Phyre 2 Results for P0AA37

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Email | l.a.kelley@imperial.ac.uk
Description | P0AA37
Date | Thu Jan 5 11:11:49 GMT 2012
Unique Job ID | 8589e1fb10d2983a

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2i82D_
Top template information
PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
216 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | G | M | E | N | Y | N | P | P | Q | E | P | W | L | V | I | L | Y | Q | D | D | H | I | M | V | V | N | K | P | S | G | L | L | S | V | P | G | R | L | E | E | H | K | D | S | V | M | T | R | I | Q | R | D | Y | P | Q | A | E | S | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | H | R | L | D | M | A | T | S | G | V | I | V | V | A | L | T | K | A | A | E | R | E | L | K | R | Q | F | R | E | R | E | P | K | K | Q | Y | V | A | R | V | W | G | H | P | S | P | A | E | G | L | V | D | L | P | L | I | C | D | W | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | N | R | P | K | Q | K | V | C | Y | E | T | G | K | P | A | Q | T | E | Y | E | V | V | E | Y | A | A | D | N | T | A | R | V | V | L | K | P | I | T | G | R | S | H | Q | L | R | V | H | M | L | A | L | G | H | P | I | L | G | D | R | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | .
Sequence |  | Y | A | S | P | E | A | R | A | M | A | P | R | L | L | L | H | A | E | M | L | T | I | T | H | P | A | Y | G | N | S | M | T | F | K | A | P | A | D | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2i82D_ |

### PDB 2i82 chain D

Region: 4 - 219
Aligned: 216
Modelled: 216
Confidence: 100.0%
Identity: 97%
PDB header:lyase/rna
Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure

Phyre2
2 |
| d1v9fa_ |

### PDB 1v9f chain A

Region: 8 - 218
Aligned: 208
Modelled: 211
Confidence: 100.0%
Identity: 38%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2
3 |
| c1v9fA_ |

### PDB 1v9f chain A

Region: 8 - 218
Aligned: 208
Modelled: 211
Confidence: 100.0%
Identity: 38%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli

Phyre2
4 |
| c1qyuA_ |

### PDB 1qyu chain A

Region: 8 - 218
Aligned: 208
Modelled: 206
Confidence: 100.0%
Identity: 36%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud

Phyre2
5 |
| d1v9ka_ |

### PDB 1v9k chain A

Region: 16 - 218
Aligned: 202
Modelled: 199
Confidence: 100.0%
Identity: 39%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2
6 |
| c1vioA_ |

### PDB 1vio chain A

Region: 11 - 192
Aligned: 163
Modelled: 170
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridylate synthase

Phyre2
7 |
| c1kskA_ |

### PDB 1ksk chain A

Region: 16 - 183
Aligned: 151
Modelled: 156
Confidence: 100.0%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: structure of rsua

Phyre2
8 |
| c2omlA_ |

### PDB 2oml chain A

Region: 19 - 183
Aligned: 159
Modelled: 163
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue

Phyre2
9 |
| c2olwB_ |

### PDB 2olw chain B

Region: 21 - 183
Aligned: 157
Modelled: 163
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue

Phyre2
10 |
| c3dh3C_ |

### PDB 3dh3 chain C

Region: 15 - 183
Aligned: 148
Modelled: 153
Confidence: 100.0%
Identity: 14%
PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate

Phyre2
11 |
| d1vioa1 |

### PDB 1vio chain A domain 1

Region: 19 - 183
Aligned: 146
Modelled: 153
Confidence: 100.0%
Identity: 19%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2
12 |
| d1kska4 |

### PDB 1ksk chain A domain 4

Region: 21 - 182
Aligned: 145
Modelled: 150
Confidence: 100.0%
Identity: 17%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase RsuA/RluD

Phyre2
13 |
| c2gmlA_ |

### PDB 2gml chain A

Region: 20 - 181
Aligned: 141
Modelled: 146
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of catalytic domain of e.coli rluf

Phyre2
14 |
| d1k8wa5 |

### PDB 1k8w chain A domain 5

Region: 21 - 101
Aligned: 70
Modelled: 81
Confidence: 97.6%
Identity: 17%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
15 |
| d2ey4a2 |

### PDB 2ey4 chain A domain 2

Region: 20 - 101
Aligned: 69
Modelled: 80
Confidence: 97.6%
Identity: 30%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
16 |
| d2apoa2 |

### PDB 2apo chain A domain 2

Region: 21 - 101
Aligned: 68
Modelled: 81
Confidence: 97.5%
Identity: 32%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
17 |
| d1sgva2 |

### PDB 1sgv chain A domain 2

Region: 20 - 101
Aligned: 69
Modelled: 82
Confidence: 97.5%
Identity: 29%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
18 |
| c2ey4A_ |

### PDB 2ey4 chain A

Region: 20 - 101
Aligned: 69
Modelled: 82
Confidence: 97.5%
Identity: 32%
PDB header:isomerase/biosynthetic protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of a cbf5-nop10-gar1 complex

Phyre2
19 |
| d1r3ea2 |

### PDB 1r3e chain A domain 2

Region: 21 - 101
Aligned: 68
Modelled: 81
Confidence: 97.5%
Identity: 22%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
20 |
| c2apoA_ |

### PDB 2apo chain A

Region: 20 - 101
Aligned: 69
Modelled: 82
Confidence: 97.3%
Identity: 30%
PDB header:isomerase/rna binding protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2i82D_ |
|  | 100.0 | 97 | PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
2 | d1v9fa_ |
|  | 100.0 | 38 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
3 | c1v9fA_ |
|  | 100.0 | 38 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli
4 | c1qyuA_ |
|  | 100.0 | 36 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
5 | d1v9ka_ |
|  | 100.0 | 39 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
6 | c1vioA_ |
|  | 100.0 | 18 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase
7 | c1kskA_ |
|  | 100.0 | 16 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua
8 | c2omlA_ |
|  | 100.0 | 18 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
9 | c2olwB_ |
|  | 100.0 | 18 | PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
10 | c3dh3C_ |
|  | 100.0 | 14 | PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
11 | d1vioa1 |
|  | 100.0 | 19 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
12 | d1kska4 |
|  | 100.0 | 17 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
13 | c2gmlA_ |
|  | 100.0 | 16 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf
14 | d1k8wa5 |
|  | 97.6 | 17 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
15 | d2ey4a2 |
|  | 97.6 | 30 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
16 | d2apoa2 |
|  | 97.5 | 32 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
17 | d1sgva2 |
|  | 97.5 | 29 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
18 | c2ey4A_ |
|  | 97.5 | 32 | PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
19 | d1r3ea2 |
|  | 97.5 | 22 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
20 | c2apoA_ |
|  | 97.3 | 30 | PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
21 | c3uaiA_ |
| not modelled | 97.3 | 29 | PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
22 | c1k8wA_ |
| not modelled | 97.2 | 19 | PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
23 | c1sgvA_ |
| not modelled | 97.2 | 28 | PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub)
24 | c1ze2B_ |
| not modelled | 95.6 | 27 | PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate
25 | c2k6pA_ |
| not modelled | 94.6 | 14 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423
26 | c1f5nA_ |
| not modelled | 31.0 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
27 | c2zodB_ |
| not modelled | 23.0 | 16 | PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus
28 | d2zoda2 |
| not modelled | 22.1 | 17 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
29 | c2zauB_ |
| not modelled | 21.1 | 23 | PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
30 | c1mzwB_ |
| not modelled | 16.9 | 38 | PDB header:isomerase Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein; PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide
31 | d1vjpa1 |
| not modelled | 16.8 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
32 | d1f46a_ |
| not modelled | 14.6 | 18 | Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain
33 | d1emsa1 |
| not modelled | 13.2 | 29 | Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
34 | d1gr0a1 |
| not modelled | 12.4 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
35 | d1fita_ |
| not modelled | 11.7 | 6 | Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
36 | d1k8ga2 |
| not modelled | 11.6 | 14 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
37 | c2p14A_ |
| not modelled | 11.1 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:heterodimeric restriction endonuclease r.bspd6i small PDBTitle: crystal structure of small subunit (r.bspd6i2) of the heterodimeric2 restriction endonuclease r.bspd6i
38 | d1jb7a2 |
| not modelled | 10.9 | 14 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
39 | c3n1tE_ |
| not modelled | 9.7 | 38 | PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex
40 | d1rzya_ |
| not modelled | 9.7 | 25 | Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
41 | c1u1iC_ |
| not modelled | 9.5 | 18 | PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus
42 | c3l7xA_ |
| not modelled | 9.3 | 13 | PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159
43 | d1okia1 |
| not modelled | 8.1 | 20 | Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Crystallins/Ca-binding development proteins
44 | c2lkyA_ |
| not modelled | 7.7 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
45 | c1gr0A_ |
| not modelled | 7.5 | 25 | PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: myo-inositol 1-phosphate synthase from mycobacterium2 tuberculosis in complex with nad and zinc.
46 | c2do5A_ |
| not modelled | 7.5 | 31 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:splicing factor 3b subunit 2; PDBTitle: solution structure of the sap domain of human splicing2 factor 3b subunit 2
47 | c3cinA_ |
| not modelled | 7.4 | 16 | PDB header:isomerase Chain: A: PDB Molecule:myo-inositol-1-phosphate synthase-related protein; PDBTitle: crystal structure of a myo-inositol-1-phosphate synthase-related2 protein (tm_1419) from thermotoga maritima msb8 at 1.70 a resolution
48 | c3o0mB_ |
| not modelled | 7.2 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis
49 | d1guqa2 |
| not modelled | 7.2 | 17 | Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase
50 | d2al1a1 |
| not modelled | 6.8 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase
51 | c2oi2A_ |
| not modelled | 6.5 | 17 | PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate
52 | d2aaaa1 |
| not modelled | 6.4 | 21 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
53 | c3p0tB_ |
| not modelled | 6.4 | 25 | PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis
54 | c2kvcA_ |
| not modelled | 6.0 | 27 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
55 | c1emsB_ |
| not modelled | 5.8 | 33 | PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein
56 | c2voiB_ |
| not modelled | 5.8 | 27 | PDB header:apoptosis Chain: B: PDB Molecule:bh3-interacting domain death agonist p13; PDBTitle: structure of mouse a1 bound to the bid bh3-domain
57 | d2dk4a1 |
| not modelled | 5.7 | 23 | Fold:LEM/SAP HeH motif Superfamily:PRP4-like Family:PRP4-like
58 | d2oika1 |
| not modelled | 5.5 | 50 | Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0