Phyre 2 alignment of P0AA37 with c2apoA_

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Job Description | P0AA37
Confidence | 97.32% | Date | Thu Jan 5 11:11:49 GMT 2012
Rank | 20 | Aligned Residues | 69
% Identity | 30% | Template | c2apoA_
PDB info | PDB header:isomerase/rna binding protein | Chain: A: PDB Molecule:probable trna pseudouridine synthase b; | PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
Resolution | 1.95 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . |  |  | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | D | H | I | M | V | V | N | K | P | S | G | L | L | S | V | P | G | R | L | E | E | H | K | D | S | V | M | T | R | I | Q | R | D | Y | P | . | . | Q | A | E | S | V | H | R | L | D | M | A | T | S | G | V | I | V | V | A | L | T | K | A | A | E | R | E | L | K | R | Q | F | R | E | R | E | P | K | K | Q | Y | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |
Template Sequence |  | K | Y | G | V | V | V | V | D | K | P | R | G | P | T | S | H | . | . | . | . | . | . | . | . | . | E | V | S | T | W | V | K | K | I | L | N | L | D | K | A | G | H | G | G | T | L | D | P | K | V | T | G | V | L | P | V | A | L | E | R | . | . | A | T | K | T | I | P | M | W | H | I | P | P | . | . | K | E | Y | V
Template Known Secondary structure |  |  | T |  |  |  |  |  |  |  |  | S | S | S |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  | S | S |  |  |  | T | T |  |  |  |  |  |  |  |  |  | G | G | . | . | G | G | G | G | G | G | G | T | T | S | S |  | . | . |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 44 | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |  |  | . | . | . | . | . | 100 | . | . | . | . | . | . |  |  | . | . | . | 110
|  | 98 | . | 100 | .
Predicted Secondary structure |  |  |  |  |
Query SS confidence |  |  |  |  |
Query Sequence |  | A | R | V | W
Query Conservation |  |  |  |  |
Alig confidence |  |  |  |  |
Template Conservation |  |  |  |  |
Template Sequence |  | C | L | M | H
Template Known Secondary structure |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |
Template SS confidence |  |  |  |  |
|  | 111 | . | . | .

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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