HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/84954410c0e0782d/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/84954410c0e0782d/query.hhm DATE Sun Jan 15 22:51:20 2012 LENG 132 match states, 132 columns in multiple alignment FILT 17 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4263 0.1898 SEQ >ss_pred CEEEECHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEE EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9023311389860755689999999997415888200168743437442102220461256663378878866665432079548999543348780589 99536757887311445799999999987439 >Consensus xrvfxxxxixxxxxxxxxxxlxxdfxxykxxgxlPxxFGrDxxxxxpxxxxlxxxaxvxhiHLxxxexxwxxxxxQxxRtSDxxxLVYcqgxxdxnxYli laIixPxAHxxxxxxxxmxxlxxxAExFrnkf >batch____ MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRTNDEAHLVYCQGAFDEQAWLL IAILKPEPHKLARDNNQMHKIGKMAEAFRMRF >UniRef50_Q7N2D4(2-134:134) Similar to unknown protein YafO of Escherichia coli n=3 Tax=Gammaproteobacteria RepID=Q7N2D4_PHOLL E=2e-10 s/c=0.50 id=37% cov=96% VRIFTYSNLKDALGEQKTKALVDDFKAYKEGKGLPITFGRDVPYKFTNNRSYLELQ-----HLHYRESGFSLKLVQFRRTSGYV-LVYCSGFFDRSTYLL IAIIKHWNHNESndivgtdRDIGLMDELEKIAERFREKF >UniRef50_A1JQH6(3-102:103) Putative uncharacterized protein n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JQH6_YERE8 E=2e-08 s/c=0.60 id=33% cov=75% ---------------------------WKNGGPLPPEFGSEGQWEDNRK---LCDSFVYKIHIHLPDDpPWPPRLAVASRKSDN-YLVYARHWLDPNKYQ LISIMSPEAHALAR-TSYLAELERRAEEFQN-- >UniRef50_A6VYA2(73-168:168) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VYA2_MARMS E=6e-06 s/c=0.54 id=25% cov=70% ------------------------------------YFGKDKPNDRPDEAVY---SDIWHIHIATTSTELNHKnwrnKAQEFRTSDR-FIIYCRGLFNQN YFCILAVEDPPAHDKLNDAIIQSNMIAAAKRFREKY >UniRef50_Q2SIU7(3-157:157) Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIU7_HAHCH E=8e-27 s/c=0.78 id=31% cov=98% IKVFEVPKIREARKQNPyLSQLIKDFSAYKNGGFI-SYFGRDTLYLEP--RSLMNDAKVLHIHLLHENHKWYKAQQEAIKSGREPidnymlrcdvnppef drALIYTQGRKNKNYYLILDFLNGYAHarttisgkNRLNNTIYMEELVKKAEDFRNAF >UniRef50_Q1V891(23-145:146) Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1V891_VIBAL E=3e-23 s/c=0.89 id=30% cov=83% ------------------DELEADLLKYFDRIATPWYLGRDARMDRPDSAI---KAELWHMHLFTPfkkdgsartEREWKFErggrpLRQYYRTSDR-WL IYTRGLMDSEHYCVVGIADPTAHKSCNSPAYMDKFVQAAEDFKNK- >UniRef50_B4F1B8(28-121:136) Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B4F1B8_PROMH E=6e-09 s/c=0.66 id=29% cov=50% ------------------------------------------------------------VHIRTPNEkPWDGETRQAVRVSDN-FLVFCKHCMYDDYYQ ILAIITPDAH--ARSAALLPILADMAETY---- >UniRef50_B8F4F2(3-128:140) Hypothetical phage protein n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F4F2_HAEPS E=3e-06 s/c=0.42 id=22% cov=70% ----------------------------------PSTIGNYGRFEE-NPRSLL--AGIHKLHVAVSEADFTKWQGKAgqSRKSDN-YLVYAKHDFEDDVY LILDFISPDAHQRIK--SVLADLVLIAEEFQETF >UniRef50_Q2SMU2(3-134:134) Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SMU2_HAHCH E=3e-24 s/c=0.85 id=28% cov=97% VKLFYGKDIEYQKNIPAVKKVIDAFEYYVETGDPGKMFGKDVLTMSPK---LAWEEKVKHVHLLD-EKRFRVEKlhlrIQDKRTSD-AFLLYCPGYLNPD YYMLLTIIWNNGHEFLRTEEKTLKsYAEEALEFRMKW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 1464 * * 1956 * * * * * * 1396 * * 1 0 * * * * * * 2693 0 0 R 2 * * * * * * * * 1341 * * * * * 724 * * * * * 2 0 * * * * * * 2693 0 0 V 3 * * * * * * * 2495 * 2304 * * * * * * * 689 * * 3 0 * * * * * * 2693 0 0 F 4 * * * * 0 * * * * * * * * * * * * * * * 4 0 * * * * * * 2693 0 0 K 5 * * * 2380 * * * * 1224 * * * * * * * 2495 * * 2304 5 0 * * * * * * 2693 0 0 T 6 * * * * * 2304 * * * * * * * * * 2553 1956 2380 * 2495 6 0 * * * * * * 2693 0 0 K 7 * * * * * * * * 665 * * * 2380 * * 2495 * * * * 7 0 * * * * * * 2693 0 0 L 8 * * 2304 * * * * * 2380 1956 * 2495 * 2553 * * * * * * 8 0 * * * * * * 2693 0 0 I 9 * * * * * * * 282 * 2495 * * * * * * * * * * 9 0 * * * * * * 2693 0 0 R 10 * * * 2304 * * * * 2495 * * * * * 689 * * * * * 10 0 * * * * * * 2693 0 0 L 11 * * 2495 2380 * * * * * 1956 * * * 2553 * * * * * 2304 11 0 * * * * * * 2693 0 0 Q 12 1436 * * * * * * * * * * * * 665 * * * * * * 12 0 * * * * * * 2693 0 0 L 13 * * * * * * * * 2304 724 * * * * 2380 * * * * * 13 0 * * * * * * 2693 0 0 T 14 * * * * * 2495 * * 2380 * * 2304 * * * * 1224 * * * 14 0 * * * * * * 2693 0 0 A 15 1956 * 2553 2495 * * * 2304 * * * * * 2380 * * * * * * 15 0 * * * * * * 2693 0 0 E 16 * * * 1956 * * * 2553 * * * 2380 2304 2495 * * * * * * 16 0 * * * * * * 2693 0 0 E 17 2304 * * 1224 * * * * 2495 * * * 2380 * * * * * * * 17 308 2380 * 0 * * * 2693 1000 0 L 18 * * * * * * * * * 689 * * * * * * 2495 2304 * * 18 0 * * * * * * 2693 0 0 D 19 * * 906 * * * * * 1687 * * * * * * 2682 * * * * 19 0 * * * * * * 2961 0 0 A 20 980 * * 2577 * * * * 2558 * * * * 2682 * * * * * * 20 0 * * * * * * 2961 0 0 L 21 * * * * * * * * * 239 * * * * * * * 2713 * * 21 0 * * * * * * 3095 0 0 T 22 * * * 2756 * * * 1807 * * * * * * * * 2348 1435 * * 22 0 * * * * * * 3095 0 0 A 23 1538 * 1334 * * * * * 1949 * * * * * * * * * * * 23 0 * * * * * * 3095 0 0 D 24 2713 * 239 * * * * * * * * * * * * * * * * * 24 0 * * * * * * 3095 0 0 F 25 * * * * 231 * * * * 2756 * * * * * * * * * * 25 0 * * * * * * 3095 0 0 I 26 * * * 2713 * * * 1665 1995 2756 * * * * * 2909 * * * * 26 0 * * * * * * 3095 0 0 S 27 1954 * * * * * * 3071 2756 * * * * * 2990 2348 * * * 2713 27 0 * * * * * * 3095 0 0 Y 28 * * * * * * * * * * * * * * * * * * 2337 318 28 0 * * * * * * 3487 0 0 K 29 * * * * 3104 * * * 390 * * * * * * * * 3049 * * 29 0 * * * * * * 3487 0 0 R 30 * * 3104 2160 * * * * * * * 2285 * * 1947 2355 * * * * 30 0 * * * * * * 3487 0 0 D 31 * * 2666 * * 1297 * * * * * * * * 3104 * 1648 * * * 31 0 * * * * * * 3487 0 0 G 32 3297 * * 3337 * 786 * 3104 3281 * * * * * * * * * * * 32 0 * * * * * * 3487 0 0 V 33 3104 * 3049 * 3197 2309 * * * 3297 * * 3378 * * * 3373 2666 * * 33 0 * * * * * * 3487 0 0 L 34 * * * * * * * 3197 * 850 * * 3049 * * * 3104 3337 * * 34 167 * 3197 * * * * 3487 0 0 P 35 * * * * * 3127 * * * * * * 175 * * * * * * * 35 0 * * * * 0 * 3608 0 1000 D 36 * * 1694 * * * * 3493 3266 * * * 3761 * * 1615 * * 3351 * 36 0 * * * * * * 3733 0 0 I 37 * * * 3890 * * * 2924 * 3647 3400 * * * * * 2177 3784 * 1589 37 0 * * * * * * 3886 0 0 F 38 * * * * 365 * * 2837 * 3585 * * * * * * * * * * 38 0 * * * * * * 3886 0 0 G 39 * * * * * 0 * * * * * * * * * * * * * * 39 0 * * * * * * 3886 0 0 R 40 * * * * * * * * 2445 * * 2837 * * 716 3890 * * * * 40 0 * * * * * * 3886 0 0 D 41 * * 335 3890 * * * * * * * * * * * * * * 3775 3902 41 0 * * * * * * 3886 0 0 A 42 2217 * * 3647 * 1836 * * 3493 * * * * * * * 2641 2507 * * 42 0 * * * * * * 3886 0 0 L 43 3775 * * * * * * * * 1700 * * 2557 2836 2120 3662 * * * * 43 0 * * * * * * 3886 0 0 Y 44 * * * * 2837 * * * * * 3585 3493 * * * * 3400 * 2836 1142 44 0 * * * * * * 3886 0 0 D 45 * * 1382 1836 * * 3662 * 3624 3620 3400 * * * * * * * * * 45 0 * * * * * * 3886 0 0 D 46 * * 2328 2176 3624 * 2714 * * * * * * * 1993 3400 * * * * 46 217 * 2842 * * * * 3886 0 0 S 47 * * * * * * * * * * * 2335 819 * * 2802 3447 * * * 47 484 * 1811 * * 0 * 3717 0 1516 F 48 * * 1657 * 2552 * * * 3055 * * 1711 * * 3529 * * * * * 48 185 * 3055 * * * 0 3545 0 2067 T 49 * * * 2944 * * * * 3367 * * 3098 3028 * * 2193 1666 * * * 49 147 * 3367 * * 2036 403 3321 0 2455 W 50 2090 * * * 3164 * * * * * * * * * 1101 * * * 2415 * 50 0 * * * * 1005 995 3428 0 2508 P 51 * * * * * * * 3380 * * * * 1204 * * 1886 3394 3264 * * 51 146 * 3380 * * 1000 1000 3621 0 1673 L 52 * * 3464 * * * * * * 922 * * * * 3535 * * 3401 * 2317 52 333 * 2277 * * 1014 986 3702 0 1650 I 53 2199 * * * * * * 1886 * 1296 3261 * * * * * * * * * 53 139 * 3444 * * * 0 3412 0 2083 K 54 * 3116 * 2151 * * * * 2514 * 2966 3105 * * 3120 * * * 2997 * 54 0 * * * * 1041 960 3384 0 2442 F 55 * * 1160 3193 2778 * * * 3215 2400 * * * * * * * * * * 55 0 * * * * 0 * 3669 0 1710 E 56 1382 * * 2142 * * * * * * * 3647 * 3624 * 2127 * * * * 56 122 * 3624 * * * * 3886 0 0 R 57 * * 3376 2507 3760 2646 * * 2384 3658 * 3685 * * 2781 * * * * * 57 0 * * * * * 0 3744 0 1000 V 58 * * * * * * * 2014 * 2508 * * * * * * * 795 * * 58 0 * * * * * 0 3744 0 1000 A 59 2781 * * * * * 3765 * 2458 3492 2534 * * * * * * * 2427 2722 59 0 * * * * * 0 3744 0 1000 H 60 * * * * * * 523 * 1716 * * * * * * * * * * * 60 0 * * * * * 0 3744 0 1000 I 61 * * * * * * * 1254 * 1847 3617 * * * * * * 2178 * * 61 0 * * * * 0 * 3883 0 1000 H 62 * * * * * * 0 * * * * * * * * * * * * * 62 0 * * * * * * 4023 0 0 L 63 * * * * * * * 1709 * 779 * * * * * * * 3168 * * 63 0 * * * * * * 4023 0 0 A 64 1333 * * * 3725 * 3045 * * 2616 * * * 3838 2530 * * * * * 64 0 * * * * * * 4023 0 0 N 65 * * 2721 * * * 3618 3033 * 4418 4067 3007 * * * * 2131 3168 * 3749 65 123 * 3613 * * * * 4023 0 0 E 66 * * * 2780 * 3597 * * * * * * 1334 * 3625 3052 3413 3647 * * 66 124 3605 * 3170 170 0 * 3859 1000 1000 N 67 * * 2580 1366 * * * * * * * 1464 * * * 3602 * * * * 67 0 * * * * * * 4069 0 0 N 68 4297 * 4511 1810 * * 3663 * 3072 * * 2361 * * 3793 3774 3602 * * * 68 260 2599 * 0 * * * 4069 1722 0 P 69 * * 3246 2694 * 3774 * * 2719 * * * 1198 * 3657 * * * * * 69 63 4538 * 0 * * * 4069 1000 0 F 70 * * * * 1144 * * * * 3602 * * * * * * * * 1104 * 70 109 3777 * 3322 152 * * 4069 1000 0 P 71 * * 3960 3165 * * 4538 * 3793 * * 3602 1881 * 3657 3774 3014 * * 3663 71 81 4197 * 1000 1000 * * 4069 1000 0 P 72 * * * 4538 3793 3960 3602 * 2051 2842 * * 2068 * * * 4659 3657 * * 72 0 * * * * * * 4069 0 0 Q 73 3663 * * 2213 * * 3913 * 2252 * * 3597 * 2361 4511 * * * 4297 4133 73 242 2694 * 2184 359 * * 4069 1521 0 L 74 * 3913 * * * * * * 1531 1686 4538 * * 2946 * * 3960 4659 * * 74 119 3657 * 2000 415 * * 4069 1000 0 R 75 2986 * * * * 4297 * 2779 * 3777 4659 * 3322 3663 1954 * 4197 3774 * * 75 0 * * * * * * 4069 0 0 Q 76 * * * 3663 * 4197 * * 4297 4659 * * * 450 * * * 4511 * * 76 0 * * * * * * 4069 0 0 F 77 2071 * 3657 3602 1937 * 4659 3322 * * * * * 4197 * * * * 3777 3793 77 75 4297 * 1000 1000 * * 4069 1000 0 S 78 3913 * 4133 * 3602 * 3777 3663 3657 * * 3409 * 4538 3774 2208 * 3960 * 3793 78 0 * * * * * * 4069 0 0 R 79 * * * * * * * * 2196 * * * * * 355 * * * * * 79 0 * * * * * * 4069 0 0 T 80 * 4133 * * * * * * 1745 * * * * * * 3663 996 3960 * * 80 0 * * * * * * 4069 0 0 N 81 * * * * * 3663 * * * * * 3038 * * * 323 * * * * 81 0 * * * * * * 4069 0 0 D 82 * * 450 * * 3774 * * * * * 3108 * * 3663 * * * * * 82 227 * 2779 * * * * 4069 0 0 E 83 * * * 2075 * * 4311 * * * * 1470 * * 2482 * 3532 * * 3540 83 1287 * 761 * * 0 * 3797 0 1653 A 84 877 * * * * * * * * * * * 2659 * * * 2718 2784 * * 84 849 2659 1803 4087 87 0 * 2821 1000 3015 H 85 3401 * * * 1956 * 2152 * * * * * * * * * * * 3559 1566 85 0 * * * * 0 * 3796 0 1502 L 86 * * * * * * * 3116 * 177 * * * * * * * * * * 86 0 * * * * * * 4156 0 0 V 87 * * * * * * * 1693 * 3691 * * * * * * * 705 * * 87 0 * * * * * * 4156 0 0 Y 88 * * * * 4012 * * * * * * * * * * * * * * 92 88 0 * * * * * * 4156 0 0 C 89 2314 966 * * * * * * * * * * * * * * 2366 3428 * * 89 0 * * * * * * 4156 0 0 Q 90 * * * * * * * * 2673 * * * 2814 1296 2165 3821 * * * * 90 0 * * * * * * 4156 0 0 G 91 3949 * * * * 1031 1417 * * * * 3807 * * * * * * * * 91 0 * * * * * * 4156 0 0 A 92 2433 4012 4444 4355 3178 * * * * 2224 * * * * 3677 * * * 2490 3691 92 0 * * * * * * 4156 0 0 F 93 * * * * 1238 * * * 3677 2264 2018 * * * * * * * * 4539 93 0 * * * * * * 4156 0 0 D 94 * * 1240 2894 * * * * * * * 2113 * * * * 3949 * * 2774 94 0 * * * * * * 4156 0 0 E 95 * * 2760 1817 * * * * 3677 * * * 2158 3726 3821 3057 * * * * 95 0 * * * * * * 4156 0 0 Q 96 * * 2432 3900 * * * * 4234 * * 990 * 3054 * 3821 * * * * 96 0 * * * * * * 4156 0 0 A 97 3054 3949 * * * * 3184 * 4621 * * * * * 3150 4234 3064 4444 * 1587 97 0 * * * * * * 4156 0 0 W 98 * * * * 2202 * * * * * * * * * * * * * 3054 594 98 0 * * * * * * 4156 0 0 L 99 * 2456 * * * * * * * 1221 3691 * * 2059 * 3807 * * * * 99 0 * * * * * * 4156 0 0 L 100 * * * * * * * 1353 * 1167 * * * * * * * 2616 * * 100 0 * * * * * * 4156 0 0 I 101 * * * * * * * 1331 * 1226 3214 * * * * * * 3900 * * 101 0 * * * * * * 4156 0 0 A 102 1046 * 2233 * * 3900 * 3949 * * * * * * * 3415 3691 * * * 102 0 * * * * * * 4156 0 0 I 103 * * * * 2531 * * 651 * 3807 * * * * * * * 3076 * * 103 0 * * * * * * 4156 0 0 L 104 3900 * * 3726 3807 * * 1713 * 1722 2889 * * * * * * 4539 * * 104 0 * * * * * * 4156 0 0 K 105 * * 2270 * * * 3807 * 3056 * 4539 2746 * * * 2466 2732 * 3691 * 105 0 * * * * * * 4156 0 0 P 106 * * * * * 3677 3821 * * 3819 * 3691 509 * * * * * * * 106 0 * * * * * * 4156 0 0 E 107 * * 2062 3472 * * * * 4234 * * 2400 2833 * * * 3900 3807 3821 3677 107 0 * * * * * * 4156 0 0 P 108 451 * * * * 3691 * * * 3819 * 3821 4336 * * * * * * * 108 0 * * * * * * 4156 0 0 H 109 * * * * * * 106 3819 * * * * * * * * * * * * 109 218 3677 4012 3000 193 * * 4156 1000 0 K 110 4519 * 3642 2435 * * * * 2575 * 3745 1740 * 3270 * 4446 * * * * 110 0 * * * * * 0 4104 0 1000 L 111 * * * 3745 3603 * * * 2303 2331 * * * * 1989 2778 4506 * * * 111 0 * * * * 0 * 4104 0 1000 A 112 1304 3774 * * * * * 3244 * 1703 * * * * * 3790 * 4762 * * 112 108 3790 * 2807 222 * * 4048 1000 0 R 113 * * * 3807 * * * * 2265 * * 1551 * * 1688 * * * 3864 * 113 422 * 1978 * * * * 4048 0 0 D 114 * * 1926 * * * * 3488 * * * 2263 * * * 1813 2692 * * * 114 80 * 4217 * * 788 1248 3688 0 2048 N 115 2522 * * 3487 * * 3591 3593 * * * 4102 3606 * * 3700 1500 * * * 115 0 * * * * 669 1430 3865 0 1625 N 116 2236 * * 3613 * 3749 * 2579 * * * 2970 * * * 1919 3792 * * * 116 0 * * * * 0 * 4023 0 1000 Q 117 * * * * 3285 * * 3679 2296 2878 * * * 4298 3180 * * 3061 * 2332 117 0 * * * * * * 4048 0 0 M 118 * 3807 * * * * * * * 1496 1258 * * 3679 * * 3683 * * * 118 0 * * * * * * 4048 0 0 H 119 2477 * 2782 3647 * * 4298 3807 * 2771 * * 3971 * 3767 2917 4139 * * * 119 0 * * * * * * 4048 0 0 K 120 * * 3244 1735 * * * 3971 1872 * * 3679 3864 * * * 4762 3767 * * 120 117 3683 * 0 * * * 4048 1000 0 I 121 * * * * 3774 * * 3249 * 669 3679 * * * * * * * * 3124 121 0 * * * * * * 4048 0 0 G 122 2217 * * 2181 * 2388 * 3121 * * * * * * * * * 1952 * * 122 0 * * * * * * 4048 0 0 K 123 3679 * 3313 3683 * 3767 * 3864 1643 3244 * * * 3774 3287 * * * * * 123 0 * * * * * * 4048 0 0 M 124 2726 * * 3683 4202 * * 3018 3647 * 2183 * * * 2753 * * * 3807 3767 124 0 * * * * * * 4048 0 0 A 125 198 * * * * * * * * * * * * 3807 * * * 4139 * * 125 0 * * * * * * 4048 0 0 E 126 * * * 516 * * * * 2742 3683 * * * * 3767 * * * * * 126 0 * * * * * * 4048 0 0 A 127 4298 * 2143 1850 * * * 4202 3864 * * 4762 * * 2173 * 3971 * * * 127 0 * * * * * * 4048 0 0 F 128 * * * * 95 * * * * * * * * * * * * * * 3971 128 0 * * * * * * 4048 0 0 R 129 * * * * * * * * 3410 * * * * 1837 676 * * * * * 129 0 * * * * * * 3795 0 0 M 130 * * * 1951 * * * * * * 2463 837 * * * * * * * * 130 0 * * * * * * 3795 0 0 R 131 3057 * * * * * * * 1132 * * 3276 * * 2281 * 3127 * * * 131 0 * * * * * * 3588 0 0 F 132 * * * * 733 * * * * * * * * * * * * * 2906 1917 132 0 * * 0 * * * 3404 0 0 //