Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	N	A	K	P	V	Y	K	R	I	L	L	K	L	S	G	E	A	L	Q	G	T	E	G	F	G	I	D	A	S	I	L	D	R	M	A	Q	E	I	K	E	L	V	E	L	G	I	Q	V	G	V	V	I	G	G	G	N	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?												?	?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	R	G	A	G	L	A	K	A	G	M	N	R	V	V	G	D	H	M	G	M	L	A	T	V	M	N	G	L	A	M	R	D	A	L	H	R	A	Y	V	N	A	R	L	M	S	A	I	P	L	N	G	V	C	D	S	Y	S	W	A
Secondary structure
SS confidence
Disorder										?		?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	A	I	S	L	L	R	N	N	R	V	V	I	L	S	A	G	T	G	N	P	F	F	T	T	D	S	A	A	C	L	R	G	I	E	I	E	A	D	V	V	L	K	A	T	K	V	D	G	V	F	T	A	D	P	A	K	D	P	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	T	M	Y	E	Q	L	T	Y	S	E	V	L	E	K	E	L	K	V	M	D	L	A	A	F	T	L	A	R	D	H	K	L	P	I	R	V	F	N	M	N	K	P	G	A	L	R	R	V	V	M	G	E	K	E	G	T	L	I	T
Secondary structure
SS confidence
Disorder															?	?																																											?		?
Disorder confidence
		.
Sequence		E
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bne chain A domain 1 Region: 5 - 241 Aligned: 234 Modelled: 237 Confidence: 100.0% Identity: 100% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1ybd chain A domain 1 Region: 8 - 239 Aligned: 232 Modelled: 232 Confidence: 100.0% Identity: 51% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2a1f chain A domain 1 Region: 5 - 240 Aligned: 229 Modelled: 236 Confidence: 100.0% Identity: 77% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1z9d chain A domain 1 Region: 7 - 240 Aligned: 234 Modelled: 234 Confidence: 100.0% Identity: 46% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 3ek5 chain A Region: 5 - 240 Aligned: 236 Modelled: 236 Confidence: 100.0% Identity: 56% PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium Phyre2 PDB 2jjx chain C Region: 9 - 241 Aligned: 233 Modelled: 233 Confidence: 100.0% Identity: 44% PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) Phyre2 PDB 3nwy chain B Region: 9 - 240 Aligned: 226 Modelled: 232 Confidence: 100.0% Identity: 47% PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis Phyre2 PDB 2va1 chain A Region: 9 - 241 Aligned: 224 Modelled: 233 Confidence: 100.0% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum Phyre2 PDB 2j5t chain F Region: 9 - 240 Aligned: 231 Modelled: 232 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate Phyre2 PDB 2w21 chain A Region: 10 - 239 Aligned: 229 Modelled: 230 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. Phyre2 PDB 3l76 chain B Region: 12 - 241 Aligned: 214 Modelled: 230 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis Phyre2 PDB 2brx chain A domain 1 Region: 11 - 239 Aligned: 211 Modelled: 217 Confidence: 100.0% Identity: 29% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2ij9 chain A domain 1 Region: 11 - 240 Aligned: 207 Modelled: 217 Confidence: 100.0% Identity: 33% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2ako chain A domain 1 Region: 10 - 239 Aligned: 227 Modelled: 230 Confidence: 100.0% Identity: 15% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2j4k chain C Region: 11 - 239 Aligned: 200 Modelled: 219 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution Phyre2 PDB 3ab4 chain K Region: 12 - 240 Aligned: 199 Modelled: 228 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine Phyre2 PDB 3c1n chain A Region: 11 - 241 Aligned: 215 Modelled: 231 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine Phyre2 PDB 2hmf chain A domain 1 Region: 11 - 241 Aligned: 215 Modelled: 231 Confidence: 100.0% Identity: 26% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2ogx chain B Region: 11 - 240 Aligned: 213 Modelled: 230 Confidence: 100.0% Identity: 22% PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) Phyre2 PDB 2j0w chain A domain 1 Region: 10 - 241 Aligned: 213 Modelled: 232 Confidence: 100.0% Identity: 23% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 1 d2bnea1 2 d1ybda1 3 d2a1fa1 4 d1z9da1 5 c3ek5A_ 6 c2jjxC_ 7 c3nwyB_ 8 c2va1A_ 9 c2j5tF_ 10 c2w21A_ 11 c3l76B_ 12 d2brxa1 13 d2ij9a1 14 d2akoa1 15 c2j4kC_ 16 c3ab4K_ 17 c3c1nA_ 18 d2hmfa1 19 c2ogxB_ 20 d2j0wa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2bnea1 100.0 100 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 2 d1ybda1 100.0 51 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 3 d2a1fa1 100.0 77 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 4 d1z9da1 100.0 46 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 5 c3ek5A_ 100.0 56 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 6 c2jjxC_ 100.0 44 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 7 c3nwyB_ 100.0 47 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 8 c2va1A_ 100.0 35 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 9 c2j5tF_ 100.0 18 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 10 c2w21A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 11 c3l76B_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 12 d2brxa1 100.0 29 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 13 d2ij9a1 100.0 33 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 14 d2akoa1 100.0 15 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 15 c2j4kC_ 100.0 27 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 16 c3ab4K_ 100.0 26 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 17 c3c1nA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 18 d2hmfa1 100.0 26 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 19 c2ogxB_ 100.0 22 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 20 d2j0wa1 100.0 23 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 21 c2rd5A_ not modelled 100.0 15 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 22 d2bufa1 not modelled 100.0 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 23 d2ap9a1 not modelled 100.0 23 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 24 c2v5hB_ not modelled 100.0 14 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 25 d1e19a_ not modelled 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 26 c2j0wA_ not modelled 100.0 24 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 27 d1b7ba_ not modelled 100.0 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 28 c2ogxA_ not modelled 100.0 18 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 29 d2cdqa1 not modelled 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 30 c3k4yB_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 31 d1gs5a_ not modelled 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 32 c2e9yA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 33 c3ll9A_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 34 c2cdqB_ not modelled 100.0 26 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 35 d2btya1 not modelled 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 36 c3ll5C_ not modelled 100.0 16 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 37 c3d40A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 38 c3kzfC_ not modelled 100.0 21 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 39 c2egxA_ not modelled 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 40 c2r98A_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 41 c3l86A_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 42 d1k1ea_ not modelled 81.5 20 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 43 c3e8mD_ not modelled 75.2 25 PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily 44 c2p9jH_ not modelled 74.3 15 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus 45 c3mmzA_ not modelled 74.3 12 PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680 46 c3ewiB_ not modelled 72.0 8 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 47 c3dnpA_ not modelled 71.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 48 c3mn1B_ not modelled 70.1 13 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 49 d1xpja_ not modelled 59.8 15 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 50 c2r8zC_ not modelled 59.0 12 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 51 c3n07B_ not modelled 53.6 12 PDB header:hydrolase Chain: B: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: structure of putative 3-deoxy-d-manno-octulosonate 8-phosphate2 phosphatase from vibrio cholerae 52 c1xviA_ not modelled 46.3 13 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 53 d1xvia_ not modelled 46.3 13 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 54 d1s2oa1 not modelled 43.4 12 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 55 c3daoB_ not modelled 39.5 16 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphatse; PDBTitle: crystal structure of a putative phosphatse (eubrec_1417) from2 eubacterium rectale at 1.80 a resolution 56 c3gygA_ not modelled 38.6 15 PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis 57 d2fw2a1 not modelled 37.2 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 58 c3tdmD_ not modelled 36.3 16 PDB header:de novo protein Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel PDBTitle: computationally designed tim-barrel protein, halfflr 59 d2obba1 not modelled 34.9 7 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 60 d1nzya_ not modelled 31.3 9 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 61 c2b8eB_ not modelled 31.0 24 PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain 62 d1p3y1_ not modelled 30.2 13 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 63 c2i55C_ not modelled 27.7 20 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 64 c2fbmB_ not modelled 27.0 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:y chromosome chromodomain protein 1, telomeric isoform b; PDBTitle: acetyltransferase domain of cdy1 65 d1y1pa1 not modelled 25.6 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 66 d2b30a1 not modelled 24.4 20 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 67 c3j09A_ not modelled 24.1 21 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 68 c3niwA_ not modelled 23.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron 69 c2qyhD_ not modelled 23.1 16 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical conserved protein, gk1056; PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426 70 c3j08A_ not modelled 23.0 23 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 71 c2dlnA_ not modelled 22.2 28 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 72 d2b8ea1 not modelled 21.6 24 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 73 d1m5wa_ not modelled 21.3 15 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 74 d1g5qa_ not modelled 20.8 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 75 d1wpga2 not modelled 19.8 20 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 76 d2r8oa2 not modelled 19.8 7 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like PP module 77 c2dwcB_ not modelled 18.7 33 PDB header:transferase Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp 78 c3r4cA_ not modelled 18.3 18 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase; PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron 79 c2cunA_ not modelled 18.2 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 80 d1rlma_ not modelled 17.7 19 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 81 d1iowa1 not modelled 17.4 26 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 82 c3n1uA_ not modelled 17.3 10 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 83 d1a9xa3 not modelled 17.2 23 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 84 c3bq9A_ not modelled 17.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 85 d2zdra2 not modelled 16.6 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 86 d1rkqa_ not modelled 15.8 20 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 87 c3cetA_ not modelled 15.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63 88 d1ovma1 not modelled 15.7 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 89 d1jvna1 not modelled 14.7 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 90 c2gsjA_ not modelled 14.4 33 PDB header:hydrolase Chain: A: PDB Molecule:protein ppl-2; PDBTitle: cdna cloning and 1.75a crystal structure determination of2 ppl2, a novel chimerolectin from parkia platycephala seeds3 exhibiting endochitinolytic activity 91 d2ftsa3 not modelled 14.4 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 92 c3q3vA_ not modelled 14.3 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 93 c3iz5K_ not modelled 13.6 32 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 c3mcuF_ not modelled 13.1 25 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 95 d1u02a_ not modelled 13.1 17 Fold:HAD-like Superfamily:HAD-like Family:Trehalose-phosphatase 96 d1nrwa_ not modelled 12.5 16 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 97 c3r6hA_ not modelled 12.4 10 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase, echa3; PDBTitle: crystal structure of an enoyl-coa hydratase (echa3) from mycobacterium2 marinum 98 c3lqkA_ not modelled 12.1 28 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 99 d1vega_ not modelled 11.8 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0