Phyre 2 alignment of P0A8J2 with c2exuA_

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Job Description | P0A8J2
Confidence | 4.09% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 36 | Aligned Residues | 17
% Identity | 24% | Template | c2exuA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; | PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
Resolution | 2.23 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
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Query Sequence |  | G | V | V | A | V | F | A | N | N | . | . | . | . | . | . | . | . | . | . | . | . | . | A | P | A | F | Y | A | V | T
Query Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
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Template Sequence |  | G | L | V | G | M | C | K | P | T | K | S | W | V | A | K | W | L | S | V | D | H | S | I | A | G | M | Y | A | I | K
Template Known Secondary structure |  |  |  |  |  |  | S |  | T | T | T |  |  |  |  |  |  | T | T |  | T | T | S |  | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 48 | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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