Phyre 2 alignment of P0A8J2 with c3nsjA_

Return to main results | Retrieve Phyre Job Id

Job Description | P0A8J2
Confidence | 4.27% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 31 | Aligned Residues | 37
% Identity | 19% | Template | c3nsjA_
PDB info | PDB header:immune system | Chain: A: PDB Molecule:perforin-1; | PDBTitle: the x-ray crystal structure of lymphocyte perforin
Resolution | 2.75 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |  |  |  | . | 120 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | F | A | M | Y | P | D | W | Q | P | D | A | D | F | I | R | L | A | A | L | W | G | V | A | L | R | E | P | V | T | T | . | . | . | E | E | L | A | S | F | I | A | Y | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | F | R | L | V | Q | K | P | P | L | H | L | D | F | K | K | A | L | R | A | . | . | . | . | L | P | R | N | F | N | S | S | T | E | H | A | Y | H | E | L | I | S | S | Y
Template Known Secondary structure |  |  |  |  |  |  | S | S |  |  | B |  |  |  |  |  |  |  |  |  | T | . | . | . | . | S |  | S | S |  |  | S | S | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . |  |  |  |  | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions