BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (179 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea... 315 5e-85 UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola... 152 4e-36 UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=... 86 7e-16 UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu... 86 8e-16 UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis... 84 3e-15 UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E... 82 1e-14 UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C... 79 5e-14 UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri... 79 6e-14 UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter... 79 7e-14 UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co... 78 1e-13 UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob... 76 4e-13 UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R... 74 2e-12 UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni... 62 7e-09 UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon... 45 0.001 UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon... 44 0.002 UniRef50_A1AAW4 Putative uncharacterized protein n=8 Tax=Enterob... 43 0.006 UniRef50_Q0T563 Putative bacteriophage protein n=2 Tax=Shigella ... 40 0.024 UniRef50_D0KEP7 Prevent-host-death family protein n=18 Tax=Bacte... 40 0.035 UniRef50_P76065 Uncharacterized protein ydaU n=9 Tax=Enterobacte... 40 0.047 >UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS Length = 179 Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 146/179 (81%), Positives = 164/179 (91%) Query: 1 MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60 MSSR+LT DV+GID L+HDH VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL Sbjct: 1 MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60 Query: 61 ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120 +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE Sbjct: 61 SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120 Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179 LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179 >UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5 Length = 164 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%) Query: 4 RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63 ++L D + ++ + +L K+ G++ V N +P FY +TP L ++ LE L Sbjct: 2 KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58 Query: 64 GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123 + LD Q + KF+M+P W PD DFIR AALWG+ L E + ELAS Sbjct: 59 ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106 Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179 FI+YWQAEG FHH+QWQQKLARSLQ R+ S KRD+ + PD +P GFRG Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163 >UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27 Length = 268 Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 54/86 (62%) Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145 GKF M+ W P DF+R+++L G+ L T +ELA F YW AEGK FHH QW+QKLA Sbjct: 178 FGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHHAQWEQKLA 237 Query: 146 RSLQIGRASNGGLPKRDVNTVSEPDS 171 R LQI R + P+ +V + P++ Sbjct: 238 RRLQISRQNKLTSPENNVPHWNSPEA 263 >UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XSL9_KLEP3 Length = 327 Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Query: 75 QEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTT-EELASFIAYWQAEG 132 Q+P+ P V +P+GKF M+ W P D+ RLAA WG+AL EP ELA F AYW++EG Sbjct: 164 QQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFTAYWKSEG 223 Query: 133 KVFHHVQWQQKLARSLQIGRASN 155 KVF +QW+QK ARS+ RA + Sbjct: 224 KVFTQIQWEQKFARSVISARAKS 246 >UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTN9_SODGM Length = 328 Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 36/72 (50%), Positives = 46/72 (63%) Query: 85 PMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKL 144 P+ KF M+ DW D +F R AA WG+ L EP T ELA FI +W+AEGK HH QW+Q L Sbjct: 187 PIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTATELAEFITFWKAEGKAKHHAQWEQAL 246 Query: 145 ARSLQIGRASNG 156 +S++ R G Sbjct: 247 TKSIRRSREFTG 258 >UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli IAI39 RepID=B7NQU2_ECO7I Length = 277 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 48/75 (64%) Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145 +GKF M+ WQP DF+R ++L G+ L T +ELA F YW AEGK +H QW+QKLA Sbjct: 181 LGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELAEFRIYWMAEGKAYHQAQWEQKLA 240 Query: 146 RSLQIGRASNGGLPK 160 R +Q R +G + K Sbjct: 241 RRIQFCRQKSGEVRK 255 >UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26 Length = 345 Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 1/73 (1%) Query: 82 VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140 ++ P+GKF M WQP DF + AA+WG+AL EP T ELA+F YW AEGKVF VQW Sbjct: 194 LSEPIGKFPMTGVWQPSPDFRQRAAVWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQW 253 Query: 141 QQKLARSLQIGRA 153 +QK AR +Q RA Sbjct: 254 EQKFARHVQHVRA 266 >UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1 RepID=A1AE33_ECOK1 Length = 282 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 82 VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140 ++ P+GKF M W P DF R AALWG AL EP T ELA+F YW AEGKVF VQW Sbjct: 178 LSEPIGKFPMTDGWLPSPDFRRRAALWGTALPEPEFTPAELAAFRDYWMAEGKVFTQVQW 237 Query: 141 QQKLARSLQ--IGRASNGG 157 +QK AR + G++ N G Sbjct: 238 EQKFARHVNHIRGKSKNAG 256 >UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica RepID=B5R8P0_SALG2 Length = 332 Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 30 GVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVPMG 87 GV +VF A L EL AR + V+ + Q P + P+G Sbjct: 125 GVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEPIG 184 Query: 88 KFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146 KF+M DW P DF + AA WGVAL EP EL +F YW +EGKVF +QW+QK AR Sbjct: 185 KFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKFAR 244 Query: 147 SLQIGRASNGGLPKRDVNTVSEPDS 171 + RA + + + +PDS Sbjct: 245 HVNHVRAKAKPASRGESHAEIQPDS 269 >UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli RepID=B1LPY0_ECOSM Length = 346 Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 7/83 (8%) Query: 78 QAAPV------AVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQA 130 QAAP+ + P+GKF M W P DF R AALWG+AL E T ELA+F YW A Sbjct: 184 QAAPLVFLDGLSEPIGKFPMTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAA 243 Query: 131 EGKVFHHVQWQQKLARSLQIGRA 153 EGKVF +QW+QK AR + RA Sbjct: 244 EGKVFTQIQWEQKFARHVNHVRA 266 >UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XEX0_9ENTR Length = 317 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 41/68 (60%) Query: 88 KFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARS 147 KF MY W+P DF + AA WG L+EP+ ELA FI YW AEGK H QW+ LA+ Sbjct: 177 KFVMYHGWEPGQDFTQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKG 236 Query: 148 LQIGRASN 155 L+ R N Sbjct: 237 LKHSRLKN 244 >UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38 Length = 310 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 82 VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140 V P+GKF M +W P DF + AA WG+ L +P ELA F AYW +EGKVF +QW Sbjct: 157 VNEPIGKFTMTSNWLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQW 216 Query: 141 QQKLARSLQIGRA 153 +QK AR + + R+ Sbjct: 217 EQKFARHVVLVRS 229 >UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR Length = 91 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 91 MYPDWQPDADFIRLAALWGVAL-REPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M+ +WQP DF+ A WG AL + +L FI YW AEG V HVQW+QK AR L Sbjct: 1 MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60 Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178 + G KR ++ E P P G++ Sbjct: 61 NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88 >UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC81_TOLAT Length = 225 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 15/146 (10%) Query: 43 YAVTPARLAELL--ALEEKLARPGSDVALDDQLYQEPQAAPVAV----PMGK--FAMYPD 94 Y VT +L +L ++ L + + A D +Q+ P+ + P+ + FAM+ + Sbjct: 60 YQVTARQLTQLFDELIQAGLIQLQAATASSDHYHQQYVTLPLLISQVAPLAQQAFAMHTE 119 Query: 95 WQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFH-HVQWQQKLARSLQIGR- 152 WQPD F L L G+ + EE FIAYW + F QW K + L+ R Sbjct: 120 WQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAYWLGRPERFSTQHQWMMKFVKMLKSRRY 178 Query: 153 ----ASNGGLPKRDVNTVSEPDSQIP 174 N G + V T ++ S P Sbjct: 179 QRRQTENIGYQQTTVATAAQNISTEP 204 >UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SJ92_AERS4 Length = 232 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVF-HHVQWQQ 142 +P F M+ W+PD + LA L GV + E+L FIAYW +VF QW Sbjct: 109 LPERPFQMHLQWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGRPEVFDSQHQWML 167 Query: 143 KLARSLQIGR 152 K R+L+ R Sbjct: 168 KFIRALKTRR 177 >UniRef50_A1AAW4 Putative uncharacterized protein n=8 Tax=Enterobacteriaceae RepID=A1AAW4_ECOK1 Length = 286 Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 46/101 (45%), Gaps = 23/101 (22%) Query: 93 PDWQPDA---DFIRLAALWGVALREPVTTE--------ELASFIAYWQAEGKVFHHVQWQ 141 PDW P+ +++R ALR+P+ TE EL F +V H Sbjct: 195 PDWLPETLWHEWVRFRQ----ALRKPIRTEQGANGAIRELEKFRQQGFTPEQVIRH---- 246 Query: 142 QKLARSLQIGRASNGGLPK---RDVNTVSEPDSQIPPGFRG 179 +A Q A G P+ R VNTVS PDS IPPGFRG Sbjct: 247 -SIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG 286 >UniRef50_Q0T563 Putative bacteriophage protein n=2 Tax=Shigella flexneri RepID=Q0T563_SHIF8 Length = 191 Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 29/104 (27%) Query: 93 PDWQPDADFIRLAALWG------VALREPVTTE--------ELASFIAYWQAEGKVFHHV 138 PDW P+ LW ALR+P+ TE EL F +V H Sbjct: 100 PDWLPET-------LWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRH- 151 Query: 139 QWQQKLARSLQIGRASNGGLPK---RDVNTVSEPDSQIPPGFRG 179 +A Q A G P+ R VNTVS PDS IPPGFRG Sbjct: 152 ----SIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG 191 >UniRef50_D0KEP7 Prevent-host-death family protein n=18 Tax=Bacteria RepID=D0KEP7_PECWW Length = 84 Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 28/58 (48%) Query: 1 MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEE 58 M+ +LT I L D + AEG +A+ N PAFY V PA A L+ L E Sbjct: 1 MAFNILTNTAASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAVFAYLMELAE 58 >UniRef50_P76065 Uncharacterized protein ydaU n=9 Tax=Enterobacteriaceae RepID=YDAU_ECOLI Length = 285 Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 38/80 (47%), Gaps = 16/80 (20%) Query: 111 ALREPVTTE--------ELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK-- 160 ALR+P+ TE EL F + +V H +A Q A G P+ Sbjct: 211 ALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRH-----SIANEYQGLFAPKGVRPETL 265 Query: 161 -RDVNTVSEPDSQIPPGFRG 179 R VNTVS PDS IPPGFRG Sbjct: 266 LRQVNTVSLPDSAIPPGFRG 285 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea... 281 7e-75 UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola... 227 1e-58 UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter... 198 5e-50 UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon... 148 1e-34 UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co... 148 1e-34 UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C... 145 8e-34 UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu... 142 5e-33 UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri... 139 3e-32 UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=... 137 1e-31 UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R... 128 6e-29 UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E... 126 5e-28 UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis... 122 3e-27 UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni... 120 3e-26 UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob... 119 3e-26 Sequences not found previously or not previously below threshold: UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon... 94 2e-18 UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B... 67 3e-10 UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacter... 66 7e-10 UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoa... 59 7e-08 UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6... 51 1e-05 UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudom... 49 1e-04 UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reineke... 47 3e-04 UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Sacchar... 46 6e-04 UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine ... 46 8e-04 UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvib... 45 0.001 UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine ... 44 0.002 UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredin... 43 0.004 UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma p... 43 0.005 >UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS Length = 179 Score = 281 bits (719), Expect = 7e-75, Method: Composition-based stats. Identities = 146/179 (81%), Positives = 164/179 (91%) Query: 1 MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60 MSSR+LT DV+GID L+HDH VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL Sbjct: 1 MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60 Query: 61 ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120 +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE Sbjct: 61 SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120 Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179 LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179 >UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5 Length = 164 Score = 227 bits (578), Expect = 1e-58, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%) Query: 4 RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63 ++L D + ++ + +L K+ G++ V N +P FY +TP L ++ LE L Sbjct: 2 KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58 Query: 64 GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123 + LD Q + KF+M+P W PD DFIR AALWG+ L E + ELAS Sbjct: 59 ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106 Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179 FI+YWQAEG FHH+QWQQKLARSLQ R+ S KRD+ + PD +P GFRG Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163 >UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica RepID=B5R8P0_SALG2 Length = 332 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 30 GVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVPMG 87 GV +VF A L EL AR + V+ + Q P + P+G Sbjct: 125 GVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEPIG 184 Query: 88 KFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146 KF+M DW P DF + AA WGVAL EP EL +F YW +EGKVF +QW+QK AR Sbjct: 185 KFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKFAR 244 Query: 147 SLQIGRASNGGLPKRDVNTVSEPDSQ 172 + RA + + + +PDS Sbjct: 245 HVNHVRAKAKPASRGESHAEIQPDST 270 >UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC81_TOLAT Length = 225 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 17/173 (9%) Query: 18 HDHQTVLAKAEGGVVAVFANNAPA--FYAVTPARLAELLA--LEEKLARPGSDVALDDQL 73 H + G +AV P Y VT +L +L ++ L + + A D Sbjct: 33 HQPVPINYPELGRALAVEDPQVPGGFSYQVTARQLTQLFDELIQAGLIQLQAATASSDHY 92 Query: 74 YQEPQAAPVAV----PMGK--FAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127 +Q+ P+ + P+ + FAM+ +WQPD F L L G+ + EE FIAY Sbjct: 93 HQQYVTLPLLISQVAPLAQQAFAMHTEWQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAY 151 Query: 128 WQAEGKVF-HHVQWQQKLARSLQIGR-----ASNGGLPKRDVNTVSEPDSQIP 174 W + F QW K + L+ R N G + V T ++ S P Sbjct: 152 WLGRPERFSTQHQWMMKFVKMLKSRRYQRRQTENIGYQQTTVATAAQNISTEP 204 >UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli RepID=B1LPY0_ECOSM Length = 346 Score = 148 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 35 FANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA----PVAVPMGKFA 90 F + P + P +L AR + + + L + ++ P+GKF Sbjct: 145 FPSKTPKNGSRNPKEPKDLNPTHN--ARESAPTSEQEVLSLQAAPLVFLDGLSEPIGKFP 202 Query: 91 MYPDWQPDADFIRLAALWGVALRE-PVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M W P DF R AALWG+AL E T ELA+F YW AEGKVF +QW+QK AR + Sbjct: 203 MTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAAEGKVFTQIQWEQKFARHVN 262 Query: 150 IGRASNGGLPKRDVNTVSEPDSQ 172 RA + K VN + P Sbjct: 263 HVRAQVKPVSK-GVNHAAAPGGT 284 >UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26 Length = 345 Score = 145 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 51 AELLALEEKLARPGSDVAL--DDQLYQ-EPQAAP-VAVPMGKFAMYPDWQPDADFIRLAA 106 EL R + D L EP+ ++ P+GKF M WQP DF + AA Sbjct: 159 KELNPTHNARMRESATTGELNDASLQTAEPEYLDGLSEPIGKFPMTGVWQPSPDFRQRAA 218 Query: 107 LWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165 +WG+AL EP T ELA+F YW AEGKVF VQW+QK AR +Q RA + K + Sbjct: 219 VWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVQHVRAQVKPVSKGVSHA 278 Query: 166 VS 167 Sbjct: 279 AP 280 >UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XSL9_KLEP3 Length = 327 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Query: 68 ALDDQLYQEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFI 125 A + Q+P+ P V +P+GKF M+ W P D+ RLAA WG+AL EP ELA F Sbjct: 157 AQERNFPQQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFT 216 Query: 126 AYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD--VNTVSEPDSQ 172 AYW++EGKVF +QW+QK ARS+ RA + P + +P + Sbjct: 217 AYWKSEGKVFTQIQWEQKFARSVISARAKSKPQPATGGKSHAGIQPVNT 265 >UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1 RepID=A1AE33_ECOK1 Length = 282 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 57 EEKLARPGSDVA----LDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVAL 112 R G+ + Q+ + ++ P+GKF M W P DF R AALWG AL Sbjct: 149 HIAHVREGAPTSEANSTPLQVAEPEFLDGLSEPIGKFPMTDGWLPSPDFRRRAALWGTAL 208 Query: 113 REP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171 EP T ELA+F YW AEGKVF VQW+QK AR + R + K D + D Sbjct: 209 PEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVNHIRGKSKNAGKSDELDWNNTDW 268 Query: 172 QI 173 Sbjct: 269 IE 270 >UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27 Length = 268 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 54/86 (62%) Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145 GKF M+ W P DF+R+++L G+ L T +ELA F YW AEGK FHH QW+QKLA Sbjct: 178 FGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHHAQWEQKLA 237 Query: 146 RSLQIGRASNGGLPKRDVNTVSEPDS 171 R LQI R + P+ +V + P++ Sbjct: 238 RRLQISRQNKLTSPENNVPHWNSPEA 263 >UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38 Length = 310 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 36 ANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP-VAVPMGKFAMYPD 94 A++A R +L + A ++ P+ V P+GKF M + Sbjct: 110 ASDADKKRTREEKRREDLNPSLKGGADEKNEGDEKPVEPSAPRYLEGVNEPIGKFTMTSN 169 Query: 95 WQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153 W P DF + AA WG+ L +P ELA F AYW +EGKVF +QW+QK AR + + R+ Sbjct: 170 WLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQWEQKFARHVVLVRS 229 Query: 154 SNGGLPKRDVNTVSEPDSQ 172 + N + S Sbjct: 230 KQKPEAGGNENAGVQSGST 248 >UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli IAI39 RepID=B7NQU2_ECO7I Length = 277 Score = 126 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 48/75 (64%) Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145 +GKF M+ WQP DF+R ++L G+ L T +ELA F YW AEGK +H QW+QKLA Sbjct: 181 LGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELAEFRIYWMAEGKAYHQAQWEQKLA 240 Query: 146 RSLQIGRASNGGLPK 160 R +Q R +G + K Sbjct: 241 RRIQFCRQKSGEVRK 255 >UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTN9_SODGM Length = 328 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 42/104 (40%), Positives = 54/104 (51%) Query: 59 KLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTT 118 LA A + L P + P+ KF M+ DW D +F R AA WG+ L EP T Sbjct: 161 SLASGHDPSANNAVLDNRPPSPGWFGPIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTA 220 Query: 119 EELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD 162 ELA FI +W+AEGK HH QW+Q L +S++ R G K Sbjct: 221 TELAEFITFWKAEGKAKHHAQWEQALTKSIRRSREFTGKRGKDG 264 >UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR Length = 91 Score = 120 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 91 MYPDWQPDADFIRLAALWGVALR-EPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M+ +WQP DF+ A WG AL + +L FI YW AEG V HVQW+QK AR L Sbjct: 1 MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60 Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178 + G KR ++ E P P G++ Sbjct: 61 NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88 >UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XEX0_9ENTR Length = 317 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 38/181 (20%) Query: 20 HQTVLAKAEGGVVAVFANNAPAFYAV-------------TPARLAELLALEEKLARPGSD 66 + + G +++F+ Y + TP+++ EL L E Sbjct: 71 PVLLQELSSCGYISLFSAQDGKRYGLINNFTKHQVVNKKTPSKIKELNLLPENYGSDTGG 130 Query: 67 VAL---------------DDQLYQEPQA----APVAVPMG------KFAMYPDWQPDADF 101 + L +D +P A VP G KF MY W+P DF Sbjct: 131 LPLGKEGKGNIKPLSNTREDNFQSDPNANNSILNGRVPAGGFGVNDKFVMYHGWEPGQDF 190 Query: 102 IRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKR 161 + AA WG L+EP+ ELA FI YW AEGK H QW+ LA+ L+ R N + K Sbjct: 191 TQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKGLKHSRLKNEKVVKN 250 Query: 162 D 162 Sbjct: 251 G 251 >UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SJ92_AERS4 Length = 232 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 43 YAVTPARLAELLA--LEEKLARPGSDVALDDQLYQEPQAAPVA-------VPMGKFAMYP 93 + V +L EL +E L + + + +Q P P+ +P F M+ Sbjct: 60 FQVNARQLTELFDELMEAGLLQVEAQAD-SEHYHQCPFQLPLLTQKVRSPLPERPFQMHL 118 Query: 94 DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQIGR 152 W+PD + LA L GV + E+L FIAYW +VF QW K R+L+ R Sbjct: 119 QWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGRPEVFDSQHQWMLKFIRALKTRR 177 >UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B4RS94_ALTMD Length = 222 Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%) Query: 57 EEKLARPGSDVALDDQLYQEPQAAPV-AVPMGKF--------AMYPDWQPDAD-FIRLAA 106 + L + L+ + + P+ + F AM W P+ F +A+ Sbjct: 76 QVGLVALPLALDLEHTINGKTLLLPLLSEAQSDFDQLHARHSAMTATWAPNKALFEEMAS 135 Query: 107 LWGVALREPVTTEELASFIAYWQAEG-KVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165 L G+ + + E+ FIAYW VF QW QK A +++ R ++G P + V T Sbjct: 136 LLGI-IDKTYDDNEVGEFIAYWLGRPSSVFSEFQWTQKFANNIKRKRLASGYAPTKVVGT 194 >UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0EB69 Length = 220 Score = 65.6 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 12/129 (9%) Query: 28 EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV-AVPM 86 + + ++ F +E L L + + P+ + Sbjct: 46 NKAIGELLSDPHTRFTQGRQINNVISELVEAGLVAINPKTDLSRSIQDQRLVLPLLNIKD 105 Query: 87 GKF--------AMYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYWQAEGK-VFH 136 KF +M+ W PD + LAA+ G+ L E++ FI YW + F Sbjct: 106 DKFEALHNNTISMHLKWLPDQLLYKELAAMVGL-LATDYDLEDVGEFITYWMGRPQSRFT 164 Query: 137 HVQWQQKLA 145 QW QK Sbjct: 165 PFQWTQKFV 173 >UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15MT1_PSEA6 Length = 224 Score = 59.0 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 55 ALEEKLARPGSDVALDDQLYQEPQAAPVA-VPMGKFA--------MYPDWQPDADFIR-L 104 L +L +V L+ + P+ + ++ M +W P+A + L Sbjct: 72 LLHVELVSFVEEVDLNKSFNGKILTLPLLMIKPDDYSQLHLQWQKMSANWTPNATLYQDL 131 Query: 105 AALWGVALREPVTTEELASFIAYWQAEGKV-FHHVQWQQKLARSLQIGR 152 A L G+ + + EL F+AYW + F QW QK +++ R Sbjct: 132 AKLVGI-IDSDFSDHELGDFVAYWLGRPQTQFTQFQWTQKFVFNVKQKR 179 >UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V3X8_PSEA7 Length = 320 Score = 51.3 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 62 RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRE------P 115 + G+ D P+ AP P +F M+ W P A W L Sbjct: 150 KVGTPPVSDIPPTTPPREAP--QPGQRFPMHDAWLPS------ARGWPATLTRNGMKNYQ 201 Query: 116 VTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQI 150 + E+L F +YW + + QW+ +LA++L Sbjct: 202 LRDEDLLEFRSYWINRPEKYQSQGQWEHELAQNLLR 237 >UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD4_PSEPG Length = 303 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 88 KFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG-KVFHHVQWQQKLAR 146 +FAM DWQP + L ++ V ++ F ++W A +W+ LA Sbjct: 160 RFAMTADWQPSQKTFQAVLLQMGITQQAVDQDQFLEFRSFWLASPDDHRTQAKWEHALAS 219 Query: 147 SLQI--GRASNGG----LPKRDVNTVSEPDSQ 172 L+ +A GG + + +P Q Sbjct: 220 HLKRNLRQAQAGGNTHANSRTGAGSAQQPGQQ 251 >UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BGB5_9GAMM Length = 249 Score = 46.7 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 7/100 (7%) Query: 73 LYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG 132 ++ +A V K AM+ DW+P DF RL + EL F Y+ A Sbjct: 131 YLRQGKAQRTPVTARKTAMHSDWEPSEDFPRLLEF--HDIPLQFALSELGKFRQYYLATD 188 Query: 133 KVFHHVQWQQKLARSLQ---IGRASNGGLPKRDVNTVSEP 169 + + W + +Q + G R T EP Sbjct: 189 R--KEISWDVRYLNWVQRAWHDSMNTKGRHDRQQATDGEP 226 >UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21NR3_SACD2 Length = 384 Score = 45.9 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 70 DDQLYQEPQAAPVAVPMGKFAMYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYW 128 +E Q ++ GK + +W+P D +LA + E E+L +FI YW Sbjct: 122 PTIRAEEAQVDEISQSFGKNFLGANWRPSRDTLTQLAQ---HNIPEHFALEQLPNFITYW 178 Query: 129 QAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQ 172 + + H W K + + R ++D Q Sbjct: 179 RERREA--HRSWGAKFVQHVIFKWRDFESKRNQKDQAIAMHAAWQ 221 Score = 42.1 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 AM+ WQP D + + + F+ YWQ G V W K + ++ Sbjct: 215 AMHAAWQPSLD-AMDVLTVHAGISRGFVEDAIPEFVLYWQERGDVLK--TWNSKFIQHVR 271 Query: 150 IGRASNGGLPKRDVNTVSEPDSQIP 174 + + + P++ P Sbjct: 272 LQWKKYNSAVEHSTDPKPIPENWQP 296 >UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RW88_9GAMM Length = 376 Score = 45.6 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 95 WQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI--GR 152 W P D ++L AL + ++L FI YW+ G+ W+ K + + R Sbjct: 132 WSPSEDLLQLMAL-NHNIPRQFALDQLEDFIFYWRERGE--TSHAWENKFRQHVTNNWRR 188 Query: 153 ASNGGLPK 160 G + Sbjct: 189 KQQTGESE 196 >UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDS0_CELJU Length = 367 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 68 ALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127 Q + +P+A P P G + P WQPD + ++ A + E ++L FI Y Sbjct: 78 DNPTQPHVQPEA-PQIHP-GANLISPHWQPDTELLKRIAE--HNIPEYFIRQQLPEFITY 133 Query: 128 WQAEGKVFHHVQWQQKLARSLQI 150 W+ G++ H W K + + Sbjct: 134 WRERGEISH--AWGAKFLKDVLH 154 Score = 40.9 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 90 AMYPDWQPDADFIR-LAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSL 148 AM+ W+P D + L G++L + + F+ YWQ G V W K + + Sbjct: 190 AMHSHWRPSRDALEVLVKHAGISLA--FVEDAIPEFVVYWQERGDVGR--TWNSKFIQHV 245 Query: 149 QIGRASNGGLPKRDVNTVSEPDSQIP 174 + + D P+ P Sbjct: 246 KRQWLRYNTALEHDSEPRRLPEHWQP 271 >UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0T9_9GAMM Length = 386 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M DWQP + AL + + L F +W G + W K + ++ Sbjct: 283 PMTGDWQPSEQVFEVLAL--SNIDRSYAMDRLGEFRVFWCDSGDL--QTSWNSKFLQHVK 338 Query: 150 IG-RASNGGLPKRDVNT 165 R G + K+ + Sbjct: 339 HQWRWEQGQISKKGSDH 355 >UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BTM7_TERTT Length = 444 Score = 43.2 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 93 PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI 150 P WQP D LA L + E +++ FI YW+ G+ W K + + Sbjct: 133 PQWQP--DHHTLAQLAQHNIPENFARQQVPEFITYWRERGEA--QRSWGAKFLQHVIR 186 Score = 40.9 bits (94), Expect = 0.018, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%) Query: 91 MYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M+ +W+P D L GV R + + F+ YW+ G H W K + ++ Sbjct: 278 MHDNWRPSPDAMEMLTVHSGV--RSEFCEDAIPEFVFYWKDVGDA--HKNWNAKFVQHVR 333 Query: 150 IGRASNGGLPKRDVNTVSEPDSQIP 174 + + + P P Sbjct: 334 LQWKKFQSALEHSTDPKPIPVDWQP 358 >UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YQT9_9GAMM Length = 398 Score = 42.9 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 69 LDDQLYQEPQAAPVA-VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127 + A P +P M WQP D +R + GV + +++ F+ Y Sbjct: 130 QPAYNHSATTATPSNGIPTSAKTMGNSWQPSQDAMRQLSQLGVT--QLFAQQQIPQFVTY 187 Query: 128 WQAEGKVFHHVQWQQKLARSL-QIGRASNGGLPKRDVNTVSEPDS 171 W+ W+ K + + + + + +R + Sbjct: 188 WRERN--VPRHSWESKFIKEVWRQWQQAEASSHRRRQEVALTNEW 230 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea... 235 6e-61 UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola... 195 8e-49 UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter... 168 8e-41 UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co... 156 4e-37 UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon... 147 2e-34 UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R... 142 4e-33 UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C... 141 7e-33 UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob... 139 5e-32 UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri... 136 3e-31 UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu... 129 4e-29 UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis... 126 4e-28 UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=... 121 9e-27 UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon... 116 3e-25 UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacter... 113 3e-24 UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E... 113 4e-24 UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni... 107 2e-22 UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B... 104 2e-21 UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoa... 103 3e-21 UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reineke... 91 1e-17 UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Sacchar... 88 1e-16 UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudom... 85 9e-16 UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6... 81 1e-14 UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine ... 79 6e-14 UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvib... 75 8e-13 UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine ... 72 7e-12 Sequences not found previously or not previously below threshold: UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredin... 65 9e-10 UniRef50_B8KWA0 Putative uncharacterized protein n=1 Tax=gamma p... 58 1e-07 UniRef50_Q1MZF8 Putative uncharacterized protein n=1 Tax=Bermane... 56 7e-07 UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma p... 53 3e-06 UniRef50_Q2BPP0 Putative uncharacterized protein n=1 Tax=Neptuni... 53 3e-06 UniRef50_A0Y8X7 Putative uncharacterized protein n=1 Tax=marine ... 53 4e-06 UniRef50_B8KNN9 Putative uncharacterized protein n=1 Tax=gamma p... 53 4e-06 UniRef50_A5W5W0 Putative uncharacterized protein n=1 Tax=Pseudom... 44 0.002 UniRef50_Q2G3Y1 Putative uncharacterized protein n=1 Tax=Novosph... 41 0.019 >UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS Length = 179 Score = 235 bits (599), Expect = 6e-61, Method: Composition-based stats. Identities = 146/179 (81%), Positives = 164/179 (91%) Query: 1 MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60 MSSR+LT DV+GID L+HDH VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL Sbjct: 1 MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60 Query: 61 ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120 +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE Sbjct: 61 SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120 Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179 LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179 >UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5 Length = 164 Score = 195 bits (494), Expect = 8e-49, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%) Query: 4 RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63 ++L D + ++ + +L K+ G++ V N +P FY +TP L ++ LE L Sbjct: 2 KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58 Query: 64 GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123 + LD Q + KF+M+P W PD DFIR AALWG+ L E + ELAS Sbjct: 59 ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106 Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179 FI+YWQAEG FHH+QWQQKLARSLQ R+ S KRD+ + PD +P GFRG Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163 >UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica RepID=B5R8P0_SALG2 Length = 332 Score = 168 bits (425), Expect = 8e-41, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 28 EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVP 85 GV +VF A L EL AR + V+ + Q P + P Sbjct: 123 STGVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEP 182 Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKL 144 +GKF+M DW P DF + AA WGVAL EP EL +F YW +EGKVF +QW+QK Sbjct: 183 IGKFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKF 242 Query: 145 ARSLQIGRASNGGLPKRDVNTVSEPDSQ 172 AR + RA + + + +PDS Sbjct: 243 ARHVNHVRAKAKPASRGESHAEIQPDST 270 >UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli RepID=B1LPY0_ECOSM Length = 346 Score = 156 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 35 FANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA----PVAVPMGKFA 90 F + P + P +L AR + + + L + ++ P+GKF Sbjct: 145 FPSKTPKNGSRNPKEPKDLNPTHN--ARESAPTSEQEVLSLQAAPLVFLDGLSEPIGKFP 202 Query: 91 MYPDWQPDADFIRLAALWGVALRE-PVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M W P DF R AALWG+AL E T ELA+F YW AEGKVF +QW+QK AR + Sbjct: 203 MTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAAEGKVFTQIQWEQKFARHVN 262 Query: 150 IGRASNGGLPKRDVNTVSEPDSQ 172 RA + K VN + P Sbjct: 263 HVRAQVKPVSK-GVNHAAAPGGT 284 >UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC81_TOLAT Length = 225 Score = 147 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 17/173 (9%) Query: 18 HDHQTVLAKAEGGVVAVFANNAPA--FYAVTPARLAELLA--LEEKLARPGSDVALDDQL 73 H + G +AV P Y VT +L +L ++ L + + A D Sbjct: 33 HQPVPINYPELGRALAVEDPQVPGGFSYQVTARQLTQLFDELIQAGLIQLQAATASSDHY 92 Query: 74 YQEPQAAPVAVPM------GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127 +Q+ P+ + FAM+ +WQPD F L L G+ + EE FIAY Sbjct: 93 HQQYVTLPLLISQVAPLAQQAFAMHTEWQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAY 151 Query: 128 WQAEGKVF-HHVQWQQKLARSLQIGR-----ASNGGLPKRDVNTVSEPDSQIP 174 W + F QW K + L+ R N G + V T ++ S P Sbjct: 152 WLGRPERFSTQHQWMMKFVKMLKSRRYQRRQTENIGYQQTTVATAAQNISTEP 204 >UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38 Length = 310 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 36 ANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA-PVAVPMGKFAMYPD 94 A++A R +L + A ++ P+ V P+GKF M + Sbjct: 110 ASDADKKRTREEKRREDLNPSLKGGADEKNEGDEKPVEPSAPRYLEGVNEPIGKFTMTSN 169 Query: 95 WQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153 W P DF + AA WG+ L +P ELA F AYW +EGKVF +QW+QK AR + + R+ Sbjct: 170 WLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQWEQKFARHVVLVRS 229 Query: 154 SNGGLPKRDVNTVSEPDSQ 172 + N + S Sbjct: 230 KQKPEAGGNENAGVQSGST 248 >UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26 Length = 345 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 51 AELLALEEKLARPGSDV----ALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAA 106 EL R + Q + ++ P+GKF M WQP DF + AA Sbjct: 159 KELNPTHNARMRESATTGELNDASLQTAEPEYLDGLSEPIGKFPMTGVWQPSPDFRQRAA 218 Query: 107 LWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165 +WG+AL EP T ELA+F YW AEGKVF VQW+QK AR +Q RA + K + Sbjct: 219 VWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVQHVRAQVKPVSKGVSHA 278 Query: 166 VS 167 Sbjct: 279 AP 280 >UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XEX0_9ENTR Length = 317 Score = 139 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 38/183 (20%) Query: 20 HQTVLAKAEGGVVAVFANNAPAFYAV-------------TPARLAELLALEEKLARPGSD 66 + + G +++F+ Y + TP+++ EL L E Sbjct: 71 PVLLQELSSCGYISLFSAQDGKRYGLINNFTKHQVVNKKTPSKIKELNLLPENYGSDTGG 130 Query: 67 VAL---------------DDQLYQEPQA----APVAVPMG------KFAMYPDWQPDADF 101 + L +D +P A VP G KF MY W+P DF Sbjct: 131 LPLGKEGKGNIKPLSNTREDNFQSDPNANNSILNGRVPAGGFGVNDKFVMYHGWEPGQDF 190 Query: 102 IRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKR 161 + AA WG L+EP+ ELA FI YW AEGK H QW+ LA+ L+ R N + K Sbjct: 191 TQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKGLKHSRLKNEKVVKN 250 Query: 162 DVN 164 Sbjct: 251 GTG 253 >UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1 RepID=A1AE33_ECOK1 Length = 282 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 57 EEKLARPGSDVAL----DDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVAL 112 R G+ + Q+ + ++ P+GKF M W P DF R AALWG AL Sbjct: 149 HIAHVREGAPTSEANSTPLQVAEPEFLDGLSEPIGKFPMTDGWLPSPDFRRRAALWGTAL 208 Query: 113 REP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171 EP T ELA+F YW AEGKVF VQW+QK AR + R + K D + D Sbjct: 209 PEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVNHIRGKSKNAGKSDELDWNNTDW 268 Query: 172 QI 173 Sbjct: 269 IE 270 >UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XSL9_KLEP3 Length = 327 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Query: 68 ALDDQLYQEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFI 125 A + Q+P+ P V +P+GKF M+ W P D+ RLAA WG+AL EP ELA F Sbjct: 157 AQERNFPQQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFT 216 Query: 126 AYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD--VNTVSEPDSQ 172 AYW++EGKVF +QW+QK ARS+ RA + P + +P + Sbjct: 217 AYWKSEGKVFTQIQWEQKFARSVISARAKSKPQPATGGKSHAGIQPVNT 265 >UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTN9_SODGM Length = 328 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 4/146 (2%) Query: 21 QTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEK----LARPGSDVALDDQLYQE 76 + E +V A + + L LA A + L Sbjct: 119 MKLTTPEECNAESVTPAFQKALPEIEREEDIKDNPLSSARVRSLASGHDPSANNAVLDNR 178 Query: 77 PQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFH 136 P + P+ KF M+ DW D +F R AA WG+ L EP T ELA FI +W+AEGK H Sbjct: 179 PPSPGWFGPIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTATELAEFITFWKAEGKAKH 238 Query: 137 HVQWQQKLARSLQIGRASNGGLPKRD 162 H QW+Q L +S++ R G K Sbjct: 239 HAQWEQALTKSIRRSREFTGKRGKDG 264 >UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27 Length = 268 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 15/161 (9%) Query: 22 TVLAKAEGGVVAVFANNAPAFY----AVTPARLAELLALEEKLARPGSDVALDDQLYQEP 77 + G + N P +V + E ++ + ++ + Sbjct: 116 KLNDPKNGKL------NDPKNGMQNLSVNQSYNQEKERGDKTGGLVPPEPDANNAVINNF 169 Query: 78 QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137 GKF M+ W P DF+R+++L G+ L T +ELA F YW AEGK FHH Sbjct: 170 VPPGGLGQFGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHH 229 Query: 138 VQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFR 178 QW+QKLAR LQI R + P+ +V P P + Sbjct: 230 AQWEQKLARRLQISRQNKLTSPENNV-----PHWNSPEAWE 265 >UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SJ92_AERS4 Length = 232 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 14/142 (9%) Query: 23 VLAKAEGGVVAVFANNAPAFY--AVTPARLAELLA--LEEKLARPGSDVALDDQLYQEPQ 78 + G +AV + P+ + V +L EL +E L + + + +Q P Sbjct: 38 LNYPELGRSLAVVDPSDPSGFCFQVNARQLTELFDELMEAGLLQVEAQADSE-HYHQCPF 96 Query: 79 AAPV-------AVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAE 131 P+ +P F M+ W+PD + LA L GV + E+L FIAYW Sbjct: 97 QLPLLTQKVRSPLPERPFQMHLQWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGR 155 Query: 132 GKVF-HHVQWQQKLARSLQIGR 152 +VF QW K R+L+ R Sbjct: 156 PEVFDSQHQWMLKFIRALKTRR 177 >UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0EB69 Length = 220 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 12/146 (8%) Query: 28 EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV-AVPM 86 + + ++ F +E L L + + P+ + Sbjct: 46 NKAIGELLSDPHTRFTQGRQINNVISELVEAGLVAINPKTDLSRSIQDQRLVLPLLNIKD 105 Query: 87 GKF--------AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGK-VFHH 137 KF +M+ W PD + A L E++ FI YW + F Sbjct: 106 DKFEALHNNTISMHLKWLPDQLLYKELAAMVGLLATDYDLEDVGEFITYWMGRPQSRFTP 165 Query: 138 VQWQQKLARSLQIGRASNGGLPKRDV 163 QW QK LQ +A+ K Sbjct: 166 FQWTQKFV--LQRKQAAQRHNVKNTS 189 >UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli IAI39 RepID=B7NQU2_ECO7I Length = 277 Score = 113 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 62/169 (36%), Gaps = 26/169 (15%) Query: 24 LAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLAR--------------------- 62 G V N P + + L + + Sbjct: 101 NEPENGNVTE--NGNIPKNGMLNDPKNGMLNDPKNGIQNQSYNQSFNQERESRTKTGDSV 158 Query: 63 PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122 P A + + +GKF M+ WQP DF+R ++L G+ L T +ELA Sbjct: 159 PHDPGANNAVMNN-FVPPGGPGQLGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELA 217 Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171 F YW AEGK +H QW+QKLAR +Q R +G + K D Sbjct: 218 EFRIYWMAEGKAYHQAQWEQKLARRIQFCRQKSGEVRK--SLDWHNTDW 264 >UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR Length = 91 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 91 MYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M+ +WQP DF+ A WG AL +L FI YW AEG V HVQW+QK AR L Sbjct: 1 MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60 Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178 + G KR ++ E P P G++ Sbjct: 61 NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88 >UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B4RS94_ALTMD Length = 222 Score = 104 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 11/165 (6%) Query: 11 VGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALD 70 VG + + K ++ + + P L + + L + L+ Sbjct: 31 VGANTATTSSAPIDYKHLLNLLNGDSKDEPYQRGRQINSLVK-QLEQVGLVALPLALDLE 89 Query: 71 DQLYQEPQAAPV-AVPMGKF--------AMYPDWQPDADFIRLAALWGVALREPVTTEEL 121 + + P+ + F AM W P+ A + + E+ Sbjct: 90 HTINGKTLLLPLLSEAQSDFDQLHARHSAMTATWAPNKALFEEMASLLGIIDKTYDDNEV 149 Query: 122 ASFIAYWQAEG-KVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165 FIAYW VF QW QK A +++ R ++G P + V T Sbjct: 150 GEFIAYWLGRPSSVFSEFQWTQKFANNIKRKRLASGYAPTKVVGT 194 >UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15MT1_PSEA6 Length = 224 Score = 103 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 10/141 (7%) Query: 25 AKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVA- 83 A ++++ F L +L +V L+ + P+ Sbjct: 42 ALNYKSLLSMLNAKESKFNLGRQVNNLIKELLHVELVSFVEEVDLNKSFNGKILTLPLLM 101 Query: 84 VPMGKFA--------MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKV- 134 + ++ M +W P+A + A + + EL F+AYW + Sbjct: 102 IKPDDYSQLHLQWQKMSANWTPNATLYQDLAKLVGIIDSDFSDHELGDFVAYWLGRPQTQ 161 Query: 135 FHHVQWQQKLARSLQIGRASN 155 F QW QK +++ R + Sbjct: 162 FTQFQWTQKFVFNVKQKRLAK 182 >UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BGB5_9GAMM Length = 249 Score = 91.4 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 62 RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEEL 121 R + + ++ +A V K AM+ DW+P DF RL + EL Sbjct: 120 RQLNQSDDELAYLRQGKAQRTPVTARKTAMHSDWEPSEDFPRLLEF--HDIPLQFALSEL 177 Query: 122 ASFIAYWQAEGKVFHHVQWQQKLARSLQ---IGRASNGGLPKRDVNTVSEPD 170 F Y+ A + + W + +Q + G R T EP Sbjct: 178 GKFRQYYLATDR--KEISWDVRYLNWVQRAWHDSMNTKGRHDRQQATDGEPA 227 >UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21NR3_SACD2 Length = 384 Score = 88.0 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%) Query: 63 PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122 +E Q ++ GK + +W+P D + A + E E+L Sbjct: 115 VSMPQKGPTIRAEEAQVDEISQSFGKNFLGANWRPSRDTLTQLAQ--HNIPEHFALEQLP 172 Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQ 172 +FI YW+ + H W K + + R ++D Q Sbjct: 173 NFITYWRERREA--HRSWGAKFVQHVIFKWRDFESKRNQKDQAIAMHAAWQ 221 Score = 56.0 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 82 VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQ 141 V + +WQP D + L + L FI YW+ +V H W Sbjct: 281 VEHSTDPKPIPENWQPSNDVYDVLRL--ANIDLAFAQSVLPEFILYWRDSKQV--HTSWN 336 Query: 142 QKLARSLQI---GRASNGGLPKRDVNTVS 167 + + ++ R +NG Sbjct: 337 TRFLQHVKFHWAKRLANGTATNNGTQPAQ 365 Score = 55.2 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 10/97 (10%) Query: 83 AVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQ 142 AM+ WQP D + + + + + F+ YWQ G V W Sbjct: 208 NQKDQAIAMHAAWQPSLDAMDVL-TVHAGISRGFVEDAIPEFVLYWQERGDVLK--TWNS 264 Query: 143 KLARSLQIGRASNGGLPKRDVN-TVSEPDSQIPPGFR 178 K + + R + T +P IP ++ Sbjct: 265 KFIQHV---RLQWKKYNSAVEHSTDPKP---IPENWQ 295 >UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD4_PSEPG Length = 303 Score = 85.3 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 15/119 (12%) Query: 69 LDDQLYQEPQAAPVAVPMG--------KFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120 + + P +FAM DWQP + L ++ V ++ Sbjct: 133 NPTIIDTDTYTEETPPPAREDDFDSRVRFAMTADWQPSQKTFQAVLLQMGITQQAVDQDQ 192 Query: 121 LASFIAYWQAEG-KVFHHVQWQQKLARSLQI--GRASNGG----LPKRDVNTVSEPDSQ 172 F ++W A +W+ LA L+ +A GG + + +P Q Sbjct: 193 FLEFRSFWLASPDDHRTQAKWEHALASHLKRNLRQAQAGGNTHANSRTGAGSAQQPGQQ 251 >UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V3X8_PSEA7 Length = 320 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 15/117 (12%) Query: 62 RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRE------P 115 + G+ D P+ AP P +F M+ W P A W L Sbjct: 150 KVGTPPVSDIPPTTPPREAP--QPGQRFPMHDAWLPS------ARGWPATLTRNGMKNYQ 201 Query: 116 VTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171 + E+L F +YW + + QW+ +LA++L + + + Sbjct: 202 LRDEDLLEFRSYWINRPEKYQSQGQWEHELAQNLLRNQRFDQNRSSYGNQAGNAEGQ 258 >UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0T9_9GAMM Length = 386 Score = 79.1 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 5/89 (5%) Query: 78 QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137 A + M DWQP + AL + + L F +W G + Sbjct: 271 FQAGLGHSPEPRPMTGDWQPSEQVFEVLAL--SNIDRSYAMDRLGEFRVFWCDSGDL--Q 326 Query: 138 VQWQQKLARSLQIG-RASNGGLPKRDVNT 165 W K + ++ R G + K+ + Sbjct: 327 TSWNSKFLQHVKHQWRWEQGQISKKGSDH 355 >UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDS0_CELJU Length = 367 Score = 75.3 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 18/124 (14%) Query: 60 LARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTE 119 LA Q + +P+A P P G + P WQPD + ++ A + E + Sbjct: 70 LAFDNHLADNPTQPHVQPEA-PQIHP-GANLISPHWQPDTELLKRIAE--HNIPEYFIRQ 125 Query: 120 ELASFIAYWQAEGKVFHHVQWQQKLARSLQIG------------RASNGGLPKRDVNTVS 167 +L FI YW+ G++ H W K + + R + D Sbjct: 126 QLPEFITYWRERGEISH--AWGAKFLKDVLHKWRHHQTQIARETREQQERRQRDDEAVFL 183 Query: 168 EPDS 171 + D Sbjct: 184 QRDQ 187 Score = 52.5 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 5/114 (4%) Query: 62 RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIR-LAALWGVALREPVTTEE 120 + + + Q A + AM+ W+P D + L G++L + Sbjct: 162 QIARETREQQERRQRDDEAVFLQRDQETAMHSHWRPSRDALEVLVKHAGISL--AFVEDA 219 Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIP 174 + F+ YWQ G V W K + ++ + D P+ P Sbjct: 220 IPEFVVYWQERGDVG--RTWNSKFIQHVKRQWLRYNTALEHDSEPRRLPEHWQP 271 Score = 52.2 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 9/88 (10%) Query: 93 PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152 WQP D + L + ++L F+ +W+ ++ H W K + ++ Sbjct: 267 EHWQPSKDVYDVLKL--ANIDLNFAQQQLPEFVLFWRDSNQL--HSSWNTKFLQHVKFHW 322 Query: 153 AS----NGGLPKRDVNTVSEPDSQIPPG 176 A N + +P + P G Sbjct: 323 AKQHALNTDPSTQVNAHAGQPLAH-PSG 349 >UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RW88_9GAMM Length = 376 Score = 72.2 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 94 DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI--G 151 W P D ++L AL + ++L FI YW+ G+ W+ K + + Sbjct: 131 HWSPSEDLLQLMAL-NHNIPRQFALDQLEDFIFYWRERGE--TSHAWENKFRQHVTNNWR 187 Query: 152 RASNGGLPK 160 R G + Sbjct: 188 RKQQTGESE 196 Score = 57.6 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%) Query: 93 PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152 WQP D + + + L L FI YW+ + H W K + + Sbjct: 280 DHWQPSDDVYDILRMSHIDLD--FARSLLPEFIVYWKDSNQ--THTSWNSKFLQHAKYHW 335 Query: 153 ASNGGLPKRDVNTVSEPDSQI 173 A L + + + + S Sbjct: 336 AKRHQLQQTENSHGGQQGSHS 356 Score = 44.5 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 87 GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146 A+ W+P D + + G + + + FI YW+ G + K + Sbjct: 201 QPLALDNHWRPSMDAMEIMERGG--ISRDFIEQAVPEFILYWRERGAAPKEL--NSKFIQ 256 Query: 147 SLQ------IGRASNGGLPKRDVNTVSEPD 170 ++ + PKR V+ D Sbjct: 257 HIRIQWARYSSSLEHSTEPKRIVDHWQPSD 286 >UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BTM7_TERTT Length = 444 Score = 65.3 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 91 MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI 150 + P WQPD LA L + E +++ FI YW+ G+ W K + + Sbjct: 131 IGPQWQPDHHT--LAQLAQHNIPENFARQQVPEFITYWRERGEA--QRSWGAKFLQHVIR 186 Query: 151 G-RASNGGLPKRDVNTVSEPDS 171 R L ++ Sbjct: 187 QWRQYEAQLHRQQKANEMLASW 208 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 4/87 (4%) Query: 82 VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQ 141 + + DWQP D + L + + F+ YW+ ++ H W Sbjct: 343 LEHSTDPKPIPVDWQPSEDVYDVLRL--ANIDLRFAHGLIPEFVIYWRDSNQL--HTSWN 398 Query: 142 QKLARSLQIGRASNGGLPKRDVNTVSE 168 + + + A G T + Sbjct: 399 TRFLQHAKREWARQHGQASATNGTPQQ 425 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 91 MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M+ +W+P D + + +R + + F+ YW+ G H W K + ++ Sbjct: 278 MHDNWRPSPDAMEML-TVHSGVRSEFCEDAIPEFVFYWKDVGDA--HKNWNAKFVQHVR 333 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 5/109 (4%) Query: 69 LDDQLYQEPQAAPVAVPMGK-FAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127 L + Q Q K M W+P + I + ++ +A F+ + Sbjct: 181 LQHVIRQWRQYEAQLHRQQKANEMLASWRPSDETIETLET-NLGIKREFLEGIIAEFVVF 239 Query: 128 WQAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQIPP 175 W+ G+ + W K R ++D ++ + + P Sbjct: 240 WRERGEAAEN--WDSKFIAHATREWRRFCERQNQQDQGSLMHDNWRPSP 286 >UniRef50_B8KWA0 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KWA0_9GAMM Length = 359 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M WQPD + + + GV + F YW+ ++ H W K + ++ Sbjct: 260 PMPEQWQPDENVYDILRMAGV--DREFAVALVPEFALYWRDSNEL--HTSWNSKFLQHVK 315 Query: 150 IG-RASNGGLPKRDVNTVSEPDSQIPPGFR 178 R S + + + + Q PG R Sbjct: 316 HQWRWSQ---QRGNDHGGQQAHRQGGPGGR 342 Score = 39.8 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 4/82 (4%) Query: 94 DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153 DWQP AD + + + + A FI YW+ G V K ++ A Sbjct: 191 DWQPSADAMEIMS--RADIDPEFIDSLRAEFILYWRERGGPPKEV--NSKFIGYVRQRWA 246 Query: 154 SNGGLPKRDVNTVSEPDSQIPP 175 P+ P Sbjct: 247 RFSASLHHSTEPRPMPEQWQPD 268 >UniRef50_Q1MZF8 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZF8_9GAMM Length = 365 Score = 55.6 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 7/89 (7%) Query: 78 QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137 +A +A P M W+P + + L + + F+ YW+ ++ H Sbjct: 259 FSASLAHPSDPVPMQDGWEPAVEVYEI--LEMANIDRQFAQSLIKEFVLYWRDSNQL--H 314 Query: 138 VQWQQKLARSLQI---GRASNGGLPKRDV 163 W K + + R + G Sbjct: 315 TSWNSKFLQHAKHIWSKRLNGQGNSATSQ 343 Score = 45.6 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 5/105 (4%) Query: 63 PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122 + ++ K A++PDW+PD + ++ + + + +L Sbjct: 95 EKAPSDSKRSRNEQAFEQAKQQ--YKQAIHPDWRPDTETLKYIE-QTLGIPKRYAQSQLQ 151 Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVS 167 F+ ++Q++G + W R + + P Sbjct: 152 DFVFHYQSQGTLAT--SWSTMFIRWVNKRFKEDQAHPAVFQGDAQ 194 Score = 42.1 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 87 GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146 K AM+ WQP A + + GV + ++ F+ +W +G+ H W K Sbjct: 195 RKQAMWDSWQPQAATLDILQKAGV--EPSFIQDCVSEFVLFWMEKGEA--HDTWNTKFVA 250 Query: 147 SLQIG 151 ++ Sbjct: 251 WVRRQ 255 >UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YQT9_9GAMM Length = 398 Score = 53.3 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 84 VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQK 143 +P M WQP D +R + GV + +++ F+ YW+ H W+ K Sbjct: 146 IPTSAKTMGNSWQPSQDAMRQLSQLGVT--QLFAQQQIPQFVTYWRERNVPRH--SWESK 201 Query: 144 LARSLQIG-RASNGGLPKRDVNTVSEPDS 171 + + + + +R + Sbjct: 202 FIKEVWRQWQQAEASSHRRRQEVALTNEW 230 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 A+ +W+P D +++ G + + + FI YW+ G + W K + ++ Sbjct: 225 ALTNEWRPSRDALQILIGQGG-INSNFIEDSIPEFILYWRDRGDLSS--TWDSKFIQHIR 281 Query: 150 IG-RASNGGLPKRDVNTVSEPDSQ 172 + +G + + + E Q Sbjct: 282 RQWQFFSGMMEQDSMPRKIEAQWQ 305 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 93 PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152 WQP A + L + + + FI YWQ G W K + ++ Sbjct: 302 AQWQPRASVYDV--LQMANINRQFAEQLVPEFILYWQENG--MPQSSWSTKFLQFVKRQW 357 Query: 153 ASNGGLPKRDVNTVSEPDSQIPPG 176 A + D + S P G Sbjct: 358 ARHIQPSSTDTAHGKQQGSN-PNG 380 >UniRef50_Q2BPP0 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPP0_9GAMM Length = 324 Score = 53.3 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 M WQP A+F A L + L F+ YW + + W QK ++ Sbjct: 217 PMELGWQPSANFY--ALLPRHNISPQFAQTCLDEFVLYWLDKDR--KETNWDQKFLGWVK 272 Query: 150 I---GRASNGGLPKRDVNTVSEPDSQIPP 175 + + G +R N + P Sbjct: 273 REWVKKQTQEGRQQRLSNEQQAGFNHENP 301 >UniRef50_A0Y8X7 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8X7_9GAMM Length = 384 Score = 53.3 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 16/152 (10%) Query: 26 KAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVP 85 + GV+ + + ++ A + + E L R S +Q + + Sbjct: 75 LKDKGVILIESPPLQQGERLSFAMNETVNSTEA-LERASSTTRTKEQAVGQRSS------ 127 Query: 86 MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145 G + +W P D ++L L + ++ F+ YWQ +V H W K Sbjct: 128 -GANLLAKNWHPPDDLLQLLEL-NHNISRDFALQQREDFLIYWQDRQQVSH--SWPSKFR 183 Query: 146 RSLQ-----IGRASNGGLPKRDVNTVSEPDSQ 172 + + ++ + Sbjct: 184 QHVLKQWRFHQSRVAEVETRQVQSNALNSSWH 215 Score = 49.1 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 7/76 (9%) Query: 93 PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152 +WQP D + L + +A F+ +W+ ++ W K + + Sbjct: 285 ANWQPSEDVYDILRL--ANIDIAFARGLVAEFVLFWRDTQQI--QRSWNTKFLQHAKY-- 338 Query: 153 ASNGGLPKRDVNTVSE 168 + + + Sbjct: 339 -QWATRHQMGQHYAGQ 353 Score = 47.2 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Query: 73 LYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG 132 +Q A + A+ W P D + + L + T+ + F+ YW+ G Sbjct: 192 FHQSRVAEVETRQVQSNALNSSWHPSQDALDI--LHRADVNPDFITDAIPEFVLYWRERG 249 Query: 133 KVFHHVQWQQKLARSLQIG 151 + H W K ++ Sbjct: 250 EA--HSTWNSKFIAHIRRQ 266 >UniRef50_B8KNN9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNN9_9GAMM Length = 256 Score = 52.9 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%) Query: 90 AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149 + PD+QP D + L + + +++ F YW+ G H WQ + + +Q Sbjct: 157 PLPPDFQPSEDMLELLERF-HGVPRGFALQQIEDFTLYWRERGSAGH--AWQNRFKQHVQ 213 Query: 150 IGRASNGGLPKRDVNTVSE 168 + + V+ + Sbjct: 214 F-QWARQQQEATGVDHAGQ 231 >UniRef50_A5W5W0 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1 RepID=A5W5W0_PSEP1 Length = 258 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%) Query: 70 DDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQ 129 ++ Q P M +W+PD ++ A + T E A+F+ ++ Sbjct: 144 EEHNTQRAGEESGVDPKLPTEMDLEWKPDDKLLKAYAKRMGIPVDLFTDEATAAFVCHYS 203 Query: 130 AEGKVFHHVQWQQKLARSLQIGRASNGGL 158 A G+ W L + ++ A+ + Sbjct: 204 ASGRCETQASWVSLLVKWVKRDMATASNV 232 >UniRef50_Q2G3Y1 Putative uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y1_NOVAD Length = 247 Score = 41.0 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 41/168 (24%), Gaps = 19/168 (11%) Query: 23 VLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV 82 V GV+ + RLA + + ++ + + Q+ P Sbjct: 59 VAELEASGVIVDTGERIGRTKQIKVYRLAMETVPKTEQSQKRNSTENAPKQSQKRDTEPS 118 Query: 83 AVP----------------MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIA 126 P F M DW P + AL + E+ F Sbjct: 119 KEPSCSTEPKGSSEHKAREAKPFRMMADWSPSPLPSNVQALVDLWPPGRF-EREIDQFRD 177 Query: 127 YWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIP 174 YW W + ++ + D ++ P Sbjct: 178 YWLDRTDRRP--GWDRTFHNRIRDIHDRVMRETRNDRPASNDQGITNP 223 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.303 0.119 0.316 Lambda K H 0.267 0.0357 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 861,134,326 Number of Sequences: 3077464 Number of extensions: 27967395 Number of successful extensions: 80250 Number of sequences better than 1.0e-01: 36 Number of HSP's better than 0.1 without gapping: 55 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 80063 Number of HSP's gapped (non-prelim): 116 length of query: 179 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 59 effective length of database: 671,100,676 effective search space: 39594939884 effective search space used: 39594939884 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.7 bits)