Phyre 2 alignment of P0A8J2 with d1ryqa_

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Job Description | P0A8J2
Confidence | 3.94% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 38 | Aligned Residues | 16
% Identity | 31% | Template | d1ryqa_
SCOP info | Rubredoxin-like | RNA polymerase subunits | RpoE2-like
Resolution | 1.38

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query Sequence |  | G | V | V | A | V | F | A | N | N | . | . | . | . | . | . | . | . | . | . | . | A | P | A | F | Y | A | V
Query Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | L | V | I | I | V | D | V | E | N | S | E | I | A | K | K | I | G | A | K | V | P | G | K | Y | A | I
Template Known Secondary structure |  |  |  |  |  |  | S |  | G | G | G |  |  |  |  |  |  |  | T |  |  | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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