Phyre 2 alignment of P75718 with c3eyyA_

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Job Description | P75718
Confidence | 91.47% | Date | Thu Jan 5 12:13:28 GMT 2012
Rank | 44 | Aligned Residues | 73
% Identity | 12% | Template | c3eyyA_
PDB info | PDB header:transport | Chain: A: PDB Molecule:putative iron uptake regulatory protein; | PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . |  |  |  |  |  | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | E | A | I | I | H | Y | L | G | T | H | K | S | F | C | A | Q | D | V | A | A | V | T | . | . | . | . | . | G | A | T | V | T | S | I | N | Q | A | A | A | K | M | A | R | A | G | I | L | V | V | D | G | K | V | W | R | T | V | Y | Y | R | F | A | T | R | E | E | W | E | G | K | V | S | T | N | L | I | F | K | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | Q | L | V | L | E | A | V | D | T | L | E | H | A | T | P | D | D | I | L | G | E | V | R | K | T | A | S | G | I | N | I | S | T | V | Y | R | T | L | E | L | L | E | E | L | G | L | V | S | H | A | H | L | G | H | G | A | P | T | Y | H | L | A | . | . | . | . | . | D | R | H | H | H | I | H | L | V | C | R | D
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | S | S | B |  |  |  |  |  |  |  |  |  |  | T | T |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  | T | . | . | . | . | . | T | S |  |  | S |  |  |  |  |  | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |  |  |  |  |  | . | . | . | . | . | . | 90 | . | . | . | . | .
|  | 79 | 80 | .
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | C | R | Q
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | C | T | N
Template Known Secondary structure |  | S | S |
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 96 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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