDPEMNLLAQVQKHVPTALIVHRLDMDT 80 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++++A KA+ R L QF++R +K Y A +G PS ++G ++LP+ CDW NRP Q + Sbjct: 81 SGIMILAKHKASHRHLSIQFQDRLTEKTYQAICFGKPSTSQGHLNLPMRCDWENRPLQII 140 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 + GK A T +++ DN V L P+TGRSHQLR+HM LGHPILGD YA P++ Sbjct: 141 DLKQGKAASTHWKLTA-QYDNAFEVNLTPVTGRSHQLRLHMKMLGHPILGDNLYADPQSF 199 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A + RLLLHA L +THP +M F+ P Sbjct: 200 AASKRLLLHAASLKVTHPVTKKTMLFEHPTSL 231 >UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID=Q12L72_SHEDO Length = 230 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 133/205 (64%), Gaps = 2/205 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + NY PP PWL I Y D I+V+NKPSGLLS PGR E D+ +TR+QR YP+ + Sbjct: 14 MQVFNYQPPSIPWLDIRYLDRDIIVINKPSGLLSNPGRAPETYDTAITRLQRLYPETILI 73 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++ A K AE LK QF+ R+ KK Y+A V G +G V+ PL D Sbjct: 74 HRLDCDTSGIMIFARNKKAESNLKTQFQNRQAKKVYIAEVSGCFEHQDGKVNFPLGPDPM 133 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 P Q+V E+GKPA T Y ++E+ A +T+ V LKP TGR+HQLRVHM ALGH I+GD F Sbjct: 134 TPPFQQVI-ESGKPALTYYRLLEHRA-STSLVELKPHTGRTHQLRVHMKALGHTIIGDEF 191 Query: 181 YASPEARAMAPRLLLHAEMLTITHP 205 Y A + RL LHA+ LT+ HP Sbjct: 192 YGDETVIAASHRLNLHAQSLTLLHP 216 >UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU65_TERTT Length = 208 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/207 (48%), Positives = 126/207 (60%), Gaps = 3/207 (1%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L I+YQDDHI+ +NKP+GLL+VPG D+ ++ +P + VHRLDMATSG+++ Sbjct: 4 LAIIYQDDHIIAINKPAGLLTVPGLAT--PDNAFDQLVHQHPNSRVVHRLDMATSGLVIF 61 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 + + R F +R+ K Y A V G + G + LPLICDWPNRPKQKV E GK Sbjct: 62 PQSHESLVRFGRLFEQRKMTKTYTATVAGIVAEDRGEITLPLICDWPNRPKQKVDLEQGK 121 Query: 134 PAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 A T+Y+V+E D T R+ L PITGRSHQLRVHM LGHPILGD FYA + + R Sbjct: 122 HAHTQYKVLERRLDLQTTRIELTPITGRSHQLRVHMQQLGHPILGDAFYAPDAIQQASDR 181 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 LLLHA L HP + DF Sbjct: 182 LLLHATTLEFVHPFTQCPTSIHCEPDF 208 >UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q489H0_COLP3 Length = 567 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 142/219 (64%), Gaps = 14/219 (6%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRL 63 NP + L I++QD+H++VVNKP+GLLSVPG+ KDSV TRI+ +PQA VHRL Sbjct: 357 NPAEGIDLEIVFQDEHVVVVNKPAGLLSVPGK--SIKDSVYTRIKTQFPQASGGLIVHRL 414 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 DMATSG++++AL + A + L++QF +E K+YVA + G G + LPL D+ +RP Sbjct: 415 DMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGDFDDRP 474 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRF 180 KQ VC+E GK A+T ++++E DNT+++ L PITGR+HQLR+H L PI+GD Sbjct: 475 KQMVCHEHGKYAETHWQLIE-EVDNTSKLFLYPITGRTHQLRMHCAHPDGLNLPIIGDSL 533 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A RL LHA+ L+ THP +TF+ +F Sbjct: 534 YGHS-----ADRLHLHAQRLSFTHPITKELLTFEVAENF 567 >UniRef50_B7I1Q3 Dual specificity pseudouridine synthase n=17 Tax=Acinetobacter RepID=B7I1Q3_ACIB5 Length = 229 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 129/202 (63%), Gaps = 2/202 (0%) Query: 19 QDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKA 78 +DD ++VV+KP+GLLSV GRL EH DS R+ +P A+ HRLDMATSG+++ A + Sbjct: 29 EDDDLIVVDKPAGLLSVMGRLPEHHDSAYLRVLEKFPLAKVTHRLDMATSGLLMFAKHRD 88 Query: 79 AERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTE 138 AE + + F+ R KK Y+A V G EG V++PLI DW NRP+Q V +E GK A+T Sbjct: 89 AEVAVSKMFQARTVKKHYIALVQGQVK-QEGRVEVPLITDWENRPRQIVHFELGKHAKTL 147 Query: 139 YEVVEY-AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHA 197 ++ + Y + +RV+L+P+TGRSHQLRVHM+ +GHPI+GD+ Y R R+ LHA Sbjct: 148 FQPLVYDETTDQSRVLLEPVTGRSHQLRVHMMHIGHPIMGDKLYHPEPKRFHLNRMALHA 207 Query: 198 EMLTITHPAYGNSMTFKAPADF 219 L HP G + ++ F Sbjct: 208 AYLAFQHPLKGTDVVIESQVPF 229 >UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae RepID=A9BWX6_DELAS Length = 245 Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 131/212 (61%), Gaps = 8/212 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 LY+D ++V++KPSGLL VPGR + +D + R + +P A VHRLD ATSG++V+A Sbjct: 34 CLYEDAELLVLDKPSGLLCVPGRGPDKQDCLSGRALQRWPDALVVHRLDQATSGLVVMAR 93 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEG----LVDLPLICDWPNRPKQKVCYET 131 + A++R L F +R K YVA V G P+ + +DLP+ DW RP + + Sbjct: 94 SLASQRLLSEAFAQRRVHKLYVAVVAGRPAAQQADAWQSIDLPIAADWERRPLRIIDALQ 153 Query: 132 GKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 GKP+QT + + A + T RV L+P+TGR+HQLRVHM ALGH ILGD YA + Sbjct: 154 GKPSQTLWRAMPAATEGHDTPTTRVQLQPVTGRTHQLRVHMAALGHAILGDALYADAAVQ 213 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A++PRLLLHA L + HP G ++ F++ F Sbjct: 214 ALSPRLLLHAHQLELAHPLSGQTLRFESAVPF 245 >UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VZC6_MARMS Length = 212 Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 99/207 (47%), Positives = 130/207 (62%), Gaps = 4/207 (1%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L ILY+D+ V+NKP+ LSVPGR + DS++ R + + +A ++HRLD ATSG+I+V Sbjct: 9 LEILYEDEWFAVINKPANCLSVPGRGPDKLDSILYRAECLFGEAFAIHRLDEATSGLILV 68 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETG 132 A T ++ + FRERE +K+Y A + GH +G V PL CDWPNRP+Q +C E Sbjct: 69 AKTHECQKRMYAHFREREVQKEYRALLRGHLLGEKGEVRKPLRCDWPNRPRQIICTDEWS 128 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 K + T +E + Y +NT RV L P TGRSHQLRVHM +LGH I+GD FY PE + PR Sbjct: 129 KDSITYWEKMAY-ENNTTRVRLVPFTGRSHQLRVHMQSLGHSIIGDEFY-DPEFQN-DPR 185 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 LLLHA L HP + F A F Sbjct: 186 LLLHAYRLEFRHPFTKAWIAFVAACPF 212 >UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter RepID=B0VCN8_ACIBY Length = 212 Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 129/207 (62%), Gaps = 6/207 (2%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 ++Y+DD MV++KPS +LSVPG+ + H DSV+TR+ P+ +HRLD TSG++V L Sbjct: 9 LIYRDDDFMVIHKPSDILSVPGKGDLH-DSVLTRLVAIEPRTLLIHRLDRDTSGILVFGL 67 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPA 135 +K + + RQF++R+ K Y A V GH EG VD+P++ D P V KPA Sbjct: 68 SKRGQSAIARQFQDRQTSKIYEALVAGHLE-GEGTVDIPVVYDPSRPPLHIVDASHNKPA 126 Query: 136 QTEYEVVEY---AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 T ++ +E+ RV L PITGRSHQLRVHM LGHPI+GD YA+PE + + PR Sbjct: 127 LTHWQAIEHFQIQGQPVTRVKLTPITGRSHQLRVHMQYLGHPIVGDTLYAAPE-QLLVPR 185 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA+ L+ HP G S+TF P F Sbjct: 186 LCLHAKQLSFNHPVTGESLTFNCPVPF 212 >UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMR7_9FLAO Length = 561 Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/212 (46%), Positives = 133/212 (62%), Gaps = 14/212 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L I+Y+DD ++V+NKP LSVPG+ KDSV+TR+Q P A +HRLDM+TSG+ Sbjct: 358 LEIIYEDDFLVVLNKPHEFLSVPGKT--IKDSVLTRMQNYLPDATGPLLLHRLDMSTSGL 415 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++VA + + L++QF +R KK+YVA + G P+EG +DLPL D NRP+Q VC E Sbjct: 416 LLVAKNERTHKNLQKQFIKRIVKKRYVALLNGKLEPSEGTIDLPLRVDLNNRPRQLVCDE 475 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEAR 187 GK A+T+YEV+E +N R+ PITGR+HQLRVH L PI+GD Y + Sbjct: 476 HGKLAKTKYEVIE-IKNNKTRIHFYPITGRTHQLRVHAAHYKGLNMPIIGDDLYGTA--- 531 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + RL LHAEML+ HP ++F A F Sbjct: 532 --SNRLHLHAEMLSFEHPVKREWVSFSCKAPF 561 >UniRef50_D0KW62 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW62_HALNC Length = 222 Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/209 (44%), Positives = 135/209 (64%), Gaps = 4/209 (1%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGV 70 EPW ++ D +++ KP+ +L+ PG+ DS++TR+ +++P+A VHRLD TSGV Sbjct: 18 EPWRLLAETAD-FLIIAKPTRMLTQPGKEAHKTDSLITRVNQEFPEARIVHRLDWDTSGV 76 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V+A A R L F++R KK Y+A V P+P +GL+D P+ D +RP+ ++ E Sbjct: 77 MVLARHARAHRALSIAFQDRRTKKCYIAHVDRAPAPPQGLIDRPIGSDREHRPRYRIDEE 136 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA 190 G+P+QT Y V+ AD AR+ L+PITGRSHQLRVH+L++GHPI GD Y P A+ A Sbjct: 137 QGRPSQTRYVVLNETAD-FARLALEPITGRSHQLRVHLLSIGHPIQGDTLY-HPHAQNHA 194 Query: 191 PRLLLHAEMLTITHPAYGNSMTFKAPADF 219 RL+LHAE L+ PA G + TF P F Sbjct: 195 -RLMLHAESLSFPDPASGITQTFSDPVPF 222 >UniRef50_Q12RE8 Pseudouridine synthase n=83 Tax=Bacteria RepID=Q12RE8_SHEDO Length = 593 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 18/223 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRL 63 NP + + ++YQD+H++V++KP+ LSVPG+ DSV TRI RD+P A VHRL Sbjct: 379 NPADDKQITVIYQDEHLLVISKPAEFLSVPGK--NISDSVHTRIIRDFPSASGPIIVHRL 436 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG----HPSPAEGLVDLPLICDW 119 DM+TSG++V+AL K A L++QF R K+Y+A + G + EG++ LPL D Sbjct: 437 DMSTSGLMVIALNKEAHESLQKQFILRTVTKRYIALLDGLLPNRTAGDEGIISLPLRGDL 496 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPIL 176 +RP+Q VC+E GK A+T +++++ T +V L P TGR+HQLRVH L PI+ Sbjct: 497 DDRPRQLVCHEHGKSAETRWQIIDIQQGRT-KVFLYPKTGRTHQLRVHCAHSQGLHLPIV 555 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD Y A RL LHAE L+ THP ++ F+ ADF Sbjct: 556 GDDHYG-----VRASRLHLHAESLSFTHPQSREALHFQLDADF 593 >UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FCX9_ACIAD Length = 214 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 125/207 (60%), Gaps = 4/207 (1%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 ++++D+ MV++KP+G+LSVPG+ + DS++ R+ P+ +HRLD TSG++V L Sbjct: 9 LIHRDNDFMVIHKPAGILSVPGKGDALFDSLLVRLVEIEPKTLLIHRLDRDTSGILVFGL 68 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPA 135 K A+ + RQF+ER+ K Y A V G EGL+D+P++ D P KPA Sbjct: 69 NKMAQSAISRQFQERQTDKIYQALVVGEVY-GEGLIDVPVVYDAARPPLHIADPAHHKPA 127 Query: 136 QTEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 QTE++ +E N R+ L PITGRSHQLRVHM +GHPI+GD YAS + + R Sbjct: 128 QTEWQALEQFELNGKMVTRMRLTPITGRSHQLRVHMQYIGHPIVGDTLYASLADQQLVSR 187 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHAE L+ HP G +TF P F Sbjct: 188 LCLHAEQLSFYHPKTGELVTFHCPVPF 214 >UniRef50_C8Q1E7 Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q1E7_9GAMM Length = 243 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 130/212 (61%), Gaps = 10/212 (4%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 V LY+DD I V++KP GLLSV G+ E K S+ +R+ + P + +HRLDM TSG+I+ A Sbjct: 35 VTLYRDDDIWVIDKPHGLLSVDGK--ELKVSLQSRLLKADPNVKLIHRLDMDTSGIIIFA 92 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 A+ + +QF +R P K+Y A VWG P P +G +D+P+ D P +PK V K Sbjct: 93 RHSEAQTHISKQFIDRIPSKEYQALVWGTP-PQQGEIDVPVRYDPPQKPKHIVDMSWDKR 151 Query: 135 AQTEYEVVEY---AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA----SPEAR 187 A T+YE + + +RV L P+TGRSHQLRVHML +GH +LGD YA + +A Sbjct: 152 AYTKYETLHHELREGKAVSRVALYPVTGRSHQLRVHMLHIGHVMLGDPIYAQDVLNGQAF 211 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ++PRL LHA L + HP G M +++P F Sbjct: 212 DLSPRLCLHARKLRLKHPNTGVWMEWESPVPF 243 >UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales RepID=A0Y082_9GAMM Length = 235 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 124/212 (58%), Gaps = 8/212 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------YPQAESVHRLDMATS 68 ILYQD+ I+V+NKPSGLLS+ G+ E+ DSV R+ + +A+ VHRLD+ TS Sbjct: 24 ILYQDNDILVINKPSGLLSLSGKNSENWDSVHYRLVNGQKGLTPAFLKAKLVHRLDLGTS 83 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G+++V+L + + L +QF+ R KK YVA + G S G +D P+ D P+ K+C Sbjct: 84 GIMLVSLNDVSSKHLNKQFQLRSVKKHYVAVLQGCISEDRGQIDAPIAKDTQLFPRVKIC 143 Query: 129 YETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 GKPA TE+ V++ A+ V P+TGR+HQLR+H +GHPILG Y S + Sbjct: 144 KLEGKPAVTEFNVIKRLANPVRTYVHFSPLTGRTHQLRIHSHFIGHPILGCDLYKSAHSE 203 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ++ RL LHA L HP ++ P+ F Sbjct: 204 KLSKRLQLHASDLFFEHPTTNQAIHIHCPSPF 235 >UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria RepID=Q26D11_9BACT Length = 561 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 14/219 (6%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRL 63 NP + + ++Y+DD I++VNKP LSVPG+ KDSV +R++ YP A VHRL Sbjct: 351 NPGIDKTMEVIYEDDAIIIVNKPEEFLSVPGKT--IKDSVYSRLKELYPDATGPILVHRL 408 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 DM+TSG++V ++ QF R K+YVA + G EG+++LPL D NRP Sbjct: 409 DMSTSGILVATKNLEYYHFIQEQFINRTISKRYVALLNGVLENNEGMIELPLRVDLDNRP 468 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRF 180 Q VCYE GK A+T+Y+V+E T V PITGR+HQLRVH L PI+GD Sbjct: 469 TQLVCYEYGKSARTKYQVLERREKETL-VHFYPITGRTHQLRVHAAHASGLNAPIVGDDL 527 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + RL LHAE + HP +++FKAP F Sbjct: 528 YGTA-----TNRLHLHAEFIKFIHPITHKTVSFKAPVPF 561 >UniRef50_B7VRG6 Pseudouridine synthase n=4 Tax=Vibrionales RepID=B7VRG6_VIBSL Length = 563 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 14/219 (6%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRL 63 NP I+Y+DD I+VVNKP LSVPG+ E DSV TRI+ YP A +HRL Sbjct: 353 NPAVGKSFDIVYEDDEIVVVNKPEEFLSVPGKFIE--DSVYTRIKARYPDATGPLIIHRL 410 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 DM+TSG++++ALT + + +++QF +R +K+Y A + G G + LPL D +RP Sbjct: 411 DMSTSGLLILALTAESNKHIQKQFIDRTVEKRYTALLDGEIDGKSGDISLPLRGDITDRP 470 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRF 180 +Q VC+E G+ A+T +E V + +V L P TGR+HQLRVH LG PI GD Sbjct: 471 RQLVCHEHGRNAETHWEAVS-TNNGKTKVHLYPKTGRTHQLRVHCAHPSGLGVPIRGDDL 529 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y RL LHA L + HP G + F+ P++F Sbjct: 530 YGYKR-----ERLHLHAGYLKLIHPTTGEWIEFEVPSEF 563 >UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PHX6_CHIPD Length = 570 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/212 (44%), Positives = 128/212 (60%), Gaps = 15/212 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--SVHRLDMATSGVI 71 L I+YQD+ ++VVNKPSGL SVPG + DSV TR++ E VHRLDM TSG++ Sbjct: 368 LDIIYQDESVVVVNKPSGLRSVPGVTIQ--DSVYTRLKHALGDIEPLIVHRLDMDTSGLL 425 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 VVA T+AA + ++RQF +R K+Y A + +EG +DLPL D NRP+Q VC+ T Sbjct: 426 VVAKTQAAHKHIQRQFLQRTVSKRYTALLSKVIDTSEGEIDLPLTADLFNRPRQIVCFTT 485 Query: 132 GKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHM---LALGHPILGDRFYASPEAR 187 GK + T ++VV Y A ++ P+TGR+HQLR+H L L PI+GD Y + Sbjct: 486 GKKSVTRWKVVTRYQA--MTKIDFWPLTGRTHQLRMHSAHPLGLNAPIVGDDLYGTA--- 540 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A R+ LHA + THP ++F AP F Sbjct: 541 --AERMYLHAAHIEFTHPLSRQRISFDAPVTF 570 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/215 (45%), Positives = 128/215 (59%), Gaps = 15/215 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMA 66 +E L ILY+DD+++V+NKP G+LSVPG+ + DSV R+ YP+A VHRLDMA Sbjct: 336 RETKLDILYEDDYLLVINKPEGMLSVPGKGD--ADSVYQRLSILYPEATGPIIVHRLDMA 393 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++ A TK A + L+ QF+ R +K+Y+A + G EG + LPL D +RP+Q Sbjct: 394 TSGLLLAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQI 453 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM---LALGHPILGDRFYAS 183 V E GKPA T Y V+E + T + P TGR+HQLRVH L L PILGD Y Sbjct: 454 VSEEFGKPALTHYRVLERTSGKTL-IAFYPQTGRTHQLRVHAAHPLGLHCPILGDELYGR 512 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTF-KAPA 217 A RL LHAE L THP + K+PA Sbjct: 513 -----KAERLYLHAEYLAFTHPITSERIEIQKSPA 542 >UniRef50_Q6AIJ2 Probable ribosomal large subunit pseudouridine synthase A n=1 Tax=Desulfotalea psychrophila RepID=Q6AIJ2_DESPS Length = 211 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 10/212 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L I+Y+DDH++VV KP GLLSVPGR E+ D V +R+Q P+ + VHRLDM TSG+ Sbjct: 4 LKIIYRDDHLVVVIKPGGLLSVPGRGPENSDCVSSRLQAKIPEMITQPAVHRLDMYTSGL 63 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V A++K R L QF+E++ K+Y A + G G + LP D NRP Q + Y+ Sbjct: 64 MVYAVSKEIHRALSIQFQEQQVDKKYTALLEGCLQEVSGEIRLPFRVDLDNRPIQILDYQ 123 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEAR 187 GK T + ++ + RV P+TGR+HQLRVH LG PI+GD FY S Sbjct: 124 HGKMGITLWRKMD-EKNGITRVEFTPMTGRTHQLRVHAAHAKGLGIPIIGDSFYGSGRD- 181 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ++LHA L+ THP G + FK DF Sbjct: 182 --GDEMMLHAHQLSFTHPIIGEKLYFKNDPDF 211 >UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A6TAT3_KLEP7 Length = 263 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 10/222 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMAT 67 PP + +LYQD+H++++NKP+GLLS+ G+ + DSV R+ + YP VHRLD T Sbjct: 42 PPCREQITLLYQDEHLVLINKPAGLLSLSGKDPRNLDSVHHRLVQRYPGCTLVHRLDFGT 101 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++V+A K L +QF +R K Y A + GH + EG+V+ + D P+ + Sbjct: 102 SGLMVIARNKGINALLCQQFSQRTVDKVYTALLCGHLAEDEGIVEAAIAKDPARFPRMAL 161 Query: 128 CYETGKPAQTEYEVVE--YAADN------TARVVLKPITGRSHQLRVHMLALGHPILGDR 179 C GKPA++ Y V++ Y A RV L P TGR+HQLR+H LG+PILG Sbjct: 162 CARHGKPARSRYRVIDRLYQAREGERALALTRVTLTPETGRTHQLRIHCQLLGYPILGCD 221 Query: 180 FYASPE--ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y E APRL+LHA L HP M + + F Sbjct: 222 LYGGRELPGTEQAPRLMLHASELRFVHPVSHEPMHIQQASPF 263 >UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=C7QW59_CYAP0 Length = 551 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/210 (41%), Positives = 125/210 (59%), Gaps = 10/210 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--- 58 G+ N + + ++Y+D I+ ++KPSGLLSVPGR E DSV+TR+Q P A+ Sbjct: 332 GLGNNQSFFKSEIKVIYEDQWIIAIDKPSGLLSVPGRYFETFDSVLTRLQNSLPDAQELR 391 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 +VHRLD TSG++++A + R L +QF +R+ +K Y A + G EG++ LPL D Sbjct: 392 TVHRLDQDTSGILLLARDRYTHRHLSQQFAQRKVEKIYEAILAGSVMMNEGVIQLPLWGD 451 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPI 175 NRP QKV +E GKP+ T+++V+ +N R+ P+TGR+HQ+RVH + LG I Sbjct: 452 PNNRPYQKVDWELGKPSITQFKVIT-TQENLTRIQFIPLTGRTHQIRVHAVDTQGLGSVI 510 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHP 205 LGD Y A RL LHA L HP Sbjct: 511 LGDYLYG---CNAGVSRLHLHARELKFEHP 537 >UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PU24_9BACT Length = 421 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/212 (45%), Positives = 125/212 (58%), Gaps = 18/212 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L I+Y+DD + VV+KP+G+LSVPG+ ++SV+ ++R P A VHRLDMATSG+ Sbjct: 222 LKIVYEDDTLCVVDKPAGMLSVPGK--GCRESVLDVMRRRCPDATGALVVHRLDMATSGL 279 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +VVA T A REL+RQF R +K+YVA + P +G + LPL D +RP+Q V Sbjct: 280 MVVAKTAEAYRELQRQFATRSVRKRYVAILSRQPREPKGEIALPLRPDLDDRPRQVVDSV 339 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEAR 187 GKPA T YE++ + RV L P TGR+HQLRVH L PI GD Y Sbjct: 340 YGKPALTHYEII-----DGCRVALYPRTGRTHQLRVHCAHRDGLDSPIKGDELYGR---- 390 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L HPA G + F + A F Sbjct: 391 -RAERLYLHAEWLAFRHPATGEEVEFTSVAPF 421 >UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=Q5E092_VIBF1 Length = 576 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 124/212 (58%), Gaps = 14/212 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L I+Y+DD +++VNKP LSV G+ DSV RIQ YP A VHRLDM+TSG+ Sbjct: 373 LEIVYEDDVLVIVNKPVEFLSVSGKYI--SDSVHARIQARYPNATGPLIVHRLDMSTSGL 430 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V+ LT + +++++QF ER +K+Y A + G+ G ++LPL D +RP+Q V ++ Sbjct: 431 LVLTLTAESNKQVQKQFIERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRPRQMVNHK 490 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRV---HMLALGHPILGDRFYASPEAR 187 +G+ A+T Y+V+ T +V L P TGR+HQLRV H L PI+GD Y Sbjct: 491 SGRKAETHYQVIAQEGKRT-KVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLYGFK--- 546 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHA L HP ++ F P DF Sbjct: 547 --ADRLHLHAGYLKFKHPTTNETVEFSCPEDF 576 >UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1Z5_9PROT Length = 579 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 16/212 (7%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGVIV 72 I+Y+DD ++VVNKP+GL+S PGR E ++S+ +R+ + YPQ VHRLDM TSG+++ Sbjct: 376 IVYEDDQLLVVNKPAGLMSTPGR--EIEESLFSRLAQRYPQIPELTLVHRLDMDTSGLLL 433 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGH--PSPAEGLVDLPLICDWPNRPKQKVCYE 130 VA + L++QF ER +K Y A + P +G ++LPL D +RP+Q VCY+ Sbjct: 434 VAKDLRTHKRLQKQFIERSVEKCYEAVLVKRLPAQPDQGRIELPLRVDLDDRPRQMVCYQ 493 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEAR 187 GKPA T ++++ +N R+ P TGR+HQLRVH L I+GD Y P Sbjct: 494 HGKPATTRWQIIAR-ENNRTRIWFYPETGRTHQLRVHASHRDGLNAAIVGDGLYGLP--- 549 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL+LHA L THP M F+ PA F Sbjct: 550 --AERLMLHARRLCFTHPVSREPMVFELPAPF 579 >UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q1CZL9_MYXXD Length = 559 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV---HRLDMATSGV 70 L I+++D+ ++VV KP GLLSVP + +DSV+ R++ P+A HRLD+ TSG+ Sbjct: 354 LDIVFEDEWLVVVEKPEGLLSVPAKDVSVEDSVLARLRARAPEAAGTMLAHRLDLDTSGL 413 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V A L+RQF RE K+Y A V G+ G +D P+ D +RP+Q Sbjct: 414 LVAAKDARTYAALQRQFAGREVHKRYAAWVEGNVQGERGTIDFPMRVDLDDRPRQIHDPV 473 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM---LALGHPILGDRFYASPEAR 187 GKPA TE+ V+E + T +V L P+TGR+HQLRVH L LG PI+GDR Y P Sbjct: 474 HGKPAVTEWHVLERSHGRT-KVALFPLTGRTHQLRVHAAHPLGLGAPIVGDRLYGHP--- 529 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 PRL LHAE L+ HP G +T + PA F Sbjct: 530 --GPRLHLHAEALSFQHPVTGQRLTLERPAPF 559 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 125/218 (57%), Gaps = 19/218 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L I+Y+D+ ++VVNKP+G+LSVPG+ + DSV R++R YP A VHRLDMATSG+ Sbjct: 337 LEIVYEDESLLVVNKPAGMLSVPGKSD--VDSVYQRVRRMYPGATGPMVVHRLDMATSGL 394 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++VA TK + L+ QF+ R K+YVA + G EG ++LPL D +RP+Q V Sbjct: 395 MLVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQVVDVV 454 Query: 131 TGKPAQTEYEVVEYAADNTAR------VVLKPITGRSHQLRVHM---LALGHPILGDRFY 181 GKPA T+Y V+ Y V P TGR+HQLRVH L L PI+GD Y Sbjct: 455 HGKPAVTDYRVLRYGGCKGGLRTTPTVVSFVPKTGRTHQLRVHSAHPLGLNAPIVGDELY 514 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L THP G M + A F Sbjct: 515 GKK-----ADRLYLHAEYLGFTHPVSGVYMEVEKEAGF 547 >UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XN95_SYNP2 Length = 538 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 127/209 (60%), Gaps = 12/209 (5%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L I+Y+D ++ ++KP+GL S+PGR + DS +R++RDY VHRLD TSG+++ Sbjct: 339 LEIIYEDHSLIAIHKPAGLPSIPGRSSQTYDSAFSRLRRDYQDIFLVHRLDQDTSGILLF 398 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A +++L+ QFR R+ K+Y A + EG++ LPL D +RP+QKV + GK Sbjct: 399 AKNAETQQDLQTQFRRRKIHKEYEALLEEKIQRPEGMITLPLWADPGDRPRQKVDAQRGK 458 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEARAMA 190 P++T + + ++ R+ LKPITGR+HQLRVH L +PILGDR Y + RA A Sbjct: 459 PSETYFVKL-----DSHRLKLKPITGRTHQLRVHCAHPNGLNNPILGDRLYGN---RA-A 509 Query: 191 PRLLLHAEMLTITHPAYGNSMTFKAPADF 219 PRL L A LT HP N T ++ +F Sbjct: 510 PRLHLQATALTFMHPETKNPHTIQSAPEF 538 >UniRef50_A5WHV7 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WHV7_PSYWF Length = 237 Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 7/210 (3%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 V +Y+D+ +++V+KP+GLLS+ G+ + K S+++R++R P+ + +HRLDM TSG+++ A Sbjct: 30 VTVYEDEDLLLVDKPAGLLSIDGK--DLKVSLLSRLERANPEVKLIHRLDMDTSGLMIFA 87 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPS--PAEGLVDLPLICDWPNRPKQKVCYETG 132 K A+ + +QF ER P+K+Y A V G + +G +++P+ + +PK E Sbjct: 88 KNKQAQTHISKQFIERIPQKEYQAIVQGTLAIPGKKGEINIPVRYEPSIKPKHVADPEWK 147 Query: 133 KPAQTEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM 189 K A T YEV+ + RV L P+TGRSHQLRVHM+ LGH I+GD YA EA ++ Sbjct: 148 KHALTHYEVLHHELRKGRPVTRVALHPVTGRSHQLRVHMVHLGHVIIGDPIYAEGEALSL 207 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPADF 219 APRL LHA L + HP M +++ F Sbjct: 208 APRLNLHAHKLRLKHPTMNTWMAWESAVPF 237 >UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDP7_9BACT Length = 556 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 124/220 (56%), Gaps = 22/220 (10%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGVIVV 73 LY+D + V+ KP GLLSVPG+ + + SV ++R Y +A VHRLDMATSG++++ Sbjct: 342 LYEDRELAVIYKPEGLLSVPGK-DAAQPSVYALMRRKYQEATGPLIVHRLDMATSGLMII 400 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPA-----------EGLVDLPLICDWPNR 122 A T+ A L+++F +K+YVA V G + G + LPLI D+ +R Sbjct: 401 AKTEFAYHRLQKEFLNHRVQKKYVAIVCGKDKESCNRILKEAEGGRGYISLPLIADFLDR 460 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDR 179 P+Q V E GK A TEYEV+E D R+ L P TGR+HQLRVH L PI+GD Sbjct: 461 PRQMVNREQGKEAITEYEVLERIDDTHLRLALYPKTGRTHQLRVHCAHQEGLNAPIIGDP 520 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + A RL LHAE +T HP G MT ADF Sbjct: 521 LYGNEP----ATRLHLHAEEITFEHPMTGKKMTVTRKADF 556 >UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE05_GEMAT Length = 476 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 10/217 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDM 65 P EP ++Y+DDH++VVNKPSG+L+VPGR +D VMTR++ YP A VHRLD+ Sbjct: 264 PNEP--AVVYEDDHLLVVNKPSGMLTVPGRGPTMQDCVMTRLRARYPDATGQMVVHRLDL 321 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++ A L+R F RE K YVA + G + G + LPL D +RP+ Sbjct: 322 DTSGLLLAAKDPITASALQRLFSLREIDKHYVAWLDGVVTDDHGHIHLPLRMDVDDRPRN 381 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYA 182 GKPA TE++V+ D RV P TGR+HQLRVH L PI+GDR Y Sbjct: 382 IHDPVFGKPAHTEWQVMAR-TDGRTRVRFTPHTGRTHQLRVHAAHPDGLDAPIVGDRLYG 440 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L HP G + + PA F Sbjct: 441 R-TAPDEDERLQLHAERLAFVHPVSGAKVVVEQPAPF 476 >UniRef50_A5ZGG0 Pseudouridine synthase n=4 Tax=Bacteroides RepID=A5ZGG0_9BACE Length = 590 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 132/247 (53%), Gaps = 41/247 (16%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRL 63 N ++ L I+++D+ ++VVNKPSG+LSVPG+ EE DSV R++ YP A VHRL Sbjct: 351 NTHKDTELEIVFEDEWLVVVNKPSGMLSVPGK-EEDMDSVYHRLKEKYPDATGPMIVHRL 409 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG--------------------- 102 DMATSG+++VA TK + L+ QF R KK+Y+A + G Sbjct: 410 DMATSGLLLVAKTKEVHQHLQAQFENRSIKKRYIALLDGCITETEETTNQTTGNTRKTEK 469 Query: 103 -------HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLK 155 + G ++LPL + +RP Q V E GK A TEY+++ + +T R+ Sbjct: 470 VRATEVISTTGKVGRIELPLCPNPLDRPCQSVDEEHGKEAITEYQIITNSEKHT-RIAFC 528 Query: 156 PITGRSHQLRVHML---ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMT 212 P+TGR+HQLRVH L PILGD Y A RL LHAE + HP YG+ + Sbjct: 529 PLTGRTHQLRVHAAHPKGLNCPILGDELYGKK-----ADRLYLHAEYIEFRHPIYGDIIC 583 Query: 213 FKAPADF 219 + DF Sbjct: 584 IQKEPDF 590 >UniRef50_C5VJ38 Pseudouridine synthase n=2 Tax=Prevotella RepID=C5VJ38_9BACT Length = 571 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 121/216 (56%), Gaps = 18/216 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 L ILY+DD++ VV KPSGLLS+PG+ + S++ + A VHRLDMATSG++V Sbjct: 360 LQILYEDDYLAVVVKPSGLLSIPGKGCQASIYSILCERWKGKSDAFMVHRLDMATSGLLV 419 Query: 73 VALTKAAERELKRQFREREPKKQYVA----RVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 VA T + L+ QF R KK+YVA + PAEG ++LPL D +RP+Q+V Sbjct: 420 VARTSEVHKALQAQFIGRTVKKKYVALLPLSILEKQLPAEGRIELPLSPDPDDRPRQRVD 479 Query: 129 YETGKPAQTEYEVVEYA-----ADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRF 180 GKPA TEY ++ A ++ L P+TGR+HQLRVH LG PI+GD Sbjct: 480 RTNGKPAITEYRLIGKTTYGKEALEAVKIALYPLTGRTHQLRVHCAHPDGLGTPIIGDNL 539 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y A RL LHA L THP M+F P Sbjct: 540 YGQ-----RAERLWLHATHLEFTHPITQERMSFDTP 570 >UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1W0M0_9BACT Length = 566 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 126/218 (57%), Gaps = 16/218 (7%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMA 66 Q L ++Y+DD ++VV+KP+G+LSVPGR + SV + ++ P + SVHRLDMA Sbjct: 347 QHSQLHVVYEDDALIVVDKPAGILSVPGR--SQRPSVYSILRSQMPSSVELFSVHRLDMA 404 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++++A R L+RQFR +K+Y+A + G S EG+V LPL D +RP+Q Sbjct: 405 TSGLLILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQV 464 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYAS 183 V +E GK A T Y V+ T V L P TGR+HQLR+H L PILGD Y Sbjct: 465 VDWEHGKKAVTSYRVLNVRHGKTW-VALFPETGRTHQLRMHCAHAEGLNCPILGDPLYGH 523 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 A RL LHA +T HP G +T A PADF Sbjct: 524 -----HANRLYLHATSITFEHPISGQLLTLHAQPPADF 556 >UniRef50_B2J8D4 Pseudouridine synthase n=7 Tax=Cyanobacteria RepID=B2J8D4_NOSP7 Length = 575 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 10/216 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMA 66 +E L I+Y+D+ ++ VNKP GLLSVPGR + +DSV++R++ P SVHRLD Sbjct: 364 EEVTLPIIYEDEWLIAVNKPPGLLSVPGRYRDRQDSVLSRLRHLLPDGMALASVHRLDQE 423 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++++A + ++L +QF++R+ K Y A + G +G++DLPL D NRP QK Sbjct: 424 TSGILLLARDRQTHKQLSQQFQQRQVHKVYEAILSGVAIAEKGVIDLPLWGDPENRPYQK 483 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH---MLALGHPILGDRFYAS 183 V ++ GKP+ T+++V+ D T R+ P+TGR+HQLRVH + LG ILGDR Y Sbjct: 484 VDWQNGKPSLTQFQVISREQDYT-RIEFTPLTGRTHQLRVHAADVRGLGITILGDRLYGC 542 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A+ RL LHA L HP ++ KA F Sbjct: 543 D---AVTSRLYLHARELDFEHPQLKKTLYLKAITLF 575 >UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P480_PHYIN Length = 363 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 123/221 (55%), Gaps = 17/221 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L IL++DD ++VVNKP+ +LSV G + SV + R YP A VHRLD TSG++VV Sbjct: 117 LKILFRDDAVIVVNKPANILSVDGTDPDALMSVHRCVARVYPNARMVHRLDQETSGLLVV 176 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWG-------HPSPAEGLVDLPLICDWPNRPKQK 126 ALTK+A + L QFR+R K YVARV G S + V +P+ Q Sbjct: 177 ALTKSAAQSLNAQFRDRSVDKTYVARVDGWMMNDLEEKSESPRRVQIPMEKHLTKSLIQH 236 Query: 127 VCYE------TGKPAQTEYEVV---EYAADNTARVV-LKPITGRSHQLRVHMLALGHPIL 176 V + + + TEY V+ E D + +V LKP+TG++HQLR+HM LGHPIL Sbjct: 237 VVSDREVDPSSSLWSTTEYSVLSRDESGDDRKSTLVELKPVTGKTHQLRLHMQHLGHPIL 296 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 GD Y+ A RL LHA L+ THP +TF++P Sbjct: 297 GDSLYSPDVVYHRASRLCLHAAKLSFTHPVTNERLTFESPC 337 >UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BRU5_DESAD Length = 214 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 10/215 (4%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMAT 67 E L I+Y D I+VVNKPSGLLSVPGR E++D V+TR+Q+ +P+ +VHRLDM T Sbjct: 4 EKLLDIVYADRKIVVVNKPSGLLSVPGRGPENQDCVVTRVQKMFPECRKFPAVHRLDMDT 63 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++V+ LT A REL QF++R+ KK+Y A + G G++++ D NRP Q Sbjct: 64 SGLLVLGLTARAVRELMEQFQKRQVKKRYEALLEGIVKEDSGVIEMAFRLDPYNRPYQVY 123 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASP 184 GK T + + + RV P+TGR+HQLRVH LG PI+GDR Y S Sbjct: 124 DPIHGKLGITHWRKLG-VENGMTRVEFTPLTGRTHQLRVHSAHPQGLGCPIVGDRLYGSG 182 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 +L LHA L HP M F+ F Sbjct: 183 TEPG---QLKLHAGYLCFEHPKTKEKMEFEIAPLF 214 >UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aeruginosa RepID=B0JGC2_MICAN Length = 501 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L I+Y+D+ I+ +NKP+GLLSV GR ++ +D+V+ R +R VHRLD TSG++++ Sbjct: 300 LEIIYEDEGIIAINKPAGLLSVAGRYQDSQDAVVNRFRRQGKNLIPVHRLDRETSGILLL 359 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A + R L +QF+ RE +K Y A + G++DLPL + NRP Q V ++ GK Sbjct: 360 AKSLDIYRCLSQQFQRREVEKIYEAILSEIIERESGIIDLPLWGNPQNRPYQTVDWQRGK 419 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH-MLALGHPILGDRFYASPEARAMAPR 192 +QT ++VV N +R+ P TGR+HQ+RVH LG ILGDR Y + + R Sbjct: 420 ASQTYFKVVGKEG-NYSRLEFIPYTGRTHQIRVHSQQGLGIGILGDRLYNGKQ----SDR 474 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA+ L+ HP N + P F Sbjct: 475 LHLHAKQLSFRHPQTENKLDLIIPTPF 501 >UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elongatus RepID=Q31NG5_SYNE7 Length = 543 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 113/199 (56%), Gaps = 12/199 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGV 70 L ILY+D ++ + KP+GLLSVPG + S + +++ +P + VHRLD ATSG+ Sbjct: 338 LPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCVVHRLDQATSGI 397 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++VA + + L QFR R+ K Y A + G P G +DLPL DW RP Q V + Sbjct: 398 LLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTIDLPLRPDWTRRPYQLVDRD 457 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEAR 187 G+PA T Y ++ D R+ L+PITGR+HQLRVHM LG PILGD Y Sbjct: 458 RGRPALTYYRCIDQTGDR-CRMELEPITGRTHQLRVHMAHPEGLGQPILGDDLYGQS--- 513 Query: 188 AMAPRLLLHAEMLTITHPA 206 + RL LHA + HP+ Sbjct: 514 --SDRLYLHARSIRFRHPS 530 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 15/216 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----------VHRL 63 L +L++D H++ VNK +G++ PG + +D+++ + + S VHRL Sbjct: 80 LTVLFEDKHMLAVNKAAGMVVHPG-VATSEDTLVHALLAHCAGSLSGIGGVERPGIVHRL 138 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+GVIVVA T AA R L QF R KK+YVA V G P G +D I P Sbjct: 139 DKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSIDRA-IARHPVHR 197 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA- 182 + E G+PA+T++E+VE D A V + TGR+HQ+RVH+ +LGHPILGD Y Sbjct: 198 HRMTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLKSLGHPILGDALYGW 257 Query: 183 SPEAR-AMAP-RLLLHAEMLTITHPAYGNSMTFKAP 216 PE R A P R++LHAE L +THP G + +AP Sbjct: 258 KPEPRLATQPARVMLHAEHLVLTHPISGKELDLRAP 293 >UniRef50_A6FXR5 Pseudouridine synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXR5_9DELT Length = 509 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 46/245 (18%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ----------------RDYPQAES 59 ++Y+DD ++VV+KP G+LSVPGR +DSV R++ + P A S Sbjct: 270 VVYEDDDLLVVDKPPGMLSVPGRGPRRRDSVEYRLKARANPDAIEAAVAAQSKSKPPAGS 329 Query: 60 -----------------VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG 102 VHRLD+ATSG+++ A + A L+RQF R+ K+YVA V G Sbjct: 330 EARTAAGPRLDQLWPRLVHRLDLATSGLLIAAKHREAYVALQRQFSSRQIGKRYVALVRG 389 Query: 103 HPSP----AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTA-RVVLKPI 157 P P G ++LPL D +RP+QKV GK A+T ++++ + ++ A RV L P Sbjct: 390 -PLPDALGEGGEIELPLARDLDDRPRQKVDRREGKVARTRWQLLAHEPEHAASRVALYPH 448 Query: 158 TGRSHQLRVHML---ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 TGR+HQLR+H L P++GD Y E RL+LHAE LT HP G M + Sbjct: 449 TGRTHQLRLHAAHPEGLDAPLVGDLLYGYGE----GARLMLHAERLTFLHPTRGEPMELR 504 Query: 215 APADF 219 +P F Sbjct: 505 SPCPF 509 >UniRef50_D1QMM7 Pseudouridine synthase n=1 Tax=Prevotella oris F0302 RepID=D1QMM7_9BACT Length = 522 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 122/210 (58%), Gaps = 19/210 (9%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---VHRLDMATSGVIVV 73 +Y+D I+VV KP+G+LSVPG+ +++V + +++ +P+A VHRLDMATSG++VV Sbjct: 325 IYEDKDIVVVCKPAGMLSVPGK--SLRENVRSLVRQRHPEATGPMIVHRLDMATSGLLVV 382 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWG-HPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 AL + +L+RQF E +K+YVA + H G + LPL D +RP+Q V G Sbjct: 383 ALNLKSYIDLQRQFEEHSVQKRYVALLSRPHHGARSGQISLPLRPDLYDRPRQIVDAVHG 442 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYASPEARAM 189 + A T Y+ R+ L P+TGR+HQLR+H L +PI GD Y + + Sbjct: 443 RKAVTNYQQT-----GENRMNLYPLTGRTHQLRMHCAHADGLNNPIKGDELYGTRDE--- 494 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPADF 219 RL LHAE L+ HP G M F+ ADF Sbjct: 495 --RLYLHAEELSFVHPGTGKRMHFECHADF 522 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 122/224 (54%), Gaps = 23/224 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLL-----SVPGRLEEHKDSVMTRIQRDYPQAES---- 59 P+E L +L+QDDH++V NKP+GL S P + +++ R+ +PQ Sbjct: 75 PEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCP------EQTLVQRLLGRFPQLSRLEGQ 128 Query: 60 ----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHRLD TSG++VVALT+A L F ER+ K+Y+A V G P P EG PL Sbjct: 129 RPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLP-PLEGQCREPL 187 Query: 116 ICDWPNRPKQKVCYET--GKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALG 172 + K V E G+ A TE+ + D + ++ I TGR+HQ+RVHM LG Sbjct: 188 GRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQIRVHMTHLG 247 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +P+LGDR YA + MAPR +LHA L THPA G M F P Sbjct: 248 YPLLGDRLYAPKAVQNMAPRQMLHAWRLGFTHPASGEDMRFTCP 291 >UniRef50_C2HWY8 Pseudouridine synthase n=2 Tax=Vibrio cholerae RepID=C2HWY8_VIBCH Length = 177 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/118 (52%), Positives = 81/118 (68%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M YNPP+EPW+ ++Y+D+HI+ NKPSGLLSVPGR EH DS+ R+ P + V Sbjct: 1 MAMTEYNPPKEPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 HRLDM+TSG+I+ A K E LK+QF+ R K Y ARVWG EG V+LP++C+ Sbjct: 61 HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQDEGEVNLPIVCN 118 >UniRef50_D1XZI5 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XZI5_9BACT Length = 577 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 19/212 (8%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 IL++D+++ V++KP+GLLSVPG+ L +++ + + + VHRLDM TSG++VVA Sbjct: 364 ILFEDNYLAVIDKPAGLLSVPGKKLATSVYALLKQKWQGRCKPYMVHRLDMDTSGLMVVA 423 Query: 75 LTKAAERELKRQFREREPKKQYVA----RVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +L++QF R K+Y A + P +G + LPL D +RP+QKV E Sbjct: 424 KQAHVYHDLQQQFINRTVNKRYTAFLPLSLLDKNLPPKGKIILPLTADLFDRPRQKVDKE 483 Query: 131 TGKPAQTEYEVV------EYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFY 181 GK A T YE+V E RV+L P TGR+HQLRVH LG PI+GD Y Sbjct: 484 VGKIAITTYEIVGKTHYGERLKQLAVRVLLYPHTGRTHQLRVHCAHSEGLGTPIIGDNLY 543 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTF 213 + A RL L+A+ L HP MTF Sbjct: 544 GNK-----ANRLHLYADRLRFVHPITHKEMTF 570 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 122/216 (56%), Gaps = 17/216 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRLDMATS 68 L IL++DDH+++++KP+GL+ PG H + + P+A VHRLD T+ Sbjct: 109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTT 168 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++VVA T A+ +L RQ ++R K+ Y+A V G +G+VD P I P + Sbjct: 169 GLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLE-KDGVVDAP-IGRHPIHRTRMAV 226 Query: 129 YETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY------ 181 + GKPA+T Y V+E + A L+ TGR+HQ+RVH+L++GHP+ GD Y Sbjct: 227 VQNGKPARTHYRVLEKFTASTLLHCSLE--TGRTHQIRVHLLSIGHPLAGDPVYGRTSPD 284 Query: 182 -ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 ++ +A PR LHA L +THP G + +++P Sbjct: 285 PSTADAVVRLPRQALHAWQLELTHPHSGQILLWESP 320 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 11/217 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------V 60 P + L + + D+ ++VVNK + P + +++ R+ +P S V Sbjct: 77 PDDGPLNVFFADEDLVVVNKTPAMTVHPAP-SVAEPTLVHRVAHHFPALLSQSGERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+IV+AL+++A L + F RE K+Y+A V G P + G V L L Sbjct: 136 HRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPD-SSGTVSLALGRHPS 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDR 179 + + V G+ A+T +E++ AAD +A +V ++ +TGR+HQ+RVHM ALGHP+LGD Sbjct: 195 IKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAALGHPLLGDA 254 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 YA + A APR +LHA L HP SM F AP Sbjct: 255 VYADKQTAARAPRQMLHAWQLRFEHPRSFESMEFCAP 291 >UniRef50_B8CCD9 Predicted protein (Fragment) n=2 Tax=Thalassiosira pseudonana RepID=B8CCD9_THAPS Length = 337 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 46/249 (18%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMA 66 L ++Y+D+HI+V+NKPSG+L+VPG+ + + ++ + ES VHRL M Sbjct: 92 LDVVYEDEHIVVINKPSGVLTVPGK---DDNPSLNKVVFERFGCESNRMDKMVVHRLGMD 148 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW------P 120 TSG++V A T +A REL FR R+ ++Y A V GH + G +DL L+ D+ Sbjct: 149 TSGLVVFARTNSALRELNSLFRTRKVTRKYEALVCGHLAKDSGDIDLSLMRDYEALIGLD 208 Query: 121 NRPKQKVCYETGKPAQTEYEVV---EYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + K E+ K + T++EV+ E R+ L I+GR+HQL VH A+GHPI+G Sbjct: 209 SGEVGKKLLESPKESMTKFEVISKEEMNGKKVTRIALTSISGRTHQLNVHCAAIGHPIVG 268 Query: 178 DRFY-----ASPE---------------------ARAMAPR-LLLHAEMLTITHPAYGNS 210 D Y A+P A A+A + + +HA+ ++ HP + Sbjct: 269 DTVYGFGGEAAPNGGLEESDLPEDRASEALQKDIAEAVAGKPMCVHAKSISFDHPVTKEA 328 Query: 211 MTFKAPADF 219 ++F A F Sbjct: 329 LSFDCAAPF 337 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 24/228 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------VHRLDM 65 L +LY D ++V+NKP+GL P + +++ R+ +P + VHRLD Sbjct: 93 LKLLYLDGDVLVLNKPAGLTIHPAS-SQPDGTLVNRLLHHFPDMRAMAGDRPGIVHRLDK 151 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++VA T++A L F ER K Y+A V G P ++G+++LP+ D + K Sbjct: 152 DTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRDPKHPTKM 211 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALGHPILGDRFYASP 184 V + G+ A++ +++ A D TA ++ I TGR+HQ+RVHM A+GHPI+GD Y + Sbjct: 212 AVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVHMAAMGHPIVGDAVYGAR 271 Query: 185 E-----------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + AR +A R +LHA L +HP G ++F PADF Sbjct: 272 QHSDWTRRGGAMAR-LAKRQMLHAWKLAFSHPGTGEELSFCQPPPADF 318 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 20/222 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------V 60 P+E +L IL+ D+H+ ++NKP GL P + +++ R+ + +P+ V Sbjct: 78 PEEGFLEILFSDEHLAIINKPPGLTVHPAP-SCQESTLVHRLLKYFPKLIEQGGLRPGIV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++ +ALT+ +L + F +R+ K+Y+A V G PS EG + +PL D Sbjct: 137 HRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPS-MEGYIAVPLGRD-- 193 Query: 121 NRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALGHPIL 176 PK KV GKPA TE+ V+ ++ ++ I TGR+HQ+RVHM +GHP++ Sbjct: 194 --PKTKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMKHIGHPLV 251 Query: 177 GDRFYASPEARAM--APRLLLHAEMLTITHPAYGNSMTFKAP 216 GD+ YA R +LHA L+ HP G M F P Sbjct: 252 GDKLYAGGHVNKTFQCNRQMLHAWKLSFEHPITGKKMNFLCP 293 >UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine synthase, RluD subfamily protein n=3 Tax=candidate division TM7 RepID=UPI00016B2413 Length = 379 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 113/207 (54%), Gaps = 13/207 (6%) Query: 17 LYQDDHIMVVNKPSGLLS-VPGRLEEHKDSV-----MTRIQRDYPQAESVHRLDMATSGV 70 +Y+D+ I+V+NKP+G+L+ G + E + +T + D + +HRLD TSGV Sbjct: 177 IYEDNDIIVINKPAGMLTHAKGAIAEEFTAADIVKPITNYKADTNRPGIIHRLDRNTSGV 236 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +++ A ++++QF +R KK Y A V G P + L+DLP I P+RP Sbjct: 237 LLMVKNSDAASKIQKQFSQRTVKKTYYAIVCGIPYQHKALIDLP-IERNPSRPSTFRVGV 295 Query: 131 TGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM 189 GK AQT YEV N + + L+P TGR+HQLRVHM L PILGD Y A Sbjct: 296 NGKSAQTSYEVERSIIKKNISLIKLQPKTGRTHQLRVHMQYLNTPILGDLVYGGKPAE-- 353 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAP 216 R+ LHAE L +T + G FKAP Sbjct: 354 --RMFLHAESLEVTLLS-GERKVFKAP 377 >UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae RepID=Q0BUM2_GRABC Length = 366 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 116/218 (53%), Gaps = 25/218 (11%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMT--RIQRDYPQAESVHRLDMAT 67 E W ILY+DDH++V+NKPSGL S G + H D ++ R RD + VHRLD T Sbjct: 122 ESW--ILYKDDHLIVLNKPSGLPSQGGPGITRHLDGLLDGLRFGRD-DRPRLVHRLDRDT 178 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SGVIV+A + +L FR RE +K Y A V G P P EG +D PL+ N + V Sbjct: 179 SGVIVIARSPGVAAKLAALFRTRETEKVYWAVVAGRPVPVEGRIDRPLLRQ--NDRNEPV 236 Query: 128 CYETGK-----PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K A T+Y +++AA A + L+P+TGR HQLRVH A+ PILGD Y Sbjct: 237 VLADRKDRDKVTAITDYRTLDHAARKLAWLELRPLTGRMHQLRVHCAAMDAPILGDERYG 296 Query: 183 S------------PEARAMAPRLLLHAEMLTITHPAYG 208 S ++ RL LHA L++ HPA G Sbjct: 297 SWRNTDERGVRNTALVEGLSRRLHLHARRLSLPHPAGG 334 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 108/200 (54%), Gaps = 6/200 (3%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 IL++D H++V+NK +GL G H D ++ + VHRLD TSGV+V+ Sbjct: 95 AILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLADGGETPRLVHRLDKDTSGVLVL 154 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ-KVCYETG 132 A T+AA R L FR RE K Y A V G P +G + L R ++ ++ E G Sbjct: 155 ARTQAAARALTSAFRSREALKVYWAIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEEG 214 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP----EARA 188 K A T++ VV+ AA A V L P TGR+HQLRVH L +G PILGD Y P E Sbjct: 215 KRAVTDFRVVDQAAKACAWVELHPRTGRTHQLRVHCLEMGTPILGDGKYGGPGAFLEGTE 274 Query: 189 MAPRLLLHAEMLTITHPAYG 208 + R+ LHA L + HPA G Sbjct: 275 LPKRMHLHARALALPHPAGG 294 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 121/240 (50%), Gaps = 32/240 (13%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYPQAE 58 P++ L ILY D+++ V+NK + ++ PGR L+ H DS ++ + Y +A Sbjct: 86 PEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDS-LSDVAGQY-RAG 143 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+VVA + L RQF ER +K+Y A VWG V+ + Sbjct: 144 IVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDADYVETYVRVS 203 Query: 119 WPNRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + NR + VC + + A T YEV + T V L+P TGR+HQLRVHM LGHPI+ Sbjct: 204 FRNRERMMVCPPGDNARQAATFYEVQQRFRGFTY-VKLQPQTGRTHQLRVHMHHLGHPII 262 Query: 177 GDRFY-------------ASPEA--RAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 DR Y +PE + R LHA L HP M F+A PADF Sbjct: 263 ADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEAPLPADF 322 >UniRef50_B4UM41 Pseudouridine synthase, RluA family n=4 Tax=Anaeromyxobacter RepID=B4UM41_ANASK Length = 302 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 110/214 (51%), Gaps = 18/214 (8%) Query: 16 ILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRDYPQAESVHRLDMATSG 69 +LY D + V+KP+G+ + P G L E +++ VHRLD TSG Sbjct: 83 LLYADADLCAVDKPAGVPAQPTLTTDRGALPELVSALLG------APVTLVHRLDRETSG 136 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 V V A T+ A L FR P+K Y+A PSPAEG V L L D P RP + Sbjct: 137 VTVFARTRDAAAALAEAFRTGTPEKTYLALCARAPSPAEGRVALALGKD-PARPGLRRVD 195 Query: 130 ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE--AR 187 G PA T Y + A ARV +P TGR+HQ+RVH+ ALG P+LGD Y P Sbjct: 196 PAGDPAATRYRTLREAPGG-ARVEARPETGRTHQIRVHLAALGAPLLGDARYGGPRRVGE 254 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 PR++LHA L + HPA G M F+A P DF Sbjct: 255 VAVPRVMLHATRLELPHPATGARMVFEAEPPEDF 288 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 122/240 (50%), Gaps = 31/240 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLS--VPGRLEEHKDS---VMTRIQRDYPQAES---- 59 P++ L ++Y+DD + V+NKP+G++ G EE ++ V + R +E Sbjct: 77 PEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDM 136 Query: 60 ----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHRLD TSG+IVVA A R+L QF R K+YVA V G P +G ++LP+ Sbjct: 137 RPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPI 196 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALG 172 D R + G+ A + YEV +E A V +K TGR+HQ+RVHM +LG Sbjct: 197 ARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEVKIETGRTHQIRVHMASLG 256 Query: 173 HPILGDRFYASP-EAR------------AMAPRLLLHAEMLTITHPAYGNSMTF--KAPA 217 HP++GD Y +P E R A R LHA + + PA G ++ F K PA Sbjct: 257 HPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTKVPA 316 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 121/245 (49%), Gaps = 36/245 (14%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV--- 60 +N PP++ + I+Y+DD I ++NKPS ++ PG+ + ++ +Q + Q V Sbjct: 83 DNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGK-GNYAGTLAGALQYHFDQLSDVAGQ 141 Query: 61 ------HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 HRLD TSG++VVA +L QF +R+ +K+Y A VWG +D Sbjct: 142 YRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYID-T 200 Query: 115 LICDWPN-RPKQKVCYETG--KPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLA 170 +C P R K VC E G + A T YEV+E Y A R LKP TGR+HQLRVHM Sbjct: 201 FMCVHPRAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVR--LKPRTGRTHQLRVHMQH 258 Query: 171 LGHPILGDRFY-------------------ASPEARAMAPRLLLHAEMLTITHPAYGNSM 211 +GH I+ DR Y A E+ + R LHA L HP G M Sbjct: 259 IGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPM 318 Query: 212 TFKAP 216 F+AP Sbjct: 319 KFEAP 323 >UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XS67_9CAUL Length = 350 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 16/213 (7%) Query: 15 VILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 +++Y+DD ++ +NKP GL G + H D +++ + VHRLD TSGV+++ Sbjct: 112 MVIYEDDLVIALNKPWGLAVQGGTKTTRHVDRLLSAWGEGMERPRLVHRLDRDTSGVLLL 171 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL----ICDW----PNRPKQ 125 A + L F R+ KK Y A V G P PA+G + + L I D+ P PK Sbjct: 172 GKGPEAAKRLAGAFARRQAKKTYWAIVMGLPKPADGQISVHLKKSGINDYEIMRPADPKD 231 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +PA+T Y V+ +AA + + L+P TGR+HQLR HM A+GHPILGD Y Sbjct: 232 PGA----EPAETAYAVISHAAQRASWMALRPFTGRTHQLRAHMKAIGHPILGDPKYGDDA 287 Query: 186 ARAMAP--RLLLHAEMLTITHPAYGNSMTFKAP 216 + ++ +L LHA + + HPA G ++ +AP Sbjct: 288 STQLSGPLKLQLHARRIELDHPA-GGTLVVEAP 319 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 16/216 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-----------QAESVHR 62 L L++D I+VVNKP+G++ PG +++ + +P + VHR Sbjct: 81 LDFLHEDQWIVVVNKPAGMVVHPG-AGNSSGTLLNALLHHFPSLTDTHCDPPLRGGIVHR 139 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG IVVA +K A L+++FR R +K+Y+A G + +G + LP+ +R Sbjct: 140 LDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATGIITETQGRITLPIGRHPIHR 199 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 + V E +PA+T + V+ A +T V LK TGR+HQ+RVH ALGHP+ GDR Y Sbjct: 200 KRMAVNTERARPAETLWRVLGQMAGHTLLDVGLK--TGRTHQIRVHFRALGHPLAGDRVY 257 Query: 182 A-SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + A APR +LHA L HP G + F AP Sbjct: 258 GFRGKQSARAPRQMLHAGTLGFRHPWSGKRVEFTAP 293 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 13/211 (6%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVIV 72 I+Y+DDH++++NKPSG +V G H ++ ++ PQA E VHR+D TSG+++ Sbjct: 97 IVYEDDHLLILNKPSGT-AVHGGSGLHFGAIEA-LRALRPQARFLELVHRIDRDTSGILL 154 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 VA ++A R L+ QFRE+ +K Y A V GH +V+ PL+ + N + G Sbjct: 155 VAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVR--VNPNG 212 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI-----LGDRFYASPEAR 187 KP++T + ++E A+ T V P+TGR+HQ+RVH +GHPI GDR + + A+ Sbjct: 213 KPSETRFRILEKFAEATL-VQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQ 271 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL LHA + HPA + AP + Sbjct: 272 FGIERLFLHAANIQFVHPASEKKLEIHAPLE 302 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 112/215 (52%), Gaps = 14/215 (6%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71 VILY+DDHI+V+NKPSG G V+ ++ P+A E VHRLD TSGV+ Sbjct: 94 VILYEDDHILVLNKPSGTAVHGG--SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYE 130 +VA ++A R L Q RE+ +K Y+A V G V PL+ + ++ V + Sbjct: 152 LVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQ 211 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS------- 183 GKP++T ++V E A T V P+TGR+HQ+RVH GHPI D Y Sbjct: 212 EGKPSETRFKVEERYAFATL-VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQL 270 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 EA RL LHA L THP G M +AP D Sbjct: 271 TEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMD 305 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 PQ+ L ILY+D+ ++V+NK SG++ P V + + V Sbjct: 72 PQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIV 131 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG +V+A A + L QF R +K+Y+A V G PS + G V + Sbjct: 132 HRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPV 191 Query: 121 NRPKQKVCY-ETGKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALGHPILGD 178 NR K V +GK A T+Y+++ + +VL + TGR+HQ+RVHML LGHP++GD Sbjct: 192 NRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRVHMLYLGHPLIGD 251 Query: 179 RFYASPEARAMAP-RLLLHAEMLTITHPAYGNSMTFKAP 216 YA P + P RL+LHA L HP G M F+AP Sbjct: 252 PIYAKPARQKAKPGRLMLHAWRLGFDHPRTGKRMDFEAP 290 >UniRef50_Q1DCE5 Pseudouridine synthase, RluA family n=2 Tax=Cystobacterineae RepID=Q1DCE5_MYXXD Length = 310 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 115/216 (53%), Gaps = 15/216 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP--GRLEEH-KDSVMTRIQRDYPQAESVHRLDM 65 P P L +LY+D ++ V+KP+G+ + P GR+ + D V ++ R A VHRLD Sbjct: 77 PPAPELRVLYEDADVIAVDKPAGVSAQPTEGRVGDSLVDLVGAKLGR---PAGLVHRLDR 133 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV V T A L +FRE +K+YVA G P G VDLPL D P+RP + Sbjct: 134 ETSGVTVFGKTAEATSALAAEFREGRARKRYVA-ATGPGLPPSGTVDLPLSKD-PSRPGR 191 Query: 126 --KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 G PA T++ + V L P TGR+HQLR H+ ALG PILGD Y Sbjct: 192 WRATRAANGVPALTDFHTLSSGPAFCV-VELLPHTGRTHQLRAHLTALGAPILGDARYGG 250 Query: 184 PEARA---MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 ARA APR LLHA+ L + HP G + +AP Sbjct: 251 -AARAEGVEAPRCLLHAQALELGHPRTGKLLRIEAP 285 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 25/221 (11%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMATS 68 I+Y+D+ +++VNK +GL+ P H + Y Q + VHRLD TS Sbjct: 87 IVYEDEALLIVNKAAGLIVHP--THGHYTGTLANGVVYYWQEKGEKFRFRPVHRLDQETS 144 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G+I +A + + Q E K+Y A V G P+ EG +D P+ D P P +++ Sbjct: 145 GLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPIDRD-PAEPHRRIV 203 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE--- 185 +G P+ T Y+V E D ARV L+ TGR+HQ+RVHM ++GHP++GD+FY P Sbjct: 204 TPSGYPSLTYYKVAEAYGDG-ARVELRLGTGRTHQIRVHMTSIGHPLIGDKFYGMPGLAE 262 Query: 186 ----ARAMAPRL-------LLHAEMLTITHPAYGNSMTFKA 215 AR RL LHA L HP G ++TFK+ Sbjct: 263 LPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKS 303 >UniRef50_Q0IBH1 Pseudouridine synthase n=11 Tax=Cyanobacteria RepID=Q0IBH1_SYNS3 Length = 220 Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 2/193 (1%) Query: 23 IMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERE 82 +VV KPSGLLS PG + DS++TR+Q P+ VHRLD TSG++++A + + Sbjct: 25 FLVVEKPSGLLSQPGLGDSQSDSLITRLQAVRPELRLVHRLDRDTSGLLLLARDPESLKV 84 Query: 83 LKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVV 142 L F ER+ K Y A V GHP G V LPL P + G+ T + Sbjct: 85 LGGLFAERKVHKFYAADVHGHPKSRSGAVRLPL-ARLSAHPPRYGPRRDGRSCLTLWRCA 143 Query: 143 EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTI 202 + +D + R+ L P TGRSHQLR H+ A+G PI+GD YAS + RL LHA L+ Sbjct: 144 QMGSDRS-RLWLAPRTGRSHQLRAHLAAIGLPIIGDPIYASSGLGSPGERLHLHALGLSF 202 Query: 203 THPAYGNSMTFKA 215 + P G + ++ Sbjct: 203 SDPFSGQRIRVRS 215 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 17/224 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLS--VPGRLEE--------HKDSVMTRIQRDYPQAE 58 P E L I+Y+D I+V+NK +GL+ PG E + D++ T + P Sbjct: 77 PVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTISGVNRPGI- 135 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+V+A + R+L QF++R+ KK Y + G EG +D P+ D Sbjct: 136 -VHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDAPIGRD 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V + K A T ++V+E+ D++ V LK TGR+HQ+RVH +G P++G Sbjct: 195 PHDRKKMAVTRKNSKKAVTYFKVLEFFRDHSYVEVELK--TGRTHQIRVHFSYMGFPVVG 252 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 D Y R A R LLHA L HP + +KA P DF Sbjct: 253 DSIYGKKRNRLQATRQLLHAYRLGFYHPRNDKWVEYKASLPDDF 296 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 23/223 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLDMAT 67 L ++Y+DD ++V+NKP+GL+ P +V+ + YPQA VHRLD T Sbjct: 116 LDVVYEDDTLLVINKPAGLVVHPA-AGNWSGTVLNGLLHRYPQAAGLPRAGIVHRLDKET 174 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++VVA T A+ +L RQ + R K+ Y+A VWG +P G +D P+ D +R + + Sbjct: 175 SGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE-TPEAGTIDAPIGRDPRDRTRMAI 233 Query: 128 C-YETGKPAQTEYEVVEYAADNTARVVLKPI---TGRSHQLRVHMLALGHPILGDRFYAS 183 +GKPA+T ++ ++ A+V L TGR+HQ+RVH + GHP+LGD Y Sbjct: 234 IETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHPLLGDPVYTR 293 Query: 184 PEARA-----MAP------RLLLHAEMLTITHPAYGNSMTFKA 215 R AP R LHA L + HPA G S+ + A Sbjct: 294 NFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHA 336 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 112/218 (51%), Gaps = 13/218 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------- 59 P+E L I+Y+D+ ++VVNK +G++ P E + D + + Q S Sbjct: 77 PEEIPLDIVYEDEDLVVVNKKAGMVVHPA--EGNWDGTLVNALLYHCQNLSGIGGVLRPG 134 Query: 60 -VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++VVA A + L Q +E++ ++Y V G+ EG++DLP I Sbjct: 135 IVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLP-IGR 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 P ++ GK AQT Y+V+E + K +TGR+HQ+RVH LGHP+LGD Sbjct: 194 HPRDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRVHFSYLGHPVLGD 253 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y R +LHA L+ HP G + F AP Sbjct: 254 PKYGHQNNPFGVKRQMLHAIKLSFIHPRSGELLEFTAP 291 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 120/243 (49%), Gaps = 36/243 (14%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----DYPQAE------ 58 P+E L IL++D+H++V+NKP+G++ PG H V + D P Sbjct: 82 PEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGGLSGIGG 141 Query: 59 -----SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 VHRLD TSG++V A A L RQF +R ++Y+A G P PA+G ++ Sbjct: 142 VIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPAQGRIEG 201 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 + +R K V + G+ A T Y+V+E A + + +GR+HQ+RVHM +GH Sbjct: 202 AIGRHPIHRTKMAVVEQGGRAAATRYKVLE-PLGQFALIRCRLESGRTHQIRVHMTHIGH 260 Query: 174 PILGDRFYASPEARAMAP---------------RLLLHAEMLTITHPAYGNSMTFKA--P 216 P++GD Y A+ AP R LHA LT HP G M+FK P Sbjct: 261 PLVGDPLYG---AQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKRPPP 317 Query: 217 ADF 219 ADF Sbjct: 318 ADF 320 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 14/223 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYPQAE 58 P+ L I+++DD ++VVNKPSG++ P + L H +S+ + + Sbjct: 75 PENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++V+A ++L Q E + ++Y+A V GH + G+VD PL Sbjct: 135 LVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRH 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR K +V + GK A T +EV++ +D + V + TGR+HQ+R HM + HPI+ D Sbjct: 195 QTNRLK-RVVEKGGKNAITHFEVLDSFSD-YSLVSCRLETGRTHQIRAHMEFIKHPIVND 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y A LHA L+ THP G ++ F+ P +F Sbjct: 253 PLYHPKGKNATEFGQFLHARTLSFTHPLTGETLNFQVEPPKEF 295 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 114/222 (51%), Gaps = 22/222 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPG------------RLEEHKDSVMTRIQRDYPQ 56 PQE L ++Y+D ++V+NKP GL+ PG H S + + R Sbjct: 75 PQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLR---- 130 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG+IV A + L +Q E+ +QY A V G + G +D P+ Sbjct: 131 PGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIG 190 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 D +R K V + +PA T ++VVE DN V + TGR+HQ+RVHM +G PI+ Sbjct: 191 RDEKDRQKMAVTEKNSRPAITHFKVVE-RFDNYTLVSCRLETGRTHQIRVHMQYIGFPIV 249 Query: 177 GDRFYASPEARAMAPR--LLLHAEMLTITHPAYGNSMTFKAP 216 GD Y+ R P +LHA L+ THP+ G MTF+AP Sbjct: 250 GDPKYS---LRKTLPTQGQMLHAYQLSFTHPSTGERMTFEAP 288 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 25/231 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLL--SVPGRLEE--------HKDSVMTRIQRDYPQAE 58 PQ+ L ++Y+D+ ++V++KP+G++ PG +E H + I + Sbjct: 260 PQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIG-GVKRPG 318 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++V A T AA R L QF ++ Y A VWG PSP +G ++ + + Sbjct: 319 IVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRN 378 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V GKPA T Y V++ +A + V + TGR+HQ+RVHM GHP++G Sbjct: 379 PNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTTQGHPLVG 438 Query: 178 DRFYAS----------PEARAMA---PRLLLHAEMLTITHPAYGNSMTFKA 215 D Y PE + PR LHA +L +HP G + F++ Sbjct: 439 DPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFES 489 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 21/228 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP-----------GRLEEHKD-SVMTRIQRDYPQ 56 P++ L I+Y+D I+V+NK G+++ P G L KD + + R Sbjct: 74 PEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLR---- 129 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSGV+V+A A + L +QF++R +K Y+ V G P EG +++ + Sbjct: 130 PGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIA 189 Query: 117 CDWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 + R K V E GKPA T Y+VV D A V P TGR+HQ+RVHM +GHP+ Sbjct: 190 RNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIRVHMKYIGHPL 249 Query: 176 LGDRFYASPEARAM--APRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 +GD Y + + R +LHA L+ HP G + F K P DF Sbjct: 250 MGDEVYGRAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDF 297 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 25/226 (11%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---------VHRLD 64 L I+YQDD I V+NKP+G+++ P + K ++ ++ +PQ + VHRLD Sbjct: 39 LDIIYQDDRIAVINKPAGMITHPAK-GHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLD 97 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSGVIV+A AA LK QF++R +K+Y A V G P L++ P+ R + Sbjct: 98 RDTSGVIVIAKDDAAHEFLKTQFQDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRER 157 Query: 125 QKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + + GK AQT YEV+E A L P TGR+HQ+RVH++ GHP+L D Y Sbjct: 158 MAIRRGDDEGKDAQTFYEVLERYQGFAAIKAL-PKTGRTHQIRVHLMHAGHPVLCDPLYG 216 Query: 183 S------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 S + + R LHA + I HP G F AP Sbjct: 217 SRRFLSLGELQHDDDRTVLLNRTALHAHRIAIAHPDDGEIREFIAP 262 >UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057L6_BUCCC Length = 317 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 8/210 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 IL++D+ +++ NKP G G + + +I+ D E VHR+D TSG+++++ Sbjct: 94 ILFEDNDLIIFNKPYGFAVHGGSGISYGVIEIFRKIRSDLKFLELVHRIDKETSGILILS 153 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC-YETGK 133 ++ +++ RE++ K+Y+A + G+ S +V LPL+ + K+KVC ++ GK Sbjct: 154 KKRSILKKMHINLREKKIYKEYLAILHGYWSKKNKIVKLPLLKKKNIKQKKKVCVHKEGK 213 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA--- 190 AQT +E+ +Y +N V + PITGR+HQ+RVH GHPI+ D Y E + Sbjct: 214 LAQTNFEIKKY-LNNKTLVKIIPITGRTHQIRVHTAQFGHPIVFDNRYGKIEKKKKKIIK 272 Query: 191 --PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RLLLHA ++ HP + + AP D Sbjct: 273 KNSRLLLHAFKVSFLHPRNNENFSITAPLD 302 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 18/226 (7%) Query: 4 ENYNP--PQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQ 51 E NP P+ L I+Y+DD IMV+NKP GL+ P L H D++ T Sbjct: 64 EETNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLST--H 121 Query: 52 RDYPQAESV-HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL 110 D P + HR+D TSG+I+VA T A + L + + + K++Y+A V G +G+ Sbjct: 122 NDDPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGV 181 Query: 111 VDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA 170 +D P I P + TGKPA T +EV+ D+T + K TGR+HQ+RVH+ Sbjct: 182 IDAP-IARHPKIRTKMAVVATGKPAITHFEVMRTFRDHTL-LHCKLETGRTHQIRVHLAY 239 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + HP+ GD Y + +A+ + LLHA L HP M +AP Sbjct: 240 IKHPVTGDPLYGT-KAKILKDGQLLHAFRLEFVHPITKKVMMLEAP 284 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 20/214 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMA 66 L I+YQD ++V+NK G+ PG H + DY + + VHRLD Sbjct: 84 LDIVYQDQDVLVLNKAPGVAVHPG--PGHYSDTIGNFLMDYYRKQGILADFHPVHRLDRG 141 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++VAL A+ LK Q ++ Y+A G P+P G++D P+ R + Sbjct: 142 TSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPI-----GRLEGS 196 Query: 127 VCYETGKP----AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 V T +P A T Y + D A V L+ TGR+HQ+RVHM LGHP+ GD Y Sbjct: 197 VLARTVRPDGQRAVTHYRTLRTVNDR-ALVRLELETGRTHQIRVHMAHLGHPLTGDFLYG 255 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + E +++ PR LHA L+ THP G +M F AP Sbjct: 256 T-EDQSLIPRPALHAAELSFTHPITGKTMAFTAP 288 >UniRef50_B7G8W7 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G8W7_PHATR Length = 235 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 117/241 (48%), Gaps = 41/241 (17%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLDMAT 67 L I+Y D I+VVNKP +L+VPG + V+ + + +A VHRLDMAT Sbjct: 1 LQIVYHDSDIVVVNKPPDVLTVPG--IHSRSCVLDLVHDRFGEAVQDKAHMIVHRLDMAT 58 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG+++ T + ++ FR+R K Y A + GH +G +DLPL D P ++ Sbjct: 59 SGIVLFGRTLNITKRMQAIFRDRLVLKTYQALLMGHFPIDKGTIDLPLQRDHEYPPFMRI 118 Query: 128 CYETG------------------------KPAQTEYEVVEYAADNT---ARVVLKPITGR 160 T KP+QT + V+ + N R+ L P+TGR Sbjct: 119 STPTSEADAVQAVKDLQQHGWKKLIRKKPKPSQTSFRVLARSFRNGLPFTRMELVPVTGR 178 Query: 161 SHQLRVHMLALGHPILGDRFYAS--PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +HQLRVH ALG+PI+GD Y P +AM LHA +L HP G + F+A D Sbjct: 179 THQLRVHCAALGYPIVGDPTYDEYVPNEKAMC----LHAALLQCEHPTTGMPIVFEASPD 234 Query: 219 F 219 F Sbjct: 235 F 235 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 22/232 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------V 60 P+E L I+Y D I V+NKP+GL + P +++ R+ +P+ V Sbjct: 89 PEELPLEIIYNDGKIAVINKPAGLTTHPAP-SCPTGTLVHRMIHHFPEIRDMDEWRPGIV 147 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+I VAL + + F +RE K Y+A V G P G +D P+ Sbjct: 148 HRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREFGEIDQPMGRHPV 207 Query: 121 NRPKQKVCYETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 ++ K V + G+ A++EYEV+ A + V +K TGR+HQ+RVHM +GHP++GD+ Sbjct: 208 HKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQIRVHMAHIGHPLVGDQ 267 Query: 180 FYAS----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y S P+ +A R +LHA L+ THP ++F P DF Sbjct: 268 VYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFTQAPPEDF 319 >UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacteria RepID=Q2G4F0_NOVAD Length = 436 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 10/210 (4%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTR-IQRDYPQAESVHRLDMATSGVIV 72 ++L +D +V+NKP GL + G EH D ++ + + VHRLD TSGV++ Sbjct: 103 MVLEKDRAAIVLNKPPGLATQGGSGTHEHVDGLLDAYVNEGEARPRLVHRLDKDTSGVLL 162 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE-- 130 +A T + ++F R +K Y A V G P +GL++LPL P +K+ + Sbjct: 163 IARTPGSAAFFSKRFSCRSARKIYWALVVGVPDVKDGLIELPL-AKQPGTGGEKMMVDES 221 Query: 131 -TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA--- 186 G+ A++ Y V+ A + A V L+P+TGR+HQLRVHM A+GHPI+GD Y A Sbjct: 222 GQGQSARSRYRVISRAGNAAAWVELQPLTGRTHQLRVHMAAIGHPIVGDGKYGGQAAFLT 281 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +++ ++ LHA L I HP G+ + AP Sbjct: 282 GSISRKMHLHARRLRIEHP-EGDMIDVTAP 310 >UniRef50_B5Y592 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y592_PHATR Length = 175 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 102/175 (58%), Gaps = 7/175 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPG--RLEEHKDSVMTRIQRDYPQAES--VHRLDMATSG 69 L I+++D+HI+VV+KPSG+L+VP + +V Q + VHRL M TSG Sbjct: 1 LKIVHEDEHIIVVDKPSGVLTVPSDKNVPSLAQAVFDHCQPTEVTLDQMVVHRLGMDTSG 60 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 +IV+A T R++ FR R+ +QY A V GH GL+ LPL+ D+ + P + Sbjct: 61 LIVLAKTMDTVRQMNALFRTRKITRQYEALVVGHLPQHGGLISLPLMRDYEHPPYMRKLL 120 Query: 130 ETGKPAQTEYEVVEYA-ADNT--ARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 E K + T+YEVV D T +RV L I+GR+HQL VH+ A GHPI+GD Y Sbjct: 121 EMPKESLTKYEVVNREDMDGTPVSRVALTSISGRTHQLNVHLAAFGHPIVGDSVY 175 >UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae RepID=B8GX34_CAUCN Length = 331 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 15/205 (7%) Query: 15 VILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 ++LY+D+ ++ +NKP+GL G + +H D +++ + VHRLD TSGV+++ Sbjct: 92 LVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRPRLVHRLDRDTSGVLLL 151 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL----ICDW----PNRPKQ 125 T +A L F +R+ +K Y A V G+P P EG+++L L + D P +PK Sbjct: 152 GKTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKRGVGDRELVVPAQPKD 211 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +PA+TE+ + A + L+P TGR+HQLR HM A+GHPILGD Y + Sbjct: 212 ----PDAQPAETEFVTISRAGPRVTWMALRPHTGRTHQLRAHMKAMGHPILGDPKYGDEK 267 Query: 186 ARAMAP--RLLLHAEMLTITHPAYG 208 + ++ +L LHA + + HP+ G Sbjct: 268 SAPLSEGLKLQLHARSILLPHPSAG 292 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 17/220 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLS--VPGRLEEHK-DSVMTR--IQRDYPQAESVHRL 63 P++ L ++Y+D+H++VVNKP+GL+ PG + ++ R R+ P+A VHRL Sbjct: 120 PEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHRL 179 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVA---RVWGHPSPAEGLVDLPLICDWP 120 D TSG++VVA ++AA L R+ +QY+A + WG E VD P+ D Sbjct: 180 DKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHRE--VDAPIGRDPR 237 Query: 121 NRPKQKV---CYETGKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALGHPIL 176 NR + V GK A+T+ +++ A + +V + TGR+HQ+RVHM +LGHP++ Sbjct: 238 NRLRMAVVDLAQHAGKTARTDIDLL--AGNEEVSLVRCTLHTGRTHQIRVHMASLGHPLV 295 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 D Y EA MA R LHA L THP G ++ +AP Sbjct: 296 ADAVYGGKEAGGMA-RQALHAFRLAFTHPMTGQALVLRAP 334 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 18/226 (7%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESV 60 + P+E L I+++DD ++V++K +GL+ PG + +++ + PQ A V Sbjct: 100 SAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGS-GNWRGTLLNGLLHHAPQLARVPRAGIV 158 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T+G++VVA T A+ +L RQ + R K+ Y A V G A G+VD P I P Sbjct: 159 HRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGA-GIVDAP-IGRHP 216 Query: 121 NRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + G+PA+T Y V+E + A L+ TGR+HQ+RVHM ++ HP++GD Sbjct: 217 TVRTRMAVVSGGRPARTHYRVLERFVACTLIECALE--TGRTHQIRVHMTSIAHPLVGDP 274 Query: 180 FYASPEAR----AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y +R A+ PR LHA L + HPA G +M +++ PAD Sbjct: 275 IYGGGASRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADM 320 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 113/213 (53%), Gaps = 16/213 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKD-SVMTRIQRDYPQAES---------VHRL 63 L I++QD ++++NKP GL P H D +++ + P+ E VHRL Sbjct: 80 LEIIFQDKDLLLINKPPGLTVHPA--PGHPDHTLINGVLALEPKMEDFDDPLRPGIVHRL 137 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG+++VA + L QF+ER +K Y+ V G PAEG ++ PL D NR Sbjct: 138 DKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQNRQ 197 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 K V G+ A+T Y+V+ Y + + +K TGR+HQ+RVH A+GHP+ GD Y Sbjct: 198 KIAVV-SNGRHARTGYKVLRY-IQGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAIYGQ 255 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 E R LHA L+ T P+ G ++ F +P Sbjct: 256 KE--TWLKRQFLHAHRLSFTLPSNGQTVEFTSP 286 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 119/231 (51%), Gaps = 17/231 (7%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVP------GRLEE---HKDSVMTRIQRDY 54 EN P P L ILY+D+ ++V+NKP+GL+ P G L H + + +D Sbjct: 76 ENILPENIP-LNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDP 134 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSGV+VVA + L ++F+ER+ K Y+A V G EG ++LP Sbjct: 135 NRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLP 194 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 L R K+ V Y GK A TEY+ ++ D V ++ TGR+HQ+RVH +G+P Sbjct: 195 LGRHPILRHKRAVVY-NGKEAITEYKTLKEFGDLATLVWIRLRTGRTHQIRVHFKYIGNP 253 Query: 175 ILGDRFYASP--EARAMAP--RLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 ++GD Y E P R +LHA L HP M F AP DF Sbjct: 254 LIGDSLYGKNKIEKNLQIPVGRQMLHALKLGFYHPKTKEWMEFLAPLPDDF 304 >UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D n=23 Tax=Borrelia RepID=RLUD_BORBU Length = 326 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 19/208 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPG----------RLEEHKDSVMTRIQRDYPQAE 58 P + I+Y+D +++V+NKP G+LS PG L H S+ + + Sbjct: 79 PSNIPIAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPG 138 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV++ A + R L +QF+++ K Y+A V G+ + G ++ + D Sbjct: 139 IVHRLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIVKGNFNSFFGSIESFIDRD 198 Query: 119 WPNRPKQKVCYETGKPAQTEYEVV----EYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 NR K V + GK A TEY ++ EY+ + LKP TGR+HQLRVHM L P Sbjct: 199 KHNRKKFSVSKDRGKKALTEYRLLLNFGEYSL-----LALKPKTGRTHQLRVHMKYLNFP 253 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTI 202 ILGD Y + L+LH+ L I Sbjct: 254 ILGDEVYGRVDGSLKKITLMLHSYKLEI 281 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 33/242 (13%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSV---------MTRIQRDYPQAES 59 P+E + ++Y+DD +MVVNK +G++ PG H + M + P+ Sbjct: 126 PEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEFDANDPEVGL 185 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG++VVA T A+ L +QF + + Y A VWG+ EG ++ + D Sbjct: 186 VHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGRIEGNIGRDP 245 Query: 120 PNRPKQKVC---YETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 NR + KV GK A T Y+V+E + + VL+ TGR+HQ+R HM +GHP+ Sbjct: 246 KNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLE--TGRTHQIRAHMKHIGHPL 303 Query: 176 LGDRFYASPE----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PA 217 D Y E + PR LHA+ L HP M F + P Sbjct: 304 FMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMDFDSEWPN 363 Query: 218 DF 219 DF Sbjct: 364 DF 365 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 114/241 (47%), Gaps = 41/241 (17%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------------VH 61 L IL++DDHI+VVNKP+GL+ PG V I Y +S VH Sbjct: 80 LHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALI---YHCGDSLSGIGGVRRPGIVH 136 Query: 62 RLDMATSGVIVVALTKAAERELKRQF----REREPKKQYVARVWGHPSPAEGLVDLPLIC 117 RLD TSGVIVVA A + L QF R ++Y A +WG P+ G++ L Sbjct: 137 RLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNIGVITASLGR 196 Query: 118 DWPNRPKQKVCYE---TGKPAQTEYEVVEYAADNTARVVLKPI------TGRSHQLRVHM 168 +R KQ V + + A T + V+E ++ + TGR+HQ+RVHM Sbjct: 197 ARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLLECRLETGRTHQIRVHM 256 Query: 169 LALGHPILGDRFYASP-------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 +GHP++GD Y + EA + R LHA LT HPA GN M+F A Sbjct: 257 AHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHPAKGNIMSFSA 316 Query: 216 P 216 P Sbjct: 317 P 317 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 16/222 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYPQAE 58 P+ L ILY+D+ ++++NKP G++ P L H ++ I + + Sbjct: 94 PENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGEL-RPG 152 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+DM T+GVI+ + R + Q +E K++Y A V+G EG ++ + Sbjct: 153 IVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGSIGRS 212 Query: 119 WPNRPKQKVCYETGKPAQTEYEVV-EYAA---DNTARVVLKPITGRSHQLRVHMLALGHP 174 +R K V + GKPA T Y V+ Y + +N A + + TGR+HQ+RVHM ++GHP Sbjct: 213 KTDRKKMAVIPD-GKPAVTHYRVIRNYTSPNGNNFAHIECELETGRTHQIRVHMTSIGHP 271 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +LGD Y + + LHAEML HP G M F AP Sbjct: 272 LLGDEIYGAAKNPFKLDGQALHAEMLGFVHPRTGEYMEFHAP 313 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 16/213 (7%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---------VHRLDMA 66 ++Y+DD ++VVNKP+G++ PG +++ + YP+ VHRLD+ Sbjct: 118 VVYEDDDVIVVNKPAGVVVHPG-AGRPDGTLVNGLMFRYPEIGRIGDSVRPGIVHRLDVG 176 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++VVA + AA R L F+ E K+Y+ G EG VD P+ D NR K Sbjct: 177 TSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVDAPIGRDPRNRLKMC 236 Query: 127 VCYETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA--S 183 V ++ G+ A T+Y+V+ A N RV L TGR+HQ+RVHM ALG + GD Y Sbjct: 237 VSWD-GRDAVTDYKVLWTRARCNLIRVRLH--TGRTHQIRVHMRALGCSLDGDTLYGPKD 293 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 P + R+ LH+ L HP G + F+AP Sbjct: 294 PAQHILKDRVFLHSWRLGFRHPVSGERLEFRAP 326 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 30/229 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPG---------RLEEHKDSVMTRIQRDYPQAESV 60 Q+ + ++Y+D+ I++VNKP L++ PG H DS + + R A V Sbjct: 76 QDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDR----AGIV 131 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++VVA ++ A++ L RQ + ++Y A V+GH G VD P+ D Sbjct: 132 HRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISG-GTVDKPIGRDPK 190 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R +Q V E+GK A T Y V+E A +T +V+L+ TGR+HQ+RVH+ +GHP++ D Sbjct: 191 DRIRQTVT-ESGKDALTHYRVIERFAHHTHVKVMLE--TGRTHQIRVHLSFIGHPLIADP 247 Query: 180 FYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y + R LHA+ LT+ HP M++K P Sbjct: 248 MYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVP 296 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 13/213 (6%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71 +I+Y+DD+++ +NKP+G+ + G K V+ ++ P+A E VHRLD TSGV+ Sbjct: 93 IIIYEDDYLLALNKPTGVAAHGG--SGLKFGVIEGLRALRPKAQFLELVHRLDRETSGVL 150 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-- 129 +VA + A L Q R + KK+Y+A V G + +V +PL +V Y Sbjct: 151 LVAKRRTALVYLHEQLRLQNMKKEYLALVHGRWNVNLQIVSVPLFKKNTLLNSSRVVYID 210 Query: 130 -ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-- 186 E GK + T +++ EY + + +KPITGR+HQ+RVH HPI+GD Y ++ Sbjct: 211 SENGKFSTTHFQIKEYFDNVATFLAIKPITGRTHQIRVHTQYASHPIVGDNRYGDYQSNT 270 Query: 187 ---RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 R RL LHA +L HP AP Sbjct: 271 RFKRFGFNRLFLHASILRFIHPKTKKKFHIHAP 303 >UniRef50_B8BQ07 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ07_THAPS Length = 246 Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 113/233 (48%), Gaps = 26/233 (11%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMA 66 N P + +LY DD I+V++KP+ L SVPG D+ + Q VHRLD Sbjct: 14 NVPPHLTIRVLYSDDDIVVIDKPANLRSVPGHASNSPDA--DDGSKSKYQLHVVHRLDCQ 71 Query: 67 TSGVIVVALTKAAERELKRQFRERE-PKKQYVARVWGHP-----SPAEGLVDLPLICDWP 120 TSG++VVA A +L +RER+ +K Y+A P +EG +DLPL Sbjct: 72 TSGIMVVARNSTAASKLCHAWRERDIVQKTYLAYCQRWPPYHDEQLSEGTIDLPLAASRT 131 Query: 121 NRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R K +V + GKP ++E VE DN + LKPITGR+HQLR+H +G I+GD Sbjct: 132 ERIKWEVRALEDGGKPLKSEL-TVERDNDNGVVLELKPITGRTHQLRIHCATIGSGIVGD 190 Query: 179 RFYASPEARAMAPR---------------LLLHAEMLTITHPAYGNSMTFKAP 216 Y + L LHA L HP+ G+ +TF +P Sbjct: 191 SLYGDSPVEWFGDKPQHGQQTISQSDTQTLRLHAHKLVFPHPSTGSEVTFVSP 243 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 13/208 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-----VHRLDMATS 68 L ILY+DD ++ V+KP GL ++P R D +R A VHRLD S Sbjct: 3 LPILYEDDDLLAVHKPEGLAAIPER-----DPSRPSARRLLEAARGERLWVVHRLDKEAS 57 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 GV++ A A R + F +R+ +K Y A V G P +G + P+ R V Sbjct: 58 GVLLFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPIRMYGSGR--MGVD 115 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 E GKP++T Y V+EY + + + P+TGR HQ+RVH +GHPI+GD Y + Sbjct: 116 PERGKPSETRYRVLEYLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDPRYGDRSVQQ 175 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 PRL+LHA + HP G + AP Sbjct: 176 RYPRLMLHALSIRFRHPN-GQELEIVAP 202 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 22/229 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP------GRL-------------EEHKDSVMTR 49 P+ L ILY+D+ ++V++KP GL+ P G L E+ K Sbjct: 90 PENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEE 149 Query: 50 IQRDYP-QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAE 108 + + P +A VHRLD TSGV+VV T++ +L QF++R K+Y+A V G Sbjct: 150 EEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKR 209 Query: 109 GLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM 168 G ++ P+ +R K+ + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 210 GEINAPIGRSTHDR-KKFTVRQDGKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF 268 Query: 169 LALGHPILGDRFYASPEARAMA-PRLLLHAEMLTITHPAYGNSMTFKAP 216 LG P+LGD Y S PR +LHA L+ HP+ + M F+AP Sbjct: 269 RYLGFPLLGDAVYGSKGTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAP 317 >UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepID=B5YAZ5_DICT6 Length = 226 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 17/217 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----------VHRL 63 L ++Y+D+H++VVNKP+G+L V G + K + + I + Y + + VHRL Sbjct: 7 LEVIYEDNHLLVVNKPAGIL-VQGDIT--KSTTLLEISKAYIKEKYKKPGNVFLAIVHRL 63 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D SGV++ A + L FRER+ +K+Y+A G +G + L+ R Sbjct: 64 DKPVSGVVIFARNSKSAGRLSEAFRERKVEKEYIALCKGIFKVKKGTISESLLWVEKERK 123 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + + K A T YEV+E N + V L P TGR HQLR H+ +GHPILGD Y Sbjct: 124 ARVSQDDKSKNAITHYEVLE-EFKNLSLVRLIPETGRKHQLRAHLSYIGHPILGDEKYGG 182 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA-DF 219 R R+ LH + + + HP + M F+A DF Sbjct: 183 --GRIFKDRIFLHCKKMAVPHPVRKDIMEFEAKIPDF 217 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 109/219 (49%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 PQ+ +Y+DD ++V++KP G++ PG V + D + V Sbjct: 90 PQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRPGIV 149 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG +VVA + + R L F+ER+ K Y A V G P EG + P+ Sbjct: 150 HRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGRHSV 209 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPI---TGRSHQLRVHMLALGHPILG 177 +R K + TGK A T ++VVE L + TGR+HQ+RVHM ++G PI G Sbjct: 210 HRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGRTHQIRVHMSSIGCPIAG 269 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 D+ Y S R +LHA L + HP G +M+F AP Sbjct: 270 DQVYGSKRQNPAFARQMLHASRLRLPHPVTGRTMSFTAP 308 >UniRef50_B0T2G2 Pseudouridine synthase n=6 Tax=Caulobacteraceae RepID=B0T2G2_CAUSK Length = 286 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 10/203 (4%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEH--KDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 +++++DD + V+NKP+GL S GR++ H D + +RD P+ +HRLD TSGVI+ Sbjct: 53 LVIHEDDSVFVLNKPAGLSSQGGRIQAHTLDDLLWALARRDRPRPRLIHRLDRDTSGVIL 112 Query: 73 VALTKAAERELKRQFREREPKKQYVARVW-GHPSPAEGLVDLPLICDWPNRPK-QKVC-- 128 A TK A L + + +K Y A V G P P G +D PL + R +VC Sbjct: 113 TARTKPAATFLGKALMGKRFRKTYWAIVTPGAPEPRGGQIDSPLRRESIGREAYMRVCEA 172 Query: 129 -YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP--E 185 + + A++ Y + A + A V L P TGR HQLRVHM ++G PI GD Y Sbjct: 173 DHPDAETARSRYRTLA-ATEGAALVELSPDTGRMHQLRVHMASIGRPIAGDSRYGGALML 231 Query: 186 ARAMAPRLLLHAEMLTITHPAYG 208 A PRL+LHA L HP G Sbjct: 232 GGAPVPRLMLHAANLVFPHPEGG 254 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 26/230 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------QAESVH 61 PQ L I+Y+D+ I+V+NK S ++ PG + ++ +V+ + YP QA V Sbjct: 81 PQNIPLNIIYEDNDILVINKASNMVVHPG-IGHYQGTVLNALLYRYPSILKISKQAGIVQ 139 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G++++A T +A L R F+ R+ K+Y A V+G + G+V+ P+ + Sbjct: 140 RLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRRHFAK 199 Query: 122 RPKQKVCYETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R V Y TGK A T Y VV E+ A + R+ LK TGR+HQ+RVHM + HP++GD+ Sbjct: 200 RTFMSVHY-TGKSAVTYYSVVEEFKAHSRVRINLK--TGRTHQIRVHMAYINHPLVGDQK 256 Query: 181 YASP----EARAMAPRL----------LLHAEMLTITHPAYGNSMTFKAP 216 Y + + M+ L LHA L + HP M + AP Sbjct: 257 YKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAP 306 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 11/212 (5%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--DYPQAESVHRLDMATSGVIVV 73 IL++D+H++VVNKPSG+ G R R + E VHR+D TSG++++ Sbjct: 106 ILFEDEHLLVVNKPSGMAVHGGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGILII 165 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETG 132 + ++A R+L+ Q R R KK Y V GH A VDLPL+ + + +V E+G Sbjct: 166 SKKRSALRKLQEQLRARSWKKYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDESG 225 Query: 133 KPAQTEYEVVE-YAADNTARVVLKP--ITGRSHQLRVHMLALGHPILGDRFYASPE---- 185 A T+++V++ Y + ++ +++ +TGR+HQ+RVH A PI GD Y + E Sbjct: 226 DKACTKFKVIQCYKSSYSSFTLIQAQILTGRTHQIRVHTSANKFPIAGDDRYGNFEMNKQ 285 Query: 186 -ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 AR R+ LHA L + HPA ++ +AP Sbjct: 286 LARQGLKRMFLHAARLQLVHPATNETIVLEAP 317 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 15/220 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI------QRDYPQA 57 E N P P + ILY+DDH+++ NKP+G++ P +++ D+++ + + + Sbjct: 85 EGPNTPM-PSIDILYEDDHLLIANKPAGMMVHP--IKQETDTLVHALAAVLAARGEQTSV 141 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG I+VA + + R RE ++Y+A G S G +D P+ Sbjct: 142 HPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGR 201 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPIL 176 D P ++ E+G PA T YEV + + + T ARV L+ TGR+HQ+RVH +GHP+ Sbjct: 202 D-ARHPTKRRVVESGDPAITHYEVQQTSEEMTLARVWLE--TGRTHQIRVHFAHIGHPLA 258 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 GD Y AR + R LHA L+ HP + +AP Sbjct: 259 GDTMYGG--ARGLLRRQALHASKLSFLHPLLEKEIVVEAP 296 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 21/232 (9%) Query: 3 MENYNPPQEPW---------LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSV--MTRIQ 51 +E Y PP EP + ++Y+DD I+V +KP G+++ P EH V + I+ Sbjct: 68 LEVYLPPVEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKAIR 127 Query: 52 RDYPQAES-----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 106 D S VHRLD TSG++VVA T+AA L Q++ R K+Y A V G P Sbjct: 128 PDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVEP 187 Query: 107 AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLR 165 G +D P+ D R K V G+PA T + V+E + V ++ TGR+HQ+R Sbjct: 188 DSGTIDAPISRDPVERTKMAV-VSWGRPAITHFRVLERFRCATLLDVTIE--TGRTHQIR 244 Query: 166 VHMLALGHPILGDRFYASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAP 216 VH +GHP++GD Y + PR LHA L HP G ++ + P Sbjct: 245 VHCAFIGHPVVGDSQYGGHRPFCVPVPRQFLHARYLRFVHPTTGQAIELETP 296 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 9/213 (4%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AESVHRLDMATSGVIVV 73 +ILY+D++ +++NKPSG+ G + RI R Y + + VHRLD TSGV+++ Sbjct: 94 MILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNRYLDLVHRLDRDTSGVLII 153 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE-TG 132 A ++ R L Q RE++ KK+YVA V G + PL+ + K V + G Sbjct: 154 AKKRSILRNLHEQLREKKIKKKYVALVHGVWPDILKSISKPLLKTSSRKNKNIVKIDPKG 213 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP------EA 186 K + T + + + NT + + PITGR+HQ+RVH+L L +PI+ D Y + Sbjct: 214 KESITHFNIKKKYTKNTL-ISITPITGRTHQIRVHLLHLNYPIVLDAKYGIKKLDYFIKN 272 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + RLLLHAE + HP ++ AP D+ Sbjct: 273 KFNINRLLLHAESINFFHPKRKKNILITAPLDY 305 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 24/222 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLDMAT 67 L ILY DD I+V+NKP+GL+ P + H ++++ + +PQ + VHRLD T Sbjct: 86 LNILYADDDIIVINKPAGLVVHPA-VGNHDNTLLNALLYHFPQTKHLPRSGIVHRLDKDT 144 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG +V+A + A +L RQ + R + Y+A V+G+ + + +DLP+ +R K V Sbjct: 145 SGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDT-IDLPIGRHAKDRLKMAV 203 Query: 128 CYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS--- 183 + GKPA T Y + E + RV L+ TGR+HQ+RVH+ HP++GD+ Y + Sbjct: 204 RPD-GKPAITHYRIEERWQTLTLLRVQLE--TGRTHQIRVHLSHHRHPLVGDKLYGARPF 260 Query: 184 ---------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +A A PR LHA L + HPA M F AP Sbjct: 261 LASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAP 302 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 115/236 (48%), Gaps = 34/236 (14%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGR--------LEEHKDSVMTRIQRDYPQAESVHRL 63 L I+Y+D ++VV KP+GL+ PG L H ++ I + + VHRL Sbjct: 226 LEIVYEDADLIVVMKPAGLVVHPAPGNPDMTLVNALVAHCGETLSGIGGEK-RPGIVHRL 284 Query: 64 DMATSGVIVVALTKAAERELKRQF----REREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 D TSG++VVA T A + L QF R+ + + Y A WG P +G VD + Sbjct: 285 DKETSGLMVVAKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSS 344 Query: 120 PNRPKQKVCYE-----TGKPAQTEYEV-VEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 NR K + G+ A T Y V +YA A V + TGR+HQ+RVHM ALGH Sbjct: 345 HNRSKMATVRDRGEETGGRIAITHYTVKTDYADGLVAEVECRLETGRTHQIRVHMTALGH 404 Query: 174 PILGDRFYA----------SPEARAMAPRL---LLHAEMLTITHPAYGNSMTFKAP 216 P+LGD Y SPEA+A RL LHA L HP G M+F AP Sbjct: 405 PLLGDATYGTGMKSRKSKLSPEAQAALERLNRQALHAHHLGFEHPVAGEKMSFDAP 460 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 110/218 (50%), Gaps = 14/218 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------- 59 PQ+ ++YQD ++VV+KP+GL+ P V + R YP Sbjct: 91 PQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYR-YPDLMELNGVKRPGI 149 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG++VVA A L R F++R K Y+A G EG V LP+ D Sbjct: 150 VHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLR-GEGSVSLPIGRDP 208 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR K+ C G+ A T Y V+ ++ + V + TGR+HQ+RVHM +LGHP++GDR Sbjct: 209 DNR-KRMACVPWGREALTRYRVI-WSRGGYSLVACQIKTGRTHQIRVHMRSLGHPLVGDR 266 Query: 180 FYASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAP 216 Y P R+ LH+ L HP G M+F P Sbjct: 267 IYGGPCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICP 304 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 9/210 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 +LY+DD ++VVNKP+G++ G E + R HRLD TSGV+++A Sbjct: 96 VLYEDDSLLVVNKPAGMVVHGGSGHEAGLIEALKQSRGLDDLRLAHRLDRDTSGVLLMAK 155 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC-YETGKP 134 A R L FRER+ +K Y A + GHP G + L ++ V E GK Sbjct: 156 HLDALRRLTESFRERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDSEEGKA 215 Query: 135 AQTEYEV-VEYAADNT--ARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM-- 189 + T+Y+V +EY A V L P +GR+HQLRV + GHPILGD Y A Sbjct: 216 SVTDYQVMIEYERHGFPYAMVALNPHSGRTHQLRVQLQHEGHPILGDGKYGEKAQLAAYK 275 Query: 190 ---APRLLLHAEMLTITHPAYGNSMTFKAP 216 L+LHA L THP G S+ KAP Sbjct: 276 SLGGKGLMLHAWRLRFTHPVSGKSLECKAP 305 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 17/223 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------- 59 P++ L I+Y+DD I+VVNKP+G++ PG V + RD + Sbjct: 85 PEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTFSAMDDGSSRPG 144 Query: 60 -VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGVI+VA + +L R F R+ +K YVA G + + Sbjct: 145 IVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTITSHIGRS 204 Query: 119 WPNRPKQKVCYET--GKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPI 175 NR K + ++ GK A + Y+V+ A +N A +V LK TGR+HQ+RVHM + HP+ Sbjct: 205 RSNRQKMENTNDSNRGKEAISHYKVL--ADNNGATLVKLKIDTGRTHQIRVHMSGINHPV 262 Query: 176 LGDRFYA--SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +GD+ Y + + R +LHA I HP MTF AP Sbjct: 263 VGDKLYGVRRLDEKESPDRHILHAWRTRIIHPGTQEIMTFTAP 305 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 24/224 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGRLEEHKDSVMTRIQRDYPQAES--------VHRL 63 L +LY D + V++KP GL PG E +++ R+ +P VHRL Sbjct: 91 LRVLYADKELAVLDKPPGLTVHPAPGLPE---GTLVNRLLHHFPGLREMAGERPGIVHRL 147 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG+++VALT+ L F R+ K Y+A V G P G + LP+ D R Sbjct: 148 DKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRDPKYRT 207 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDRFYA 182 K V ++ G+PA + + V A D TA ++ + TGR+HQ+RVHM A+GHPI+GD Y Sbjct: 208 KMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMAAIGHPIIGDAVYG 267 Query: 183 SPEARA----------MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + A +A R +LHA L+ THP +F P Sbjct: 268 PHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCP 311 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 24/230 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP------GRL-------------EEHKDSVMTR 49 P++ L ILY+DD ++V++KP GL+ P G L E+ K Sbjct: 90 PEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEEE 149 Query: 50 IQRDYP-QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAE 108 + + P +A VHRLD TSGV+VV ++ +L QF++R K+Y+A V G Sbjct: 150 EEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKKR 209 Query: 109 GLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM 168 G ++ P+ +R K V + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 210 GEINAPIGRSTHDRKKFAV-RQDGKPSLTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF 268 Query: 169 LALGHPILGDRFYASP--EARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 LG P+LGD Y S E R PR +LHA L HP M F+AP Sbjct: 269 RHLGFPLLGDAVYGSKGMENRNF-PRQMLHAWKLAFQHPRSAAKMEFEAP 317 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 16/210 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMT-------RIQRDYPQAESVH 61 PQ+ L I+++DD+++VVNKP+G++ P + H + + +++ + + VH Sbjct: 84 PQDLPLSIVFEDDYLLVVNKPAGIIVHPTK--GHYTNTLANGIVHHWQVRGERVRFRPVH 141 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++V+A ++L Q + K Y A V+G PSPA+G V P+ + P Sbjct: 142 RLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGTVGAPIDRN-PE 200 Query: 122 RPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 P ++ G P+ T Y+ + ++V LK TGR+HQ+RVHM +G P++GD Sbjct: 201 DPHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRVHMKHIGCPLIGDGM 260 Query: 181 YA-----SPEARAMAPRLLLHAEMLTITHP 205 Y E A R LHAE L +THP Sbjct: 261 YGLQTGKVDEWETAAGRQALHAETLGLTHP 290 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 114/229 (49%), Gaps = 23/229 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP--GRLEEHKDSVMTRIQRDYPQAESV------ 60 PQ+ L ILY+D ++V++KP+GL+ P G + + + RD V Sbjct: 80 PQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPGIV 139 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++VVA T AA + L QF++ + K Y A V+G P G +DLP+ Sbjct: 140 HRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRHPV 199 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K GK A T + + E T + + +TGR+HQ+RVH+ A+GHP++GD Sbjct: 200 ERKKMSTKSRRGKEAATRWRIAERFGVATL-LNVDIVTGRTHQIRVHLAAIGHPVVGDAV 258 Query: 181 YASPEARAMA-------------PRLLLHAEMLTITHPAYGNSMTFKAP 216 Y S + RA R LHA L+ THP + F AP Sbjct: 259 YGSSK-RATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAP 306 >UniRef50_A6FJ39 Pseudouridine synthase n=1 Tax=Moritella sp. PE36 RepID=A6FJ39_9GAMM Length = 238 Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 21/213 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLDMAT 67 L ILY D+ ++V+NKP+GLLSV E+K + +++ A++ VHRLD T Sbjct: 29 LEILYSDNDLVVINKPAGLLSVAS-ANENKQHALAILRKQLSHAKNSVALWPVHRLDRDT 87 Query: 68 SGVIVVALTKAAERELKRQFRE--REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 SGV++ A + RE++ E +K Y+A V G P P++G +D PL D P + + Sbjct: 88 SGVLMFATS----REMRDAVNEGWSGAEKTYLAVVEGSPKPSQGRIDQPLRMD-PEKYQM 142 Query: 126 KVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 V + K A T ++ + + T + +K TGR HQ+RVHM LGH ++GD Y + Sbjct: 143 IVGPHSEAKNAVTHFKTLRTVKELTL-LEVKLETGRQHQIRVHMAWLGHSVIGDPRYGTD 201 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 PR+ LHA L+IT P G +TF+APA Sbjct: 202 -----GPRMGLHALSLSITRPNTGKRLTFEAPA 229 >UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5C8_9BACT Length = 276 Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 114/203 (56%), Gaps = 19/203 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-----AESVHRLDMATS 68 L +LY+ D ++V+NKP+GLLS P + +DSV TR Y A+ VHRLD TS Sbjct: 49 LDVLYRSDSVLVINKPAGLLSQPD--TKGEDSVATRAL-GYASDPAFGAQLVHRLDRNTS 105 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 GV+++AL A R L F+ER K Y+A V G P+ G +D PL+ D P++ +V Sbjct: 106 GVMILALDGQALRSLMVCFKERTANKTYLALVSGQLPPS-GQIDAPLLKD-PDKKLVRVA 163 Query: 129 YETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGD----RFYAS 183 G+ A T + A D + ++ +TGR+HQ+RVHM +GHPILGD F A Sbjct: 164 -SNGERAVTRFR--RLATDGQFSLAEVEILTGRTHQIRVHMNHIGHPILGDAKYGDFSAK 220 Query: 184 PEARAMAPRL-LLHAEMLTITHP 205 P+ R + R +LHA L + P Sbjct: 221 PQVRRLGIRRPMLHATCLVVNSP 243 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 115/232 (49%), Gaps = 27/232 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPG----------RLEEHKDSVMTRIQRDYPQAE 58 P+ L +L++D ++VVNKP GL+ P RL H ++ T + D P Sbjct: 77 PEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLHHFPAIGTVGEPDRPGI- 135 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG +VVA T AA + L F+ R+ +K Y+A V+G G+V LP+ Sbjct: 136 -VHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVTLPIGRH 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R K V +PA+T ++V + D + + L+ TGR+HQ+RVH AL P++GD Sbjct: 195 SLERKKMSVSSPQARPAETRWKVRKAFVDASL-LELEIHTGRTHQIRVHCTALQRPVVGD 253 Query: 179 RFY--------------ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y AS E A R +LHA L HP G M F AP Sbjct: 254 PTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAP 305 >UniRef50_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum centenum SW RepID=B6IQX5_RHOCS Length = 336 Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 8/201 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLE-EHKDSVMTRIQRDYP-QAESVHRLDMATSGVIVV 73 +L++D ++V++KP+GL + G + +H D+++ ++ + + + VHRLD TSG +V+ Sbjct: 101 VLFRDHDVIVLDKPAGLATQGGTNQVKHLDAMLDALKFEAEGRPKLVHRLDKDTSGCLVL 160 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-G 132 A + AA +L FR RE +K Y A G P P +G +DLP+ + R ++ E G Sbjct: 161 ARSAAAAAKLTAAFRSREARKIYWAVTVGVPKPMKGRIDLPVAKEAGTRGERMTVDEDEG 220 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP----EARA 188 A T Y V+E+A A V L P TGR+HQLRVHM ALG PILGD YA E Sbjct: 221 VHAITYYTVLEHAHKQAAFVALWPRTGRTHQLRVHMAALGTPILGDGKYAGQGAFLEGAG 280 Query: 189 MAPRLL-LHAEMLTITHPAYG 208 PR L LHA + + HP G Sbjct: 281 DLPRQLHLHARRIILPHPRGG 301 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 20/229 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVH 61 + P++ L I+Y+DD ++V+NKP G++ PG V + Q P+A VH Sbjct: 174 DQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLPRAGLVH 233 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGH-PSPA-EGLVDLPLICDW 119 R+D TSG++V+ TKAA+ EL+ Q +++ + Y V G PS A + +D P+ Sbjct: 234 RIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDAPIGRHR 293 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V TGK A T + +D + + ++ TGR+HQ+RVH+ +GHPI+GD Sbjct: 294 TQRTKMTVT-STGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGHPIIGDD 352 Query: 180 FYA---------SPEARAMA---PRLLLHAEMLTITHPAYGNSMTFKAP 216 Y +PE R PR LHA L HP G S+ AP Sbjct: 353 IYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAP 401 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 15/215 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEH-KDSVMTRIQRDYPQ---AESVH---RLDMA 66 L I+Y+DD ++++NK + + ++P R EH SV + Y + A +VH RLD Sbjct: 82 LCIIYEDDAVLIINKEANMSTIPSR--EHPAGSVANALLSHYDKQHLASTVHIVTRLDRD 139 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++++A + L +Q +++ K+ Y A V G EG++D P+ + ++ Sbjct: 140 TSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKSDSIIERT 199 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 VC E G+ A T ++V++ T V L+ TGR+HQ+RVHM +GHP+LGD Y Sbjct: 200 VC-EDGQRAVTHFKVIDSTYHKT-HVALELETGRTHQIRVHMAHVGHPLLGDSLYGGR-- 255 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 R R LH++ LT HP M+F K P+D Sbjct: 256 RDEMKRQALHSKSLTFYHPILEKEMSFTIKLPSDM 290 >UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q30SZ1_SULDN Length = 241 Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 28/228 (12%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD------YPQAESVHRLDMAT 67 L ILYQD+H++ +NKPSGLL ++ H+ + R+ YP +HRLD T Sbjct: 2 LEILYQDEHLVAINKPSGLLVHRSPIDRHETEFAIQTLRNQLGRFVYP----IHRLDKPT 57 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN------ 121 SGV++ AL K + + + +F E KK Y+A V G+ + G +D L + Sbjct: 58 SGVLLFALDKESAKIMGEKFMAHEAKKSYIAVVRGY-TLQSGEIDYALSIKFDKIADKDS 116 Query: 122 ----RPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 P++ + Y+ + ++EV +Y + V L P+TGR HQLR HM + H IL Sbjct: 117 SSDKEPQEALTHYKRLATVELDFEVGKYDKTRYSLVKLNPLTGRKHQLRRHMKHISHHIL 176 Query: 177 GDRFYASPEARAM------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y E + R+LLHA L I+HP + KAP D Sbjct: 177 GDTKYGRGEHNKLIRQEFGCHRMLLHAIALEISHPYTKELLYIKAPLD 224 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 126/268 (47%), Gaps = 59/268 (22%) Query: 11 EPW--LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-DYP--------QAES 59 EPW L I+++D+ ++VVNK +G+++ P E V + D P QA S Sbjct: 65 EPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQALS 124 Query: 60 -------------------------VHRLDMATSGVIVVALTKAAERELKRQFREREPKK 94 VHRLD TSGV+VVA +A L QF R ++ Sbjct: 125 DDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARVVRR 184 Query: 95 QYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVV- 153 +YVA + G PSP++G ++ P+ D +R + V G+ A + YEV+ A+ A +V Sbjct: 185 KYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLANGNASLVE 244 Query: 154 LKPITGRSHQLRVHMLALGHPILGDRFYAS-----------------PEARAMAP---RL 193 + TGR+HQ+RVH +GHPILGD Y EA+A+ R Sbjct: 245 WRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMSTIDRP 304 Query: 194 LLHAEMLTITHPAYGNSMTFKA--PADF 219 +LHA L THP G ++ F P DF Sbjct: 305 MLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_B9MS57 Pseudouridine synthase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MS57_ANATD Length = 293 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 114/208 (54%), Gaps = 12/208 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-----VHRL 63 P E + ILY+D+ + VNKPSGL S P + + D++ ++ Y +++ ++RL Sbjct: 72 PVEGSIDILYEDNFFLFVNKPSGLPSHPSK-GHYFDTIANYVEY-YLNSKNLTSHIINRL 129 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++V A + +F +R K Y+A V G + GL++ P+ + Sbjct: 130 DKDTSGIVVFAKNSYFHSIVSYEFEKRRVDKTYIAIVHGILTKKSGLIEKPI--KRSDDG 187 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 ++ ++ G A T YEV++ + +N + + LKPITGR+HQLRVH+ ++GHPI+GD Y Sbjct: 188 IKREIHQDGSFASTYYEVID-SFENFSVLKLKPITGRTHQLRVHLSSIGHPIVGDYIYG- 245 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSM 211 E + LLLHA ++ N + Sbjct: 246 -EEKTQNTPLLLHAYSISFNFKLINNKV 272 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 21/225 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRDYPQAESVHR 62 P+ L I+Y+DD ++VVNKP+GL+ P G L + + + P+A VHR Sbjct: 100 PEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQ-IPRAGIVHR 158 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++VVA T A+ L Q +ER K+ Y A G P +G ++ + D NR Sbjct: 159 LDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANG-IVPFDGKIETQIGRDPHNR 217 Query: 123 PKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 K V GKPA T +V+E Y A + L+ TGR+HQ+RVHM HP+ GD Y Sbjct: 218 LKMAVVKFGGKPAVTHVKVLERYLAHSYIECSLE--TGRTHQIRVHMREANHPLAGDPVY 275 Query: 182 ASPE----------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +P +++ R LHA L+ THP G +++F+AP Sbjct: 276 GNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAP 320 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 115/222 (51%), Gaps = 27/222 (12%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-------RDYPQAESVHRLDMA 66 L I+Y+DDHI+VVNKP+G++ P + D + D P+A VHRLD Sbjct: 90 LDIVYEDDHILVVNKPAGMVVHPA--AGNWDGTLLNALLFHAPQLHDVPRAGIVHRLDKE 147 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++VVA T A+ L RQ + R K++Y A VWG G+VD PL D +R K Sbjct: 148 TSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLW-RNGVVDQPLGRDPRSRTKMA 206 Query: 127 VCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 + GKPA T YE++E ++ R L+ TGR+HQ+RVHM L P++GD Y Sbjct: 207 IN-RMGKPAITRYEILERFSVQTYLRCNLE--TGRTHQIRVHMQHLKAPLVGDPVYGFRG 263 Query: 186 ---ARAMAPRL----------LLHAEMLTITHPAYGNSMTFK 214 RAM L LHA L + HPA M ++ Sbjct: 264 IVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQ 305 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 28/232 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------- 59 P++ L I+Y+DD++M++NKP ++ P H + Y Q S Sbjct: 86 PEDIPLNIIYEDDYLMLINKPYDMVVHPA--GGHPSGTLVNAVTFYCQNLSQINGPLKAG 143 Query: 60 -VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV++V + A + QF +R KK+Y A V G + +++P+ Sbjct: 144 IVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEINMPIGRH 203 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K V +TGK A + YEV+E T V + P TGR+HQ+RVHM A+GHP++ D Sbjct: 204 RVDRQKMAVRRDTGKNATSVYEVIERFRGYTL-VKIMPKTGRTHQIRVHMQAIGHPVVAD 262 Query: 179 RFYA---------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 Y+ +P+ ++ R LHA + HP M F+ Sbjct: 263 EMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQV 314 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 22/226 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ+ L I+Y+DD I+V+NK ++ P V + D P+A VHRL Sbjct: 76 PQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVHRL 135 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+VVA T AA + L R+ +++Y V GH A G VD P+ +R Sbjct: 136 DKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGH-VVAGGTVDAPIGRHPRDRQ 194 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 +Q V TGK A T Y V+++ + T RV L+ TGR+HQ+RVHM + HP++GD Y Sbjct: 195 RQAVT-ATGKRAVTHYRVLQHYGEQTWLRVQLE--TGRTHQIRVHMAHIRHPVIGDPVYG 251 Query: 183 S-----PEARAMAPRLL-------LHAEMLTITHPAYGNSMTFKAP 216 P A +L LHA LT+ HP G M F+AP Sbjct: 252 GRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAP 297 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 118/239 (49%), Gaps = 37/239 (15%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYPQAESVHRL 63 L ILY+DDH++V+NKP+GL+ PG L H + ++ I + VHRL Sbjct: 81 LDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIG-GVKRPGVVHRL 139 Query: 64 DMATSGVIVVALTKAAERELKRQF----REREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 D TSGV+VVA A + L QF R ++Y A +WG P +D L Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLGRSP 199 Query: 120 PNRPKQKVCYET---GKPAQTEYEVVE---YAADNTARVVLKPI---TGRSHQLRVHMLA 170 NR KQ V ++ + A T + ++E AD+T+ L TGR+HQ+RVHM Sbjct: 200 HNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASLLECRLETGRTHQIRVHMAH 259 Query: 171 LGHPILGDRFYASP---EARAMAPRL----------LLHAEMLTITHPAYGNSMTFKAP 216 +GHP++GD Y + ++ + P L LHA LT HP+ G ++F AP Sbjct: 260 IGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVISFSAP 318 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 20/225 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-----RDYPQAESVHRL 63 PQ+ L I+Y+D+ I+V+NKP L+ PG + + D P+A VHRL Sbjct: 79 PQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G++VVA T A+ L + RE ++Y A GH + A G VD P I P + Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEP-ISRHPTKR 196 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + GKPA T Y ++E+ +T R+ L+ TGR+HQ+RVHM + HP++GD Y Sbjct: 197 THMAVHPMGKPAVTHYRIMEHFRVHT-RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 Query: 184 ----PEARAMA--------PRLLLHAEMLTITHPAYGNSMTFKAP 216 P+ + A R LHA ML + HP G M + AP Sbjct: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 >UniRef50_Q1RJX7 Ribosomal large subunit pseudouridine synthase C n=14 Tax=Rickettsia RepID=RLUC_RICBR Length = 301 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 106/202 (52%), Gaps = 2/202 (0%) Query: 16 ILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 ++Y+DD+I+ +NKP+GL + G ++ DS + + + VHRLD TSG++++A Sbjct: 91 LIYEDDNIIAINKPAGLATQGGSKINLSVDSALKYLNSQGADFKLVHRLDKETSGLLLIA 150 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK-QKVCYETGK 133 + +L F+E+ +K Y+A +G P +G V + + PK + GK Sbjct: 151 KNYVSSVKLHDAFKEKLVEKTYLAVTYGKPIKDQGEVKTNIEKSKGSIPKITDINDNNGK 210 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193 A T Y++++ +N V PITGR HQLR+H LG PI GD Y + + + + Sbjct: 211 LAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLHAKLLGCPIFGDNKYGNDKLMPYSKYM 270 Query: 194 LLHAEMLTITHPAYGNSMTFKA 215 LHA + ++ +G + +A Sbjct: 271 FLHANNIVLSKKVFGKEVNLEA 292 >UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales RepID=Q28US1_JANSC Length = 354 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 32/231 (13%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEE-HKDSVMTRIQ---RDYPQAESVHRLDMATSGV 70 ++Y+DDHI+ +NKP+GL + G + H D + ++ D P+ VHRLD TSGV Sbjct: 98 AVIYRDDHIIAINKPAGLPTQGGTGQSRHVDGLAEALKFGLEDKPRL--VHRLDKDTSGV 155 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR-------- 122 +++A T+ + L FR R +K Y A V G P P G + L L+ P Sbjct: 156 LLMARTRMGAKALTDAFRLRSTRKIYWAAVAGSPLPRMGTIKLGLV-KAPGHGRGGENEK 214 Query: 123 ----PKQKVCYETG-KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 P ++ G K A+T+Y V+ L PITGR+HQLR HM +GHPI+G Sbjct: 215 MRAVPVDEIAQVDGAKRAETDYAVMSNLGGRVCWCALVPITGRTHQLRAHMAEIGHPIIG 274 Query: 178 DRFYASPEARAMAP------------RLLLHAEMLTITHPAYGNSMTFKAP 216 D Y + +L LHA L+ HP G + AP Sbjct: 275 DGKYGGSGQENLGDGWGAQLGGEISRKLHLHARSLSFRHPMTGAQVNLVAP 325 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEH---KDSVMTRIQRDYPQAE--SVHRLDMATSGV 70 ILY+DDH+++VNKP GLL P H V R +A+ VHRLD TSGV Sbjct: 88 ILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSGV 147 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++ A A L RER K+ YVA V G G ++ P+ D + +++V Sbjct: 148 VLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRRRVT-P 206 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA 190 G PA T Y+V E T +V + TGR+HQ+RVH +GHP+LGD Y R + Sbjct: 207 NGDPAITHYQVKERFQTAT-KVECQLETGRTHQIRVHFSHIGHPLLGDELYGG--KRELI 263 Query: 191 PRLLLHAEMLTITHPAYGNSMTFKAP 216 R LHA +L HP G + AP Sbjct: 264 KRQALHAAVLKFEHPFGGEVIEVTAP 289 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 18/221 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLS--VPGR--------LEEHKDSVMTRIQRDYPQAE 58 P++ L ILY+D+H++++NKP G++ PG L H ++ D + Sbjct: 82 PEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSDASVDSIRPG 141 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+V A T + +++L F R+ K+Y A G+P E ++ P I Sbjct: 142 IVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGNPGNCE--LNWP-IGR 198 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILG 177 P KQ E GK A T E +E + A+++L TGR+HQ+RVH+ GHPILG Sbjct: 199 HPIHRKQMTVREDGKEALTFCETLEVGNEICLAKLILS--TGRTHQIRVHLKHKGHPILG 256 Query: 178 DRFYASPEA--RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 D Y S + R A R +LHA L HP + +AP Sbjct: 257 DSIYGSKQVNMRYRAERQMLHARKLAFIHPITQQKIEVEAP 297 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 14/212 (6%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMATSG 69 +Y+D +++VNK G+++ P + H D + Y +++ V+RLDM TSG Sbjct: 89 VYEDVDLILVNKEPGIVTHPTK--SHPDWTIANGAALYLKSKGIDCKVRFVNRLDMDTSG 146 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 ++++A A L Q +E +K+Y+A VWG EG ++ P+ + K +V Sbjct: 147 LLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIYRTTMDSIK-RVVD 205 Query: 130 ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM 189 E G+ + TE++V+E N V +K +TGR+HQ+RVHM LGHP++GD Y +A + Sbjct: 206 ERGQESITEFKVLERYK-NATMVEVKLLTGRTHQIRVHMEHLGHPLIGDTLYGKEDAE-L 263 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 R LHAE L P + ++ KA PAD Sbjct: 264 IDRQALHAEYLRFWQPRFKRAIEVKADLPADL 295 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 13/197 (6%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSV------MTRIQRDYPQAESVHRLDMATSGV 70 +Y+D+H++V++KP+G++ P E M + ++ + ++RLDM T+G+ Sbjct: 99 VYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEF-KIRFINRLDMDTTGL 157 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +++A + + + + + +K+Y+A V G P EG++D P I P+++V E Sbjct: 158 LMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAP-IKAVEGEPRRQVM-E 215 Query: 131 TGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM 189 GKP+ TEY+VV + + N + + ++ TGR+HQ+RVH+ +G PILGD FY E+ Sbjct: 216 GGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQIRVHLKHIGCPILGDEFYGGKES--- 272 Query: 190 APRLLLHAEMLTITHPA 206 A R LLH+ L THP Sbjct: 273 ADRQLLHSRYLRFTHPV 289 >UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VN9_LACSS Length = 306 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 113/224 (50%), Gaps = 29/224 (12%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---PQAES-----VHRLDM 65 L I Y+DDH ++V+KP+ + S+P H ++ M + Y QAES V RLD Sbjct: 78 LKIAYEDDHFLIVDKPAFVASLPA--PNHPNNTMANFVKQYLIDEQAESLAVHVVTRLDR 135 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP-- 123 TSG+++ A L RQ + +E +K Y+A G DLP W +RP Sbjct: 136 DTSGLMMFTKHGFAHSLLDRQLQSKELQKTYIAIASGDMRE-----DLPQHA-WIDRPIK 189 Query: 124 ------KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 ++V E GK + TEY + D V LK +TGR+HQ+RVH +LGH ++G Sbjct: 190 RSEEFYMRRVVGEGGKRSLTEYWQAAHG-DGATLVKLKLLTGRTHQIRVHFASLGHSLIG 248 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 D Y E+ + PR LH LT HP ++T K+ PADF Sbjct: 249 DNLYG--ESNDLLPRQALHCRQLTFYHPFEERTITVKSPVPADF 290 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 112/218 (51%), Gaps = 20/218 (9%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AES----------VHRLD 64 ILY+DD ++V++KP+G++ P +V+ + YPQ AE VHRLD Sbjct: 85 ILYEDDVMLVIDKPAGVVVHPA-AGNPTGTVVNALLGRYPQLAEQLACTTSRPGIVHRLD 143 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP-NRP 123 TSG + VA T A+ +L F RE +K Y+A G P G + LI P +R Sbjct: 144 KDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELS-TLIGRHPVSRQ 202 Query: 124 KQKVCYETGKPAQTEYEVVEYAA--DNTARVVL--KPITGRSHQLRVHMLALGHPILGDR 179 K V GK A T Y V EY D VL + +TGR+HQ+RVH+ +LG P+LGD Sbjct: 203 KMAVVERNGKLAITRYRV-EYTGMLDGVEIGVLAVRILTGRTHQIRVHLASLGVPVLGDA 261 Query: 180 FYASPE-ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y A A R LLHA L + HPA G M F AP Sbjct: 262 VYGGARTAVAGVERQLLHAWKLCVPHPATGTPMEFTAP 299 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 16/216 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKD-SVMTRIQRDYPQAES---------VHRL 63 L ILY+D+ ++++NKP+GL+ PG H D +V+ + P VHRL Sbjct: 98 LDILYEDEQLIIINKPAGLVVHPG--PGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRL 155 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G +VVA T+ A L+ Q +E+ ++ Y V+G P +G V+LP+ +R Sbjct: 156 DKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQ 215 Query: 124 KQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 K + + G+ A T + ++E N + + + TGR+HQ+RVH +GHP++GD Y Sbjct: 216 KMGIVPVEKGGREAVTHWRLLERIG-NHSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLY 274 Query: 182 ASP-EARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 SP P LHA L++ HP G +T AP Sbjct: 275 TSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAP 310 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 14/218 (6%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------DYPQAESVH 61 P E L I+Y+DD ++VVNKP + + E D+ +Q A +VH Sbjct: 72 PTYEYDLEIIYEDDFLLVVNKPVDMKTHANDSYE-TDTCANAVQYYLEKTGQDANALAVH 130 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++ A K A L Q R + Y+A V G ++ P+ D + Sbjct: 131 RLDQTTSGLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQTINKPIGEDRHH 190 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 ++++ G+PA T +V+E + NT+ V + TGR+HQ+RVH+ +GHPI+GD Sbjct: 191 GSRRQIS-PYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIGDTL 249 Query: 181 Y-ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 Y SP A R++LHAE L + HP G M F APA Sbjct: 250 YGGSPRAN----RIMLHAEKLHLNHPFKGKEMNFSAPA 283 >UniRef50_D2QJH0 Pseudouridine synthase, RluA family n=3 Tax=Bacteria RepID=D2QJH0_9SPHI Length = 308 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 20/214 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMA 66 L ILY+D ++V+NK +GLLS+ E +D I +Y + E+ +HRLD Sbjct: 89 LTILYEDQFLIVINKQAGLLSMATNKE--RDRTAYGILSEYTKKENPKNKIFIIHRLDRE 146 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSGV++ A ++ +R ++ + ++ YVA V G P P +G I + K Sbjct: 147 TSGVMMFAKSEKVQRLMQESWNATTKERTYVALVEGIPEPPQG-----TITSYLRESKAL 201 Query: 127 VCYETGKPAQTEYEVVEYAADNT----ARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + Y + P + + Y T A + L+ TGR +Q+RVHM +GHP+ GD Y Sbjct: 202 IVYSSQNPDTGQLSITNYTVTKTGNGYALLELELETGRKNQIRVHMQDIGHPVAGDEKYG 261 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + E+ + RL LHAE+L HP G M F AP Sbjct: 262 A-ESDPIG-RLGLHAEVLAFEHPITGVPMRFDAP 293 >UniRef50_C7PP03 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP03_CHIPD Length = 247 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 2/169 (1%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 +I+ + +++NKP+G+L++P R + DS+ +++ Y + +VHRLD TSGVI+ A Sbjct: 6 IIIKETADFVILNKPAGMLTIPDRHDNQLDSLQGLLKKHYGEIFTVHRLDKDTSGVILFA 65 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 + A + + F R KK Y V G P G VD I + P + V GK Sbjct: 66 KNEVAHKYYSQLFEGRNVKKFYKGLVNGQLHPETGSVD-EAIMEHPTIKGRMVTNRKGKN 124 Query: 135 AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 AQT+Y+V+E A + V L+ TGR+HQ+RVHM LGHPI D Y + Sbjct: 125 AQTDYQVLE-AFGLYSLVQLQIHTGRTHQIRVHMKHLGHPIAVDELYGT 172 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 17/212 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE-------SVHRLDMA 66 L I Y+DDH++V+NKP G+ ++P R EH + Y ++ +V+RLD Sbjct: 105 LDIHYEDDHLLVINKPQGMPTIPSR--EHPSRTLANAVMGYYESHHIPFTFHAVNRLDRD 162 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++VVA A +L + R + K+ Y+A G P EG + P I P+ ++ Sbjct: 163 TSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTIHAP-IKRRPSSIIER 221 Query: 127 VCYETGKPAQTEYEVVEYAADNTA--RVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + G+ A T Y+V+ DN A V + TGR+HQ+RVH LGHP+LGD Y Sbjct: 222 MVAADGQEAITHYKVIN---DNQAYSEVEINLETGRTHQIRVHFAHLGHPLLGDDLYGG- 277 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + + R LH + + + HP G + F AP Sbjct: 278 -SIELLARQALHCQRVELIHPFTGKHLHFSAP 308 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 15/219 (6%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRD-YPQAE 58 Y PP+ L I+ +D+ I +VNK G+ P G L V ++ + P Sbjct: 75 YLPPEPLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLAN--GLVYHWLENNPAPTFH 132 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL-IC 117 +V+R+D TSG+++VA + ++L Q + ++ + YVA V G G +DLPL C Sbjct: 133 AVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNGYIDLPLEKC 192 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + +Q TG+ A T +EV++Y D T + L P TGR+HQ+RVH+ LGHP++G Sbjct: 193 EGKTTKRQ--ISSTGQQALTRFEVLQYITDCTL-IRLMPETGRTHQIRVHLSHLGHPLVG 249 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 D Y + A R LHA+ ++ HP G+ M+F+ P Sbjct: 250 DTLYGG--SIAQIGRHCLHADKISFLHPRTGHPMSFQIP 286 >UniRef50_B7FU02 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FU02_PHATR Length = 240 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 118/241 (48%), Gaps = 36/241 (14%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMTRIQR---DYPQAESVHRLDMATSG 69 L ILY D+HI VVNKPSG+LSVPG R +++ I D Q VHR+DM TSG Sbjct: 1 LHILYCDEHICVVNKPSGILSVPGPRRNPSIANLVYEILNPPIDIDQM-VVHRIDMDTSG 59 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL-VDLPLICDWPNRPKQKVC 128 V+V ALT+ A R+L FR R KK Y A + GH A + +D+ L D + P + Sbjct: 60 VLVFALTELALRQLHDDFRSRRVKKTYEALLAGHFRKATQVEIDVALERDPYHPPFMRRY 119 Query: 129 YETGKPAQTE------YEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 +E + A Y+ A +RV + P TGR+HQLRVH ALG+PI+GD Y Sbjct: 120 WEPQRSATYSRQFSQIYQPSAQAHLPVSRVHMSPHTGRTHQLRVHAAALGYPIIGDDIYG 179 Query: 183 ----------SPEARAMAPRLL--------------LHAEMLTITHPAYGNSMTFKAPAD 218 S + P + LHA+ L I HP G M F+ A Sbjct: 180 FEGEGDCGVNSTILDQLIPNRMSLHQQLQELQLPLCLHAKQLCIFHPFSGAPMIFECEAP 239 Query: 219 F 219 F Sbjct: 240 F 240 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 108 bits (271), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 107/212 (50%), Gaps = 9/212 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGRLEEHKDSVMTRIQRDYPQAESV------HRLDM 65 L ILY+D+ ++VVNK G++ PG + + + R+ V HR+D Sbjct: 107 LEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPGIVHRIDK 166 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG++VVA A + L Q + ++Y+A V G G V+ P+ D +R K Sbjct: 167 DTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPADRKKM 226 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V ++ K A T YEV+E D T + + TGR+HQ+RVHM L HP+LGD Y + Sbjct: 227 AVVFQNAKEAVTHYEVLERFRDFTL-LEARLETGRTHQIRVHMAYLKHPVLGDPLYGPRK 285 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 +LHA++L HP G M F APA Sbjct: 286 NPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPA 317 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 108 bits (271), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 25/238 (10%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSV------MTRI-QRD 53 +G ++ P P L IL++DD ++V+NK G++ PG E V +R+ R Sbjct: 75 VGEDSLQPRPMP-LEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRG 133 Query: 54 YPQAES-VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 P+ VHRLD TSG ++VA ++ A EL RQF+ E K+Y+A V+G + A G + Sbjct: 134 APRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGASGEIR 193 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEV-VEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + +R + V + G+ A ++++V V + + RVV+K TGR+HQ+RVH+ + Sbjct: 194 TGMGRHPVDRKRMAVLEKGGREAVSQWKVAVAWGEVSLLRVVIK--TGRTHQIRVHLSHM 251 Query: 172 GHPILGDRFYASPEARAMA-------------PRLLLHAEMLTITHPAYGNSMTFKAP 216 HP++GD Y + +A A R +LHA L HP G ++F AP Sbjct: 252 QHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTAP 309 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 17/223 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP--GRLEE-------HKDSVMTRIQRDYPQAES 59 P+ L I+Y+D+ I+V+NKP+GL+ P G L+ H + D+ + Sbjct: 76 PEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTGSDFYRPGI 135 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG++VVA AA + L Q + ++ Y+A V G +G ++ PL D Sbjct: 136 VHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTIEAPLQRDP 195 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR + V E GK A T ++V+E +N + L+ TGR+HQ+RVH+ +GHP++GD Sbjct: 196 ANRLRWTVAKE-GKYALTRFQVME-NFENATLLDLELETGRTHQIRVHLEFIGHPLVGDP 253 Query: 180 FYASPEARAMAPRL------LLHAEMLTITHPAYGNSMTFKAP 216 Y + LLHA L + HP G + FKAP Sbjct: 254 VYRKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAP 296 >UniRef50_D2R4N0 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4N0_9PLAN Length = 313 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 13/211 (6%) Query: 16 ILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRDYPQAESVHRLDMATSG 69 I+Y+D H++VV KP+ LL+VP G L E + + + R A VHRLD SG Sbjct: 89 IVYEDRHLIVVEKPAALLTVPTPKNDRGTLLERVANYVKIVSRG-KGAFQVHRLDRGVSG 147 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 +++ T + L+ QF +P+++YVA V G EG+++ L D Sbjct: 148 LLIFGKTTELAQMLRDQFAMHKPEREYVAIVRGKLDKPEGMIESFLATDRDLNRYSTDDE 207 Query: 130 ETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-- 186 G+ A T Y V+ E A + +V L+ TGR +Q+RVH GHP++GD+ Y + EA Sbjct: 208 SIGQHAVTHYRVIEELAGASVVQVWLE--TGRRNQIRVHFAEAGHPLIGDQRYRADEAAD 265 Query: 187 -RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 R R+ LHA +L ++HP G + F++P Sbjct: 266 TRWTHARIALHARLLGLSHPMTGEPLRFESP 296 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 14/223 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRDYPQAESVHR 62 P+ L I+++D ++V+NKP+GL+ P G L + I P+A VHR Sbjct: 110 PEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSIS-GVPRAGIVHR 168 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++VVA T A +L RQ + R K++Y+A VWG P+ G +D + +R Sbjct: 169 LDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPN-ITGKIDASIGRHARDR 227 Query: 123 PKQKVCYE-TGKPAQTEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHPILGD 178 K V T KPA T ++ + + + ++ + TGR+HQ+RVHM ++G ++GD Sbjct: 228 IKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGD 287 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + PR LHA L + HP G ++ + + P DF Sbjct: 288 GLYGKQHLTTVFPRQALHARRLGLIHPVSGEAVEWSSELPQDF 330 >UniRef50_Q0BYW5 Pseudouridine synthase family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BYW5_HYPNA Length = 244 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 13/214 (6%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRL--EEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 +++++D I+ NKP G+ S G + D + + + + VHRLD TSGV++ Sbjct: 21 LLIHEDAAILGFNKPPGMASQGGSSVGQSLDDLLWAFAKSNGKRPRLVHRLDQGTSGVML 80 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAE-GLVDLPLI-CDWPNRPKQ---KV 127 A T+ A L F R+ +K Y+A V G PAE G++D L+ + RP+ K Sbjct: 81 TARTQPAAAFLSAAFAGRDAQKTYLALVKGKLPPAEHGVIDASLVKVEEGGRPRMILAKP 140 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 + +PA+T + V+ D+ A + L P TGR HQ+RVH+++LG PILGD Y E + Sbjct: 141 SRKGAQPARTGWAVLARNEDH-ALMQLTPETGRMHQIRVHLMSLGCPILGDGLYG--EGQ 197 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 A APR++LHA L + HP G ++T +AP DF Sbjct: 198 ATAPRVMLHAARLEVPHP-EGGTLTLEAPVPEDF 230 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 26/231 (11%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------------VH 61 L ++++D H+ V++K +GL + P E V + R +P S VH Sbjct: 99 LEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHR-WPDVASDISGMDRQRPGIVH 157 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++VVALT+ L F R +K Y+A V G P+ G +D P+ Sbjct: 158 RLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQPAGTIDAPMGRHPSQ 217 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPI-TGRSHQLRVHMLALGHPILGDRF 180 + + V G+ A ++Y V+ A +V I TGR+HQ+RVHM +GHP+LGD Sbjct: 218 KTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVRIHTGRTHQIRVHMAHIGHPLLGDSA 277 Query: 181 YASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 Y E +APR +LHA L+ HPA +T + PADF Sbjct: 278 YGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATCERVTLWRRPPADF 328 >UniRef50_C1TRW2 Pseudouridine synthase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRW2_9BACT Length = 305 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 20/214 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR--IQRDYPQAESVHRLDMATSGVI 71 LV +Y+D+ + VV+KP+GLLS P + + DSV+TR + Q ++V+RLD TSG++ Sbjct: 79 LVTVYRDESLWVVSKPAGLLSQPDK--KGGDSVVTRAFLPGSSFQPQAVNRLDRNTSGIM 136 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 V+ALT + R+L ++R+ E +K Y+A V G P EG +D PL D + KV ++ Sbjct: 137 VLALTGESLRDLSSRWRDGEMEKVYLALVVGDL-PEEGSIDAPLSKDGSS---NKVFVDS 192 Query: 132 -GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM- 189 G+ + T Y + + + ++ ITGRSHQ+RVHM +GHP+LGD Y + Sbjct: 193 KGQSSLTLYRRLA-SGGGLSLCLVTLITGRSHQIRVHMSHIGHPVLGDVKYGDRALNGVK 251 Query: 190 -APRLLLHAEMLTITHPAYG------NSMTFKAP 216 A R +LHA +++ P +S TF+ P Sbjct: 252 GAKRPMLHA--FSVSFPDMSGDLSSLSSKTFRTP 283 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 114/228 (50%), Gaps = 21/228 (9%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQRDYP 55 +N PQ+ L I+++D+H++VVNKP+G++ P L H ++ I Sbjct: 74 HNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIG-GVA 132 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHR+D TSG++VVA T A L QF + ++Y A V GHPS +G VD PL Sbjct: 133 RPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPS-LQGHVDAPL 191 Query: 116 ICDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 NR K + + GK A T Y ++ N + + + TGR+HQ+RVHM ++GH Sbjct: 192 ARSSVNRQKMAIVSDGRGKRAVTHYRMIT-PLKNASLIECRLETGRTHQVRVHMSSIGHS 250 Query: 175 ILGDRFYASPEARAMA-------PRLLLHAEMLTITHPAYGNSMTFKA 215 +LGD Y + A R LHA L HP G + F A Sbjct: 251 LLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDA 298 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 105/213 (49%), Gaps = 15/213 (7%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----------VHRLDMA 66 LY+D+ I+V+ KP GL+ P + H+ + + + S VHRLD Sbjct: 96 LYEDEDILVLVKPPGLVVHPA--DGHRQGTLVHGLLHHCRNLSGISGQLRPGIVHRLDKD 153 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG +VVA A L +QF+ RE +K Y A + G + G V LP+ +R K Sbjct: 154 TSGCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVHRKKMA 213 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 V E G+ A T + V + + V L TGR+HQ+RVHM ALGHP+ GDR Y Sbjct: 214 VRREGGREAVTHWRVRQRFSAGYTLVELLLETGRTHQIRVHMAALGHPLAGDRLYGRNPE 273 Query: 187 RAM---APRLLLHAEMLTITHPAYGNSMTFKAP 216 + M R LHA L HP G +TF AP Sbjct: 274 KDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAP 306 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 115/225 (51%), Gaps = 20/225 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ+ L ILY+D+H+ V+NKP+GL+ PG V + RD P+A VHRL Sbjct: 85 PQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRL 144 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+VVA T A+ L Q R+ +QY+A V + G V+ + +R Sbjct: 145 DKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVS-ALVSGGTVNAAIERHPRDRL 203 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + +V +TGK A T Y + E +TA + + TGR+HQ+RVHM L HPI+GDR Y Sbjct: 204 RMEVS-DTGKEAVTHYRLRERFRAHTA-LECRLDTGRTHQIRVHMAHLRHPIVGDRLYGG 261 Query: 184 ----PEARAMA--------PRLLLHAEMLTITHPAYGNSMTFKAP 216 P+ A R LHAE+L HP + AP Sbjct: 262 SLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAP 306 >UniRef50_D0LUH1 Pseudouridine synthase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUH1_HALO1 Length = 303 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 19/211 (9%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVI 71 P I+++D ++VV+KP+GLLS P E ++ ++ + VHR+D+ TSG++ Sbjct: 94 PRFKIVFEDRDLVVVDKPAGLLSAPT-PESDLGNLAALLRERRERVYVVHRIDLQTSGLL 152 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 V A T+ A + L +FRE + ++ Y A V G P +DLPL Sbjct: 153 VFAKTRRANQHLSERFREHQIERAYTAVVAGAPVEDTFTIDLPL---------------R 197 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA- 190 G+ A T +V++ + A + + TGR+HQ+R+H L G+P+LGD Y + + Sbjct: 198 GRRATTHLQVLQRIGERAAVLDARLETGRTHQIRLHCLQRGYPVLGDPQYGERMSDELTP 257 Query: 191 PRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 PR+ LHA +L HP G + F++ PAD Sbjct: 258 PRMALHARVLGFEHPRSGEARRFESELPADL 288 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 10/210 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGRLEEHKDSVMTRIQRDY-PQAES--VHRLDMATS 68 L ++Y DD + V++KP+G+ + PG ++ + PQ VHRLD TS Sbjct: 76 LRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANTS 135 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+A + A LK FR+R K+Y A V G+P P+ G+++ P+ D +R + + Sbjct: 136 GLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDLKHRDRFCID 195 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD-RFYASP--E 185 Y +G+ A T+Y E T + + P TGR+HQ+RVH AL HP++GD ++ A P Sbjct: 196 Y-SGRDAVTQYSTEEVYPGFTL-LSVAPKTGRTHQIRVHFSALRHPLVGDVKYGADPVFS 253 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + R LHA L+ THP G + F++ Sbjct: 254 QKVNLKRQWLHAYHLSFTHPVSGVFVEFES 283 >UniRef50_Q38Y05 Pseudouridine synthase, 23S-rRNA-specific n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38Y05_LACSS Length = 296 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 9/220 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHK---DSVMTRIQRDYPQAES 59 ++NY +L++ D +++VNKP+G+ + P R E+ + V + + +A Sbjct: 72 VQNYELDATQSFSVLFESDDLLIVNKPAGIKTHPNRPGENGTLMNQVAFYLAQQGKKAYM 131 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG--HPSPAEGLVDLPLIC 117 VHR+D ATSG +++ T L RQ +++ +QY+A V H ++ P+ Sbjct: 132 VHRIDEATSGTLLIGKTPIVIGILNRQLSQKKMARQYIAIVDDPKHELAEHATINSPIGV 191 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 D N ++ V Y G A T Y V+ TA + + TGR+HQ+RVH+ ++GHPILG Sbjct: 192 DPENDRQRCVDYINGLSAITHYRVLSRKGA-TAVLAVDLETGRTHQIRVHLASIGHPILG 250 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 D Y + PRLLLH + L T P T AP Sbjct: 251 DPLYNPTDT---TPRLLLHGQTLRYTEPYTDQPRTVTAPV 287 >UniRef50_A0LBW6 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LBW6_MAGSM Length = 224 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 108/205 (52%), Gaps = 10/205 (4%) Query: 16 ILYQDDHIMVVNKPSGL--LSVPGRLEEHKDSV-MTRIQRDYPQAESVHRLDMATSGVIV 72 IL+ D +++ NKP+ + PG E D + +R P A +VHRLD ATSG +V Sbjct: 13 ILHMDADLLIFNKPNRMPIYRGPGGGETLADHLPQLCFERGKPPA-AVHRLDSATSGCLV 71 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI-CDWPNRPKQKVCYET 131 + K R L F + +K Y A V G P +GL++LPL WP RP+ KV Sbjct: 72 LGRHKGMRRSLSNLFAQGGVEKLYWAVVQGRPLMDQGLIELPLQDVGWPGRPRVKV-RMG 130 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAP 191 GK +T ++V+ Y + T + L P TGR+HQLRVH A+G PI+GD Y A P Sbjct: 131 GKWGRTLFQVMGYGQNETL-LALMPQTGRTHQLRVHCAAMGCPIVGDPLYGG--AACDGP 187 Query: 192 RLLLHAEMLTITHPAYGNSMTFKAP 216 + LHA + + H A S T AP Sbjct: 188 PMHLHARRI-LLHGAIQQSFTAPAP 211 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 20/232 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEH---KDSVMTRIQRDYPQAES---- 59 +P + L ++Y+D ++V++K + PG EH ++++ R S Sbjct: 75 SPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRP 134 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG++V A T+ A L + + KK+Y+A WG P P G++ + Sbjct: 135 GIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNIRV 194 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + + GKPA+TEYEV + + + + TGR+HQ+RVHM +GH I+G Sbjct: 195 KRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVHMSHIGHSIVG 254 Query: 178 DRFYASPEARAMAP----------RLLLHAEMLTITHPAYGNSMTFKA-PAD 218 D+ Y + M R LHA +L HP+ G + F + PAD Sbjct: 255 DQKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPAD 306 >UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacteria RepID=Q211J3_RHOPB Length = 501 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 106/212 (50%), Gaps = 11/212 (5%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--VHRLDMATSGVIV 72 +ILY+D +MV+NKP+GL G +M + RD + VHRLD T+G ++ Sbjct: 263 MILYEDADVMVLNKPAGLAVQGGSGTTRHVDLMLEVMRDAKGQKPRLVHRLDKETAGCLL 322 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 +A T+ A L FRER +K Y A V G P P +G + L + E G Sbjct: 323 IAKTRFAATALTGAFRERSARKVYWALVAGVPKPKQGRISTYLAKEESEDDTIMRIAEHG 382 Query: 133 KP----AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-- 186 A T Y VVE +A A V LKP+TGR+HQLR HM +GH I+GD Y + E Sbjct: 383 DEGASHAVTYYAVVETSASKLAWVSLKPVTGRTHQLRAHMAHIGHAIVGDPKYFNIENWQ 442 Query: 187 --RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + RL L A + I HP G ++ AP Sbjct: 443 LPGGLQNRLHLLARRIVIPHP-RGGTIDVSAP 473 >UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3Z2_HERA2 Length = 560 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 13/208 (6%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR----LEEHKDSVMTRIQRDYPQAESVH-RLDMATSGV 70 ILY+D+ I+V+NKP+G+ + + L + + ++ ++Q +Y ++H RLD TSGV Sbjct: 5 ILYRDEQILVINKPTGVATHAPQGDLALTDVERALRAQLQLEYL---AIHQRLDRDTSGV 61 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++ AL AA L F E +K Y A V+G P +G++D L + ++ Sbjct: 62 MLFALDPAANANLATAFAEHTIEKTYQALVYGVPIQTQGVIDAALAPAGDGMIQVASAHD 121 Query: 131 T-GKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 + A T Y V+ + D ++ L+P TGR+HQLRVH LGHPI+GD Y A Sbjct: 122 RRAQSAITHYRVLVSSPDQRFSLLELQPKTGRTHQLRVHCECLGHPIVGDPLYDVARA-- 179 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 APRL+LHA L THP + +AP Sbjct: 180 -APRLMLHASELRFTHPLTQQPLHIQAP 206 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 27/236 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------V 60 P+E L +LY+D H++V+NKP+GL P + +++ R+ +P+ E+ V Sbjct: 114 PEEGELEVLYRDAHMLVINKPAGLTVHPAP-SCPEGTLVHRLLHHFPELEAQEGFRPGIV 172 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++++ALT+ A L F R K+Y+A V G P G +D P + P Sbjct: 173 HRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIPEGDSGEIDAP-VGRHP 231 Query: 121 NRPKQKVCYETGKPAQTEYEVV---EYAADNTA--RVVLKPITGRSHQLRVHMLALGHPI 175 + G+ A + + V+ + T V ++ TGR+HQ+RVHM GHP+ Sbjct: 232 THKTRMAVVRGGREALSTWRVLLADPHGGGGTGWTLVAVRIHTGRTHQIRVHMQHTGHPL 291 Query: 176 LGDRFYA----------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 GD Y +P A R +LHA ++ HP G M F PADF Sbjct: 292 WGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVTGAPMQFTLPPPADF 347 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 20/223 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD-SVMTRIQRDYPQAESV------- 60 PQ + ++Y+DD+++V++KP+G++ P H D ++M + + +V Sbjct: 77 PQNIPIQVIYKDDYLIVLSKPAGMVVYP--CAGHPDGTLMNALAYHVKKLANVGAPFRPG 134 Query: 61 --HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 HRLD TSGV+VVAL +L F++RE KK+Y+A V+G G + P+ Sbjct: 135 IVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLR-GSGKITTPVGRA 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K + + K A TE+EV++ N + +K +TGR+HQ+RVH ++GHP++GD Sbjct: 194 IYDRKKMSIKSKKAKEAITEWEVIK-NFKNYTFLKVKILTGRTHQIRVHFSSIGHPVIGD 252 Query: 179 RFYASP------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + Y + R +LHA + + HP + F+A Sbjct: 253 KTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEA 295 >UniRef50_B5JHH9 Pseudouridine synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHH9_9BACT Length = 324 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 24/233 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-----PQAES---- 59 P+ P I+Y D+HI+VVNK +GL++VP E + + R+ DY P A++ Sbjct: 82 PKIPDAAIVYFDEHIVVVNKAAGLMTVP-HPESDETETLDRLVNDYLRIRDPDAKTNRAS 140 Query: 60 ---VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL--- 113 VHR+D TSG++V A T A+R L QFR +++Y+A V G L Sbjct: 141 LGVVHRIDKDTSGLVVFARTFLAKRALSEQFRAHSIERRYLAIVHGELKAQSIRTHLVRE 200 Query: 114 ---PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA 170 L P E G+ A T +VVE A T V + TGR+HQ+R+H+ Sbjct: 201 TGDGLRGSAPKGATNSEGEELGRLAITHVDVVERLAGATL-VSCRIETGRTHQIRIHLSE 259 Query: 171 LGHPILGDRFYASPEARAMAP--RLLLHAEMLTITHPAYGNSMTFK--APADF 219 +GHPI+G++ Y + P R +LHA L HP G +++++ A DF Sbjct: 260 IGHPIVGEKVYIRGFEGELIPANRAMLHAAELGFIHPGSGEAVSWQEEASKDF 312 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 12/212 (5%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVIV 72 IL++DD+++V+NKPSG G V+ ++ P+A E VHRLD TSGV++ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGG--SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLL 152 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET- 131 VA ++A R L Q R + +K Y+A V G + PL+ + ++ V + Sbjct: 153 VAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSE 212 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAP 191 GKP++T ++ +E ++ V P+TGR+HQ+RVH L GHPI D Y E Sbjct: 213 GKPSETRFK-IEERFEHATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYGYREFDQQLQ 271 Query: 192 -----RLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL LHA L HP G +M +AP D Sbjct: 272 GTGLHRLFLHAAALRFEHPNTGETMRIEAPLD 303 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 130/231 (56%), Gaps = 26/231 (11%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR-----IQRDYPQA 57 M + P + P L ++Y D +MVVNKP+GLLS P E DSV+TR + ++P Sbjct: 75 MPDGTPRRLP-LDVIYSDRCVMVVNKPAGLLSQPDVKGE--DSVVTRALGYAVDPEFP-P 130 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 + VHRLD TSGV+ +AL R L F+ R K+Y A V G P G +D+PL+ Sbjct: 131 QLVHRLDRNTSGVMALALDGPTTRALMECFKARRADKRYWAIVIGE-LPERGRIDVPLLK 189 Query: 118 DWPNRPKQKVCYE-TGKPAQTEYE-VVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 D K+ V + G+ A TEY+ + A + A V L +TGR+HQ+RVHM +GHP+ Sbjct: 190 D---ADKKLVRVDPKGERAVTEYKRLTSSGAFSLAEVHL--LTGRTHQIRVHMNHVGHPL 244 Query: 176 LGD----RFYASPEARAMA-PRLLLHAEMLTITH-PAYGNSM---TFKAPA 217 LGD F + + R++ R +LHA LT+ PA+ + + TF+APA Sbjct: 245 LGDVKYGDFGSKGQLRSLGVKRPMLHARSLTLNGLPAFLSHLEGKTFRAPA 295 >UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular organisms RepID=TRUC_PECCC Length = 376 Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 20/224 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVI 71 L I+YQD+H++ VNKPSG L L+ + V+ + RD +VHRLD TSGV+ Sbjct: 116 LEIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGVL 175 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL------ICDW---PNR 122 ++AL+ R L +QF + +K Y A V G+ +G++D L I D P++ Sbjct: 176 LLALSSEVARALSQQFESHQMQKTYHAVVRGY-VLDDGVIDYALTEELDKIADKFTNPDK 234 Query: 123 PKQKVCYETGKPAQTEYEVV--EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD-- 178 Q AQ E V Y + + LKP TGR HQLR HM + HPI+GD Sbjct: 235 APQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTA 294 Query: 179 ----RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R E+ RL+LHA L + HP G +T +A D Sbjct: 295 HGDLRHNRGMESHFSCGRLMLHASELQLNHPVSGQPLTLQARWD 338 >UniRef50_C7LR44 Pseudouridine synthase n=6 Tax=Bacteria RepID=C7LR44_DESBD Length = 243 Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 14/213 (6%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHK-------DSVMTRIQRDYPQAESVHRLD 64 P LVI+Y+D I+VVNKP+G+L++ E+ + D V + + VHRLD Sbjct: 14 PGLVIIYEDRDIIVVNKPAGMLTMATETEKTRTAYYALTDYVRKGNAKSRYRIFIVHRLD 73 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++ A T+ A+R L+ Q+ + K Y A V G A G++ L+ ++ Sbjct: 74 RETSGIVLFAKTEVAKRTLQDQWED--TTKIYAAVVHGQMGKASGMLSSHLVESGVHKVY 131 Query: 125 QKVCYETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 GK A+T + V+ E + V L +TGR HQ+RV M GHPI GD+ Y Sbjct: 132 ATRDAALGKLARTAWTVLKERGGYSLLDVTL--LTGRKHQIRVQMADAGHPIAGDKKYGV 189 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 RL LHA +T HP G SMT AP Sbjct: 190 KG--DTFSRLALHARSITFAHPFSGRSMTLDAP 220 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 13/210 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVH-------RLDMA 66 L ILY+D+H++V+NK + S+P R EH + D+ Q V RLD Sbjct: 66 LDILYEDEHVLVINKQPYVSSIPSR--EHPSGSIANGIIDHYQTTGVRATVHLVTRLDRD 123 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++VA + A L + K++Y A V G + EG VD P I P+ ++ Sbjct: 124 TSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAP-IGRHPDSIIER 182 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 G+ A T + V A D+ V L+ TGR+HQ+RVHM LGHP+ GD Y Sbjct: 183 TVTPDGQKAVTHF-YVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGG--T 239 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 R R LH+E L+ HP +M F AP Sbjct: 240 RQEIGRQALHSEHLSFIHPLTQENMRFHAP 269 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 8/210 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 ILY+DD +M++NKPSG+ G L+ + ++ E VHR+D TSG+++VA Sbjct: 94 ILYEDDALMLINKPSGVAVHGGSGLQFGLIEGLRALRPKEKSLELVHRIDRDTSGLLLVA 153 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-GK 133 ++ R L Q R +E KQY+A V G V+ PL + ++ V + GK Sbjct: 154 KKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEGK 213 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI-----LGDRFYASPEARA 188 + T + + + + T V P+TGR+HQ+RVH L GHPI GD + + +R Sbjct: 214 ASLTRFRIQQRYKEGTL-VEASPVTGRTHQIRVHALHAGHPIAKDPKYGDTDFDNTMSRL 272 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL LHA L HP G + F+AP D Sbjct: 273 GLNRLFLHAWQLRFLHPVTGKEVAFEAPLD 302 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 113/220 (51%), Gaps = 16/220 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR-----------LEEHKDSVMTRIQRDYPQA 57 P++ L ILY+D I+V+NK G++ P L KD ++ I + + Sbjct: 75 PEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKD--LSGINGEI-RP 131 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSGV+V A AA +L Q R + + Y A V G+ G++ + Sbjct: 132 GIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGR 191 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K + +E GKPA T + V+E T V + TGR+HQ+RVHM ++GHP+LG Sbjct: 192 HPTDRKKMAIVHEHGKPAVTHFRVLERFGAYTL-VECRLETGRTHQIRVHMASIGHPVLG 250 Query: 178 DRFYASPEARAMAPR-LLLHAEMLTITHPAYGNSMTFKAP 216 D Y +A A + LH+ LT+THP MTF AP Sbjct: 251 DPKYGPRKACPFAIKGQALHSLQLTLTHPRTREVMTFTAP 290 >UniRef50_D1RB93 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB93_9CHLA Length = 283 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 10/206 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-QAESVHRLDMATSGVIVVA 74 ILY+D H++V+ KP+GLLSV ++ K + +R P + VHRLD TSGV++ A Sbjct: 70 ILYEDAHLVVIEKPAGLLSVATNFDKAKTAHAFLKERYRPRKVYVVHRLDQDTSGVMLFA 129 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 LT A LK F + + ++Y A V G + EG L D K V + T P Sbjct: 130 LTGEAFFGLKALFADHDIDREYTAVVHGKMTQQEGTWQSYLYED-----KAYVVHSTQDP 184 Query: 135 AQTEYEVVEY----AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA 190 + E + + A + + + LK TG+ +Q+RVH G PI+GD+ Y + Sbjct: 185 DKGELAITHFKTVEARTHFSLLNLKLETGKKNQIRVHCEDHGFPIVGDKKYGGEGESHIT 244 Query: 191 PRLLLHAEMLTITHPAYGNSMTFKAP 216 RL LHA L HP Y M+F +P Sbjct: 245 KRLCLHAHHLGFVHPIYKKEMSFDSP 270 >UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae RepID=C8PW17_9GAMM Length = 365 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 18/219 (8%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 I+Y+D+ ++V+NKPSG+ G E R E VHR+D TSG++++A Sbjct: 141 IVYEDEGLIVLNKPSGMAVHGGSGESFGVIEAMREATGKKYLELVHRIDKDTSGLLMIAK 200 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC----------DWPNRPKQ 125 ++ + L+ RE+ +K Y+ V G S +D PL+ R K Sbjct: 201 KRSTLKTLQEHLREKTLQKTYLCLVVGWISSETQTIDKPLLKYTLPATQEGKSGERRVKV 260 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVL---KPITGRSHQLRVHMLALGHPILGDRFYA 182 V E KP+QT+ V++ N +V L KP+TGR+HQ+RVH+ ++GHP+LGD Y Sbjct: 261 DVKSEDSKPSQTQINVLQKFELNGQKVSLIEAKPLTGRTHQIRVHLASIGHPLLGDDKYN 320 Query: 183 SPEARA--MAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A+ M RL LHA L I P Y ++T + P D Sbjct: 321 PNVAKGDKMVRRLCLHAYQLAI--PEY-ETITAELPVDM 356 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 114/232 (49%), Gaps = 31/232 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLS--VPGR---------LEEHKD-SVMTRIQRDYPQA 57 Q+ L ILY+D I+ VNKP G++ PG L KD S + +QR Sbjct: 79 QDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQR----P 134 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSGVI+ A AA L Q +R +K Y+A G G++DLPL Sbjct: 135 GIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLAR 194 Query: 118 DWPNRPKQKVCY-ETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPI 175 +R + V G+ A + + V E D T +V +K TGR+HQ+RVH+ AL HP+ Sbjct: 195 HPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIK--TGRTHQIRVHLAALHHPV 252 Query: 176 LGDRFYASPEARAMAP-----------RLLLHAEMLTITHPAYGNSMTFKAP 216 +GD Y + R P R +LHA +++ THP G +T AP Sbjct: 253 IGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAP 304 >UniRef50_Q5Z213 Pseudouridine synthase n=2 Tax=Actinomycetales RepID=Q5Z213_NOCFA Length = 260 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 26/209 (12%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 +L +DD ++ +NKP+G+ SV G E H ++ + VHR+D TSG++++A Sbjct: 13 LLAEDDAVLALNKPAGI-SVTG--ERHDTDIVELAAGAGERLFPVHRIDKVTSGLVLLAK 69 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR-----PKQKVCYE 130 AA L RQF +R +K Y+A V G P G+++LPL NR P++ + E Sbjct: 70 DLAAHGTLTRQFTKRTAEKAYLAVVAGGGLPDRGVIELPLSVGRKNRVRIAAPRESIRAE 129 Query: 131 TGK--------------PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 G+ P++TE+ + AD T + L+P+TGR HQ+RVH+ +GH I+ Sbjct: 130 DGRWFVDDADLLAVKNYPSRTEFVTLARTADRTV-LALRPVTGRRHQIRVHLAWIGHAIV 188 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHP 205 GD + + A PR LH+ L + P Sbjct: 189 GDPLF---DKSAAHPRAHLHSWRLVLDAP 214 >UniRef50_C6VIZ5 Pseudouridine synthase n=3 Tax=Lactobacillus plantarum RepID=C6VIZ5_LACPJ Length = 300 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 6/216 (2%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLS---VPGRLEEHKDSVMTRIQRDYPQAESV 60 NY ILYQ+ ++VV+KP+G+ S PG + + +Q V Sbjct: 74 SNYIAAATAPATILYQNSDLLVVDKPAGVKSHPNQPGETGSILNDLAATLQPTQQVPYMV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG ++VAL L R +++ ++ Y A V GH + G P+ D Sbjct: 134 HRLDQMTSGAMLVALNPVVVPILDRLISDKQIRRTYYAWVRGHFATPTGHFTAPIGHDAT 193 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 ++ K+ V +PA T+YEV A + V L TGR+HQLRVH+ A HPI+GD Sbjct: 194 DKRKRWVNTADAQPALTDYEVCATTAHQSL-VKLTLHTGRTHQLRVHLAASDHPIIGDPL 252 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y S +A + APRL+LHA++L + P +T AP Sbjct: 253 YDS-QAES-APRLMLHAQLLDLQLPFSTTRVTVPAP 286 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 29/236 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------- 59 P++ L I+Y+DD I+V+NKP L+ PG K ++ + + + S Sbjct: 73 PEDIPLNIVYEDDDIVVINKPRNLVVHPGN-GVSKGTLAAALLYHFKENLSTVNGPLRPG 131 Query: 60 -VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD T G++VVA AA R L Q R + Y A VWG P EG +D P+ + Sbjct: 132 IVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRDLEGTIDAPIGRN 191 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR K V + GK ++T Y ++ A T + L+ +GR+HQ+RVH GHP++GD Sbjct: 192 PKNRLKMAVV-KGGKESRTHYVAKQFFAIATL-LELQLESGRTHQIRVHSRYTGHPVVGD 249 Query: 179 RFY----------------ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + +AP LL A + + HP +TFK P + Sbjct: 250 PLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLTFKVPME 305 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 22/227 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM--------TRIQRDYPQAESVHRLDM 65 L I+Y D ++V+NKP+GL P + V R+ D + VHRLD Sbjct: 83 LDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTDRQRPGIVHRLDK 142 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 T+G++V AL + A+ +L QF R K Y+A V G EG++++PL D +R + Sbjct: 143 DTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINVPLARDQQSRARV 202 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDRFYASP 184 E G+ A+T Y+V++ +V ++ TGR+HQ+RVH L HP+LGDR Y Sbjct: 203 APSRE-GRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIRVHFSHLNHPVLGDRIYGGT 261 Query: 185 E----------ARAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 + +A R LLH+ L I HP + F + P DF Sbjct: 262 DWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSRQWLEFISRPPRDF 308 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 14/216 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVHRLDM 65 V+ Y+DD ++VV+KP G++ PG V + R P + VHR+D Sbjct: 89 FVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGLLARGTPLCTLAGALRPGVVHRIDK 148 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG++V A + A R L FR + +++YVA G EG +D+P+ D +R + Sbjct: 149 DTSGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAHGRMPHREGTIDMPIARDPADRQRM 208 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V + GK A T +EV+E A + + L+ TGR+HQ+RVH+ A+GHPI GD Y P Sbjct: 209 AV-RQGGKRAVTHFEVLESFA-KYSYLRLRLETGRTHQIRVHLAAIGHPIAGDPVYG-PR 265 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 LHA L THP G + F++ P+D Sbjct: 266 HTLPIDGQALHARTLGFTHPD-GRRLRFESAVPSDM 300 >UniRef50_B1ZRU1 Pseudouridine synthase n=2 Tax=Opitutaceae RepID=B1ZRU1_OPITP Length = 268 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 37/237 (15%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA-ESVHRLDMATSGVIVVA 74 IL++DD ++ +KPSGLL P R ++ ++++M + + +VHRLD TSG+++ A Sbjct: 6 ILFEDDAMIAFDKPSGLLIAPDRWDKQRENLMGLVHARFGHGVANVHRLDADTSGLLLCA 65 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHP------------SPAEGL-----VDLPLIC 117 TK A L QF+ + +K Y++ V P A GL VDL L Sbjct: 66 KTKPALDFLSGQFQAKTVQKTYLSLVVVLPPEEAMKVVKPIRDDAGGLPDAFQVDLALGQ 125 Query: 118 DWPNRPKQKVCY-ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 D + +V GK T++ V+E A V P TGR+HQ+RVH+ A G PIL Sbjct: 126 DERQPGRMRVFKGRGGKDCVTDFRVLERFG-RFALVSCHPQTGRTHQIRVHLAAAGAPIL 184 Query: 177 GDRFYASPEARAMAP-----------------RLLLHAEMLTITHPAYGNSMTFKAP 216 D FY +PE + + RL LHA LT HPA +T +AP Sbjct: 185 NDPFYGNPEIKLLLSDLKRRYKGRDEEKPLIDRLALHASELTFRHPATRELLTLQAP 241 >UniRef50_C8PQT2 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQT2_9SPIO Length = 246 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 104/226 (46%), Gaps = 25/226 (11%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE-------SVHRLDMA 66 ++Y DD ++ VNK +GLL R + + IQ++ PQ +VHR+D Sbjct: 6 FTLIYADDDMVAVNKAAGLLVAADRWDAEAPRLDLLIQKELPQIAPSCNKLYAVHRIDKD 65 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++ AL A R L F+ RE KK Y + G S + VDLPL D + Sbjct: 66 TSGILLYALNAEAHRTLNTAFQNREIKKTYRLLIHGRVSEEQFTVDLPLRADGDALHRTV 125 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE- 185 V GK A T + V+E + + P+TGR+HQ+R H+ A G+PI+ D Y S + Sbjct: 126 VDKRRGKEAVTHFTVLE-TFRQFSLLEACPVTGRTHQIRAHLAAAGYPIVCDSLYGSGKP 184 Query: 186 ----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + + RL LHA L HP G F A Sbjct: 185 VLLSELKQRWRGDVYTEQPLIGRLALHAYRLEGVHPRSGQPFAFTA 230 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 27/224 (12%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGR--LEEH-------KDSVMTRI--------QRDYPQA 57 +I+++D ++ V+NKPSG+L P EE+ ++++++ I ++ +A Sbjct: 76 LIIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILANPPKNFEKGITRA 135 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSGV+++A + + F RE K Y A V G +G++++P+ Sbjct: 136 GLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVVPDDKGIINVPIGR 195 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + K E G+ A TEY V++ + + + L P+TGR++QLRVHM LG+P+LG Sbjct: 196 VTGGKIK---ASELGREAVTEYSVLQRK-ETVSLMKLHPVTGRTNQLRVHMSWLGYPVLG 251 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 D Y A APRL+LH++ HP + F P DF Sbjct: 252 DWLYKG----ATAPRLMLHSKSAEFEHPFTSKPVKFTVAPPKDF 291 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 3/174 (1%) Query: 15 VILYQDDHIMVVNKPSGLLSVPG-RLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 +++Y+DD I+ +NKP+GL G + H D ++ + VHRLD T GV+++ Sbjct: 96 LVIYEDDDILALNKPAGLAVQGGAKTLIHIDGMLDVFGEGEARPRLVHRLDRDTGGVLLL 155 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL-ICDWPNRPKQKVCYETG 132 A ++A L F++ K Y A G P P G +D+ + P R K + E G Sbjct: 156 AKSRAVAATLSLAFQQHRIGKTYWAITKGVPHPLFGRIDMRIEKAGEPGREKMR-GTEQG 214 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 + A T+Y+ VE A A + L+P TGR+HQ+RVH+ A+G PI+GDR Y A Sbjct: 215 QSALTDYQTVETAGQKAAFLALRPHTGRTHQIRVHLSAIGTPIVGDRKYGGAGA 268 >UniRef50_A4XKV9 Pseudouridine synthase n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XKV9_CALS8 Length = 292 Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR---LEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 IL++D + VNKPSG+ S P + + ++V + + ++RLD TSG++V Sbjct: 79 ILFEDQFFLFVNKPSGIPSHPSKGHYFDTLANNVEWYLNSQGVTSHIINRLDKDTSGIVV 138 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 A + +F +R +K Y+A V G + G ++ P+ N ++ E G Sbjct: 139 FAKNSYFHSIVSSEFEKRTIEKTYIAVVDGILTKKSGFIEKPI--SRSNDGIKREINEDG 196 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 A T YEVV+Y +N + + LKPITGR+HQLRVH+ ++G+PI+GD Y + + + Sbjct: 197 DYAITYYEVVDYK-NNYSILKLKPITGRTHQLRVHLASIGYPIVGDVLYGTGKNKNFP-- 253 Query: 193 LLLHA 197 LLLHA Sbjct: 254 LLLHA 258 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 115/240 (47%), Gaps = 37/240 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP------GRLEEHKDSVMTRIQRDYPQAES--- 59 P++ + ILY+DD +MV++K +G++ P G L ++++ + +D + + Sbjct: 72 PEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTL---ANAILHHLGKDADELDKTEM 128 Query: 60 ----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHRLD TSG+I++A A +L RQF R+ +K Y A VWG P G + + Sbjct: 129 RPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNI 188 Query: 116 ICDWPNRP-KQKVCYE--TGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLAL 171 NR YE GK A T+Y+VVE + V L TGR+HQ+RVH+ L Sbjct: 189 GRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLH--TGRTHQIRVHLQHL 246 Query: 172 GHPILGDRFYASPEARA---------------MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 GH ILGD Y R + R LHA+ L P G ++F AP Sbjct: 247 GHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSAP 306 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 16/216 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------VHRLDM 65 L ++Y+D+H++VV+K +G++ P V + R P AE VHRLD Sbjct: 83 LDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRAGLVHRLDK 142 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG++VVA + AA R L R+ ++Y A WGH + V+ P+ D +R + Sbjct: 143 DTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIARDPRDRTRM 202 Query: 126 KVCYETGKPAQTEY-EVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + ++GK ++T++ + + + + R L TGR+HQ+RVH+ + GHP++GD Y Sbjct: 203 AIV-QSGKASRTDFTRLARFDSVDLLRAHLH--TGRTHQIRVHLASTGHPVVGDDTYGGG 259 Query: 185 EARAMA----PRLLLHAEMLTITHPAYGNSMTFKAP 216 R +A R LHA L HP G+ + ++P Sbjct: 260 GGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSP 295 >UniRef50_A6G930 Pseudouridine synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G930_9DELT Length = 356 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 34/241 (14%) Query: 9 PQEPWLV----ILYQDDHIMVVNKPSGLLSVP-GRLEEHKDSVMTRIQRDYPQA--ESVH 61 P+EP ++ ++++D ++V++KP L P R H + + R +R P+ E H Sbjct: 98 PEEPAVILDYGVVHEDPDVLVLDKPGNLPVHPTARYHRHTLTALMR-RRLGPKHGWEMAH 156 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEG--LVDLPLICDW 119 R+D TSGVI+ KA+ ++K F RE K+Y+A V G EG L+D+PL Sbjct: 157 RIDRETSGVIIFGRRKASGPKIKGSFFRREVHKEYLAIVLGRLELPEGPRLIDMPLGSAV 216 Query: 120 PNRPKQKV----CYETGKPAQTEYEVVEYAADNTARVVLK---PITGRSHQLRVHMLALG 172 ++ K+ E G PAQT EV+ + + L P TGR+HQ+RVH+ +G Sbjct: 217 GSKIMIKMGPRPVDEGGLPAQTTIEVLAHGEHRGQPITLVRCLPRTGRTHQIRVHLAEIG 276 Query: 173 HPILGDRFYASP-----------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 HPILGD+ YA+ EAR R LHA L++ HP G+ + + A Sbjct: 277 HPILGDKLYAAEEDEFLAVVEDGEPVAELEARLGLWRQALHARALSLPHPTTGDGVRYVA 336 Query: 216 P 216 P Sbjct: 337 P 337 >UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A1K5H7_AZOSB Length = 260 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 24/213 (11%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVI 71 L ILYQD+H++ ++KPSGLL L+ H++ ++ RD VHRLD TSGV+ Sbjct: 2 LEILYQDEHLVAIHKPSGLLVHRSALDAHEERFAVQLLRDQLGRHVHPVHRLDKGTSGVL 61 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE- 130 V AL + L QF R +KQYVA V GHP+ A G +D PL + P + V + Sbjct: 62 VFALDRDTAGRLATQFETRAVRKQYVAIVRGHPAEA-GTIDHPLSRRFD--PVEHVAEDK 118 Query: 131 --TGKPAQTEYE----------VVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +PA T + V Y A + L+P TGR HQ+R H+ + HPI+GD Sbjct: 119 VFAPQPAITRFRRLATAELPWAVDRYPTSRYALLALEPETGRRHQIRRHLKHISHPIIGD 178 Query: 179 RFYASPEARAM------APRLLLHAEMLTITHP 205 + + M + R+LL + + HP Sbjct: 179 STFGKGKHNRMFQAHFGSERMLLACTDIELRHP 211 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 104/216 (48%), Gaps = 9/216 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP--GRLEEHKDSVMTRIQRDYPQAES------V 60 P+ L + ++D ++VVNKP GL+ P G + + RD V Sbjct: 76 PEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++VA AA L Q ++R ++Y A V G P G VD P+ Sbjct: 136 HRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRHPR 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R + V +G+ A+T Y VV D + + L TGR+HQ+RVHM +GHP++GD Sbjct: 196 DRQRMAVTPRSGRAARTHYRVVRR-FDKFSLLELTLDTGRTHQIRVHMAHVGHPLVGDLK 254 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y LHA L HP G + F+AP Sbjct: 255 YGHARPELGLEGQFLHAGTLGFRHPRTGEVLVFEAP 290 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 16/202 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR---IQRDYP--QAESVHRLDMATS 68 L I+Y+D+H +++NKP+G S+P + + + + I++DYP Q V RLD TS Sbjct: 76 LDIVYEDEHFLILNKPAGYASIPSAIHSNTIANFIKAYYIKQDYPNKQVHIVTRLDRDTS 135 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS-PAEGLVDLPLICDWPNRPKQKV 127 G+++ A A L +Q ++R K+Y A V G P +G + P+ R + Sbjct: 136 GLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPI-----GRTDDSI 190 Query: 128 CYET----GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 T GK A+T Y+V+ +N + V + TGR+HQ+RVH LG P+LGD Y Sbjct: 191 ITRTVTPKGKYAKTSYKVIARYPENVSLVDITLHTGRTHQIRVHFAHLGFPLLGDDLYGG 250 Query: 184 PEARAMAPRLLLHAEMLTITHP 205 M R LH L+ THP Sbjct: 251 RLDLGMT-RQALHCHHLSFTHP 271 >UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H073_UNCTG Length = 238 Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 26/220 (11%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--SVHRLDMATSGVIVV 73 I+YQD++I+VVNKPSG+ +PGR +++ + I R+ + + VH +D SGV+V Sbjct: 7 IIYQDENILVVNKPSGMFVIPGR-NIYENKTLVEILRNQLKQKLWVVHIIDRDASGVLVF 65 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A R + QF + +K+Y+A + G EG ++ PLI N TGK Sbjct: 66 AKNPETHRNISVQFENSKIRKKYIALLSGVLEENEGTINKPLIISGKNVR----IDITGK 121 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD--------------- 178 + T+++V+E T L P+T + HQ+R+H +LGHP+ D Sbjct: 122 ESITDFKVLENFRSYTLVNAL-PLTVKRHQIRIHFWSLGHPLAIDGEYGTLDPIFLSSFK 180 Query: 179 RFYASPEARAMAP---RLLLHAEMLTITHPAYGNSMTFKA 215 R Y + + P RL LHA LT+ P G TF+A Sbjct: 181 RGYKIKKGKTENPLISRLTLHAAALTLILPGSGEEKTFEA 220 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 120/225 (53%), Gaps = 21/225 (9%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGR----------LEEHKDSVMTRIQ 51 G+ N +P ++ L ++Y+DD +++V+KP ++ P + + H+ +I Sbjct: 71 GINNIDP-EKLLLCVIYEDDDLLIVDKPKNMVVHPTKNVLSGTLANAISNHQ-----KIN 124 Query: 52 RDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 + V+RLDM T+G++++A + ++L +Q E +K Y+ V GH EG++ Sbjct: 125 NQNYKIRFVNRLDMDTTGLLIIAKNSYSHQQLAKQMDEGILEKIYIVVVNGHLDSKEGVI 184 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + + D + ++ GK ++T+Y+V+E +N + + +K +TGR+HQ+RVH+ + Sbjct: 185 EDSI--DLNDDGIKRELSTFGKISKTKYKVIE-EFNNVSVLEIKLLTGRTHQIRVHLSSF 241 Query: 172 GHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 G+ I+GD Y + + R LH+ +L HP +M ++ Sbjct: 242 GNNIIGDTLYG--KTADLIERQALHSHILRFIHPITKENMEIRSK 284 >UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID=B9DS29_STRU0 Length = 301 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 20/219 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYP--QAESVHRLDMA 66 L I+Y+DDH +V+NKP G S+P + H +++ I +++YP Q V RLD Sbjct: 76 LDIVYEDDHFLVLNKPVGYASIPSAI--HSNTIANFIKAYYFEQNYPNKQVHIVTRLDRD 133 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++ A A L +Q ++R +K+Y A V G+ L D I + R K Sbjct: 134 TSGLMLFAKHGYAHARLDKQLQKRSIEKRYFALVSGNGQ----LPDFGEIVEPIGRSKDS 189 Query: 127 VCYET----GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + T GK A+T YEVV A+N V +K TGR+HQ+RVH +G P+LGD Y Sbjct: 190 IITRTVDPMGKYAKTTYEVVARFAENVHLVDIKLHTGRTHQIRVHFSHIGFPLLGDDLYG 249 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSM--TFKAPADF 219 + R LH L+ +P N T DF Sbjct: 250 GRMDLGI-ERQALHCHFLSFFNPFTENESIHTINLTEDF 287 >UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JWI8_AGRVS Length = 330 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 16/215 (7%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVM---TRIQRDYPQAESVHRLDMATSGV 70 ++L++D+ + V+NKP+GL G L H D ++ T + + P+ VHRLD TSGV Sbjct: 96 MLLHEDEKVFVLNKPAGLAVQGGSGLNRHIDQMLEAWTSKKGEKPRL--VHRLDRDTSGV 153 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +VVA T+ A ++L FRER+ KK Y A V G P + + ++ + + Sbjct: 154 LVVARTRGAAQKLTAAFRERDTKKTYWALVKGVPRKHDDKISTWVVKEQTEDGDRMRIAR 213 Query: 131 TGKP----AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 G+ A + Y V+E AA + A + ++P TGR+HQLR+H L +GHPI+GD Y + Sbjct: 214 HGEDGADHAVSYYRVLETAAQSLAWLEMEPYTGRTHQLRLHALHIGHPIIGDPKYYIDDP 273 Query: 187 R-----AMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + RL LHA + I HP G + AP Sbjct: 274 NWDFPGGVQKRLHLHARHIDIPHPD-GGRLRITAP 307 >UniRef50_B7P2L1 Ribosomal pseudouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7P2L1_IXOSC Length = 263 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 27/239 (11%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA----- 57 ME+ + E + +L+ H +VV+KP+ ++ R +EH +V T ++R +P+ Sbjct: 1 MEDNHGISERSICVLHLSPHFVVVDKPADVVINTQRPDEHPVTVETLLKRLHPELVDTGV 60 Query: 58 ----ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 HRLD +TSGV+ +AL K + R +R F +R KK YVA + GH LVD Sbjct: 61 HHSFRFCHRLDFSTSGVLCLALHKQSARSAQRAFHQRLAKKYYVAILEGHVRDDHVLVDS 120 Query: 114 PLICDWPNRPKQKVCYE------TGKPAQTEYEVV---EYAADNTARVVLKPITGRSHQL 164 P+ D + K+C + + AQT V+ +V+L+P+TGR HQL Sbjct: 121 PIGEDKRPQHSHKMCTADKDYCVSPRGAQTRLLVLWRGLLKGRPATKVLLRPVTGRRHQL 180 Query: 165 RVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP----ADF 219 RVH +LGH I+GD Y A + R+ LHA L + P ++ + P ADF Sbjct: 181 RVHCASLGHTIVGDFTYGED---ASSRRMFLHACRLVL--PTEVETLDVETPDPFAADF 234 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 100/200 (50%), Gaps = 12/200 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES--------VHRLDM 65 L ++Y+DD I+V++KP+G++ P V I R YP VHRLD Sbjct: 91 LRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIAR-YPDLLKQPTDRPGIVHRLDK 149 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+I+VA L+ Q + R+ K+Y G P EG ++ P+ D +R K Sbjct: 150 DTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGRIEAPIGRDLRDRTKM 209 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V GK A TEY ++ T + +PITGR+HQ+RVH A+GHPI GD Y + Sbjct: 210 SVI-AGGKEAVTEYSTIQSLGKYTL-AIARPITGRTHQIRVHFAAIGHPIAGDPIYGNCR 267 Query: 186 ARAMAPRLLLHAEMLTITHP 205 + R LHA L + P Sbjct: 268 LEGLN-RQFLHASRLGVVMP 286 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 8/218 (3%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSV-----MTRIQRDYPQAE 58 + Y P L I+Y+D H++V+NKP+ +L P +E+ V R Q +Y Sbjct: 83 KTYYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNLVR 142 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 +HRLD T+G++++A + A + QF+ ++Y+A V G+ + ++ P+ Sbjct: 143 PIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGKT 202 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + K+KV + GK A T +VV+ + + +K TGR+HQ+RVH+ LGHP+LGD Sbjct: 203 RDSLIKRKVDHTLGKRAVTHIKVVK-PGGLISLIRVKLETGRTHQIRVHLSHLGHPLLGD 261 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y + + R LH+ +T P +TFKAP Sbjct: 262 TLYGGED--ILIKRPALHSYKVTCCLPFKHKEVTFKAP 297 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 39/250 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLL----------SVPGRLEEHKDSVMTRIQR-----D 53 P+ L ++++DDH++VVNKP G++ S+ L H + R D Sbjct: 98 PENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMID 157 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 P+ VHR+D TSG++V+A AA+ L+ QF R +++Y+A V G P+ G +D Sbjct: 158 VPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDA 217 Query: 114 PLICDWPNRPKQKVCY-ETGKPAQTEYEV-VEYAADNTARVVLKPITGRSHQLRVHMLAL 171 P+ D +R K + TG+ A + + V N + V + TGR+HQ+RVH + Sbjct: 218 PIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHAREM 277 Query: 172 GHPILGDRFY--------------------ASPEARAMAPRLLLHAEMLTITHPAYGNSM 211 GHPI+GD Y A+ E A R +LHA L HP G + Sbjct: 278 GHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTGEEI 337 Query: 212 TFKA--PADF 219 +F P DF Sbjct: 338 SFAVEPPPDF 347 >UniRef50_D2R760 Pseudouridine synthase, RluA family n=2 Tax=Planctomycetaceae RepID=D2R760_9PLAN Length = 603 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%) Query: 16 ILYQDDHIMVVNKPSGL-LSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 ++Y+D+ I VV+KP+ L L GR + + R D + VHRLD TSG+++ A Sbjct: 381 VVYEDEAIAVVHKPAPLPLHASGRFHRNTLEWILREIYDPQKPRPVHRLDANTSGLVLFA 440 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 T+ + L++QF + + +K Y+A V GHP + P+ + + V E G P Sbjct: 441 RTRHFAKLLQQQFTQGKVEKFYLALVSGHPVEDRFVSTAPISAEAGVFGSRSVDEEAGLP 500 Query: 135 AQTEYEVV--EYAADN--TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA 190 A+T +EV+ AD A V +PITGR++Q+RVH+ LGHPI+G++ Y + + Sbjct: 501 AETRFEVLARTTTADGKPVALVRCQPITGRTNQIRVHLWQLGHPIMGEQSYLADQKHGTT 560 Query: 191 -------PRLLLHAEMLTITHPAYGNSMTFKA 215 P L L A L+ HP MTF + Sbjct: 561 QTHTVDDPPLCLLAHQLSFQHPVSRERMTFTS 592 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 106/234 (45%), Gaps = 29/234 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR-----------LEEHKDSVMTRIQRDYPQA 57 P L I+Y+DD ++++NKP+G++ PG + +KDS+ T P Sbjct: 77 PYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDELRPGI 136 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHR+D TSG+IV+A L QF E + Y +WG P+ G +D + Sbjct: 137 --VHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITR 194 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVL---KPITGRSHQLRVHMLALGH 173 NR +V GK A T Y+ +E + D T + L + TGR+HQ+RVHM +G+ Sbjct: 195 SSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQIRVHMTHMGN 254 Query: 174 PILGDRFYASPEARAMA------------PRLLLHAEMLTITHPAYGNSMTFKA 215 I+GD Y + R LHA+ L HP M F + Sbjct: 255 SIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTS 308 >UniRef50_C1E6N6 Pseudouridine synthase n=2 Tax=Micromonas RepID=C1E6N6_9CHLO Length = 363 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 29/226 (12%) Query: 16 ILYQDDHIMVVNKPSGLL-----SVPGRLEEHKD-----SVMTRIQRDYPQAESV---HR 62 ++++D VVNKP + PG++ SV ++R YP ++V H+ Sbjct: 132 LVHEDADYAVVNKPWCVRLDTPRGWPGKVRFTPKYPGDLSVEDWLERRYPDWDTVRFCHQ 191 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD ATSGV+V A K A + FRER +K Y+A V+GHP E VD+P+ D P+ Sbjct: 192 LDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGHPEQDEWTVDVPMGRD-PDD 250 Query: 123 PK---QKVCYETGKPAQTEYEVVEYAADN---------TARVVLKPITGRSHQLRVHMLA 170 PK ++V E GK +T + V++ N ++V + P+TGR HQ+R+H+ Sbjct: 251 PKGFRERVDPEHGKACETRFRVLKRGRLNLRGKFEGVPVSKVEVTPVTGRRHQIRLHLQF 310 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 GHPI+GD Y+ + R LHA LT+ +M F AP Sbjct: 311 SGHPIVGDNAYSQD---TDSFRTFLHAHKLTLPFDEPRGTMQFVAP 353 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 35/237 (14%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGR--------LEEHKDSVMTRIQRDYPQAESVHRL 63 L ILY+DD I+V+NKP+GL+ PG L H + ++ I + VHRL Sbjct: 90 LDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSIN-GVKRPGIVHRL 148 Query: 64 DMATSGVIVVALTKAAERELKRQF----REREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 D T+GV+VVA A ++L QF + K+ Y A VWG P P G+++ PL Sbjct: 149 DKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCK 208 Query: 120 PNRPKQKVCY---ETGKPAQTEYEVVE-YAADNTARVVLKPI---TGRSHQLRVHMLALG 172 NR ++ V +T A T Y+ +E Y ++ V L TGR+HQ+RVHM G Sbjct: 209 SNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKG 268 Query: 173 HPILGDRFYA-------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 +P++GD Y + A R LHA L+ +HP M F+ P Sbjct: 269 NPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVP 325 >UniRef50_C8W9Q3 Pseudouridine synthase n=2 Tax=Atopobium RepID=C8W9Q3_ATOPD Length = 246 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 21/222 (9%) Query: 14 LVILYQDDHIMVVNKPSGLL---------SVPGRLEEHKDSVMTRIQRDYPQAESVHRLD 64 L LYQDD+++ VNKP+G++ S+ + E ++ + + D Q ++++RLD Sbjct: 10 LEFLYQDDYLLAVNKPAGMIVHSDGTNEPSLTDLVCEKLCALESSNKIDLSQVQALNRLD 69 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 T+G+++ +L K + + + +E K+Y+A V G + L+D + D + K Sbjct: 70 KETTGIVLFSLKKETQPQFDQLIASKELSKEYLAVVKGDFGLNKLLIDKAIGKDRHDAQK 129 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARV----VLKPITGRSHQLRVHMLALGHPILGDRF 180 ++ +TGKP+QTE +++ A+ ++ ++ +TGR HQ+RVH+ +LG P++GD Sbjct: 130 MRIS-DTGKPSQTEVRLIKVASSAQGQIQSLLLVNLLTGRKHQIRVHLSSLGFPLVGDVL 188 Query: 181 YASPEARAMAPR-------LLLHAEMLTITHPAYGNSMTFKA 215 Y + + L+LHA + HP G + K Sbjct: 189 YGGMSSLQRKTKKKHRPQPLMLHAYRIGFIHPVTGAKIVIKT 230 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 10/213 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV---------HRLD 64 L ILY+D+ ++V+NK G++ PG V + Q SV HRLD Sbjct: 80 LDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFHCGEQLRSVGDPERPGIVHRLD 139 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSGV+V A ++ A L+++ + ++ Y+A V G G++ LPL +R K Sbjct: 140 KDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQMEGDTGVIRLPLGRSTKDRMK 199 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 V +ETG+PA T + V+EY + + + K TGR+HQ+RVHM + H ++ D Y Sbjct: 200 WDVLHETGRPAVTHFHVIEYLP-HYSWIECKLETGRTHQIRVHMAHIRHAVVNDPLYGWK 258 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 + LH+ L + HP G M F+AP Sbjct: 259 KDHFPIKGQALHSHTLELCHPITGEVMHFEAPV 291 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 110/227 (48%), Gaps = 23/227 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----DYPQAES----- 59 P+ L +LY+D+H++ VNKP G+++ P V + R + P A Sbjct: 92 PEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYR 151 Query: 60 ---VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA---RVWGHPSPAEGLVDL 113 VHRLD TSGVIVVA T A L F++R K Y+A +W P V+ Sbjct: 152 PGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVS--VNA 209 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVL----KPITGRSHQLRVHML 169 P+ R + V + AQT + + D R + +P TGR+HQ+RVH+ Sbjct: 210 PVGRHPTARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTHQIRVHLA 269 Query: 170 ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 LG PILGD Y A A+ PR LHA+ LT+ HP G ++ AP Sbjct: 270 HLGSPILGDAVYG--RASAVMPRHALHAQFLTLPHPVTGETLHLHAP 314 >UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C6VVP1_DYAFD Length = 228 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 17/215 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD------YPQAESVHRLDMAT 67 L ILY+ D ++ +NKP+GLL + D ++ RD YP HRLD T Sbjct: 4 LEILYRSDDLVAINKPNGLLVHRSPIASDADVFAVQLLRDQLSQKVYP----AHRLDRKT 59 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SGV++ AL + E++ +F E E K Y A V GH + G +D PL D Sbjct: 60 SGVLLFALNENVNSEMQGKFMEGEITKTYHAIVRGHTAD-RGEIDYPLKRDDGVTQDAVT 118 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 +ET A+ + + ++A + V L P+TGR HQLR HM + HPI+GDR + + Sbjct: 119 HFETLARAEVPFALGKHATSRYSLVQLNPLTGRMHQLRKHMAHIMHPIIGDRPHGCNKQN 178 Query: 188 AMAP------RLLLHAEMLTITHPAYGNSMTFKAP 216 +++LHA + HP G +T AP Sbjct: 179 RFFKEELGMIQMMLHAVSVEFVHPVSGQHVTIVAP 213 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 18/224 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI---------QRDYPQAES 59 PQ L I+Y+D++++VVNKP ++ PG ++D+++ + Y + Sbjct: 86 PQSIPLDIVYEDEYLLVVNKPRNMVVHPG-AGNYRDTMVNALLYHCQNLSDGTSYERPGI 144 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG++VVA L + + R + Y+A V G S + +DLP+ D Sbjct: 145 VHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDLPIGRDP 204 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPI--TGRSHQLRVHMLALGHPILG 177 NR K V + GK A T+ E++ + LK TGR+HQ+RVH+ LG+P+LG Sbjct: 205 RNRKKMAVVH-GGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVHLSHLGYPLLG 263 Query: 178 DRFYASPEARAM-----APRLLLHAEMLTITHPAYGNSMTFKAP 216 D Y + + LH+ L THP + +M F+AP Sbjct: 264 DPVYRGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAP 307 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 112/254 (44%), Gaps = 52/254 (20%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM-------------------------- 47 L I+Y+D +++VVNK +GL+ P R V Sbjct: 86 LDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDLPEDDEIG 145 Query: 48 --------TRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVAR 99 T + + P+ VHRLD T+G+IVVA L RQF R + Y+A Sbjct: 146 LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTIARTYLAI 205 Query: 100 VWGHPSPAEGLVDLPLICDWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPIT 158 VWG P P G ++ + D +R + V + GK A T YEVVE A A V K T Sbjct: 206 VWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVE-ALPAAALVRFKLET 264 Query: 159 GRSHQLRVHMLALGHPILGDRFYA---------SPEARAMAPRLL-------LHAEMLTI 202 GR+HQ+RVH +GHP+LGD Y +P RA +L LHA L Sbjct: 265 GRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFARLTRQALHAHTLGF 324 Query: 203 THPAYGNSMTFKAP 216 HP G + F+AP Sbjct: 325 RHPRTGEWLEFEAP 338 >UniRef50_C6VN18 Pseudouridine synthase n=3 Tax=Lactobacillus plantarum RepID=C6VN18_LACPJ Length = 293 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 19/216 (8%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-------VHRLDMATS 68 I Y+D + +V+NKP+GL SVPG D+++ RI+ + + + RLD TS Sbjct: 79 IEYEDANWLVLNKPAGLTSVPGP-SNRTDTLVNRIKGYLIASHASNQRPHLITRLDRDTS 137 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL--ICDWPNRPKQK 126 G+++VA + A+ L + K Y A + G +PA G +D P+ + D P R Sbjct: 138 GLVLVAKHRVAQGMLTEPRIAAQLVKTYQAWIEGTITPASGTIDRPIGRVADSPRR---- 193 Query: 127 VCYETGKPAQTEYEV-VEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V G+ A T Y+V + N +R+ L+ +TGR+HQ+RVH+ ALGHP+LGD Y Sbjct: 194 VVTTAGQRAITTYQVEADQLQHNVSRLRLELVTGRTHQIRVHLTALGHPLLGDTLYGG-- 251 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 A R LHA L P ++ F+A PAD Sbjct: 252 NLAWIQRQALHAASLQFFDPFSEQTLHFEAALPADL 287 >UniRef50_P0A5T2 Uncharacterized RNA pseudouridine synthase Rv1540/MT1592 n=131 Tax=Actinobacteria (class) RepID=Y1540_MYCTU Length = 308 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 19/217 (8%) Query: 14 LVILYQDDHIMVVNKPSGLL----------SVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63 + ILY DD I+ V+KP+ + +V G L + T + + VHRL Sbjct: 81 MTILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAAGYRITT--SGVHERQGIVHRL 138 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D+ TSGV+VVA+++ A LKR F+ R K+Y A V GHP P+ G +D P+ + Sbjct: 139 DVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQGHPDPSSGTIDAPIGRHRGHEW 198 Query: 124 KQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY- 181 K + + G+ + T Y+ +E + A + V L+ TGR+HQ+RVH AL HP GD Y Sbjct: 199 KFAIT-KNGRHSLTHYDTLEAFVAASLLDVHLE--TGRTHQIRVHFAALHHPCCGDLVYG 255 Query: 182 ASPE--ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 A P+ R R LHA L HPA G + +P Sbjct: 256 ADPKLAKRLGLDRQWLHARSLAFAHPADGRRVEIVSP 292 >UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae RepID=A8IAL9_AZOC5 Length = 384 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLE-EHKDSVMTRIQ-RDYPQAESVHRLDMATSGVIV 72 +IL++D ++V+NKPSG+ G H D ++ ++ +D + VHR+D T+G ++ Sbjct: 147 IILFEDKDVLVLNKPSGIAVQGGSGTFRHIDGMLDALRAKDGQKPRLVHRIDKDTAGCLL 206 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY--- 129 +A + + +L + FR RE +K Y A V G P P +G + L + + +V Sbjct: 207 IAKNRLSAAQLAKNFRSREARKIYWALVPGVPKPRQGRISTYLARE-EAEERMRVARHGE 265 Query: 130 ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA--- 186 E A T Y VVE+AA + + LKP+TGR+HQ+R H+ + HPI+GD Y + E Sbjct: 266 EDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIHHPIVGDPKYFNIENWEL 325 Query: 187 -RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + RL L A L I HP + AP Sbjct: 326 PGGLQNRLHLLARRLVIPHPRGEGMIDVSAP 356 >UniRef50_A3I3R5 Ribosomal large subunit pseudouridine synthase n=2 Tax=Bacillaceae RepID=A3I3R5_9BACI Length = 279 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 10/215 (4%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHK---DSVMTRIQRDYPQ-AESV 60 +Y P + I+Y+DDH ++V+KP G+ + P + + V+ IQ+ AE V Sbjct: 67 SYKPTPVCAIDIVYEDDHCLIVSKPKGMATHPNDDRDTHTCMNHVIAHIQQQGGMYAEHV 126 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T G+++VA A+ R E+ + Y A V G+ + G + + D Sbjct: 127 HRLDKGTQGLLLVAKHPLAKSIFDRMIEEKSIIRTYAAEVQGNIRSSSGTISESIGKD-R 185 Query: 121 NRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + ++V +TG+ A T YEVV Y ++L+ TGR+HQ+RVH+ +GHPI+GD Sbjct: 186 HHASRRVVSKTGQHAVTHYEVVSRYKNSCVVHLILE--TGRTHQIRVHLAYIGHPIIGDT 243 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 Y + E ++ LHA L HP +T K Sbjct: 244 MYGARE--TVSDDYELHAIQLEFDHPFLNKRITVK 276 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 14/216 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHK---DSVMT--RIQRDYPQAESVHRL 63 P++ L I Y+DD++++VNKP+G L P E H ++V+ + ++ VHRL Sbjct: 73 PEDLPLDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYKAHGEHHAYHPVHRL 132 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPK---KQYVARVWGHPSPAEGLVDLPLICDWP 120 D TSG++++A K + + K R E K ++Y+A + G +P EGL+D P+ P Sbjct: 133 DRNTSGLVLIA--KVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPEGLIDAPIARALP 190 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 + +KV + G+ A+T Y+ V+ + + L TGR+HQ+RVH+ LGHP+LGD Sbjct: 191 SIILRKVSPD-GQTARTHYDTVQTDG-KLSLIHLVLDTGRTHQIRVHLAHLGHPLLGDDL 248 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y AR R LHA L HP G + + P Sbjct: 249 YGGNLAR--IKRQALHAARLHFRHPMTGAEIDVQVP 282 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 11/221 (4%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----- 59 N ++ L I+YQDD ++V+NK + + P L ++++ + + S Sbjct: 86 NITKNKDIDLNIIYQDDDLLVINKQNNITVHPS-LNNTNNTIVNALLASDVELSSINGEL 144 Query: 60 ----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHR+D T+G+++VA + L F+ + K+Y+A V G P +GL+D P+ Sbjct: 145 RPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAPI 204 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K V + K A T +EVVE NT + + TGR+HQ+RVH + HP+ Sbjct: 205 GRSQTDRKKMSVTAKNSKHAITTFEVVERFLKNTL-IKCQIQTGRTHQIRVHFNYINHPV 263 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 L D Y LHA L THP + +P Sbjct: 264 LNDPIYGKKHQEFTDFGQYLHAYKLKFTHPITKKEIELISP 304 >UniRef50_C8P137 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P137_ERYRH Length = 291 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 25/224 (11%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----- 59 ++N ++ L ILY+D I+VV+KP LL+V R EE + R+ DY + + Sbjct: 62 SHNQQRDTPLQILYEDKDILVVDKPYKLLTVSNRKEEELTAF--RLASDYVKKQDSKNRI 119 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV--DLPL 115 VHRLD TSGV++ A ++ +R + ++ E ++ YVA V EG+V D + Sbjct: 120 FVVHRLDQDTSGVLMFAKSEYVKRLYQDKWSELVDERLYVAIV-------EGVVPKDKDV 172 Query: 116 ICDWPNRPKQKVCYET--GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 I + + K Y T G+ A T YEV++ +NT + ++ TGR +Q+RVHM +GH Sbjct: 173 IRSFLRQNKTTHMYSTSSGQEAITNYEVIKRTENNTI-LKIQIDTGRKNQIRVHMNDIGH 231 Query: 174 PILGDRFYASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAP 216 PI+GD+ Y +A+ RL LHA L + +P MTF +P Sbjct: 232 PIIGDKKY---DAKTNPLKRLGLHAYRLRVMNPKTKKMMTFVSP 272 >UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU78_HALO1 Length = 369 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 115/241 (47%), Gaps = 33/241 (13%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA--ESVHRLD 64 PP + +LY D H++V++KP+GL V + +++ + +P + HRLD Sbjct: 101 EPPCPRTIGVLYSDPHMLVIDKPAGL-PVHASARFYFNTLTRVLGERFPGQPMQICHRLD 159 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEG----------LVDLP 114 TSG +VVA K LK F ++ K Y+A VWG P +G ++DLP Sbjct: 160 RETSGALVVARGKPEAARLKGAFADKRAHKTYLALVWGDPPWPDGAWDSAPEDDAIIDLP 219 Query: 115 L--ICDWPNRPKQKVCYETGK-PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 L + D R K ++ G P+ T V+E A V P+TGR HQ+R H+ A Sbjct: 220 LGLVADESARIKIRMEVRAGALPSLTRVRVLERRG-RAALVRCLPLTGRQHQIRAHLAAC 278 Query: 172 GHPILGDRFYASPE-------ARAMAPRLL---------LHAEMLTITHPAYGNSMTFKA 215 GHPI+GD+ YA + R M P LL LHA + + HP G + ++ Sbjct: 279 GHPIVGDKLYAHGDDVFAAYCDRGMTPELLERVRLPRQALHAAAIALPHPFEGRQVRAES 338 Query: 216 P 216 P Sbjct: 339 P 339 >UniRef50_B9XHZ1 Pseudouridine synthase, RluA family n=2 Tax=Verrucomicrobiales RepID=B9XHZ1_9BACT Length = 599 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 10/210 (4%) Query: 16 ILYQDDHIMVVNKPSGL-LSVPGRLEEHKDSVMTRIQRDYPQA-ESVHRLDMATSGVIVV 73 IL++D+ ++V+NKP+ L + GR + + Q +PQ + HRLD TSGV++V Sbjct: 381 ILHEDEALIVLNKPAPLPMHAGGRFNRNTLEYILH-QVYHPQKPRAAHRLDANTSGVVLV 439 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 T+ L+ QF E K Y+ +V G P + P+ + ++V +E G Sbjct: 440 TRTRHFASHLQPQFAHGEVGKFYLVKVQGTPKEDSFSCNAPISAEPSEAGAREVDFEEGL 499 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY-------ASPEA 186 P++TE+ V++ AD T + +P+TGR++Q+RVH+ +G P+ GD Y + Sbjct: 500 PSRTEFRVLQRNADGTTLLEARPLTGRTNQIRVHLWQMGLPVCGDPVYLPGNKLGETQTL 559 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 R L LHA +T HP + M F AP Sbjct: 560 RVEDAPLCLHAWRVTFLHPLHRQRMEFTAP 589 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 111/223 (49%), Gaps = 23/223 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLS--VPGRLEEH-KDSVMTRI----QRDYPQAES-----VH 61 L ++Y+DD+++ VNKP G+++ PG L ++++ R+ Q DY VH Sbjct: 77 LDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYRPGIVH 136 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARV---WGHPSPAEGLVDLPLICD 118 RLD TSGVIVVA T A L F++RE +K Y+A W PA V+ P+ Sbjct: 137 RLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPAR--VEAPIGRH 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTAR----VVLKPITGRSHQLRVHMLALGHP 174 R + V + AQT + + D R V +P TGR+HQ+RVH+ LG P Sbjct: 195 PVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTHQIRVHLAHLGSP 254 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 ILGD Y + R LHA L++ HP G + APA Sbjct: 255 ILGDAVYGRSSETML--RHALHAHFLSVPHPGTGRLLHLHAPA 295 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 19/215 (8%) Query: 16 ILYQDDHIMVVNKPSGLLS--VPGRLEEHKDSVMTRIQRDYPQ------AESVHRLDMAT 67 IL++D+ I VV KP+G++ PG + + R+ + A VHRLD T Sbjct: 87 ILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNISEYGGKERAGIVHRLDKDT 146 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 +G++++A ++ A +EL++QF+ER K+Y+A V G G +DLP+ NR K Sbjct: 147 AGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDHGFIDLPIGRSIYNRKKMGT 206 Query: 128 CYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA---- 182 + A TEY V + +N V +K TGR+HQ+RVH A+GHP+ D+ Y Sbjct: 207 EATNLRDALTEYWVKNRSEKENLTVVDIKLHTGRTHQIRVHFSAIGHPLFNDKVYGFKKS 266 Query: 183 ---SPEARAMAPRLLLHAEM---LTITHPAYGNSM 211 S + R+++ + L HA + + HP G + Sbjct: 267 QLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEKI 301 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 22/228 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ--RDYPQAESV------ 60 P++ L IL++D+H++V+NKP+G++ P +H V + + P V Sbjct: 83 PEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPGINGVERPGIV 142 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG +V+A ++ + L F E +QY+A G PS ++LP I P Sbjct: 143 HRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKCIELP-IGRHP 201 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 ++ ++ ++G+ + T+ VE+ +++ L TGR+HQ+RVHM P+LGD Sbjct: 202 HQRQKMAVTDSGRESITD-AAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHENLPVLGDPV 260 Query: 181 YAS--------PE----ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 YA PE A A R LHAE+L HP G M+F+AP Sbjct: 261 YARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAP 308 >UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS18_9BACT Length = 536 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 18/217 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLS-VPGRLEEHKDSVMTRIQRDYPQAES---VHRLDM 65 +E +IL++D+H++VVNKP+G+ + P + + ++ P+ S VHRLD Sbjct: 6 EEAGRLILFEDEHLLVVNKPAGMNTHAPSPYA--GEGIYEWLKHREPRWASLAIVHRLDK 63 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC---DWPNR 122 TSGV+V T A R L QF +K+Y+ S + L+ + +R Sbjct: 64 ETSGVMVFGKTTVANRSLTEQFTNHSIRKKYLLLTDKVVSSQTSTMVSCLVRVGEKYLSR 123 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 P + G+ A+T +EV+ A T V +PITGR+HQ+RVH G PILGD Y Sbjct: 124 P----VHAGGEKAETHFEVITKAEGGTL-VEAEPITGRTHQIRVHAAEQGFPILGDALYG 178 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + A R+ LHA L + HP MTF+A +F Sbjct: 179 GTK----ASRVCLHAAELKLKHPGTNAEMTFRAEPNF 211 >UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae RepID=Q1AVY4_RUBXD Length = 305 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 111/209 (53%), Gaps = 16/209 (7%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLDMATSG 69 IL++D+HI VV+KP+G++ PG V + R E VHRLD TSG Sbjct: 78 ILFEDEHIAVVDKPAGMVVHPGAGNRSGTLVNALLGRGIAGGEDPERPGIVHRLDRDTSG 137 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 ++VVA + A L R ++ Y A V G P G VD P+ D P P + Sbjct: 138 LMVVAKGEPAYSRLVEMLAARRVRRVYRALVVGEGLPPSGTVDSPVGRD-PENPAL-MAA 195 Query: 130 ETGKPAQTEYEVVEYAADNTA-RVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 G+PA T +EV+ AA +T RV L+ TGR+HQ+RVH+ A+G+P+ D Y RA Sbjct: 196 GVGRPAVTHFEVLGEAAGHTMLRVRLE--TGRTHQIRVHLSAIGYPVYADPLY----GRA 249 Query: 189 M-APRLLLHAEMLTITHPAYGNSMTFKAP 216 + RL LHAE L+ HPA G + F +P Sbjct: 250 VPGRRLWLHAERLSFEHPAEGRPLDFFSP 278 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 21/213 (9%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGR------LEEHKDSVMTRIQR-DYPQAESVHRLDMATS 68 ++Y D ++VVNK +G+ PG L H ++ + R D + VHRLD TS Sbjct: 93 VVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPELARFDGERPGVVHRLDKDTS 152 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++ VAL ++A L R F RE K+Y+ V G P AEG VD PL D ++ + V Sbjct: 153 GLLTVALNESARLALTRSFARREVDKEYLTLVHGRPE-AEGTVDHPLGRDPQSKIRMAVV 211 Query: 129 YETGKPAQTEYEVVEYAADNTARVV-LKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 GK A T ++ V + D ++ ++ +TGR+HQ+RVHM LG P++GD Y P+A+ Sbjct: 212 PRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMAYLGFPLVGDALYG-PQAQ 270 Query: 188 A-----------MAPRLLLHAEMLTITHPAYGN 209 A +A +LHA L HP G Sbjct: 271 AAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGR 303 >UniRef50_Q1WS68 Pseudouridine synthase n=2 Tax=Lactobacillus salivarius RepID=Q1WS68_LACS1 Length = 304 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 106/207 (51%), Gaps = 15/207 (7%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-----VHRLDMATSGV 70 I++++D ++VVNKP G+ S P + ++ + Y A VHRLDM TSG Sbjct: 88 IIFENDDLLVVNKPQGIKSHPN--QPYETGTLVNYIAGYLDARDEHPYMVHRLDMLTSGA 145 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++VA L R K+ Y+A G EG++DLP+ D ++ K+KV Sbjct: 146 MIVAKNPVVVPILTRLISTHTIKRDYLAITEGIFDQKEGVIDLPIGKDENDKRKRKVDGI 205 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY--ASPEARA 188 PA+T Y+V++ +N+ V L+ TGR+HQLRVH+ A+GHPI+GD Y S E Sbjct: 206 GALPARTRYQVIKEFENNSV-VYLRLETGRTHQLRVHLSAMGHPIVGDVLYNHVSEEKHM 264 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKA 215 M LH +T P + KA Sbjct: 265 M-----LHGYKQKLTLPFSMRELELKA 286 >UniRef50_A4CVN5 Pseudouridine synthase n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CVN5_SYNPV Length = 215 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 95/180 (52%), Gaps = 9/180 (5%) Query: 21 DH--IMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKA 78 DH +MVV+KP+GLL PG +DS+++R+Q P VHRLD TSG++++A Sbjct: 16 DHPRLMVVDKPAGLLCQPGLGSHQQDSLISRLQLACPALRLVHRLDRDTSGLVLLAKDPD 75 Query: 79 AERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTE 138 R L F R +K YVA V G GL+ LPL +P + GK T Sbjct: 76 MLRLLGMFFASRRVRKLYVADVQGQMKNVSGLIGLPL-ARLKRQPPTYGVHPGGKACVTL 134 Query: 139 YEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-----RAMAPRL 193 + ++ +T R+ L P TGRSHQLR H+ AL HPI+GD Y A RAMA R Sbjct: 135 WRRLKLMESST-RLWLCPRTGRSHQLRAHLAALHHPIIGDPIYNPGCAVGLRLRAMALRF 193 >UniRef50_UPI000178A5E6 pseudouridine synthase, RluA family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A5E6 Length = 302 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 14/210 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVH-------RLDMA 66 L +LY+DD +VVNKP+GL P E +++ + + Y +AE +H RLD Sbjct: 82 LQVLYEDDFCLVVNKPAGLAVHPD--NESRETTLNHVVAAYYEAEGIHAAVRHIHRLDKD 139 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 T+G ++ A + A+ +L RE++ + Y A V G S +DLP+ D + +++ Sbjct: 140 TTGPVLYAKNEYAQLKLDEAMREKKIVRMYAAIVQGRVSQELKRIDLPIGKDRYHASRRR 199 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEA 186 V TG+ A T E A + + ++ TGR+HQ+RVH+ +GHP+LGD Y P Sbjct: 200 VSL-TGQAAITHILSAE-AYPKASLLHIRLETGRTHQIRVHLSHMGHPLLGDVLYGGPGT 257 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 A R LH E L HP G S+ AP Sbjct: 258 FA---RQALHGERLLFHHPFTGESIEVPAP 284 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 26/219 (11%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGR-----------LEEHKDSVMTRIQRDYPQAESVHR 62 L I+++DD I+V++KP ++ PG L +KD Q P+A VHR Sbjct: 88 LKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKD------QDKLPRAGIVHR 141 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++V A + A L +Q ER+ ++Y+A V G +G ++ P+ D NR Sbjct: 142 LDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIY-QQGTINQPIGRDPTNR 200 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K + Y GK A T Y +E D + + TGR+HQ+RVHM ++ HP++GD+ Y Sbjct: 201 TKMAINYR-GKEAITYYTPIE-VYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYN 258 Query: 183 SPEAR------AMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + + R LHA L+ HP + FK+ Sbjct: 259 KSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKS 297 >UniRef50_Q1VZ16 Pseudouridine synthase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZ16_9FLAO Length = 292 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 32/213 (15%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM----TRIQRD---YPQAESVHRLDMA 66 L ++++DD + VVNKP G + + ++++ T ++D YPQ VHRLD Sbjct: 87 LKVIFEDDSMAVVNKPEGYPTNGNYFKTIENALTYNLKTSSEKDKLPYPQP--VHRLDNP 144 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL-PLICDWPNRPKQ 125 TSG++++A T +++ L F + K Y+A V GH EGL D+ L D Sbjct: 145 TSGLLIIAKTLSSKSYLSVLFEHNKVHKIYLAIVEGH---FEGLSDIISLDID------- 194 Query: 126 KVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 GK + T Y V + D + + LKP +GR+HQLR+H+ +GHPI+GD+ Y Sbjct: 195 ------GKQSSTNYGVEKMFKINQDEFSLLSLKPSSGRTHQLRIHLSKIGHPIVGDKTYG 248 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 S ++ +L+LHA L + HP S++F+ Sbjct: 249 S---LTLSNKLMLHASSLELRHPKTDKSLSFET 278 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 14/221 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV-------H 61 PQ+ L ++Y+D+ ++V+NK SG++ P H D+ + Y + + V Sbjct: 74 PQDIPLDVIYEDECMLVLNKQSGIVVHPTSY--HPDNTIANGIVYYLKQKGVTKKVRPVS 131 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+I+ A + + L +Q KK+Y+ V G P EG ++LP I P Sbjct: 132 RLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNEGTINLP-IARKPG 190 Query: 122 RPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 + E G P+ T Y++++ + + N+A + K TGR+HQ+RVH A+G PI GD Sbjct: 191 SIMLRHISEEGAPSITHYKILKTFPSHNSALLSFKLETGRTHQIRVHCKAMGFPIYGDTL 250 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y S R LH+ I HP + FKA P+D Sbjct: 251 Y-SDNTNLFISRQALHSYRTEIIHPVTLKGVIFKAELPSDI 290 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 14/218 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLS--VPGRLE-EHKDSVMTRIQR-----DYPQAESV 60 P+ L ILY+D+H++V+NKP+G++ PG ++++ Q+ D + V Sbjct: 82 PENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLLPDTIRPGIV 141 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++V A T +++L F R+ K Y+A G P A+G + P I P Sbjct: 142 HRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGRP--ADGEIQAP-IGRHP 198 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 KQ TGKPA + + + ++ D + V ++ TGR+HQ+RVHM G PILGD Sbjct: 199 IHRKQMAVIPTGKPAISFCKTLGWS-DKLSFVQIEIATGRTHQIRVHMKYRGSPILGDPL 257 Query: 181 YA--SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 Y S P LLHA +L HP ++ F P Sbjct: 258 YGQISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTP 295 >UniRef50_C7LZI3 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI3_ACIFD Length = 309 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 15/201 (7%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----------VHRLD 64 V+ Y+DD + V++KP+GL+ L + + SV +P + VHRLD Sbjct: 79 VVCYEDDDVAVIDKPAGLIVHRTHLRDVRPSVADWALERWPSLRALPGDPLRRGLVHRLD 138 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++V+AL+ A L+R + E +++Y A V G P P ++ PL D + + Sbjct: 139 RGTSGLMVIALSAGAYESLRRAVHDHEVERRYRALVVGVP-PQAARIEAPLGRDLRDLSR 197 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 V G+ A+T+ VV + D T+ V L TGR+HQ+RVH+ A+GHPI+GD Y P Sbjct: 198 VAVV-SGGRDARTQLRVVWHGPD-TSLVELTLETGRTHQIRVHLSAIGHPIVGDEVYGVP 255 Query: 185 EARAMAPRLLLHAEMLTITHP 205 P LHA L HP Sbjct: 256 YGGLERP--FLHATALAFEHP 274 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 113/244 (46%), Gaps = 37/244 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGR---LEEHKDSVMTRIQR-----DYPQAESV 60 P+ L ILY+DD ++V+NKP+G++ P R ++ R Q + V Sbjct: 74 PENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPTRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGVIVVA A L Q+ +R +K+Y A +G + + Sbjct: 134 HRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIHASIGRHPY 193 Query: 121 NRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R KQ + + T K A T YEVVE T RV ++P TGR+HQ+RVH+ +G PIL D Sbjct: 194 QRDKQAIREGHATSKTASTFYEVVERHGRVT-RVDVRPKTGRTHQIRVHLAHIGCPILCD 252 Query: 179 RFYA-------------------------SPEARA-MAPRLLLHAEMLTITHPAYGNSMT 212 R Y +PE + R LHA+ LT T+P G MT Sbjct: 253 RLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQTGKEMT 312 Query: 213 FKAP 216 AP Sbjct: 313 LTAP 316 >UniRef50_C7TK72 Ribosomal large subunit 23S pseudouridine synthase D n=8 Tax=Lactobacillus RepID=C7TK72_LACRL Length = 278 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 118/216 (54%), Gaps = 15/216 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---DYPQAESVHRLDM 65 P+ P L Y+DD +++V+KP+G+ + P + E ++M + +P A HRLDM Sbjct: 71 PETPHLNTRYEDDDLLIVDKPAGMKTHPNQPGE-TGTLMNQAAAYLAPFP-ALITHRLDM 128 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS--PAEGLVDLPLICDWPNRP 123 ATSG++V+A A+ + RQ + + Y+A V PS P +G + P+ D P+ Sbjct: 129 ATSGLLVIAKNPLAQAIINRQLTTKTMHRDYLAVV---PSGIPEKGTIQAPIGHD-PDDK 184 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 ++++ G A T Y + AD TA + L TGR+HQ+RVH+ ++G PI+GD YA+ Sbjct: 185 RKRMIRADGAFAVTHYHRIAETAD-TATIELNLETGRTHQIRVHLASIGFPIIGDPLYAA 243 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 E A R+ LHA + + P +T +P+ F Sbjct: 244 TET---ATRMQLHAFRVRLIRPLTIEPLTVTSPSPF 276 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 113/238 (47%), Gaps = 36/238 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ------RDYPQAES--- 59 P++ L ++Y+D +MVVNKP G++ PG H + T I +D P Sbjct: 127 PEDIPLDVVYEDSDLMVVNKPPGMVVHPG----HGNYSGTLINALLFHVKDLPLNADERP 182 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHR+D TSG++VVA T A L +QF ++ +++YVA VWG+ +G V + Sbjct: 183 GLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIGR 242 Query: 118 DWPNRPKQKVC--YETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHP 174 NR + V + GK A T Y+V+E T VL+ TGR+HQ+R HM +GH Sbjct: 243 HPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLE--TGRTHQIRAHMKHIGHT 300 Query: 175 ILGDRFYASPE----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + D Y + A PR LHA+ L HP+ G M F P Sbjct: 301 LFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGELMRFNTP 358 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 12/211 (5%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVHRLDM 65 L ++Y+D I V+NKP+G++ P V + R YP + VHRLD Sbjct: 91 LDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLAR-YPDLAIGGELRPGIVHRLDR 149 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG++V+A A R L Q + R +K Y A V G P P G +D P+ D +R + Sbjct: 150 DTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRP-PETGTIDAPIGRDPRDRLRM 208 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V + G+PA+T Y +++ D + + ++ TGR+HQ+RVH+ LG+PI+GD Y Sbjct: 209 AVVPD-GRPARTHYRLLDTFGDYSL-LEVQLETGRTHQIRVHLRHLGYPIVGDPVYGPRR 266 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 + R LHA L + HP G F AP Sbjct: 267 SHLHLSRQFLHAAYLGLVHPRSGRWQEFTAP 297 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV-------H 61 PQE ++Y+D ++V+NK G++S P + H + ++Y + + V + Sbjct: 81 PQEIPFNVVYEDIDVIVINKEPGIVSHPTK--SHPKDTIANAAQNYLEKKGVACRIRFVN 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLDM TSG++V+A + +Q + E K+YVA V G EG +D I + Sbjct: 139 RLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVANEGEID-GAIYRSSD 197 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 ++V + G+ + T++ V+E AD T + + +TGR+HQ+RVHM ++GHP+LGD Y Sbjct: 198 ETIKRVVDDRGQQSLTKFTVLERYADATM-LEVSLLTGRTHQIRVHMESIGHPMLGDHLY 256 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + + R LHA L+ P Y + +A P D Sbjct: 257 GYVDTE-LIRRQALHASYLSFLQPRYKEKIEVRASLPKDL 295 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 9/198 (4%) Query: 24 MVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----VHRLDMATSGVIVVALTKAA 79 +VVNK SG++ P H + Y + +HRLD TSGVIV A T+ A Sbjct: 88 VVVNKRSGIVVHPS--YGHLSGTLLNALMGYSAGKYNPYLIHRLDKDTSGVIVFAKTEKA 145 Query: 80 ERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEY 139 + + +Q ++R KK Y A V G + G++ PL NR V K A TE+ Sbjct: 146 KISISKQLQKRVVKKIYYAAVKGVIAENRGIIKAPLGRSPKNRKLVSVNPLAKKVAITEF 205 Query: 140 EVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM--APRLLLHA 197 +V+E D T + ++ ITGR+HQ+R HM + HP++GD+ Y P + R +LHA Sbjct: 206 KVIERKDDYTL-LKVRIITGRTHQIRSHMKYINHPVIGDKQYGGPGTIGLKRCERQMLHA 264 Query: 198 EMLTITHPAYGNSMTFKA 215 +T THP+ ++ F A Sbjct: 265 HNITFTHPSTSKTVKFIA 282 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 363 2e-99 UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K9... 316 3e-85 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 307 2e-82 UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A... 306 4e-82 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 305 7e-82 UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria Re... 304 2e-81 UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2... 304 2e-81 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 303 3e-81 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 299 4e-80 UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID... 295 1e-78 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 294 1e-78 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 293 3e-78 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 292 4e-78 UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 292 5e-78 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 292 6e-78 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 291 9e-78 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 291 1e-77 UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A... 291 2e-77 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 290 3e-77 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 289 5e-77 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 289 7e-77 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 288 7e-77 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 287 2e-76 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 287 2e-76 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 286 3e-76 UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 286 3e-76 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 285 6e-76 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 285 6e-76 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 284 1e-75 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 284 1e-75 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 284 2e-75 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 284 2e-75 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 283 2e-75 UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 283 3e-75 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 283 4e-75 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 282 4e-75 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 282 5e-75 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 282 7e-75 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 282 8e-75 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 280 2e-74 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 280 2e-74 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 280 2e-74 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 280 3e-74 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 279 4e-74 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 279 7e-74 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 278 8e-74 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 278 8e-74 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 278 1e-73 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 278 1e-73 UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria R... 278 1e-73 UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 278 1e-73 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 277 1e-73 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 277 1e-73 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 277 1e-73 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 277 2e-73 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 277 2e-73 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 277 3e-73 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 276 4e-73 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 276 4e-73 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 275 5e-73 UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A... 275 5e-73 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 275 5e-73 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 275 5e-73 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 275 8e-73 UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID... 274 1e-72 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 274 1e-72 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 274 1e-72 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 274 1e-72 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 274 2e-72 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 274 2e-72 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 274 2e-72 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 273 3e-72 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 273 4e-72 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 272 4e-72 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 272 6e-72 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 272 7e-72 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 271 9e-72 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 271 1e-71 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 271 1e-71 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 270 2e-71 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 270 2e-71 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 270 3e-71 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 270 3e-71 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 269 4e-71 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 269 5e-71 UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 269 5e-71 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 269 6e-71 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 269 6e-71 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 269 6e-71 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 269 7e-71 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 268 9e-71 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 268 1e-70 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 267 2e-70 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 267 3e-70 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 267 3e-70 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 266 3e-70 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 266 3e-70 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 266 3e-70 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 266 3e-70 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 266 4e-70 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 266 4e-70 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 265 5e-70 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 265 5e-70 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 265 5e-70 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 265 5e-70 UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma prot... 265 6e-70 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 265 7e-70 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 265 7e-70 UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 265 7e-70 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 265 1e-69 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 265 1e-69 UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri ... 264 1e-69 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 264 1e-69 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 264 1e-69 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 264 2e-69 UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe ... 263 3e-69 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 263 3e-69 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 263 3e-69 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 263 3e-69 UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timone... 263 4e-69 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 263 4e-69 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 262 4e-69 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 262 6e-69 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 262 6e-69 UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=... 262 7e-69 UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales ... 262 8e-69 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 262 8e-69 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 261 1e-68 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 261 1e-68 UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 261 1e-68 UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 260 2e-68 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 260 2e-68 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 260 2e-68 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 260 2e-68 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 260 2e-68 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 260 2e-68 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 260 2e-68 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 260 2e-68 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 260 2e-68 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 260 2e-68 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 260 2e-68 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 260 2e-68 UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aerug... 260 3e-68 UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria Rep... 260 3e-68 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 260 3e-68 UniRef50_B7VRG6 Pseudouridine synthase n=4 Tax=Vibrionales RepID... 259 4e-68 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 259 4e-68 UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 259 5e-68 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 259 5e-68 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 259 5e-68 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 259 6e-68 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 259 6e-68 UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 259 6e-68 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 258 1e-67 UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 258 1e-67 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 258 1e-67 UniRef50_A5ZGG0 Pseudouridine synthase n=4 Tax=Bacteroides RepID... 258 1e-67 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 258 1e-67 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 258 1e-67 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 257 1e-67 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 257 2e-67 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 257 2e-67 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 257 2e-67 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 257 2e-67 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 257 2e-67 UniRef50_C5VJ38 Pseudouridine synthase n=2 Tax=Prevotella RepID=... 257 2e-67 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 257 3e-67 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 257 3e-67 UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria R... 256 3e-67 UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae Re... 256 4e-67 UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 256 4e-67 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 256 4e-67 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 256 4e-67 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 256 4e-67 UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp.... 256 4e-67 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 256 4e-67 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 255 5e-67 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 255 7e-67 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 255 7e-67 UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter Re... 255 7e-67 UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A... 255 8e-67 UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergen... 255 1e-66 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 255 1e-66 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 254 1e-66 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 254 1e-66 UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lac... 254 1e-66 UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elo... 254 1e-66 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 254 1e-66 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 254 1e-66 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 254 1e-66 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 254 1e-66 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 254 2e-66 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 254 2e-66 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 253 2e-66 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 253 3e-66 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 253 4e-66 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 252 5e-66 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 252 7e-66 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 252 7e-66 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 251 1e-65 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 251 1e-65 UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio sal... 251 1e-65 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 251 1e-65 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 250 2e-65 UniRef50_B7I1Q3 Dual specificity pseudouridine synthase n=17 Tax... 250 2e-65 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 250 2e-65 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 250 2e-65 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 250 2e-65 UniRef50_A6FXR5 Pseudouridine synthase n=1 Tax=Plesiocystis paci... 250 3e-65 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 250 3e-65 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 249 4e-65 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 249 4e-65 UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus Rep... 249 5e-65 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 249 5e-65 UniRef50_Q12RE8 Pseudouridine synthase n=83 Tax=Bacteria RepID=Q... 249 5e-65 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 249 7e-65 UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales... 248 9e-65 UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales R... 248 9e-65 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 248 1e-64 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 248 1e-64 UniRef50_C2L1H2 Pseudouridine synthase n=1 Tax=Oribacterium sinu... 247 1e-64 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 247 1e-64 UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A... 247 2e-64 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 247 2e-64 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 247 3e-64 UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID... 246 4e-64 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 245 6e-64 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 245 6e-64 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 245 6e-64 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 245 8e-64 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 245 9e-64 UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D... 244 1e-63 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 244 1e-63 UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepI... 244 1e-63 UniRef50_C8Q1E7 Pseudouridine synthase n=1 Tax=Enhydrobacter aer... 244 1e-63 UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus Rep... 244 2e-63 UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 244 2e-63 UniRef50_B2J8D4 Pseudouridine synthase n=7 Tax=Cyanobacteria Rep... 244 2e-63 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 244 2e-63 UniRef50_D1XZI5 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 244 2e-63 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 244 2e-63 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 243 3e-63 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 243 3e-63 Sequences not found previously or not previously below threshold: UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 268 8e-71 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 265 8e-70 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 260 2e-68 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 257 2e-67 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 250 3e-65 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 248 9e-65 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 246 4e-64 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 363 bits (933), Expect = 2e-99, Method: Composition-based stats. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV Sbjct: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP Sbjct: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 >UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K915_VIBPA Length = 254 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 125/219 (57%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M YNPP+EPW+ I+++D+HI+V NKPSGLLSVPGRLEEH DS+ +R+ YP + V Sbjct: 10 MAMTEYNPPREPWVDIVFEDEHILVANKPSGLLSVPGRLEEHYDSLWSRLVAIYPDIQVV 69 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM TSG++++A K AER LK+QF+ R K Y ARVWGHP+ G +DLPLICDWP Sbjct: 70 HRLDMDTSGLMLLAKHKEAERSLKKQFQYRLTHKVYYARVWGHPTNDNGEIDLPLICDWP 129 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRP+Q VC++ GKP++T Y+VV+ + T+ V L PITGRSHQLRVHM ALGHPI+GD F Sbjct: 130 NRPRQIVCFDDGKPSKTLYQVVKR-EERTSIVRLLPITGRSHQLRVHMQALGHPIVGDEF 188 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y+ EA + RL LHA L+ HP P DF Sbjct: 189 YSEGEAFEFSDRLELHAAELSFYHPHSEALQCAFVPCDF 227 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 9/218 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+E L I+Y+D+ ++VVNK +G++ P V + + V Sbjct: 77 PEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVLRPGIV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++VVA A + L Q +E++ ++Y V G+ EG++DLP+ Sbjct: 137 HRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIGRHPR 196 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V GK AQT Y+V+E + K +TGR+HQ+RVH LGHP+LGD Sbjct: 197 DRQKMAVV-SNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRVHFSYLGHPVLGDPK 255 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y R +LHA L+ HP G + F AP Sbjct: 256 YGHQNNPFGVKRQMLHAIKLSFIHPRSGELLEFTAPLP 293 >UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A n=82 Tax=Proteobacteria RepID=RLUA_VIBVU Length = 250 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 122/223 (54%), Positives = 151/223 (67%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW I+++DDHI+ VNKPSGLLSVPGRL EH DS+ +R+Q YP+ + V Sbjct: 1 MAMLEYLPPTDPWTEIIFEDDHILAVNKPSGLLSVPGRLPEHHDSMWSRLQEQYPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++V A K AE LK+QF+ R K Y ARVWGH G++DLPLICDWP Sbjct: 61 HRLDMSTSGLMVFAKNKRAEAALKKQFQYRLTHKVYYARVWGHVEADSGMIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEY----AADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 NRP QKVC+E GKP+QT ++V + T + L P+TGRSHQLRVHM ALGHPI+ Sbjct: 121 NRPMQKVCHEHGKPSQTAFQVAKREVHANGAQTTIMRLLPVTGRSHQLRVHMQALGHPIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA +A + RL LHA L+ HP + P DF Sbjct: 181 GDEFYAQGDAFTFSERLELHAAELSFYHPKSHWLRSLFVPCDF 223 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 305 bits (782), Expect = 7e-82, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 12/222 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L I++QD I V+NKP+GL+ P V + + V Sbjct: 107 PEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDLSGINGELRPGIV 166 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++VVA A L Q ++ +++Y+A V G G V+ P+ D Sbjct: 167 HRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAETGRVEAPIGRDPK 226 Query: 121 NRPKQKVCYETGKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R + V GK A T + V+ Y + + + TGR+HQ+RVH+ +GHP+ GD Sbjct: 227 DRQRMAVI-AGGKSAITHFRVLARYPEQGFSLLHCRLETGRTHQIRVHLAHIGHPVAGDP 285 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y +A LHA L HP G M F+A P F Sbjct: 286 KYGPRKAAFGLTGQALHAWKLEFVHPRSGEPMRFQADPPEPF 327 >UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria RepID=A3MZ33_ACTP2 Length = 237 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 136/222 (61%), Positives = 170/222 (76%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP EP+L +Y+D+HI+V+NKPSGLLSVPG E+ DS MTR+Q+ Y E Sbjct: 16 MALIEYHPPLEPFLTEVYRDNHILVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEPA 75 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP---AEGLVDLPLIC 117 HRLDMATSG+++ AL+KAAE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 76 HRLDMATSGILLFALSKAAEKELKRQFRDREPKKHYIALLWGKLGEKVGDTGEMNFPLIC 135 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+ + +NT RV L PITGRSHQLRVH LALGHPILG Sbjct: 136 DWENRPRQKICYERGKKAITHYEVLAHLPNNTTRVKLTPITGRSHQLRVHSLALGHPILG 195 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYASP A++++PRL LHAE L+ITHP G +MTF A +F Sbjct: 196 DKFYASPLAKSLSPRLCLHAESLSITHPITGEAMTFTAQTEF 237 >UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2Y9_VIBSE Length = 250 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 121/223 (54%), Positives = 159/223 (71%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW+ I+++DD I+ VNKPSGLLSVPGRL EH DS+ +R++ +P+ + V Sbjct: 1 MAMLEYTPPTDPWVDIVFEDDDILAVNKPSGLLSVPGRLAEHYDSMWSRLKEVHPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++++A K +ER LK+QF+ R K Y ARVWGH P EG +DLPLICDWP Sbjct: 61 HRLDMSTSGLMLLAKNKPSERALKKQFQYRLTHKVYYARVWGHVEPQEGNIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 NRP+QKVC++ GKP+QT ++VV+ +T V L PITGRSHQLRVH++A+GH I+ Sbjct: 121 NRPRQKVCFDDGKPSQTLFQVVKREVHSDGTHTTVVRLLPITGRSHQLRVHLMAIGHAIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA+ EA + RL LHA L+ HPA + P DF Sbjct: 181 GDEFYATEEAYQFSERLELHAAELSFYHPATDQLSSIFVPCDF 223 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 9/216 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 + L ILY+D+ ++VVNK G++ P K V + + VH Sbjct: 103 ENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPGIVH 162 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 R+D TSG++VVA A + L Q + ++Y+A V G G V+ P+ D + Sbjct: 163 RIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPAD 222 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V ++ K A T YEV+E D + + TGR+HQ+RVHM L HP+LGD Y Sbjct: 223 RKKMAVVFQNAKEAVTHYEVLERFRD-FTLLEARLETGRTHQIRVHMAYLKHPVLGDPLY 281 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 + +LHA++L HP G M F APA Sbjct: 282 GPRKNPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPA 317 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 111/218 (50%), Gaps = 10/218 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 PQE L ++Y+D ++V+NKP GL+ PG V + + V Sbjct: 75 PQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLRPGIV 134 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG+IV A + L +Q E+ +QY A V G + G +D P+ D Sbjct: 135 HRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRDEK 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V + +PA T ++VVE DN V + TGR+HQ+RVHM +G PI+GD Sbjct: 195 DRQKMAVTEKNSRPAITHFKVVERF-DNYTLVSCRLETGRTHQIRVHMQYIGFPIVGDPK 253 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y+ + +LHA L+ THP+ G MTF+AP Sbjct: 254 YSLRKTLPT-QGQMLHAYQLSFTHPSTGERMTFEAPLP 290 >UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID=A9CFZ5_AGRT5 Length = 222 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 108/214 (50%), Positives = 148/214 (69%), Gaps = 1/214 (0%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 YNPP +PWL I+++DD ++V++KPSGLLSVPGR DS+MTR+Q+ +P+A ++RLD Sbjct: 10 YNPPLDPWLTIVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQKQFPKALMINRLDK 69 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++++L + A + QF +RE +K YVA VWG + EG VDLPL D N+P+ Sbjct: 70 DTSGIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRH 129 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +V +E GKPAQ+ + V+E R+ L P+TGR+HQLRVHM ALGHPILGD FYA E Sbjct: 130 RVDHENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEGE 189 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A APRL+LHA+ + HP G +T+ P F Sbjct: 190 ALTAAPRLMLHAQEVGFRHP-DGRDVTYTVPCPF 222 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 11/221 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 PQ+ L ILY+D+ ++V+NK SG++ P V + + V Sbjct: 72 PQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIV 131 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG +V+A A + L QF R +K+Y+A V G PS + G V + Sbjct: 132 HRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPV 191 Query: 121 NRPKQKVCYET-GKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR K V GK A T+Y+++ + +++ V+ TGR+HQ+RVHML LGHP++GD Sbjct: 192 NRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRVHMLYLGHPLIGD 251 Query: 179 RFYASPEARAMAP-RLLLHAEMLTITHPAYGNSMTFKAPAD 218 YA P + P RL+LHA L HP G M F+AP Sbjct: 252 PIYAKPARQKAKPGRLMLHAWRLGFDHPRTGKRMDFEAPVP 292 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 14/223 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P+ L ILY+D+ ++++NKP G++ P V + + Sbjct: 94 PENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGELRPGI 153 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+DM T+GVI+ + R + Q +E K++Y A V+G EG ++ + Sbjct: 154 VHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGSIGRSK 213 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K V GKPA T Y V+ +N A + + TGR+HQ+RVHM ++GHP+ Sbjct: 214 TDRKKMAVI-PDGKPAVTHYRVIRNYTSPNGNNFAHIECELETGRTHQIRVHMTSIGHPL 272 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y + + LHAEML HP G M F AP Sbjct: 273 LGDEIYGAAKNPFKLDGQALHAEMLGFVHPRTGEYMEFHAPLP 315 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 14/228 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DY 54 E P+ L ILY+D+ ++V+NKP+GL+ P + V + D Sbjct: 75 EENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDP 134 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSGV+VVA + L ++F+ER+ K Y+A V G EG ++LP Sbjct: 135 NRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLP 194 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 L R K+ V Y GK A TEY+ ++ D V ++ TGR+HQ+RVH +G+P Sbjct: 195 LGRHPILRHKRAVVY-NGKEAITEYKTLKEFGDLATLVWIRLRTGRTHQIRVHFKYIGNP 253 Query: 175 ILGDRFYASPEARAMAP----RLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y + R +LHA L HP M F AP Sbjct: 254 LIGDSLYGKNKIEKNLQIPVGRQMLHALKLGFYHPKTKEWMEFLAPLP 301 >UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=C7LVL1_DESBD Length = 234 Score = 292 bits (749), Expect = 5e-78, Method: Composition-based stats. Identities = 118/214 (55%), Positives = 153/214 (71%), Gaps = 4/214 (1%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 Y+PP EP L ++++D ++VVNKPSGLLSVPGR E DSV++R++ + A++VHRLD+ Sbjct: 8 YDPPTEPRLAVIHEDRDMVVVNKPSGLLSVPGRTPELFDSVLSRVREIHRGAQAVHRLDL 67 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+VVA + AE L++QF++R +K Y+ARV G S G VDLPLICDWPNRP Q Sbjct: 68 GTSGVLVVATRRKAETILRQQFQDRLTRKLYLARVQGVMSEDSGQVDLPLICDWPNRPMQ 127 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 VC++TGKPA T+Y+V+E ++T V+L+P TGRSHQLRVHM +LGHPILGD Y Sbjct: 128 MVCHDTGKPALTDYQVLESDGEST-LVLLRPHTGRSHQLRVHMASLGHPILGDNLYG--- 183 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + RLLLHA L + HP G TF AP DF Sbjct: 184 EQRPGERLLLHASQLGLYHPYSGEWTTFHAPCDF 217 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 292 bits (748), Expect = 6e-78, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 106/219 (48%), Gaps = 10/219 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L ILY+D I+V+NK G++ P V + + V Sbjct: 75 PEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLSGINGEIRPGIV 134 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V A AA +L Q R + + Y A V G+ G++ + Sbjct: 135 HRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPT 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K + +E GKPA T + V+E V + TGR+HQ+RVHM ++GHP+LGD Sbjct: 195 DRKKMAIVHEHGKPAVTHFRVLERFGA-YTLVECRLETGRTHQIRVHMASIGHPVLGDPK 253 Query: 181 YASPEARAMA-PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A A LH+ LT+THP MTF AP Sbjct: 254 YGPRKACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLP 292 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 291 bits (747), Expect = 9e-78, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 13/228 (5%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------- 54 ++ P E L I+Y+D I+V+NK +GL+ P H+++++ + Sbjct: 71 EDSGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPG-NHENTLVNALIAYCDNLSTISG 129 Query: 55 -PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSGV+V+A + R+L QF++R+ KK Y + G EG +D Sbjct: 130 VNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDA 189 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ D +R K V + K A T ++V+E+ D+ + V ++ TGR+HQ+RVH +G Sbjct: 190 PIGRDPHDRKKMAVTRKNSKKAVTYFKVLEFFRDH-SYVEVELKTGRTHQIRVHFSYMGF 248 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 P++GD Y R A R LLHA L HP + +KA P DF Sbjct: 249 PVVGDSIYGKKRNRLQATRQLLHAYRLGFYHPRNDKWVEYKASLPDDF 296 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 15/221 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRLD 64 + L IL++DDH+++++KP+GL+ PG H + + P+A VHRLD Sbjct: 105 EAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLD 164 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 T+G++VVA T A+ +L RQ ++R K+ Y+A V G G+VD P+ +R + Sbjct: 165 KDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKD-GVVDAPIGRHPIHRTR 223 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA-- 182 V + GKPA+T Y V+E +T + TGR+HQ+RVH+L++GHP+ GD Y Sbjct: 224 MAVV-QNGKPARTHYRVLEKFTAST-LLHCSLETGRTHQIRVHLLSIGHPLAGDPVYGRT 281 Query: 183 -----SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + +A PR LHA L +THP G + +++P Sbjct: 282 SPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLP 322 >UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A n=20 Tax=Proteobacteria RepID=RLUA_HAEDU Length = 222 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP P+L +Y+D+HI+V+NKPSGLLSVPG E+ DSVMTR+Q+ Y AE Sbjct: 1 MALIEYHPPLNPFLEEVYRDNHIVVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEPA 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP---AEGLVDLPLIC 117 HRLDMATSG+I++AL+K AE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 61 HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+E+ A+NT RV PITGRSHQLRVH LALGHPI+G Sbjct: 121 DWENRPRQKICYERGKKATTHYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPIIG 180 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYA+P A+++APRL LHAE LTI HP MTF F Sbjct: 181 DKFYANPLAKSLAPRLCLHAESLTIAHPISAELMTFNTEPTF 222 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 16/223 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ + I+Y+D+ + V+NK +G++ P V + + V Sbjct: 94 PENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGINGEIRPGIV 153 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++++A A +L + F ++ KK Y+A + G + G + + D Sbjct: 154 HRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIVTQIGRDKN 213 Query: 121 NRPKQKVCYE--TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K V + +GK A T YEV+ + V + TGR+HQ+RVHM LG+PILGD Sbjct: 214 DRKKMTVINDLNSGKTAITNYEVISQ-TEKFTLVKVHIETGRTHQIRVHMKHLGYPILGD 272 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + R +LHA L HP ++ F A P DF Sbjct: 273 SVYGRTDTE---KRQMLHAYKLEFQHPITEENLEFIAKLPEDF 312 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRL 63 P+ L I+Y+DD ++VVNKP+GL+ P + + P+A VHRL Sbjct: 100 PEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRL 159 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++VVA T A+ L Q +ER K+ Y A G G ++ + D NR Sbjct: 160 DKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFD-GKIETQIGRDPHNRL 218 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 K V GKPA T +V+E + + + TGR+HQ+RVHM HP+ GD Y + Sbjct: 219 KMAVVKFGGKPAVTHVKVLERYLAH-SYIECSLETGRTHQIRVHMREANHPLAGDPVYGN 277 Query: 184 PEA----------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P +++ R LHA L+ THP G +++F+AP Sbjct: 278 PRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIP 322 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 114/224 (50%), Gaps = 13/224 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L I+Y+D I+V+NK G+++ P V + + V Sbjct: 74 PEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V+A A + L +QF++R +K Y+ V G P EG +++ + + Sbjct: 134 HRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPV 193 Query: 121 NRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V E GKPA T Y+VV D A V P TGR+HQ+RVHM +GHP++GD Sbjct: 194 LRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIRVHMKYIGHPLMGDE 253 Query: 180 FYASPEARAM--APRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + R +LHA L+ HP G + F A P DF Sbjct: 254 VYGRAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDF 297 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 288 bits (739), Expect = 7e-77, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 26/235 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------------- 55 P+ L ILY+D+ ++V++KP GL+ P +++ + + Sbjct: 90 PENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSG-TLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 56 --------QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 +A VHRLD TSGV+VV T++ +L QF++R K+Y+A V G Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 G ++ P+ +R K V + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 209 RGEINAPIGRSTHDRKKFTV-RQDGKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVH 267 Query: 168 MLALGHPILGDRFYASP-EARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 LG P+LGD Y S PR +LHA L+ HP+ + M F+A P DF Sbjct: 268 FRYLGFPLLGDAVYGSKGTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAPLPPDF 322 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 13/225 (5%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAES 59 PQ+ +Y+DD ++V++KP G++ PG V + D + Sbjct: 89 EPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRPGI 148 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG +VVA + + R L F+ER+ K Y A V G P EG + P+ Sbjct: 149 VHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGRHS 208 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K + TGK A T ++VVE + + + TGR+HQ+RVHM ++G PI Sbjct: 209 VHRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGRTHQIRVHMSSIGCPIA 268 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 GD+ Y S R +LHA L + HP G +M+F AP DF Sbjct: 269 GDQVYGSKRQNPAFARQMLHASRLRLPHPVTGRTMSFTAPLWQDF 313 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DYPQAE 58 P+ L I+++DD ++VVNKPSG++ P + V + + + Sbjct: 75 PENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++V+A ++L Q E + ++Y+A V GH + G+VD PL Sbjct: 135 LVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRH 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR K+ V + GK A T +EV++ +D + V + TGR+HQ+R HM + HPI+ D Sbjct: 195 QTNRLKR-VVEKGGKNAITHFEVLDSFSD-YSLVSCRLETGRTHQIRAHMEFIKHPIVND 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y A LHA L+ THP G ++ F+ P +F Sbjct: 253 PLYHPKGKNATEFGQFLHARTLSFTHPLTGETLNFQVEPPKEF 295 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------YPQAESVHR 62 + L ++Y+D I V+NKP+G++ P V + R + VHR Sbjct: 87 EPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHR 146 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++V+A A R L Q + R +K Y A V G P P G +D P+ D +R Sbjct: 147 LDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRP-PETGTIDAPIGRDPRDR 205 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + V G+PA+T Y +++ D + + ++ TGR+HQ+RVH+ LG+PI+GD Y Sbjct: 206 LRMAVV-PDGRPARTHYRLLDTFGD-YSLLEVQLETGRTHQIRVHLRHLGYPIVGDPVYG 263 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA L + HP G F AP Sbjct: 264 PRRSHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLP 299 >UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q2CAH0_9RHOB Length = 215 Score = 286 bits (733), Expect = 3e-76, Method: Composition-based stats. Identities = 118/215 (54%), Positives = 148/215 (68%), Gaps = 3/215 (1%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLD 64 +Y+PP + L +L++D +++V+KP+GLLSVPG+ E D ++ R+Q +P A VHRLD Sbjct: 4 DYDPP-DVPLAVLHEDHEVVLVDKPAGLLSVPGKGEHLADCLLARVQAAFPTALLVHRLD 62 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSGV++ ALT A+R L QF +R+ +K YVARV G + G VDLPLI DWPNRPK Sbjct: 63 RDTSGVMIFALTPHAQRHLGLQFEKRQTRKTYVARVAGRIADKTGTVDLPLIVDWPNRPK 122 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 Q V +E GKPA T++ VV A+D RV L P TGRSHQLRVHMLALGHPILGD FYA Sbjct: 123 QMVDHENGKPAVTDWRVV-RASDAETRVRLFPKTGRSHQLRVHMLALGHPILGDPFYAEG 181 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ARA PR++LH+E L HP G M APA F Sbjct: 182 PARAH-PRMMLHSETLQFRHPDGGRGMRITAPAPF 215 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 9/219 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAES 59 P+ L + ++D ++VVNKP GL+ P V + + Sbjct: 75 EPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPGI 134 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG+++VA AA L Q ++R ++Y A V G P G VD P+ Sbjct: 135 VHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRHP 194 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R + V +G+ A+T Y VV D + + L TGR+HQ+RVHM +GHP++GD Sbjct: 195 RDRQRMAVTPRSGRAARTHYRVVRRF-DKFSLLELTLDTGRTHQIRVHMAHVGHPLVGDL 253 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y LHA L HP G + F+AP Sbjct: 254 KYGHARPELGLEGQFLHAGTLGFRHPRTGEVLVFEAPLP 292 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 285 bits (731), Expect = 6e-76, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 25/236 (10%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAE 58 PQ+ L ++Y+D+ ++V++KP+G++ P + V + + Sbjct: 259 EPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIGGVKRPG 318 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++V A T AA R L QF ++ Y A VWG PSP +G ++ + + Sbjct: 319 IVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRN 378 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V GKPA T Y V++ A + V + TGR+HQ+RVHM GHP++G Sbjct: 379 PNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTTQGHPLVG 438 Query: 178 DRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 D Y A PR LHA +L +HP G + F++ P D Sbjct: 439 DPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGMPLD 494 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 26/235 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------------- 55 P++ L ILY+DD ++V++KP GL+ P +++ + + Sbjct: 90 PEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASG-TLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 56 --------QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 +A VHRLD TSGV+VV ++ +L QF++R K+Y+A V G Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 G ++ P+ +R K V + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 209 RGEINAPIGRSTHDRKKFAV-RQDGKPSLTRYRVLETYHENYSLLEVTLLTGRTHQIRVH 267 Query: 168 MLALGHPILGDRFYASP-EARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 LG P+LGD Y S PR +LHA L HP M F+A P DF Sbjct: 268 FRHLGFPLLGDAVYGSKGMENRNFPRQMLHAWKLAFQHPRSAAKMEFEAPLPPDF 322 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 103/219 (47%), Gaps = 11/219 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 +E LY+D+ I+V+ KP GL+ P V + + VH Sbjct: 89 EEVEFTPLYEDEDILVLVKPPGLVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVH 148 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG +VVA A L +QF+ RE +K Y A + G + G V LP+ + Sbjct: 149 RLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVH 208 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V E G+ A T + V + + V L TGR+HQ+RVHM ALGHP+ GDR Y Sbjct: 209 RKKMAVRREGGREAVTHWRVRQRFSAGYTLVELLLETGRTHQIRVHMAALGHPLAGDRLY 268 Query: 182 ASPEARAM---APRLLLHAEMLTITHPAYGNSMTFKAPA 217 + M R LHA L HP G +TF AP Sbjct: 269 GRNPEKDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAPL 307 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 107/242 (44%), Gaps = 33/242 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L ILY+DD I+V+NKP+GL+ P V + + V Sbjct: 86 ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIV 145 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD T+GV+VVA A ++L QF + K+ Y A VWG P P G+++ PL Sbjct: 146 HRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLG 205 Query: 117 CDWPNRPKQKV---CYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHML 169 NR ++ V +T A T Y+ +E N + + TGR+HQ+RVHM Sbjct: 206 RCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMA 265 Query: 170 ALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 G+P++GD Y A R LHA L+ +HP M F+ P Sbjct: 266 HKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVP 325 Query: 217 AD 218 Sbjct: 326 IP 327 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 112/246 (45%), Gaps = 31/246 (12%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMT---------RIQRDY 54 E P+E + ++Y+DD +MVVNK +G++ PG H + + Sbjct: 121 ETSIKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEFDAND 180 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 P+ VHR+D TSG++VVA T A+ L +QF + + Y A VWG+ EG ++ Sbjct: 181 PEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGRIEGN 240 Query: 115 LICDWPNRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + D NR + KV GK A T Y+V+E T V TGR+HQ+R HM + Sbjct: 241 IGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFG-YTTLVQCVLETGRTHQIRAHMKHI 299 Query: 172 GHPILGDRFYASPEAR----------------AMAPRLLLHAEMLTITHPAYGNSMTFKA 215 GHP+ D Y E + PR LHA+ L HP M F + Sbjct: 300 GHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMDFDS 359 Query: 216 --PADF 219 P DF Sbjct: 360 EWPNDF 365 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 283 bits (726), Expect = 2e-75, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 10/218 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI---------QRDYPQAESV 60 Q L ILY+D+ ++V+NK G++ PG V + D + V Sbjct: 76 QNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFHCGEQLRSVGDPERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V A ++ A L+++ + ++ Y+A V G G++ LPL Sbjct: 136 HRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQMEGDTGVIRLPLGRSTK 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V +ETG+PA T + V+EY + + + K TGR+HQ+RVHM + H ++ D Sbjct: 196 DRMKWDVLHETGRPAVTHFHVIEYLP-HYSWIECKLETGRTHQIRVHMAHIRHAVVNDPL 254 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + LH+ L + HP G M F+AP Sbjct: 255 YGWKKDHFPIKGQALHSHTLELCHPITGEVMHFEAPVP 292 >UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q489H0_COLP3 Length = 567 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 14/220 (6%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHR 62 NP + L I++QD+H++VVNKP+GLLSVPG+ KDSV TRI+ +PQA VHR Sbjct: 356 INPAEGIDLEIVFQDEHVVVVNKPAGLLSVPGK--SIKDSVYTRIKTQFPQASGGLIVHR 413 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LDMATSG++++AL + A + L++QF +E K+YVA + G G + LPL D+ +R Sbjct: 414 LDMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGDFDDR 473 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDR 179 PKQ VC+E GK A+T ++++E DNT+++ L PITGR+HQLR+H L PI+GD Sbjct: 474 PKQMVCHEHGKYAETHWQLIEEV-DNTSKLFLYPITGRTHQLRMHCAHPDGLNLPIIGDS 532 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A RL LHA+ L+ THP +TF+ +F Sbjct: 533 LYGHS-----ADRLHLHAQRLSFTHPITKELLTFEVAENF 567 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 113/233 (48%), Gaps = 21/233 (9%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQ 56 +N PQ+ L I+++D+H++VVNKP+G++ P V + + Sbjct: 74 HNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVAR 133 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++VVA T A L QF + ++Y A V GHPS +G VD PL Sbjct: 134 PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPS-LQGHVDAPLA 192 Query: 117 CDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 NR K + + GK A T Y ++ N + + + TGR+HQ+RVHM ++GH + Sbjct: 193 RSSVNRQKMAIVSDGRGKRAVTHYRMI-TPLKNASLIECRLETGRTHQVRVHMSSIGHSL 251 Query: 176 LGDRFYASPEARAMA-------PRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 LGD Y + A R LHA L HP G + F A P D Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDM 304 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 282 bits (724), Expect = 4e-75, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 110/240 (45%), Gaps = 26/240 (10%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI--QRDYP-----Q 56 E P++ L ++Y+D +MVVNKP G++ PG + + +D P + Sbjct: 122 EFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVKDLPLNADER 181 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++VVA T A L +QF ++ +++YVA VWG+ +G V + Sbjct: 182 PGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIG 241 Query: 117 CDWPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 NR + V + GK A T Y+V+E V TGR+HQ+R HM +GH Sbjct: 242 RHPKNRLQMAVFPDGDQGKEAVTHYKVMERLG-YVTLVSCVLETGRTHQIRAHMKHIGHT 300 Query: 175 ILGDRFYASPE----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + D Y + A PR LHA+ L HP+ G M F P Sbjct: 301 LFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGELMRFNTPIP 360 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 21/234 (8%) Query: 3 MENYNPPQEPW---------LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD 53 +E Y PP EP + ++Y+DD I+V +KP G+++ P EH +++ ++ Sbjct: 68 LEVYLPPVEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHG-TLVNALKAI 126 Query: 54 YP--------QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS 105 P + VHRLD TSG++VVA T+AA L Q++ R K+Y A V G Sbjct: 127 RPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVE 186 Query: 106 PAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 165 P G +D P+ D R K V G+PA T + V+E + + TGR+HQ+R Sbjct: 187 PDSGTIDAPISRDPVERTKMAVV-SWGRPAITHFRVLERFR-CATLLDVTIETGRTHQIR 244 Query: 166 VHMLALGHPILGDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 VH +GHP++GD Y PR LHA L HP G ++ + P Sbjct: 245 VHCAFIGHPVVGDSQYGGHRPFCVPVPRQFLHARYLRFVHPTTGQAIELETPLP 298 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 282 bits (722), Expect = 7e-75, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 18/226 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD---------YPQAES 59 PQ L I+Y+D++++VVNKP ++ PG ++D+++ + Y + Sbjct: 86 PQSIPLDIVYEDEYLLVVNKPRNMVVHPGAG-NYRDTMVNALLYHCQNLSDGTSYERPGI 144 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG++VVA L + + R + Y+A V G S + +DLP+ D Sbjct: 145 VHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDLPIGRDP 204 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYA--ADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 NR K V + GK A T+ E++ + + + TGR+HQ+RVH+ LG+P+LG Sbjct: 205 RNRKKMAVVH-GGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVHLSHLGYPLLG 263 Query: 178 DRFYASPEARAM-----APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + + LH+ L THP + +M F+AP Sbjct: 264 DPVYRGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPLP 309 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 282 bits (722), Expect = 8e-75, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 14/221 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P+E +L IL+ D+H+ ++NKP GL P + +++ R+ + +P + V Sbjct: 78 PEEGFLEILFSDEHLAIINKPPGLTVHPAP-SCQESTLVHRLLKYFPKLIEQGGLRPGIV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++ +ALT+ +L + F +R+ K+Y+A V G PS EG + +PL D Sbjct: 137 HRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPS-MEGYIAVPLGRDPK 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + K V GKPA TE+ V+ ++ + + L TGR+HQ+RVHM +GHP++GD+ Sbjct: 196 TKVKVAV-NPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMKHIGHPLVGDK 254 Query: 180 FYASPEARAM--APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 YA R +LHA L+ HP G M F P Sbjct: 255 LYAGGHVNKTFQCNRQMLHAWKLSFEHPITGKKMNFLCPPP 295 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 22/232 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P+E L I+Y D I V+NKP+GL + P +++ R+ +P + V Sbjct: 89 PEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTG-TLVHRMIHHFPEIRDMDEWRPGIV 147 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+I VAL + + F +RE K Y+A V G P G +D P+ Sbjct: 148 HRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREFGEIDQPMGRHPV 207 Query: 121 NRPKQKVCYETGKPAQTEYEVVEY-AADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 ++ K V + G+ A++EYEV+ A + V +K TGR+HQ+RVHM +GHP++GD+ Sbjct: 208 HKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQIRVHMAHIGHPLVGDQ 267 Query: 180 FYAS----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y S P+ +A R +LHA L+ THP ++F P DF Sbjct: 268 VYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFTQAPPEDF 319 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 9/222 (4%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------Q 56 N ++ L I+YQDD ++V+NK + + P + V + D + Sbjct: 86 NITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELR 145 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D T+G+++VA + L F+ + K+Y+A V G P +GL+D P+ Sbjct: 146 PGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAPIG 205 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V + K A T +EVVE NT + + TGR+HQ+RVH + HP+L Sbjct: 206 RSQTDRKKMSVTAKNSKHAITTFEVVERFLKNT-LIKCQIQTGRTHQIRVHFNYINHPVL 264 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y LHA L THP + +P Sbjct: 265 NDPIYGKKHQEFTDFGQYLHAYKLKFTHPITKKEIELISPLP 306 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 97/215 (45%), Positives = 127/215 (59%), Gaps = 15/215 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMA 66 +E L ILY+DD+++V+NKP G+LSVPG+ + DSV R+ YP+A VHRLDMA Sbjct: 336 RETKLDILYEDDYLLVINKPEGMLSVPGKGD--ADSVYQRLSILYPEATGPIIVHRLDMA 393 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++ A TK A + L+ QF+ R +K+Y+A + G EG + LPL D +RP+Q Sbjct: 394 TSGLLLAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQI 453 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYAS 183 V E GKPA T Y V+E + T + P TGR+HQLRVH L PILGD Y Sbjct: 454 VSEEFGKPALTHYRVLERTSGKT-LIAFYPQTGRTHQLRVHAAHPLGLHCPILGDELYGR 512 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTF-KAPA 217 A RL LHAE L THP + K+PA Sbjct: 513 K-----AERLYLHAEYLAFTHPITSERIEIQKSPA 542 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 14/218 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAESV 60 ++ L I++QD ++++NKP GL P +++ + P + V Sbjct: 76 EDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDH-TLINGVLALEPKMEDFDDPLRPGIV 134 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++VA + L QF+ER +K Y+ V G PAEG ++ PL D Sbjct: 135 HRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQ 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NR K V G+ A+T Y+V+ Y + + +K TGR+HQ+RVH A+GHP+ GD Sbjct: 195 NRQKIAVV-SNGRHARTGYKVLRYI-QGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAI 252 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y E R LHA L+ T P+ G ++ F +P Sbjct: 253 YGQKET--WLKRQFLHAHRLSFTLPSNGQTVEFTSPLP 288 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 28/237 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------------D 53 P+E L IL++D+H++V+NKP+G++ PG H V + Sbjct: 82 PEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGGLSGIGG 141 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSG++V A A L RQF +R ++Y+A G P PA+G ++ Sbjct: 142 VIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPAQGRIEG 201 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 + +R K V + G+ A T Y+V+E A + + +GR+HQ+RVHM +GH Sbjct: 202 AIGRHPIHRTKMAVVEQGGRAAATRYKVLEPLGQ-FALIRCRLESGRTHQIRVHMTHIGH 260 Query: 174 PILGDRFYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P++GD Y + + R LHA LT HP G M+FK P Sbjct: 261 PLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKRPPP 317 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 279 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 17/233 (7%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + ++ P+ L I+Y+D+ I+V+NKP+GL+ P + V + Sbjct: 68 VEEDSLPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTG 127 Query: 53 -DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 D+ + VHR+D TSG++VVA AA + L Q + ++ Y+A V G +G + Sbjct: 128 SDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTI 187 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + PL D NR + V E GK A T ++V+E +N + L+ TGR+HQ+RVH+ + Sbjct: 188 EAPLQRDPANRLRWTVAKE-GKYALTRFQVMENF-ENATLLDLELETGRTHQIRVHLEFI 245 Query: 172 GHPILGDRFYASPEARAMAP------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 GHP++GD Y LLHA L + HP G + FKAP Sbjct: 246 GHPLVGDPVYRKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLP 298 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 278 bits (713), Expect = 8e-74, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------- 52 N P+ L I+Y+DD IMV+NKP GL+ P V + Sbjct: 64 EETNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHND 123 Query: 53 DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 D + +HR+D TSG+I+VA T A + L + + + K++Y+A V G +G++D Sbjct: 124 DPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVID 183 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ R K V TGKPA T +EV+ D+T + K TGR+HQ+RVH+ + Sbjct: 184 APIARHPKIRTKMAVV-ATGKPAITHFEVMRTFRDHT-LLHCKLETGRTHQIRVHLAYIK 241 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP+ GD Y + +A+ + LLHA L HP M +AP Sbjct: 242 HPVTGDPLYGT-KAKILKDGQLLHAFRLEFVHPITKKVMMLEAPLP 286 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 278 bits (713), Expect = 8e-74, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 12/227 (5%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 +E PQ+ + I+Y+D+ ++++NKP G++ P + V + R Sbjct: 68 VETEVKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGE 127 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + +HRLD T+G++++A + ++L Q + R ++ Y A G E ++ P Sbjct: 128 LRPGIIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAP 187 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + NR K + GK A T ++V+E + TGR+HQ+RVH+ LG P Sbjct: 188 IGRHPINRKKMAIV-PYGKIAITNFKVLERFK-GYTLISADLETGRTHQIRVHISHLGFP 245 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK--APADF 219 I+GD Y + + LLHA+ ++ HP G M F+ P +F Sbjct: 246 IVGDEVYGRIDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLPEEF 292 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 16/223 (7%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRLD 64 ++ L I+++DD I+V++KP ++ PG + R P+A VHRLD Sbjct: 84 EDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLD 143 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++V A + A L +Q ER+ ++Y+A V G +G ++ P+ D NR K Sbjct: 144 KDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQ-QGTINQPIGRDPTNRTK 202 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + Y GK A T Y +E D + + TGR+HQ+RVHM ++ HP++GD+ Y Sbjct: 203 MAINYR-GKEAITYYTPIE-VYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNKS 260 Query: 185 EAR------AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + + R LHA L+ HP + FK+ P D Sbjct: 261 STKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 13/221 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ + ILY+D I V++K +G++ P E V + + V Sbjct: 72 PENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEIRPGIV 131 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++++A A L F +K Y+A + G + G ++ + D Sbjct: 132 HRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLIGRDPK 191 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V GK A T ++V++ + + V + TGR+HQ+RVHM LG+P+LGD Sbjct: 192 DRKKMAVVKTNGKTAITYFQVLD-KNEKFSLVKVNIQTGRTHQIRVHMKYLGYPVLGDSV 250 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 Y +A R +LHA L HP +M + P DF Sbjct: 251 YGRD--NKIAGRQMLHAYKLEFLHPVTQKAMKIISELPQDF 289 >UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=Q28K21_JANSC Length = 217 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 117/214 (54%), Positives = 148/214 (69%), Gaps = 3/214 (1%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 Y PP + L I+++D +++VNKP+GLLSVPG+ E D ++ R++ +P+ VHRLDM Sbjct: 7 YAPPTD-PLDIIHEDHDLLLVNKPAGLLSVPGKGEHLSDCLIARLKIAFPEVLLVHRLDM 65 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+V A T A+R L QF +R KK YVARVWG + +G +DLPLI DWPNRP Q Sbjct: 66 DTSGVMVFARTPHAQRHLGLQFEKRHTKKAYVARVWGEVTDKDGHIDLPLIVDWPNRPLQ 125 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V +ETGKPAQT++ + D T R+ L P TGRSHQLRVHMLA+GHPILGD FYA+ Sbjct: 126 HVNHETGKPAQTDWRRI-RVEDGTTRMRLFPKTGRSHQLRVHMLAIGHPILGDPFYATGP 184 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A A PRL+LHAE L + HP G MTF+A F Sbjct: 185 ALAF-PRLMLHAESLKLRHPDGGIGMTFRARVPF 217 >UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q0VQA6_ALCBS Length = 229 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 104/204 (50%), Positives = 133/204 (65%), Gaps = 1/204 (0%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 +Y+D+H++++NKP+ LLSVPGR E+KD + R+Q+ YP VHRLD+ TSG++V LT Sbjct: 26 IYRDEHLLLINKPAYLLSVPGRAPENKDCAIRRLQQRYPDIRLVHRLDLDTSGIMVFGLT 85 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 A+ +L R F+ R KK+Y A V G G +DLPLI DWP RP QKVC+ETGK A Sbjct: 86 AFAQSKLSRLFQLRTVKKRYQAIVHGLVEKNAGSIDLPLIADWPKRPLQKVCHETGKNAL 145 Query: 137 TEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 T Y V+E N R+ L P+TGRSHQLR+H LGHPI+G YA E A++PRLLL Sbjct: 146 THYRVLERDIPGNRTRLALSPVTGRSHQLRIHCRELGHPIIGCDMYAPAEIEALSPRLLL 205 Query: 196 HAEMLTITHPAYGNSMTFKAPADF 219 HAE L HP G F +P F Sbjct: 206 HAEWLAFNHPLTGLWQEFTSPCPF 229 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 116/245 (47%), Gaps = 32/245 (13%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--------- 54 +N PP++ + I+Y+DD I ++NKPS ++ PG+ + ++ +Q + Sbjct: 83 DNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKG-NYAGTLAGALQYHFDQLSDVAGQ 141 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG++VVA +L QF +R+ +K+Y A VWG +D Sbjct: 142 YRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTF 201 Query: 115 LICDWPNRPKQKVCYETG--KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 + R K VC E G + A T YEV+E V LKP TGR+HQLRVHM +G Sbjct: 202 MCVHPRAREKMIVCDEGGNARNAFTYYEVIERY-QAFTYVRLKPRTGRTHQLRVHMQHIG 260 Query: 173 HPILGDRFYASP-------------------EARAMAPRLLLHAEMLTITHPAYGNSMTF 213 H I+ DR Y E+ + R LHA L HP G M F Sbjct: 261 HSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPMKF 320 Query: 214 KAPAD 218 +AP Sbjct: 321 EAPLP 325 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 115/219 (52%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 P++ L ++Y+D+H++VVNKP+GL+ P + + RD P+A VHRL Sbjct: 120 PEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHRL 179 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP-AEGLVDLPLICDWPNR 122 D TSG++VVA ++AA L R+ +QY+A P VD P+ D NR Sbjct: 180 DKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHREVDAPIGRDPRNR 239 Query: 123 PKQKVCY---ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + V GK A+T+ +++ + + V TGR+HQ+RVHM +LGHP++ D Sbjct: 240 LRMAVVDLAQHAGKTARTDIDLLA-GNEEVSLVRCTLHTGRTHQIRVHMASLGHPLVADA 298 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y EA MA R LHA L THP G ++ +AP Sbjct: 299 VYGGKEAGGMA-RQALHAFRLAFTHPMTGQALVLRAPLP 336 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRL 63 P+ L I+++D ++V+NKP+GL+ P + + P+A VHRL Sbjct: 110 PEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRAGIVHRL 169 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++VVA T A +L RQ + R K++Y+A VWG P+ G +D + +R Sbjct: 170 DKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNI-TGKIDASIGRHARDRI 228 Query: 124 KQKVCYE-TGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 K V T KPA T ++ + + ++ + TGR+HQ+RVHM ++G ++GD Sbjct: 229 KMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGDG 288 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + PR LHA L + HP G ++ + + P DF Sbjct: 289 LYGKQHLTTVFPRQALHARRLGLIHPVSGEAVEWSSELPQDF 330 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 109/244 (44%), Gaps = 35/244 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L ILY+DDH++V+NKP+GL+ PG V I + V Sbjct: 77 EAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGVV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSGV+VVA A + L QF + ++Y A +WG P +D L Sbjct: 137 HRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLG 196 Query: 117 CDWPNRPKQKVCY---ETGKPAQTEYEVVEYAADNT------ARVVLKPITGRSHQLRVH 167 NR KQ V + + A T + ++E + + + + TGR+HQ+RVH Sbjct: 197 RSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASLLECRLETGRTHQIRVH 256 Query: 168 MLALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 M +GHP++GD Y + A R LHA LT HP+ G ++F Sbjct: 257 MAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVISFS 316 Query: 215 APAD 218 AP Sbjct: 317 APLP 320 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 277 bits (709), Expect = 2e-73, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 101/230 (43%), Gaps = 21/230 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ LVILY+D H++V++KP G++ P V + + VH Sbjct: 77 EDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDLSGIGGELRPGIVH 136 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGV+V T +A + L QF+ ++Y+A + G + G +D P+ + Sbjct: 137 RLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRGSIDRPIGRHPTH 196 Query: 122 RPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K TG+ A T + V+ D V L TGR+HQ+RVH HP+LGD Sbjct: 197 RKKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQIRVHFSEQQHPLLGDPV 256 Query: 181 YASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + R LHA +L HP G + F +P Sbjct: 257 YGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSSPLP 306 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 108/230 (46%), Gaps = 21/230 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 PQ+ L ILY+D ++V++KP+GL+ P V + + V Sbjct: 80 PQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPGIV 139 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++VVA T AA + L QF++ + K Y A V+G P G +DLP+ Sbjct: 140 HRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRHPV 199 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K GK A T + + E + + +TGR+HQ+RVH+ A+GHP++GD Sbjct: 200 ERKKMSTKSRRGKEAATRWRIAERFGV-ATLLNVDIVTGRTHQIRVHLAAIGHPVVGDAV 258 Query: 181 YASPEARAMA------------PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S + R LHA L+ THP + F AP Sbjct: 259 YGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLP 308 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 276 bits (707), Expect = 4e-73, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 27/236 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P+E L +LY+D H++V+NKP+GL P + +++ R+ +P + V Sbjct: 114 PEEGELEVLYRDAHMLVINKPAGLTVHPAP-SCPEGTLVHRLLHHFPELEAQEGFRPGIV 172 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++++ALT+ A L F R K+Y+A V G P G +D P+ Sbjct: 173 HRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIPEGDSGEIDAPVGRHPT 232 Query: 121 NRPKQKVCYETGKPAQTEYEVV-----EYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 ++ + V G+ A + + V+ V ++ TGR+HQ+RVHM GHP+ Sbjct: 233 HKTRMAVVR-GGREALSTWRVLLADPHGGGGTGWTLVAVRIHTGRTHQIRVHMQHTGHPL 291 Query: 176 LGDRFYASPEARA----------MAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 GD Y R A R +LHA ++ HP G M F PADF Sbjct: 292 WGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVTGAPMQFTLPPPADF 347 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 276 bits (707), Expect = 4e-73, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 14/222 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRL 63 P+E L I+++DD ++V++K +GL+ PG + + P+A VHRL Sbjct: 102 PEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIVHRL 161 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G++VVA T A+ +L RQ + R K+ Y A V G A G+VD P+ R Sbjct: 162 DKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGA-GIVDAPIGRHPTVRT 220 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + V G+PA+T Y V+E T + TGR+HQ+RVHM ++ HP++GD Y Sbjct: 221 RMAVV-SGGRPARTHYRVLERFVACT-LIECALETGRTHQIRVHMTSIAHPLVGDPIYGG 278 Query: 184 PEAR----AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +R A+ PR LHA L + HPA G +M +++ PAD Sbjct: 279 GASRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADM 320 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 275 bits (706), Expect = 5e-73, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------- 54 E+ P++ L I+Y+DD I+VVNKP+G++ PG V + RD Sbjct: 78 ADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTFSAMD 137 Query: 55 ---PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 + VHRLD TSGVI+VA + +L R F R+ +K YVA G + Sbjct: 138 DGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTI 197 Query: 112 DLPLICDWPNRPKQKVCYET--GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML 169 + NR K + ++ GK A + Y+V+ + V LK TGR+HQ+RVHM Sbjct: 198 TSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLA-DNNGATLVKLKIDTGRTHQIRVHMS 256 Query: 170 ALGHPILGDRFYASP--EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 + HP++GD+ Y + + R +LHA I HP MTF AP DF Sbjct: 257 GINHPVVGDKLYGVRRLDEKESPDRHILHAWRTRIIHPGTQEIMTFTAPLHDDF 310 >UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A4VJG2_PSEU5 Length = 244 Score = 275 bits (706), Expect = 5e-73, Method: Composition-based stats. Identities = 106/207 (51%), Positives = 141/207 (68%), Gaps = 2/207 (0%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-DYPQAESVHRLDMATSGVIV 72 + I++QD ++V++KP+ LLSVPGR E+++D ++TR+Q YP+A VHRLD TSG+IV Sbjct: 39 IQIVHQDAALLVIDKPTLLLSVPGRAEDNRDCLVTRLQENGYPEARIVHRLDWETSGLIV 98 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 +A + REL RQF +RE +K Y A WG P G +DLPL D P +P+ V E G Sbjct: 99 LARDADSHRELSRQFHDRETEKAYTALCWGQPDADSGSIDLPLRYDPPTKPRHVVDPELG 158 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 K A T + V+E D+ +RV L PITGRSHQLRVHML++GHP+LGDR YA +A R Sbjct: 159 KHALTFWRVLERCGDH-SRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAHEQALRAHER 217 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA MLT+THP G + F++PA F Sbjct: 218 LCLHASMLTLTHPQTGARLRFESPAPF 244 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 275 bits (706), Expect = 5e-73, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 20/231 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVH 61 + P++ L I+Y+DD ++V+NKP G++ PG V + Q P+A VH Sbjct: 174 DQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLPRAGLVH 233 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP--AEGLVDLPLICDW 119 R+D TSG++V+ TKAA+ EL+ Q +++ + Y V G + +D P+ Sbjct: 234 RIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDAPIGRHR 293 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V TGK A T + +D + + ++ TGR+HQ+RVH+ +GHPI+GD Sbjct: 294 TQRTKMTV-TSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGHPIIGDD 352 Query: 180 FYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + +A PR LHA L HP G S+ AP Sbjct: 353 IYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLP 403 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 275 bits (706), Expect = 5e-73, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 107/243 (44%), Gaps = 34/243 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 ++ L +LY+D ++V++KP+GL+ PG V I + V Sbjct: 86 EDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIV 145 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRERE----PKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSGV+VVA A R L QF + ++ Y A VWG P G +D L Sbjct: 146 HRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPRGLRGTIDAALG 205 Query: 117 C--DWPNRPKQKVCYETGKPAQTEYEVVEYAADN------TARVVLKPITGRSHQLRVHM 168 D R ++ + + A T Y+V+E + + V + TGR+HQ+RVHM Sbjct: 206 RAGDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCLASLVECRLETGRTHQIRVHM 265 Query: 169 LALGHPILGDRFYA-------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 +GHP++GD Y + R LHA +L HP G+ M F A Sbjct: 266 AHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEHPTTGDVMHFAA 325 Query: 216 PAD 218 P Sbjct: 326 PIP 328 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 275 bits (704), Expect = 8e-73, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 106/241 (43%), Gaps = 32/241 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 Q L I+Y+D ++VV KP+GL+ P V + + V Sbjct: 222 QAIPLEIVYEDADLIVVMKPAGLVVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIV 281 Query: 61 HRLDMATSGVIVVALTKAAERELKRQF----REREPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSG++VVA T A + L QF R+ + + Y A WG P +G VD + Sbjct: 282 HRLDKETSGLMVVAKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIA 341 Query: 117 CDWPNRPKQKVCYETGKP-----AQTEYEV-VEYAADNTARVVLKPITGRSHQLRVHMLA 170 NR K + G+ A T Y V +YA A V + TGR+HQ+RVHM A Sbjct: 342 RSSHNRSKMATVRDRGEETGGRIAITHYTVKTDYADGLVAEVECRLETGRTHQIRVHMTA 401 Query: 171 LGHPILGDRFYASP-------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 LGHP+LGD Y + A R LHA L HP G M+F AP Sbjct: 402 LGHPLLGDATYGTGMKSRKSKLSPEAQAALERLNRQALHAHHLGFEHPVAGEKMSFDAPL 461 Query: 218 D 218 Sbjct: 462 P 462 >UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID=Q12L72_SHEDO Length = 230 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 107/219 (48%), Positives = 136/219 (62%), Gaps = 2/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + NY PP PWL I Y D I+V+NKPSGLLS PGR E D+ +TR+QR YP+ + Sbjct: 14 MQVFNYQPPSIPWLDIRYLDRDIIVINKPSGLLSNPGRAPETYDTAITRLQRLYPETILI 73 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++ A K AE LK QF+ R+ KK Y+A V G +G V+ PL D Sbjct: 74 HRLDCDTSGIMIFARNKKAESNLKTQFQNRQAKKVYIAEVSGCFEHQDGKVNFPLGPDPM 133 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 P Q+V E+GKPA T Y ++E+ A T+ V LKP TGR+HQLRVHM ALGH I+GD F Sbjct: 134 TPPFQQVI-ESGKPALTYYRLLEHRAS-TSLVELKPHTGRTHQLRVHMKALGHTIIGDEF 191 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A + RL LHA+ LT+ HP + F + F Sbjct: 192 YGDETVIAASHRLNLHAQSLTLLHPFKQIEIQFFSQHPF 230 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 108/256 (42%), Gaps = 52/256 (20%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI----------------------- 50 L I+Y+D +++VVNK +GL+ P R V + Sbjct: 86 LDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDLPEDDEIG 145 Query: 51 -----------QRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVAR 99 + + P+ VHRLD T+G+IVVA L RQF R + Y+A Sbjct: 146 LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTIARTYLAI 205 Query: 100 VWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARVVLKPIT 158 VWG P P G ++ + D +R + V + GK A T YEVVE A V K T Sbjct: 206 VWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVEALPA-AALVRFKLET 264 Query: 159 GRSHQLRVHMLALGHPILGDRFYASPEAR----------------AMAPRLLLHAEMLTI 202 GR+HQ+RVH +GHP+LGD Y R A R LHA L Sbjct: 265 GRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFARLTRQALHAHTLGF 324 Query: 203 THPAYGNSMTFKAPAD 218 HP G + F+AP Sbjct: 325 RHPRTGEWLEFEAPLP 340 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 22/238 (9%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYP 55 + + + P+ L I+Y+D+ I+V+NKP G++ PG V + + Sbjct: 102 LEAQTNSQPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLYHSPKSAELS 161 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHR+D TSG++VVA A+ L +Q ++ + Y +G+ A G +D P+ Sbjct: 162 RAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNII-AGGTIDEPI 220 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K + G+ A T Y V E D RV + TGR+HQ+RVH +GH + Sbjct: 221 KRHPVDRVKMAIL-PGGRDAVTHYNVKERFRD-FTRVQAQLETGRTHQIRVHFSYIGHGL 278 Query: 176 LGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +GD+ Y + E R LHA L + HP G M F+A P DF Sbjct: 279 VGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPWPEDF 336 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 29/239 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRL----EEHKDSVMTRIQRDYP--------- 55 P++ L ++Y+DD + V+NKP+G++ G E ++ +++ + + Sbjct: 77 PEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDM 136 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG+IVVA A R+L QF R K+YVA V G P +G ++LP+ Sbjct: 137 RPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPI 196 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALG 172 D R + G+ A + YEV +E A V +K TGR+HQ+RVHM +LG Sbjct: 197 ARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEVKIETGRTHQIRVHMASLG 256 Query: 173 HPILGDRFYASPEARAMAP-------------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP++GD Y +P + R LHA + + PA G ++ F Sbjct: 257 HPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTKVP 315 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 106/229 (46%), Gaps = 21/229 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q+ L ILY+D I+ VNKP G++ P V + + VH Sbjct: 79 QDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQRPGIVH 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGVI+ A AA L Q +R +K Y+A G G++DLPL + Sbjct: 139 RLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLARHPSD 198 Query: 122 RPKQKVCYE-TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R + V G+ A + + V E D V ++ TGR+HQ+RVH+ AL HP++GD Sbjct: 199 RKRMHVSTPAKGREALSLWTVKERFLD-ATYVKVQIKTGRTHQIRVHLAALHHPVIGDTV 257 Query: 181 YASPEARAMAP-----------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + R P R +LHA +++ THP G +T AP Sbjct: 258 YGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPLP 306 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 16/222 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DYPQAE 58 P++ L ILY+D+H++++NKP G++ P V + D + Sbjct: 82 PEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSDASVDSIRPG 141 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+V A T + +++L F R+ K+Y A G+P E ++ P+ Sbjct: 142 IVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGNPGNCE--LNWPIGRH 199 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R KQ E GK A T E +E + L TGR+HQ+RVH+ GHPILGD Sbjct: 200 PIHR-KQMTVREDGKEALTFCETLE-VGNEICLAKLILSTGRTHQIRVHLKHKGHPILGD 257 Query: 179 RFYASPE--ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S + R A R +LHA L HP + +AP Sbjct: 258 SIYGSKQVNMRYRAERQMLHARKLAFIHPITQQKIEVEAPLP 299 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 114/223 (51%), Gaps = 21/223 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRLD 64 Q+ L I+Y+DDHI+VVNKP+G++ P + + D P+A VHRLD Sbjct: 86 QDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLHDVPRAGIVHRLD 145 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++VVA T A+ L RQ + R K++Y A VWG G+VD PL D +R K Sbjct: 146 KETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQL-WRNGVVDQPLGRDPRSRTK 204 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS- 183 + GKPA T YE++E + T + TGR+HQ+RVHM L P++GD Y Sbjct: 205 MAI-NRMGKPAITRYEILERFSVQT-YLRCNLETGRTHQIRVHMQHLKAPLVGDPVYGFR 262 Query: 184 ------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 +A + R LHA L + HPA M ++ Sbjct: 263 GIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQ 305 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 113/244 (46%), Gaps = 35/244 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L IL++DDHI+VVNKP+GL+ PG V I + V Sbjct: 76 EAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIGGVRRPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSGVIVVA A + L QF + ++Y A +WG P+ G++ L Sbjct: 136 HRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNIGVITASLG 195 Query: 117 CDWPNRPKQKVCYET---GKPAQTEYEVVEYAAD------NTARVVLKPITGRSHQLRVH 167 +R KQ V + + A T + V+E + + + TGR+HQ+RVH Sbjct: 196 RARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLLECRLETGRTHQIRVH 255 Query: 168 MLALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 M +GHP++GD Y + EA + R LHA LT HPA GN M+F Sbjct: 256 MAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHPAKGNIMSFS 315 Query: 215 APAD 218 AP Sbjct: 316 APLP 319 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 29/238 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAE 58 P++ + ILY+DD +MV++K +G++ P + + Sbjct: 72 PEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPG 131 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG+I++A A +L RQF R+ +K Y A VWG P G + + Sbjct: 132 IVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRS 191 Query: 119 WPNRPKQKVCY---ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 NR GK A T+Y+VVE + + + TGR+HQ+RVH+ LGH I Sbjct: 192 HKNRKVMANFPYEGAEGKHAITDYQVVEDLG-YFSLMDVTLHTGRTHQIRVHLQHLGHSI 250 Query: 176 LGDRFYASPEARA---------------MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y R + R LHA+ L P G ++F AP Sbjct: 251 LGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSAPLP 308 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 272 bits (698), Expect = 4e-72, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 126/222 (56%), Gaps = 19/222 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMA 66 ++ L I+Y+D+ ++VVNKP+G+LSVPG+ + DSV R++R YP A VHRLDMA Sbjct: 333 RDAELEIVYEDESLLVVNKPAGMLSVPGKSD--VDSVYQRVRRMYPGATGPMVVHRLDMA 390 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG+++VA TK + L+ QF+ R K+YVA + G EG ++LPL D +RP+Q Sbjct: 391 TSGLMLVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQV 450 Query: 127 VCYETGKPAQTEYEVVEYAADNTAR------VVLKPITGRSHQLRVHMLA---LGHPILG 177 V GKPA T+Y V+ Y V P TGR+HQLRVH L PI+G Sbjct: 451 VDVVHGKPAVTDYRVLRYGGCKGGLRTTPTVVSFVPKTGRTHQLRVHSAHPLGLNAPIVG 510 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D Y A RL LHAE L THP G M + A F Sbjct: 511 DELYGKK-----ADRLYLHAEYLGFTHPVSGVYMEVEKEAGF 547 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 272 bits (697), Expect = 6e-72, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 120/221 (54%), Gaps = 13/221 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P+E L +L+QDDH++V NKP+GL P + +++ R+ +P + V Sbjct: 75 PEEGHLELLWQDDHLVVCNKPAGLTVHPCP-SCPEQTLVQRLLGRFPQLSRLEGQRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++VVALT+A L F ER+ K+Y+A V G P EG PL Sbjct: 134 HRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSG-LPPLEGQCREPLGRHPT 192 Query: 121 NRPKQKVCYET--GKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILG 177 + K V E G+ A TE+ + D + + ++ TGR+HQ+RVHM LG+P+LG Sbjct: 193 AKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQIRVHMTHLGYPLLG 252 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 DR YA + MAPR +LHA L THPA G M F P Sbjct: 253 DRLYAPKAVQNMAPRQMLHAWRLGFTHPASGEDMRFTCPPP 293 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 272 bits (696), Expect = 7e-72, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 111/228 (48%), Gaps = 20/228 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 + L +LY D + V++KP GL P + +++ R+ +P + VH Sbjct: 87 EAGSLRVLYADKELAVLDKPPGLTVHPAPGLP-EGTLVNRLLHHFPGLREMAGERPGIVH 145 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VALT+ L F R+ K Y+A V G P G + LP+ D Sbjct: 146 RLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRDPKY 205 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K V ++ G+PA + + V A D T + + + TGR+HQ+RVHM A+GHPI+GD Sbjct: 206 RTKMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMAAIGHPIIGDAV 265 Query: 181 YA----------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A R +LHA L+ THP +F P Sbjct: 266 YGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPP 313 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 271 bits (695), Expect = 9e-72, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 25/235 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRL 63 P+ L ILY+D+ ++V+NKP GL+ PG V + R P+A VHR+ Sbjct: 138 PENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRI 197 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP--AEGLVDLPLICDWPN 121 D TSG++V+A ++ L Q +++ + Y A V + +D P+ Sbjct: 198 DKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQ 257 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V +GKPA T E + +D + V ++ TGR+HQ+RVH+ LG P+LGD Y Sbjct: 258 RTKMAVV-SSGKPAVTHLEKITAISDAVSLVSVRLETGRTHQIRVHLSNLGFPLLGDPLY 316 Query: 182 ASPEARAMA---------------PRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + A+ R LHA L HP G + +A P D Sbjct: 317 GAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPEDM 371 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 13/224 (5%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------Q 56 Y PQ L +L++D+HI+V+NK +GL P + +++ + P + Sbjct: 98 YLKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDG-TLVNGLLHHCPDLPGISGKLR 156 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG IVVA ++ A +L+ Q ++R ++Y A V G P G + + Sbjct: 157 PGIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVG 216 Query: 117 CDWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K V E+G+ A+T + ++E D + + K TGR+HQ+RVH + HP+ Sbjct: 217 RHPVDRKKYAVVSDESGRYARTHWTLIERFGD-YSLLRFKLDTGRTHQIRVHCAHINHPV 275 Query: 176 LGDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y+ + P LHA L + HP G M F+AP Sbjct: 276 VGDPTYSRCRKLPLDLPGQALHAVQLGLDHPITGERMVFEAPLP 319 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 31/240 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSV--MTRIQRDYPQ-------AES 59 P++ L I+Y+DD ++V+NKP+GL+ PG V + R+ P+ Sbjct: 105 PEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMDPSLGL 164 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG++VVA A+ +L +QF + + Y A VWG G + + D Sbjct: 165 VHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIGRDL 224 Query: 120 PNRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R + V GKPA T Y+V+E A + + + TGR+HQ+R HM +GH + Sbjct: 225 KDRLQMAVFPPDGDIGKPAVTHYQVLEELA-YVSWIECRLETGRTHQIRAHMKHIGHTLF 283 Query: 177 GDRFYASPE----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 D Y + A+ PR LHA+ L HP G M F + PAD Sbjct: 284 ADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDSDIPAD 343 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 20/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ+ L ILY+D+H+ V+NKP+GL+ PG V + RD P+A VHRL Sbjct: 85 PQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRL 144 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+VVA T A+ L Q R+ +QY+A V G V+ + +R Sbjct: 145 DKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSG-GTVNAAIERHPRDRL 203 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + +V +TGK A T Y + E +TA + TGR+HQ+RVHM L HPI+GDR Y Sbjct: 204 RMEV-SDTGKEAVTHYRLRERFRAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRLYGG 261 Query: 184 P------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHAE+L HP + AP Sbjct: 262 SLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVP 308 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 270 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 22/231 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 ++ L +LY D ++V+NKP+GL P + +++ R+ +P + VH Sbjct: 89 EDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDG-TLVNRLLHHFPDMRAMAGDRPGIVH 147 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VA T++A L F ER K Y+A V G P ++G+++LP+ D + Sbjct: 148 RLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRDPKH 207 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 K V + G+ A++ +++ A D T + + + TGR+HQ+RVHM A+GHPI+GD Sbjct: 208 PTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVHMAAMGHPIVGDAV 267 Query: 181 YASPEAR----------AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + +A R +LHA L +HP G ++F PADF Sbjct: 268 YGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQPPPADF 318 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 23/237 (9%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAE 58 EN + L ++Y+DD ++V+NKP+GL+ P + + R P+A Sbjct: 106 ENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAG 165 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++VVA T A+ +L RQ + R K+ Y+A VWG +P G +D P+ D Sbjct: 166 IVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE-TPEAGTIDAPIGRD 224 Query: 119 WPNRPKQKVC-YETGKPAQTEYE---VVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 +R + + +GKPA+T ++ VV+ + V + TGR+HQ+RVH + GHP Sbjct: 225 PRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHP 284 Query: 175 ILGDRFY------ASPEA-----RAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 +LGD Y P+ A R LHA L + HPA G S+ + A P D Sbjct: 285 LLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHAGVPDD 341 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 12/220 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q L ILY+D+ ++++NKP+GL+ PG V + + VH Sbjct: 94 QNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVH 153 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G +VVA T+ A L+ Q +E+ ++ Y V+G P +G V+LP+ + Sbjct: 154 RLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGD 213 Query: 122 RPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K + + G+ A T + ++E ++ + + + TGR+HQ+RVH +GHP++GD Sbjct: 214 RQKMGIVPVEKGGREAVTHWRLLERIGNH-SWLEFQLETGRTHQIRVHSKQMGHPLVGDN 272 Query: 180 FYASPEA-RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y SP + P LHA L++ HP G +T AP Sbjct: 273 LYTSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMP 312 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 269 bits (690), Expect = 4e-71, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 29/238 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAE 58 P++ L I+++D I++++KP G++ PG ++D+++ + + Sbjct: 76 PKKMDLNIIFEDQDIIIIDKPIGMVVHPGAG-NYEDTMVNGLLYHCKNNLSGMNGEDRPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++VVA A + +QF E K+ Y+ V+G P G ++ + + Sbjct: 135 IVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHGKIETLIGRN 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHP 174 NR K GK A T YE +E N + V TGR+HQ+RVHM G+P Sbjct: 195 KTNRQKMSADVIRGKDAITNYETLEVFKGNKIPDISLVKCILETGRTHQIRVHMSHKGNP 254 Query: 175 ILGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTF--KAPAD 218 ILGD+ Y E R LHA L HP + F + P D Sbjct: 255 ILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFFASELPDD 312 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 24/231 (10%) Query: 9 PQEPWLVIL----------YQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--- 55 P+E L ++ Y+DD ++VV+KP G++ PG V + R P Sbjct: 74 PEEEPLELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGLLARGTPLCT 133 Query: 56 -----QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL 110 + VHR+D TSG++V A + A R L FR + +++YVA G EG Sbjct: 134 LAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAHGRMPHREGT 193 Query: 111 VDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA 170 +D+P+ D +R + V + GK A T +EV+E A + + L+ TGR+HQ+RVH+ A Sbjct: 194 IDMPIARDPADRQRMAV-RQGGKRAVTHFEVLESFA-KYSYLRLRLETGRTHQIRVHLAA 251 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +GHPI GD Y P LHA L THP G + F++ P+D Sbjct: 252 IGHPIAGDPVYG-PRHTLPIDGQALHARTLGFTHP-DGRRLRFESAVPSDM 300 >UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX2_THICR Length = 241 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 97/201 (48%), Positives = 137/201 (68%), Gaps = 1/201 (0%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 +LY+DD I+VVNKP+GLLSVPG+ + + +++ ++Q+ P A VHRLDM TSG++++A Sbjct: 29 VLYEDDDIIVVNKPAGLLSVPGKDLDPEMNLLAQVQKHVPTALIVHRLDMDTSGIMILAK 88 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPA 135 KA+ R L QF++R +K Y A +G PS ++G ++LP+ CDW NRP Q + + GK A Sbjct: 89 HKASHRHLSIQFQDRLTEKTYQAICFGKPSTSQGHLNLPMRCDWENRPLQIIDLKQGKAA 148 Query: 136 QTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 T ++ + DN V L P+TGRSHQLR+HM LGHPILGD YA P++ A + RLLL Sbjct: 149 STHWK-LTAQYDNAFEVNLTPVTGRSHQLRLHMKMLGHPILGDNLYADPQSFAASKRLLL 207 Query: 196 HAEMLTITHPAYGNSMTFKAP 216 HA L +THP +M F+ P Sbjct: 208 HAASLKVTHPVTKKTMLFEHP 228 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 24/231 (10%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----------DYPQAESVH 61 L ++++D H+ V++K +GL + P E V + R D + VH Sbjct: 98 ELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHRWPDVASDISGMDRQRPGIVH 157 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++VVALT+ L F R +K Y+A V G P+ G +D P+ Sbjct: 158 RLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQPAGTIDAPMGRHPSQ 217 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 + + V G+ A ++Y V+ + V ++ TGR+HQ+RVHM +GHP+LGD Sbjct: 218 KTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVRIHTGRTHQIRVHMAHIGHPLLGDSA 277 Query: 181 YASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 Y E +APR +LHA L+ HPA +T + PADF Sbjct: 278 YGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATCERVTLWRRPPADF 328 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 269 bits (688), Expect = 6e-71, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 25/233 (10%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD---------YPQAESVH 61 L I+Y+DD ++V+NK +G+ PG H D+++ + + VH Sbjct: 76 NIALDIIYEDDDLIVINKAAGMTVHPGAGH-HDDTLVNALLYHTKNLSDIGSAARPGIVH 134 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G++VVA A L Q +R+ ++Y A VWG +P G++ + Sbjct: 135 RLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLAGVIKNNIGRSRVE 194 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K + GK A T Y+ +E T + V + TGR+HQ+RV + + H ++GD+ Sbjct: 195 RQKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLNTGRTHQIRVQLSHVKHSVVGDQT 254 Query: 181 YASPEARAM------------APRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + + R LH+ L+ THP M F P D Sbjct: 255 YGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSCELPRDM 307 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 269 bits (688), Expect = 6e-71, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 14/221 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-----------QAE 58 + L L++D I+VVNKP+G++ PG +++ + +P + Sbjct: 77 ESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSG-TLLNALLHHFPSLTDTHCDPPLRGG 135 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG IVVA +K A L+++FR R +K+Y+A G + +G + LP+ Sbjct: 136 IVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATGIITETQGRITLPIGRH 195 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R + V E +PA+T + V+ A +T + + TGR+HQ+RVH ALGHP+ GD Sbjct: 196 PIHRKRMAVNTERARPAETLWRVLGQMAGHT-LLDVGLKTGRTHQIRVHFRALGHPLAGD 254 Query: 179 RFYA-SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R Y + A APR +LHA L HP G + F AP Sbjct: 255 RVYGFRGKQSARAPRQMLHAGTLGFRHPWSGKRVEFTAPLP 295 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 269 bits (688), Expect = 7e-71, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 13/224 (5%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------Q 56 Y P+ L +L++D+H++V+NKP+GL P + +++ + P + Sbjct: 80 YLQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDG-TLVNGLLHHCPDLPGISGKLR 138 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD T+G IV+A ++ A +L+ Q ++R ++Y+A V G P+ G + + Sbjct: 139 PGIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIG 198 Query: 117 CDWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K V + G+ A T + + E D + + K TGR+HQ+RVH HP+ Sbjct: 199 RHPVDRKKYAVVSSDNGRYACTHWSLQERLGD-YSLLRFKLDTGRTHQIRVHCAHRNHPV 257 Query: 176 LGDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y+ + P LHA L + HP G M F+AP Sbjct: 258 VGDPTYSRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLP 301 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 268 bits (687), Expect = 8e-71, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 13/221 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ L I Y+DD + +V KP G++ P V + + + V Sbjct: 76 PENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG+++VA A R L Q + ++YVA V G G VD P+ + Sbjct: 136 HRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAPIGRNKN 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R V + GK A T + V+E+ + + + TGR+HQ+RVHM +G+P++GD Sbjct: 196 DRQSMDVV-DDGKEAVTHFNVLEHF-NKYTLIECQLETGRTHQIRVHMKYIGYPLVGDPK 253 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + LHA ++ HP + P DF Sbjct: 254 YGPKKTLDIG-GQALHAGIIGFEHPVTHEYIEKSTALPEDF 293 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 115/232 (49%), Gaps = 25/232 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAES 59 P+ L +L++D ++VVNKP GL+ P E +++ R+ +P + Sbjct: 77 PEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHE-GGTLVNRLLHHFPAIGTVGEPDRPGI 135 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG +VVA T AA + L F+ R+ +K Y+A V+G G+V LP+ Sbjct: 136 VHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVTLPIGRHS 195 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V +PA+T ++V + D + + L+ TGR+HQ+RVH AL P++GD Sbjct: 196 LERKKMSVSSPQARPAETRWKVRKAFVD-ASLLELEIHTGRTHQIRVHCTALQRPVVGDP 254 Query: 180 FY--------------ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 Y AS E A R +LHA L HP G M F AP Sbjct: 255 TYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAPL 306 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 114/235 (48%), Gaps = 20/235 (8%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-----RDYP 55 + E PQ+ L I+Y+D+ I+V+NKP L+ PG + + D P Sbjct: 71 IEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHRLD T+G++VVA T A+ L + RE ++Y A GH + A G VD P+ Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 R V + GKPA T Y ++E+ +T R+ L+ TGR+HQ+RVHM + HP+ Sbjct: 190 SRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHT-RLRLRLETGRTHQIRVHMAHITHPL 247 Query: 176 LGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y R LHA ML + HP G M + AP Sbjct: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 11/213 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ ++Y+D++I V++KP L+ G V + + D + VH Sbjct: 71 EKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSDLDPLRPGIVH 130 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++++A A L QF+ + KK Y+A V G +P G++ P+ + + Sbjct: 131 RLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGK-TPESGIIAEPIGRNPND 189 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V Y+ K A T+Y+ ++ + + + + +TGR+HQ+RVHM +G+P+LGD Y Sbjct: 190 RKKMAVVYKNSKQAITKYKKLKEFQE-YSLLNINLLTGRTHQIRVHMAYIGYPVLGDIIY 248 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 + + +LH+ L HP M F Sbjct: 249 GRKNSLK-IDKQMLHSYKLIFNHPITNQKMEFT 280 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 100/228 (43%), Gaps = 22/228 (9%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESVHRL 63 L ILY+D H++VV+K +G+ P + V + + VHRL Sbjct: 102 PLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHRL 161 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+V A + AA R L F + + YVA G P+P G + + +R Sbjct: 162 DKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNPPTGTIQTQIGRSPGDRK 221 Query: 124 KQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHPILGDR 179 K V G+ A T Y V ARV + TGR+HQ+RVHM + G P LGD Sbjct: 222 KMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTHQIRVHMASKGSPCLGDP 281 Query: 180 FYASPE---------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + A R LHA +L HP G ++ F+ P Sbjct: 282 VYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGETLRFETPLP 329 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 113/227 (49%), Gaps = 20/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ+ L I+Y+DD I+V+NK ++ P V + D P+A VHRL Sbjct: 76 PQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVHRL 135 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+VVA T AA + L R+ +++Y V GH A G VD P+ +R Sbjct: 136 DKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVV-AGGTVDAPIGRHPRDRQ 194 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 +Q V TGK A T Y V+++ + T + ++ TGR+HQ+RVHM + HP++GD Y Sbjct: 195 RQAV-TATGKRAVTHYRVLQHYGEQT-WLRVQLETGRTHQIRVHMAHIRHPVIGDPVYGG 252 Query: 184 P------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA LT+ HP G M F+AP Sbjct: 253 RPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMP 299 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 13/222 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 PQE L I+Y+D H++VVNKP G++ P V + + Sbjct: 75 PQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKGSLSGIGGEIRPGI 134 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG++VVA A L +Q ++ Y V+G + EG V+ L Sbjct: 135 VHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGRSK 194 Query: 120 PNRPKQKV---CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V K A T Y+V+E + + + TGR+HQ+RVHM ++ HP+ Sbjct: 195 TDRKKMAVYPASEPHTKYAYTGYKVLERLGE-FTMLECRLKTGRTHQIRVHMASIHHPVA 253 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y LHA+ L HP G + F + Sbjct: 254 GDPVYGPHNCITSLHGQCLHAKTLGFIHPITGEHLRFDSELP 295 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 11/217 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHR 62 P+ L IL++D+H++++NKP+G+ + P + ++ I Y + VHR Sbjct: 78 PEYGELDILFEDNHMLIINKPAGIATHPNEDGQTG-TLANLIAYHYQINGETCKVRHVHR 136 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG IV A + A L +Q ++ K+ Y A G +G ++ P+ D + Sbjct: 137 LDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHP 196 Query: 123 PKQKVCYETGKPAQTEYEVVEYAA-DNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 +++V G+ A T ++V+ A + + V L+ TGR+HQ+RVH+ +LGHP+ GD Y Sbjct: 197 TRRRV-SPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLY 255 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA + HP + +AP Sbjct: 256 GGGS--KLLNRQALHANKVQAVHPITDELIVAEAPFP 290 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 39/250 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------------D 53 P+ L ++++DDH++VVNKP G++ P V + D Sbjct: 98 PENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMID 157 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 P+ VHR+D TSG++V+A AA+ L+ QF R +++Y+A V G P+ G +D Sbjct: 158 VPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDA 217 Query: 114 PLICDWPNRPKQKVCY-ETGKPAQTEYEVVEY-AADNTARVVLKPITGRSHQLRVHMLAL 171 P+ D +R K + TG+ A + + V N + V + TGR+HQ+RVH + Sbjct: 218 PIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHAREM 277 Query: 172 GHPILGDRFY--------------------ASPEARAMAPRLLLHAEMLTITHPAYGNSM 211 GHPI+GD Y A+ E A R +LHA L HP G + Sbjct: 278 GHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTGEEI 337 Query: 212 TF--KAPADF 219 +F + P DF Sbjct: 338 SFAVEPPPDF 347 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 111/221 (50%), Gaps = 14/221 (6%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAE 58 PQ+ ++YQD ++VV+KP+GL+ P +++ + YP + Sbjct: 90 EPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRG-TLVHGLLYRYPDLMELNGVKRPG 148 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++VVA A L R F++R K Y+A G EG V LP+ D Sbjct: 149 IVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLR-GEGSVSLPIGRD 207 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR + C G+ A T Y V+ ++ + V + TGR+HQ+RVHM +LGHP++GD Sbjct: 208 PDNRKRMA-CVPWGREALTRYRVI-WSRGGYSLVACQIKTGRTHQIRVHMRSLGHPLVGD 265 Query: 179 RFYASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R Y P R+ LH+ L HP G M+F P Sbjct: 266 RIYGGPCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLP 306 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD---------YPQAES 59 P L I+Y+DD I+VVNKP GL+ P ++ +++ + + Sbjct: 78 PVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLNGELRPGI 137 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D T+G++VVA T A L ++R ++YVA V VD P+ D Sbjct: 138 VHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSATVDAPIGRDP 197 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR + V + K A T + + E D + + K TGR+HQ+RVH + HPI+GD+ Sbjct: 198 KNRQRMAVTDQNSKQAVTHFYLAERFND-FSVLRCKLDTGRTHQIRVHAQYIKHPIVGDQ 256 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S + LHA+ LT+THP MTF+A Sbjct: 257 TY-SYKNTWETNGQCLHAQKLTLTHPVSKEVMTFEAELP 294 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 14/220 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVH 61 P++ L I+Y+D+ I+VVNKP G++ P + H + ++ Y V+ Sbjct: 78 PEKMDLDIIYEDNDIIVVNKPKGIVVHPTK--RHLNGTLSNGVLYYFNDKNENSIVRLVN 135 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLDM TSG++++A + L R ++ + K+Y+A V G+ + G++D P+ Sbjct: 136 RLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKPIYRVGEG 195 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 K+ + E G+ + T ++V+E N + V L TGR+HQ+RVH+ ++GHPI GD Y Sbjct: 196 TLKR-IIDERGQRSITLFKVIEQYK-NASLVELTLETGRTHQIRVHLSSIGHPIYGDSLY 253 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 E R LHA L I HP G + ++ P D Sbjct: 254 G-EEEPQYIDRQALHAYKLQIPHPKDGKILKLESSLPEDM 292 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 16/224 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHR 62 PQ+ L I+++DD+++VVNKP+G++ P + + +++ I + + VHR Sbjct: 84 PQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGH-YTNTLANGIVHHWQVRGERVRFRPVHR 142 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++V+A ++L Q + K Y A V+G PSPA+G V P+ + + Sbjct: 143 LDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGTVGAPIDRNPED- 201 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 P ++ G P+ T Y+ ++V LK TGR+HQ+RVHM +G P++GD Y Sbjct: 202 PHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRVHMKHIGCPLIGDGMY 261 Query: 182 A-----SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 E A R LHAE L +THP + A P D Sbjct: 262 GLQTGKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAALPPD 305 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 14/220 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAESV 60 Q+ ++Y+DD ++VVNKP+G++ PG +++ + YP + V Sbjct: 112 QDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDG-TLVNGLMFRYPEIGRIGDSVRPGIV 170 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD+ TSG++VVA + AA R L F+ E K+Y+ G EG VD P+ D Sbjct: 171 HRLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVDAPIGRDPR 230 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NR K V ++ G+ A T+Y+V+ A + ++ TGR+HQ+RVHM ALG + GD Sbjct: 231 NRLKMCVSWD-GRDAVTDYKVLWTRA-RCNLIRVRLHTGRTHQIRVHMRALGCSLDGDTL 288 Query: 181 YA--SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y P + R+ LH+ L HP G + F+AP Sbjct: 289 YGPKDPAQHILKDRVFLHSWRLGFRHPVSGERLEFRAPLP 328 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 40/250 (16%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P+ L ++++D ++V++KP G++ P + V + + Sbjct: 85 PEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHCGASLSGIGGEKRPGI 144 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAE----------- 108 VHR+D TSG++VVA T A + L QF +++Y+A V G P P++ Sbjct: 145 VHRIDKDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVPEPSDPRLRGIRGVSF 204 Query: 109 -----GLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN--TARVVLKPITGRS 161 + + +R +Q V +E G+ A T ++E A V + TGR+ Sbjct: 205 EPGGVLRIATGIARHRTDRQRQAVTFEGGRHAVTRARLLERFGTPPAAALVECRLETGRT 264 Query: 162 HQLRVHMLALGHPILGDRFYASPE-------------ARAMAPRLLLHAEMLTITHPAYG 208 HQ+RVHM +GH ++GD+ Y A PR LHA L HP G Sbjct: 265 HQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQALHAATLGFCHPVTG 324 Query: 209 NSMTFKAPAD 218 ++F++P Sbjct: 325 EDLSFESPLP 334 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 108/265 (40%), Gaps = 54/265 (20%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P++ L +L++D+H++++NKP+GL+ P V + + Sbjct: 93 PEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVARPGI 152 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSGV+V A T+ A L F+ ++ Y+A G P P G ++ + Sbjct: 153 VHRLDKDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRPLLGKIETRIARST 212 Query: 120 PNRPKQKVCYE-------------------TGKPAQTEYEVVEYAAD--------NTARV 152 +R K V E GK A T Y+V+E Sbjct: 213 TDRKKMAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGRIDATSGLPAATLT 272 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYA----------------SPEARAMAPRLLLH 196 + TGR+HQ+RVHM +G P+LGD+ Y + A R LH Sbjct: 273 ECRLETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETATHACKEFKRQALH 332 Query: 197 AEMLTITHPAYGNSMTFKA--PADF 219 A +L HP G ++ F+ P D Sbjct: 333 AAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGE0_9GAMM Length = 221 Score = 265 bits (680), Expect = 6e-70, Method: Composition-based stats. Identities = 106/203 (52%), Positives = 136/203 (66%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATS 68 P + IL+ DD +++VNKP+GLLSVPGR +KD ++TR+QR Y A VHRLDM TS Sbjct: 10 PCTEDVEILFTDDDLLLVNKPAGLLSVPGRHPANKDCLITRVQRQYADARIVHRLDMDTS 69 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+AL+ + R L + F ER+ K+Y A V+G L+DLPL+CDWPNRP+QKV Sbjct: 70 GIMVLALSADSHRALSQLFAERKIIKEYEANVYGTIIDDHRLIDLPLLCDWPNRPRQKVD 129 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 + GK AQT E V D RV+LKP+TGRSHQLRVH+ +GHPILG FYA A + Sbjct: 130 FHHGKNAQTWVERVSQHPDGWTRVLLKPVTGRSHQLRVHLAEIGHPILGCEFYAHQRAVS 189 Query: 189 MAPRLLLHAEMLTITHPAYGNSM 211 MA RL LHA L HP G ++ Sbjct: 190 MADRLQLHATKLEFCHPNSGETI 212 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 11/217 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ L ILY+D ++ ++KP+G++ G V + R + VH Sbjct: 73 EDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATLSGVGGPLRPGIVH 132 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGV++VA AA ++L QF RE +K Y+A V G P G ++ P+ D + Sbjct: 133 RLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPETGRIERPIARDPVH 192 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R + G+ A +EY V+ D + ++ TGR+HQ+RVH+ ++ HP++GD Y Sbjct: 193 RARMTARLAEGRAAWSEYRVLRRFPD-FTLLEVRIGTGRTHQIRVHLASIRHPVVGDTLY 251 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +P A+ + R LHA + P G M ++P Sbjct: 252 GAP-AQPLLGRYFLHAHRIRFHLP-SGREMLIESPLP 286 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 110/237 (46%), Gaps = 29/237 (12%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QA 57 P++ L I+Y+DD I+V+NKP L+ PG K ++ + + + Sbjct: 72 EPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGV-SKGTLAAALLYHFKENLSTVNGPLRP 130 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD T G++VVA AA R L Q R + Y A VWG P EG +D P+ Sbjct: 131 GIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRDLEGTIDAPIGR 190 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + NR K V + GK ++T Y V + + L+ +GR+HQ+RVH GHP++G Sbjct: 191 NPKNRLKMAVV-KGGKESRTHY-VAKQFFAIATLLELQLESGRTHQIRVHSRYTGHPVVG 248 Query: 178 DRFYASPEAR----------------AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + +AP LL A + + HP +TFK P + Sbjct: 249 DPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLTFKVPME 305 >UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XN95_SYNP2 Length = 538 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 12/219 (5%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63 ++ E L I+Y+D ++ ++KP+GL S+PGR + DS +R++RDY VHRL Sbjct: 329 QDILTIPEIPLEIIYEDHSLIAIHKPAGLPSIPGRSSQTYDSAFSRLRRDYQDIFLVHRL 388 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG+++ A +++L+ QFR R+ K+Y A + EG++ LPL D +RP Sbjct: 389 DQDTSGILLFAKNAETQQDLQTQFRRRKIHKEYEALLEEKIQRPEGMITLPLWADPGDRP 448 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRF 180 +QKV + GKP++T + ++ R+ LKPITGR+HQLRVH L +PILGDR Sbjct: 449 RQKVDAQRGKPSETYFVKLDSH-----RLKLKPITGRTHQLRVHCAHPNGLNNPILGDRL 503 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + APRL L A LT HP N T ++ +F Sbjct: 504 YGNR----AAPRLHLQATALTFMHPETKNPHTIQSAPEF 538 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 31/238 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRL 63 + L ILY+D+ I+V+NK +G++ PG K +++ I+ + + VHR+ Sbjct: 83 ENIPLNILYEDEDILVINKAAGMVVHPG-FGNEKGTLIHGIKYHFKNNHQLYRLGLVHRI 141 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G++V+A + A++ L +QF + +++Y+A VWG+ EG + + D NR Sbjct: 142 DKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQKQEGTISGFIGRDPNNRK 201 Query: 124 KQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 + + + + T Y+V+E V TG++HQ+RVH LGHP+ D Sbjct: 202 RMTLFQRNFYRSRYSVTHYKVLERFK-YLTYVSCNLETGKTHQIRVHFKYLGHPLFNDST 260 Query: 181 YASPE-----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + + R LHA L+ HP F P DF Sbjct: 261 YGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHPK-NRKCHFTCSIPEDF 317 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P + L + + D+ ++VVNK + P +++ R+ +P + V Sbjct: 77 PDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEP-TLVHRVAHHFPALLSQSGERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+IV+AL+++A L + F RE K+Y+A V G P + G V L L Sbjct: 136 HRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPD-SSGTVSLALGRHPS 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + + V G+ A+T +E++ AAD + V ++ +TGR+HQ+RVHM ALGHP+LGD Sbjct: 195 IKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAALGHPLLGDA 254 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 YA + A APR +LHA L HP SM F AP Sbjct: 255 VYADKQTAARAPRQMLHAWQLRFEHPRSFESMEFCAPPP 293 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 22/227 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRL 63 Q L ILY DD I+V+NKP+GL+ P + H ++++ + +P ++ VHRL Sbjct: 82 QNLPLNILYADDDIIVINKPAGLVVHPA-VGNHDNTLLNALLYHFPQTKHLPRSGIVHRL 140 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG +V+A + A +L RQ + R + Y+A V+G+ + + +DLP+ +R Sbjct: 141 DKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGD-TIDLPIGRHAKDRL 199 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 K V GKPA T Y + E + ++ TGR+HQ+RVH+ HP++GD+ Y + Sbjct: 200 KMAV-RPDGKPAITHYRIEERW-QTLTLLRVQLETGRTHQIRVHLSHHRHPLVGDKLYGA 257 Query: 184 ------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +A A PR LHA L + HPA M F AP Sbjct: 258 RPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLP 304 >UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDP7_9BACT Length = 556 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 121/220 (55%), Gaps = 22/220 (10%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGVIVV 73 LY+D + V+ KP GLLSVPG+ SV ++R Y +A VHRLDMATSG++++ Sbjct: 342 LYEDRELAVIYKPEGLLSVPGKDAAQP-SVYALMRRKYQEATGPLIVHRLDMATSGLMII 400 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPA-----------EGLVDLPLICDWPNR 122 A T+ A L+++F +K+YVA V G + G + LPLI D+ +R Sbjct: 401 AKTEFAYHRLQKEFLNHRVQKKYVAIVCGKDKESCNRILKEAEGGRGYISLPLIADFLDR 460 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDR 179 P+Q V E GK A TEYEV+E D R+ L P TGR+HQLRVH L PI+GD Sbjct: 461 PRQMVNREQGKEAITEYEVLERIDDTHLRLALYPKTGRTHQLRVHCAHQEGLNAPIIGDP 520 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A RL LHAE +T HP G MT ADF Sbjct: 521 LYG----NEPATRLHLHAEEITFEHPMTGKKMTVTRKADF 556 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 24/235 (10%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM-------TRIQRDYP 55 E P++ L I+Y+DD++M++NKP ++ P V Q + P Sbjct: 80 EETKITPEDIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTFYCQNLSQINGP 139 Query: 56 -QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 +A VHRLD TSGV++V + A + QF +R KK+Y A V G + +++P Sbjct: 140 LKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEINMP 199 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + +R K V +TGK A + YEV+E V + P TGR+HQ+RVHM A+GHP Sbjct: 200 IGRHRVDRQKMAVRRDTGKNATSVYEVIERFR-GYTLVKIMPKTGRTHQIRVHMQAIGHP 258 Query: 175 ILGDRFYAS---------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 ++ D Y+ P+ ++ R LHA + HP M F+ Sbjct: 259 VVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQ 313 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 264 bits (676), Expect = 1e-69, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 115/239 (48%), Gaps = 30/239 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------PQAES 59 P++ L ILY D+++ V+NK + ++ PGR ++ ++ +Q + +A Sbjct: 86 PEDIPLDILYDDEYLCVINKTANMIVHPGRG-NYRGTLAGALQFHFDSLSDVAGQYRAGI 144 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSGV+VVA + L RQF ER +K+Y A VWG V+ + + Sbjct: 145 VHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDADYVETYVRVSF 204 Query: 120 PNRPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 NR + VC + + A T YEV + V L+P TGR+HQLRVHM LGHPI+ Sbjct: 205 RNRERMMVCPPGDNARQAATFYEVQQRFR-GFTYVKLQPQTGRTHQLRVHMHHLGHPIIA 263 Query: 178 DRFYASPE---------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 DR Y + R LHA L HP M F+A PADF Sbjct: 264 DRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEAPLPADF 322 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 22/232 (9%) Query: 3 MENYNPPQE---------PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD 53 +E Y PP+ L I Y+DDH++V+NKP G+ ++P R EH + Sbjct: 85 VEVYVPPEPKNESLRPECIPLDIHYEDDHLLVINKPQGMPTIPSR--EHPSRTLANAVMG 142 Query: 54 YPQAES-------VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 106 Y ++ V+RLD TSG++VVA A +L + R + K+ Y+A G P Sbjct: 143 YYESHHIPFTFHAVNRLDRDTSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQP 202 Query: 107 AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRV 166 EG + P+ + ++ V + G+ A T Y+V+ + V + TGR+HQ+RV Sbjct: 203 REGTIHAPIKRRPSSIIERMVAAD-GQEAITHYKVI-NDNQAYSEVEINLETGRTHQIRV 260 Query: 167 HMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 H LGHP+LGD Y + + R LH + + + HP G + F AP Sbjct: 261 HFAHLGHPLLGDDLYGG--SIELLARQALHCQRVELIHPFTGKHLHFSAPLP 310 >UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU65_TERTT Length = 208 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 100/208 (48%), Positives = 126/208 (60%), Gaps = 3/208 (1%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 L I+YQDDHI+ +NKP+GLL+VPG D+ ++ +P + VHRLDMATSG+++ Sbjct: 3 DLAIIYQDDHIIAINKPAGLLTVPG--LATPDNAFDQLVHQHPNSRVVHRLDMATSGLVI 60 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 + + R F +R+ K Y A V G + G + LPLICDWPNRPKQKV E G Sbjct: 61 FPQSHESLVRFGRLFEQRKMTKTYTATVAGIVAEDRGEITLPLICDWPNRPKQKVDLEQG 120 Query: 133 KPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAP 191 K A T+Y+V+E D T R+ L PITGRSHQLRVHM LGHPILGD FYA + + Sbjct: 121 KHAHTQYKVLERRLDLQTTRIELTPITGRSHQLRVHMQQLGHPILGDAFYAPDAIQQASD 180 Query: 192 RLLLHAEMLTITHPAYGNSMTFKAPADF 219 RLLLHA L HP + DF Sbjct: 181 RLLLHATTLEFVHPFTQCPTSIHCEPDF 208 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 14/225 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI--------QRDYP 55 E+ P+ L ILY+D+H++V+NKP+G++ P V + D Sbjct: 77 ESNLMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLLPDTI 136 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG++V A T +++L F R+ K Y+A G P A+G + P+ Sbjct: 137 RPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGRP--ADGEIQAPI 194 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R + V TGKPA + + + ++ D + V ++ TGR+HQ+RVHM G PI Sbjct: 195 GRHPIHRKQMAVI-PTGKPAISFCKTLGWS-DKLSFVQIEIATGRTHQIRVHMKYRGSPI 252 Query: 176 LGDRFYASPEARAM--APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y P LLHA +L HP ++ F P Sbjct: 253 LGDPLYGQISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTPPP 297 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 10/216 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVP---GRLEEHKDSVMTRIQRD--YPQAESVHRL 63 P L I+++DDH++VVNK + + P G+ ++V Q + Y + +HRL Sbjct: 91 PTYVPLHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQCEGIYSKVRHIHRL 150 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGVI+ A A L + +R ++ Y+A V G+ +G ++ P+ D + Sbjct: 151 DRDTSGVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGTIEAPIGRDRHHPT 210 Query: 124 KQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 +++V +TG A T YE ++Y + + V L TGR+HQ+RVHM +GHP++GD Y Sbjct: 211 RRRV-SKTGDTAITHYERLQYDKQKHVSLVRLTLDTGRTHQIRVHMSYIGHPLVGDTLYG 269 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA L+ HP +T A D Sbjct: 270 G---KPWIDRQALHAFSLSFLHPFTEELITCSALPD 302 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 263 bits (673), Expect = 3e-69, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 15/221 (6%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAESV 60 + L +L++D H++ VNK +G++ PG + +D+++ + + V Sbjct: 77 DIPLTVLFEDKHMLAVNKAAGMVVHPG-VATSEDTLVHALLAHCAGSLSGIGGVERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T+GVIVVA T AA R L QF R KK+YVA V G P G +D + Sbjct: 136 HRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSIDRAIARHPV 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R + V E G+PA+T++E+VE D A V + TGR+HQ+RVH+ +LGHPILGD Sbjct: 196 HRHRMTV-GEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLKSLGHPILGDAL 254 Query: 181 YASPEARAMAP---RLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A R++LHAE L +THP G + +AP Sbjct: 255 YGWKPEPRLATQPARVMLHAEHLVLTHPISGKELDLRAPLP 295 >UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1W0M0_9BACT Length = 566 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 95/218 (43%), Positives = 126/218 (57%), Gaps = 16/218 (7%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---QAESVHRLDMA 66 Q L ++Y+DD ++VV+KP+G+LSVPGR + SV + ++ P + SVHRLDMA Sbjct: 347 QHSQLHVVYEDDALIVVDKPAGILSVPGRSQR--PSVYSILRSQMPSSVELFSVHRLDMA 404 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++++A R L+RQFR +K+Y+A + G S EG+V LPL D +RP+Q Sbjct: 405 TSGLLILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQV 464 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYAS 183 V +E GK A T Y V+ T V L P TGR+HQLR+H L PILGD Y Sbjct: 465 VDWEHGKKAVTSYRVLNVRHGKT-WVALFPETGRTHQLRMHCAHAEGLNCPILGDPLYGH 523 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 A RL LHA +T HP G +T A PADF Sbjct: 524 -----HANRLYLHATSITFEHPISGQLLTLHAQPPADF 556 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 12/220 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ L ILY+D+ ++++NKP+GL+ P V + + VH Sbjct: 95 EDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGIVH 154 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G I +A T A + L+ Q + + +++Y+ V+G P G+++LP+ + Sbjct: 155 RLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHPQD 214 Query: 122 RPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K + + G+ A T +++ E + N + + TGR+HQ+RVH +GHPI+GD Sbjct: 215 RKKMAIVPTEQGGRTAITHWQIRERLS-NYTLIHFQLETGRTHQIRVHSAKIGHPIVGDS 273 Query: 180 FYASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + + LHA L + HP G+ + A Sbjct: 274 VYGAGRSVGVNLAGHALHAWQLKLQHPISGDWIQVTASPP 313 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 262 bits (672), Expect = 4e-69, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 20/231 (8%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEH---KDSVMTRIQRDYP------QAE 58 P + L ++Y+D ++V++K + PG EH ++++ R + Sbjct: 76 PNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRPG 135 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++V A T+ A L + + KK+Y+A WG P P G++ + Sbjct: 136 IVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNIRVK 195 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + + GKPA+TEYEV + + + + TGR+HQ+RVHM +GH I+GD Sbjct: 196 RSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVHMSHIGHSIVGD 255 Query: 179 RFYAS----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA-PAD 218 + Y P R LHA +L HP+ G + F + PAD Sbjct: 256 QKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPAD 306 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 19/225 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ + IL++D+ I VV KP+G++ P V + +A V Sbjct: 80 PENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNISEYGGKERAGIV 139 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T+G++++A ++ A +EL++QF+ER K+Y+A V G G +DLP+ Sbjct: 140 HRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDHGFIDLPIGRSIY 199 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR K + A TEY V + +N V +K TGR+HQ+RVH A+GHP+ D+ Sbjct: 200 NRKKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGRTHQIRVHFSAIGHPLFNDK 259 Query: 180 FYASPEARAMAPRL----------LLHAEMLTITHPAYGNSMTFK 214 Y +++ + ++ L A + HP G + Sbjct: 260 VYGFKKSQLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEKIDIT 304 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 105/250 (42%), Gaps = 40/250 (16%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P++ L ++++D ++VV+KP G++ P V + + Sbjct: 94 PEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHCGDTLSGVGGAKRPGI 153 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA-------EGL-- 110 VHR+D TSG++VVA T A L QF + Y+A V G P+ A G+ Sbjct: 154 VHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAPNAADPRLRGIRGVSF 213 Query: 111 -------VDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN--TARVVLKPITGRS 161 + L +R +Q V +++G+ A T V+E A V TGR+ Sbjct: 214 EPGGIVCIATNLARHKTDRQRQAVLFDSGRHAVTRVRVLESYGTPPVAALVECWLETGRT 273 Query: 162 HQLRVHMLALGHPILGDRFYASP-------------EARAMAPRLLLHAEMLTITHPAYG 208 HQ+RVHM GH +LGD+ Y +A PR LHA L HP G Sbjct: 274 HQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQALHAASLGFVHPVSG 333 Query: 209 NSMTFKAPAD 218 + F +P Sbjct: 334 EELLFTSPLP 343 >UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=Q5E092_VIBF1 Length = 576 Score = 262 bits (670), Expect = 7e-69, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 125/218 (57%), Gaps = 14/218 (6%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLD 64 P L I+Y+DD +++VNKP LSV G+ DSV RIQ YP A VHRLD Sbjct: 367 PSYGKELEIVYEDDVLVIVNKPVEFLSVSGKY--ISDSVHARIQARYPNATGPLIVHRLD 424 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 M+TSG++V+ LT + +++++QF ER +K+Y A + G+ G ++LPL D +RP+ Sbjct: 425 MSTSGLLVLTLTAESNKQVQKQFIERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRPR 484 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFY 181 Q V +++G+ A+T Y+V+ T +V L P TGR+HQLRVH L PI+GD Y Sbjct: 485 QMVNHKSGRKAETHYQVIAQEGKRT-KVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLY 543 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHA L HP ++ F P DF Sbjct: 544 G-----FKADRLHLHAGYLKFKHPTTNETVEFSCPEDF 576 >UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMR7_9FLAO Length = 561 Score = 262 bits (670), Expect = 8e-69, Method: Composition-based stats. Identities = 98/215 (45%), Positives = 133/215 (61%), Gaps = 14/215 (6%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMAT 67 L I+Y+DD ++V+NKP LSVPG+ KDSV+TR+Q P A +HRLDM+T Sbjct: 355 NGELEIIYEDDFLVVLNKPHEFLSVPGK--TIKDSVLTRMQNYLPDATGPLLLHRLDMST 412 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG+++VA + + L++QF +R KK+YVA + G P+EG +DLPL D NRP+Q V Sbjct: 413 SGLLLVAKNERTHKNLQKQFIKRIVKKRYVALLNGKLEPSEGTIDLPLRVDLNNRPRQLV 472 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASP 184 C E GK A+T+YEV+E +N R+ PITGR+HQLRVH L PI+GD Y + Sbjct: 473 CDEHGKLAKTKYEVIE-IKNNKTRIHFYPITGRTHQLRVHAAHYKGLNMPIIGDDLYGTA 531 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + RL LHAEML+ HP ++F A F Sbjct: 532 -----SNRLHLHAEMLSFEHPVKREWVSFSCKAPF 561 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 262 bits (670), Expect = 8e-69, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 112/242 (46%), Gaps = 34/242 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L I+++DD I+V++KP GL+ P E V I + V Sbjct: 174 EAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIV 233 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD T+G++V A A + L QF + E ++ Y A VWG P+ G +D P+ Sbjct: 234 HRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPID 293 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-----TARVVLKPITGRSHQLRVHMLAL 171 R K V + G+ A T +EV+E + + + TGR+HQ+RVH+ + Sbjct: 294 RHPHAREKMAV-RDGGREAITHWEVLETFTGRSGGEIVSLIACQLETGRTHQIRVHLAHI 352 Query: 172 GHPILGDRFYA-------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--P 216 GHP+LGD Y + A R LHA +L + HP+ G + +++ P Sbjct: 353 GHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESGLP 412 Query: 217 AD 218 AD Sbjct: 413 AD 414 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 106/246 (43%), Gaps = 37/246 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ L ILY+DD ++V+NKP+G++ P R R + V Sbjct: 74 PENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPTRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGVIVVA A L Q+ +R +K+Y A +G + + Sbjct: 134 HRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIHASIGRHPY 193 Query: 121 NRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R KQ + + T K A T YEVVE RV ++P TGR+HQ+RVH+ +G PIL D Sbjct: 194 QRDKQAIREGHATSKTASTFYEVVERHG-RVTRVDVRPKTGRTHQIRVHLAHIGCPILCD 252 Query: 179 RFYAS--------------------------PEARAMAPRLLLHAEMLTITHPAYGNSMT 212 R Y + R LHA+ LT T+P G MT Sbjct: 253 RLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQTGKEMT 312 Query: 213 FKAPAD 218 AP Sbjct: 313 LTAPLP 318 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 28/236 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 PQ+ L ++Y+D+++ ++NK +G++ PG V + R ++ + Sbjct: 84 PQDIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNAILYRFGENLSSGKEFNRPGI 143 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG+I++A +L F RE KK Y A G P P +G ++ L Sbjct: 144 VHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAITTGIPEPEKGEIETYLARSN 203 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 N P+ G+ A T Y+ ++ A V + P TGR HQ+RVH + +PILGD Sbjct: 204 KN-PRTICVTNEGRYALTHYKTIKTW-HYFALVEINPATGRMHQIRVHFAHIRYPILGDL 261 Query: 180 FYASPEARA-----------------MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S R LH+ L HP G ++ AP Sbjct: 262 LYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFHPITGYPISVSAPIP 317 >UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=C7QW59_CYAP0 Length = 551 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---E 58 G+ N + + ++Y+D I+ ++KPSGLLSVPGR E DSV+TR+Q P A Sbjct: 332 GLGNNQSFFKSEIKVIYEDQWIIAIDKPSGLLSVPGRYFETFDSVLTRLQNSLPDAQELR 391 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 +VHRLD TSG++++A + R L +QF +R+ +K Y A + G EG++ LPL D Sbjct: 392 TVHRLDQDTSGILLLARDRYTHRHLSQQFAQRKVEKIYEAILAGSVMMNEGVIQLPLWGD 451 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM---LALGHPI 175 NRP QKV +E GKP+ T+++V+ +N R+ P+TGR+HQ+RVH LG I Sbjct: 452 PNNRPYQKVDWELGKPSITQFKVI-TTQENLTRIQFIPLTGRTHQIRVHAVDTQGLGSVI 510 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 LGD Y A RL LHA L HP ++ F Sbjct: 511 LGDYLYGC---NAGVSRLHLHARELKFEHPQQQKTVHLYLETPF 551 >UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q1CZL9_MYXXD Length = 559 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 91/212 (42%), Positives = 123/212 (58%), Gaps = 12/212 (5%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGV 70 L I+++D+ ++VV KP GLLSVP + +DSV+ R++ P+A HRLD+ TSG+ Sbjct: 354 LDIVFEDEWLVVVEKPEGLLSVPAKDVSVEDSVLARLRARAPEAAGTMLAHRLDLDTSGL 413 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V A L+RQF RE K+Y A V G+ G +D P+ D +RP+Q Sbjct: 414 LVAAKDARTYAALQRQFAGREVHKRYAAWVEGNVQGERGTIDFPMRVDLDDRPRQIHDPV 473 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEAR 187 GKPA TE+ V+E + T +V L P+TGR+HQLRVH LG PI+GDR Y P Sbjct: 474 HGKPAVTEWHVLERSHGRT-KVALFPLTGRTHQLRVHAAHPLGLGAPIVGDRLYGHP--- 529 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 PRL LHAE L+ HP G +T + PA F Sbjct: 530 --GPRLHLHAEALSFQHPVTGQRLTLERPAPF 559 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 19/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRL 63 P+ L ++++DD I+V+NKP L+ P + + D P+A VHRL Sbjct: 105 PEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPTLIDVPRAGIVHRL 164 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++VVA T AA+ +L RQ + R ++Y A V G PS G++D + D N Sbjct: 165 DADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQ-RGVIDAAIGRDPRNPL 223 Query: 124 KQKVC-YETGKPAQTEYEVV---EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + KV E KPA+T Y + + A + + + + TGR+HQ+RVH+ +GHP++GD Sbjct: 224 RFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQIRVHLEHVGHPLIGDP 283 Query: 180 FY-------ASPEARAM-APRLLLHAEMLTITHPAYGNSMT-FKAPA 217 Y P AR R LHA L + HP + F +PA Sbjct: 284 VYRRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFHSPA 330 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 11/217 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHR 62 P L I+Y+D+ ++V++KP+ + P + +++ + Y + R Sbjct: 80 PVPMKLDIVYEDEDLLVIDKPADMPVHPS-IHNFDNTLANGLAYYYESRGEAFVYRCITR 138 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD T+G+++VA + L + RE ++Y+A V G + AEG VD P+ + Sbjct: 139 LDRDTTGLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGK-TEAEGTVDAPIARVEGSV 197 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 ++ V ++ G+ A T Y +EY D + V LK TGR+HQ+RVHM +GHP+ GD Y Sbjct: 198 LERCVDFQRGERAVTHYRTLEY-RDGYSLVRLKLETGRTHQIRVHMKYIGHPLTGDFLYN 256 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + LH+ L HP G M F + + Sbjct: 257 PD--YRLMDHQALHSHYLAFRHPITGERMEFTSQPPW 291 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 12/214 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSV--PGRLEEHKDSVMTRIQRDY------PQAESV 60 P+ L ILY+D +++V+NKP+G+ P + + + +D+ +A + Sbjct: 104 PENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYKIKDFDFVGNKERAGII 163 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++++ ++ QF+ R KK Y A V G ++LP+ Sbjct: 164 HRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVLKDNYIEINLPIGRHHV 223 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K V E GK A T +V++ +T + + TGR+HQ+RVH G P+ GD+ Sbjct: 224 YRKKMTV-REDGKEALTHIKVLKRFNSHT-LIEINLKTGRTHQIRVHSSYKGFPVAGDKI 281 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 Y+ ++ L+L A+ + HP + F+ Sbjct: 282 YSKSFSKYSG--LMLVAKKIEFMHPITKELLDFE 313 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 25/233 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA------ESVHR 62 P+ I+Y+D+ +++VNK +GL+ P + ++ + + + VHR Sbjct: 80 PEPIPFDIVYEDEALLIVNKAAGLIVHPTHGH-YTGTLANGVVYYWQEKGEKFRFRPVHR 138 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG+I +A + + Q E K+Y A V G P+ EG +D P+ D P Sbjct: 139 LDQETSGLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPIDRD-PAE 197 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 P +++ +G P+ T Y+V E D ARV L+ TGR+HQ+RVHM ++GHP++GD+FY Sbjct: 198 PHRRIVTPSGYPSLTYYKVAEAYGDG-ARVELRLGTGRTHQIRVHMTSIGHPLIGDKFYG 256 Query: 183 SP--------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 P A R LHA L HP G ++TFK+ P D Sbjct: 257 MPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKSELPEDM 309 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLE-----EHKDSVMTRIQRDYP--------Q 56 ++ L I+Y+D ++VVNKP+G++ G V + R + Sbjct: 100 EDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQEKLSKTGGDLR 159 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG+I+VA AA + L F +RE K Y+A V GH + G ++ + Sbjct: 160 PGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIAEDRGTINAAIA 219 Query: 117 CDW-PNRPKQKVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALG 172 D E + A + Y V +E V ++ TGR+HQ+RVH+ ++G Sbjct: 220 RDVIRRTRMTTRRTEGARTAISHYRVQRRIETRWGKFTLVSVRIETGRTHQIRVHLSSIG 279 Query: 173 HPILGDRFYASPEARAM------------------APRLLLHAEMLTITHPAYGNSMTFK 214 HP++GD Y +P + PR LHA L HP + + Sbjct: 280 HPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKFPHPRSEKPLHLE 339 Query: 215 APAD 218 AP Sbjct: 340 APLP 343 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAE 58 PQ + ++Y+DD+++V++KP+G++ P H D + + + Sbjct: 77 PQNIPIQVIYKDDYLIVLSKPAGMVVYP--CAGHPDGTLMNALAYHVKKLANVGAPFRPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+VVAL +L F++RE KK+Y+A V+G G + P+ Sbjct: 135 IVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLR-GSGKITTPVGRA 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K + + K A TE+EV++ N + +K +TGR+HQ+RVH ++GHP++GD Sbjct: 194 IYDRKKMSIKSKKAKEAITEWEVIKNFK-NYTFLKVKILTGRTHQIRVHFSSIGHPVIGD 252 Query: 179 RFYASP------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y + R +LHA + + HP + F+A Sbjct: 253 KTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASLP 298 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 11/214 (5%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA------ESVHRLD 64 + L I Y+D+ +MV+ KP+GL+ P ++ + + + +V+RLD Sbjct: 78 DMPLSIRYEDEDLMVIAKPAGLVVHPT-GNHPSGTLANGMIAYWKKRGENRKFRAVNRLD 136 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + A + R + R ++ Y A V G +G ++ P+ + Sbjct: 137 KDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTINTPIGLAENSFIT 196 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V G+ A T Y V+ + + V +K TGR+HQ+RVHM + GHP+ GD Y Sbjct: 197 RQV-RPDGQTAVTHYRVLAR-GEGMSFVEVKLETGRTHQIRVHMSSEGHPLAGDDLYGG- 253 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LHA L+ HP G +M+++ P Sbjct: 254 -EREHIGRQALHAWGLSFVHPRSGLAMSWEEPLP 286 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 108/227 (47%), Gaps = 19/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------------DYPQ 56 P+ L +LY+D+H++ VNKP G+++ P V + R D + Sbjct: 92 PEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYR 151 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL-VDLPL 115 VHRLD TSGVIVVA T A L F++R K Y+A G + V+ P+ Sbjct: 152 PGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPV 211 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLAL 171 R + V + AQT + + D A V +P TGR+HQ+RVH+ L Sbjct: 212 GRHPTARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTHQIRVHLAHL 271 Query: 172 GHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 G PILGD Y A A+ PR LHA+ LT+ HP G ++ AP Sbjct: 272 GSPILGDAVYG--RASAVMPRHALHAQFLTLPHPVTGETLHLHAPVP 316 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 11/214 (5%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHRLD 64 + L I+Y+D+ I+V+NKP+ + P +++++ I + + ++RLD Sbjct: 78 KMDLNIIYEDEDILVINKPADMPVHPSAG-NYENTLANGIAWYFAEKGEDFVYRCINRLD 136 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 T+G +++A + L Q ++R+ + Y+A V G P G ++ P+ + Sbjct: 137 RDTTGALILAKNPLSAAILSVQMKKRQILRTYLALVDG-LLPDSGTINAPIARMEGSVIT 195 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V + TG+ A T YE + A + L TGR+HQ+RVHM +GHP+ GD Y Sbjct: 196 REVNFGTGESAITHYERLA-AGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGDYLYNPD 254 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LH+ L THP G M F AP Sbjct: 255 YRR--INRQPLHSYQLEFTHPTTGKVMLFTAPLP 286 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 10/216 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA------ESVHR 62 P L I+YQD ++V+NK G+ PG + D++ + Y + VHR Sbjct: 79 PAPGPLDIVYQDQDVLVLNKAPGVAVHPGPGH-YSDTIGNFLMDYYRKQGILADFHPVHR 137 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG+++VAL A+ LK Q ++ Y+A G P+P G++D P+ + Sbjct: 138 LDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPIGRLEGSV 197 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + V G+ A T Y + D A V L+ TGR+HQ+RVHM LGHP+ GD Y Sbjct: 198 LARTV-RPDGQRAVTHYRTLRTVNDR-ALVRLELETGRTHQIRVHMAHLGHPLTGDFLYG 255 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + E +++ PR LHA L+ THP G +M F AP Sbjct: 256 T-EDQSLIPRPALHAAELSFTHPITGKTMAFTAPLP 290 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 104/222 (46%), Gaps = 17/222 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ + I+Y+D+ I VV KP GL+ P V + + V Sbjct: 77 PENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T+GV+V+A A R L RQF+ER+ +K Y V G G +D P+ Sbjct: 137 HRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHPV 196 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R + V E GK A TEY V++ + +K TGR+HQ+RVH ++GHP+LGDR Sbjct: 197 DRKRFWVRKE-GKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGDR 255 Query: 180 FYASPEARAMAPRL-------LLHAEMLTITHPAYGNSMTFK 214 Y + L +L A L HP G M F+ Sbjct: 256 TYGFKSSSVPKELLSLMGECNMLIAYHLGFYHPTKGEWMVFE 297 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 14/221 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 ++ L ++Y+D+H++VV+K +G++ P V + R P +A VH Sbjct: 79 EQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRAGLVH 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++VVA + AA R L R+ ++Y A WGH + V+ P+ D + Sbjct: 139 RLDKDTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIARDPRD 198 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R + + ++GK ++T++ + D+ + TGR+HQ+RVH+ + GHP++GD Y Sbjct: 199 RTRMAIV-QSGKASRTDFTRLARF-DSVDLLRAHLHTGRTHQIRVHLASTGHPVVGDDTY 256 Query: 182 ASPEARAMA----PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R +A R LHA L HP G+ + ++P Sbjct: 257 GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLP 297 >UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aeruginosa RepID=B0JGC2_MICAN Length = 501 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L I+Y+D+ I+ +NKP+GLLSV GR ++ +D+V+ R +R VHRLD TSG++++ Sbjct: 300 LEIIYEDEGIIAINKPAGLLSVAGRYQDSQDAVVNRFRRQGKNLIPVHRLDRETSGILLL 359 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A + R L +QF+ RE +K Y A + G++DLPL + NRP Q V ++ GK Sbjct: 360 AKSLDIYRCLSQQFQRREVEKIYEAILSEIIERESGIIDLPLWGNPQNRPYQTVDWQRGK 419 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM-LALGHPILGDRFYASPEARAMAPR 192 +QT ++VV N +R+ P TGR+HQ+RVH LG ILGDR Y ++ R Sbjct: 420 ASQTYFKVVGKEG-NYSRLEFIPYTGRTHQIRVHSQQGLGIGILGDRLYNGKQS----DR 474 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA+ L+ HP N + P F Sbjct: 475 LHLHAKQLSFRHPQTENKLDLIIPTPF 501 >UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria RepID=Q26D11_9BACT Length = 561 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 126/220 (57%), Gaps = 14/220 (6%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHR 62 NP + + ++Y+DD I++VNKP LSVPG+ KDSV +R++ YP A VHR Sbjct: 350 INPGIDKTMEVIYEDDAIIIVNKPEEFLSVPGK--TIKDSVYSRLKELYPDATGPILVHR 407 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LDM+TSG++V ++ QF R K+YVA + G EG+++LPL D NR Sbjct: 408 LDMSTSGILVATKNLEYYHFIQEQFINRTISKRYVALLNGVLENNEGMIELPLRVDLDNR 467 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDR 179 P Q VCYE GK A+T+Y+V+E T V PITGR+HQLRVH L PI+GD Sbjct: 468 PTQLVCYEYGKSARTKYQVLERREKET-LVHFYPITGRTHQLRVHAAHASGLNAPIVGDD 526 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + RL LHAE + HP +++FKAP F Sbjct: 527 LYGTAT-----NRLHLHAEFIKFIHPITHKTVSFKAPVPF 561 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 22/231 (9%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAES 59 P++ L IL++D+H++V+NKP+G++ P +H V + + Sbjct: 82 EPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPGINGVERPGI 141 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG +V+A ++ + L F E +QY+A G PS ++LP+ Sbjct: 142 VHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKCIELPIGRHP 201 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V ++G+ + T+ V E+ +++ L TGR+HQ+RVHM P+LGD Sbjct: 202 HQRQKMAV-TDSGRESITDAAV-EHIFGPFSQMRLTLHTGRTHQIRVHMAHENLPVLGDP 259 Query: 180 FYA------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 YA + A A R LHAE+L HP G M+F+AP Sbjct: 260 VYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLP 310 >UniRef50_B7VRG6 Pseudouridine synthase n=4 Tax=Vibrionales RepID=B7VRG6_VIBSL Length = 563 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 127/219 (57%), Gaps = 14/219 (6%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRL 63 NP I+Y+DD I+VVNKP LSVPG+ E DSV TRI+ YP A +HRL Sbjct: 353 NPAVGKSFDIVYEDDEIVVVNKPEEFLSVPGKFIE--DSVYTRIKARYPDATGPLIIHRL 410 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 DM+TSG++++ALT + + +++QF +R +K+Y A + G G + LPL D +RP Sbjct: 411 DMSTSGLLILALTAESNKHIQKQFIDRTVEKRYTALLDGEIDGKSGDISLPLRGDITDRP 470 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRF 180 +Q VC+E G+ A+T +E V T +V L P TGR+HQLRVH LG PI GD Sbjct: 471 RQLVCHEHGRNAETHWEAVSTNNGKT-KVHLYPKTGRTHQLRVHCAHPSGLGVPIRGDDL 529 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y RL LHA L + HP G + F+ P++F Sbjct: 530 YGYKR-----ERLHLHAGYLKLIHPTTGEWIEFEVPSEF 563 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 113/263 (42%), Gaps = 53/263 (20%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 P+ L ++++ D ++VVNKP+G++ P V + Sbjct: 68 EPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDEV 127 Query: 53 -----------------DYP--QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPK 93 D+P + VHRLD TSG++VVA A + L QF+ Sbjct: 128 SEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTVD 187 Query: 94 KQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARV 152 ++Y A VWG +P++G ++ + D +R + V E GK A+T YE VE A +T+ V Sbjct: 188 RRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVETHA-HTSVV 246 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA----------------MAPRLLLH 196 + TGR+HQ+RVH A GHP+LGD Y R P LH Sbjct: 247 EFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPHPALH 306 Query: 197 AEMLTITHPAYGNSMTFKA-PAD 218 A L HP + F+A P Sbjct: 307 AYRLGFDHPTTEERLRFEADPPP 329 >UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1Z5_9PROT Length = 579 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMATSGV 70 + I+Y+DD ++VVNKP+GL+S PGR E ++S+ +R+ + YPQ VHRLDM TSG+ Sbjct: 374 IEIVYEDDQLLVVNKPAGLMSTPGR--EIEESLFSRLAQRYPQIPELTLVHRLDMDTSGL 431 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPS--PAEGLVDLPLICDWPNRPKQKVC 128 ++VA + L++QF ER +K Y A + P +G ++LPL D +RP+Q VC Sbjct: 432 LLVAKDLRTHKRLQKQFIERSVEKCYEAVLVKRLPAQPDQGRIELPLRVDLDDRPRQMVC 491 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPE 185 Y+ GKPA T ++++ + T R+ P TGR+HQLRVH L I+GD Y P Sbjct: 492 YQHGKPATTRWQIIARENNRT-RIWFYPETGRTHQLRVHASHRDGLNAAIVGDGLYGLP- 549 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL+LHA L THP M F+ PA F Sbjct: 550 ----AERLMLHARRLCFTHPVSREPMVFELPAPF 579 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 31/240 (12%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ---------RDY 54 E P L I+Y+DD ++++NKP+G++ PG + V + D Sbjct: 72 EASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDE 131 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHR+D TSG+IV+A L QF E + Y +WG P+ G +D Sbjct: 132 LRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTF 191 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD----NTARVVLKPITGRSHQLRVHMLA 170 + NR +V GK A T Y+ +E + + V + TGR+HQ+RVHM Sbjct: 192 ITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQIRVHMTH 251 Query: 171 LGHPILGDRFYASPEARAM---------------APRLLLHAEMLTITHPAYGNSMTFKA 215 +G+ I+GD + + R LHA+ L HP M F + Sbjct: 252 MGNSIMGD---GKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTS 308 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 26/240 (10%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------- 55 + P + ++Y+D I+++NK G+ PG + ++++ + Y Sbjct: 86 DTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNN-NTLVNALVAHYGNSLSHVGK 144 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + +HRLD TSG++V+A + + L +++ KK+Y+A VWG P+P + Sbjct: 145 ATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKN 204 Query: 114 PLICDWPNRPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + N+ V + GK A TEY+ + ++ + + + TGR+HQ+RVHM + Sbjct: 205 YICVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRTHQIRVHMSYI 264 Query: 172 GHPILGDRFYASPEARAM-----------APRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 G+ I+GD+ Y ++++ R LHA L THP + F + P D Sbjct: 265 GNSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNTYIEFHSYIPND 324 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI--------QRDYPQAESV 60 P++ L IL++D+H++ VNKP G++ P R + V Sbjct: 110 PEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTVGGQHRPGIV 169 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGVI+VA T L QF +R K+Y A G P +V P+ Sbjct: 170 HRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRDRDVVSQPIGIHPF 229 Query: 121 NRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K + + T + A+T + V+E A + A V P TGR+HQ+RVH+ + P+L D Sbjct: 230 HREKMAIRPGHSTSRDAETMFHVLERFAQHAA-VECLPKTGRTHQIRVHLAHVRTPVLCD 288 Query: 179 RFYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y + R LHA L+I HP G +T +AP Sbjct: 289 KLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIEAPLP 340 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 259 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 13/211 (6%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAESVHRLDMAT 67 ILY+DDH+++VNKP GLL P H + + + + VHRLD T Sbjct: 87 EILYEDDHLLIVNKPVGLLLHPTERYHHVT--LDHLVSGHFFRTGLEAKVRHVHRLDQDT 144 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SGV++ A A L RER K+ YVA V G G ++ P+ D + +++V Sbjct: 145 SGVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRRRV 204 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 G PA T Y+V E +V + TGR+HQ+RVH +GHP+LGD Y R Sbjct: 205 -TPNGDPAITHYQVKERF-QTATKVECQLETGRTHQIRVHFSHIGHPLLGDELYGGK--R 260 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA +L HP G + AP Sbjct: 261 ELIKRQALHAAVLKFEHPFGGEVIEVTAPLP 291 >UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VZC6_MARMS Length = 212 Score = 259 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 97/207 (46%), Positives = 127/207 (61%), Gaps = 4/207 (1%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L ILY+D+ V+NKP+ LSVPGR + DS++ R + + +A ++HRLD ATSG+I+V Sbjct: 9 LEILYEDEWFAVINKPANCLSVPGRGPDKLDSILYRAECLFGEAFAIHRLDEATSGLILV 68 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC-YETG 132 A T ++ + FRERE +K+Y A + GH +G V PL CDWPNRP+Q +C E Sbjct: 69 AKTHECQKRMYAHFREREVQKEYRALLRGHLLGEKGEVRKPLRCDWPNRPRQIICTDEWS 128 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 K + T +E + Y +NT RV L P TGRSHQLRVHM +LGH I+GD FY PR Sbjct: 129 KDSITYWEKMAY-ENNTTRVRLVPFTGRSHQLRVHMQSLGHSIIGDEFYDPEFQND--PR 185 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 LLLHA L HP + F A F Sbjct: 186 LLLHAYRLEFRHPFTKAWIAFVAACPF 212 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 9/214 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-----AESVHRLD 64 + L I+Y+DD+++V+NKP + ++P R H + Q V RLD Sbjct: 76 EPIPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHYEQQQLQTTVHVVTRLD 135 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + L Q ++ K++Y A G+ G +D P+ + + Sbjct: 136 RDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLVGTIDAPIGRKGDSIIE 195 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V + G+ A T YEV++ + T V ++ TGR+HQ+RVH +GHP++GD Y Sbjct: 196 REVRLD-GQRAVTHYEVLQQKNEMT-HVSIQLETGRTHQIRVHFSHIGHPLVGDDLYGG- 252 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LH+ LT HP + +MTF AP Sbjct: 253 -LREHIDRQALHSCELTFFHPFFEKTMTFHAPLP 285 >UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE05_GEMAT Length = 476 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 10/217 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDM 65 P EP ++Y+DDH++VVNKPSG+L+VPGR +D VMTR++ YP A VHRLD+ Sbjct: 264 PNEPA--VVYEDDHLLVVNKPSGMLTVPGRGPTMQDCVMTRLRARYPDATGQMVVHRLDL 321 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++ A L+R F RE K YVA + G + G + LPL D +RP+ Sbjct: 322 DTSGLLLAAKDPITASALQRLFSLREIDKHYVAWLDGVVTDDHGHIHLPLRMDVDDRPRN 381 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYA 182 GKPA TE++V+ D RV P TGR+HQLRVH L PI+GDR Y Sbjct: 382 IHDPVFGKPAHTEWQVMAR-TDGRTRVRFTPHTGRTHQLRVHAAHPDGLDAPIVGDRLYG 440 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L HP G + + PA F Sbjct: 441 -RTAPDEDERLQLHAERLAFVHPVSGAKVVVEQPAPF 476 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 11/218 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAESVH 61 P + + I+Y D V+NKP+G+ P D+++ + ++ + VH Sbjct: 76 PVKMDIEIIYDCDEFAVINKPAGITVHPAPGHAD-DTIVNAMLAEFDITDDNDLRPGIVH 134 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VA + + L + F +R+ K+Y+A WG P E ++ P+ + + Sbjct: 135 RLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKELEFTIEQPIGRHYKD 194 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R + V E G+ +++ V++ +N ++ TGR+HQ+RVHM G P+ GD Y Sbjct: 195 RKRMCV-REDGRYSKSGVRVLKQN-NNAFLAEIRIFTGRTHQIRVHMSHAGFPLAGDVVY 252 Query: 182 ASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++ + R LH+ L P G M F++P Sbjct: 253 GHRQSLKLPIKRQALHSFRLAFVSPFTGEDMVFESPLP 290 >UniRef50_A5ZGG0 Pseudouridine synthase n=4 Tax=Bacteroides RepID=A5ZGG0_9BACE Length = 590 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 132/247 (53%), Gaps = 41/247 (16%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRL 63 N ++ L I+++D+ ++VVNKPSG+LSVPG+ EE DSV R++ YP A VHRL Sbjct: 351 NTHKDTELEIVFEDEWLVVVNKPSGMLSVPGK-EEDMDSVYHRLKEKYPDATGPMIVHRL 409 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAE--------------- 108 DMATSG+++VA TK + L+ QF R KK+Y+A + G + E Sbjct: 410 DMATSGLLLVAKTKEVHQHLQAQFENRSIKKRYIALLDGCITETEETTNQTTGNTRKTEK 469 Query: 109 -------------GLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLK 155 G ++LPL + +RP Q V E GK A TEY+++ ++ R+ Sbjct: 470 VRATEVISTTGKVGRIELPLCPNPLDRPCQSVDEEHGKEAITEYQII-TNSEKHTRIAFC 528 Query: 156 PITGRSHQLRVHMLA---LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMT 212 P+TGR+HQLRVH L PILGD Y A RL LHAE + HP YG+ + Sbjct: 529 PLTGRTHQLRVHAAHPKGLNCPILGDELYGKK-----ADRLYLHAEYIEFRHPIYGDIIC 583 Query: 213 FKAPADF 219 + DF Sbjct: 584 IQKEPDF 590 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 11/203 (5%) Query: 25 VVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DYPQAESVHRLDMATSGVIVVALTK 77 VVNKP G++ P V + + VHR+D TSG+++VA Sbjct: 90 VVNKPQGMVVHPAAGHSSGTLVNALLHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKND 149 Query: 78 AAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQT 137 A R L Q + + ++ Y A V G + G ++ P+ +R KQ V E G+ A T Sbjct: 150 KAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVI-EGGREAVT 208 Query: 138 EYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE--ARAMAPRLLL 195 + V++ + + TGR+HQ+RVHM +GHP++GD Y + + LL Sbjct: 209 HFRVLKRYV-GYTLLKVSLETGRTHQIRVHMSYIGHPVVGDPVYGTAQKLDGTQLNGQLL 267 Query: 196 HAEMLTITHPAYGNSMTFKAPAD 218 HA+ LT+ P G+ ++F +P Sbjct: 268 HAKTLTLEQPTTGDELSFDSPLP 290 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRLD 64 Q+ + ++Y+D+ I++VNKP L++ PG + D +A VHRLD Sbjct: 76 QDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDRAGIVHRLD 135 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++VVA ++ A++ L RQ + ++Y A V+GH G VD P+ D +R + Sbjct: 136 KNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISG-GTVDKPIGRDPKDRIR 194 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS- 183 Q V E+GK A T Y V+E A +T V + TGR+HQ+RVH+ +GHP++ D Y Sbjct: 195 QTV-TESGKDALTHYRVIERFAHHT-HVKVMLETGRTHQIRVHLSFIGHPLIADPMYGGK 252 Query: 184 -----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA+ LT+ HP M++K P Sbjct: 253 IRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLP 298 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 257 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 105/230 (45%), Gaps = 22/230 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRLD 64 + L I+Y+DD I+V+NKP L+ PG + + + P+ VHRLD Sbjct: 80 ENISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLPRGGIVHRLD 139 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 T+G++VVA + ++ L Q + + ++Y A VWG + ++ P+ R K Sbjct: 140 KDTTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNK-VIQKPIGRHPRQRTK 198 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 V GK A+T+ E++E +T V TGR+HQ+RVHML PI+GD+ Y Sbjct: 199 MAVTKVNGKDAETKLEILERFNYHT-YVRCLLKTGRTHQIRVHMLDNNSPIVGDKDYGLK 257 Query: 185 -------------EARAMAPRLLLHAEMLTITHPAYGNSM--TFKAPADF 219 ++ R LHA L + HP M T P D Sbjct: 258 KIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDM 307 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 10/222 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---- 57 G ++ P + L I+Y+DD +++VNKP+GLL P + + + Sbjct: 63 GDDSCLTPMKMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGA 122 Query: 58 -ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 +HRLD TSG++ +A + L + K+ Y+A V G PS G +D P+ Sbjct: 123 FHPIHRLDRNTSGLVAIAKHPHIQHALSG-GGAKGLKRLYLAVVTGIPSSLMGRIDAPIG 181 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 PN ++V G+PA T Y V+ + + V L+ +TGR+HQ+RVH+ +GHP+L Sbjct: 182 RH-PNSIIKRVVRSDGQPAITLYRVLSTFSM-ASLVELELLTGRTHQIRVHLSHIGHPLL 239 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y A + R LHA L+ HPA +T +P Sbjct: 240 GDDLYGG--ATDLIRRQALHAASLSFRHPATDKVLTLTSPLP 279 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 12/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVHR 62 P++ L ++Y+D I+V+NKP G++ P + ++ ++ + + + V+R Sbjct: 78 PEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQNG-TLSNGVLYYFKEKNENSIVRLVNR 136 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LDM TSG++++A + L R ++ + K Y+A V G+ G+++ P+ Sbjct: 137 LDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSGVINKPIYRVGEG- 195 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 ++V E G+ + T ++VVE D V L TGR+HQ+RVH+ ++GHPI GD Y Sbjct: 196 TLRRVIDERGQRSVTRFKVVESYED-ADLVELTLETGRTHQIRVHLSSIGHPIYGDSLYG 254 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 E R LHA L I HP G + ++ P D Sbjct: 255 -KEEHEYIDRQALHAYKLQIPHPKDGRILKLESDLPDDM 292 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 24/239 (10%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-------RDYPQ 56 E+ P+ L IL++DD ++V+NK G++ PG E V + R P+ Sbjct: 77 EDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRGAPR 136 Query: 57 -AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHRLD TSG ++VA ++ A EL RQF+ E K+Y+A V+G + A G + + Sbjct: 137 RPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGASGEIRTGM 196 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R + V + G+ A ++++V A + + + TGR+HQ+RVH+ + HP+ Sbjct: 197 GRHPVDRKRMAVLEKGGREAVSQWKV-AVAWGEVSLLRVVIKTGRTHQIRVHLSHMQHPV 255 Query: 176 LGDRFYASPEARAMA-------------PRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +GD Y + +A A R +LHA L HP G ++F A P DF Sbjct: 256 VGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTAPLPPDF 314 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 257 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QA 57 P L I Y+DD ++++NKPS L+ P + D+++ + + + Sbjct: 78 EPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGH-YNDTLVNGLLYHFKNNLSNENGLLRP 136 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHR+D TSG++++A L + E ++ Y+A V G ++LP+ Sbjct: 137 GIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIAR 196 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHP 174 + +R K ++ GK A T ++++ + + V + TGR+HQ+RVH+ + HP Sbjct: 197 NTVDR-KMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIRVHLSYIKHP 255 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + GD Y LHA L HP + AP Sbjct: 256 VYGDPTYGKSVDEFN---QRLHAYKLKFIHPLTKKEICVYAPVP 296 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 257 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 114/239 (47%), Gaps = 22/239 (9%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM--------TRIQRD 53 P L I+Y D ++V+NKP+GL P + V R+ D Sbjct: 71 EENEDLEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTD 130 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD T+G++V AL + A+ +L QF R K Y+A V G EG++++ Sbjct: 131 RQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINV 190 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALG 172 PL D +R + E G+ A+T Y+V++ + V ++ TGR+HQ+RVH L Sbjct: 191 PLARDQQSRARVAPSRE-GRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIRVHFSHLN 249 Query: 173 HPILGDRFYASPEAR----------AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 HP+LGDR Y + +A R LLH+ L I HP + F + P DF Sbjct: 250 HPVLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSRQWLEFISRPPRDF 308 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 257 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 13/222 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--------PQ 56 N PQ L I+Y+D ++ V+NKP+ L+ P L K +++ + + + Sbjct: 73 NLQTPQNLNLDIIYEDPYLAVINKPANLVVHPS-LSFQKTTLVNGLLHQFNTLSHIDTQR 131 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD T+G+++VA T +L+ F++R+ K Y A + G +G++ LP+ Sbjct: 132 PGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEG-FLEDKGIIKLPIG 190 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + NR K +V GK A T ++ ++ + + + + TGR+HQLR H L HPI+ Sbjct: 191 RNNHNRLKMQV-MPDGKTAVTHFKTLQRFS-HFSLMECNLETGRTHQLRAHFSFLKHPIV 248 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y S LH+++L HP ++ +AP Sbjct: 249 GDLLYDSSHHITPL-GQFLHSKILKFNHPITNQNLILEAPLP 289 >UniRef50_C5VJ38 Pseudouridine synthase n=2 Tax=Prevotella RepID=C5VJ38_9BACT Length = 571 Score = 257 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 92/217 (42%), Positives = 120/217 (55%), Gaps = 18/217 (8%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRL-EEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 L ILY+DD++ VV KPSGLLS+PG+ + S++ + A VHRLDMATSG++V Sbjct: 360 LQILYEDDYLAVVVKPSGLLSIPGKGCQASIYSILCERWKGKSDAFMVHRLDMATSGLLV 419 Query: 73 VALTKAAERELKRQFREREPKKQYVAR----VWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 VA T + L+ QF R KK+YVA + PAEG ++LPL D +RP+Q+V Sbjct: 420 VARTSEVHKALQAQFIGRTVKKKYVALLPLSILEKQLPAEGRIELPLSPDPDDRPRQRVD 479 Query: 129 YETGKPAQTEYEVVEYAADN-----TARVVLKPITGRSHQLRVHMLA---LGHPILGDRF 180 GKPA TEY ++ ++ L P+TGR+HQLRVH LG PI+GD Sbjct: 480 RTNGKPAITEYRLIGKTTYGKEALEAVKIALYPLTGRTHQLRVHCAHPDGLGTPIIGDNL 539 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 Y A RL LHA L THP M+F P Sbjct: 540 YGQR-----AERLWLHATHLEFTHPITQERMSFDTPL 571 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 14/223 (6%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES----- 59 N+ Q+ +Y+D +++VNK G+++ P + H D + Y +++ Sbjct: 77 NHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTK--SHPDWTIANGAALYLKSKGIDCKV 134 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V+RLDM TSG++++A A L Q +E +K+Y+A VWG EG ++ P+ Sbjct: 135 RFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIYR 194 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + K+ V E G+ + TE++V+E N V +K +TGR+HQ+RVHM LGHP++G Sbjct: 195 TTMDSIKR-VVDERGQESITEFKVLERYK-NATMVEVKLLTGRTHQIRVHMEHLGHPLIG 252 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 D Y +A + R LHAE L P + ++ KA PAD Sbjct: 253 DTLYGKEDAE-LIDRQALHAEYLRFWQPRFKRAIEVKADLPAD 294 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 8/221 (3%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMT-----RIQRDYPQA 57 + Y P L I+Y+D H++V+NKP+ +L P +E+ V R Q +Y Sbjct: 82 EKTYYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNLV 141 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 +HRLD T+G++++A + A + QF+ ++Y+A V G+ + ++ P+ Sbjct: 142 RPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGK 201 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + K+KV + GK A T +VV+ + + +K TGR+HQ+RVH+ LGHP+LG Sbjct: 202 TRDSLIKRKVDHTLGKRAVTHIKVVK-PGGLISLIRVKLETGRTHQIRVHLSHLGHPLLG 260 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + + R LH+ +T P +TFKAP Sbjct: 261 DTLYGGEDI--LIKRPALHSYKVTCCLPFKHKEVTFKAPLP 299 >UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria RepID=B1Y046_LEPCP Length = 256 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 111/218 (50%), Positives = 137/218 (62%), Gaps = 7/218 (3%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATS 68 P EP + IL+ DD ++VV KP+GLLSVPGR E +D V R+Q +P A VHRLDMATS Sbjct: 39 PSEPLIDILHHDDSLLVVRKPAGLLSVPGRGEHLQDCVAARVQAIWPDALIVHRLDMATS 98 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+A AA+R L F R KQYVA V G + G VDLPL DWPNRP+QKV Sbjct: 99 GLMVMARGPAAQRALGSAFEHRSVTKQYVAVVAGDVAGDAGSVDLPLCADWPNRPRQKVD 158 Query: 129 YETGKPAQTEYEVVEYAADNT-------ARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 G+P+ T + A + + R+ L+P+TGRSHQLRVH+LALGHPILGD Y Sbjct: 159 AAMGRPSLTHWRRATPAHEGSTTGDIDRTRLELEPVTGRSHQLRVHLLALGHPILGDTLY 218 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A + MAPRLLLHA + + HPA G F P F Sbjct: 219 APDAVQRMAPRLLLHASRIALPHPAGGGICVFSDPPAF 256 >UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae RepID=A9BWX6_DELAS Length = 245 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 LY+D ++V++KPSGLL VPGR + +D + R + +P A VHRLD ATSG++V+A + Sbjct: 35 LYEDAELLVLDKPSGLLCVPGRGPDKQDCLSGRALQRWPDALVVHRLDQATSGLVVMARS 94 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAE----GLVDLPLICDWPNRPKQKVCYETG 132 A++R L F +R K YVA V G P+ + +DLP+ DW RP + + G Sbjct: 95 LASQRLLSEAFAQRRVHKLYVAVVAGRPAAQQADAWQSIDLPIAADWERRPLRIIDALQG 154 Query: 133 KPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 KP+QT + + A + T RV L+P+TGR+HQLRVHM ALGH ILGD YA +A Sbjct: 155 KPSQTLWRAMPAATEGHDTPTTRVQLQPVTGRTHQLRVHMAALGHAILGDALYADAAVQA 214 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ++PRLLLHA L + HP G ++ F++ F Sbjct: 215 LSPRLLLHAHQLELAHPLSGQTLRFESAVPF 245 >UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PHX6_CHIPD Length = 570 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 13/212 (6%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--SVHRLDMATSGV 70 L I+YQD+ ++VVNKPSGL SVPG +DSV TR++ E VHRLDM TSG+ Sbjct: 367 ELDIIYQDESVVVVNKPSGLRSVPG--VTIQDSVYTRLKHALGDIEPLIVHRLDMDTSGL 424 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +VVA T+AA + ++RQF +R K+Y A + +EG +DLPL D NRP+Q VC+ Sbjct: 425 LVVAKTQAAHKHIQRQFLQRTVSKRYTALLSKVIDTSEGEIDLPLTADLFNRPRQIVCFT 484 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEAR 187 TGK + T ++VV T ++ P+TGR+HQLR+H L PI+GD Y + Sbjct: 485 TGKKSVTRWKVVTRYQAMT-KIDFWPLTGRTHQLRMHSAHPLGLNAPIVGDDLYGTA--- 540 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A R+ LHA + THP ++F AP F Sbjct: 541 --AERMYLHAAHIEFTHPLSRQRISFDAPVTF 570 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 10/217 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD--------YPQAESVH 61 +E L ILY+D+ I++VNK G++ P V + + + VH Sbjct: 87 EEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESLPGSSLLRPGIVH 146 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGV+V+A T+ + + L QF +R +K Y+ + + + Sbjct: 147 RLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPYLRYSFEANIHRHASD 206 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V GK A+T + ++ +A+ + + +P++GR+HQ+RVH+ LG PI+GD Y Sbjct: 207 RKKMAVHRLKGKTAETRFTLL-FASSQASFLKCEPVSGRTHQIRVHLSHLGFPIIGDPLY 265 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + P LLLHA L I HP G + F AP Sbjct: 266 GKGVRKYPFP-LLLHAYALKIEHPRSGKKIEFMAPLP 301 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 256 bits (655), Expect = 4e-67, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 120/270 (44%), Gaps = 57/270 (21%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------------- 52 P L I+++D+ ++VVNK +G+++ P E V + Sbjct: 63 KPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQA 122 Query: 53 --------------------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREP 92 + VHRLD TSGV+VVA +A L QF R Sbjct: 123 LSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARVV 182 Query: 93 KKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTAR 151 +++YVA + G PSP++G ++ P+ D +R + V G+ A + YEV+ A+ N + Sbjct: 183 RRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLANGNASL 242 Query: 152 VVLKPITGRSHQLRVHMLALGHPILGDRFYAS-----------------PEARAM---AP 191 V + TGR+HQ+RVH +GHPILGD Y EA+A+ Sbjct: 243 VEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMSTID 302 Query: 192 RLLLHAEMLTITHPAYGNSMTFK--APADF 219 R +LHA L THP G ++ F P DF Sbjct: 303 RPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 256 bits (655), Expect = 4e-67, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 9/223 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD-----SVMTRIQRDYPQ 56 E P+ L ++++DDH+++VNKP+ + + P + ++Q + Sbjct: 73 QEEYGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAFHLQMQGVETK 132 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 +HRLD T+G +V A A + R ER K+ Y+A V G +G++D + Sbjct: 133 VRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIIDEAIG 192 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPI 175 D + +++V + G A T Y++ +Y V L+ TGR+HQ+RVHM GHP+ Sbjct: 193 RDRHHATRRRV-SQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQIRVHMSHSGHPL 251 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y P LHA + HP +T +AP Sbjct: 252 IGDVLYGGQAT--YMPYQALHAMRIHFLHPITKEEITVEAPLP 292 >UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FCX9_ACIAD Length = 214 Score = 256 bits (655), Expect = 4e-67, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 124/206 (60%), Gaps = 4/206 (1%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 +++D+ MV++KP+G+LSVPG+ + DS++ R+ P+ +HRLD TSG++V L Sbjct: 10 IHRDNDFMVIHKPAGILSVPGKGDALFDSLLVRLVEIEPKTLLIHRLDRDTSGILVFGLN 69 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 K A+ + RQF+ER+ K Y A V G EGL+D+P++ D P KPAQ Sbjct: 70 KMAQSAISRQFQERQTDKIYQALVVGEVY-GEGLIDVPVVYDAARPPLHIADPAHHKPAQ 128 Query: 137 TEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193 TE++ +E N R+ L PITGRSHQLRVHM +GHPI+GD YAS + + RL Sbjct: 129 TEWQALEQFELNGKMVTRMRLTPITGRSHQLRVHMQYIGHPIVGDTLYASLADQQLVSRL 188 Query: 194 LLHAEMLTITHPAYGNSMTFKAPADF 219 LHAE L+ HP G +TF P F Sbjct: 189 CLHAEQLSFYHPKTGELVTFHCPVPF 214 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 256 bits (655), Expect = 4e-67, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 21/231 (9%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------- 55 +++ P+ + ++Y D ++VVNK +G+ PG E +++ + YP Sbjct: 80 LQSGIKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESG-TLVHHLAALYPELARFDG 138 Query: 56 -QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG++ VAL ++A L R F RE K+Y+ V G P AEG VD P Sbjct: 139 ERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRP-EAEGTVDHP 197 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGH 173 L D ++ + V GK A T ++ V + D + + ++ +TGR+HQ+RVHM LG Sbjct: 198 LGRDPQSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMAYLGF 257 Query: 174 PILGDRFYAS------PEARAMAPRL----LLHAEMLTITHPAYGNSMTFK 214 P++GD Y +R + RL +LHA L HP G + + Sbjct: 258 PLVGDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGRMVCCE 308 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 255 bits (654), Expect = 5e-67, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVP---GRLEEHKDSVMTRIQRDYP-- 55 M E P+ L ++Y+DDH+++VNKP + + P G + + V Q Sbjct: 72 MEEEYDVEPEYGELHVVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVAFHFQMQGLET 131 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + +HRLD T+G +V A + A + R ER+ K+ Y A V G +G +D + Sbjct: 132 KVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAI 191 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHP 174 D + +++V G A T Y+V EY N V L+ TGR+HQ+RVHM G+P Sbjct: 192 GRDRHHATRRRV-SPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQIRVHMSYNGNP 250 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y R LHA + HP + P Sbjct: 251 LVGDVLYGGGT--KYMSRQALHAMKINFLHPITKEEIEVDVPFP 292 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 26/238 (10%) Query: 3 MENYNPPQ------EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP- 55 + NY PQ + I+YQD+ I+V+NKP L+ PG K +++ + ++ Sbjct: 65 LNNYQEPQLKVEAQKVDFEIVYQDNDIIVINKPKNLVVHPGNGNWDK-TLVNGLLHEFAT 123 Query: 56 ---------QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 106 + VHRLD TSG+++VA A + L +Q E +++Y+A V G Sbjct: 124 NLSDVNGEIRPGIVHRLDKDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPH 183 Query: 107 AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVE---YAADNTARVVLKPITGRSHQ 163 + ++LP+ D NR K+ V K A T E++ Y ++ + V TGR+HQ Sbjct: 184 TKMRINLPIGRDNQNRTKKVVSSFNSKNAITNVELINTFVYKNEHFSIVKCILETGRTHQ 243 Query: 164 LRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +RVH+ +G+PI GD Y + + R LHA +T H G M FK P +F Sbjct: 244 IRVHLSHIGYPIYGDPVYG-KKIDDLGQR--LHAYEITFKH-LDGRLMNFKTEMPDEF 297 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 10/223 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QA 57 E PQ+ +Y DD + VV K +G+ PG + V ++ P + Sbjct: 68 EESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGPLPGAGLRP 127 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD+ TSG++VVA T A L+R+F +R +K Y+A V G ++G +D P+ Sbjct: 128 GIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQGTLDGPIGR 187 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V G+ A T Y + + + + + TGR+HQ+RVHM ++G + G Sbjct: 188 SRYDRLKMAV-RADGRRAVTRYRTL-WTRGSLSLTACRIETGRTHQIRVHMASIGCYLDG 245 Query: 178 DRFYASPEA--RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 DR Y + + R+ LHA L+ HP+ G +M F++P Sbjct: 246 DRLYGPKDVSRHFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLP 288 >UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter RepID=B0VCN8_ACIBY Length = 212 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 6/206 (2%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 +Y+DD MV++KPS +LSVPG+ + H DSV+TR+ P+ +HRLD TSG++V L+ Sbjct: 10 IYRDDDFMVIHKPSDILSVPGKGDLH-DSVLTRLVAIEPRTLLIHRLDRDTSGILVFGLS 68 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 K + + RQF++R+ K Y A V GH EG VD+P++ D P V KPA Sbjct: 69 KRGQSAIARQFQDRQTSKIYEALVAGHL-EGEGTVDIPVVYDPSRPPLHIVDASHNKPAL 127 Query: 137 TEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193 T ++ +E+ RV L PITGRSHQLRVHM LGHPI+GD YA+PE + + PRL Sbjct: 128 THWQAIEHFQIQGQPVTRVKLTPITGRSHQLRVHMQYLGHPIVGDTLYAAPE-QLLVPRL 186 Query: 194 LLHAEMLTITHPAYGNSMTFKAPADF 219 LHA+ L+ HP G S+TF P F Sbjct: 187 CLHAKQLSFNHPVTGESLTFNCPVPF 212 >UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A6TAT3_KLEP7 Length = 263 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 10/222 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMAT 67 PP + +LYQD+H++++NKP+GLLS+ G+ + DSV R+ + YP VHRLD T Sbjct: 42 PPCREQITLLYQDEHLVLINKPAGLLSLSGKDPRNLDSVHHRLVQRYPGCTLVHRLDFGT 101 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++V+A K L +QF +R K Y A + GH + EG+V+ + D P+ + Sbjct: 102 SGLMVIARNKGINALLCQQFSQRTVDKVYTALLCGHLAEDEGIVEAAIAKDPARFPRMAL 161 Query: 128 CYETGKPAQTEYEVVEYAAD--------NTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 C GKPA++ Y V++ RV L P TGR+HQLR+H LG+PILG Sbjct: 162 CARHGKPARSRYRVIDRLYQAREGERALALTRVTLTPETGRTHQLRIHCQLLGYPILGCD 221 Query: 180 FYASPE--ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y E APRL+LHA L HP M + + F Sbjct: 222 LYGGRELPGTEQAPRLMLHASELRFVHPVSHEPMHIQQASPF 263 >UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PU24_9BACT Length = 421 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 97/216 (44%), Positives = 126/216 (58%), Gaps = 18/216 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMA 66 + L I+Y+DD + VV+KP+G+LSVPG+ ++SV+ ++R P A VHRLDMA Sbjct: 218 ETHELKIVYEDDTLCVVDKPAGMLSVPGKG--CRESVLDVMRRRCPDATGALVVHRLDMA 275 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++VVA T A REL+RQF R +K+YVA + P +G + LPL D +RP+Q Sbjct: 276 TSGLMVVAKTAEAYRELQRQFATRSVRKRYVAILSRQPREPKGEIALPLRPDLDDRPRQV 335 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYAS 183 V GKPA T YE+++ RV L P TGR+HQLRVH L PI GD Y Sbjct: 336 VDSVYGKPALTHYEIID-----GCRVALYPRTGRTHQLRVHCAHRDGLDSPIKGDELYGR 390 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L HPA G + F + A F Sbjct: 391 R-----AERLYLHAEWLAFRHPATGEEVEFTSVAPF 421 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 12/217 (5%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVH 61 P E L I+Y+DD ++VVNKP + + D+ +Q + A +VH Sbjct: 72 PTYEYDLEIIYEDDFLLVVNKPVDMKTH-ANDSYETDTCANAVQYYLEKTGQDANALAVH 130 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++ A K A L Q R + Y+A V G ++ P+ D + Sbjct: 131 RLDQTTSGLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQTINKPIGEDRHH 190 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 ++++ G+PA T +V+E + NT+ V + TGR+HQ+RVH+ +GHPI+GD Sbjct: 191 GSRRQI-SPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIGDTL 249 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 Y A R++LHAE L + HP G M F APA Sbjct: 250 YGGS---PRANRIMLHAEKLHLNHPFKGKEMNFSAPA 283 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 13/218 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVHRL 63 ++ L I+Y+DD ++++NK + + ++P R E SV + Y + V RL Sbjct: 78 EDIPLCIIYEDDAVLIINKEANMSTIPSR-EHPAGSVANALLSHYDKQHLASTVHIVTRL 136 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++++A + L +Q +++ K+ Y A V G EG++D P+ + Sbjct: 137 DRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKSDSII 196 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 ++ VC E G+ A T ++V++ T V L+ TGR+HQ+RVHM +GHP+LGD Y Sbjct: 197 ERTVC-EDGQRAVTHFKVIDSTYHKT-HVALELETGRTHQIRVHMAHVGHPLLGDSLYGG 254 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFK--APADF 219 R R LH++ LT HP M+F P+D Sbjct: 255 R--RDEMKRQALHSKSLTFYHPILEKEMSFTIKLPSDM 290 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 3/207 (1%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVI 71 L ILY+DD ++ V+KP GL ++P R + + VHRLD SGV+ Sbjct: 1 MELPILYEDDDLLAVHKPEGLAAIPERDPSRPSARRLLEAARGERLWVVHRLDKEASGVL 60 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 + A A R + F +R+ +K Y A V G P +G + P+ + V E Sbjct: 61 LFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPI--RMYGSGRMGVDPER 118 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAP 191 GKP++T Y V+EY + + + P+TGR HQ+RVH +GHPI+GD Y + P Sbjct: 119 GKPSETRYRVLEYLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDPRYGDRSVQQRYP 178 Query: 192 RLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL+LHA + HP G + AP Sbjct: 179 RLMLHALSIRFRHP-NGQELEIVAPVP 204 >UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VJ18_LACRD Length = 301 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 11/216 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA-------ESVHR 62 E + I+Y+D +++NKP+G+ +VP DS++ R++ Y + R Sbjct: 74 SEAPIDIIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKRQNYENQVTHVATR 133 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++V + A L Q ++ KK Y+A + G G +D P+ D + Sbjct: 134 LDRDTSGLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVPAEHGYIDAPIQRDPNSF 193 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K+ V E GK + TEY E + + ++ TGR+HQ+RVH +LG P++GD+ Y Sbjct: 194 VKRMVGKE-GKASVTEYWRQECNVQ-ASLIKIRLHTGRTHQIRVHFASLGFPLIGDKMYG 251 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 E + R LH L+ P G ++T AP Sbjct: 252 --EESGLIARQALHCYWLSFYSPFKGKNITVSAPLP 285 >UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elongatus RepID=Q31NG5_SYNE7 Length = 543 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 118/221 (53%), Gaps = 15/221 (6%) Query: 8 PP---QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVH 61 PP + L ILY+D ++ + KP+GLLSVPG + S + +++ +P VH Sbjct: 329 PPSSDEPLELPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCVVH 388 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD ATSG+++VA + + L QFR R+ K Y A + G P G +DLPL DW Sbjct: 389 RLDQATSGILLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTIDLPLRPDWTR 448 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGD 178 RP Q V + G+PA T Y ++ D R+ L+PITGR+HQLRVHM LG PILGD Sbjct: 449 RPYQLVDRDRGRPALTYYRCIDQTGDR-CRMELEPITGRTHQLRVHMAHPEGLGQPILGD 507 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + RL LHA + HP+ + + F Sbjct: 508 DLYG-----QSSDRLYLHARSIRFRHPSQLDWIQLTTDTPF 543 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 107/222 (48%), Gaps = 18/222 (8%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-----------QAESVH 61 ILY+DD ++V++KP+G++ P +V+ + YP + VH Sbjct: 82 EFPILYEDDVMLVIDKPAGVVVHPAAGNPTG-TVVNALLGRYPQLAEQLACTTSRPGIVH 140 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG + VA T A+ +L F RE +K Y+A G P G + + + Sbjct: 141 RLDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELSTLIGRHPVS 200 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAAD----NTARVVLKPITGRSHQLRVHMLALGHPILG 177 R K V GK A T Y V EY + ++ +TGR+HQ+RVH+ +LG P+LG Sbjct: 201 RQKMAVVERNGKLAITRYRV-EYTGMLDGVEIGVLAVRILTGRTHQIRVHLASLGVPVLG 259 Query: 178 DRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y A A R LLHA L + HPA G M F AP Sbjct: 260 DAVYGGARTAVAGVERQLLHAWKLCVPHPATGTPMEFTAPPP 301 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 22/234 (9%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAES 59 N P+ + I+Y+D ++VVNKP+GL+ PG + V + P+A Sbjct: 78 NLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNALLHHCPELQLLPRAGI 137 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 +HRLD T+G+++VA + L RQ + RE K+ Y+ V G+ G +D Sbjct: 138 IHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYVISG-GTIDTGFGRHP 196 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR K V + G+ A T Y + ++ D + + +TGR+HQ+RVHM + HP++GD+ Sbjct: 197 KNRLKMAV-TDFGRQAVTHYNINKHYKD-FTLLNVSLMTGRTHQIRVHMNYINHPVVGDQ 254 Query: 180 FYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y R LHA ++ HP +T A P DF Sbjct: 255 LYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEITLNALLPDDF 308 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 40/249 (16%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L IL++D H++++NK +G+ P + V + + V Sbjct: 77 EAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQGQLSGIGGVERPGIV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V A T++A L F + + Y A G P P G ++ + Sbjct: 137 HRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIARSES 196 Query: 121 NRPKQKV----CYETGKPAQTEYEVVEYAADN--------TARVVLKPITGRSHQLRVHM 168 +R K V + A T Y+ VE A + + TGR+HQ+RVHM Sbjct: 197 DRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAAALLECRLETGRTHQIRVHM 256 Query: 169 LALGHPILGDRFYA-----------SPEARA--------MAPRLLLHAEMLTITHPAYGN 209 G P++GD Y EAR R LHA +L HP G Sbjct: 257 AHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQALHAAVLGFVHPITGE 316 Query: 210 SMTFKAPAD 218 ++ ++AP Sbjct: 317 TLRYEAPLP 325 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 254 bits (650), Expect = 1e-66, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 8/211 (3%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVP----GRLEEHKDSVMTRIQRDYPQAESVHRLDMAT 67 P + ILY+DDH+++ NKP+G++ P H + + + + VHRLD T Sbjct: 92 PSIDILYEDDHLLIANKPAGMMVHPIKQETDTLVHALAAVLAARGEQTSVHPVHRLDKDT 151 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG I+VA + + R RE ++Y+A G S G +D P+ D + K++V Sbjct: 152 SGAILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGRDARHPTKRRV 211 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 E+G PA T YEV + ++ + TGR+HQ+RVH +GHP+ GD Y AR Sbjct: 212 V-ESGDPAITHYEV-QQTSEEMTLARVWLETGRTHQIRVHFAHIGHPLAGDTMYGG--AR 267 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA L+ HP + +AP Sbjct: 268 GLLRRQALHASKLSFLHPLLEKEIVVEAPIP 298 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAESVHRLDM 65 L I+Y+D+H +++NKP+G S+P + H +++ I+ Y Q V RLD Sbjct: 75 DLDIVYEDEHFLILNKPAGYASIPSAI--HSNTIANFIKAYYIKQDYPNKQVHIVTRLDR 132 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS-PAEGLVDLPLICDWPNRPK 124 TSG+++ A A L +Q ++R K+Y A V G P +G + P+ + Sbjct: 133 DTSGLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGR-TDDSII 191 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + GK A+T Y+V+ +N + V + TGR+HQ+RVH LG P+LGD Y Sbjct: 192 TRTVTPKGKYAKTSYKVIARYPENVSLVDITLHTGRTHQIRVHFAHLGFPLLGDDLYGGR 251 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNS 210 M R LH L+ THP + Sbjct: 252 LDLGMT-RQALHCHHLSFTHPFTESR 276 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 254 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 20/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ L ++Y+D+ ++V+NKP GL+ PG + + + D P+A +HRL Sbjct: 84 PQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRL 143 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++++A T A+ L + + R+ ++Y A V G ++ P+ +R Sbjct: 144 DKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGR-TIEAPVGRHPIHRT 202 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + V E G+PA T + +++ +T + ++ TGR+HQ+RVHM + HP+ GD Y S Sbjct: 203 RMAVV-EFGRPAITHFRIIKRYRAHT-HIRVQLETGRTHQIRVHMAHIHHPLAGDPVYGS 260 Query: 184 ------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 A R LH L +HP M AP Sbjct: 261 HVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAPLP 307 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 253 bits (648), Expect = 2e-66, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 24/231 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------QAESVH 61 PQ L I+Y+D+ I+V+NK S ++ PG + ++ +V+ + YP QA V Sbjct: 81 PQNIPLNIIYEDNDILVINKASNMVVHPG-IGHYQGTVLNALLYRYPSILKISKQAGIVQ 139 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G++++A T +A L R F+ R+ K+Y A V+G + G+V+ P+ + Sbjct: 140 RLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRRHFAK 199 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R V Y TGK A T Y VVE + +RV + TGR+HQ+RVHM + HP++GD+ Y Sbjct: 200 RTFMSVHY-TGKSAVTYYSVVEEFKAH-SRVRINLKTGRTHQIRVHMAYINHPLVGDQKY 257 Query: 182 ASPEARAMAP--------------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA L + HP M + AP Sbjct: 258 KGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPLP 308 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 11/215 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------PQAESVHRL 63 + L ILY+D+H++V+NK + S+P R S+ I Y V RL Sbjct: 62 EPVPLDILYEDEHVLVINKQPYVSSIPSREHPSG-SIANGIIDHYQTTGVRATVHLVTRL 120 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG+++VA + A L + K++Y A V G + EG VD P+ P+ Sbjct: 121 DRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRH-PDSI 179 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 ++ G+ A T + V A D+ V L+ TGR+HQ+RVHM LGHP+ GD Y Sbjct: 180 IERTVTPDGQKAVTHFYVT-CANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGG 238 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LH+E L+ HP +M F AP Sbjct: 239 --TRQEIGRQALHSEHLSFIHPLTQENMRFHAPLP 271 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P L ++Y+DD I+V++KP+G++ P + ++++ + YP + V Sbjct: 86 PSYVDLRVVYEDDKIIVIDKPAGMVVHPSPGH-YDNTLVNALIARYPDLLKQPTDRPGIV 144 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+I+VA L+ Q + R+ K+Y G P EG ++ P+ D Sbjct: 145 HRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGRIEAPIGRDLR 204 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V GK A TEY ++ T + +PITGR+HQ+RVH A+GHPI GD Sbjct: 205 DRTKMSVI-AGGKEAVTEYSTIQSLGKYTLAIA-RPITGRTHQIRVHFAAIGHPIAGDPI 262 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + R LHA L + P G + +P Sbjct: 263 YGNCRLEGL-NRQFLHASRLGVVMP-NGEYKEWHSPLP 298 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 252 bits (645), Expect = 5e-66, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 104/226 (46%), Gaps = 19/226 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------------DYPQA 57 ++ L ++Y+DD+++ VNKP G+++ P V + R + Sbjct: 73 EDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYRP 132 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAE-GLVDLPLI 116 VHRLD TSGVIVVA T A L F++RE +K Y+A G V+ P+ Sbjct: 133 GIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPARVEAPIG 192 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALG 172 R + V + AQT + + D A V +P TGR+HQ+RVH+ LG Sbjct: 193 RHPVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTHQIRVHLAHLG 252 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 PILGD Y + R LHA L++ HP G + APA Sbjct: 253 SPILGDAVYGRSSETML--RHALHAHFLSVPHPGTGRLLHLHAPAP 296 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 104/235 (44%), Gaps = 26/235 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR---------IQRDYPQAES 59 P++ L ILYQD+ + +VNKP+ ++ P + V + +A Sbjct: 104 PEDIPLDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFREHLSTGAGHLRAGI 163 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSGVI+VA R+L QF R+ K+YVA G ++ L Sbjct: 164 VHRLDKDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELERDSDYIEGALKMHP 223 Query: 120 PNRPKQKVCYE-TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K V + K A + YEV+E V ++P TGR+HQ+RVH+L +G +L D Sbjct: 224 YDRLKMIVSTDPDAKHALSYYEVLERFR-GFTLVKVQPRTGRTHQIRVHLLHVGCAVLAD 282 Query: 179 RFYASP---------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y E + R LHA L HP G + +AP Sbjct: 283 KIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWIEAEAPLP 337 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 99/240 (41%), Gaps = 35/240 (14%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P + L +L++D+ ++V+NKP+GL+ P H V I + V Sbjct: 64 PFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEERPGIV 123 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+IV+A A L QF+ER + Y A G G V L Sbjct: 124 HRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLARHPV 183 Query: 121 NRPKQKVCYET--------------GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRV 166 +R + GK A T +EV++ + + LK TGR+HQ+RV Sbjct: 184 DRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQR-KSGMSYLKLKLETGRTHQIRV 242 Query: 167 HMLALGHPILGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 HM G PI GD Y + E PR LLHA L THP M F Sbjct: 243 HMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKERMFFT 302 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESVHRLDMAT 67 +Y+D ++ ++NK +G++ P + E +D+++ I + VHRLD T Sbjct: 78 VYEDKYLAIINKYAGMVVHPSKGHE-EDTLVNAIMYKIKDLSGINGDLRPGIVHRLDKNT 136 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG+I++A +L F+ +E KK Y A V G + G ++ + + +R K V Sbjct: 137 SGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNPNDRKKMAV 196 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEAR 187 + GK A T +EV++ + + + + + TGR+HQ+RVH+ PILGD Y + Sbjct: 197 V-DNGKLAITNFEVID-SNEKFSLLKVDLETGRTHQIRVHLSHFFFPILGDSVYGRKDE- 253 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTF 213 R +LHA ML HP + Sbjct: 254 --YDRQMLHAYMLNFIHPITLEKIDV 277 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 9/219 (4%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDS----VMTRIQRDYPQA-ES 59 N P + L ILY+DD+ + +NKP+G + P V + + + Sbjct: 74 NSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRP 133 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 +HR+D TSGV+V+ + A +++ Q K Y V G +G + P+ Sbjct: 134 IHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIAL-A 192 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 P+ Q+ G PA T Y+V+E D + + TGR+HQ+RVH LGHP+LGD Sbjct: 193 PDSFIQRQISPEGSPAVTLYKVLERYQD-ASLLEFILETGRTHQIRVHCQHLGHPLLGDD 251 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y AR R LH+ + HP G T +AP Sbjct: 252 LYGGNLAR--INRQALHSSIYEFNHPLTGELTTIQAPLP 288 >UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BRU5_DESAD Length = 214 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 11/214 (5%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMAT 67 E L I+Y D I+VVNKPSGLLSVPGR E++D V+TR+Q+ +P+ +VHRLDM T Sbjct: 4 EKLLDIVYADRKIVVVNKPSGLLSVPGRGPENQDCVVTRVQKMFPECRKFPAVHRLDMDT 63 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG++V+ LT A REL QF++R+ KK+Y A + G G++++ D NRP Q Sbjct: 64 SGLLVLGLTARAVRELMEQFQKRQVKKRYEALLEGIVKEDSGVIEMAFRLDPYNRPYQVY 123 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASP 184 GK T + + + RV P+TGR+HQLRVH LG PI+GDR Y S Sbjct: 124 DPIHGKLGITHWRKLG-VENGMTRVEFTPLTGRTHQLRVHSAHPQGLGCPIVGDRLYGSG 182 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFK-APA 217 LHA L HP M F+ AP Sbjct: 183 TEPGQLK---LHAGYLCFEHPKTKEKMEFEIAPL 213 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 12/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVHR 62 P++ L I+Y+D + +VVNKP+G +P H +++ + Y + V R Sbjct: 98 PEKLPLDIIYEDAYCLVVNKPAGQACLPSMNHRH-NTLANGLTYYYQKNSIPSTVHIVTR 156 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD+ TSG+++VA + R +E + Y A V G SP G+VD P+ + Sbjct: 157 LDVNTSGLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSPTSGIVDAPIARKEGSI 216 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 ++ V GK A+T Y V+ YA + V +K TGR+HQ+RVH LGH + GD Y Sbjct: 217 IERTVDMRNGKYAKTNYRVL-YADSIASWVEIKLETGRTHQIRVHFQYLGHSLYGDNLYG 275 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + + R LH + +T+ HP + +A P D Sbjct: 276 GSKDIML--RQALHCKQITMMHPIKNQPIQLEASLPEDM 312 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 23/234 (9%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESV 60 N PQ L +Y+D +I+++NKP GL+ PG + + + R P+ + Sbjct: 76 INLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGII 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++V+A T + +L ++R+ ++Y + G+ G+V+ P++ Sbjct: 136 HRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISG-GIVNYPIMRHPF 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R GK + T Y+++ +T V + TGR+HQ+RVHML +G+P+LGD Sbjct: 195 KRICMTTD-SLGKKSITHYKIINRFKFHT-HVSFRLETGRTHQIRVHMLHIGYPLLGDPL 252 Query: 181 YASPE-------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + R LHA+ + HP M++ A P D Sbjct: 253 YGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQDM 306 >UniRef50_B7I1Q3 Dual specificity pseudouridine synthase n=17 Tax=Acinetobacter RepID=B7I1Q3_ACIB5 Length = 229 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 129/202 (63%), Gaps = 2/202 (0%) Query: 19 QDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKA 78 +DD ++VV+KP+GLLSV GRL EH DS R+ +P A+ HRLDMATSG+++ A + Sbjct: 29 EDDDLIVVDKPAGLLSVMGRLPEHHDSAYLRVLEKFPLAKVTHRLDMATSGLLMFAKHRD 88 Query: 79 AERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTE 138 AE + + F+ R KK Y+A V G EG V++PLI DW NRP+Q V +E GK A+T Sbjct: 89 AEVAVSKMFQARTVKKHYIALVQGQVKQ-EGRVEVPLITDWENRPRQIVHFELGKHAKTL 147 Query: 139 YEVVEY-AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHA 197 ++ + Y + +RV+L+P+TGRSHQLRVHM+ +GHPI+GD+ Y R R+ LHA Sbjct: 148 FQPLVYDETTDQSRVLLEPVTGRSHQLRVHMMHIGHPIMGDKLYHPEPKRFHLNRMALHA 207 Query: 198 EMLTITHPAYGNSMTFKAPADF 219 L HP G + ++ F Sbjct: 208 AYLAFQHPLKGTDVVIESQVPF 229 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 109/214 (50%), Gaps = 14/214 (6%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGVIV 72 ILY+DDHI+V+NKPSG G V+ ++ P+A VHRLD TSGV++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFG--VIEGLRALRPEARFLELVHRLDRDTSGVLL 152 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYET 131 VA ++A R L Q RE+ +K Y+A V G V PL+ + ++ V + Sbjct: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQE 212 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP------- 184 GKP++T ++V E A V P+TGR+HQ+RVH GHPI D Y Sbjct: 213 GKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLT 271 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 EA RL LHA L THP G M +AP D Sbjct: 272 EAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMD 305 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 27/223 (12%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKD---------SVMTRIQRDYP--------QAE 58 I+++D ++ V+NKPSG+L P ++ ++++ I + P +A Sbjct: 77 IIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILANPPKNFEKGITRAG 136 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+++A + + F RE K Y A V G +G++++P+ Sbjct: 137 LVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVVPDDKGIINVPIGRV 196 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + K E G+ A TEY V++ + + + L P+TGR++QLRVHM LG+P+LGD Sbjct: 197 TGGKIK---ASELGREAVTEYSVLQR-KETVSLMKLHPVTGRTNQLRVHMSWLGYPVLGD 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y A APRL+LH++ HP + F P DF Sbjct: 253 WLYKG----ATAPRLMLHSKSAEFEHPFTSKPVKFTVAPPKDF 291 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 11/221 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P L ILY+D ++MV++KP+ L+ P ++ V + R + V Sbjct: 76 PLAIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWSTASGEQRPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D T+G +++A +L++Q + ++ +++Y+A V G +D P+ D Sbjct: 136 HRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIGRDPN 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NR K V + K A T V+E D + + +GR+HQ+R H+ + HPI+GD Sbjct: 196 NRKKMVVTAKNSKKALTNIVVIERFND-YTYIECELESGRTHQIRAHLKYINHPIVGDPL 254 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + + + LHA L HP S+T A P +F Sbjct: 255 YGTVADKKESFGQYLHAYQLRFIHPVTKESLTITAALPQEF 295 >UniRef50_A6FXR5 Pseudouridine synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXR5_9DELT Length = 509 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 127/251 (50%), Gaps = 45/251 (17%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------------- 52 P + ++Y+DD ++VV+KP G+LSVPGR +DSV R++ Sbjct: 264 PDDAP-RVVYEDDDLLVVDKPPGMLSVPGRGPRRRDSVEYRLKARANPDAIEAAVAAQSK 322 Query: 53 -----------------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQ 95 D VHRLD+ATSG+++ A + A L+RQF R+ K+ Sbjct: 323 SKPPAGSEARTAAGPRLDQLWPRLVHRLDLATSGLLIAAKHREAYVALQRQFSSRQIGKR 382 Query: 96 YVARVWGHPSP---AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TAR 151 YVA V G G ++LPL D +RP+QKV GK A+T ++++ + ++ +R Sbjct: 383 YVALVRGPLPDALGEGGEIELPLARDLDDRPRQKVDRREGKVARTRWQLLAHEPEHAASR 442 Query: 152 VVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYG 208 V L P TGR+HQLR+H L P++GD Y E RL+LHAE LT HP G Sbjct: 443 VALYPHTGRTHQLRLHAAHPEGLDAPLVGDLLYGYGEG----ARLMLHAERLTFLHPTRG 498 Query: 209 NSMTFKAPADF 219 M ++P F Sbjct: 499 EPMELRSPCPF 509 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 11/213 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA------ESVHR 62 P+ L ILY+D H++ VNKP G+L P E ++ + + Q VHR Sbjct: 79 PERMELNILYEDAHLLAVNKPPGMLVHP-LTNETSGTLANGVLYHWLQQGTIDRFRPVHR 137 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++++A +++L+ Q ++ + ++Y+A V G P +G++ P+ + + Sbjct: 138 LDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPIALEEGSF 197 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K+ + GK A + Y+V+ + + V ++ TGR+HQ+RVHM +GHP+LGD Y Sbjct: 198 IKRMI-SPAGKEAISHYQVLRTF-NQASLVRVELETGRTHQVRVHMAHMGHPLLGDSLYG 255 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + R LH L HP G+ + Sbjct: 256 GDTSN--IKRQALHCAYLAFNHPVQGSRIKISC 286 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 111/221 (50%), Gaps = 15/221 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------A 57 ++ P++ L I Y+D+ I++VNKP+ ++ P + + ++ + + + Sbjct: 64 DSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSG-TLANGVAWYFKEKGLKALI 122 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V+RLD TSG++V A + L+ + K Y A V G EG +DLP+ Sbjct: 123 RPVNRLDRGTSGLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKM-EGEGRIDLPISR 178 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++ V E G A T Y+VV+ ++ + + +K TGR+HQ+RVH+ +GHPI+G Sbjct: 179 KPQSGIERMV-SEEGDRAITNYKVVK-SSKRFSLLKVKIETGRTHQIRVHLSHIGHPIVG 236 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y S + R LHA LT HP S++ +P Sbjct: 237 DTLYGSSDD--YIKRQALHAYRLTFVHPLEEKSISVYSPLP 275 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 11/216 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHR 62 + + ILY+D++ +VV+K +G+ SVPG+ + + +++ R++ V R Sbjct: 75 SDLPIKILYEDENWLVVDKVAGVTSVPGKADR-ETTMVNRVKGYLISEGAEDLVPHVVTR 133 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSGV ++A + A L +Q + K+Y A V G G +D P+ N Sbjct: 134 LDRFTSGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDDHGFIDAPIGR-MDND 192 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 ++ G+P+QTEY VV + T V ++ TGR+HQ+RVH +GHP++GD Y Sbjct: 193 FIRREVRADGRPSQTEYWVVNRMPNQT-LVKVQLHTGRTHQIRVHFKYIGHPLIGDEIYG 251 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P R R LHA L P ++P Sbjct: 252 GPMDRG-IERQALHAYWLEFYDPFSEIKRHIQSPLP 286 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 17/220 (7%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q+ + ILY+D+ + VV KPSG+ S G + V + + + VH Sbjct: 75 QDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIGGVERPGIVH 134 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T G++V+A + ++L F+ +E K Y A V+G E ++ + N Sbjct: 135 RLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIETFIRRHPTN 194 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K +V E GK A T+Y +E N + + +K TGR+HQ+RVHM +GHPI+GD Y Sbjct: 195 RLKFEVANE-GKLAITKYS-LEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHPIVGDTLY 252 Query: 182 ASPEA-------RAMAPRLLLHAEMLTITHPAYGNSMTFK 214 + + R LL A L+ HP M F+ Sbjct: 253 GYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPMEFE 292 >UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus RepID=Q1WS43_LACS1 Length = 296 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 13/215 (6%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHRLDM 65 L I+Y+D + +VV+KP L SVPG D+++ R++ Q + RLD Sbjct: 76 PLDIIYEDSNWLVVDKPPLLSSVPGPSNRT-DTLVNRVKFHLWQQKSKDLVPHVITRLDR 134 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++VA + A+ + +Q E K+Y+A V G + G++D PL + Sbjct: 135 DTSGLVLVAKHRFAQGLINKQVEEHSIDKKYLAVVEGIITEKHGIIDKPLGPRENGIGQM 194 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +TGK A+TEY V EY D V K TGR+HQ+R H ++ H ++GD Y Sbjct: 195 --VTDTGKIAKTEYWVREYLGDKATLVECKLHTGRTHQIRAHFSSINHALVGDELYGGR- 251 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 R LHA L P FK+ P D Sbjct: 252 LDWGLERQALHAYQLAYVDPFTQEEKLFKSEMPKD 286 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 10/218 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DYPQAESV 60 P + + ++Y+D++++VVNKP GL+ PG + D+++ + Y + V Sbjct: 71 EPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKS-DTLLHGLLYYLNSNCDHYIRPGLV 129 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++V+A + L Q ++ + Y A V G A L+D P+ D Sbjct: 130 HRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLIDAPIGPDKS 189 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 N V KPA+T +E +E N++ + K TGR+HQ+RVH L P+ GD Sbjct: 190 NTKIMTVNQARSKPARTHFEKIETYI-NSSLICCKLETGRTHQIRVHALHANIPLHGDPQ 248 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y P + L A L HP Y M F+ P Sbjct: 249 YGHP-SDTDKTGQYLCAARLEFVHPKYLKLMQFEIPLP 285 >UniRef50_Q12RE8 Pseudouridine synthase n=83 Tax=Bacteria RepID=Q12RE8_SHEDO Length = 593 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 18/223 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRL 63 NP + + ++YQD+H++V++KP+ LSVPG+ DSV TRI RD+P A VHRL Sbjct: 379 NPADDKQITVIYQDEHLLVISKPAEFLSVPGK--NISDSVHTRIIRDFPSASGPIIVHRL 436 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP----AEGLVDLPLICDW 119 DM+TSG++V+AL K A L++QF R K+Y+A + G EG++ LPL D Sbjct: 437 DMSTSGLMVIALNKEAHESLQKQFILRTVTKRYIALLDGLLPNRTAGDEGIISLPLRGDL 496 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPIL 176 +RP+Q VC+E GK A+T +++++ T +V L P TGR+HQLRVH L PI+ Sbjct: 497 DDRPRQLVCHEHGKSAETRWQIIDIQQGRT-KVFLYPKTGRTHQLRVHCAHSQGLHLPIV 555 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD Y A RL LHAE L+ THP ++ F+ ADF Sbjct: 556 GDDHYG-----VRASRLHLHAESLSFTHPQSREALHFQLDADF 593 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 249 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 11/216 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHR 62 P + L I+++D+H++++NKP L ++P R E + S+ I Y + V R Sbjct: 78 PYKIKLHIIFEDEHVIIINKPPHLPTIPTR-NEGEPSLAGAILAYYIENGIPSTFHAVSR 136 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG+++VA + + + E K+ YVA V G S +DLP+ + Sbjct: 137 LDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDDYNTIDLPISRKTTSI 196 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 +++V E GK A T YEV++ + + L TGR+HQ+RVHM A+GHP+LGD Y Sbjct: 197 IEREV-NEFGKSAITHYEVLKRYS-GATLLQLTLETGRTHQIRVHMSAIGHPLLGDTLYG 254 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LH+ L+ HP TF P Sbjct: 255 GD--VRYIDRQALHSHQLSFFHPINKREYTFHCPIP 288 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 20/231 (8%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------- 55 E+ + L I Y+D++++++NKPSGL+ P D+++ + + Sbjct: 66 ESNIEAVDMPLDIRYEDEYLLILNKPSGLVVHPAPGH-LNDTLVNALMYHFKNNLSDANG 124 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHR+D TSG++++A EL + + + K+ Y+A G ++L Sbjct: 125 LLRLGIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKINL 184 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAA---DNTARVVLKPITGRSHQLRVHMLA 170 P+ D NR + ++ GK + T +++ + V + TGR+HQ+RVH+ Sbjct: 185 PIQRDTKNRKLMSI-HKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHLAY 243 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + HP+ GD Y LHA L+ HP + + P +F Sbjct: 244 IKHPVYGDSIYGKSVDEFN---QRLHAYKLSFMHPVINKLIEVYSDIPKEF 291 >UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales RepID=C5WJF2_STRDG Length = 341 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 5/202 (2%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AESVHRLDMATSGVIVV 73 LY+DDH+++VNKP G+ + E + +++ + + VHRLDM TSGVIV Sbjct: 128 DCLYEDDHLIIVNKPEGMKTHGN--EPTELALLNHVSAYTGRTCYVVHRLDMETSGVIVF 185 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A T L R +RE + Y A V G S E P+ +R K+ V + G+ Sbjct: 186 AKTPFILPILNRLLEKREISRDYWALVHGTLSSKEVSYREPIGRHRHDRRKRVVDVKQGQ 245 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193 A T+ ++++ N + + + TGR+HQ+RVH+ GH +LGD Y+ +A PRL Sbjct: 246 KAVTDVKLLKSFKQNVSLINCRLQTGRTHQIRVHLSHHGHALLGDPLYSKGKAE--CPRL 303 Query: 194 LLHAEMLTITHPAYGNSMTFKA 215 +LHA L + HP + +A Sbjct: 304 MLHAHQLRLRHPLTQEMICVQA 325 >UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales RepID=A0Y082_9GAMM Length = 235 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 9/226 (3%) Query: 3 MENYNPPQEPW-LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------Y 54 ++N+ P+ ILYQD+ I+V+NKPSGLLS+ G+ E+ DSV R+ + Sbjct: 10 VDNFIAPKCIDTFSILYQDNDILVINKPSGLLSLSGKNSENWDSVHYRLVNGQKGLTPAF 69 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 +A+ VHRLD+ TSG+++V+L + + L +QF+ R KK YVA + G S G +D P Sbjct: 70 LKAKLVHRLDLGTSGIMLVSLNDVSSKHLNKQFQLRSVKKHYVAVLQGCISEDRGQIDAP 129 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGH 173 + D P+ K+C GKPA TE+ V++ A+ V P+TGR+HQLR+H +GH Sbjct: 130 IAKDTQLFPRVKICKLEGKPAVTEFNVIKRLANPVRTYVHFSPLTGRTHQLRIHSHFIGH 189 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 PILG Y S + ++ RL LHA L HP ++ P+ F Sbjct: 190 PILGCDLYKSAHSEKLSKRLQLHASDLFFEHPTTNQAIHIHCPSPF 235 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 10/210 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSV--PGRLEEHKDSVMTRIQRDYP---QAESVHRLDMATS 68 L ++Y DD + V++KP+G+ + PG ++ + + VHRLD TS Sbjct: 76 LRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANTS 135 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+A + A LK FR+R K+Y A V G+P P+ G+++ P+ D +R + + Sbjct: 136 GLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDLKHRDRFCID 195 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP---E 185 Y +G+ A T+Y E + + P TGR+HQ+RVH AL HP++GD Y + Sbjct: 196 Y-SGRDAVTQYSTEEVYP-GFTLLSVAPKTGRTHQIRVHFSALRHPLVGDVKYGADPVFS 253 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + R LHA L+ THP G + F++ Sbjct: 254 QKVNLKRQWLHAYHLSFTHPVSGVFVEFES 283 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 14/225 (6%) Query: 3 MENYNPPQE-PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-----RDYPQ 56 +Y P + +Y+D+H++V++KP+G++ P E I + + Sbjct: 84 ESSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEFK 143 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 ++RLDM T+G++++A + + + + + +K+Y+A V G P EG++D P+ Sbjct: 144 IRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAPIK 203 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPI 175 +Q E GKP+ TEY+VV + + N + + ++ TGR+HQ+RVH+ +G PI Sbjct: 204 AVEGEPRRQ--VMEGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQIRVHLKHIGCPI 261 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 LGD FY E+ A R LLH+ L THP + A P D Sbjct: 262 LGDEFYGGKES---ADRQLLHSRYLRFTHPVSKKIVELTANLPDD 303 >UniRef50_C2L1H2 Pseudouridine synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2L1H2_9FIRM Length = 335 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 35/253 (13%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA--- 57 M EN PP + L I+Y+D I++++KP+ L P K + + Sbjct: 77 MEEENSAPPYDFPLDIVYEDRDILLLDKPARLPCHPSPGHFEKTLAGAIVFYQMQNSSAS 136 Query: 58 ----ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV-- 111 +HRLD+ TSG+I++A + A L + +E ++ Y+A G+P + G + Sbjct: 137 SFVCHFIHRLDLDTSGLILLAKNRLAASVLNKDMKEGRIQRSYLAFCQGNPEFSLGEIQG 196 Query: 112 ------------------DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARV 152 P+ + + V ++ G+ A + + V+ Y + N + + Sbjct: 197 FTRLEEKKKKEFNYAFAISAPIARVEEEKMLRTVNFQKGQEALSYFNVLNYFPEKNYSLL 256 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-----RAMAPRLLLHAEMLTITHPAY 207 L+ TGR+HQ+RVH+ L P+LGD Y + E R LH+ ++ THP Sbjct: 257 QLQLATGRTHQIRVHLSYLSCPLLGDSLYGNGEESVFSQNIGLSRQALHSYSISFTHPIR 316 Query: 208 GNSMTF--KAPAD 218 M F + P D Sbjct: 317 KEKMFFQRELPPD 329 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 13/220 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA------ESVHR 62 P + L I+Y+D+ I+V+NK +G+ P + + +++ + + + ++R Sbjct: 64 PVKLPLSIVYEDEDILVINKDAGVPIHPSQGH-YDNTLANAVSWYFHEKGEAFTYRVINR 122 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD T+G++V+A + L Q R +++Y A V GH +P EG VD P+ + Sbjct: 123 LDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGH-TPEEGTVDSPIARAEGST 181 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 +++V +ETG+ A T + + Y + + V L TGR+HQ+RVHM ++GHP+ GD Y Sbjct: 182 IERRVDHETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRSIGHPLPGDFLY 241 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 R LH+ +L HP G M F A P D Sbjct: 242 CPD--YRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDM 279 >UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P480_PHYIN Length = 363 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 120/223 (53%), Gaps = 17/223 (7%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIV 72 L IL++DD ++VVNKP+ +LSV G + SV + R YP A VHRLD TSG++V Sbjct: 116 PLKILFRDDAVIVVNKPANILSVDGTDPDALMSVHRCVARVYPNARMVHRLDQETSGLLV 175 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHP-------SPAEGLVDLPLICDWPNRPKQ 125 VALTK+A + L QFR+R K YVARV G S + V +P+ Q Sbjct: 176 VALTKSAAQSLNAQFRDRSVDKTYVARVDGWMMNDLEEKSESPRRVQIPMEKHLTKSLIQ 235 Query: 126 KVCYE------TGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHPI 175 V + + + TEY V+ + V LKP+TG++HQLR+HM LGHPI Sbjct: 236 HVVSDREVDPSSSLWSTTEYSVLSRDESGDDRKSTLVELKPVTGKTHQLRLHMQHLGHPI 295 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y+ A RL LHA L+ THP +TF++P Sbjct: 296 LGDSLYSPDVVYHRASRLCLHAAKLSFTHPVTNERLTFESPCP 338 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 16/230 (6%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD--SVMTRI-------QRD 53 E N + I+Y DD ++V++KP G+ S + + + D Sbjct: 81 EEQNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGIDIKTTLCD 140 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + V RLD+ TSG+++V T A +K QF + KK Y A V G + + +D Sbjct: 141 ESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQDKATIDA 200 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ + + + GKPA T ++V+E + V + TGR+HQ+RVH ++GH Sbjct: 201 PIGRAKVSDFRFTI-TSDGKPAVTHWDVLERFSQ-ATLVSVNLETGRTHQIRVHFSSIGH 258 Query: 174 PILGDRFYASPE---ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 P++GD Y + + R LH+ LT THP G S+T K+ P D Sbjct: 259 PLVGDSMYGANPVLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKSHYPLD 308 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 12/219 (5%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VH 61 PQE ++Y+D ++V+NK G++S P + KD++ Q + V+ Sbjct: 80 EPQEIPFNVVYEDIDVIVINKEPGIVSHPTKSHP-KDTIANAAQNYLEKKGVACRIRFVN 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLDM TSG++V+A + +Q + E K+YVA V G EG +D + + Sbjct: 139 RLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVANEGEIDGAIYRS-SD 197 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 ++V + G+ + T++ V+E AD T + +TGR+HQ+RVHM ++GHP+LGD Y Sbjct: 198 ETIKRVVDDRGQQSLTKFTVLERYADATML-EVSLLTGRTHQIRVHMESIGHPMLGDHLY 256 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 + + R LHA L+ P Y + +A P D Sbjct: 257 GYVDTE-LIRRQALHASYLSFLQPRYKEKIEVRASLPKD 294 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 11/216 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------VHR 62 P + +LY+D+ I+VVNKP+ + P L + +++ + ++R Sbjct: 76 PTPLNIPVLYEDEDILVVNKPADMPVHPS-LGNYTNTLANGVAAYLETKGESCPFRCINR 134 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG +++A + L Q R R+ + Y+A V G P G + P+ + Sbjct: 135 LDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQ-SGTISAPISRAADSV 193 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 ++++ +E G+ A T Y+++E +N + + + TGR+HQ+RVHM +GHP+ D Y Sbjct: 194 IERRIDFENGESAITHYQLLE-VKNNHSLLEIHLETGRTHQIRVHMGYIGHPLPADYLYN 252 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LH+ L HP G M AP Sbjct: 253 P--VYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVP 286 >UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID=B9DS29_STRU0 Length = 301 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 12/206 (5%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAESVHRLDM 65 L I+Y+DDH +V+NKP G S+P + H +++ I+ Y Q V RLD Sbjct: 75 PLDIVYEDDHFLVLNKPVGYASIPSAI--HSNTIANFIKAYYFEQNYPNKQVHIVTRLDR 132 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS-PAEGLVDLPLICDWPNRPK 124 TSG+++ A A L +Q ++R +K+Y A V G+ P G + P+ + Sbjct: 133 DTSGLMLFAKHGYAHARLDKQLQKRSIEKRYFALVSGNGQLPDFGEIVEPIGRS-KDSII 191 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + GK A+T YEVV A+N V +K TGR+HQ+RVH +G P+LGD Y Sbjct: 192 TRTVDPMGKYAKTTYEVVARFAENVHLVDIKLHTGRTHQIRVHFSHIGFPLLGDDLYGGR 251 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNS 210 R LH L+ +P N Sbjct: 252 MDLG-IERQALHCHFLSFFNPFTENE 276 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMATSGVIV 72 ILY+DD +M++NKPSG+ G + ++ ++ P+ E VHR+D TSG+++ Sbjct: 94 ILYEDDALMLINKPSGVAVHGGSGLQFG--LIEGLRALRPKEKSLELVHRIDRDTSGLLL 151 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYET 131 VA ++ R L Q R +E KQY+A V G V+ PL + ++ V Sbjct: 152 VAKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKRVRSVEAPLKKNTLKSGERIVRVDAE 211 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE-----A 186 GK + T + + + + T V P+TGR+HQ+RVH L GHPI D Y + + Sbjct: 212 GKASLTRFRIQQRYKEGT-LVEASPVTGRTHQIRVHALHAGHPIAKDPKYGDTDFDNTMS 270 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R RL LHA L HP G + F+AP D Sbjct: 271 RLGLNRLFLHAWQLRFLHPVTGKEVAFEAPLD 302 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 23/226 (10%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM-----TRIQRDYPQAESVHRLD 64 + L ++++D H++V++KP+GL+ P + P+A VHRLD Sbjct: 115 EAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAHLPRAGIVHRLD 174 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + A L R R+ K++Y+A V G ++D PL D +R + Sbjct: 175 KDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDAPLGRDPVSRVR 234 Query: 125 QKVCYETGKPAQTEYEVVE----------------YAADNTARVVLKPITGRSHQLRVHM 168 + +GKPA+T+ + A + V + TGR+HQ+RVH+ Sbjct: 235 MAIV-ASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLHTGRTHQIRVHL 293 Query: 169 LALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 + GHP+L D Y A + R LHA L + HP G + F+ Sbjct: 294 ASRGHPLLADAMYGGAPAFGL-QRQALHAARLHLLHPIDGRPLAFE 338 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 11/220 (5%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------PQA 57 Y PP+ L I+ +D+ I +VNK G+ P L ++ + + P Sbjct: 73 NQYLPPEPLDLSIISEDEDIALVNKQPGMCVHPT-LAYPSGTLANGLVYHWLENNPAPTF 131 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 +V+R+D TSG+++VA + ++L Q + ++ + YVA V G G +DLPL Sbjct: 132 HAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNGYIDLPLEK 191 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 K+++ TG+ A T +EV++Y D T + L P TGR+HQ+RVH+ LGHP++G Sbjct: 192 CEGKTTKRQI-SSTGQQALTRFEVLQYITDCT-LIRLMPETGRTHQIRVHLSHLGHPLVG 249 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 D Y A+ R LHA+ ++ HP G+ M+F+ P Sbjct: 250 DTLYGGSIAQ--IGRHCLHADKISFLHPRTGHPMSFQIPL 287 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 9/209 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AESVHRLDMATSGVIVVA 74 I+Y+DDH++++NKPSG G R R + E VHR+D TSG+++VA Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLELVHRIDRDTSGILLVA 156 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 ++A R L+ QFRE+ +K Y A V GH +V+ PL+ + N + GKP Sbjct: 157 KKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVR--VNPNGKP 214 Query: 135 AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE-----ARAM 189 ++T + ++E A+ V P+TGR+HQ+RVH +GHPI D Y A+ Sbjct: 215 SETRFRILEKFAE-ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFG 273 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL LHA + HPA + AP + Sbjct: 274 IERLFLHAANIQFVHPASEKKLEIHAPLE 302 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 245 bits (626), Expect = 9e-64, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 10/216 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE------SVHR 62 P I Y+DD +++VNKP+G P ++DS+ Y Q V+R Sbjct: 75 PVPGPFDIAYEDDDLLLVNKPAGTPVHPSPGH-YEDSLANYSAWQYAQRREQLVFRPVNR 133 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++ VA A+ L +Q ++ Y A V G PSPA G +DLP+ + Sbjct: 134 LDRGTSGLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCGAPSPAAGTIDLPIGRTPGSV 193 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K++V + + A T YE V + ++ TGR+HQ+RVH LG P+ GD Y Sbjct: 194 LKRRVDPQGAR-AVTHYETVRVNGA-YTLLKIRLETGRTHQIRVHFAHLGCPLFGDFLYG 251 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + E R + LH+ + + HP G + P Sbjct: 252 T-ERRDVVEGHALHSGEIRLLHPISGEEIRCSVPLP 286 >UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D n=23 Tax=Borrelia RepID=RLUD_BORBU Length = 326 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 13/210 (6%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------- 55 + P + I+Y+D +++V+NKP G+LS PG + D+V+ + Sbjct: 75 DCLRPSNIPIAIIYEDSNVIVLNKPQGILSHPG-ISHWDDTVVNFLLYHIKSLKINFNEE 133 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSGV++ A + R L +QF+++ K Y+A V G+ + G ++ Sbjct: 134 KIRPGIVHRLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIVKGNFNSFFGSIES 193 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 + D NR K V + GK A TEY ++ + + + LKP TGR+HQLRVHM L Sbjct: 194 FIDRDKHNRKKFSVSKDRGKKALTEYRLLLNFGE-YSLLALKPKTGRTHQLRVHMKYLNF 252 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTIT 203 PILGD Y + L+LH+ L I Sbjct: 253 PILGDEVYGRVDGSLKKITLMLHSYKLEID 282 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHR 62 P++ L I Y+DD++++VNKP+G L P E H + ++ VHR Sbjct: 72 EPEDLPLDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYKAHGEHHAYHPVHR 131 Query: 63 LDMATSGVIVVALTKAAERELK-RQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 LD TSG++++A + +L R + ++Y+A + G +P EGL+D P+ P+ Sbjct: 132 LDRNTSGLVLIAKVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPEGLIDAPIARALPS 191 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 +KV G+ A+T Y+ V+ + + L TGR+HQ+RVH+ LGHP+LGD Y Sbjct: 192 IILRKV-SPDGQTARTHYDTVQTDG-KLSLIHLVLDTGRTHQIRVHLAHLGHPLLGDDLY 249 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 AR R LHA L HP G + + P Sbjct: 250 GGNLAR--IKRQALHAARLHFRHPMTGAEIDVQVPLP 284 >UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepID=B5YAZ5_DICT6 Length = 226 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 13/215 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVM---TRIQRDYPQAE-----SVHRLDM 65 L ++Y+D+H++VVNKP+G+L G + + + I+ Y + VHRLD Sbjct: 7 LEVIYEDNHLLVVNKPAGILVQ-GDITKSTTLLEISKAYIKEKYKKPGNVFLAIVHRLDK 65 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 SGV++ A + L FRER+ +K+Y+A G +G + L+ R + Sbjct: 66 PVSGVVIFARNSKSAGRLSEAFRERKVEKEYIALCKGIFKVKKGTISESLLWVEKERKAR 125 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 + K A T YEV+E N + V L P TGR HQLR H+ +GHPILGD Y Sbjct: 126 VSQDDKSKNAITHYEVLEEFK-NLSLVRLIPETGRKHQLRAHLSYIGHPILGDEKYGGG- 183 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAP-ADF 219 R R+ LH + + + HP + M F+A DF Sbjct: 184 -RIFKDRIFLHCKKMAVPHPVRKDIMEFEAKIPDF 217 >UniRef50_C8Q1E7 Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q1E7_9GAMM Length = 243 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 92/210 (43%), Positives = 128/210 (60%), Gaps = 10/210 (4%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 LY+DD I V++KP GLLSV G+ E K S+ +R+ + P + +HRLDM TSG+I+ A Sbjct: 37 LYRDDDIWVIDKPHGLLSVDGK--ELKVSLQSRLLKADPNVKLIHRLDMDTSGIIIFARH 94 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 A+ + +QF +R P K+Y A VWG P P +G +D+P+ D P +PK V K A Sbjct: 95 SEAQTHISKQFIDRIPSKEYQALVWGTP-PQQGEIDVPVRYDPPQKPKHIVDMSWDKRAY 153 Query: 137 TEYEVVE---YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA----SPEARAM 189 T+YE + +RV L P+TGRSHQLRVHML +GH +LGD YA + +A + Sbjct: 154 TKYETLHHELREGKAVSRVALYPVTGRSHQLRVHMLHIGHVMLGDPIYAQDVLNGQAFDL 213 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPADF 219 +PRL LHA L + HP G M +++P F Sbjct: 214 SPRLCLHARKLRLKHPNTGVWMEWESPVPF 243 >UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus RepID=Q38W13_LACSS Length = 300 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 12/213 (5%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHRLDM 65 + +LY+DD+ +VVNKP+GL ++PG D+++ RI+ + Q + RLD Sbjct: 78 PIKVLYEDDYWLVVNKPAGLATIPGPTNTT-DTLLNRIKGYWQQNGATDLVPHIITRLDF 136 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++ A + A+ L+ Q + + +K Y+A V G P G + P+ P++ Sbjct: 137 DTSGIVLAAKHQVAQSLLQPQIEQHQLQKFYLAVVAGTGLPEFGTIKAPIGR-VGVEPRR 195 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +V + G+ A T+Y + + + ++ TGR+HQ+RVH+ L HP++GD+ Y P Sbjct: 196 RVIAD-GQSAWTDYWRLAQD-ERLTVLKVQIHTGRTHQIRVHLSDLDHPLVGDQLYEGPL 253 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA LT P F AP Sbjct: 254 G-WGIDRQALHAYQLTFNDPFSQQKRQFTAPIP 285 >UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3I7_9FIRM Length = 294 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHR 62 P+ L I+Y+DD ++V++KP+G L P E H ++ ++ Y HR Sbjct: 72 PESLPLSIIYEDDDLLVLDKPAGQLVHPTTKETHG-TIANAVRGYYAACGVHLDFHPCHR 130 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++++A + ++ +Q +++Y+A + G +P EG +D+P+ P+ Sbjct: 131 LDRNTSGLLLIAKHPEVQYQIAQQ---NTLRREYLALIAGSLTPPEGCIDVPIARALPSI 187 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + V E GK A T Y V+ + + L+ TGR+HQ+RVH+ LGHP+LGD Y Sbjct: 188 ILRCVSTE-GKSACTHYVTVQTDG-RYSLLRLQLDTGRTHQIRVHLAHLGHPLLGDDLYG 245 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 RA R LH+ LT+ HP + A PAD Sbjct: 246 G--TRAEIARHALHSAHLTLVHPRTKKMLALSALLPADM 282 >UniRef50_B2J8D4 Pseudouridine synthase n=7 Tax=Cyanobacteria RepID=B2J8D4_NOSP7 Length = 575 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 88/212 (41%), Positives = 128/212 (60%), Gaps = 10/212 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMA 66 +E L I+Y+D+ ++ VNKP GLLSVPGR + +DSV++R++ P SVHRLD Sbjct: 364 EEVTLPIIYEDEWLIAVNKPPGLLSVPGRYRDRQDSVLSRLRHLLPDGMALASVHRLDQE 423 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++++A + ++L +QF++R+ K Y A + G +G++DLPL D NRP QK Sbjct: 424 TSGILLLARDRQTHKQLSQQFQQRQVHKVYEAILSGVAIAEKGVIDLPLWGDPENRPYQK 483 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML---ALGHPILGDRFYAS 183 V ++ GKP+ T+++V+ D R+ P+TGR+HQLRVH LG ILGDR Y Sbjct: 484 VDWQNGKPSLTQFQVISREQD-YTRIEFTPLTGRTHQLRVHAADVRGLGITILGDRLYGC 542 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 A+ RL LHA L HP ++ KA Sbjct: 543 D---AVTSRLYLHARELDFEHPQLKKTLYLKA 571 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGVIV 72 IL++DD+++V+NKPSG G V+ ++ P+A VHRLD TSGV++ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFG--VIEGLRALRPEARFLELVHRLDRDTSGVLL 152 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYET 131 VA ++A R L Q R + +K Y+A V G + PL+ + ++ V Sbjct: 153 VAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSE 212 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE-----A 186 GKP++T +++ E ++ V P+TGR+HQ+RVH L GHPI D Y E Sbjct: 213 GKPSETRFKIEERF-EHATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYGYREFDQQLQ 271 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL LHA L HP G +M +AP D Sbjct: 272 GTGLHRLFLHAAALRFEHPNTGETMRIEAPLD 303 >UniRef50_D1XZI5 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XZI5_9BACT Length = 577 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 118/218 (54%), Gaps = 21/218 (9%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGR-LEEHKDSVMTRIQRDYPQAESVHRLDMATSGV 70 + IL++D+++ V++KP+GLLSVPG+ L +++ + + + VHRLDM TSG+ Sbjct: 360 IEIPILFEDNYLAVIDKPAGLLSVPGKKLATSVYALLKQKWQGRCKPYMVHRLDMDTSGL 419 Query: 71 IVVALTKAAERELKRQFREREPKKQYVA-----RVWGHPSPAEGLVDLPLICDWPNRPKQ 125 +VVA +L++QF R K+Y A + + P G + LPL D +RP+Q Sbjct: 420 MVVAKQAHVYHDLQQQFINRTVNKRYTAFLPLSLLDKNLPPK-GKIILPLTADLFDRPRQ 478 Query: 126 KVCYETGKPAQTEYEVV------EYAADNTARVVLKPITGRSHQLRVHMLA---LGHPIL 176 KV E GK A T YE+V E RV+L P TGR+HQLRVH LG PI+ Sbjct: 479 KVDKEVGKIAITTYEIVGKTHYGERLKQLAVRVLLYPHTGRTHQLRVHCAHSEGLGTPII 538 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 GD Y + A RL L+A+ L HP MTF Sbjct: 539 GDNLYGNK-----ANRLHLYADRLRFVHPITHKEMTFS 571 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 105/221 (47%), Gaps = 14/221 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHR 62 P+ ++ + +VV+KP+GL++ PG +++ + YP +A VHR Sbjct: 94 PEPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSG-TLLNGLLHRYPELARVARAGIVHR 152 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++VVA + A+ L RQ + R ++Y+A G P G VD P+ D Sbjct: 153 LDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWL-PVAGKVDRPIGRDARVP 211 Query: 123 PKQKVCYETG-KPAQTEYEVVEYAA---DNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + V KPA T Y + V + TGR+HQ+RVH+ +LGHP+L D Sbjct: 212 VRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLASLGHPLLAD 271 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA-PAD 218 Y A A R +LHA L P G F+A P D Sbjct: 272 TLYGGRLT-AGATRQMLHARALHFDDPGGGGPAAFRADPPD 311 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 104/214 (48%), Gaps = 9/214 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 + +LY+DD ++VVNKP+G++ G E + R HRLD TSGV+++ Sbjct: 94 IPVLYEDDSLLVVNKPAGMVVHGGSGHEAGLIEALKQSRGLDDLRLAHRLDRDTSGVLLM 153 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP-KQKVCYETG 132 A A R L FRER+ +K Y A + GHP G + L + V E G Sbjct: 154 AKHLDALRRLTESFRERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDSEEG 213 Query: 133 KPAQTEYEVV---EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA- 188 K + T+Y+V+ E A V L P +GR+HQLRV + GHPILGD Y A Sbjct: 214 KASVTDYQVMIEYERHGFPYAMVALNPHSGRTHQLRVQLQHEGHPILGDGKYGEKAQLAA 273 Query: 189 ----MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 L+LHA L THP G S+ KAP Sbjct: 274 YKSLGGKGLMLHAWRLRFTHPVSGKSLECKAPWP 307 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRL-EEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVA 74 IL++D H++V+NK +GL G H D ++ + VHRLD TSGV+V+A Sbjct: 96 ILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLADGGETPRLVHRLDKDTSGVLVLA 155 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP-KQKVCYETGK 133 T+AA R L FR RE K Y A V G P +G + L R + ++ E GK Sbjct: 156 RTQAAARALTSAFRSREALKVYWAIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEEGK 215 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP----EARAM 189 A T++ VV+ AA A V L P TGR+HQLRVH L +G PILGD Y P E + Sbjct: 216 RAVTDFRVVDQAAKACAWVELHPRTGRTHQLRVHCLEMGTPILGDGKYGGPGAFLEGTEL 275 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R+ LHA L + HPA G + AP Sbjct: 276 PKRMHLHARALALPHPAGG-VLEIIAPPP 303 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 345 4e-94 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 342 4e-93 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 339 6e-92 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 332 4e-90 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 331 1e-89 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 329 6e-89 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 328 9e-89 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 325 5e-88 UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 325 7e-88 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 324 2e-87 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 324 2e-87 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 324 2e-87 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 324 2e-87 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 323 2e-87 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 323 2e-87 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 322 4e-87 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 322 6e-87 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 322 8e-87 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 321 1e-86 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 320 2e-86 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 320 3e-86 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 318 9e-86 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 317 2e-85 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 317 3e-85 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 315 5e-85 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 315 6e-85 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 315 7e-85 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 314 2e-84 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 312 4e-84 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 312 7e-84 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 312 7e-84 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 311 8e-84 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 311 1e-83 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 311 1e-83 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 311 1e-83 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 311 1e-83 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 310 1e-83 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 310 2e-83 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 309 3e-83 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 309 5e-83 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 309 5e-83 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 309 5e-83 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 309 6e-83 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 308 1e-82 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 307 2e-82 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 307 2e-82 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 307 2e-82 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 307 2e-82 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 307 2e-82 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 307 2e-82 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 306 3e-82 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 306 3e-82 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 306 3e-82 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 306 3e-82 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 305 5e-82 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 305 5e-82 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 304 1e-81 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 304 2e-81 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 304 2e-81 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 303 2e-81 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 303 2e-81 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 303 2e-81 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 303 3e-81 UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K9... 303 3e-81 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 302 6e-81 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 302 7e-81 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 301 9e-81 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 301 1e-80 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 301 1e-80 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 300 2e-80 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 300 2e-80 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 300 2e-80 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 300 2e-80 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 299 4e-80 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 299 4e-80 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 299 4e-80 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 298 6e-80 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 298 6e-80 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 298 8e-80 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 298 9e-80 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 298 1e-79 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 297 1e-79 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 297 2e-79 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 297 2e-79 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 296 3e-79 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 296 4e-79 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 295 5e-79 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 295 5e-79 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 295 5e-79 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 295 6e-79 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 295 6e-79 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 295 1e-78 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 294 1e-78 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 294 1e-78 UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A... 294 2e-78 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 294 2e-78 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 293 2e-78 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 293 2e-78 UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID... 293 2e-78 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 293 2e-78 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 293 4e-78 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 292 4e-78 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 292 4e-78 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 292 5e-78 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 292 6e-78 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 292 6e-78 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 292 7e-78 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 292 8e-78 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 291 1e-77 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 291 1e-77 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 290 2e-77 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 290 2e-77 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 290 2e-77 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 290 3e-77 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 290 3e-77 UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2... 290 3e-77 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 290 3e-77 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 289 4e-77 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 289 4e-77 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 288 6e-77 UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria Re... 288 6e-77 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 288 6e-77 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 288 7e-77 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 288 7e-77 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 288 8e-77 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 288 8e-77 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 288 8e-77 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 288 9e-77 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 288 1e-76 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 288 1e-76 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 287 1e-76 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 287 1e-76 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 287 2e-76 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 287 2e-76 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 287 2e-76 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 287 2e-76 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 286 3e-76 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 286 3e-76 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 286 3e-76 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 286 3e-76 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 286 3e-76 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 286 4e-76 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 286 4e-76 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 285 5e-76 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 285 5e-76 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 285 7e-76 UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 285 7e-76 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 285 7e-76 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 285 9e-76 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 285 1e-75 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 284 1e-75 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 284 1e-75 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 284 1e-75 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 284 2e-75 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 283 2e-75 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 283 2e-75 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 283 3e-75 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 283 3e-75 UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 282 5e-75 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 282 5e-75 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 282 6e-75 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 282 6e-75 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 282 8e-75 UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A... 281 1e-74 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 281 1e-74 UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lac... 281 1e-74 UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 280 2e-74 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 280 2e-74 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 280 2e-74 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 280 3e-74 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 280 3e-74 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 280 3e-74 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 279 3e-74 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 279 4e-74 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 278 8e-74 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 278 1e-73 UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A... 277 1e-73 UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria R... 277 1e-73 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 277 2e-73 UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 276 3e-73 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 275 6e-73 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 275 6e-73 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 275 9e-73 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 274 1e-72 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 274 1e-72 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 274 1e-72 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 274 2e-72 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 273 3e-72 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 273 3e-72 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 273 4e-72 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 273 4e-72 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 273 4e-72 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 272 5e-72 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 272 5e-72 UniRef50_C2L1H2 Pseudouridine synthase n=1 Tax=Oribacterium sinu... 272 6e-72 UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus Rep... 272 6e-72 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 272 8e-72 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 272 9e-72 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 271 1e-71 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 271 1e-71 UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales ... 270 2e-71 UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID... 270 2e-71 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 270 3e-71 UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID... 269 6e-71 UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=... 268 7e-71 UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timone... 268 7e-71 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 268 8e-71 UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales... 268 9e-71 UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 268 1e-70 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 268 1e-70 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 268 1e-70 UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus Rep... 268 1e-70 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 268 1e-70 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 267 1e-70 UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aerug... 267 2e-70 UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bif... 267 2e-70 UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 267 2e-70 UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D... 267 3e-70 UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri ... 267 3e-70 UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D... 266 3e-70 UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter... 266 3e-70 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 266 4e-70 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 266 4e-70 UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria Rep... 266 4e-70 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 266 4e-70 UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma prot... 266 4e-70 UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 266 5e-70 UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 T... 265 6e-70 UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 265 7e-70 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 265 8e-70 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 265 9e-70 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 265 9e-70 UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 265 9e-70 UniRef50_D2EJM0 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 265 1e-69 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 265 1e-69 UniRef50_A5VLP2 Pseudouridine synthase, RluA family n=13 Tax=Lac... 264 1e-69 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 264 1e-69 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 264 2e-69 UniRef50_C0X7U3 Pseudouridine synthase n=21 Tax=Enterococcus fae... 264 2e-69 UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 263 2e-69 UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 263 2e-69 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 263 2e-69 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 263 2e-69 UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elo... 263 3e-69 UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopne... 263 3e-69 UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergen... 263 3e-69 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 263 3e-69 Sequences not found previously or not previously below threshold: UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 274 1e-72 UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Ta... 273 3e-72 UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4... 270 2e-71 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 345 bits (888), Expect = 4e-94, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 110/223 (49%), Gaps = 9/223 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYP 55 E P+E L I+Y+D+ ++VVNK +G++ P V + Sbjct: 72 ELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVL 131 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG++VVA A + L Q +E++ ++Y V G+ EG++DLP+ Sbjct: 132 RPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPI 191 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K V GK AQT Y+V+E + K +TGR+HQ+RVH LGHP+ Sbjct: 192 GRHPRDRQKMAVVS-NGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRVHFSYLGHPV 250 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y R +LHA L+ HP G + F AP Sbjct: 251 LGDPKYGHQNNPFGVKRQMLHAIKLSFIHPRSGELLEFTAPLP 293 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 342 bits (880), Expect = 4e-93, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 12/222 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L I++QD I V+NKP+GL+ P V + + V Sbjct: 107 PEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDLSGINGELRPGIV 166 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++VVA A L Q ++ +++Y+A V G G V+ P+ D Sbjct: 167 HRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAETGRVEAPIGRDPK 226 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R + V GK A T + V+ + + + + TGR+HQ+RVH+ +GHP+ GD Sbjct: 227 DRQRMAVI-AGGKSAITHFRVLARYPEQGFSLLHCRLETGRTHQIRVHLAHIGHPVAGDP 285 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y +A LHA L HP G M F+A P F Sbjct: 286 KYGPRKAAFGLTGQALHAWKLEFVHPRSGEPMRFQADPPEPF 327 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 9/222 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYP 55 E + L ILY+D+ ++VVNK G++ P K V + Sbjct: 97 ELKVEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVL 156 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHR+D TSG++VVA A + L Q + ++Y+A V G G V+ P+ Sbjct: 157 RPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPI 216 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 D +R K V ++ K A T YEV+E D + + TGR+HQ+RVHM L HP+ Sbjct: 217 GRDPADRKKMAVVFQNAKEAVTHYEVLERFRD-FTLLEARLETGRTHQIRVHMAYLKHPV 275 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 LGD Y + +LHA++L HP G M F APA Sbjct: 276 LGDPLYGPRKNPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPA 317 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 111/219 (50%), Gaps = 10/219 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAES 59 PQE L ++Y+D ++V+NKP GL+ PG V + + Sbjct: 74 QPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLRPGI 133 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG+IV A + L +Q E+ +QY A V G + G +D P+ D Sbjct: 134 VHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRDE 193 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 +R K V + +PA T ++VVE DN V + TGR+HQ+RVHM +G PI+GD Sbjct: 194 KDRQKMAVTEKNSRPAITHFKVVERF-DNYTLVSCRLETGRTHQIRVHMQYIGFPIVGDP 252 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y+ + +LHA L+ THP+ G MTF+AP Sbjct: 253 KYSLRKTLPT-QGQMLHAYQLSFTHPSTGERMTFEAPLP 290 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 105/219 (47%), Gaps = 10/219 (4%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L ILY+D I+V+NK G++ P V + + V Sbjct: 75 PEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLSGINGEIRPGIV 134 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V A AA +L Q R + + Y A V G+ G++ + Sbjct: 135 HRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPT 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K + +E GKPA T + V+E V + TGR+HQ+RVHM ++GHP+LGD Sbjct: 195 DRKKMAIVHEHGKPAVTHFRVLERFGA-YTLVECRLETGRTHQIRVHMASIGHPVLGDPK 253 Query: 181 YASPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A LH+ LT+THP MTF AP Sbjct: 254 YGPRKACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLP 292 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 14/228 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DY 54 E P+ L ILY+D+ ++++NKP G++ P V + Sbjct: 89 EAEIIPENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGE 148 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHR+DM T+GVI+ + R + Q +E K++Y A V+G EG ++ Sbjct: 149 LRPGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGS 208 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSHQLRVHMLA 170 + +R K V GKPA T Y V+ +N A + + TGR+HQ+RVHM + Sbjct: 209 IGRSKTDRKKMAVI-PDGKPAVTHYRVIRNYTSPNGNNFAHIECELETGRTHQIRVHMTS 267 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GHP+LGD Y + + LHAEML HP G M F AP Sbjct: 268 IGHPLLGDEIYGAAKNPFKLDGQALHAEMLGFVHPRTGEYMEFHAPLP 315 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 328 bits (842), Expect = 9e-89, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 14/228 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DY 54 E P+ L ILY+D+ ++V+NKP+GL+ P + V + D Sbjct: 75 EENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDP 134 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSGV+VVA + L ++F+ER+ K Y+A V G EG ++LP Sbjct: 135 NRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLP 194 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 L R K+ V Y GK A TEY+ ++ D V ++ TGR+HQ+RVH +G+P Sbjct: 195 LGRHPILRHKRAVVY-NGKEAITEYKTLKEFGDLATLVWIRLRTGRTHQIRVHFKYIGNP 253 Query: 175 ILGDRFYASPEARAMAP----RLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y + R +LHA L HP M F AP Sbjct: 254 LIGDSLYGKNKIEKNLQIPVGRQMLHALKLGFYHPKTKEWMEFLAPLP 301 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 115/222 (51%), Gaps = 11/222 (4%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAES 59 PQ+ L ILY+D+ ++V+NK SG++ P V + + Sbjct: 71 QPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGI 130 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG +V+A A + L QF R +K+Y+A V G PS + G V + Sbjct: 131 VHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHP 190 Query: 120 PNRPKQKVCYET-GKPAQTEYEVV-EYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 NR K V GK A T+Y+++ + +++ V+ TGR+HQ+RVHML LGHP++G Sbjct: 191 VNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRVHMLYLGHPLIG 250 Query: 178 DRFYASPEARAMAP-RLLLHAEMLTITHPAYGNSMTFKAPAD 218 D YA P + P RL+LHA L HP G M F+AP Sbjct: 251 DPIYAKPARQKAKPGRLMLHAWRLGFDHPRTGKRMDFEAPVP 292 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV Sbjct: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP Sbjct: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 22/232 (9%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 P+ L ILY+D+ ++V++KP GL+ P V + Sbjct: 89 QPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 53 -----DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 +A VHRLD TSGV+VV T++ +L QF++R K+Y+A V G Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 G ++ P+ +R K V + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 209 RGEINAPIGRSTHDRKKFTV-RQDGKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVH 267 Query: 168 MLALGHPILGDRFYASP-EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LG P+LGD Y S PR +LHA L+ HP+ + M F+AP Sbjct: 268 FRYLGFPLLGDAVYGSKGTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAPLP 319 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 ++ P E L I+Y+D I+V+NK +GL+ P V I Sbjct: 71 EDSGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTISGV 130 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSGV+V+A + R+L QF++R+ KK Y + G EG +D P Sbjct: 131 NRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDAP 190 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + D +R K V + K A T ++V+E+ D+ + V ++ TGR+HQ+RVH +G P Sbjct: 191 IGRDPHDRKKMAVTRKNSKKAVTYFKVLEFFRDH-SYVEVELKTGRTHQIRVHFSYMGFP 249 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y R A R LLHA L HP + +KA Sbjct: 250 VVGDSIYGKKRNRLQATRQLLHAYRLGFYHPRNDKWVEYKASLP 293 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQ 56 P+ L I+Y+DD ++VVNKP+GL+ P + + P+ Sbjct: 93 EENLAFVPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPR 152 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 A VHRLD TSG++VVA T A+ L Q +ER K+ Y A G G ++ + Sbjct: 153 AGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFD-GKIETQIG 211 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 D NR K V GKPA T +V+E + + + TGR+HQ+RVHM HP+ Sbjct: 212 RDPHNRLKMAVVKFGGKPAVTHVKVLERYLAH-SYIECSLETGRTHQIRVHMREANHPLA 270 Query: 177 GDRFYASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y +P +++ R LHA L+ THP G +++F+AP Sbjct: 271 GDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIP 322 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 10/216 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------YPQAESVHR 62 + L ++Y+D I V+NKP+G++ P V + R + VHR Sbjct: 87 EPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHR 146 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++V+A A R L Q + R +K Y A V G P P G +D P+ D +R Sbjct: 147 LDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRP-PETGTIDAPIGRDPRDR 205 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 + V G+PA+T Y +++ D + + ++ TGR+HQ+RVH+ LG+PI+GD Y Sbjct: 206 LRMAVV-PDGRPARTHYRLLDTFGD-YSLLEVQLETGRTHQIRVHLRHLGYPIVGDPVYG 263 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA L + HP G F AP Sbjct: 264 PRRSHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLP 299 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 16/225 (7%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAE 58 P+ + I+Y+D+ + V+NK +G++ P V + + Sbjct: 92 IKPENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGINGEIRPG 151 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++++A A +L + F ++ KK Y+A + G + G + + D Sbjct: 152 IVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIVTQIGRD 211 Query: 119 WPNRPKQKVCYE--TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V + +GK A T YEV+ + V + TGR+HQ+RVHM LG+PIL Sbjct: 212 KNDRKKMTVINDLNSGKTAITNYEVISQ-TEKFTLVKVHIETGRTHQIRVHMKHLGYPIL 270 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 GD Y + R +LHA L HP ++ F A P DF Sbjct: 271 GDSVYGRTDTE---KRQMLHAYKLEFQHPITEENLEFIAKLPEDF 312 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 107/242 (44%), Gaps = 33/242 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L ILY+DD I+V+NKP+GL+ P V + + V Sbjct: 86 ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIV 145 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD T+GV+VVA A ++L QF + K+ Y A VWG P P G+++ PL Sbjct: 146 HRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLG 205 Query: 117 CDWPNRPKQKV---CYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHML 169 NR ++ V +T A T Y+ +E N + + TGR+HQ+RVHM Sbjct: 206 RCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMA 265 Query: 170 ALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 G+P++GD Y A R LHA L+ +HP M F+ P Sbjct: 266 HKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVP 325 Query: 217 AD 218 Sbjct: 326 IP 327 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQ 56 + + + L IL++DDH+++++KP+GL+ PG H + + P+ Sbjct: 97 ENDQSHQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPR 156 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 A VHRLD T+G++VVA T A+ +L RQ ++R K+ Y+A V G G+VD P+ Sbjct: 157 AGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKD-GVVDAPIG 215 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R + V + GKPA+T Y V+E + + TGR+HQ+RVH+L++GHP+ Sbjct: 216 RHPIHRTRMAVV-QNGKPARTHYRVLEKFTAS-TLLHCSLETGRTHQIRVHLLSIGHPLA 273 Query: 177 GDRFYAS-------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y +A PR LHA L +THP G + +++P Sbjct: 274 GDPVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLP 322 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 322 bits (826), Expect = 6e-87, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 102/220 (46%), Gaps = 9/220 (4%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAE 58 P+ L + ++D ++VVNKP GL+ P V + + Sbjct: 74 IEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPG 133 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG+++VA AA L Q ++R ++Y A V G P G VD P+ Sbjct: 134 IVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRH 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R + V +G+ A+T Y VV D + + L TGR+HQ+RVHM +GHP++GD Sbjct: 194 PRDRQRMAVTPRSGRAARTHYRVVRRF-DKFSLLELTLDTGRTHQIRVHMAHVGHPLVGD 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y LHA L HP G + F+AP Sbjct: 253 LKYGHARPELGLEGQFLHAGTLGFRHPRTGEVLVFEAPLP 292 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 102/219 (46%), Gaps = 11/219 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 +E LY+D+ I+V+ KP GL+ P V + + VH Sbjct: 89 EEVEFTPLYEDEDILVLVKPPGLVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVH 148 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG +VVA A L +QF+ RE +K Y A + G + G V LP+ + Sbjct: 149 RLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVH 208 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V E G+ A T + V + + V L TGR+HQ+RVHM ALGHP+ GDR Y Sbjct: 209 RKKMAVRREGGREAVTHWRVRQRFSAGYTLVELLLETGRTHQIRVHMAALGHPLAGDRLY 268 Query: 182 ASPEAR---AMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 + R LHA L HP G +TF AP Sbjct: 269 GRNPEKDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAPL 307 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 112/227 (49%), Gaps = 13/227 (5%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQA 57 PQ+ +Y+DD ++V++KP G++ PG V + D + Sbjct: 87 SLEPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRP 146 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG +VVA + + R L F+ER+ K Y A V G P EG + P+ Sbjct: 147 GIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGR 206 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADN---TARVVLKPITGRSHQLRVHMLALGHP 174 +R K + TGK A T ++VVE + + + TGR+HQ+RVHM ++G P Sbjct: 207 HSVHRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGRTHQIRVHMSSIGCP 266 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 I GD+ Y S R +LHA L + HP G +M+F AP DF Sbjct: 267 IAGDQVYGSKRQNPAFARQMLHASRLRLPHPVTGRTMSFTAPLWQDF 313 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 22/232 (9%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 P++ L ILY+DD ++V++KP GL+ P V + Sbjct: 89 QPEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 53 -----DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 +A VHRLD TSGV+VV ++ +L QF++R K+Y+A V G Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 G ++ P+ +R K V + GKP+ T Y V+E +N + + + +TGR+HQ+RVH Sbjct: 209 RGEINAPIGRSTHDRKKFAV-RQDGKPSLTRYRVLETYHENYSLLEVTLLTGRTHQIRVH 267 Query: 168 MLALGHPILGDRFYASPE-ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LG P+LGD Y S PR +LHA L HP M F+AP Sbjct: 268 FRHLGFPLLGDAVYGSKGMENRNFPRQMLHAWKLAFQHPRSAAKMEFEAPLP 319 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 12/222 (5%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DYPQ 56 P+ L I+++DD ++VVNKPSG++ P + V + + + Sbjct: 73 IQPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYR 132 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++V+A ++L Q E + ++Y+A V GH + G+VD PL Sbjct: 133 PGLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLS 192 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 NR K+ V + GK A T +EV++ +D + V + TGR+HQ+R HM + HPI+ Sbjct: 193 RHQTNRLKR-VVEKGGKNAITHFEVLDSFSD-YSLVSCRLETGRTHQIRAHMEFIKHPIV 250 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y A LHA L+ THP G ++ F+ Sbjct: 251 NDPLYHPKGKNATEFGQFLHARTLSFTHPLTGETLNFQVEPP 292 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 318 bits (816), Expect = 9e-86, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR--IQRDYP--- 55 + P+ + ++Y+DD I+V +KP G+++ P EH V I+ D Sbjct: 75 VEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKAIRPDLQVQP 134 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSG++VVA T+AA L Q++ R K+Y A V G P G +D Sbjct: 135 SHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVEPDSGTIDA 194 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ D R K V G+PA T + V+E + + TGR+HQ+RVH +GH Sbjct: 195 PISRDPVERTKMAVVS-WGRPAITHFRVLERFRC-ATLLDVTIETGRTHQIRVHCAFIGH 252 Query: 174 PILGDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P++GD Y PR LHA L HP G ++ + P Sbjct: 253 PVVGDSQYGGHRPFCVPVPRQFLHARYLRFVHPTTGQAIELETPLP 298 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 25/236 (10%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAE 58 PQ+ L ++Y+D+ ++V++KP+G++ P + V + + Sbjct: 259 EPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIGGVKRPG 318 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D TSG++V A T AA R L QF ++ Y A VWG PSP +G ++ + + Sbjct: 319 IVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRN 378 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V GKPA T Y V++ A + V + TGR+HQ+RVHM GHP++G Sbjct: 379 PNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTTQGHPLVG 438 Query: 178 DRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 D Y A PR LHA +L +HP G + F++ P D Sbjct: 439 DPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGMPLD 494 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 13/224 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L I+Y+D I+V+NK G+++ P V + + V Sbjct: 74 PEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V+A A + L +QF++R +K Y+ V G P EG +++ + + Sbjct: 134 HRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPV 193 Query: 121 NRPKQKV-CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V E GKPA T Y+VV D A V P TGR+HQ+RVHM +GHP++GD Sbjct: 194 LRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIRVHMKYIGHPLMGDE 253 Query: 180 FYASPEARA--MAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y + R +LHA L+ HP G + F A P DF Sbjct: 254 VYGRAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDF 297 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 16/233 (6%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + E PQ L I+Y+D++++VVNKP ++ PG V + Sbjct: 78 IQSEITLIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNLSDGT 137 Query: 53 DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 Y + VHRLD TSG++VVA L + + R + Y+A V G S + +D Sbjct: 138 SYERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATID 197 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYA--ADNTARVVLKPITGRSHQLRVHMLA 170 LP+ D NR K V + GK A T+ E++ + + + TGR+HQ+RVH+ Sbjct: 198 LPIGRDPRNRKKMAVVH-GGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVHLSH 256 Query: 171 LGHPILGDRFYASPEAR-----AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LG+P+LGD Y + LH+ L THP + +M F+AP Sbjct: 257 LGYPLLGDPVYRGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPLP 309 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 19/230 (8%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQ 56 +N PQ+ L I+++D+H++VVNKP+G++ P V + + Sbjct: 74 HNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVAR 133 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++VVA T A L QF + ++Y A V GHPS +G VD PL Sbjct: 134 PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPS-LQGHVDAPLA 192 Query: 117 CDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 NR K + + GK A T Y ++ N + + + TGR+HQ+RVHM ++GH + Sbjct: 193 RSSVNRQKMAIVSDGRGKRAVTHYRMI-TPLKNASLIECRLETGRTHQVRVHMSSIGHSL 251 Query: 176 LGDRFYASPE-------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y + R LHA L HP G + F A Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMP 301 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 17/233 (7%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + ++ P+ L I+Y+D+ I+V+NKP+GL+ P + V + Sbjct: 68 VEEDSLPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTG 127 Query: 53 -DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 D+ + VHR+D TSG++VVA AA + L Q + ++ Y+A V G +G + Sbjct: 128 SDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTI 187 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + PL D NR + V E GK A T ++V+E +N + L+ TGR+HQ+RVH+ + Sbjct: 188 EAPLQRDPANRLRWTVAKE-GKYALTRFQVMENF-ENATLLDLELETGRTHQIRVHLEFI 245 Query: 172 GHPILGDRFY--ASPEARAMA----PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GHP++GD Y + LLHA L + HP G + FKAP Sbjct: 246 GHPLVGDPVYRKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLP 298 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 10/218 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 Q L ILY+D+ ++V+NK G++ PG V + D + V Sbjct: 76 QNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFHCGEQLRSVGDPERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGV+V A ++ A L+++ + ++ Y+A V G G++ LPL Sbjct: 136 HRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQMEGDTGVIRLPLGRSTK 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R K V +ETG+PA T + V+EY + + + K TGR+HQ+RVHM + H ++ D Sbjct: 196 DRMKWDVLHETGRPAVTHFHVIEYLP-HYSWIECKLETGRTHQIRVHMAHIRHAVVNDPL 254 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + LH+ L + HP G M F+AP Sbjct: 255 YGWKKDHFPIKGQALHSHTLELCHPITGEVMHFEAPVP 292 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 26/240 (10%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DYPQ 56 E P++ L ++Y+D +MVVNKP G++ PG + + + Sbjct: 122 EFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVKDLPLNADER 181 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++VVA T A L +QF ++ +++YVA VWG+ +G V + Sbjct: 182 PGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIG 241 Query: 117 CDWPNRPKQKV--CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 NR + V + GK A T Y+V+E V TGR+HQ+R HM +GH Sbjct: 242 RHPKNRLQMAVFPDGDQGKEAVTHYKVMERLG-YVTLVSCVLETGRTHQIRAHMKHIGHT 300 Query: 175 ILGDRFYASPE----------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + D Y + A PR LHA+ L HP+ G M F P Sbjct: 301 LFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGELMRFNTPIP 360 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 10/224 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 +E PQ+ + I+Y+D+ ++++NKP G++ P + V + R Sbjct: 68 VETEVKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGE 127 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + +HRLD T+G++++A + ++L Q + R ++ Y A G E ++ P Sbjct: 128 LRPGIIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAP 187 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + NR K + GK A T ++V+E + TGR+HQ+RVH+ LG P Sbjct: 188 IGRHPINRKKMAIV-PYGKIAITNFKVLERFK-GYTLISADLETGRTHQIRVHISHLGFP 245 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 I+GD Y + + LLHA+ ++ HP G M F+ Sbjct: 246 IVGDEVYGRIDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLP 289 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 109/244 (44%), Gaps = 35/244 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L ILY+DDH++V+NKP+GL+ PG V I + V Sbjct: 77 EAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGVV 136 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSGV+VVA A + L QF + ++Y A +WG P +D L Sbjct: 137 HRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLG 196 Query: 117 CDWPNRPKQKVCY---ETGKPAQTEYEVVEYAADNT------ARVVLKPITGRSHQLRVH 167 NR KQ V + + A T + ++E + + + + TGR+HQ+RVH Sbjct: 197 RSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASLLECRLETGRTHQIRVH 256 Query: 168 MLALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 M +GHP++GD Y + A R LHA LT HP+ G ++F Sbjct: 257 MAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVISFS 316 Query: 215 APAD 218 AP Sbjct: 317 APLP 320 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 311 bits (799), Expect = 8e-84, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 109/254 (42%), Gaps = 36/254 (14%) Query: 1 MGMENYNPP--QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------ 52 M P ++ L +LY+D ++V++KP+GL+ PG V I Sbjct: 75 MPEPEDPEPKGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLS 134 Query: 53 ---DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFRERE----PKKQYVARVWGHPS 105 + VHRLD TSGV+VVA A R L QF + ++ Y A VWG P Sbjct: 135 GIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPR 194 Query: 106 PAEGLVDLPLIC--DWPNRPKQKVCYETGKPAQTEYEVVEYAADN------TARVVLKPI 157 G +D L D R ++ + + A T Y+V+E + + V + Sbjct: 195 GLRGTIDAALGRAGDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCLASLVECRLE 254 Query: 158 TGRSHQLRVHMLALGHPILGDRFYA-------------SPEARAMAPRLLLHAEMLTITH 204 TGR+HQ+RVHM +GHP++GD Y + R LHA +L H Sbjct: 255 TGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEH 314 Query: 205 PAYGNSMTFKAPAD 218 P G+ M F AP Sbjct: 315 PTTGDVMHFAAPIP 328 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 100/230 (43%), Gaps = 21/230 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ LVILY+D H++V++KP G++ P V + + VH Sbjct: 77 EDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDLSGIGGELRPGIVH 136 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGV+V T +A + L QF+ ++Y+A + G + G +D P+ + Sbjct: 137 RLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRGSIDRPIGRHPTH 196 Query: 122 RPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K TG+ A T + V+ D V L TGR+HQ+RVH HP+LGD Sbjct: 197 RKKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQIRVHFSEQQHPLLGDPV 256 Query: 181 YASPEARAMAP------------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y R LHA +L HP G + F +P Sbjct: 257 YGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSSPLP 306 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 20/235 (8%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYP 55 + + + P+ L I+Y+D+ I+V+NKP G++ PG V + + Sbjct: 102 LEAQTNSQPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLYHSPKSAELS 161 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHR+D TSG++VVA A+ L +Q ++ + Y +G+ G +D P+ Sbjct: 162 RAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIAG-GTIDEPI 220 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R K + G+ A T Y V E D RV + TGR+HQ+RVH +GH + Sbjct: 221 KRHPVDRVKMAIL-PGGRDAVTHYNVKERFRD-FTRVQAQLETGRTHQIRVHFSYIGHGL 278 Query: 176 LGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD+ Y + E R LHA L + HP G M F+AP Sbjct: 279 VGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPWP 333 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 9/224 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------- 55 N ++ L I+YQDD ++V+NK + + P + V + D Sbjct: 84 DPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGE 143 Query: 56 -QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHR+D T+G+++VA + L F+ + K+Y+A V G P +GL+D P Sbjct: 144 LRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAP 203 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + +R K V + K A T +EVVE N + + TGR+HQ+RVH + HP Sbjct: 204 IGRSQTDRKKMSVTAKNSKHAITTFEVVERFLKN-TLIKCQIQTGRTHQIRVHFNYINHP 262 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +L D Y LHA L THP + +P Sbjct: 263 VLNDPIYGKKHQEFTDFGQYLHAYKLKFTHPITKKEIELISPLP 306 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 107/232 (46%), Gaps = 21/232 (9%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAE 58 PQ+ L ILY+D ++V++KP+GL+ P V + + Sbjct: 78 LIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPG 137 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++VVA T AA + L QF++ + K Y A V+G P G +DLP+ Sbjct: 138 IVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRH 197 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R K GK A T + + E + + +TGR+HQ+RVH+ A+GHP++GD Sbjct: 198 PVERKKMSTKSRRGKEAATRWRIAERFGV-ATLLNVDIVTGRTHQIRVHLAAIGHPVVGD 256 Query: 179 RFYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S R LHA L+ THP + F AP Sbjct: 257 AVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLP 308 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 310 bits (797), Expect = 1e-83, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YP 55 + + P++ L I+Y+DD ++V+NKP G++ PG V + P Sbjct: 168 LEQHGSDQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLP 227 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS--PAEGLVDL 113 +A VHR+D TSG++V+ TKAA+ EL+ Q +++ + Y V G + +D Sbjct: 228 RAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDA 287 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ R K V TGK A T + +D + + ++ TGR+HQ+RVH+ +GH Sbjct: 288 PIGRHRTQRTKMTV-TSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGH 346 Query: 174 PILGDRFYASPEARAM------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 PI+GD Y + + PR LHA L HP G S+ AP Sbjct: 347 PIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLP 403 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 106/229 (46%), Gaps = 21/229 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q+ L ILY+D I+ VNKP G++ P V + + VH Sbjct: 79 QDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQRPGIVH 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSGVI+ A AA L Q +R +K Y+A G G++DLPL + Sbjct: 139 RLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLARHPSD 198 Query: 122 RPKQKVCYE-TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R + V G+ A + + V E D V ++ TGR+HQ+RVH+ AL HP++GD Sbjct: 199 RKRMHVSTPAKGREALSLWTVKERFLD-ATYVKVQIKTGRTHQIRVHLAALHHPVIGDTV 257 Query: 181 YASPEARAMAP-----------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + R P R +LHA +++ THP G +T AP Sbjct: 258 YGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPLP 306 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 12/217 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ--------RDYPQAESVH 61 ++ L I++QD ++++NKP GL P + + D + VH Sbjct: 76 EDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDPLRPGIVH 135 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VA + L QF+ER +K Y+ V G PAEG ++ PL D N Sbjct: 136 RLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQN 195 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V G+ A+T Y+V+ Y + + +K TGR+HQ+RVH A+GHP+ GD Y Sbjct: 196 RQKIAVVS-NGRHARTGYKVLRYI-QGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAIY 253 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 E R LHA L+ T P+ G ++ F +P Sbjct: 254 GQKET--WLKRQFLHAHRLSFTLPSNGQTVEFTSPLP 288 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 11/225 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------D 53 E P+ + ILY+D I V++K +G++ P E V + Sbjct: 65 EKEIDLVPENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGING 124 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSG++++A A L F +K Y+A + G + G ++ Sbjct: 125 EIRPGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLET 184 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 + D +R K V GK A T ++V++ + + V + TGR+HQ+RVHM LG+ Sbjct: 185 LIGRDPKDRKKMAVVKTNGKTAITYFQVLDKN-EKFSLVKVNIQTGRTHQIRVHMKYLGY 243 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P+LGD Y +A R +LHA L HP +M + Sbjct: 244 PVLGDSVYGRD--NKIAGRQMLHAYKLEFLHPVTQKAMKIISELP 286 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQA 57 + P+ L I+++D ++V+NKP+GL+ P + + P+A Sbjct: 104 EDEAFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRA 163 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG++VVA T A +L RQ + R K++Y+A VWG P G +D + Sbjct: 164 GIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTP-NITGKIDASIGR 222 Query: 118 DWPNRPKQKVCYE-TGKPAQTEYEVVEY---AADNTARVVLKPITGRSHQLRVHMLALGH 173 +R K V T KPA T ++ + + ++ + TGR+HQ+RVHM ++G Sbjct: 223 HARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGF 282 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y + PR LHA L + HP G ++ + + Sbjct: 283 ALVGDGLYGKQHLTTVFPRQALHARRLGLIHPVSGEAVEWSSELP 327 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 28/243 (11%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------- 52 + P+E L IL++D+H++V+NKP+G++ PG H V + Sbjct: 76 EPSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGG 135 Query: 53 -----DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 + VHRLD TSG++V A A L RQF +R ++Y+A G P PA Sbjct: 136 LSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPA 195 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 +G ++ + +R K V + G+ A T Y+V+E A + + +GR+HQ+RVH Sbjct: 196 QGRIEGAIGRHPIHRTKMAVVEQGGRAAATRYKVLEPLGQ-FALIRCRLESGRTHQIRVH 254 Query: 168 MLALGHPILGDRFYA------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 M +GHP++GD Y + R LHA LT HP G M+FK Sbjct: 255 MTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKR 314 Query: 216 PAD 218 P Sbjct: 315 PPP 317 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 14/222 (6%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRL 63 P+E L I+++DD ++V++K +GL+ PG + + P+A VHRL Sbjct: 102 PEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIVHRL 161 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G++VVA T A+ +L RQ + R K+ Y A V G G+VD P+ R Sbjct: 162 DKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIV-EGAGIVDAPIGRHPTVRT 220 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + V G+PA+T Y V+E + TGR+HQ+RVHM ++ HP++GD Y Sbjct: 221 RMAVVS-GGRPARTHYRVLERFVA-CTLIECALETGRTHQIRVHMTSIAHPLVGDPIYGG 278 Query: 184 PEARAM----APRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 +R PR LHA L + HPA G +M +++ PAD Sbjct: 279 GASRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADM 320 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 11/223 (4%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQA 57 Y PQ L +L++D+HI+V+NK +GL P + V + + Sbjct: 98 YLKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRP 157 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG IVVA ++ A +L+ Q ++R ++Y A V G P G + + Sbjct: 158 GIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVGR 217 Query: 118 DWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V E+G+ A+T + ++E D + + K TGR+HQ+RVH + HP++ Sbjct: 218 HPVDRKKYAVVSDESGRYARTHWTLIERFGD-YSLLRFKLDTGRTHQIRVHCAHINHPVV 276 Query: 177 GDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y+ + P LHA L + HP G M F+AP Sbjct: 277 GDPTYSRCRKLPLDLPGQALHAVQLGLDHPITGERMVFEAPLP 319 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 110/226 (48%), Gaps = 12/226 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------- 52 N P+ L I+Y+DD IMV+NKP GL+ P V + Sbjct: 64 EETNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHND 123 Query: 53 DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 D + +HR+D TSG+I+VA T A + L + + + K++Y+A V G +G++D Sbjct: 124 DPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVID 183 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ R K V TGKPA T +EV+ D+ + K TGR+HQ+RVH+ + Sbjct: 184 APIARHPKIRTKMAVV-ATGKPAITHFEVMRTFRDH-TLLHCKLETGRTHQIRVHLAYIK 241 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP+ GD Y + A+ + LLHA L HP M +AP Sbjct: 242 HPVTGDPLYGTK-AKILKDGQLLHAFRLEFVHPITKKVMMLEAPLP 286 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 109/243 (44%), Gaps = 29/243 (11%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DY 54 E P+E + ++Y+DD +MVVNK +G++ PG H + + Sbjct: 121 ETSIKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEFDAND 180 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 P+ VHR+D TSG++VVA T A+ L +QF + + Y A VWG+ EG ++ Sbjct: 181 PEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGRIEGN 240 Query: 115 LICDWPNRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 + D NR + KV GK A T Y+V+E T V TGR+HQ+R HM + Sbjct: 241 IGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFG-YTTLVQCVLETGRTHQIRAHMKHI 299 Query: 172 GHPILGDRFYASPEARA----------------MAPRLLLHAEMLTITHPAYGNSMTFKA 215 GHP+ D Y E + PR LHA+ L HP M F + Sbjct: 300 GHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMDFDS 359 Query: 216 PAD 218 Sbjct: 360 EWP 362 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 114/245 (46%), Gaps = 32/245 (13%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--------- 54 +N PP++ + I+Y+DD I ++NKPS ++ PG+ + +Q + Sbjct: 83 DNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGT-LAGALQYHFDQLSDVAGQ 141 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG++VVA +L QF +R+ +K+Y A VWG +D Sbjct: 142 YRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTF 201 Query: 115 LICDWPNRPKQKVCYETG--KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 + R K VC E G + A T YEV+E V LKP TGR+HQLRVHM +G Sbjct: 202 MCVHPRAREKMIVCDEGGNARNAFTYYEVIERY-QAFTYVRLKPRTGRTHQLRVHMQHIG 260 Query: 173 HPILGDRFYASPEARA-------------------MAPRLLLHAEMLTITHPAYGNSMTF 213 H I+ DR Y ++ + R LHA L HP G M F Sbjct: 261 HSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPMKF 320 Query: 214 KAPAD 218 +AP Sbjct: 321 EAPLP 325 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 11/220 (5%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHR 62 P++ L ++Y+D+H++VVNKP+GL+ P + + RD P+A VHR Sbjct: 119 QPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHR 178 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP-AEGLVDLPLICDWPN 121 LD TSG++VVA ++AA L R+ +QY+A P VD P+ D N Sbjct: 179 LDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHREVDAPIGRDPRN 238 Query: 122 RPKQKVCY---ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R + V GK A+T+ +++ + + V TGR+HQ+RVHM +LGHP++ D Sbjct: 239 RLRMAVVDLAQHAGKTARTDIDLLA-GNEEVSLVRCTLHTGRTHQIRVHMASLGHPLVAD 297 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y EA MA R LHA L THP G ++ +AP Sbjct: 298 AVYGGKEAGGMA-RQALHAFRLAFTHPMTGQALVLRAPLP 336 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 106/256 (41%), Gaps = 52/256 (20%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------------- 52 L I+Y+D +++VVNK +GL+ P R V + Sbjct: 86 LDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDLPEDDEIG 145 Query: 53 -------------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVAR 99 + P+ VHRLD T+G+IVVA L RQF R + Y+A Sbjct: 146 LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTIARTYLAI 205 Query: 100 VWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARVVLKPIT 158 VWG P P G ++ + D +R + V + GK A T YEVVE A V K T Sbjct: 206 VWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVEALPA-AALVRFKLET 264 Query: 159 GRSHQLRVHMLALGHPILGDRFYASPEARAM----------------APRLLLHAEMLTI 202 GR+HQ+RVH +GHP+LGD Y R R LHA L Sbjct: 265 GRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFARLTRQALHAHTLGF 324 Query: 203 THPAYGNSMTFKAPAD 218 HP G + F+AP Sbjct: 325 RHPRTGEWLEFEAPLP 340 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 +E P+ L I Y+DD + +V KP G++ P V + + Sbjct: 70 VEADIQPENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGE 129 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHR+D TSG+++VA A R L Q + ++YVA V G G VD P Sbjct: 130 IRPGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAP 189 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + + +R V + GK A T + V+E+ + + + TGR+HQ+RVHM +G+P Sbjct: 190 IGRNKNDRQSMDVV-DDGKEAVTHFNVLEHF-NKYTLIECQLETGRTHQIRVHMKYIGYP 247 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y + LHA ++ HP + Sbjct: 248 LVGDPKYGPKKTLD-IGGQALHAGIIGFEHPVTHEYIEKSTALP 290 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 114/248 (45%), Gaps = 35/248 (14%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQ 56 Y + L IL++DDHI+VVNKP+GL+ PG V I + Sbjct: 72 YPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIGGVRR 131 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVD 112 VHRLD TSGVIVVA A + L QF + ++Y A +WG P+ G++ Sbjct: 132 PGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNIGVIT 191 Query: 113 LPLICDWPNRPKQKVCYET---GKPAQTEYEVVEYAADNT------ARVVLKPITGRSHQ 163 L +R KQ V + + A T + V+E + + + TGR+HQ Sbjct: 192 ASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLLECRLETGRTHQ 251 Query: 164 LRVHMLALGHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNS 210 +RVHM +GHP++GD Y + EA + R LHA LT HPA GN Sbjct: 252 IRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHPAKGNI 311 Query: 211 MTFKAPAD 218 M+F AP Sbjct: 312 MSFSAPLP 319 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 14/220 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRLD 64 ++ L I+++DD I+V++KP ++ PG + R P+A VHRLD Sbjct: 84 EDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLD 143 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++V A + A L +Q ER+ ++Y+A V G +G ++ P+ D NR K Sbjct: 144 KDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQ-QGTINQPIGRDPTNRTK 202 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + Y GK A T Y +E D + + TGR+HQ+RVHM ++ HP++GD+ Y Sbjct: 203 MAINYR-GKEAITYYTPIEVY-DGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNKS 260 Query: 185 EAR------AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + + R LHA L+ HP + FK+ Sbjct: 261 STKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLP 300 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 16/224 (7%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DYPQ 56 P++ L ILY+D+H++++NKP G++ P V + D + Sbjct: 80 LIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSDASVDSIR 139 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSGV+V A T + +++L F R+ K+Y A G+P E ++ P+ Sbjct: 140 PGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGNPGNCE--LNWPIG 197 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R + V E GK A T E +E + L TGR+HQ+RVH+ GHPIL Sbjct: 198 RHPIHRKQMTV-REDGKEALTFCETLE-VGNEICLAKLILSTGRTHQIRVHLKHKGHPIL 255 Query: 177 GDRFYASPEA--RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y S + R A R +LHA L HP + +AP Sbjct: 256 GDSIYGSKQVNMRYRAERQMLHARKLAFIHPITQQKIEVEAPLP 299 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 104/240 (43%), Gaps = 29/240 (12%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------Q 56 P++ + ILY+DD +MV++K +G++ P + + Sbjct: 70 LAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMR 129 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG+I++A A +L RQF R+ +K Y A VWG P G + + Sbjct: 130 PGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIG 189 Query: 117 CDWPNRPKQK---VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 NR GK A T+Y+VVE + + + TGR+HQ+RVH+ LGH Sbjct: 190 RSHKNRKVMANFPYEGAEGKHAITDYQVVEDLG-YFSLMDVTLHTGRTHQIRVHLQHLGH 248 Query: 174 PILGDRFYASPEAR---------------AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ILGD Y R + R LHA+ L P G ++F AP Sbjct: 249 SILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSAPLP 308 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 110/234 (47%), Gaps = 17/234 (7%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------- 54 E+ P++ L I+Y+DD I+VVNKP+G++ PG V + RD Sbjct: 78 ADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTFSAMD 137 Query: 55 ---PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 + VHRLD TSGVI+VA + +L R F R+ +K YVA G + Sbjct: 138 DGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTI 197 Query: 112 DLPLICDWPNRPKQ--KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML 169 + NR K GK A + Y+V+ + V LK TGR+HQ+RVHM Sbjct: 198 TSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLA-DNNGATLVKLKIDTGRTHQIRVHMS 256 Query: 170 ALGHPILGDRFYASP--EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA--DF 219 + HP++GD+ Y + + R +LHA I HP MTF AP DF Sbjct: 257 GINHPVVGDKLYGVRRLDEKESPDRHILHAWRTRIIHPGTQEIMTFTAPLHDDF 310 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 12/220 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q L ILY+D+ ++++NKP+GL+ PG V + + VH Sbjct: 94 QNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVH 153 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G +VVA T+ A L+ Q +E+ ++ Y V+G P +G V+LP+ + Sbjct: 154 RLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGD 213 Query: 122 RPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K + + G+ A T + ++E ++ + + + TGR+HQ+RVH +GHP++GD Sbjct: 214 RQKMGIVPVEKGGREAVTHWRLLERIGNH-SWLEFQLETGRTHQIRVHSKQMGHPLVGDN 272 Query: 180 FY-ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + P LHA L++ HP G +T AP Sbjct: 273 LYTSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMP 312 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 11/223 (4%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQA 57 Y P+ L +L++D+H++V+NKP+GL P + V + + Sbjct: 80 YLQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRP 139 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD T+G IV+A ++ A +L+ Q ++R ++Y+A V G P+ G + + Sbjct: 140 GIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIGR 199 Query: 118 DWPNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V + G+ A T + + E D + + K TGR+HQ+RVH HP++ Sbjct: 200 HPVDRKKYAVVSSDNGRYACTHWSLQERLGD-YSLLRFKLDTGRTHQIRVHCAHRNHPVV 258 Query: 177 GDRFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y+ + P LHA L + HP G M F+AP Sbjct: 259 GDPTYSRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLP 301 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 25/233 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESV 60 P+E L +LY+D H++V+NKP+GL P ++ R+ +P + V Sbjct: 114 PEEGELEVLYRDAHMLVINKPAGLTVHPAPSCPEGT-LVHRLLHHFPELEAQEGFRPGIV 172 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++++ALT+ A L F R K+Y+A V G P G +D P+ Sbjct: 173 HRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIPEGDSGEIDAPVGRHPT 232 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYA-----ADNTARVVLKPITGRSHQLRVHMLALGHPI 175 ++ + V G+ A + + V+ V ++ TGR+HQ+RVHM GHP+ Sbjct: 233 HKTRMAVVR-GGREALSTWRVLLADPHGGGGTGWTLVAVRIHTGRTHQIRVHMQHTGHPL 291 Query: 176 LGDRFYASPEARAMAP----------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y R R +LHA ++ HP G M F P Sbjct: 292 WGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVTGAPMQFTLPPP 344 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 21/223 (9%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRLD 64 Q+ L I+Y+DDHI+VVNKP+G++ P + + D P+A VHRLD Sbjct: 86 QDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLHDVPRAGIVHRLD 145 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++VVA T A+ L RQ + R K++Y A VWG G+VD PL D +R K Sbjct: 146 KETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQL-WRNGVVDQPLGRDPRSRTK 204 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS- 183 + GKPA T YE++E + + TGR+HQ+RVHM L P++GD Y Sbjct: 205 MAINR-MGKPAITRYEILERFSVQ-TYLRCNLETGRTHQIRVHMQHLKAPLVGDPVYGFR 262 Query: 184 ------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 +A + R LHA L + HPA M ++ Sbjct: 263 GIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQ 305 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 120/239 (50%), Gaps = 22/239 (9%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 P+E L I+Y D I V+NKP+GL + P ++ R+ +P Sbjct: 82 AELTSLVPEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTGT-LVHRMIHHFPEIRDMD 140 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSG+I VAL + + F +RE K Y+A V G P G +D Sbjct: 141 EWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREFGEIDQ 200 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEY-AADNTARVVLKPITGRSHQLRVHMLALG 172 P+ ++ K V + G+ A++EYEV+ A + V +K TGR+HQ+RVHM +G Sbjct: 201 PMGRHPVHKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQIRVHMAHIG 260 Query: 173 HPILGDRFYAS----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK-APA-DF 219 HP++GD+ Y S P+ +A R +LHA L+ THP ++F AP DF Sbjct: 261 HPLVGDQVYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFTQAPPEDF 319 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 13/222 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 PQE L I+Y+D H++VVNKP G++ P V + + Sbjct: 75 PQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKGSLSGIGGEIRPGI 134 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHR+D TSG++VVA A L +Q ++ Y V+G + EG V+ L Sbjct: 135 VHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGRSK 194 Query: 120 PNRPKQKV---CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 +R K V K A T Y+V+E + + + TGR+HQ+RVHM ++ HP+ Sbjct: 195 TDRKKMAVYPASEPHTKYAYTGYKVLERLGE-FTMLECRLKTGRTHQIRVHMASIHHPVA 253 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y LHA+ L HP G + F + Sbjct: 254 GDPVYGPHNCITSLHGQCLHAKTLGFIHPITGEHLRFDSELP 295 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 103/241 (42%), Gaps = 32/241 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 Q L I+Y+D ++VV KP+GL+ P V + + V Sbjct: 222 QAIPLEIVYEDADLIVVMKPAGLVVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIV 281 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD TSG++VVA T A + L QF + + Y A WG P +G VD + Sbjct: 282 HRLDKETSGLMVVAKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIA 341 Query: 117 CDWPNRPKQKVCYE-----TGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLA 170 NR K + G+ A T Y V AD A V + TGR+HQ+RVHM A Sbjct: 342 RSSHNRSKMATVRDRGEETGGRIAITHYTVKTDYADGLVAEVECRLETGRTHQIRVHMTA 401 Query: 171 LGHPILGDRFYASP-------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 LGHP+LGD Y + A R LHA L HP G M+F AP Sbjct: 402 LGHPLLGDATYGTGMKSRKSKLSPEAQAALERLNRQALHAHHLGFEHPVAGEKMSFDAPL 461 Query: 218 D 218 Sbjct: 462 P 462 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 111/235 (47%), Gaps = 20/235 (8%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YP 55 + E PQ+ L I+Y+D+ I+V+NKP L+ PG + + P Sbjct: 71 IEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHRLD T+G++VVA T A+ L + RE ++Y A GH + G VD P+ Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 R V + GKPA T Y ++E+ + R+ L+ TGR+HQ+RVHM + HP+ Sbjct: 190 SRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVH-TRLRLRLETGRTHQIRVHMAHITHPL 247 Query: 176 LGDRFYASPE------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y R LHA ML + HP G M + AP Sbjct: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 >UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K915_VIBPA Length = 254 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 125/219 (57%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M YNPP+EPW+ I+++D+HI+V NKPSGLLSVPGRLEEH DS+ +R+ YP + V Sbjct: 10 MAMTEYNPPREPWVDIVFEDEHILVANKPSGLLSVPGRLEEHYDSLWSRLVAIYPDIQVV 69 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM TSG++++A K AER LK+QF+ R K Y ARVWGHP+ G +DLPLICDWP Sbjct: 70 HRLDMDTSGLMLLAKHKEAERSLKKQFQYRLTHKVYYARVWGHPTNDNGEIDLPLICDWP 129 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRP+Q VC++ GKP++T Y+VV+ + T+ V L PITGRSHQLRVHM ALGHPI+GD F Sbjct: 130 NRPRQIVCFDDGKPSKTLYQVVKR-EERTSIVRLLPITGRSHQLRVHMQALGHPIVGDEF 188 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y+ EA + RL LHA L+ HP P DF Sbjct: 189 YSEGEAFEFSDRLELHAAELSFYHPHSEALQCAFVPCDF 227 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 107/226 (47%), Gaps = 12/226 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------- 53 E PQ+ ++YQD ++VV+KP+GL+ P V + R Sbjct: 84 SEELELEPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDLMELNG 143 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSG++VVA A L R F++R K Y+A G EG V L Sbjct: 144 VKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLR-GEGSVSL 202 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ D NR + G+ A T Y V+ + + V + TGR+HQ+RVHM +LGH Sbjct: 203 PIGRDPDNRKRMACV-PWGREALTRYRVIW-SRGGYSLVACQIKTGRTHQIRVHMRSLGH 260 Query: 174 PILGDRFYASP-EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P++GDR Y P R+ LH+ L HP G M+F P Sbjct: 261 PLVGDRIYGGPCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLP 306 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 25/235 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 P+ L ILY+D+ ++V+NKP GL+ PG V + P+A VHR+ Sbjct: 138 PENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRI 197 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP--AEGLVDLPLICDWPN 121 D TSG++V+A ++ L Q +++ + Y A V + +D P+ Sbjct: 198 DKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQ 257 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V GKPA T E + +D + V ++ TGR+HQ+RVH+ LG P+LGD Y Sbjct: 258 RTKMAVVSS-GKPAVTHLEKITAISDAVSLVSVRLETGRTHQIRVHLSNLGFPLLGDPLY 316 Query: 182 ASPEARAMA---------------PRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + A+ R LHA L HP G + +A P D Sbjct: 317 GAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPEDM 371 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 25/243 (10%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + P++ L I+++D I++++KP G++ PG V + Sbjct: 68 IEETINLIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLSGM 127 Query: 53 -DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 + VHR+D TSG++VVA A + +QF E K+ Y+ V+G P G + Sbjct: 128 NGEDRPGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHGKI 187 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVH 167 + + + NR K GK A T YE +E N + V TGR+HQ+RVH Sbjct: 188 ETLIGRNKTNRQKMSADVIRGKDAITNYETLEVFKGNKIPDISLVKCILETGRTHQIRVH 247 Query: 168 MLALGHPILGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 M G+PILGD+ Y E R LHA L HP + F + Sbjct: 248 MSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFFAS 307 Query: 216 PAD 218 Sbjct: 308 ELP 310 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 109/228 (47%), Gaps = 20/228 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 + L +LY D + V++KP GL P ++ R+ +P + VH Sbjct: 87 EAGSLRVLYADKELAVLDKPPGLTVHPAPGLPEGT-LVNRLLHHFPGLREMAGERPGIVH 145 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VALT+ L F R+ K Y+A V G P G + LP+ D Sbjct: 146 RLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRDPKY 205 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K V ++ G+PA + + V A D T + + + TGR+HQ+RVHM A+GHPI+GD Sbjct: 206 RTKMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMAAIGHPIIGDAV 265 Query: 181 YA----------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A R +LHA L+ THP +F P Sbjct: 266 YGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPP 313 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 21/236 (8%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQA 57 EN + L ++Y+DD ++V+NKP+GL+ P + + R P+A Sbjct: 105 DENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRA 164 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG++VVA T A+ +L RQ + R K+ Y+A VWG +P G +D P+ Sbjct: 165 GIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE-TPEAGTIDAPIGR 223 Query: 118 DWPNRPKQKVC-YETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGH 173 D +R + + +GKPA+T ++ ++ + V + TGR+HQ+RVH + GH Sbjct: 224 DPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGH 283 Query: 174 PILGDRFY------ASPEA-----RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P+LGD Y P+ A R LHA L + HPA G S+ + A Sbjct: 284 PLLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHAGVP 339 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 40/250 (16%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P+ L ++++D ++V++KP G++ P + V + + Sbjct: 85 PEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHCGASLSGIGGEKRPGI 144 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA----EG------ 109 VHR+D TSG++VVA T A + L QF +++Y+A V G P P+ G Sbjct: 145 VHRIDKDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVPEPSDPRLRGIRGVSF 204 Query: 110 ------LVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN--TARVVLKPITGRS 161 + + +R +Q V +E G+ A T ++E A V + TGR+ Sbjct: 205 EPGGVLRIATGIARHRTDRQRQAVTFEGGRHAVTRARLLERFGTPPAAALVECRLETGRT 264 Query: 162 HQLRVHMLALGHPILGDRFYASPE-------------ARAMAPRLLLHAEMLTITHPAYG 208 HQ+RVHM +GH ++GD+ Y A PR LHA L HP G Sbjct: 265 HQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQALHAATLGFCHPVTG 324 Query: 209 NSMTFKAPAD 218 ++F++P Sbjct: 325 EDLSFESPLP 334 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 11/213 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ ++Y+D++I V++KP L+ G V + + D + VH Sbjct: 71 EKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSDLDPLRPGIVH 130 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++++A A L QF+ + KK Y+A V G +P G++ P+ + + Sbjct: 131 RLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGK-TPESGIIAEPIGRNPND 189 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V Y+ K A T+Y+ ++ + + + + +TGR+HQ+RVHM +G+P+LGD Y Sbjct: 190 RKKMAVVYKNSKQAITKYKKLKEFQE-YSLLNINLLTGRTHQIRVHMAYIGYPVLGDIIY 248 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 + + +LH+ L HP M F Sbjct: 249 GRKNSLK-IDKQMLHSYKLIFNHPITNQKMEFT 280 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 20/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ+ L ILY+D+H+ V+NKP+GL+ PG V + RD P+A VHRL Sbjct: 85 PQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRL 144 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSGV+VVA T A+ L Q R+ +QY+A V G V+ + +R Sbjct: 145 DKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSG-GTVNAAIERHPRDRL 203 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + +V +TGK A T Y + E +TA + TGR+HQ+RVHM L HPI+GDR Y Sbjct: 204 RMEV-SDTGKEAVTHYRLRERFRAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRLYGG 261 Query: 184 P------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHAE+L HP + AP Sbjct: 262 SLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVP 308 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 52/262 (19%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P++ L +L++D+H++++NKP+GL+ P V + + Sbjct: 93 PEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVARPGI 152 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSGV+V A T+ A L F+ ++ Y+A G P P G ++ + Sbjct: 153 VHRLDKDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRPLLGKIETRIARST 212 Query: 120 PNRPKQKVCYE-------------------TGKPAQTEYEVVEYAAD--------NTARV 152 +R K V E GK A T Y+V+E Sbjct: 213 TDRKKMAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGRIDATSGLPAATLT 272 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYAS----------------PEARAMAPRLLLH 196 + TGR+HQ+RVHM +G P+LGD+ Y A R LH Sbjct: 273 ECRLETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETATHACKEFKRQALH 332 Query: 197 AEMLTITHPAYGNSMTFKAPAD 218 A +L HP G ++ F+ Sbjct: 333 AAILGFEHPVTGENLRFEVEPP 354 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 12/222 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------Q 56 P V+ Y+DD ++VV+KP G++ PG V + R P + Sbjct: 80 ELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGLLARGTPLCTLAGALR 139 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHR+D TSG++V A + A R L FR + +++YVA G EG +D+P+ Sbjct: 140 PGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAHGRMPHREGTIDMPIA 199 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 D +R + V + GK A T +EV+E A + + L+ TGR+HQ+RVH+ A+GHPI Sbjct: 200 RDPADRQRMAV-RQGGKRAVTHFEVLESFA-KYSYLRLRLETGRTHQIRVHLAAIGHPIA 257 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y LHA L THP G + F++ Sbjct: 258 GDPVYGPRHT-LPIDGQALHARTLGFTHP-DGRRLRFESAVP 297 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 100/229 (43%), Gaps = 22/229 (9%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESVHR 62 L ILY+D H++VV+K +G+ P + V + + VHR Sbjct: 101 LPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHR 160 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSGV+V A + AA R L F + + YVA G P+P G + + +R Sbjct: 161 LDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNPPTGTIQTQIGRSPGDR 220 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLALGHPILGD 178 K V G+ A T Y V ARV + TGR+HQ+RVHM + G P LGD Sbjct: 221 KKMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTHQIRVHMASKGSPCLGD 280 Query: 179 RFYASPE---------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + A R LHA +L HP G ++ F+ P Sbjct: 281 PVYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGETLRFETPLP 329 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 299 bits (767), Expect = 4e-80, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 12/220 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 ++ L ILY+D+ ++++NKP+GL+ P V + + VH Sbjct: 95 EDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGIVH 154 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+G I +A T A + L+ Q + + +++Y+ V+G P G+++LP+ + Sbjct: 155 RLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHPQD 214 Query: 122 RPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K + + G+ A T +++ E N + + TGR+HQ+RVH +GHPI+GD Sbjct: 215 RKKMAIVPTEQGGRTAITHWQIRERL-SNYTLIHFQLETGRTHQIRVHSAKIGHPIVGDS 273 Query: 180 FYA-SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y LHA L + HP G+ + A Sbjct: 274 VYGAGRSVGVNLAGHALHAWQLKLQHPISGDWIQVTASPP 313 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 14/228 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 + + P+E +L IL+ D+H+ ++NKP GL P + +++ R+ + +P Sbjct: 71 EVVSALLPEEGFLEILFSDEHLAIINKPPGLTVHPAPS-CQESTLVHRLLKYFPKLIEQG 129 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHR+D TSG++ +ALT+ +L + F +R+ K+Y+A V G PS EG + + Sbjct: 130 GLRPGIVHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPS-MEGYIAV 188 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALG 172 PL D + K V GKPA TE+ V+ ++ + + L TGR+HQ+RVHM +G Sbjct: 189 PLGRDPKTKVKVAV-NPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMKHIG 247 Query: 173 HPILGDRFYASPEARAMA--PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP++GD+ YA R +LHA L+ HP G M F P Sbjct: 248 HPLVGDKLYAGGHVNKTFQCNRQMLHAWKLSFEHPITGKKMNFLCPPP 295 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 10/223 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 E P++ L I+Y+D+ I+VVNKP G++ P + + + + + Sbjct: 71 KEEQDIIPEKMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLNGT-LSNGVLYYFNDKNENS 129 Query: 57 -AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 V+RLDM TSG++++A + L R ++ + K+Y+A V G+ + G++D P+ Sbjct: 130 IVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 K+ + E G+ + T ++V+E N + V L TGR+HQ+RVH+ ++GHPI Sbjct: 190 YRVGEGTLKRIID-ERGQRSITLFKVIEQYK-NASLVELTLETGRTHQIRVHLSSIGHPI 247 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y E R LHA L I HP G + ++ Sbjct: 248 YGDSLYG-EEEPQYIDRQALHAYKLQIPHPKDGKILKLESSLP 289 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 21/237 (8%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 E L I+Y+DD ++V+NK +G+ PG V + Sbjct: 68 EELKIAAVNIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSA 127 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD T+G++VVA A L Q +R+ ++Y A VWG +P G++ Sbjct: 128 ARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLAGVIKNN 187 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGH 173 + R K + GK A T Y+ +E T + V + TGR+HQ+RV + + H Sbjct: 188 IGRSRVERQKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLNTGRTHQIRVQLSHVKH 247 Query: 174 PILGDRFYASPEARAM------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD+ Y + + + R LH+ L+ THP M F Sbjct: 248 SVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSCELP 304 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 20/235 (8%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YP 55 + PQ+ L I+Y+DD I+V+NK ++ P V + D P Sbjct: 68 IEEAVAAVPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVP 127 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHRLD TSGV+VVA T AA + L R+ +++Y V GH G VD P+ Sbjct: 128 RAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAG-GTVDAPI 186 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R +Q V TGK A T Y V+++ + + ++ TGR+HQ+RVHM + HP+ Sbjct: 187 GRHPRDRQRQAV-TATGKRAVTHYRVLQHYGEQ-TWLRVQLETGRTHQIRVHMAHIRHPV 244 Query: 176 LGDRFYASPEARAM------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y R LHA LT+ HP G M F+AP Sbjct: 245 IGDPVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMP 299 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 29/239 (12%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD----SVMTRIQRDYP--------- 55 P++ L ++Y+DD + V+NKP+G++ G ++ +++ + + Sbjct: 77 PEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDM 136 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG+IVVA A R+L QF R K+YVA V G P +G ++LP+ Sbjct: 137 RPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPI 196 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALG 172 D R + G+ A + YEV +E A V +K TGR+HQ+RVHM +LG Sbjct: 197 ARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEVKIETGRTHQIRVHMASLG 256 Query: 173 HPILGDRFYASPEARAM-------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP++GD Y +P + R LHA + + PA G ++ F Sbjct: 257 HPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTKVP 315 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 29/245 (11%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------- 52 + P++ L I+Y+DD I+V+NKP L+ PG + Sbjct: 66 KESSTLEPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKENLSTVN 125 Query: 53 DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 + VHRLD T G++VVA AA R L Q R + Y A VWG P EG +D Sbjct: 126 GPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRDLEGTID 185 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ + NR K V + GK ++T Y V + + L+ +GR+HQ+RVH G Sbjct: 186 APIGRNPKNRLKMAVV-KGGKESRTHY-VAKQFFAIATLLELQLESGRTHQIRVHSRYTG 243 Query: 173 HPILGDRFYASPEA----------------RAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 HP++GD Y + +AP LL A + + HP +TFK P Sbjct: 244 HPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLTFKVP 303 Query: 217 A--DF 219 F Sbjct: 304 MEEPF 308 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 11/226 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-------- 53 + P L I+Y+DD I+VVNKP GL+ P ++ +++ + Sbjct: 71 EEQISIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLN 130 Query: 54 -YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 + VHR+D T+G++VVA T A L ++R ++YVA V VD Sbjct: 131 GELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSATVD 190 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ D NR + V + K A T + + E D + + K TGR+HQ+RVH + Sbjct: 191 APIGRDPKNRQRMAVTDQNSKQAVTHFYLAERFND-FSVLRCKLDTGRTHQIRVHAQYIK 249 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HPI+GD+ Y S + LHA+ LT+THP MTF+A Sbjct: 250 HPIVGDQTY-SYKNTWETNGQCLHAQKLTLTHPVSKEVMTFEAELP 294 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 16/232 (6%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----- 55 + PQ + ++Y+DD+++V++KP+G++ P + Sbjct: 69 LENSEKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAYHVKKLANVG 128 Query: 56 ---QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 + VHRLD TSGV+VVAL +L F++RE KK+Y+A V+G G + Sbjct: 129 APFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLR-GSGKIT 187 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ +R K + + K A TE+EV++ N + +K +TGR+HQ+RVH ++G Sbjct: 188 TPVGRAIYDRKKMSIKSKKAKEAITEWEVIKNFK-NYTFLKVKILTGRTHQIRVHFSSIG 246 Query: 173 HPILGDRFYASPE------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP++GD+ Y + R +LHA + + HP + F+A Sbjct: 247 HPVIGDKTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASLP 298 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 17/232 (7%) Query: 1 MGMENYNPP------QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-- 52 + +E +PP ++ L ILY+D ++ ++KP+G++ G V + R Sbjct: 58 VEVEPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFA 117 Query: 53 ------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 106 + VHRLD TSGV++VA AA ++L QF RE +K Y+A V G P Sbjct: 118 TLSGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKP 177 Query: 107 AEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRV 166 G ++ P+ D +R + G+ A +EY V+ D + ++ TGR+HQ+RV Sbjct: 178 ETGRIERPIARDPVHRARMTARLAEGRAAWSEYRVLRRFPD-FTLLEVRIGTGRTHQIRV 236 Query: 167 HMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 H+ ++ HP++GD Y +P A+ + R LHA + P G M ++P Sbjct: 237 HLASIRHPVVGDTLYGAP-AQPLLGRYFLHAHRIRFHLP-SGREMLIESPLP 286 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 12/219 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 Q+ ++Y+DD ++VVNKP+G++ PG V + R + VH Sbjct: 112 QDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLMFRYPEIGRIGDSVRPGIVH 171 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD+ TSG++VVA + AA R L F+ E K+Y+ G EG VD P+ D N Sbjct: 172 RLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVDAPIGRDPRN 231 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K V + G+ A T+Y+V+ + ++ TGR+HQ+RVHM ALG + GD Y Sbjct: 232 RLKMCVSW-DGRDAVTDYKVLWT-RARCNLIRVRLHTGRTHQIRVHMRALGCSLDGDTLY 289 Query: 182 ASPEARAMA--PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R+ LH+ L HP G + F+AP Sbjct: 290 GPKDPAQHILKDRVFLHSWRLGFRHPVSGERLEFRAPLP 328 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 40/251 (15%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAE 58 P++ L ++++D ++VV+KP G++ P V + + Sbjct: 93 QPEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHCGDTLSGVGGAKRPG 152 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA-------EGL- 110 VHR+D TSG++VVA T A L QF + Y+A V G P+ A G+ Sbjct: 153 IVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAPNAADPRLRGIRGVS 212 Query: 111 --------VDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN--TARVVLKPITGR 160 + L +R +Q V +++G+ A T V+E A V TGR Sbjct: 213 FEPGGIVCIATNLARHKTDRQRQAVLFDSGRHAVTRVRVLESYGTPPVAALVECWLETGR 272 Query: 161 SHQLRVHMLALGHPILGDRFYASPEARAM-------------APRLLLHAEMLTITHPAY 207 +HQ+RVHM GH +LGD+ Y A PR LHA L HP Sbjct: 273 THQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQALHAASLGFVHPVS 332 Query: 208 GNSMTFKAPAD 218 G + F +P Sbjct: 333 GEELLFTSPLP 343 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 11/224 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 + P+ L IL++D+H++++NKP+G+ + P + + I Y Sbjct: 71 SEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGT-LANLIAYHYQINGETC 129 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG IV A + A L +Q ++ K+ Y A G +G ++ P+ Sbjct: 130 KVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHP 174 D + +++V G+ A T ++V+ A + + V L+ TGR+HQ+RVH+ +LGHP Sbjct: 190 GRDRSHPTRRRV-SPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQIRVHLASLGHP 248 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + GD Y + R LHA + HP + +AP Sbjct: 249 LTGDSLYGGGS--KLLNRQALHANKVQAVHPITDELIVAEAPFP 290 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 118/227 (51%), Gaps = 11/227 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DY 54 + P+E L +L+QDDH++V NKP+GL P + V + R + Sbjct: 68 EHPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQLSRLEG 127 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG++VVALT+A L F ER+ K+Y+A V G P EG P Sbjct: 128 QRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSG-LPPLEGQCREP 186 Query: 115 LICDWPNRPKQKVCYET--GKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLAL 171 L + K V E G+ A TE+ + D + + ++ TGR+HQ+RVHM L Sbjct: 187 LGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQIRVHMTHL 246 Query: 172 GHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 G+P+LGDR YA + MAPR +LHA L THPA G M F P Sbjct: 247 GYPLLGDRLYAPKAVQNMAPRQMLHAWRLGFTHPASGEDMRFTCPPP 293 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 295 bits (757), Expect = 6e-79, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 114/232 (49%), Gaps = 25/232 (10%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAES 59 P+ L +L++D ++VVNKP GL+ P E ++ R+ +P + Sbjct: 77 PEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGT-LVNRLLHHFPAIGTVGEPDRPGI 135 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSG +VVA T AA + L F+ R+ +K Y+A V+G G+V LP+ Sbjct: 136 VHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVTLPIGRHS 195 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 R K V +PA+T ++V + D + + L+ TGR+HQ+RVH AL P++GD Sbjct: 196 LERKKMSVSSPQARPAETRWKVRKAFVD-ASLLELEIHTGRTHQIRVHCTALQRPVVGDP 254 Query: 180 FY--------------ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 Y AS E A R +LHA L HP G M F AP Sbjct: 255 TYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAPL 306 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 295 bits (757), Expect = 6e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 20/226 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHRLD 64 Q L ILY DD I+V+NKP+GL+ P + + P++ VHRLD Sbjct: 82 QNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPRSGIVHRLD 141 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG +V+A + A +L RQ + R + Y+A V+G+ + + +DLP+ +R K Sbjct: 142 KDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGD-TIDLPIGRHAKDRLK 200 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 V GKPA T Y + E + ++ TGR+HQ+RVH+ HP++GD+ Y + Sbjct: 201 MAV-RPDGKPAITHYRIEERW-QTLTLLRVQLETGRTHQIRVHLSHHRHPLVGDKLYGAR 258 Query: 185 E------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 A A PR LHA L + HPA M F AP Sbjct: 259 PFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLP 304 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 24/234 (10%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----------DYPQAE 58 L ++++D H+ V++K +GL + P E V + R D + Sbjct: 95 VPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHRWPDVASDISGMDRQRPG 154 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++VVALT+ L F R +K Y+A V G P+ G +D P+ Sbjct: 155 IVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQPAGTIDAPMGRH 214 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHPILG 177 + + V G+ A ++Y V+ + V ++ TGR+HQ+RVHM +GHP+LG Sbjct: 215 PSQKTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVRIHTGRTHQIRVHMAHIGHPLLG 274 Query: 178 DRFYASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTF--KAPADF 219 D Y E +APR +LHA L+ HPA +T + PADF Sbjct: 275 DSAYGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATCERVTLWRRPPADF 328 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 16/224 (7%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQA 57 P L I Y+DD ++++NKPS L+ P + V + + Sbjct: 77 IEPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRP 136 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHR+D TSG++++A L + E ++ Y+A V G ++LP+ Sbjct: 137 GIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIAR 196 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHP 174 + +R K ++ GK A T ++++ + + V + TGR+HQ+RVH+ + HP Sbjct: 197 NTVDR-KMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIRVHLSYIKHP 255 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + GD Y LHA L HP + AP Sbjct: 256 VYGDPTYGKSVDEFN---QRLHAYKLKFIHPLTKKEICVYAPVP 296 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 14/229 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 +E+ + L L++D I+VVNKP+G++ PG + + +P Sbjct: 69 EIESKPRAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALL-HHFPSLTDTH 127 Query: 56 -----QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL 110 + VHRLD TSG IVVA +K A L+++FR R +K+Y+A G + +G Sbjct: 128 CDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATGIITETQGR 187 Query: 111 VDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA 170 + LP+ +R + V E +PA+T + V+ A + + + TGR+HQ+RVH A Sbjct: 188 ITLPIGRHPIHRKRMAVNTERARPAETLWRVLGQMAGH-TLLDVGLKTGRTHQIRVHFRA 246 Query: 171 LGHPILGDRFYA-SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGHP+ GDR Y + A APR +LHA L HP G + F AP Sbjct: 247 LGHPLAGDRVYGFRGKQSARAPRQMLHAGTLGFRHPWSGKRVEFTAPLP 295 >UniRef50_Q8DCG0 Ribosomal large subunit pseudouridine synthase A n=82 Tax=Proteobacteria RepID=RLUA_VIBVU Length = 250 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 122/223 (54%), Positives = 151/223 (67%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW I+++DDHI+ VNKPSGLLSVPGRL EH DS+ +R+Q YP+ + V Sbjct: 1 MAMLEYLPPTDPWTEIIFEDDHILAVNKPSGLLSVPGRLPEHHDSMWSRLQEQYPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++V A K AE LK+QF+ R K Y ARVWGH G++DLPLICDWP Sbjct: 61 HRLDMSTSGLMVFAKNKRAEAALKKQFQYRLTHKVYYARVWGHVEADSGMIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEY----AADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 NRP QKVC+E GKP+QT ++V + T + L P+TGRSHQLRVHM ALGHPI+ Sbjct: 121 NRPMQKVCHEHGKPSQTAFQVAKREVHANGAQTTIMRLLPVTGRSHQLRVHMQALGHPIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA +A + RL LHA L+ HP + P DF Sbjct: 181 GDEFYAQGDAFTFSERLELHAAELSFYHPKSHWLRSLFVPCDF 223 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 103/240 (42%), Gaps = 29/240 (12%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA--------- 57 P++ L I+Y+DD ++V+NKP+GL+ PG V Sbjct: 103 IIPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMDPSL 162 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHR+D TSG++VVA A+ +L +QF + + Y A VWG G + + Sbjct: 163 GLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIGR 222 Query: 118 DWPNRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 D +R + V GKPA T Y+V+E A + + + TGR+HQ+R HM +GH Sbjct: 223 DLKDRLQMAVFPPDGDIGKPAVTHYQVLEELA-YVSWIECRLETGRTHQIRAHMKHIGHT 281 Query: 175 ILGDRFYASPEARAM----------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + D Y + PR LHA+ L HP G M F + Sbjct: 282 LFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDSDIP 341 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 14/225 (6%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYP 55 E+ P+ L ILY+D+H++V+NKP+G++ P V + D Sbjct: 77 ESNLMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLLPDTI 136 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG++V A T +++L F R+ K Y+A G P+ G + P+ Sbjct: 137 RPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGRPAD--GEIQAPI 194 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R + V TGKPA + + + +D + V ++ TGR+HQ+RVHM G PI Sbjct: 195 GRHPIHRKQMAVI-PTGKPAISFCKTLG-WSDKLSFVQIEIATGRTHQIRVHMKYRGSPI 252 Query: 176 LGDRFYASPEARAM--APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y P LLHA +L HP ++ F P Sbjct: 253 LGDPLYGQISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTPPP 297 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 17/228 (7%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAE 58 P+ + I+Y+D+ I VV KP GL+ P V + + Sbjct: 75 VKPENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD T+GV+V+A A R L RQF+ER+ +K Y V G G +D P+ Sbjct: 135 IVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARH 194 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILG 177 +R + V + GK A TEY V++ + +K TGR+HQ+RVH ++GHP+LG Sbjct: 195 PVDRKRFWV-RKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLG 253 Query: 178 DRFYASPEARAMAPRL-------LLHAEMLTITHPAYGNSMTFKAPAD 218 DR Y + L +L A L HP G M F+ Sbjct: 254 DRTYGFKSSSVPKELLSLMGECNMLIAYHLGFYHPTKGEWMVFEIEEP 301 >UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID=A9CFZ5_AGRT5 Length = 222 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 108/214 (50%), Positives = 148/214 (69%), Gaps = 1/214 (0%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 YNPP +PWL I+++DD ++V++KPSGLLSVPGR DS+MTR+Q+ +P+A ++RLD Sbjct: 10 YNPPLDPWLTIVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQKQFPKALMINRLDK 69 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++++L + A + QF +RE +K YVA VWG + EG VDLPL D N+P+ Sbjct: 70 DTSGIVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRH 129 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +V +E GKPAQ+ + V+E R+ L P+TGR+HQLRVHM ALGHPILGD FYA E Sbjct: 130 RVDHENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEGE 189 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A APRL+LHA+ + HP G +T+ P F Sbjct: 190 ALTAAPRLMLHAQEVGFRHP-DGRDVTYTVPCPF 222 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 11/203 (5%) Query: 25 VVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DYPQAESVHRLDMATSGVIVVALTK 77 VVNKP G++ P V + + VHR+D TSG+++VA Sbjct: 90 VVNKPQGMVVHPAAGHSSGTLVNALLHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKND 149 Query: 78 AAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQT 137 A R L Q + + ++ Y A V G + G ++ P+ +R KQ V E G+ A T Sbjct: 150 KAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVI-EGGREAVT 208 Query: 138 EYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM--APRLLL 195 + V++ + + TGR+HQ+RVHM +GHP++GD Y + + LL Sbjct: 209 HFRVLKRYV-GYTLLKVSLETGRTHQIRVHMSYIGHPVVGDPVYGTAQKLDGTQLNGQLL 267 Query: 196 HAEMLTITHPAYGNSMTFKAPAD 218 HA+ LT+ P G+ ++F +P Sbjct: 268 HAKTLTLEQPTTGDELSFDSPLP 290 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 31/243 (12%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DY 54 E P L I+Y+DD ++++NKP+G++ PG + V + D Sbjct: 72 EASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDE 131 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHR+D TSG+IV+A L QF E + Y +WG P+ G +D Sbjct: 132 LRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTF 191 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLA 170 + NR +V GK A T Y+ +E ++ + V + TGR+HQ+RVHM Sbjct: 192 ITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQIRVHMTH 251 Query: 171 LGHPILGDRFYASPEAR---------------AMAPRLLLHAEMLTITHPAYGNSMTFKA 215 +G+ I+GD + + R LHA+ L HP M F + Sbjct: 252 MGNSIMGD---GKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTS 308 Query: 216 PAD 218 Sbjct: 309 ILP 311 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 20/228 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 ++ L +LY D ++V+NKP+GL P + ++ R+ +P + VH Sbjct: 89 EDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGT-LVNRLLHHFPDMRAMAGDRPGIVH 147 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG+++VA T++A L F ER K Y+A V G P ++G+++LP+ D + Sbjct: 148 RLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRDPKH 207 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNT-ARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 K V + G+ A++ +++ A D T + + + TGR+HQ+RVHM A+GHPI+GD Sbjct: 208 PTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVHMAAMGHPIVGDAV 267 Query: 181 YASPEAR----------AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + +A R +LHA L +HP G ++F P Sbjct: 268 YGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQPPP 315 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 39/250 (15%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------------D 53 P+ L ++++DDH++VVNKP G++ P V + D Sbjct: 98 PENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMID 157 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 P+ VHR+D TSG++V+A AA+ L+ QF R +++Y+A V G P+ G +D Sbjct: 158 VPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDA 217 Query: 114 PLICDWPNRPKQKVCY-ETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLAL 171 P+ D +R K + TG+ A + + V N + V + TGR+HQ+RVH + Sbjct: 218 PIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHAREM 277 Query: 172 GHPILGDRFY--------------------ASPEARAMAPRLLLHAEMLTITHPAYGNSM 211 GHPI+GD Y A+ E A R +LHA L HP G + Sbjct: 278 GHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTGEEI 337 Query: 212 TF--KAPADF 219 +F + P DF Sbjct: 338 SFAVEPPPDF 347 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 32/240 (13%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L I+++DD I+V++KP GL+ P E V I + V Sbjct: 174 EAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIV 233 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRER----EPKKQYVARVWGHPSPAEGLVDLPLI 116 HRLD T+G++V A A + L QF + E ++ Y A VWG P+ G +D P+ Sbjct: 234 HRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPID 293 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-----TARVVLKPITGRSHQLRVHMLAL 171 R K V + G+ A T +EV+E + + + TGR+HQ+RVH+ + Sbjct: 294 RHPHAREKMAV-RDGGREAITHWEVLETFTGRSGGEIVSLIACQLETGRTHQIRVHLAHI 352 Query: 172 GHPILGDRFYAS-------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GHP+LGD Y A R LHA +L + HP+ G + +++ Sbjct: 353 GHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESGLP 412 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAE 58 P+ + IL++D+ I VV KP+G++ P V + +A Sbjct: 78 IKPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNISEYGGKERAG 137 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD T+G++++A ++ A +EL++QF+ER K+Y+A V G G +DLP+ Sbjct: 138 IVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDHGFIDLPIGRS 197 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 NR K + A TEY V + +N V +K TGR+HQ+RVH A+GHP+ Sbjct: 198 IYNRKKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGRTHQIRVHFSAIGHPLFN 257 Query: 178 DRFYASPEARAMAPRL----------LLHAEMLTITHPAYGNSMTFK 214 D+ Y +++ + ++ L A + HP G + Sbjct: 258 DKVYGFKKSQLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEKIDIT 304 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 42/258 (16%) Query: 1 MGMENYNPP-----------QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR 49 + E Y PP + L ILY+D+ I+V+NK +G++ PG E ++ Sbjct: 63 VEAEIYYPPILDSEYKNIIAENIPLNILYEDEDILVINKAAGMVVHPGFGNEKGT-LIHG 121 Query: 50 IQRDYP------QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGH 103 I+ + + VHR+D T+G++V+A + A++ L +QF + +++Y+A VWG+ Sbjct: 122 IKYHFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGN 181 Query: 104 PSPAEGLVDLPLICDWPNRPKQKVCYET---GKPAQTEYEVVEYAADNTARVVLKPITGR 160 EG + + D NR + + + + T Y+V+E V TG+ Sbjct: 182 IQKQEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFK-YLTYVSCNLETGK 240 Query: 161 SHQLRVHMLALGHPILGDRFYAS-----------------PEARAMAPRLLLHAEMLTIT 203 +HQ+RVH LGHP+ D Y ++ + R LHA L+ Sbjct: 241 THQIRVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFI 300 Query: 204 HPAYGNSMTFKA--PADF 219 HP F P DF Sbjct: 301 HPK-NRKCHFTCSIPEDF 317 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 11/214 (5%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVHRLD 64 + L I Y+D+ +MV+ KP+GL+ P + + + + +V+RLD Sbjct: 78 DMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGT-LANGMIAYWKKRGENRKFRAVNRLD 136 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + A + R + R ++ Y A V G +G ++ P+ + Sbjct: 137 KDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTINTPIGLAENSFIT 196 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V G+ A T Y V+ + + V +K TGR+HQ+RVHM + GHP+ GD Y Sbjct: 197 RQV-RPDGQTAVTHYRVLAR-GEGMSFVEVKLETGRTHQIRVHMSSEGHPLAGDDLYGG- 253 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LHA L+ HP G +M+++ P Sbjct: 254 -EREHIGRQALHAWGLSFVHPRSGLAMSWEEPLP 286 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 103/242 (42%), Gaps = 28/242 (11%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------D 53 PQ+ L ++Y+D+++ ++NK +G++ PG V + R + Sbjct: 78 EPMNVLPQDIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNAILYRFGENLSSGKE 137 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + + VHRLD TSG+I++A +L F RE KK Y A G P P +G ++ Sbjct: 138 FNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAITTGIPEPEKGEIET 197 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 L N V E G+ A T Y+ ++ A V + P TGR HQ+RVH + + Sbjct: 198 YLARSNKNPRTICVTNE-GRYALTHYKTIKTW-HYFALVEINPATGRMHQIRVHFAHIRY 255 Query: 174 PILGDRFYASPEARA-----------------MAPRLLLHAEMLTITHPAYGNSMTFKAP 216 PILGD Y S R LH+ L HP G ++ AP Sbjct: 256 PILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFHPITGYPISVSAP 315 Query: 217 AD 218 Sbjct: 316 IP 317 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 9/219 (4%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------DYPQAESV 60 P + + I+Y D V+NKP+G+ P V + + + V Sbjct: 74 LTPVKMDIEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEFDITDDNDLRPGIV 133 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++VA + + L + F +R+ K+Y+A WG P E ++ P+ + Sbjct: 134 HRLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKELEFTIEQPIGRHYK 193 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R + V E G+ +++ V++ +N ++ TGR+HQ+RVHM G P+ GD Sbjct: 194 DRKRMCV-REDGRYSKSGVRVLKQN-NNAFLAEIRIFTGRTHQIRVHMSHAGFPLAGDVV 251 Query: 181 YASPEA-RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y ++ + R LH+ L P G M F++P Sbjct: 252 YGHRQSLKLPIKRQALHSFRLAFVSPFTGEDMVFESPLP 290 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 24/237 (10%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + E P++ L I+Y+DD++M++NKP ++ P V Sbjct: 78 VPEETKITPEDIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTFYCQNLSQIN 137 Query: 53 DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 +A VHRLD TSGV++V + A + QF +R KK+Y A V G + ++ Sbjct: 138 GPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEIN 197 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 +P+ +R K V +TGK A + YEV+E V + P TGR+HQ+RVHM A+G Sbjct: 198 MPIGRHRVDRQKMAVRRDTGKNATSVYEVIERFR-GYTLVKIMPKTGRTHQIRVHMQAIG 256 Query: 173 HPILGDRFYAS---------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 HP++ D Y+ P+ ++ R LHA + HP M F+ Sbjct: 257 HPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQ 313 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 11/222 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---QAES- 59 P L I+Y+D+ ++V++KP+ + P + +++ + Y +A Sbjct: 75 SENIVPVPMKLDIVYEDEDLLVIDKPADMPVHPS-IHNFDNTLANGLAYYYESRGEAFVY 133 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 + RLD T+G+++VA + L + RE ++Y+A V G + AEG VD P+ Sbjct: 134 RCITRLDRDTTGLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGK-TEAEGTVDAPIAR 192 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++ V ++ G+ A T Y +EY D + V LK TGR+HQ+RVHM +GHP+ G Sbjct: 193 VEGSVLERCVDFQRGERAVTHYRTLEY-RDGYSLVRLKLETGRTHQIRVHMKYIGHPLTG 251 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D Y + LH+ L HP G M F + + Sbjct: 252 DFLYNPD--YRLMDHQALHSHYLAFRHPITGERMEFTSQPPW 291 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 16/232 (6%) Query: 1 MGME--NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--- 55 M E PQ+ L I+++DD+++VVNKP+G++ P + +++ I + Sbjct: 74 MEEEISEDILPQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYT-NTLANGIVHHWQVRG 132 Query: 56 ---QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 + VHRLD TSG++V+A ++L Q + K Y A V+G PSPA+G V Sbjct: 133 ERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGTVG 192 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLAL 171 P+ + + P ++ G P+ T Y+ ++V LK TGR+HQ+RVHM + Sbjct: 193 APIDRNPED-PHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRVHMKHI 251 Query: 172 GHPILGDRFYA-----SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 G P++GD Y E A R LHAE L +THP + A Sbjct: 252 GCPLIGDGMYGLQTGKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAALP 303 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 11/224 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------- 55 ++ P + L + + D+ ++VVNK + P ++ R+ +P Sbjct: 72 DSSVVPDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEPT-LVHRVAHHFPALLSQSGE 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG+IV+AL+++A L + F RE K+Y+A V G P G V L L Sbjct: 131 RPGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDS-SGTVSLAL 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHP 174 + + V G+ A+T +E++ AAD + V ++ +TGR+HQ+RVHM ALGHP Sbjct: 190 GRHPSIKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAALGHP 249 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +LGD YA + A APR +LHA L HP SM F AP Sbjct: 250 LLGDAVYADKQTAARAPRQMLHAWQLRFEHPRSFESMEFCAPPP 293 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 14/221 (6%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 ++ L ++Y+D+H++VV+K +G++ P V + R P +A VH Sbjct: 79 EQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRAGLVH 138 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD TSG++VVA + AA R L R+ ++Y A WGH + V+ P+ D + Sbjct: 139 RLDKDTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIARDPRD 198 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R + + ++GK ++T++ + D+ + TGR+HQ+RVH+ + GHP++GD Y Sbjct: 199 RTRMAIV-QSGKASRTDFTRLARF-DSVDLLRAHLHTGRTHQIRVHLASTGHPVVGDDTY 256 Query: 182 ASPEARAMA----PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R +A R LHA L HP G+ + ++P Sbjct: 257 GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLP 297 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 99/251 (39%), Gaps = 40/251 (15%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAE 58 + L IL++D H++++NK +G+ P + V + + Sbjct: 75 EAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQGQLSGIGGVERPG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+V A T++A L F + + Y A G P P G ++ + Sbjct: 135 IVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIARS 194 Query: 119 WPNRPKQKV----CYETGKPAQTEYEVVEYAADN--------TARVVLKPITGRSHQLRV 166 +R K V + A T Y+ VE A + + TGR+HQ+RV Sbjct: 195 ESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAAALLECRLETGRTHQIRV 254 Query: 167 HMLALGHPILGDRFYASP-------------------EARAMAPRLLLHAEMLTITHPAY 207 HM G P++GD Y A R LHA +L HP Sbjct: 255 HMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQALHAAVLGFVHPIT 314 Query: 208 GNSMTFKAPAD 218 G ++ ++AP Sbjct: 315 GETLRYEAPLP 325 >UniRef50_A7K2Y9 Pseudouridine synthase n=4 Tax=Vibrio RepID=A7K2Y9_VIBSE Length = 250 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 121/223 (54%), Positives = 159/223 (71%), Gaps = 4/223 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M M Y PP +PW+ I+++DD I+ VNKPSGLLSVPGRL EH DS+ +R++ +P+ + V Sbjct: 1 MAMLEYTPPTDPWVDIVFEDDDILAVNKPSGLLSVPGRLAEHYDSMWSRLKEVHPEIQVV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM+TSG++++A K +ER LK+QF+ R K Y ARVWGH P EG +DLPLICDWP Sbjct: 61 HRLDMSTSGLMLLAKNKPSERALKKQFQYRLTHKVYYARVWGHVEPQEGNIDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEY----AADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 NRP+QKVC++ GKP+QT ++VV+ +T V L PITGRSHQLRVH++A+GH I+ Sbjct: 121 NRPRQKVCFDDGKPSQTLFQVVKREVHSDGTHTTVVRLLPITGRSHQLRVHLMAIGHAIV 180 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 GD FYA+ EA + RL LHA L+ HPA + P DF Sbjct: 181 GDEFYATEEAYQFSERLELHAAELSFYHPATDQLSSIFVPCDF 223 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 19/228 (8%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAESVHR 62 P+ L ++++DD I+V+NKP L+ P + + D P+A VHR Sbjct: 104 KPEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPTLIDVPRAGIVHR 163 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG++VVA T AA+ +L RQ + R ++Y A V G PS G++D + D N Sbjct: 164 LDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQ-RGVIDAAIGRDPRNP 222 Query: 123 PKQKVC-YETGKPAQTEYEVV---EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + KV E KPA+T Y + + A + + + + TGR+HQ+RVH+ +GHP++GD Sbjct: 223 LRFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQIRVHLEHVGHPLIGD 282 Query: 179 RFY-------ASPEARAM-APRLLLHAEMLTITHPAYGNSMT-FKAPA 217 Y P AR R LHA L + HP + F +PA Sbjct: 283 PVYRRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFHSPA 330 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 112/262 (42%), Gaps = 52/262 (19%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 P+ L ++++ D ++VVNKP+G++ P V + Sbjct: 68 EPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDEV 127 Query: 53 -----------------DYP--QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPK 93 D+P + VHRLD TSG++VVA A + L QF+ Sbjct: 128 SEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTVD 187 Query: 94 KQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET-GKPAQTEYEVVEYAADNTARV 152 ++Y A VWG +P++G ++ + D +R + V E GK A+T YE VE A +T+ V Sbjct: 188 RRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVETHA-HTSVV 246 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM----------------APRLLLH 196 + TGR+HQ+RVH A GHP+LGD Y R P LH Sbjct: 247 EFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPHPALH 306 Query: 197 AEMLTITHPAYGNSMTFKAPAD 218 A L HP + F+A Sbjct: 307 AYRLGFDHPTTEERLRFEADPP 328 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 289 bits (741), Expect = 4e-77, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 117/221 (52%), Gaps = 13/221 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAESV 60 + L +L++D H++ VNK +G++ PG V + + V Sbjct: 76 VDIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSLSGIGGVERPGIV 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD T+GVIVVA T AA R L QF R KK+YVA V G P G +D + Sbjct: 136 HRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSIDRAIARHPV 195 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 +R + V E G+PA+T++E+VE D A V + TGR+HQ+RVH+ +LGHPILGD Sbjct: 196 HRHRMTV-GEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLKSLGHPILGDAL 254 Query: 181 YASPEARAMA---PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y +A R++LHAE L +THP G + +AP Sbjct: 255 YGWKPEPRLATQPARVMLHAEHLVLTHPISGKELDLRAPLP 295 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 20/226 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRLD 64 Q+ + ++Y+D+ I++VNKP L++ PG + D +A VHRLD Sbjct: 76 QDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDRAGIVHRLD 135 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++VVA ++ A++ L RQ + ++Y A V+GH G VD P+ D +R + Sbjct: 136 KNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISG-GTVDKPIGRDPKDRIR 194 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS- 183 Q V E+GK A T Y V+E A + V + TGR+HQ+RVH+ +GHP++ D Y Sbjct: 195 QTV-TESGKDALTHYRVIERFAHH-THVKVMLETGRTHQIRVHLSFIGHPLIADPMYGGK 252 Query: 184 -----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA+ LT+ HP M++K P Sbjct: 253 IRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLP 298 >UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria RepID=A3MZ33_ACTP2 Length = 237 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 136/222 (61%), Positives = 170/222 (76%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP EP+L +Y+D+HI+V+NKPSGLLSVPG E+ DS MTR+Q+ Y E Sbjct: 16 MALIEYHPPLEPFLTEVYRDNHILVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEPA 75 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP---AEGLVDLPLIC 117 HRLDMATSG+++ AL+KAAE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 76 HRLDMATSGILLFALSKAAEKELKRQFRDREPKKHYIALLWGKLGEKVGDTGEMNFPLIC 135 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+ + +NT RV L PITGRSHQLRVH LALGHPILG Sbjct: 136 DWENRPRQKICYERGKKAITHYEVLAHLPNNTTRVKLTPITGRSHQLRVHSLALGHPILG 195 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYASP A++++PRL LHAE L+ITHP G +MTF A +F Sbjct: 196 DKFYASPLAKSLSPRLCLHAESLSITHPITGEAMTFTAQTEF 237 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P++ L IL++D+H++ VNKP G++ P R + V Sbjct: 110 PEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTVGGQHRPGIV 169 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGVI+VA T L QF +R K+Y A G P +V P+ Sbjct: 170 HRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRDRDVVSQPIGIHPF 229 Query: 121 NRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K + + T + A+T + V+E A + A V P TGR+HQ+RVH+ + P+L D Sbjct: 230 HREKMAIRPGHSTSRDAETMFHVLERFAQHAA-VECLPKTGRTHQIRVHLAHVRTPVLCD 288 Query: 179 RFYASPEA------------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y + R LHA L+I HP G +T +AP Sbjct: 289 KLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIEAPLP 340 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLE-----EHKDSVMTRIQRDYP--------Q 56 ++ L I+Y+D ++VVNKP+G++ G V + R + Sbjct: 100 EDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQEKLSKTGGDLR 159 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG+I+VA AA + L F +RE K Y+A V GH + G ++ + Sbjct: 160 PGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIAEDRGTINAAIA 219 Query: 117 CDW-PNRPKQKVCYETGKPAQTEYEV---VEYAADNTARVVLKPITGRSHQLRVHMLALG 172 D E + A + Y V +E V ++ TGR+HQ+RVH+ ++G Sbjct: 220 RDVIRRTRMTTRRTEGARTAISHYRVQRRIETRWGKFTLVSVRIETGRTHQIRVHLSSIG 279 Query: 173 HPILGDRFYASPEARAM------------------APRLLLHAEMLTITHPAYGNSMTFK 214 HP++GD Y +P + PR LHA L HP + + Sbjct: 280 HPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKFPHPRSEKPLHLE 339 Query: 215 APAD 218 AP Sbjct: 340 APLP 343 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 109/243 (44%), Gaps = 28/243 (11%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------- 54 + P++ L ILY D+++ V+NK + ++ PGR + +Q + Sbjct: 79 EPDQRVQPEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGT-LAGALQFHFDSLSDVA 137 Query: 55 --PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 +A VHRLD TSGV+VVA + L RQF ER +K+Y A VWG V+ Sbjct: 138 GQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDADYVE 197 Query: 113 LPLICDWPNRPKQKVCYE--TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA 170 + + NR + VC + A T YEV + V L+P TGR+HQLRVHM Sbjct: 198 TYVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFR-GFTYVKLQPQTGRTHQLRVHMHH 256 Query: 171 LGHPILGDRFYASPE---------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 LGHPI+ DR Y + R LHA L HP M F+A Sbjct: 257 LGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEA 316 Query: 216 PAD 218 P Sbjct: 317 PLP 319 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 107/251 (42%), Gaps = 37/251 (14%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYP 55 + P+ L ILY+DD ++V+NKP+G++ P R R Sbjct: 69 SDDTVPENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPT 128 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSGVIVVA A L Q+ +R +K+Y A +G + + Sbjct: 129 RPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIHASI 188 Query: 116 ICDWPNRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 R KQ + + T K A T YEVVE RV ++P TGR+HQ+RVH+ +G Sbjct: 189 GRHPYQRDKQAIREGHATSKTASTFYEVVERHG-RVTRVDVRPKTGRTHQIRVHLAHIGC 247 Query: 174 PILGDRFYASPE--------------------------ARAMAPRLLLHAEMLTITHPAY 207 PIL DR Y + R LHA+ LT T+P Sbjct: 248 PILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQT 307 Query: 208 GNSMTFKAPAD 218 G MT AP Sbjct: 308 GKEMTLTAPLP 318 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 92/218 (42%), Positives = 121/218 (55%), Gaps = 21/218 (9%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMATSGV 70 L ILY+DD+++V+NKP G+LSVPG+ + DSV R+ YP+ VHRLDMATSG+ Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGKGDA--DSVYQRLSILYPEATGPIIVHRLDMATSGL 397 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 ++ A TK A + L+ QF+ R +K+Y+A + G EG + LPL D +RP+Q V E Sbjct: 398 LLAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQIVSEE 457 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEAR 187 GKPA T Y V+E + + P TGR+HQLRVH L PILGD Y Sbjct: 458 FGKPALTHYRVLERTSGK-TLIAFYPQTGRTHQLRVHAAHPLGLHCPILGDELYGRK--- 513 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFK-------APAD 218 A RL LHAE L THP + + P Sbjct: 514 --AERLYLHAEYLAFTHPITSERIEIQKSPAFPRCPMP 549 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 10/223 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 P++ L ++Y+D I+V+NKP G++ P + ++ + + + + Sbjct: 71 EENQDIVPEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQNGT-LSNGVLYYFKEKNENS 129 Query: 57 -AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 V+RLDM TSG++++A + L R ++ + K Y+A V G+ G+++ P+ Sbjct: 130 IVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSGVINKPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 ++ V E G+ + T ++VVE D V L TGR+HQ+RVH+ ++GHPI Sbjct: 190 YRVGEGTLRR-VIDERGQRSVTRFKVVESYED-ADLVELTLETGRTHQIRVHLSSIGHPI 247 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y E R LHA L I HP G + ++ Sbjct: 248 YGDSLYG-KEEHEYIDRQALHAYKLQIPHPKDGRILKLESDLP 289 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 11/221 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES---- 59 P+ L I Y+DDH++V+NKP G+ ++P R + + + Y Sbjct: 95 NESLRPECIPLDIHYEDDHLLVINKPQGMPTIPSREHPSRT-LANAVMGYYESHHIPFTF 153 Query: 60 --VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V+RLD TSG++VVA A +L + R + K+ Y+A G P EG + P+ Sbjct: 154 HAVNRLDRDTSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTIHAPIKR 213 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++ V G+ A T Y+V+ + V + TGR+HQ+RVH LGHP+LG Sbjct: 214 RPSSIIERMV-AADGQEAITHYKVI-NDNQAYSEVEINLETGRTHQIRVHFAHLGHPLLG 271 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + + R LH + + + HP G + F AP Sbjct: 272 DDLYGG--SIELLARQALHCQRVELIHPFTGKHLHFSAPLP 310 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 10/223 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QA 57 E PQ+ +Y DD + VV K +G+ PG + V ++ P + Sbjct: 68 EESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGPLPGAGLRP 127 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD+ TSG++VVA T A L+R+F +R +K Y+A V G ++G +D P+ Sbjct: 128 GIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQGTLDGPIGR 187 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 +R K V G+ A T Y + + + TGR+HQ+RVHM ++G + G Sbjct: 188 SRYDRLKMAV-RADGRRAVTRYRTLWTRGS-LSLTACRIETGRTHQIRVHMASIGCYLDG 245 Query: 178 DRFYASPEARAMA--PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 DR Y + R+ LHA L+ HP+ G +M F++P Sbjct: 246 DRLYGPKDVSRHFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLP 288 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 12/214 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESV 60 P+ L ILY+D +++V+NKP+G+ E V + + + +A + Sbjct: 104 PENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYKIKDFDFVGNKERAGII 163 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++++ ++ QF+ R KK Y A V G ++LP+ Sbjct: 164 HRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVLKDNYIEINLPIGRHHV 223 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R K V E GK A T +V++ + + + TGR+HQ+RVH G P+ GD+ Sbjct: 224 YRKKMTV-REDGKEALTHIKVLKRFNSH-TLIEINLKTGRTHQIRVHSSYKGFPVAGDKI 281 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 Y ++ + L+L A+ + HP + F+ Sbjct: 282 Y--SKSFSKYSGLMLVAKKIEFMHPITKELLDFE 313 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------- 52 + E+ + L I Y+D++++++NKPSGL+ P + V + Sbjct: 63 LEKESNIEAVDMPLDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDA 122 Query: 53 -DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 + VHR+D TSG++++A EL + + + K+ Y+A G + Sbjct: 123 NGLLRLGIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKI 182 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHM 168 +LP+ D NR + ++ GK + T +++ + V + TGR+HQ+RVH+ Sbjct: 183 NLPIQRDTKNRKLMSI-HKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHL 241 Query: 169 LALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + HP+ GD Y LHA L+ HP + + Sbjct: 242 AYIKHPVYGDSIYGKSVDEFN---QRLHAYKLSFMHPVINKLIEVYSDIP 288 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 22/236 (9%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYP 55 E+ P+ L IL++DD ++V+NK G++ PG E V + Sbjct: 77 EDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRGAPR 136 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG ++VA ++ A EL RQF+ E K+Y+A V+G + A G + + Sbjct: 137 RPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGASGEIRTGM 196 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 +R + V + G+ A ++++V + + + + TGR+HQ+RVH+ + HP+ Sbjct: 197 GRHPVDRKRMAVLEKGGREAVSQWKVAVAWGE-VSLLRVVIKTGRTHQIRVHLSHMQHPV 255 Query: 176 LGDRFYASPEARAMA-------------PRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y + +A A R +LHA L HP G ++F AP Sbjct: 256 VGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTAPLP 311 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 22/233 (9%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQA 57 P++ L IL++D+H++V+NKP+G++ P +H V + + Sbjct: 80 ILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPGINGVERP 139 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG +V+A ++ + L F E +QY+A G PS ++LP+ Sbjct: 140 GIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKCIELPIGR 199 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 R K V ++G+ + T+ V E+ +++ L TGR+HQ+RVHM P+LG Sbjct: 200 HPHQRQKMAV-TDSGRESITDAAV-EHIFGPFSQMRLTLHTGRTHQIRVHMAHENLPVLG 257 Query: 178 DRFYAS------------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D YA A A R LHAE+L HP G M+F+AP Sbjct: 258 DPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLP 310 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 9/214 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-----AESVHRLD 64 + L I+Y+DD+++V+NKP + ++P R H + Q V RLD Sbjct: 76 EPIPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHYEQQQLQTTVHVVTRLD 135 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + L Q ++ K++Y A G+ G +D P+ + + Sbjct: 136 RDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLVGTIDAPIGRKGDSIIE 195 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V G+ A T YEV++ + V ++ TGR+HQ+RVH +GHP++GD Y Sbjct: 196 REV-RLDGQRAVTHYEVLQQ-KNEMTHVSIQLETGRTHQIRVHFSHIGHPLVGDDLYGG- 252 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LH+ LT HP + +MTF AP Sbjct: 253 -LREHIDRQALHSCELTFFHPFFEKTMTFHAPLP 285 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 11/214 (5%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE------SVHRLD 64 + L I+Y+D+ I+V+NKP+ + P +++++ I + + ++RLD Sbjct: 78 KMDLNIIYEDEDILVINKPADMPVHPSAGN-YENTLANGIAWYFAEKGEDFVYRCINRLD 136 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 T+G +++A + L Q ++R+ + Y+A V G P G ++ P+ + Sbjct: 137 RDTTGALILAKNPLSAAILSVQMKKRQILRTYLALVDG-LLPDSGTINAPIARMEGSVIT 195 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 ++V + TG+ A T YE + A + L TGR+HQ+RVHM +GHP+ GD Y Sbjct: 196 REVNFGTGESAITHYERLA-AGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGDYLYNPD 254 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R R LH+ L THP G M F AP Sbjct: 255 YRR--INRQPLHSYQLEFTHPTTGKVMLFTAPLP 286 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 22/234 (9%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------- 55 + P + ++Y+D I+++NK G+ PG + V + Sbjct: 86 DTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKA 145 Query: 56 -QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + +HRLD TSG++V+A + + L +++ KK+Y+A VWG P+P + Sbjct: 146 TRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKNY 205 Query: 115 LICDWPNRPKQKVCY--ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 + N+ V + GK A TEY+ + ++ + + + TGR+HQ+RVHM +G Sbjct: 206 ICVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRTHQIRVHMSYIG 265 Query: 173 HPILGDRFYASPEAR-----------AMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + I+GD+ Y ++ R LHA L THP + F + Sbjct: 266 NSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNTYIEFHS 319 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 23/237 (9%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 P+ I+Y+D+ +++VNK +GL+ P + + + Sbjct: 73 ETSTDILPEPIPFDIVYEDEALLIVNKAAGLIVHPTHGHYTGT-LANGVVYYWQEKGEKF 131 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG+I +A + + Q E K+Y A V G P+ EG +D P+ Sbjct: 132 RFRPVHRLDQETSGLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPI 191 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 D P +++ +G P+ T Y+V E D RV L+ TGR+HQ+RVHM ++GHP+ Sbjct: 192 DRDPAE-PHRRIVTPSGYPSLTYYKVAEAYGDGA-RVELRLGTGRTHQIRVHMTSIGHPL 249 Query: 176 LGDRFYASP--------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD+FY P A R LHA L HP G ++TFK+ Sbjct: 250 IGDKFYGMPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKSELP 306 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 10/223 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES-- 59 + P L I+YQD ++V+NK G+ PG D++ + Y + Sbjct: 72 EVSGAIVPAPGPLDIVYQDQDVLVLNKAPGVAVHPGPGHYS-DTIGNFLMDYYRKQGILA 130 Query: 60 ----VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 VHRLD TSG+++VAL A+ LK Q ++ Y+A G P+P G++D P+ Sbjct: 131 DFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPI 190 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 + + V G+ A T Y + D V L+ TGR+HQ+RVHM LGHP+ Sbjct: 191 GRLEGSVLARTV-RPDGQRAVTHYRTLRTVNDRA-LVRLELETGRTHQIRVHMAHLGHPL 248 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y + E +++ PR LHA L+ THP G +M F AP Sbjct: 249 TGDFLYGT-EDQSLIPRPALHAAELSFTHPITGKTMAFTAPLP 290 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYP 55 + E + L I+Y+DD I+V+NKP L+ PG + + + P Sbjct: 71 IEDEIDVIAENISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLP 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD T+G++VVA + ++ L Q + + ++Y A VWG + ++ P+ Sbjct: 131 RGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNK-VIQKPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 R K V GK A+T+ E++E + V TGR+HQ+RVHML PI Sbjct: 190 GRHPRQRTKMAVTKVNGKDAETKLEILERFNYH-TYVRCLLKTGRTHQIRVHMLDNNSPI 248 Query: 176 LGDRFYASP-------------EARAMAPRLLLHAEMLTITHPAYGNSM--TFKAPADF 219 +GD+ Y ++ R LHA L + HP M T P D Sbjct: 249 VGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDM 307 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 11/225 (4%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----- 55 M E P+ L ++Y+DDH+++VNKP + + P + + + Sbjct: 72 MEEEYDVEPEYGELHVVYEDDHVLIVNKPEKMDTHPSEKGGMGT-LANLVAFHFQMQGLE 130 Query: 56 -QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + +HRLD T+G +V A + A + R ER+ K+ Y A V G +G +D Sbjct: 131 TKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAA 190 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGH 173 + D + +++V G A T Y+V EY N V L+ TGR+HQ+RVHM G+ Sbjct: 191 IGRDRHHATRRRV-SPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQIRVHMSYNGN 249 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P++GD Y R LHA + HP + P Sbjct: 250 PLVGDVLYGGGT--KYMSRQALHAMKINFLHPITKEEIEVDVPFP 292 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 13/223 (5%) Query: 1 MGMENYNP-PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---- 55 + E P P L I+++DDH++VVNK + + P + + +++ + + Sbjct: 82 IKEEQIEPTPTYVPLHIVFEDDHVLVVNKRAHMDVHPTQPGQT-NTLANAVAFHFQCEGI 140 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + +HRLD TSGVI+ A A L + +R ++ Y+A V G+ +G ++ Sbjct: 141 YSKVRHIHRLDRDTSGVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGTIEA 200 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALG 172 P+ D + +++V +TG A T YE ++Y + + V L TGR+HQ+RVHM +G Sbjct: 201 PIGRDRHHPTRRRV-SKTGDTAITHYERLQYDKQKHVSLVRLTLDTGRTHQIRVHMSYIG 259 Query: 173 HPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 HP++GD Y R LHA L+ HP +T A Sbjct: 260 HPLVGDTLYGGK---PWIDRQALHAFSLSFLHPFTEELITCSA 299 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 20/231 (8%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAE 58 P + L ++Y+D ++V++K + PG EH + R + Sbjct: 76 PNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRPG 135 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSG++V A T+ A L + + KK+Y+A WG P P G++ + Sbjct: 136 IVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNIRVK 195 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + + GKPA+TEYEV + + + + TGR+HQ+RVHM +GH I+GD Sbjct: 196 RSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVHMSHIGHSIVGD 255 Query: 179 RFYAS----------PEARAMAPRLLLHAEMLTITHPAYGNSMTFKA-PAD 218 + Y P R LHA +L HP+ G + F + PAD Sbjct: 256 QKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPAD 306 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 13/222 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--------PQ 56 N PQ L I+Y+D ++ V+NKP+ L+ P L K +++ + + + Sbjct: 73 NLQTPQNLNLDIIYEDPYLAVINKPANLVVHPS-LSFQKTTLVNGLLHQFNTLSHIDTQR 131 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD T+G+++VA T +L+ F++R+ K Y A + G +G++ LP+ Sbjct: 132 PGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEG-FLEDKGIIKLPIG 190 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + NR K +V GK A T ++ ++ + + + TGR+HQLR H L HPI+ Sbjct: 191 RNNHNRLKMQV-MPDGKTAVTHFKTLQRF-SHFSLMECNLETGRTHQLRAHFSFLKHPIV 248 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y S LH+++L HP ++ +AP Sbjct: 249 GDLLYDSSHHITPL-GQFLHSKILKFNHPITNQNLILEAPLP 289 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 22/234 (9%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYPQAES 59 N P+ + I+Y+D ++VVNKP+GL+ PG + V + P+A Sbjct: 78 NLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNALLHHCPELQLLPRAGI 137 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 +HRLD T+G+++VA + L RQ + RE K+ Y+ V G+ G +D Sbjct: 138 IHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYVISG-GTIDTGFGRHP 196 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 NR K V + G+ A T Y + ++ D + + +TGR+HQ+RVHM + HP++GD+ Sbjct: 197 KNRLKMAV-TDFGRQAVTHYNINKHYKD-FTLLNVSLMTGRTHQIRVHMNYINHPVVGDQ 254 Query: 180 FYASPEARAM------------APRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y R LHA ++ HP +T A P DF Sbjct: 255 LYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEITLNALLPDDF 308 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 21/228 (9%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------------DYPQ 56 P+ L +LY+D+H++ VNKP G+++ P V + R D + Sbjct: 92 PEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYR 151 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEG--LVDLP 114 VHRLD TSGVIVVA T A L F++R K Y+A G +G V+ P Sbjct: 152 PGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKA-QGPVSVNAP 210 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHMLA 170 + R + V + AQT + + D A V +P TGR+HQ+RVH+ Sbjct: 211 VGRHPTARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTHQIRVHLAH 270 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LG PILGD Y A A+ PR LHA+ LT+ HP G ++ AP Sbjct: 271 LGSPILGDAVYG--RASAVMPRHALHAQFLTLPHPVTGETLHLHAPVP 316 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 103/235 (43%), Gaps = 26/235 (11%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---------DYPQAES 59 P++ L ILYQD+ + +VNKP+ ++ P + V + +A Sbjct: 104 PEDIPLDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFREHLSTGAGHLRAGI 163 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD TSGVI+VA R+L QF R+ K+YVA G ++ L Sbjct: 164 VHRLDKDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELERDSDYIEGALKMHP 223 Query: 120 PNRPKQKVC-YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 +R K V K A + YEV+E V ++P TGR+HQ+RVH+L +G +L D Sbjct: 224 YDRLKMIVSTDPDAKHALSYYEVLERFR-GFTLVKVQPRTGRTHQIRVHLLHVGCAVLAD 282 Query: 179 RFYASP---------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y E + R LHA L HP G + +AP Sbjct: 283 KIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWIEAEAPLP 337 >UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q2CAH0_9RHOB Length = 215 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 117/217 (53%), Positives = 146/217 (67%), Gaps = 2/217 (0%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62 M + P + L +L++D +++V+KP+GLLSVPG+ E D ++ R+Q +P A VHR Sbjct: 1 MSSDYDPPDVPLAVLHEDHEVVLVDKPAGLLSVPGKGEHLADCLLARVQAAFPTALLVHR 60 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSGV++ ALT A+R L QF +R+ +K YVARV G + G VDLPLI DWPNR Sbjct: 61 LDRDTSGVMIFALTPHAQRHLGLQFEKRQTRKTYVARVAGRIADKTGTVDLPLIVDWPNR 120 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 PKQ V +E GKPA T++ VV A+D RV L P TGRSHQLRVHMLALGHPILGD FYA Sbjct: 121 PKQMVDHENGKPAVTDWRVV-RASDAETRVRLFPKTGRSHQLRVHMLALGHPILGDPFYA 179 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 ARA PR++LH+E L HP G M APA F Sbjct: 180 EGPARAH-PRMMLHSETLQFRHPDGGRGMRITAPAPF 215 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 8/222 (3%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 + Y P L I+Y+D H++V+NKP+ +L P +E+ V + Q Sbjct: 81 KEKTYYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNL 140 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 +HRLD T+G++++A + A + QF+ ++Y+A V G+ + ++ P+ Sbjct: 141 VRPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIG 200 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + K+KV + GK A T +VV+ + + +K TGR+HQ+RVH+ LGHP+L Sbjct: 201 KTRDSLIKRKVDHTLGKRAVTHIKVVK-PGGLISLIRVKLETGRTHQIRVHLSHLGHPLL 259 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y + + R LH+ +T P +TFKAP Sbjct: 260 GDTLYGGEDI--LIKRPALHSYKVTCCLPFKHKEVTFKAPLP 299 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 10/225 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 + + +E L ILY+D+ I++VNK G++ P V + + Sbjct: 79 EIPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESLPGSS 138 Query: 56 --QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD TSGV+V+A T+ + + L QF +R +K Y+ + Sbjct: 139 LLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPYLRYSFEA 198 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 + +R K V GK A+T + ++ +A+ + + +P++GR+HQ+RVH+ LG Sbjct: 199 NIHRHASDRKKMAVHRLKGKTAETRFTLL-FASSQASFLKCEPVSGRTHQIRVHLSHLGF 257 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 PI+GD Y + P LLLHA L I HP G + F AP Sbjct: 258 PIIGDPLYGKGVRKYPFP-LLLHAYALKIEHPRSGKKIEFMAPLP 301 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 20/227 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 PQ L ++Y+D+ ++V+NKP GL+ PG + + + D P+A +HRL Sbjct: 84 PQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRL 143 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++++A T A+ L + + R+ ++Y A V G ++ P+ +R Sbjct: 144 DKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGR-TIEAPVGRHPIHRT 202 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + V E G+PA T + +++ + + ++ TGR+HQ+RVHM + HP+ GD Y S Sbjct: 203 RMAVV-EFGRPAITHFRIIKRYRAH-THIRVQLETGRTHQIRVHMAHIHHPLAGDPVYGS 260 Query: 184 P------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 A R LH L +HP M AP Sbjct: 261 HVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAPLP 307 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 10/222 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 G ++ P + L I+Y+DD +++VNKP+GLL P + + + Sbjct: 63 GDDSCLTPMKMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGA 122 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 +HRLD TSG++ +A + L + K+ Y+A V G PS G +D P+ Sbjct: 123 FHPIHRLDRNTSGLVAIAKHPHIQHALSGGGAKG-LKRLYLAVVTGIPSSLMGRIDAPIG 181 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + K+ V G+PA T Y V+ + + V L+ +TGR+HQ+RVH+ +GHP+L Sbjct: 182 RHPNSIIKR-VVRSDGQPAITLYRVLSTFSM-ASLVELELLTGRTHQIRVHLSHIGHPLL 239 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y + R LHA L+ HPA +T +P Sbjct: 240 GDDLYGGATD--LIRRQALHAASLSFRHPATDKVLTLTSPLP 279 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 104/221 (47%), Gaps = 16/221 (7%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAESVHR 62 ILY+DD ++V++KP+G++ P V + R + VHR Sbjct: 82 EFPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGRYPQLAEQLACTTSRPGIVHR 141 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG + VA T A+ +L F RE +K Y+A G P G + + +R Sbjct: 142 LDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELSTLIGRHPVSR 201 Query: 123 PKQKVCYETGKPAQTEYEVVEYAAD----NTARVVLKPITGRSHQLRVHMLALGHPILGD 178 K V GK A T Y V EY + ++ +TGR+HQ+RVH+ +LG P+LGD Sbjct: 202 QKMAVVERNGKLAITRYRV-EYTGMLDGVEIGVLAVRILTGRTHQIRVHLASLGVPVLGD 260 Query: 179 RFYAS-PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y A A R LLHA L + HPA G M F AP Sbjct: 261 AVYGGARTAVAGVERQLLHAWKLCVPHPATGTPMEFTAPPP 301 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 113/239 (47%), Gaps = 22/239 (9%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------D 53 P L I+Y D ++V+NKP+GL P + V + D Sbjct: 71 EENEDLEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTD 130 Query: 54 YPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 + VHRLD T+G++V AL + A+ +L QF R K Y+A V G EG++++ Sbjct: 131 RQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINV 190 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALG 172 PL D +R + E G+ A+T Y+V++ + V ++ TGR+HQ+RVH L Sbjct: 191 PLARDQQSRARVAPSRE-GRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIRVHFSHLN 249 Query: 173 HPILGDRFYASPEAR----------AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 HP+LGDR Y + +A R LLH+ L I HP + F + P DF Sbjct: 250 HPVLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSRQWLEFISRPPRDF 308 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 105/234 (44%), Gaps = 22/234 (9%) Query: 3 MENYNPPQ------EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR---- 52 + NY PQ + I+YQD+ I+V+NKP L+ PG K V + Sbjct: 65 LNNYQEPQLKVEAQKVDFEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLHEFATN 124 Query: 53 -----DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA 107 + VHRLD TSG+++VA A + L +Q E +++Y+A V G Sbjct: 125 LSDVNGEIRPGIVHRLDKDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPHT 184 Query: 108 EGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQL 164 + ++LP+ D NR K+ V K A T E++ ++ + V TGR+HQ+ Sbjct: 185 KMRINLPIGRDNQNRTKKVVSSFNSKNAITNVELINTFVYKNEHFSIVKCILETGRTHQI 244 Query: 165 RVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 RVH+ +G+PI GD Y LHA +T H G M FK Sbjct: 245 RVHLSHIGYPIYGDPVYGKKIDDLG---QRLHAYEITFKH-LDGRLMNFKTEMP 294 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVHRLDMATS 68 +Y+D ++ ++NK +G++ P + E V + + + VHRLD TS Sbjct: 78 VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGIVHRLDKNTS 137 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G+I++A +L F+ +E KK Y A V G + G ++ + + +R K V Sbjct: 138 GLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNPNDRKKMAVV 197 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 + GK A T +EV++ + + + + + TGR+HQ+RVH+ PILGD Y + Sbjct: 198 -DNGKLAITNFEVID-SNEKFSLLKVDLETGRTHQIRVHLSHFFFPILGDSVYGRKDEY- 254 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTF 213 R +LHA ML HP + Sbjct: 255 --DRQMLHAYMLNFIHPITLEKIDV 277 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 118/270 (43%), Gaps = 58/270 (21%) Query: 8 PPQE-PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------------- 52 P+ L I+++D+ ++VVNK +G+++ P E V + Sbjct: 63 KPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQA 122 Query: 53 --------------------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREP 92 + VHRLD TSGV+VVA +A L QF R Sbjct: 123 LSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARVV 182 Query: 93 KKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTAR 151 +++YVA + G PSP++G ++ P+ D +R + V G+ A + YEV+ A+ N + Sbjct: 183 RRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLANGNASL 242 Query: 152 VVLKPITGRSHQLRVHMLALGHPILGDRFYA--------------------SPEARAMAP 191 V + TGR+HQ+RVH +GHPILGD Y + + Sbjct: 243 VEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMSTID 302 Query: 192 RLLLHAEMLTITHPAYGNSMTFK--APADF 219 R +LHA L THP G ++ F P DF Sbjct: 303 RPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 19/235 (8%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-------QRDY 54 +++ P+ + ++Y D ++VVNK +G+ PG E V + D Sbjct: 79 SLQSGIKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPELARFDG 138 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG++ VAL ++A L R F RE K+Y+ V G P AEG VD P Sbjct: 139 ERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRP-EAEGTVDHP 197 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGH 173 L D ++ + V GK A T ++ V + D + + ++ +TGR+HQ+RVHM LG Sbjct: 198 LGRDPQSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMAYLGF 257 Query: 174 PILGDRFYASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P++GD Y +A +LHA L HP G + + Sbjct: 258 PLVGDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGRMVCCEQAMP 312 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 1 MGME-NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ--- 56 M E N+ Q+ +Y+D +++VNK G+++ P + + Sbjct: 72 MEDEPNHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSKGID 131 Query: 57 --AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 V+RLDM TSG++++A A L Q +E +K+Y+A VWG EG ++ P Sbjct: 132 CKVRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAP 191 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + + K+ V E G+ + TE++V+E N V +K +TGR+HQ+RVHM LGHP Sbjct: 192 IYRTTMDSIKR-VVDERGQESITEFKVLERYK-NATMVEVKLLTGRTHQIRVHMEHLGHP 249 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y E + R LHAE L P + ++ KA Sbjct: 250 LIGDTLYG-KEDAELIDRQALHAEYLRFWQPRFKRAIEVKADLP 292 >UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q489H0_COLP3 Length = 567 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 101/229 (44%), Positives = 145/229 (63%), Gaps = 18/229 (7%) Query: 1 MGMENY----NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ 56 M ++ NP + L I++QD+H++VVNKP+GLLSVPG+ + DSV TRI+ +PQ Sbjct: 347 MEVDKNPLLINPAEGIDLEIVFQDEHVVVVNKPAGLLSVPGKSIK--DSVYTRIKTQFPQ 404 Query: 57 AE---SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 A VHRLDMATSG++++AL + A + L++QF +E K+YVA + G G + L Sbjct: 405 ASGGLIVHRLDMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICL 464 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA--- 170 PL D+ +RPKQ VC+E GK A+T ++++E DNT+++ L PITGR+HQLR+H Sbjct: 465 PLRGDFDDRPKQMVCHEHGKYAETHWQLIEEV-DNTSKLFLYPITGRTHQLRMHCAHPDG 523 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 L PI+GD Y A RL LHA+ L+ THP +TF+ +F Sbjct: 524 LNLPIIGDSLYGHS-----ADRLHLHAQRLSFTHPITKELLTFEVAENF 567 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 15/223 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 ++ P++ L I Y+D+ I++VNKP+ ++ P + + + + + + Sbjct: 62 ENDSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSGT-LANGVAWYFKEKGLKA 120 Query: 57 -AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 V+RLD TSG++V A + L+ + K Y A V G EG +DLP+ Sbjct: 121 LIRPVNRLDRGTSGLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKM-EGEGRIDLPI 176 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 + ++ V E G A T Y+VV+ ++ + + +K TGR+HQ+RVH+ +GHPI Sbjct: 177 SRKPQSGIERMV-SEEGDRAITNYKVVK-SSKRFSLLKVKIETGRTHQIRVHLSHIGHPI 234 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y S + R LHA LT HP S++ +P Sbjct: 235 VGDTLYGSSDD--YIKRQALHAYRLTFVHPLEEKSISVYSPLP 275 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 11/224 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 E P+ L ++++DDH+++VNKP+ + + P + + Sbjct: 73 QEEYGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGT-LANLVAFHLQMQGVET 131 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + +HRLD T+G +V A A + R ER K+ Y+A V G +G++D + Sbjct: 132 KVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIIDEAI 191 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHP 174 D + +++V + G A T Y++ +Y + V L+ TGR+HQ+RVHM GHP Sbjct: 192 GRDRHHATRRRV-SQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQIRVHMSHSGHP 250 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ++GD Y P LHA + HP +T +AP Sbjct: 251 LIGDVLYGG--QATYMPYQALHAMRIHFLHPITKEEITVEAPLP 292 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 9/220 (4%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD--------YPQAE 58 P L ILY+D ++MV++KP+ L+ P ++ V + R + Sbjct: 74 LTPLAIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWSTASGEQRPG 133 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHR+D T+G +++A +L++Q + ++ +++Y+A V G +D P+ D Sbjct: 134 IVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIGRD 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 NR K V + K A T V+E D + + +GR+HQ+R H+ + HPI+GD Sbjct: 194 PNNRKKMVVTAKNSKKALTNIVVIERFND-YTYIECELESGRTHQIRAHLKYINHPIVGD 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + + LHA L HP S+T A Sbjct: 253 PLYGTVADKKESFGQYLHAYQLRFIHPVTKESLTITAALP 292 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 282 bits (722), Expect = 8e-75, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 102/210 (48%), Gaps = 11/210 (5%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AESVHRLDMATS 68 ILY+DDH+++VNKP GLL P H + + + + VHRLD TS Sbjct: 87 EILYEDDHLLIVNKPVGLLLHPTERYHHVT-LDHLVSGHFFRTGLEAKVRHVHRLDQDTS 145 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 GV++ A A L RER K+ YVA V G G ++ P+ D + +++V Sbjct: 146 GVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRRRV- 204 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA 188 G PA T Y+V E +V + TGR+HQ+RVH +GHP+LGD Y R Sbjct: 205 TPNGDPAITHYQVKERF-QTATKVECQLETGRTHQIRVHFSHIGHPLLGDELYGGK--RE 261 Query: 189 MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LHA +L HP G + AP Sbjct: 262 LIKRQALHAAVLKFEHPFGGEVIEVTAPLP 291 >UniRef50_A4VJG2 Pseudouridine synthase n=18 Tax=Bacteria RepID=A4VJG2_PSEU5 Length = 244 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 106/207 (51%), Positives = 141/207 (68%), Gaps = 2/207 (0%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-DYPQAESVHRLDMATSGVIV 72 + I++QD ++V++KP+ LLSVPGR E+++D ++TR+Q YP+A VHRLD TSG+IV Sbjct: 39 IQIVHQDAALLVIDKPTLLLSVPGRAEDNRDCLVTRLQENGYPEARIVHRLDWETSGLIV 98 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 +A + REL RQF +RE +K Y A WG P G +DLPL D P +P+ V E G Sbjct: 99 LARDADSHRELSRQFHDRETEKAYTALCWGQPDADSGSIDLPLRYDPPTKPRHVVDPELG 158 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPR 192 K A T + V+E D+ +RV L PITGRSHQLRVHML++GHP+LGDR YA +A R Sbjct: 159 KHALTFWRVLERCGDH-SRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAHEQALRAHER 217 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA MLT+THP G + F++PA F Sbjct: 218 LCLHASMLTLTHPQTGARLRFESPAPF 244 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 99/246 (40%), Gaps = 35/246 (14%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DY 54 P + L +L++D+ ++V+NKP+GL+ P H V I Sbjct: 58 EPTELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGE 117 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSG+IV+A A L QF+ER + Y A G G V Sbjct: 118 ERPGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSF 177 Query: 115 LICDWPNRPKQKVCYET--------------GKPAQTEYEVVEYAADNTARVVLKPITGR 160 L +R + GK A T +EV++ + + LK TGR Sbjct: 178 LARHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQR-KSGMSYLKLKLETGR 236 Query: 161 SHQLRVHMLALGHPILGDRFYASP------------EARAMAPRLLLHAEMLTITHPAYG 208 +HQ+RVHM G PI GD Y + E PR LLHA L THP Sbjct: 237 THQIRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTK 296 Query: 209 NSMTFK 214 M F Sbjct: 297 ERMFFT 302 >UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VJ18_LACRD Length = 301 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 20/229 (8%) Query: 6 YNPPQ---------EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ 56 PP+ E + I+Y+D +++NKP+G+ +VP DS++ R++ Y + Sbjct: 61 ILPPETANDNVDVSEAPIDIIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKR 120 Query: 57 A-------ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEG 109 RLD TSG++V + A L Q ++ KK Y+A + G G Sbjct: 121 QNYENQVTHVATRLDRDTSGLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVPAEHG 180 Query: 110 LVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML 169 +D P+ D + K+ V E GK + TEY E + + ++ TGR+HQ+RVH Sbjct: 181 YIDAPIQRDPNSFVKRMVGKE-GKASVTEYWRQECNVQ-ASLIKIRLHTGRTHQIRVHFA 238 Query: 170 ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +LG P++GD+ Y E + R LH L+ P G ++T AP Sbjct: 239 SLGFPLIGDKMYG--EESGLIARQALHCYWLSFYSPFKGKNITVSAPLP 285 >UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=C7LVL1_DESBD Length = 234 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 117/214 (54%), Positives = 152/214 (71%), Gaps = 4/214 (1%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65 Y+PP EP L ++++D ++VVNKPSGLLSVPGR E DSV++R++ + A++VHRLD+ Sbjct: 8 YDPPTEPRLAVIHEDRDMVVVNKPSGLLSVPGRTPELFDSVLSRVREIHRGAQAVHRLDL 67 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+VVA + AE L++QF++R +K Y+ARV G S G VDLPLICDWPNRP Q Sbjct: 68 GTSGVLVVATRRKAETILRQQFQDRLTRKLYLARVQGVMSEDSGQVDLPLICDWPNRPMQ 127 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 VC++TGKPA T+Y+V+E ++ V+L+P TGRSHQLRVHM +LGHPILGD Y Sbjct: 128 MVCHDTGKPALTDYQVLESDGES-TLVLLRPHTGRSHQLRVHMASLGHPILGDNLYG--- 183 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 + RLLLHA L + HP G TF AP DF Sbjct: 184 EQRPGERLLLHASQLGLYHPYSGEWTTFHAPCDF 217 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 103/222 (46%), Gaps = 11/222 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP-------Q 56 E P L ++Y+DD I+V++KP+G++ P V I R + Sbjct: 81 EVALIPSYVDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPDLLKQPTDR 140 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG+I+VA L+ Q + R+ K+Y G P EG ++ P+ Sbjct: 141 PGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGRIEAPIG 200 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 D +R K V GK A TEY ++ + +PITGR+HQ+RVH A+GHPI Sbjct: 201 RDLRDRTKMSVI-AGGKEAVTEYSTIQSLG-KYTLAIARPITGRTHQIRVHFAAIGHPIA 258 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y + R LHA L + P G + +P Sbjct: 259 GDPIYGN-CRLEGLNRQFLHASRLGVVMP-NGEYKEWHSPLP 298 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 21/231 (9%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESV 60 N PQ L +Y+D +I+++NKP GL+ PG + + + R P+ + Sbjct: 76 INLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGII 135 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG++V+A T + +L ++R+ ++Y + G+ G+V+ P++ Sbjct: 136 HRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISG-GIVNYPIMRHPF 194 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 R GK + T Y+++ + V + TGR+HQ+RVHML +G+P+LGD Sbjct: 195 KRICMTTDS-LGKKSITHYKIINRFKFH-THVSFRLETGRTHQIRVHMLHIGYPLLGDPL 252 Query: 181 YASPE-------------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + R LHA+ + HP M++ A Sbjct: 253 YGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLP 303 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 104/229 (45%), Gaps = 19/229 (8%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD------------Y 54 ++ L ++Y+DD+++ VNKP G+++ P V + R Sbjct: 70 VEAEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAG 129 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA-EGLVDL 113 + VHRLD TSGVIVVA T A L F++RE +K Y+A G V+ Sbjct: 130 YRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPARVEA 189 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN----TARVVLKPITGRSHQLRVHML 169 P+ R + V + AQT + + D A V +P TGR+HQ+RVH+ Sbjct: 190 PIGRHPVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTHQIRVHLA 249 Query: 170 ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LG PILGD Y + R LHA L++ HP G + APA Sbjct: 250 HLGSPILGDAVYGRSSETML--RHALHAHFLSVPHPGTGRLLHLHAPAP 296 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 9/214 (4%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-----AESVHRLD 64 ++ L I+Y+DD ++++NK + + ++P R + Q V RLD Sbjct: 78 EDIPLCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALLSHYDKQHLASTVHIVTRLD 137 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG++++A + L +Q +++ K+ Y A V G EG++D P+ + + Sbjct: 138 RDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKSDSIIE 197 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + VC E G+ A T ++V++ V L+ TGR+HQ+RVHM +GHP+LGD Y Sbjct: 198 RTVC-EDGQRAVTHFKVIDSTYHK-THVALELETGRTHQIRVHMAHVGHPLLGDSLYGGR 255 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LH++ LT HP M+F Sbjct: 256 RDE--MKRQALHSKSLTFYHPILEKEMSFTIKLP 287 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 3 MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMT----RIQRDYPQA- 57 N P + L ILY+DD+ + +NKP+G + P + + + Sbjct: 72 EINSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPF 131 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 +HR+D TSGV+V+ + A +++ Q K Y V G +G + P+ Sbjct: 132 RPIHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIAL 191 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++++ G PA T Y+V+E D + + TGR+HQ+RVH LGHP+LG Sbjct: 192 APDSFIQRQI-SPEGSPAVTLYKVLERYQD-ASLLEFILETGRTHQIRVHCQHLGHPLLG 249 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y AR R LH+ + HP G T +AP Sbjct: 250 DDLYGGNLAR--INRQALHSSIYEFNHPLTGELTTIQAPLP 288 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 279 bits (716), Expect = 3e-74, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 9/222 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-----PQ 56 + + L ILY+D+H++V+NK + S+P R I Sbjct: 54 QVSETLLAEPVPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRAT 113 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 V RLD TSG+++VA + A L + K++Y A V G + EG VD P+ Sbjct: 114 VHLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIG 173 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + ++ V G+ A T + V A D+ V L+ TGR+HQ+RVHM LGHP+ Sbjct: 174 RHPDSIIERTV-TPDGQKAVTHFYV-TCANDDMTSVALQLETGRTHQIRVHMSYLGHPLC 231 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y R R LH+E L+ HP +M F AP Sbjct: 232 GDTLYGG--TRQEIGRQALHSEHLSFIHPLTQENMRFHAPLP 271 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 22/235 (9%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------PQA 57 PQ L I+Y+D+ I+V+NK S ++ PG + + R QA Sbjct: 76 SEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSILKISKQA 135 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V RLD T+G++++A T +A L R F+ R+ K+Y A V+G + G+V+ P+ Sbjct: 136 GIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRR 195 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + R V Y TGK A T Y VVE + +RV + TGR+HQ+RVHM + HP++G Sbjct: 196 HFAKRTFMSVHY-TGKSAVTYYSVVEEFKAH-SRVRINLKTGRTHQIRVHMAYINHPLVG 253 Query: 178 DRFYASPEARAMAP--------------RLLLHAEMLTITHPAYGNSMTFKAPAD 218 D+ Y + R LHA L + HP M + AP Sbjct: 254 DQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPLP 308 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 278 bits (713), Expect = 8e-74, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 18/232 (7%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI----------Q 51 E N + I+Y DD ++V++KP G+ S + +V + Sbjct: 80 KEEQNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKG-WSGPTVPECLEAVGIDIKTTL 138 Query: 52 RDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV 111 D + V RLD+ TSG+++V T A +K QF + KK Y A V G + + + Sbjct: 139 CDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQDKATI 198 Query: 112 DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLAL 171 D P+ + + + GKPA T ++V+E + V + TGR+HQ+RVH ++ Sbjct: 199 DAPIGRAKVSDFRFTI-TSDGKPAVTHWDVLERFSQ-ATLVSVNLETGRTHQIRVHFSSI 256 Query: 172 GHPILGDRFYASPE---ARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PAD 218 GHP++GD Y + + R LH+ LT THP G S+T K+ P D Sbjct: 257 GHPLVGDSMYGANPVLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKSHYPLD 308 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 93/216 (43%), Positives = 122/216 (56%), Gaps = 19/216 (8%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMAT 67 + L I+Y+D+ ++VVNKP+G+LSVPG+ + DSV R++R YP VHRLDMAT Sbjct: 334 DAELEIVYEDESLLVVNKPAGMLSVPGKSD--VDSVYQRVRRMYPGATGPMVVHRLDMAT 391 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG+++VA TK + L+ QF+ R K+YVA + G EG ++LPL D +RP+Q V Sbjct: 392 SGLMLVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQVV 451 Query: 128 CYETGKPAQTEYEVVEYAADNT------ARVVLKPITGRSHQLRVHMLA---LGHPILGD 178 GKPA T+Y V+ Y V P TGR+HQLRVH L PI+GD Sbjct: 452 DVVHGKPAVTDYRVLRYGGCKGGLRTTPTVVSFVPKTGRTHQLRVHSAHPLGLNAPIVGD 511 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 Y A RL LHAE L THP G M + Sbjct: 512 ELYGKK-----ADRLYLHAEYLGFTHPVSGVYMEVE 542 >UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A n=20 Tax=Proteobacteria RepID=RLUA_HAEDU Length = 222 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 3/222 (1%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + Y+PP P+L +Y+D+HI+V+NKPSGLLSVPG E+ DSVMTR+Q+ Y AE Sbjct: 1 MALIEYHPPLNPFLEEVYRDNHIVVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEPA 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA---EGLVDLPLIC 117 HRLDMATSG+I++AL+K AE+ELKRQFR+REPKK Y+A +WG G ++ PLIC Sbjct: 61 HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 DW NRP+QK+CYE GK A T YEV+E+ A+NT RV PITGRSHQLRVH LALGHPI+G Sbjct: 121 DWENRPRQKICYERGKKATTHYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPIIG 180 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D+FYA+P A+++APRL LHAE LTI HP MTF F Sbjct: 181 DKFYANPLAKSLAPRLCLHAESLTIAHPISAELMTFNTEPTF 222 >UniRef50_Q28K21 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=Q28K21_JANSC Length = 217 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 2/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M ++ P L I+++D +++VNKP+GLLSVPG+ E D ++ R++ +P+ V Sbjct: 1 MSVDFVYAPPTDPLDIIHEDHDLLLVNKPAGLLSVPGKGEHLSDCLIARLKIAFPEVLLV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLDM TSGV+V A T A+R L QF +R KK YVARVWG + +G +DLPLI DWP Sbjct: 61 HRLDMDTSGVMVFARTPHAQRHLGLQFEKRHTKKAYVARVWGEVTDKDGHIDLPLIVDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRP Q V +ETGKPAQT++ + D T R+ L P TGRSHQLRVHMLA+GHPILGD F Sbjct: 121 NRPLQHVNHETGKPAQTDWRRI-RVEDGTTRMRLFPKTGRSHQLRVHMLAIGHPILGDPF 179 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 YA+ A A PRL+LHAE L + HP G MTF+A F Sbjct: 180 YATGPALA-FPRLMLHAESLKLRHPDGGIGMTFRARVPF 217 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 8/218 (3%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------DYPQAESV 60 P + + ++Y+D++++VVNKP GL+ PG + + + Y + V Sbjct: 70 IEPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYLNSNCDHYIRPGLV 129 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HR+D TSG++V+A + L Q ++ + Y A V G A L+D P+ D Sbjct: 130 HRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLIDAPIGPDKS 189 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 N V KPA+T +E +E N++ + K TGR+HQ+RVH L P+ GD Sbjct: 190 NTKIMTVNQARSKPARTHFEKIETYI-NSSLICCKLETGRTHQIRVHALHANIPLHGDPQ 248 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y P L A L HP Y M F+ P Sbjct: 249 YGHPSDTDK-TGQYLCAARLEFVHPKYLKLMQFEIPLP 285 >UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q0VQA6_ALCBS Length = 229 Score = 276 bits (708), Expect = 3e-73, Method: Composition-based stats. Identities = 104/204 (50%), Positives = 133/204 (65%), Gaps = 1/204 (0%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALT 76 +Y+D+H++++NKP+ LLSVPGR E+KD + R+Q+ YP VHRLD+ TSG++V LT Sbjct: 26 IYRDEHLLLINKPAYLLSVPGRAPENKDCAIRRLQQRYPDIRLVHRLDLDTSGIMVFGLT 85 Query: 77 KAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 136 A+ +L R F+ R KK+Y A V G G +DLPLI DWP RP QKVC+ETGK A Sbjct: 86 AFAQSKLSRLFQLRTVKKRYQAIVHGLVEKNAGSIDLPLIADWPKRPLQKVCHETGKNAL 145 Query: 137 TEYEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 T Y V+E N R+ L P+TGRSHQLR+H LGHPI+G YA E A++PRLLL Sbjct: 146 THYRVLERDIPGNRTRLALSPVTGRSHQLRIHCRELGHPIIGCDMYAPAEIEALSPRLLL 205 Query: 196 HAEMLTITHPAYGNSMTFKAPADF 219 HAE L HP G F +P F Sbjct: 206 HAEWLAFNHPLTGLWQEFTSPCPF 229 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 275 bits (706), Expect = 6e-73, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 10/223 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 + PQE ++Y+D ++V+NK G++S P + KD++ Q Sbjct: 74 EEASQFEPQEIPFNVVYEDIDVIVINKEPGIVSHPTKSHP-KDTIANAAQNYLEKKGVAC 132 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + V+RLDM TSG++V+A + +Q + E K+YVA V G EG +D + Sbjct: 133 RIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVANEGEIDGAI 192 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 K+ V + G+ + T++ V+E AD + + +TGR+HQ+RVHM ++GHP+ Sbjct: 193 YRSSDETIKR-VVDDRGQQSLTKFTVLERYAD-ATMLEVSLLTGRTHQIRVHMESIGHPM 250 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 LGD Y + + R LHA L+ P Y + +A Sbjct: 251 LGDHLYGYVDTE-LIRRQALHASYLSFLQPRYKEKIEVRASLP 292 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 275 bits (705), Expect = 6e-73, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 10/221 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------A 57 + P++ L I+Y+D + +VVNKP+G +P H +++ + Y + Sbjct: 93 SDAITPEKLPLDIIYEDAYCLVVNKPAGQACLPSMNHRH-NTLANGLTYYYQKNSIPSTV 151 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V RLD+ TSG+++VA + R +E + Y A V G SP G+VD P+ Sbjct: 152 HIVTRLDVNTSGLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSPTSGIVDAPIAR 211 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++ V GK A+T Y V+ YA + V +K TGR+HQ+RVH LGH + G Sbjct: 212 KEGSIIERTVDMRNGKYAKTNYRVL-YADSIASWVEIKLETGRTHQIRVHFQYLGHSLYG 270 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + + R LH + +T+ HP + +A Sbjct: 271 DNLYGGSKDIML--RQALHCKQITMMHPIKNQPIQLEASLP 309 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 275 bits (704), Expect = 9e-73, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 10/221 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------A 57 P I Y+DD +++VNKP+G P ++DS+ Y Q Sbjct: 70 SQSIRPVPGPFDIAYEDDDLLLVNKPAGTPVHPSPGH-YEDSLANYSAWQYAQRREQLVF 128 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 V+RLD TSG++ VA A+ L +Q ++ Y A V G PSPA G +DLP+ Sbjct: 129 RPVNRLDRGTSGLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCGAPSPAAGTIDLPIGR 188 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 + K++V + + A T YE V + ++ TGR+HQ+RVH LG P+ G Sbjct: 189 TPGSVLKRRVDPQGAR-AVTHYETV-RVNGAYTLLKIRLETGRTHQIRVHFAHLGCPLFG 246 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + E R + LH+ + + HP G + P Sbjct: 247 DFLYGT-ERRDVVEGHALHSGEIRLLHPISGEEIRCSVPLP 286 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 63/274 (22%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR------DYP------ 55 ++ L I+Y+D H++VVNKP+ ++ P V + DY Sbjct: 142 EAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDD 201 Query: 56 ------------------------QAESVHRLDMATSGVIVVALTKAAERELKRQFRERE 91 + VHRLD T+G++VVA + + L QF+ Sbjct: 202 DSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT 261 Query: 92 PKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK-----VCYETGKPAQTEYEVVEYA- 145 ++ YV+ G PSP +G +++P+ D NR + V + A + Y+V+E Sbjct: 262 IERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFA 321 Query: 146 ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM---------------- 189 +A V + TGR+HQ+R H +G P+LGD Y ++ A+ Sbjct: 322 GGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEII 381 Query: 190 -----APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA +L THP G + F P Sbjct: 382 ELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPP 415 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 17/224 (7%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQAESVH 61 Q+ + ILY+D+ + VV KPSG+ S G + V + + + VH Sbjct: 75 QDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIGGVERPGIVH 134 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T G++V+A + ++L F+ +E K Y A V+G E ++ + N Sbjct: 135 RLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIETFIRRHPTN 194 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 R K +V E GK A T+Y +E N + + +K TGR+HQ+RVHM +GHPI+GD Y Sbjct: 195 RLKFEVANE-GKLAITKYS-LEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHPIVGDTLY 252 Query: 182 ASPE-------ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + R LL A L+ HP M F+ Sbjct: 253 GYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPMEFEIDMP 296 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 274 bits (702), Expect = 1e-72, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 18/220 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP----------QAES 59 + L + ++D +M ++K +GL P E V I + Sbjct: 78 EPIPLDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIYAYGRDSLAHVQGDDRPGI 137 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLDM TSG+++ A L+ R+ + ++Y+ V G+ + G +D P+ Sbjct: 138 VHRLDMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVHGNIAFDTGQIDEPIGRVG 197 Query: 120 PNRPKQKVC-YETGKPAQTEYEVVEYAA-----DNTARVVLKPITGRSHQLRVHMLALGH 173 +R + K+ T + A T + V+E + + + TGR+HQ+RVHM +GH Sbjct: 198 DDRLRMKISYRPTARNALTTFTVLERFEAGRADNGYTLLECRLYTGRTHQIRVHMEFIGH 257 Query: 174 PILGDRFY--ASPEARAMAPRLLLHAEMLTITHPAYGNSM 211 +GD Y + + R LH+ L+ HP G+ + Sbjct: 258 CCVGDPLYRWGNEQVNLELSRQFLHSYSLSFNHPMTGDDI 297 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 274 bits (702), Expect = 1e-72, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 12/206 (5%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAESVHRLDM 65 L I+Y+D+H +++NKP+G S+P + +++ I+ Y Q V RLD Sbjct: 75 DLDIVYEDEHFLILNKPAGYASIPSAIHS--NTIANFIKAYYIKQDYPNKQVHIVTRLDR 132 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS-PAEGLVDLPLICDWPNRPK 124 TSG+++ A A L +Q ++R K+Y A V G P +G + P+ + Sbjct: 133 DTSGLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGRTDDSIIT 192 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + V GK A+T Y+V+ +N + V + TGR+HQ+RVH LG P+LGD Y Sbjct: 193 RTV-TPKGKYAKTSYKVIARYPENVSLVDITLHTGRTHQIRVHFAHLGFPLLGDDLYGGR 251 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNS 210 R LH L+ THP + Sbjct: 252 LD-LGMTRQALHCHHLSFTHPFTESR 276 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 11/220 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 E P+ L ILY+D H++ VNKP G+L P E ++ + + Sbjct: 72 SQETQVVPERMELNILYEDAHLLAVNKPPGMLVHP-LTNETSGTLANGVLYHWLQQGTID 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLD TSG++++A +++L+ Q ++ + ++Y+A V G P +G++ P+ Sbjct: 131 RFRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPI 190 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 + + K+ + GK A + Y+V+ + V ++ TGR+HQ+RVHM +GHP+ Sbjct: 191 ALEEGSFIKRMI-SPAGKEAISHYQVLRTFNQ-ASLVRVELETGRTHQVRVHMAHMGHPL 248 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 LGD Y + R LH L HP G+ + Sbjct: 249 LGDSLYGGDTSN--IKRQALHCAYLAFNHPVQGSRIKISC 286 >UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Tax=Magnoliophyta RepID=PUS2_ORYSJ Length = 445 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 69/282 (24%), Positives = 111/282 (39%), Gaps = 71/282 (25%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 P++ L I+Y+DDH++VVNKP+ ++ P + V + Sbjct: 134 EPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSID 193 Query: 53 ------------------------------DYPQAESVHRLDMATSGVIVVALTKAAERE 82 + VHRLD TSG++VVA + + + Sbjct: 194 DECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQ 253 Query: 83 LKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTE 138 L QF+ ++ Y++ G P+P G +++P+ D NR + +G + A + Sbjct: 254 LAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAASR 313 Query: 139 YEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM-------- 189 Y+V E +A V + TGR+HQ+R H LG P+LGD Y ++ A+ Sbjct: 314 YKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTP 373 Query: 190 -------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA +L HP G + F P Sbjct: 374 SRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPP 415 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 18/231 (7%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DYP 55 P L I Y+DD+++V++K +GL+ P + Sbjct: 78 IMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALVAHCGYEHLGLLQGDD 137 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + VHRLDM T+G++V A ++ L+ R R ++Y+ V G+ +P EG + + Sbjct: 138 RPGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVLVQGYVTPDEGTITTGI 197 Query: 116 ICDWPNRPKQKVC-YETGKPAQTEYEVVEYAA-----DNTARVVLKPITGRSHQLRVHML 169 NR K + + A T ++ +E D + + TGR+HQ+RVHM Sbjct: 198 ARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSLLECHLYTGRTHQIRVHMR 257 Query: 170 ALGHPILGDRFYA--SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GH ++GD Y R LH+ ++ HP + F Sbjct: 258 YVGHSVVGDPLYGRKGDALNQGLQRQFLHSWRMSFDHPITHEHLQFCDKLP 308 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 273 bits (699), Expect = 3e-72, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 11/219 (5%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAES------ 59 P + L I+++D+H++++NKP L ++P R E + S+ I Y + Sbjct: 75 SIKPYKIKLHIIFEDEHVIIINKPPHLPTIPTR-NEGEPSLAGAILAYYIENGIPSTFHA 133 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 V RLD TSG+++VA + + + E K+ YVA V G S +DLP+ Sbjct: 134 VSRLDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDDYNTIDLPISRKT 193 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + +++V E GK A T YEV++ + L TGR+HQ+RVHM A+GHP+LGD Sbjct: 194 TSIIEREV-NEFGKSAITHYEVLKRY-SGATLLQLTLETGRTHQIRVHMSAIGHPLLGDT 251 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y R LH+ L+ HP TF P Sbjct: 252 LYGGD--VRYIDRQALHSHQLSFFHPINKREYTFHCPIP 288 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 29/239 (12%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVH---- 61 + P++ + I+Y+D+ ++ +NK G++ P + + + V Sbjct: 71 FIQPEDIPIDIIYEDEFLIALNKQPGIVVHPTCSHPGGT-LANAVAFHLQKKGIVKKIRP 129 Query: 62 --RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 RLD TSG+I+ A + L RQ ++ K+Y+ V G +DLP+ Sbjct: 130 VIRLDRDTSGIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLENDNGTIDLPIARKP 189 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + + + G PA T Y V+E + V + TGR+HQ+RVH A+GHP+LGD Sbjct: 190 GSIMLRHI-SPDGDPAVTHYTVLERL-NGATLVKFRLETGRTHQIRVHCQAIGHPLLGDT 247 Query: 180 FY----------ASPEA----------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + R LH++ HP + AP Sbjct: 248 LYPFEDTPYSLSGNNPHITQANTPSITSGIITRQALHSQRAVFLHPFTKKILEITAPIP 306 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 11/216 (5%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHR 62 + + ILY+D++ +VV+K +G+ SVPG+ + + +++ R++ V R Sbjct: 75 SDLPIKILYEDENWLVVDKVAGVTSVPGKADR-ETTMVNRVKGYLISEGAEDLVPHVVTR 133 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSGV ++A + A L +Q + K+Y A V G G +D P+ + Sbjct: 134 LDRFTSGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDDHGFIDAPIGRMDNDF 193 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 +++V G+P+QTEY VV + V ++ TGR+HQ+RVH +GHP++GD Y Sbjct: 194 IRREV-RADGRPSQTEYWVVNRMPNQ-TLVKVQLHTGRTHQIRVHFKYIGHPLIGDEIYG 251 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 P R R LHA L P ++P Sbjct: 252 GPMDR-GIERQALHAYWLEFYDPFSEIKRHIQSPLP 286 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 13/227 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE--- 58 P + L I+Y+D+ I+V+NK +G+ P + +++ + + + Sbjct: 57 EDSGNIVPVKLPLSIVYEDEDILVINKDAGVPIHPSQGHYD-NTLANAVSWYFHEKGEAF 115 Query: 59 ---SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 ++RLD T+G++V+A + L Q R +++Y A V GH +P EG VD P+ Sbjct: 116 TYRVINRLDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGH-TPEEGTVDSPI 174 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADN-TARVVLKPITGRSHQLRVHMLALGHP 174 + +++V +ETG+ A T + + Y + + V L TGR+HQ+RVHM ++GHP Sbjct: 175 ARAEGSTIERRVDHETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRSIGHP 234 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 + GD Y R LH+ +L HP G M F A P D Sbjct: 235 LPGDFLYCPD--YRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDM 279 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 272 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 10/224 (4%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------ 55 + PQ+ L ++Y+D+ ++V+NK SG++ P +++ I Sbjct: 67 EECEHIEPQDIPLDVIYEDECMLVLNKQSGIVVHPTSYHPD-NTIANGIVYYLKQKGVTK 125 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + V RLD TSG+I+ A + + L +Q KK+Y+ V G P EG ++LP+ Sbjct: 126 KVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNEGTINLPI 185 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTA-RVVLKPITGRSHQLRVHMLALGHP 174 + + + E G P+ T Y++++ + + + K TGR+HQ+RVH A+G P Sbjct: 186 ARKPGSIMLRHI-SEEGAPSITHYKILKTFPSHNSALLSFKLETGRTHQIRVHCKAMGFP 244 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 I GD Y S R LH+ I HP + FKA Sbjct: 245 IYGDTLY-SDNTNLFISRQALHSYRTEIIHPVTLKGVIFKAELP 287 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 272 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 9/216 (4%) Query: 8 PPQEPW-LVILYQDDHIMVVNKPSGLLSVP----GRLEEHKDSVMTRIQRDYPQAESVHR 62 P + ILY+DDH+++ NKP+G++ P H + + + + VHR Sbjct: 87 PNTPMPSIDILYEDDHLLIANKPAGMMVHPIKQETDTLVHALAAVLAARGEQTSVHPVHR 146 Query: 63 LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122 LD TSG I+VA + + R RE ++Y+A G S G +D P+ D + Sbjct: 147 LDKDTSGAILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGRDARHP 206 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182 K++V E+G PA T YEV + ++ + TGR+HQ+RVH +GHP+ GD Y Sbjct: 207 TKRRVV-ESGDPAITHYEV-QQTSEEMTLARVWLETGRTHQIRVHFAHIGHPLAGDTMYG 264 Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 AR + R LHA L+ HP + +AP Sbjct: 265 G--ARGLLRRQALHASKLSFLHPLLEKEIVVEAPIP 298 >UniRef50_C2L1H2 Pseudouridine synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2L1H2_9FIRM Length = 335 Score = 272 bits (697), Expect = 6e-72, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 33/251 (13%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---- 56 M EN PP + L I+Y+D I++++KP+ L P K + Sbjct: 77 MEEENSAPPYDFPLDIVYEDRDILLLDKPARLPCHPSPGHFEKTLAGAIVFYQMQNSSAS 136 Query: 57 ---AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLV-- 111 +HRLD+ TSG+I++A + A L + +E ++ Y+A G+P + G + Sbjct: 137 SFVCHFIHRLDLDTSGLILLAKNRLAASVLNKDMKEGRIQRSYLAFCQGNPEFSLGEIQG 196 Query: 112 ------------------DLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARV 152 P+ + + V ++ G+ A + + V+ Y + N + + Sbjct: 197 FTRLEEKKKKEFNYAFAISAPIARVEEEKMLRTVNFQKGQEALSYFNVLNYFPEKNYSLL 256 Query: 153 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-----RAMAPRLLLHAEMLTITHPAY 207 L+ TGR+HQ+RVH+ L P+LGD Y + E R LH+ ++ THP Sbjct: 257 QLQLATGRTHQIRVHLSYLSCPLLGDSLYGNGEESVFSQNIGLSRQALHSYSISFTHPIR 316 Query: 208 GNSMTFKAPAD 218 M F+ Sbjct: 317 KEKMFFQRELP 327 >UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus RepID=Q1WS43_LACS1 Length = 296 Score = 272 bits (697), Expect = 6e-72, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 11/213 (5%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHRLDM 65 L I+Y+D + +VV+KP L SVPG D+++ R++ Q + RLD Sbjct: 76 PLDIIYEDSNWLVVDKPPLLSSVPGPSNRT-DTLVNRVKFHLWQQKSKDLVPHVITRLDR 134 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSG+++VA + A+ + +Q E K+Y+A V G + G++D PL + Sbjct: 135 DTSGLVLVAKHRFAQGLINKQVEEHSIDKKYLAVVEGIITEKHGIIDKPLGPRENGIGQM 194 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 +TGK A+TEY V EY D V K TGR+HQ+R H ++ H ++GD Y Sbjct: 195 --VTDTGKIAKTEYWVREYLGDKATLVECKLHTGRTHQIRAHFSSINHALVGDELYGGRL 252 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA L P FK+ Sbjct: 253 D-WGLERQALHAYQLAYVDPFTQEEKLFKSEMP 284 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 12/220 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE------ 58 + P E L I+Y+DD ++VVNKP + + E D+ +Q + Sbjct: 69 DKIPTYEYDLEIIYEDDFLLVVNKPVDMKTHANDSYET-DTCANAVQYYLEKTGQDANAL 127 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 +VHRLD TSG+++ A K A L Q R + Y+A V G ++ P+ D Sbjct: 128 AVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQTINKPIGED 187 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHPILG 177 + ++++ G+PA T +V+E + NT+ V + TGR+HQ+RVH+ +GHPI+G Sbjct: 188 RHHGSRRQI-SPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIG 246 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 D Y A R++LHAE L + HP G M F APA Sbjct: 247 DTLYGGS---PRANRIMLHAEKLHLNHPFKGKEMNFSAPA 283 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 272 bits (696), Expect = 9e-72, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 12/225 (5%) Query: 1 MGMENY-NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ--- 56 + NY P++ + +LY+DD ++V+NKP+ L P + + ++ + Q Sbjct: 88 LEDTNYGVQPEKGAIEVLYEDDFLLVLNKPAHQLVHPT-GQTTRGTMANYLAYYLKQRNV 146 Query: 57 ---AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 VHRLD TSG ++ A ++ L++Q +ER K+ Y A V G P G +D Sbjct: 147 VSAIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPPSGTIDA 206 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ ++ + E G+ + T Y+ + + + + L TGR+HQ+R+H+ LG+ Sbjct: 207 PIGPHPSLANRRAI-NEHGEQSITHYQTLRSFPE-ISLLKLNLDTGRTHQIRLHLAHLGY 264 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 PI+GDR Y R LHA ++ H + + AP Sbjct: 265 PIIGDRMYGVRS--PWINRQALHAYDVSFRHLKENHEIAVHAPLP 307 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 11/220 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ------AE 58 + P + +LY+D+ I+VVNKP+ + P +++ + Sbjct: 72 DGILPTPLNIPVLYEDEDILVVNKPADMPVHPSLGNYT-NTLANGVAAYLETKGESCPFR 130 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 ++RLD TSG +++A + L Q R R+ + Y+A V G P G + P+ Sbjct: 131 CINRLDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQ-SGTISAPISRA 189 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + ++++ +E G+ A T Y+++E +N + + + TGR+HQ+RVHM +GHP+ D Sbjct: 190 ADSVIERRIDFENGESAITHYQLLE-VKNNHSLLEIHLETGRTHQIRVHMGYIGHPLPAD 248 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y R LH+ L HP G M AP Sbjct: 249 YLYNP--VYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVP 286 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 23/226 (10%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-----PQAESVHRLD 64 + L ++++D H++V++KP+GL+ P + + P+A VHRLD Sbjct: 115 EAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAHLPRAGIVHRLD 174 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++VA + A L R R+ K++Y+A V G ++D PL D +R + Sbjct: 175 KDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDAPLGRDPVSRVR 234 Query: 125 QKVCYETGKPAQTEYEVVE----------------YAADNTARVVLKPITGRSHQLRVHM 168 + +GKPA+T+ + A + V + TGR+HQ+RVH+ Sbjct: 235 MAIV-ASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLHTGRTHQIRVHL 293 Query: 169 LALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 + GHP+L D Y A R LHA L + HP G + F+ Sbjct: 294 ASRGHPLLADAMYGGAPA-FGLQRQALHAARLHLLHPIDGRPLAFE 338 >UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4_MAIZE Length = 439 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 105/282 (37%), Gaps = 71/282 (25%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------------- 52 ++ L I+Y+DDH++VVNKP+ ++ P V + Sbjct: 132 EAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLARSSAG 191 Query: 53 ------------------------------DYPQAESVHRLDMATSGVIVVALTKAAERE 82 + VHRLD TSG++VVA + + Sbjct: 192 DECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHAR 251 Query: 83 LKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTE 138 L QF+ ++ Y++ G P+P G ++ + D NR + +G + A + Sbjct: 252 LAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAGSGHRYARNAASR 311 Query: 139 YEVVEYA-ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAM-------- 189 Y+V E +A V + TGR+HQ+R H +G P+LGD Y ++ A+ Sbjct: 312 YKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRSP 371 Query: 190 -------------APRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA L HP G + F P Sbjct: 372 SKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPP 413 >UniRef50_A8UMR7 Pseudouridine synthase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMR7_9FLAO Length = 561 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 96/215 (44%), Positives = 131/215 (60%), Gaps = 14/215 (6%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMAT 67 L I+Y+DD ++V+NKP LSVPG+ + DSV+TR+Q P +HRLDM+T Sbjct: 355 NGELEIIYEDDFLVVLNKPHEFLSVPGKTIK--DSVLTRMQNYLPDATGPLLLHRLDMST 412 Query: 68 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127 SG+++VA + + L++QF +R KK+YVA + G P+EG +DLPL D NRP+Q V Sbjct: 413 SGLLLVAKNERTHKNLQKQFIKRIVKKRYVALLNGKLEPSEGTIDLPLRVDLNNRPRQLV 472 Query: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASP 184 C E GK A+T+YEV+E +N R+ PITGR+HQLRVH L PI+GD Y + Sbjct: 473 CDEHGKLAKTKYEVIE-IKNNKTRIHFYPITGRTHQLRVHAAHYKGLNMPIIGDDLYGTA 531 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 RL LHAEML+ HP ++F A F Sbjct: 532 S-----NRLHLHAEMLSFEHPVKREWVSFSCKAPF 561 >UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID=Q12L72_SHEDO Length = 230 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 107/219 (48%), Positives = 136/219 (62%), Gaps = 2/219 (0%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 M + NY PP PWL I Y D I+V+NKPSGLLS PGR E D+ +TR+QR YP+ + Sbjct: 14 MQVFNYQPPSIPWLDIRYLDRDIIVINKPSGLLSNPGRAPETYDTAITRLQRLYPETILI 73 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSG+++ A K AE LK QF+ R+ KK Y+A V G +G V+ PL D Sbjct: 74 HRLDCDTSGIMIFARNKKAESNLKTQFQNRQAKKVYIAEVSGCFEHQDGKVNFPLGPDPM 133 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 P Q+V E+GKPA T Y ++E+ A T+ V LKP TGR+HQLRVHM ALGH I+GD F Sbjct: 134 TPPFQQVI-ESGKPALTYYRLLEHRAS-TSLVELKPHTGRTHQLRVHMKALGHTIIGDEF 191 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A + RL LHA+ LT+ HP + F + F Sbjct: 192 YGDETVIAASHRLNLHAQSLTLLHPFKQIEIQFFSQHPF 230 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 20/232 (8%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAE 58 +N + +L ++Y+DD I+V+NK + PG + + RD P+A Sbjct: 75 KNDYQAENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLHRDSTFFNIPRAG 134 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD T+G++V+A + L Q + ++ ++Y A V+G G + +I + Sbjct: 135 IVHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKVISG-GTIVKSIIRN 193 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R V + GK A T Y +++ + + + TGR+HQ+R HML + P++GD Sbjct: 194 PIKRTTMIV-NKCGKRAITHYRILKRFTHH-THLKIILETGRTHQIRTHMLYINFPLVGD 251 Query: 179 RFYASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 + Y + E PR LHA L + HP + M + + Sbjct: 252 KTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNSTLP 303 >UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID=B9DS29_STRU0 Length = 301 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 12/209 (5%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQAES 59 L I+Y+DDH +V+NKP G S+P + +++ I+ Y Q Sbjct: 69 LEAVPHPLDIVYEDDHFLVLNKPVGYASIPSAIHS--NTIANFIKAYYFEQNYPNKQVHI 126 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPS-PAEGLVDLPLICD 118 V RLD TSG+++ A A L +Q ++R +K+Y A V G+ P G + P+ Sbjct: 127 VTRLDRDTSGLMLFAKHGYAHARLDKQLQKRSIEKRYFALVSGNGQLPDFGEIVEPIGRS 186 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + + V GK A+T YEVV A+N V +K TGR+HQ+RVH +G P+LGD Sbjct: 187 KDSIITRTVD-PMGKYAKTTYEVVARFAENVHLVDIKLHTGRTHQIRVHFSHIGFPLLGD 245 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAY 207 Y R LH L+ +P Sbjct: 246 DLYGGRMD-LGIERQALHCHFLSFFNPFT 273 >UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=Q5E092_VIBF1 Length = 576 Score = 268 bits (688), Expect = 7e-71, Method: Composition-based stats. Identities = 87/218 (39%), Positives = 123/218 (56%), Gaps = 14/218 (6%) Query: 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLD 64 P L I+Y+DD +++VNKP LSV G+ DSV RIQ YP VHRLD Sbjct: 367 PSYGKELEIVYEDDVLVIVNKPVEFLSVSGK--YISDSVHARIQARYPNATGPLIVHRLD 424 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 M+TSG++V+ LT + +++++QF ER +K+Y A + G+ G ++LPL D +RP+ Sbjct: 425 MSTSGLLVLTLTAESNKQVQKQFIERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRPR 484 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFY 181 Q V +++G+ A+T Y+V+ +V L P TGR+HQLRVH L PI+GD Y Sbjct: 485 QMVNHKSGRKAETHYQVIAQEGKR-TKVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLY 543 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHA L HP ++ F P DF Sbjct: 544 GFK-----ADRLHLHAGYLKFKHPTTNETVEFSCPEDF 576 >UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1W0M0_9BACT Length = 566 Score = 268 bits (688), Expect = 7e-71, Method: Composition-based stats. Identities = 93/214 (43%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---QAESVHRLDMATSGV 70 L ++Y+DD ++VV+KP+G+LSVPGR + SV + ++ P + SVHRLDMATSG+ Sbjct: 351 LHVVYEDDALIVVDKPAGILSVPGRSQRP--SVYSILRSQMPSSVELFSVHRLDMATSGL 408 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +++A R L+RQFR +K+Y+A + G S EG+V LPL D +RP+Q V +E Sbjct: 409 LILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQVVDWE 468 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEAR 187 GK A T Y V+ V L P TGR+HQLR+H L PILGD Y Sbjct: 469 HGKKAVTSYRVL-NVRHGKTWVALFPETGRTHQLRMHCAHAEGLNCPILGDPLYGH---- 523 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 A RL LHA +T HP G +T A PADF Sbjct: 524 -HANRLYLHATSITFEHPISGQLLTLHAQPPADF 556 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 268 bits (687), Expect = 8e-71, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 3/207 (1%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVI 71 L ILY+DD ++ V+KP GL ++P R + + VHRLD SGV+ Sbjct: 1 MELPILYEDDDLLAVHKPEGLAAIPERDPSRPSARRLLEAARGERLWVVHRLDKEASGVL 60 Query: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 + A A R + F +R+ +K Y A V G P +G + P+ + V E Sbjct: 61 LFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPIR--MYGSGRMGVDPER 118 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAP 191 GKP++T Y V+EY + + + P+TGR HQ+RVH +GHPI+GD Y + P Sbjct: 119 GKPSETRYRVLEYLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDPRYGDRSVQQRYP 178 Query: 192 RLLLHAEMLTITHPAYGNSMTFKAPAD 218 RL+LHA + HP G + AP Sbjct: 179 RLMLHALSIRFRHP-NGQELEIVAPVP 204 >UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales RepID=C5WJF2_STRDG Length = 341 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 5/202 (2%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AESVHRLDMATSGVIVV 73 LY+DDH+++VNKP G+ + E + +++ + + VHRLDM TSGVIV Sbjct: 128 DCLYEDDHLIIVNKPEGMKTHGN--EPTELALLNHVSAYTGRTCYVVHRLDMETSGVIVF 185 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A T L R +RE + Y A V G S E P+ +R K+ V + G+ Sbjct: 186 AKTPFILPILNRLLEKREISRDYWALVHGTLSSKEVSYREPIGRHRHDRRKRVVDVKQGQ 245 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193 A T+ ++++ N + + + TGR+HQ+RVH+ GH +LGD Y+ +A PRL Sbjct: 246 KAVTDVKLLKSFKQNVSLINCRLQTGRTHQIRVHLSHHGHALLGDPLYSKGKAE--CPRL 303 Query: 194 LLHAEMLTITHPAYGNSMTFKA 215 +LHA L + HP + +A Sbjct: 304 MLHAHQLRLRHPLTQEMICVQA 325 >UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q1CZL9_MYXXD Length = 559 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 12/212 (5%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGV 70 L I+++D+ ++VV KP GLLSVP + +DSV+ R++ P+A HRLD+ TSG+ Sbjct: 354 LDIVFEDEWLVVVEKPEGLLSVPAKDVSVEDSVLARLRARAPEAAGTMLAHRLDLDTSGL 413 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE 130 +V A L+RQF RE K+Y A V G+ G +D P+ D +RP+Q Sbjct: 414 LVAAKDARTYAALQRQFAGREVHKRYAAWVEGNVQGERGTIDFPMRVDLDDRPRQIHDPV 473 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEAR 187 GKPA TE+ V+E + +V L P+TGR+HQLRVH LG PI+GDR Y P Sbjct: 474 HGKPAVTEWHVLERSHGR-TKVALFPLTGRTHQLRVHAAHPLGLGAPIVGDRLYGHPG-- 530 Query: 188 AMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 PRL LHAE L+ HP G +T + PA F Sbjct: 531 ---PRLHLHAEALSFQHPVTGQRLTLERPAPF 559 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 23/228 (10%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--------QAESVH 61 Q+ L I+++D+H++V+NK + ++ P V+ + + VH Sbjct: 69 QDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGT-VVNALAYYLANRSESISFRPGIVH 127 Query: 62 RLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPN 121 RLD T+GV+VVA T L F R+ KK Y+A G+P ++D P+ + Sbjct: 128 RLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNP-GKHVVIDKPIGRHPLH 186 Query: 122 RPKQKVCYE------TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 R + +V + TG+ A + + + + V ++ TGR+HQ+RVH+ PI Sbjct: 187 RQRMRVVPDPHQKNSTGRRALSYVDTLA-FDGKLSLVQVRIETGRTHQIRVHLQDRHTPI 245 Query: 176 LGDRFYASPEARAMAP------RLLLHAEMLTITHPAYGNSMTFKAPA 217 GD Y + R LLHA L I HP G M FKA Sbjct: 246 YGDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASL 293 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 12/224 (5%) Query: 2 GMENYNPPQE-PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-----DYP 55 +Y P + +Y+D+H++V++KP+G++ P E I + Sbjct: 83 KESSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEF 142 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 + ++RLDM T+G++++A + + + + + +K+Y+A V G P EG++D P+ Sbjct: 143 KIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAPI 202 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAAD-NTARVVLKPITGRSHQLRVHMLALGHP 174 +Q E GKP+ TEY+VV + + N + + ++ TGR+HQ+RVH+ +G P Sbjct: 203 KAVEGEPRRQ--VMEGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQIRVHLKHIGCP 260 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 ILGD FY E+ A R LLH+ L THP + A Sbjct: 261 ILGDEFYGGKES---ADRQLLHSRYLRFTHPVSKKIVELTANLP 301 >UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus RepID=Q38W13_LACSS Length = 300 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 12 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHRLD 64 + +LY+DD+ +VVNKP+GL ++PG D+++ RI+ + Q + RLD Sbjct: 77 VPIKVLYEDDYWLVVNKPAGLATIPGPTNTT-DTLLNRIKGYWQQNGATDLVPHIITRLD 135 Query: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 124 TSG+++ A + A+ L+ Q + + +K Y+A V G P G + P+ + Sbjct: 136 FDTSGIVLAAKHQVAQSLLQPQIEQHQLQKFYLAVVAGTGLPEFGTIKAPIGRVGVEPRR 195 Query: 125 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184 + + G+ A T+Y + + + ++ TGR+HQ+RVH+ L HP++GD+ Y Sbjct: 196 RVI--ADGQSAWTDYWRLAQD-ERLTVLKVQIHTGRTHQIRVHLSDLDHPLVGDQLY-EG 251 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R LHA LT P F AP Sbjct: 252 PLGWGIDRQALHAYQLTFNDPFSQQKRQFTAPIP 285 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 101/216 (46%), Gaps = 13/216 (6%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--------PQAESVHRLDM 65 L ILY D+ ++ V+KP G+ + P + V Y + V RLD+ Sbjct: 83 LEILYADEDLIAVDKPVGVAAHPTVGWDGPTVVGGLAAAGYRISTSGPPERNGIVQRLDV 142 Query: 66 ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125 TSGV+VVA ++ LKR F+ER K Y A V GH P G ++ + + K Sbjct: 143 GTSGVMVVAASERGYSVLKRAFKERTVSKTYHALVQGHMDPLAGTIEANIGRHPSSGWKF 202 Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185 V GK A T YE +E + + + TGR+HQ+RVHM AL HP GD Y + Sbjct: 203 AV-TSDGKHAVTHYETLEAFVA-ASLLEVHLETGRTHQIRVHMSALHHPCCGDPMYGADP 260 Query: 186 ---ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 AR R LHA L HPA G + ++P Sbjct: 261 QLSARLGLNRQWLHAVKLGFYHPADGRWLEIESPYP 296 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 267 bits (685), Expect = 1e-70, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 11/219 (5%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YPQAESVHRL 63 P+ ++ + +VV+KP+GL++ PG + + R +A VHRL Sbjct: 94 PEPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRL 153 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG++VVA + A+ L RQ + R ++Y+A G P G VD P+ D Sbjct: 154 DKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWL-PVAGKVDRPIGRDARVPV 212 Query: 124 KQKVCYETG-KPAQTEYEVVEYAA---DNTARVVLKPITGRSHQLRVHMLALGHPILGDR 179 + V KPA T Y + V + TGR+HQ+RVH+ +LGHP+L D Sbjct: 213 RMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLASLGHPLLADT 272 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y A A R +LHA L P G F+A Sbjct: 273 LYGGRLT-AGATRQMLHARALHFDDPGGGGPAAFRADPP 310 >UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aeruginosa RepID=B0JGC2_MICAN Length = 501 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73 L I+Y+D+ I+ +NKP+GLLSV GR ++ +D+V+ R +R VHRLD TSG++++ Sbjct: 300 LEIIYEDEGIIAINKPAGLLSVAGRYQDSQDAVVNRFRRQGKNLIPVHRLDRETSGILLL 359 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133 A + R L +QF+ RE +K Y A + G++DLPL + NRP Q V ++ GK Sbjct: 360 AKSLDIYRCLSQQFQRREVEKIYEAILSEIIERESGIIDLPLWGNPQNRPYQTVDWQRGK 419 Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA-LGHPILGDRFYASPEARAMAPR 192 +QT ++VV N +R+ P TGR+HQ+RVH LG ILGDR Y ++ R Sbjct: 420 ASQTYFKVVGKEG-NYSRLEFIPYTGRTHQIRVHSQQGLGIGILGDRLYNGKQS----DR 474 Query: 193 LLLHAEMLTITHPAYGNSMTFKAPADF 219 L LHA+ L+ HP N + P F Sbjct: 475 LHLHAKQLSFRHPQTENKLDLIIPTPF 501 >UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bifidobacteriaceae RepID=B7GQ28_BIFLI Length = 320 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 14/229 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------- 54 + P + ++Y+DD ++VV+KP G+ + +V+ ++ Sbjct: 65 EEQAGPEPIATDMAVVYEDDDVIVVDKPVGVAAHASVG-WTGPTVLGSLRDRGVHIASYG 123 Query: 55 --PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVD 112 + V RLD+ TSG+++V + A E++RQF E E KK Y A V G + ++ Sbjct: 124 AAGREGIVSRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKATIE 183 Query: 113 LPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALG 172 P+ + + V GKPA T ++V+E V + TGR+HQ+RVH ++G Sbjct: 184 APIGRAKVSDFRFCV-TPAGKPAVTHWDVLERFGHEATLVSVNLETGRTHQIRVHFSSIG 242 Query: 173 HPILGDRFYASPE---ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 HP+ GD Y + R LHA L HP T ++ Sbjct: 243 HPLCGDPMYGANPVLSEALGLDRQWLHAMKLEFRHPRTRVWTTVRSQYP 291 >UniRef50_B1XN95 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XN95_SYNP2 Length = 538 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 12/219 (5%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63 ++ E L I+Y+D ++ ++KP+GL S+PGR + DS +R++RDY VHRL Sbjct: 329 QDILTIPEIPLEIIYEDHSLIAIHKPAGLPSIPGRSSQTYDSAFSRLRRDYQDIFLVHRL 388 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 D TSG+++ A +++L+ QFR R+ K+Y A + EG++ LPL D +RP Sbjct: 389 DQDTSGILLFAKNAETQQDLQTQFRRRKIHKEYEALLEEKIQRPEGMITLPLWADPGDRP 448 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRF 180 +QKV + GKP++T + ++ R+ LKPITGR+HQLRVH L +PILGDR Sbjct: 449 RQKVDAQRGKPSETYFVKLDSH-----RLKLKPITGRTHQLRVHCAHPNGLNNPILGDRL 503 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y + APRL L A LT HP N T ++ +F Sbjct: 504 YGNRA----APRLHLQATALTFMHPETKNPHTIQSAPEF 538 >UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT91_9SPIO Length = 326 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 28/242 (11%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------- 52 ++ P+ L ILY+D+ ++ VNK G+++ P V Sbjct: 69 PDFLIPEHIPLQILYEDNDVIAVNKRVGMVTHPAAGNWTGTLVQALAYYRLHTSPIHDKF 128 Query: 53 --------------DYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA 98 D +A VHRLD TSGV++ A + AAE LK +F+ R +K Y A Sbjct: 129 AGLLEAEQGRGNFEDLLRAGIVHRLDKDTSGVLITARSAAAEAFLKDEFKMRRTEKYYAA 188 Query: 99 RVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE--TGKPAQTEYEVVEYAADNTARVVLKP 156 + G P G+++ + D +R + + GK A++ Y+V+ A V+ K Sbjct: 189 ILNGVPEKRTGVIETSVFRDEHSRIRFTASADLAKGKYARSRYKVLRVYG-RYALVLFKI 247 Query: 157 ITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAP 216 TGR+HQ+R+H +G PI+GD Y EA ++LHA L + P+ F AP Sbjct: 248 DTGRTHQIRLHARFIGCPIVGDPLYGKKEAEWKPYGMMLHAYRLCVALPSTREKTVFTAP 307 Query: 217 AD 218 Sbjct: 308 LP 309 >UniRef50_D1PDP7 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDP7_9BACT Length = 556 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 120/220 (54%), Gaps = 22/220 (10%) Query: 17 LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMATSGVIVV 73 LY+D + V+ KP GLLSVPG+ SV ++R Y + VHRLDMATSG++++ Sbjct: 342 LYEDRELAVIYKPEGLLSVPGKDAAQP-SVYALMRRKYQEATGPLIVHRLDMATSGLMII 400 Query: 74 ALTKAAERELKRQFREREPKKQYVARVWGHPSPA-----------EGLVDLPLICDWPNR 122 A T+ A L+++F +K+YVA V G + G + LPLI D+ +R Sbjct: 401 AKTEFAYHRLQKEFLNHRVQKKYVAIVCGKDKESCNRILKEAEGGRGYISLPLIADFLDR 460 Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDR 179 P+Q V E GK A TEYEV+E D R+ L P TGR+HQLRVH L PI+GD Sbjct: 461 PRQMVNREQGKEAITEYEVLERIDDTHLRLALYPKTGRTHQLRVHCAHQEGLNAPIIGDP 520 Query: 180 FYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 Y A RL LHAE +T HP G MT ADF Sbjct: 521 LYG----NEPATRLHLHAEEITFEHPMTGKKMTVTRKADF 556 >UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D n=23 Tax=Borrelia RepID=RLUD_BORBU Length = 326 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 11/208 (5%) Query: 5 NYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR----------DY 54 + P + I+Y+D +++V+NKP G+LS PG V + + Sbjct: 75 DCLRPSNIPIAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEK 134 Query: 55 PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLP 114 + VHRLD TSGV++ A + R L +QF+++ K Y+A V G+ + G ++ Sbjct: 135 IRPGIVHRLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIVKGNFNSFFGSIESF 194 Query: 115 LICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHP 174 + D NR K V + GK A TEY ++ + + + LKP TGR+HQLRVHM L P Sbjct: 195 IDRDKHNRKKFSVSKDRGKKALTEYRLLLNFGE-YSLLALKPKTGRTHQLRVHMKYLNFP 253 Query: 175 ILGDRFYASPEARAMAPRLLLHAEMLTI 202 ILGD Y + L+LH+ L I Sbjct: 254 ILGDEVYGRVDGSLKKITLMLHSYKLEI 281 >UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8D7_COPPD Length = 315 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 13/221 (5%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QA 57 P + ++Y D+H+ V++KP L+ P + ++ + +D+P + Sbjct: 77 LQPADVEYSVVYYDEHLAVIDKPPNLVVHPAPSVK-GLTLCHGLLKDFPQVKNVGSAERP 135 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG+++VAL++ L + E+ ++Y+ V+G + VD P+ Sbjct: 136 GIVHRLDKDTSGLMLVALSEKGYAGLTKMISEKSVSRKYLVAVYG-VANRPFEVDAPIGR 194 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 D N + V GK A T + V+ + + + + TGR+HQ+RVH+ G +LG Sbjct: 195 DPRNPTRMAVV-PHGKNAYTRFRPVQCL-EKVSLLEAELFTGRTHQIRVHLSHAGFYVLG 252 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y + E+R +APR+ LH+ L + HP G + F +P Sbjct: 253 DPVYGNVESRLLAPRVFLHSYYLELEHPITGERLFFVSPLP 293 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 19/233 (8%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 + P+ L +Y+D+ I+V+NKP ++ P V + + Sbjct: 80 ETPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGERLKQEF 139 Query: 57 ------AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL 110 VHRLD TSG+++ T+ A+ F ++ KK Y+A P+ Sbjct: 140 PEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMKKMYIAICINSPAQKH-- 197 Query: 111 VDLPLICDWPNRPKQKV---CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167 + + R + V E GK A T V+ + V L P TGR+HQLRVH Sbjct: 198 IHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNG-RLSVVALYPETGRTHQLRVH 256 Query: 168 MLALGHPILGDRFYASPEA--RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 M LG PILGD Y P R + LHA L THP + Sbjct: 257 MKHLGTPILGDPVYGVPSINFRYGLDKQQLHAYSLVFTHPESAERVELVTKLP 309 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 27/223 (12%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKD---------SVMTRIQRDYP--------QAE 58 I+++D ++ V+NKPSG+L P ++ ++++ I + P +A Sbjct: 77 IIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILANPPKNFEKGITRAG 136 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLD TSGV+++A + + F RE K Y A V G +G++++P+ Sbjct: 137 LVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVVPDDKGIINVPIGRV 196 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + K E G+ A TEY V++ + + + L P+TGR++QLRVHM LG+P+LGD Sbjct: 197 TGGKIK---ASELGREAVTEYSVLQR-KETVSLMKLHPVTGRTNQLRVHMSWLGYPVLGD 252 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 Y APRL+LH++ HP + F P DF Sbjct: 253 WLYKGAT----APRLMLHSKSAEFEHPFTSKPVKFTVAPPKDF 291 >UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria RepID=Q26D11_9BACT Length = 561 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 129/229 (56%), Gaps = 18/229 (7%) Query: 1 MGMENY----NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ 56 + +E+ NP + + ++Y+DD I++VNKP LSVPG+ + DSV +R++ YP Sbjct: 341 IEVEDNPLLINPGIDKTMEVIYEDDAIIIVNKPEEFLSVPGKTIK--DSVYSRLKELYPD 398 Query: 57 ---AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDL 113 VHRLDM+TSG++V ++ QF R K+YVA + G EG+++L Sbjct: 399 ATGPILVHRLDMSTSGILVATKNLEYYHFIQEQFINRTISKRYVALLNGVLENNEGMIEL 458 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA--- 170 PL D NRP Q VCYE GK A+T+Y+V+E + V PITGR+HQLRVH Sbjct: 459 PLRVDLDNRPTQLVCYEYGKSARTKYQVLER-REKETLVHFYPITGRTHQLRVHAAHASG 517 Query: 171 LGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 L PI+GD Y + RL LHAE + HP +++FKAP F Sbjct: 518 LNAPIVGDDLYGTAT-----NRLHLHAEFIKFIHPITHKTVSFKAPVPF 561 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 10/221 (4%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-----AE 58 + P++ L I Y+DD++++VNKP+G L P E H + Sbjct: 68 PSDIEPEDLPLDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYKAHGEHHAYH 127 Query: 59 SVHRLDMATSGVIVVALTKAAERELK-RQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD TSG++++A + +L R + ++Y+A + G +P EGL+D P+ Sbjct: 128 PVHRLDRNTSGLVLIAKVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPEGLIDAPIAR 187 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177 P+ +KV G+ A+T Y+ V+ + + L TGR+HQ+RVH+ LGHP+LG Sbjct: 188 ALPSIILRKV-SPDGQTARTHYDTVQTDG-KLSLIHLVLDTGRTHQIRVHLAHLGHPLLG 245 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 D Y AR R LHA L HP G + + P Sbjct: 246 DDLYGGNLAR--IKRQALHAARLHFRHPMTGAEIDVQVPLP 284 >UniRef50_A0YGE0 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YGE0_9GAMM Length = 221 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 107/216 (49%), Positives = 138/216 (63%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63 P + IL+ DD +++VNKP+GLLSVPGR +KD ++TR+QR Y A VHRL Sbjct: 5 PYIVKPCTEDVEILFTDDDLLLVNKPAGLLSVPGRHPANKDCLITRVQRQYADARIVHRL 64 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123 DM TSG++V+AL+ + R L + F ER+ K+Y A V+G L+DLPL+CDWPNRP Sbjct: 65 DMDTSGIMVLALSADSHRALSQLFAERKIIKEYEANVYGTIIDDHRLIDLPLLCDWPNRP 124 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 +QKV + GK AQT E V D RV+LKP+TGRSHQLRVH+ +GHPILG FYA Sbjct: 125 RQKVDFHHGKNAQTWVERVSQHPDGWTRVLLKPVTGRSHQLRVHLAEIGHPILGCEFYAH 184 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A +MA RL LHA L HP G ++ + F Sbjct: 185 QRAVSMADRLQLHATKLEFCHPNSGETILGISNCPF 220 >UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX2_THICR Length = 241 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 97/201 (48%), Positives = 137/201 (68%), Gaps = 1/201 (0%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75 +LY+DD I+VVNKP+GLLSVPG+ + + +++ ++Q+ P A VHRLDM TSG++++A Sbjct: 29 VLYEDDDIIVVNKPAGLLSVPGKDLDPEMNLLAQVQKHVPTALIVHRLDMDTSGIMILAK 88 Query: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPA 135 KA+ R L QF++R +K Y A +G PS ++G ++LP+ CDW NRP Q + + GK A Sbjct: 89 HKASHRHLSIQFQDRLTEKTYQAICFGKPSTSQGHLNLPMRCDWENRPLQIIDLKQGKAA 148 Query: 136 QTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLL 195 T +++ DN V L P+TGRSHQLR+HM LGHPILGD YA P++ A + RLLL Sbjct: 149 STHWKLTAQY-DNAFEVNLTPVTGRSHQLRLHMKMLGHPILGDNLYADPQSFAASKRLLL 207 Query: 196 HAEMLTITHPAYGNSMTFKAP 216 HA L +THP +M F+ P Sbjct: 208 HAASLKVTHPVTKKTMLFEHP 228 >UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 Tax=Leptospira RepID=Q04XF3_LEPBL Length = 312 Score = 265 bits (680), Expect = 6e-70, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 13/221 (5%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--------DYPQA 57 P L ++ + + ++++KP G+ S G + V + + Sbjct: 76 SLEPIPMTLPVVLEREDYLIIHKPPGIASHSGPGDRSPSLVNGLLHHFKELSKVGGEARP 135 Query: 58 ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLIC 117 VHRLD T G++++A A +L FR+RE +K+Y A + GH G +DLP+ Sbjct: 136 GIVHRLDKPTEGLMLIAKNDRAHGKLSELFRKREIEKKYYAWIQGHLPAETGTIDLPIAR 195 Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVE----YAADNTARVVLKPITGRSHQLRVHMLALGH 173 R K V G+ + T Y+V++ + + V + TGR+HQ+R+H + Sbjct: 196 HPIERLKMTV-SPKGRKSVTHYKVLKYVNSRSGRKFSFVEVGLETGRTHQIRIHFQSQRC 254 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFK 214 P++GD Y+ ++ + L L + L P G + Sbjct: 255 PVVGDLLYSRTGSQFESYGLQLLSYYLKFKDPFTGEMIEAT 295 >UniRef50_Q0F1Z5 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1Z5_9PROT Length = 579 Score = 265 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ---AESVHRLDMATSGV 70 + I+Y+DD ++VVNKP+GL+S E ++S+ +R+ + YPQ VHRLDM TSG+ Sbjct: 374 IEIVYEDDQLLVVNKPAGLMS--TPGREIEESLFSRLAQRYPQIPELTLVHRLDMDTSGL 431 Query: 71 IVVALTKAAERELKRQFREREPKKQYVARVWGHPS--PAEGLVDLPLICDWPNRPKQKVC 128 ++VA + L++QF ER +K Y A + P +G ++LPL D +RP+Q VC Sbjct: 432 LLVAKDLRTHKRLQKQFIERSVEKCYEAVLVKRLPAQPDQGRIELPLRVDLDDRPRQMVC 491 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPE 185 Y+ GKPA T ++++ + R+ P TGR+HQLRVH L I+GD Y Sbjct: 492 YQHGKPATTRWQIIARENNR-TRIWFYPETGRTHQLRVHASHRDGLNAAIVGDGLYG--- 547 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL+LHA L THP M F+ PA F Sbjct: 548 --LPAERLMLHARRLCFTHPVSREPMVFELPAPF 579 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRD-----YP 55 + E Q+ L I+Y+DD I+V+NKP L+ PG + + P Sbjct: 71 IDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 Query: 56 QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 +A VHRLD T+G++VVA T A+ L + RE ++Y A GH + G V+ P+ Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAG-GTVNEPI 189 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 R V + GKPA T Y ++E+ + R+ L+ TGR+HQ+RVHM + HP+ Sbjct: 190 SRHPTKRTHMSV-HPMGKPAVTHYRIMEHFRVH-TRLRLRLETGRTHQIRVHMAHITHPL 247 Query: 176 LGDRFYASPEARAMAPR 192 +GD+ Y A R Sbjct: 248 VGDQVYGGRPRPPKAHR 264 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 28/239 (11%) Query: 6 YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------PQ 56 + PP+ L IL++DD ++V+NKP+GL++ P ++ +Q + Sbjct: 74 FVPPEPTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGT-LINAVQHYLDKQSTHPGLER 132 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 VHRLD TSG + + + R L QF+ K Y+A V G + + ++DLP+ Sbjct: 133 PGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQLVIDLPIG 192 Query: 117 CDWPNRPKQKVCYETGKPAQ---TEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 C AQ T VVE + V KP TGR HQ+R+H+ +G Sbjct: 193 RAPGCSSALMSCRADALEAQASKTSLRVVERFPQH-TLVEAKPRTGRMHQIRIHLATIGF 251 Query: 174 PILGDRFY--ASP------------EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 PI+GD FY + + R LHA L+ HP F+AP Sbjct: 252 PIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDFQAPLP 310 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 111/232 (47%), Gaps = 25/232 (10%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP---------QAESV 60 L I+YQDD I V+NKP+G+++ P + + ++ +P + V Sbjct: 35 VNVHLDIIYQDDRIAVINKPAGMITHPAKGHWKGT-LTEGLKGQFPQLSTIGGPTRPGIV 93 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD TSGVIV+A AA LK QF++R +K+Y A V G P L++ P+ Sbjct: 94 HRLDRDTSGVIVIAKDDAAHEFLKTQFQDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPK 153 Query: 121 NRPKQKVC--YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 R + + + GK AQT YEV+E A + P TGR+HQ+RVH++ GHP+L D Sbjct: 154 IRERMAIRRGDDEGKDAQTFYEVLERY-QGFAAIKALPKTGRTHQIRVHLMHAGHPVLCD 212 Query: 179 RFYA------------SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y + + R LHA + I HP G F AP Sbjct: 213 PLYGSRRFLSLGELQHDDDRTVLLNRTALHAHRIAIAHPDDGEIREFIAPLP 264 >UniRef50_C7PHX6 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PHX6_CHIPD Length = 570 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 14/224 (6%) Query: 2 GMENYNPPQEP-WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR--DYPQAE 58 P+ L I+YQD+ ++VVNKPSGL SVPG +DSV TR++ + Sbjct: 355 EDPLLRTPETVGELDIIYQDESVVVVNKPSGLRSVPG--VTIQDSVYTRLKHALGDIEPL 412 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 VHRLDM TSG++VVA T+AA + ++RQF +R K+Y A + +EG +DLPL D Sbjct: 413 IVHRLDMDTSGLLVVAKTQAAHKHIQRQFLQRTVSKRYTALLSKVIDTSEGEIDLPLTAD 472 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPI 175 NRP+Q VC+ TGK + T ++VV ++ P+TGR+HQLR+H L PI Sbjct: 473 LFNRPRQIVCFTTGKKSVTRWKVVTRY-QAMTKIDFWPLTGRTHQLRMHSAHPLGLNAPI 531 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 +GD Y A R+ LHA + THP ++F AP F Sbjct: 532 VGDDLYG-----TAAERMYLHAAHIEFTHPLSRQRISFDAPVTF 570 >UniRef50_D2EJM0 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EJM0_PEDAC Length = 304 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 13/220 (5%) Query: 7 NPPQEPWL----VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----AE 58 PP +P +L+++D ++VVNKP+G+ + + E S++ +Q + + A Sbjct: 74 LPPFDPDSSQSPDVLFENDDLLVVNKPAGIKTHANQPHELG-SMINFLQAYFAKKDSNAY 132 Query: 59 SVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118 +VHRLD TSG ++VA L RQ ++ ++ Y+ V GH G + LP+ D Sbjct: 133 NVHRLDQWTSGALLVAKNPVVVPILSRQISQKLIQRTYLCVVEGHLKSRSGTITLPIGLD 192 Query: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 ++ K+++ +PA T Y+VV + + + ++ TGR+HQ+RVH+ ALGHPI+GD Sbjct: 193 PHDQRKRQINGPGAQPATTHYQVVREFVER-SLLRVQLATGRTHQIRVHLAALGHPIVGD 251 Query: 179 RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 Y S A + LH+ + P + T AP Sbjct: 252 PLYNSLADGAP---MRLHSWQVKFPLPFSQSWQTVTAPVP 288 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 14/228 (6%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---- 57 G P L IL++DD++++VNKP G S+P +L + S+ R++ Sbjct: 65 GEHETVVPSHIPLDILFEDDYLLIVNKPQGTASIPSQLHPDQ-SMANRVKGYLQTTRTQD 123 Query: 58 ---ESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGH-PSPAEGLVDL 113 V RLD T+GV++ A + + + R + +K Y A V L+D Sbjct: 124 CVTHVVTRLDRDTTGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLKEHDLIDA 183 Query: 114 PLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGH 173 P+ + + V GKP+ TEY +E ++ V ++ TGR+HQ+RVH LG Sbjct: 184 PIGRTDDSIINRCV-RPDGKPSLTEYW-LEETYQHSQLVKIRLHTGRTHQIRVHFSWLGC 241 Query: 174 PILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKA--PADF 219 P+LGD Y + + R LH L HP G M KA P D Sbjct: 242 PLLGDDLYGGEKIEPLM-RQALHCSQLDFVHPMTGEKMCVKALLPKDM 288 >UniRef50_A5VLP2 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VLP2_LACRD Length = 290 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 13/222 (5%) Query: 4 ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-------PQ 56 ++ L ++Y+DD+ +VV+KP+G+ S+PG ++ D+V+ R++ + Sbjct: 68 DDTVESSNEPLNVVYEDDNWLVVDKPAGVTSIPGPTVQN-DTVLNRVKGYLIANNSADLR 126 Query: 57 AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI 116 + RLD T G++++A A + +Q ++ + K+Y A V G G ++ P+ Sbjct: 127 PHLITRLDRFTGGLLLIAKHHIASSMISQQVQQHQMLKEYTALVEGQVMDEHGEINKPIG 186 Query: 117 CDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 + +V E G+ A TEY V E RV ++ TGR+HQ+RVH A+GH ++ Sbjct: 187 R--KDGQAARVIDENGQRALTEYWVEER-GAKWTRVRVRLHTGRTHQIRVHFAAIGHSLI 243 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y ++ LLHA ++ P MTF + Sbjct: 244 GDHLYGGDTSKY--DHQLLHASKISFNDPFTLKQMTFTSELP 283 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 13/223 (5%) Query: 2 GMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ----- 56 + P L +LY+D+ ++VV+KP+G+L P D+++ + + + Sbjct: 65 EEKAAVIPVHLPLSLLYEDEDLLVVDKPAGMLIHPTWSGAR-DTLVQAVGGYFRRTGQHC 123 Query: 57 -AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL 115 ++RLD T+GV++VA + A+ L R + ++Y+A G +G ++ P+ Sbjct: 124 GIHPLYRLDRDTTGVLMVAKSAFAKHALTRD--HSQIYREYLAVCEGRWGIPQGRIEHPI 181 Query: 116 ICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPI 175 + V G+PA TEY ++E + + + +TGR+HQ+RVH GHP+ Sbjct: 182 GRVAEGVDRWTV-RPDGRPAVTEYRILEENQE-WTVLKIHLLTGRTHQIRVHFAHEGHPL 239 Query: 176 LGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 +GD Y + + R R LHA + HP G + AP Sbjct: 240 VGDPLYGTKDGR--IARQALHAWTVRFRHPRTGEEILLTAPMP 280 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 20/229 (8%) Query: 7 NPPQEP---------WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ- 56 PP+ + ++Y+D +VVNKP L +V + D+++ R++ Y + Sbjct: 62 LPPEPGNPHVVRSRQPIDVIYEDQDYLVVNKPPFLPTVQSARNQT-DTLVNRVKNYYAER 120 Query: 57 ------AESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL 110 V RLD TSG+++ A + A + + R+ +K Y+A G + + GL Sbjct: 121 DYESQVVHVVTRLDQDTSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSHGL 180 Query: 111 VDLPLICDWPNRPKQKVCYE-TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML 169 +D P+ D + K++V GKP++TEY V+E D + + ++ TGR+HQ+RVH Sbjct: 181 IDAPIERDPASFIKRRVASAGNGKPSKTEYWVLEQ-TDTDSLLKVQLHTGRTHQIRVHFS 239 Query: 170 ALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 L HP++GD Y + + R LH L + G + +AP Sbjct: 240 ELHHPLIGDPLY-NETSFRSLQRQALHCFSLKFENVFRGKKIDVQAPIP 287 >UniRef50_C0X7U3 Pseudouridine synthase n=21 Tax=Enterococcus faecalis RepID=C0X7U3_ENTFA Length = 297 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 13/216 (6%) Query: 11 EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-------AESVHRL 63 + + I+++DDH +VVNKP+G+ S+P + + R++ Y + V RL Sbjct: 75 DEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGT-MANRVKGYYKRQNYVNQVIHVVTRL 133 Query: 64 DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP--AEGLVDLPLICDWPN 121 D TSG+++ A A + ++ RE++ K Y A V G L++ P+ D + Sbjct: 134 DRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLNEHQLIEKPIGRDLSS 193 Query: 122 RPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY 181 K++V ETG+ A TEY + + A A V ++ TGR+HQ+RVH A+G +LGD Y Sbjct: 194 LLKRQVI-ETGQFASTEYWLAKRGAQAAA-VRIQLHTGRTHQIRVHFEAIGCSLLGDEMY 251 Query: 182 ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPA 217 + R LH L THP ++ +P Sbjct: 252 HGKMDQ-GIERQALHCMELIFTHPFTKETVHLISPL 286 >UniRef50_C1AE05 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE05_GEMAT Length = 476 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 91/210 (43%), Positives = 118/210 (56%), Gaps = 8/210 (3%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGVIV 72 ++Y+DDH++VVNKPSG+L+VPGR +D VMTR++ YP A VHRLD+ TSG+++ Sbjct: 269 VVYEDDHLLVVNKPSGMLTVPGRGPTMQDCVMTRLRARYPDATGQMVVHRLDLDTSGLLL 328 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG 132 A L+R F RE K YVA + G + G + LPL D +RP+ G Sbjct: 329 AAKDPITASALQRLFSLREIDKHYVAWLDGVVTDDHGHIHLPLRMDVDDRPRNIHDPVFG 388 Query: 133 KPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYASPEARAM 189 KPA TE++V+ D RV P TGR+HQLRVH L PI+GDR Y A Sbjct: 389 KPAHTEWQVMAR-TDGRTRVRFTPHTGRTHQLRVHAAHPDGLDAPIVGDRLYG-RTAPDE 446 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPADF 219 RL LHAE L HP G + + PA F Sbjct: 447 DERLQLHAERLAFVHPVSGAKVVVEQPAPF 476 >UniRef50_C7QW59 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=C7QW59_CYAP0 Length = 551 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 122/213 (57%), Gaps = 10/213 (4%) Query: 13 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSG 69 + ++Y+D I+ ++KPSGLLSVPGR E DSV+TR+Q P A +VHRLD TSG Sbjct: 343 EIKVIYEDQWIIAIDKPSGLLSVPGRYFETFDSVLTRLQNSLPDAQELRTVHRLDQDTSG 402 Query: 70 VIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 ++++A + R L +QF +R+ +K Y A + G EG++ LPL D NRP QKV + Sbjct: 403 ILLLARDRYTHRHLSQQFAQRKVEKIYEAILAGSVMMNEGVIQLPLWGDPNNRPYQKVDW 462 Query: 130 ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM---LALGHPILGDRFYASPEA 186 E GKP+ T+++V+ +N R+ P+TGR+HQ+RVH LG ILGD Y Sbjct: 463 ELGKPSITQFKVI-TTQENLTRIQFIPLTGRTHQIRVHAVDTQGLGSVILGDYLYGC--- 518 Query: 187 RAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHA L HP ++ F Sbjct: 519 NAGVSRLHLHARELKFEHPQQQKTVHLYLETPF 551 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 10/210 (4%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKD---SVMTRIQRDYP--QAESVHRLDMATS 68 L ++Y DD + V++KP+G+ + + + P + VHRLD TS Sbjct: 76 LRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANTS 135 Query: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128 G++V+A + A LK FR+R K+Y A V G+P P+ G+++ P+ D +R + + Sbjct: 136 GLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDLKHRDRFCID 195 Query: 129 YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE--- 185 Y G+ A T+Y E + + P TGR+HQ+RVH AL HP++GD Y + Sbjct: 196 YS-GRDAVTQYSTEEVYP-GFTLLSVAPKTGRTHQIRVHFSALRHPLVGDVKYGADPVFS 253 Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKA 215 + R LHA L+ THP G + F++ Sbjct: 254 QKVNLKRQWLHAYHLSFTHPVSGVFVEFES 283 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 107/208 (51%), Gaps = 9/208 (4%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQ-AESVHRLDMATSGVIVVA 74 I+Y+DDH++++NKPSG G R R + E VHR+D TSG+++VA Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLELVHRIDRDTSGILLVA 156 Query: 75 LTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134 ++A R L+ QFRE+ +K Y A V GH +V+ PL+ + N + GKP Sbjct: 157 KKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVR--VNPNGKP 214 Query: 135 AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE-----ARAM 189 ++T + ++E A+ V P+TGR+HQ+RVH +GHPI D Y A+ Sbjct: 215 SETRFRILEKFAE-ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFG 273 Query: 190 APRLLLHAEMLTITHPAYGNSMTFKAPA 217 RL LHA + HPA + AP Sbjct: 274 IERLFLHAANIQFVHPASEKKLEIHAPL 301 >UniRef50_Q31NG5 Pseudouridine synthase n=2 Tax=Synechococcus elongatus RepID=Q31NG5_SYNE7 Length = 543 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 15/222 (6%) Query: 7 NPP---QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SV 60 PP + L ILY+D ++ + KP+GLLSVPG + S + +++ +P V Sbjct: 328 LPPSSDEPLELPILYEDADLLAIIKPAGLLSVPGTRGLQQASAIQLLRQQFPDLPTYCVV 387 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 HRLD ATSG+++VA + + L QFR R+ K Y A + G P G +DLPL DW Sbjct: 388 HRLDQATSGILLVARNRPTQVALFEQFRRRQVHKVYEALLEGQPDCTAGTIDLPLRPDWT 447 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILG 177 RP Q V + G+PA T Y ++ D R+ L+PITGR+HQLRVHM LG PILG Sbjct: 448 RRPYQLVDRDRGRPALTYYRCIDQTGDR-CRMELEPITGRTHQLRVHMAHPEGLGQPILG 506 Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 D Y + RL LHA + HP+ + + F Sbjct: 507 DDLYG-----QSSDRLYLHARSIRFRHPSQLDWIQLTTDTPF 543 >UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7R4_MYCH7 Length = 304 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 14/222 (6%) Query: 7 NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQR-------DYPQAES 59 P E I++QD +++++NKP L+ PG V I D+ + Sbjct: 75 LEPAEIDFEIIFQDQNMILINKPKNLVVHPGVGNWKNTLVNGLISHFDSLEQLDHIRPGI 134 Query: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119 VHRLD T+G+++VA A + R+ K+ Y A V G ++LP+ D Sbjct: 135 VHRLDKDTTGLLLVAKNAKAHSFFVNELANRQIKRFYKAIVIGKVLHKFMKINLPIGRDL 194 Query: 120 PNRPKQKVCYETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPIL 176 N K+ + + KPA T E++++ + + V + TGR+HQ+R+H+ +G+PI Sbjct: 195 KNPLKKTISFFNSKPAITNVELIKHFNYQNQDFSLVKCQLETGRTHQIRLHLAHIGYPIY 254 Query: 177 GDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 GD Y LHA L G S F+A Sbjct: 255 GDPIYGKKIDELG---QRLHAYKLVFKD-LNGLSREFQADLP 292 >UniRef50_D1PU24 Pseudouridine synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PU24_9BACT Length = 421 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 97/216 (44%), Positives = 124/216 (57%), Gaps = 18/216 (8%) Query: 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMA 66 + L I+Y+DD + VV+KP+G+LSVPG+ SV+ ++R P A VHRLDMA Sbjct: 218 ETHELKIVYEDDTLCVVDKPAGMLSVPGKGCRE--SVLDVMRRRCPDATGALVVHRLDMA 275 Query: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 126 TSG++VVA T A REL+RQF R +K+YVA + P +G + LPL D +RP+Q Sbjct: 276 TSGLMVVAKTAEAYRELQRQFATRSVRKRYVAILSRQPREPKGEIALPLRPDLDDRPRQV 335 Query: 127 VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLA---LGHPILGDRFYAS 183 V GKPA T YE+++ RV L P TGR+HQLRVH L PI GD Y Sbjct: 336 VDSVYGKPALTHYEIID-----GCRVALYPRTGRTHQLRVHCAHRDGLDSPIKGDELYGR 390 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 A RL LHAE L HPA G + F + A F Sbjct: 391 R-----AERLYLHAEWLAFRHPATGEEVEFTSVAPF 421 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 109/214 (50%), Gaps = 14/214 (6%) Query: 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAE---SVHRLDMATSGVIV 72 ILY+DDHI+V+NKPSG G V+ ++ P+A VHRLD TSGV++ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFG--VIEGLRALRPEARFLELVHRLDRDTSGVLL 152 Query: 73 VALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYET 131 VA ++A R L Q RE+ +K Y+A V G V PL+ + ++ V + Sbjct: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQE 212 Query: 132 GKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP------- 184 GKP++T ++V E A V P+TGR+HQ+RVH GHPI D Y Sbjct: 213 GKPSETRFKVEERYAF-ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLT 271 Query: 185 EARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 EA RL LHA L THP G M +AP D Sbjct: 272 EAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMD 305 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.216 0.872 Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,112,231,205 Number of Sequences: 3077464 Number of extensions: 134677480 Number of successful extensions: 256688 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3149 Number of HSP's successfully gapped in prelim test: 840 Number of HSP's that attempted gapping in prelim test: 242511 Number of HSP's gapped (non-prelim): 4629 length of query: 219 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 95 effective length of database: 658,790,820 effective search space: 62585127900 effective search space used: 62585127900 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.4 bits)