BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (179 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea...   315   5e-85
UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola...   152   4e-36
UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=...    86   7e-16
UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu...    86   8e-16
UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis...    84   3e-15
UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E...    82   1e-14
UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C...    79   5e-14
UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri...    79   6e-14
UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter...    79   7e-14
UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co...    78   1e-13
UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob...    76   4e-13
UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R...    74   2e-12
UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni...    62   7e-09
UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon...    45   0.001
UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon...    44   0.002
UniRef50_A1AAW4 Putative uncharacterized protein n=8 Tax=Enterob...    43   0.006
UniRef50_Q0T563 Putative bacteriophage protein n=2 Tax=Shigella ...    40   0.024
UniRef50_D0KEP7 Prevent-host-death family protein n=18 Tax=Bacte...    40   0.035
UniRef50_P76065 Uncharacterized protein ydaU n=9 Tax=Enterobacte...    40   0.047

>UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS
          Length = 179

 Score =  315 bits (806), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 164/179 (91%)

Query: 1   MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60
           MSSR+LT DV+GID L+HDH  VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL
Sbjct: 1   MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60

Query: 61  ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120
           +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE
Sbjct: 61  SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120

Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179
           LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG
Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179


>UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5
          Length = 164

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%)

Query: 4   RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63
           ++L  D + ++    +   +L K+  G++ V  N +P FY +TP  L ++  LE  L   
Sbjct: 2   KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58

Query: 64  GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123
              + LD    Q  +         KF+M+P W PD DFIR AALWG+ L E +   ELAS
Sbjct: 59  ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106

Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179
           FI+YWQAEG  FHH+QWQQKLARSLQ  R+ S     KRD+  +  PD  +P GFRG
Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163


>UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27
          Length = 268

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 54/86 (62%)

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145
            GKF M+  W P  DF+R+++L G+ L    T +ELA F  YW AEGK FHH QW+QKLA
Sbjct: 178 FGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHHAQWEQKLA 237

Query: 146 RSLQIGRASNGGLPKRDVNTVSEPDS 171
           R LQI R +    P+ +V   + P++
Sbjct: 238 RRLQISRQNKLTSPENNVPHWNSPEA 263


>UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342
           RepID=B5XSL9_KLEP3
          Length = 327

 Score = 85.5 bits (210), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 75  QEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTT-EELASFIAYWQAEG 132
           Q+P+  P V +P+GKF M+  W P  D+ RLAA WG+AL EP     ELA F AYW++EG
Sbjct: 164 QQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFTAYWKSEG 223

Query: 133 KVFHHVQWQQKLARSLQIGRASN 155
           KVF  +QW+QK ARS+   RA +
Sbjct: 224 KVFTQIQWEQKFARSVISARAKS 246


>UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NTN9_SODGM
          Length = 328

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 46/72 (63%)

Query: 85  PMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKL 144
           P+ KF M+ DW  D +F R AA WG+ L EP T  ELA FI +W+AEGK  HH QW+Q L
Sbjct: 187 PIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTATELAEFITFWKAEGKAKHHAQWEQAL 246

Query: 145 ARSLQIGRASNG 156
            +S++  R   G
Sbjct: 247 TKSIRRSREFTG 258


>UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli
           IAI39 RepID=B7NQU2_ECO7I
          Length = 277

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%)

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145
           +GKF M+  WQP  DF+R ++L G+ L    T +ELA F  YW AEGK +H  QW+QKLA
Sbjct: 181 LGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELAEFRIYWMAEGKAYHQAQWEQKLA 240

Query: 146 RSLQIGRASNGGLPK 160
           R +Q  R  +G + K
Sbjct: 241 RRIQFCRQKSGEVRK 255


>UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26
          Length = 345

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 82  VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140
           ++ P+GKF M   WQP  DF + AA+WG+AL EP  T  ELA+F  YW AEGKVF  VQW
Sbjct: 194 LSEPIGKFPMTGVWQPSPDFRQRAAVWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQW 253

Query: 141 QQKLARSLQIGRA 153
           +QK AR +Q  RA
Sbjct: 254 EQKFARHVQHVRA 266


>UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1
           RepID=A1AE33_ECOK1
          Length = 282

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 82  VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140
           ++ P+GKF M   W P  DF R AALWG AL EP  T  ELA+F  YW AEGKVF  VQW
Sbjct: 178 LSEPIGKFPMTDGWLPSPDFRRRAALWGTALPEPEFTPAELAAFRDYWMAEGKVFTQVQW 237

Query: 141 QQKLARSLQ--IGRASNGG 157
           +QK AR +    G++ N G
Sbjct: 238 EQKFARHVNHIRGKSKNAG 256


>UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica
           RepID=B5R8P0_SALG2
          Length = 332

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 30  GVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVPMG 87
           GV +VF   A          L EL       AR  + V+    + Q     P  +  P+G
Sbjct: 125 GVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEPIG 184

Query: 88  KFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146
           KF+M  DW P  DF + AA WGVAL EP     EL +F  YW +EGKVF  +QW+QK AR
Sbjct: 185 KFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKFAR 244

Query: 147 SLQIGRASNGGLPKRDVNTVSEPDS 171
            +   RA      + + +   +PDS
Sbjct: 245 HVNHVRAKAKPASRGESHAEIQPDS 269


>UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli
           RepID=B1LPY0_ECOSM
          Length = 346

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 78  QAAPV------AVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQA 130
           QAAP+      + P+GKF M   W P  DF R AALWG+AL E   T  ELA+F  YW A
Sbjct: 184 QAAPLVFLDGLSEPIGKFPMTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAA 243

Query: 131 EGKVFHHVQWQQKLARSLQIGRA 153
           EGKVF  +QW+QK AR +   RA
Sbjct: 244 EGKVFTQIQWEQKFARHVNHVRA 266


>UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
           RepID=B6XEX0_9ENTR
          Length = 317

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 41/68 (60%)

Query: 88  KFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARS 147
           KF MY  W+P  DF + AA WG  L+EP+   ELA FI YW AEGK   H QW+  LA+ 
Sbjct: 177 KFVMYHGWEPGQDFTQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKG 236

Query: 148 LQIGRASN 155
           L+  R  N
Sbjct: 237 LKHSRLKN 244


>UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38
          Length = 310

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 82  VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQW 140
           V  P+GKF M  +W P  DF + AA WG+ L +P     ELA F AYW +EGKVF  +QW
Sbjct: 157 VNEPIGKFTMTSNWLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQW 216

Query: 141 QQKLARSLQIGRA 153
           +QK AR + + R+
Sbjct: 217 EQKFARHVVLVRS 229


>UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR
          Length = 91

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 91  MYPDWQPDADFIRLAALWGVAL-REPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M+ +WQP  DF+  A  WG AL  +     +L  FI YW AEG V  HVQW+QK AR L 
Sbjct: 1   MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60

Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178
             +    G  KR  ++  E P    P G++
Sbjct: 61  NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88


>UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LC81_TOLAT
          Length = 225

 Score = 45.1 bits (105), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 43  YAVTPARLAELL--ALEEKLARPGSDVALDDQLYQEPQAAPVAV----PMGK--FAMYPD 94
           Y VT  +L +L    ++  L +  +  A  D  +Q+    P+ +    P+ +  FAM+ +
Sbjct: 60  YQVTARQLTQLFDELIQAGLIQLQAATASSDHYHQQYVTLPLLISQVAPLAQQAFAMHTE 119

Query: 95  WQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFH-HVQWQQKLARSLQIGR- 152
           WQPD  F  L  L G+ +      EE   FIAYW    + F    QW  K  + L+  R 
Sbjct: 120 WQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAYWLGRPERFSTQHQWMMKFVKMLKSRRY 178

Query: 153 ----ASNGGLPKRDVNTVSEPDSQIP 174
                 N G  +  V T ++  S  P
Sbjct: 179 QRRQTENIGYQQTTVATAAQNISTEP 204


>UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas
           RepID=A4SJ92_AERS4
          Length = 232

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 84  VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVF-HHVQWQQ 142
           +P   F M+  W+PD +   LA L GV +      E+L  FIAYW    +VF    QW  
Sbjct: 109 LPERPFQMHLQWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGRPEVFDSQHQWML 167

Query: 143 KLARSLQIGR 152
           K  R+L+  R
Sbjct: 168 KFIRALKTRR 177


>UniRef50_A1AAW4 Putative uncharacterized protein n=8 Tax=Enterobacteriaceae
           RepID=A1AAW4_ECOK1
          Length = 286

 Score = 42.7 bits (99), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 46/101 (45%), Gaps = 23/101 (22%)

Query: 93  PDWQPDA---DFIRLAALWGVALREPVTTE--------ELASFIAYWQAEGKVFHHVQWQ 141
           PDW P+    +++R       ALR+P+ TE        EL  F        +V  H    
Sbjct: 195 PDWLPETLWHEWVRFRQ----ALRKPIRTEQGANGAIRELEKFRQQGFTPEQVIRH---- 246

Query: 142 QKLARSLQIGRASNGGLPK---RDVNTVSEPDSQIPPGFRG 179
             +A   Q   A  G  P+   R VNTVS PDS IPPGFRG
Sbjct: 247 -SIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG 286


>UniRef50_Q0T563 Putative bacteriophage protein n=2 Tax=Shigella flexneri
           RepID=Q0T563_SHIF8
          Length = 191

 Score = 40.4 bits (93), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 29/104 (27%)

Query: 93  PDWQPDADFIRLAALWG------VALREPVTTE--------ELASFIAYWQAEGKVFHHV 138
           PDW P+        LW        ALR+P+ TE        EL  F        +V  H 
Sbjct: 100 PDWLPET-------LWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRH- 151

Query: 139 QWQQKLARSLQIGRASNGGLPK---RDVNTVSEPDSQIPPGFRG 179
                +A   Q   A  G  P+   R VNTVS PDS IPPGFRG
Sbjct: 152 ----SIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG 191


>UniRef50_D0KEP7 Prevent-host-death family protein n=18 Tax=Bacteria
          RepID=D0KEP7_PECWW
          Length = 84

 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 28/58 (48%)

Query: 1  MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEE 58
          M+  +LT     I  L  D    +  AEG  +A+   N PAFY V PA  A L+ L E
Sbjct: 1  MAFNILTNTAASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAVFAYLMELAE 58


>UniRef50_P76065 Uncharacterized protein ydaU n=9 Tax=Enterobacteriaceae
           RepID=YDAU_ECOLI
          Length = 285

 Score = 39.7 bits (91), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 38/80 (47%), Gaps = 16/80 (20%)

Query: 111 ALREPVTTE--------ELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK-- 160
           ALR+P+ TE        EL  F     +  +V  H      +A   Q   A  G  P+  
Sbjct: 211 ALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRH-----SIANEYQGLFAPKGVRPETL 265

Query: 161 -RDVNTVSEPDSQIPPGFRG 179
            R VNTVS PDS IPPGFRG
Sbjct: 266 LRQVNTVSLPDSAIPPGFRG 285


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea...   281   7e-75
UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola...   227   1e-58
UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter...   198   5e-50
UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon...   148   1e-34
UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co...   148   1e-34
UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C...   145   8e-34
UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu...   142   5e-33
UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri...   139   3e-32
UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=...   137   1e-31
UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R...   128   6e-29
UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E...   126   5e-28
UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis...   122   3e-27
UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni...   120   3e-26
UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob...   119   3e-26

Sequences not found previously or not previously below threshold:

UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon...    94   2e-18
UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B...    67   3e-10
UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacter...    66   7e-10
UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoa...    59   7e-08
UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6...    51   1e-05
UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudom...    49   1e-04
UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reineke...    47   3e-04
UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Sacchar...    46   6e-04
UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine ...    46   8e-04
UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvib...    45   0.001
UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine ...    44   0.002
UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredin...    43   0.004
UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma p...    43   0.005

>UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS
          Length = 179

 Score =  281 bits (719), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 146/179 (81%), Positives = 164/179 (91%)

Query: 1   MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60
           MSSR+LT DV+GID L+HDH  VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL
Sbjct: 1   MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60

Query: 61  ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120
           +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE
Sbjct: 61  SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120

Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179
           LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG
Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179


>UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5
          Length = 164

 Score =  227 bits (578), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%)

Query: 4   RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63
           ++L  D + ++    +   +L K+  G++ V  N +P FY +TP  L ++  LE  L   
Sbjct: 2   KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58

Query: 64  GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123
              + LD    Q  +         KF+M+P W PD DFIR AALWG+ L E +   ELAS
Sbjct: 59  ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106

Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179
           FI+YWQAEG  FHH+QWQQKLARSLQ  R+ S     KRD+  +  PD  +P GFRG
Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163


>UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica
           RepID=B5R8P0_SALG2
          Length = 332

 Score =  198 bits (504), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 30  GVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVPMG 87
           GV +VF   A          L EL       AR  + V+    + Q     P  +  P+G
Sbjct: 125 GVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEPIG 184

Query: 88  KFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146
           KF+M  DW P  DF + AA WGVAL EP     EL +F  YW +EGKVF  +QW+QK AR
Sbjct: 185 KFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKFAR 244

Query: 147 SLQIGRASNGGLPKRDVNTVSEPDSQ 172
            +   RA      + + +   +PDS 
Sbjct: 245 HVNHVRAKAKPASRGESHAEIQPDST 270


>UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LC81_TOLAT
          Length = 225

 Score =  148 bits (373), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 17/173 (9%)

Query: 18  HDHQTVLAKAEGGVVAVFANNAPA--FYAVTPARLAELLA--LEEKLARPGSDVALDDQL 73
           H    +     G  +AV     P    Y VT  +L +L    ++  L +  +  A  D  
Sbjct: 33  HQPVPINYPELGRALAVEDPQVPGGFSYQVTARQLTQLFDELIQAGLIQLQAATASSDHY 92

Query: 74  YQEPQAAPVAV----PMGK--FAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127
           +Q+    P+ +    P+ +  FAM+ +WQPD  F  L  L G+ +      EE   FIAY
Sbjct: 93  HQQYVTLPLLISQVAPLAQQAFAMHTEWQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAY 151

Query: 128 WQAEGKVF-HHVQWQQKLARSLQIGR-----ASNGGLPKRDVNTVSEPDSQIP 174
           W    + F    QW  K  + L+  R       N G  +  V T ++  S  P
Sbjct: 152 WLGRPERFSTQHQWMMKFVKMLKSRRYQRRQTENIGYQQTTVATAAQNISTEP 204


>UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli
           RepID=B1LPY0_ECOSM
          Length = 346

 Score =  148 bits (372), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 35  FANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA----PVAVPMGKFA 90
           F +  P   +  P    +L       AR  +  +  + L  +         ++ P+GKF 
Sbjct: 145 FPSKTPKNGSRNPKEPKDLNPTHN--ARESAPTSEQEVLSLQAAPLVFLDGLSEPIGKFP 202

Query: 91  MYPDWQPDADFIRLAALWGVALRE-PVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M   W P  DF R AALWG+AL E   T  ELA+F  YW AEGKVF  +QW+QK AR + 
Sbjct: 203 MTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAAEGKVFTQIQWEQKFARHVN 262

Query: 150 IGRASNGGLPKRDVNTVSEPDSQ 172
             RA    + K  VN  + P   
Sbjct: 263 HVRAQVKPVSK-GVNHAAAPGGT 284


>UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26
          Length = 345

 Score =  145 bits (365), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 51  AELLALEEKLARPGSDVAL--DDQLYQ-EPQAAP-VAVPMGKFAMYPDWQPDADFIRLAA 106
            EL        R  +      D  L   EP+    ++ P+GKF M   WQP  DF + AA
Sbjct: 159 KELNPTHNARMRESATTGELNDASLQTAEPEYLDGLSEPIGKFPMTGVWQPSPDFRQRAA 218

Query: 107 LWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165
           +WG+AL EP  T  ELA+F  YW AEGKVF  VQW+QK AR +Q  RA    + K   + 
Sbjct: 219 VWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVQHVRAQVKPVSKGVSHA 278

Query: 166 VS 167
             
Sbjct: 279 AP 280


>UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342
           RepID=B5XSL9_KLEP3
          Length = 327

 Score =  142 bits (358), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 4/109 (3%)

Query: 68  ALDDQLYQEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFI 125
           A +    Q+P+  P V +P+GKF M+  W P  D+ RLAA WG+AL EP     ELA F 
Sbjct: 157 AQERNFPQQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFT 216

Query: 126 AYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD--VNTVSEPDSQ 172
           AYW++EGKVF  +QW+QK ARS+   RA +   P      +   +P + 
Sbjct: 217 AYWKSEGKVFTQIQWEQKFARSVISARAKSKPQPATGGKSHAGIQPVNT 265


>UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1
           RepID=A1AE33_ECOK1
          Length = 282

 Score =  139 bits (351), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 57  EEKLARPGSDVA----LDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVAL 112
                R G+  +       Q+ +      ++ P+GKF M   W P  DF R AALWG AL
Sbjct: 149 HIAHVREGAPTSEANSTPLQVAEPEFLDGLSEPIGKFPMTDGWLPSPDFRRRAALWGTAL 208

Query: 113 REP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171
            EP  T  ELA+F  YW AEGKVF  VQW+QK AR +   R  +    K D    +  D 
Sbjct: 209 PEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVNHIRGKSKNAGKSDELDWNNTDW 268

Query: 172 QI 173
             
Sbjct: 269 IE 270


>UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27
          Length = 268

 Score =  137 bits (345), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 54/86 (62%)

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145
            GKF M+  W P  DF+R+++L G+ L    T +ELA F  YW AEGK FHH QW+QKLA
Sbjct: 178 FGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHHAQWEQKLA 237

Query: 146 RSLQIGRASNGGLPKRDVNTVSEPDS 171
           R LQI R +    P+ +V   + P++
Sbjct: 238 RRLQISRQNKLTSPENNVPHWNSPEA 263


>UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38
          Length = 310

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 36  ANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP-VAVPMGKFAMYPD 94
           A++A         R  +L    +  A   ++          P+    V  P+GKF M  +
Sbjct: 110 ASDADKKRTREEKRREDLNPSLKGGADEKNEGDEKPVEPSAPRYLEGVNEPIGKFTMTSN 169

Query: 95  WQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153
           W P  DF + AA WG+ L +P     ELA F AYW +EGKVF  +QW+QK AR + + R+
Sbjct: 170 WLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQWEQKFARHVVLVRS 229

Query: 154 SNGGLPKRDVNTVSEPDSQ 172
                   + N   +  S 
Sbjct: 230 KQKPEAGGNENAGVQSGST 248


>UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli
           IAI39 RepID=B7NQU2_ECO7I
          Length = 277

 Score =  126 bits (315), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 48/75 (64%)

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145
           +GKF M+  WQP  DF+R ++L G+ L    T +ELA F  YW AEGK +H  QW+QKLA
Sbjct: 181 LGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELAEFRIYWMAEGKAYHQAQWEQKLA 240

Query: 146 RSLQIGRASNGGLPK 160
           R +Q  R  +G + K
Sbjct: 241 RRIQFCRQKSGEVRK 255


>UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NTN9_SODGM
          Length = 328

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 54/104 (51%)

Query: 59  KLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTT 118
            LA      A +  L   P +     P+ KF M+ DW  D +F R AA WG+ L EP T 
Sbjct: 161 SLASGHDPSANNAVLDNRPPSPGWFGPIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTA 220

Query: 119 EELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD 162
            ELA FI +W+AEGK  HH QW+Q L +S++  R   G   K  
Sbjct: 221 TELAEFITFWKAEGKAKHHAQWEQALTKSIRRSREFTGKRGKDG 264


>UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR
          Length = 91

 Score =  120 bits (300), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 91  MYPDWQPDADFIRLAALWGVALR-EPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M+ +WQP  DF+  A  WG AL  +     +L  FI YW AEG V  HVQW+QK AR L 
Sbjct: 1   MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60

Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178
             +    G  KR  ++  E P    P G++
Sbjct: 61  NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88


>UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
           RepID=B6XEX0_9ENTR
          Length = 317

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 38/181 (20%)

Query: 20  HQTVLAKAEGGVVAVFANNAPAFYAV-------------TPARLAELLALEEKLARPGSD 66
              +   +  G +++F+      Y +             TP+++ EL  L E        
Sbjct: 71  PVLLQELSSCGYISLFSAQDGKRYGLINNFTKHQVVNKKTPSKIKELNLLPENYGSDTGG 130

Query: 67  VAL---------------DDQLYQEPQA----APVAVPMG------KFAMYPDWQPDADF 101
           + L               +D    +P A        VP G      KF MY  W+P  DF
Sbjct: 131 LPLGKEGKGNIKPLSNTREDNFQSDPNANNSILNGRVPAGGFGVNDKFVMYHGWEPGQDF 190

Query: 102 IRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKR 161
            + AA WG  L+EP+   ELA FI YW AEGK   H QW+  LA+ L+  R  N  + K 
Sbjct: 191 TQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKGLKHSRLKNEKVVKN 250

Query: 162 D 162
            
Sbjct: 251 G 251


>UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas
           RepID=A4SJ92_AERS4
          Length = 232

 Score = 94.1 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 43  YAVTPARLAELLA--LEEKLARPGSDVALDDQLYQEPQAAPVA-------VPMGKFAMYP 93
           + V   +L EL    +E  L +  +     +  +Q P   P+        +P   F M+ 
Sbjct: 60  FQVNARQLTELFDELMEAGLLQVEAQAD-SEHYHQCPFQLPLLTQKVRSPLPERPFQMHL 118

Query: 94  DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQIGR 152
            W+PD +   LA L GV +      E+L  FIAYW    +VF    QW  K  R+L+  R
Sbjct: 119 QWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGRPEVFDSQHQWMLKFIRALKTRR 177


>UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B4RS94_ALTMD
          Length = 222

 Score = 67.1 bits (162), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 57  EEKLARPGSDVALDDQLYQEPQAAPV-AVPMGKF--------AMYPDWQPDAD-FIRLAA 106
           +  L      + L+  +  +    P+ +     F        AM   W P+   F  +A+
Sbjct: 76  QVGLVALPLALDLEHTINGKTLLLPLLSEAQSDFDQLHARHSAMTATWAPNKALFEEMAS 135

Query: 107 LWGVALREPVTTEELASFIAYWQAEG-KVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165
           L G+ + +     E+  FIAYW      VF   QW QK A +++  R ++G  P + V T
Sbjct: 136 LLGI-IDKTYDDNEVGEFIAYWLGRPSSVFSEFQWTQKFANNIKRKRLASGYAPTKVVGT 194


>UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacterium HTCC2255
           RepID=UPI0000E0EB69
          Length = 220

 Score = 65.6 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 12/129 (9%)

Query: 28  EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV-AVPM 86
              +  + ++    F             +E  L        L   +  +    P+  +  
Sbjct: 46  NKAIGELLSDPHTRFTQGRQINNVISELVEAGLVAINPKTDLSRSIQDQRLVLPLLNIKD 105

Query: 87  GKF--------AMYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYWQAEGK-VFH 136
            KF        +M+  W PD   +  LAA+ G+ L      E++  FI YW    +  F 
Sbjct: 106 DKFEALHNNTISMHLKWLPDQLLYKELAAMVGL-LATDYDLEDVGEFITYWMGRPQSRFT 164

Query: 137 HVQWQQKLA 145
             QW QK  
Sbjct: 165 PFQWTQKFV 173


>UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
           atlantica T6c RepID=Q15MT1_PSEA6
          Length = 224

 Score = 59.0 bits (141), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 55  ALEEKLARPGSDVALDDQLYQEPQAAPVA-VPMGKFA--------MYPDWQPDADFIR-L 104
            L  +L     +V L+     +    P+  +    ++        M  +W P+A   + L
Sbjct: 72  LLHVELVSFVEEVDLNKSFNGKILTLPLLMIKPDDYSQLHLQWQKMSANWTPNATLYQDL 131

Query: 105 AALWGVALREPVTTEELASFIAYWQAEGKV-FHHVQWQQKLARSLQIGR 152
           A L G+ +    +  EL  F+AYW    +  F   QW QK   +++  R
Sbjct: 132 AKLVGI-IDSDFSDHELGDFVAYWLGRPQTQFTQFQWTQKFVFNVKQKR 179


>UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V3X8_PSEA7
          Length = 320

 Score = 51.3 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 62  RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRE------P 115
           + G+    D      P+ AP   P  +F M+  W P       A  W   L         
Sbjct: 150 KVGTPPVSDIPPTTPPREAP--QPGQRFPMHDAWLPS------ARGWPATLTRNGMKNYQ 201

Query: 116 VTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQI 150
           +  E+L  F +YW    + +    QW+ +LA++L  
Sbjct: 202 LRDEDLLEFRSYWINRPEKYQSQGQWEHELAQNLLR 237


>UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1
           RepID=B0KHD4_PSEPG
          Length = 303

 Score = 48.6 bits (114), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 88  KFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG-KVFHHVQWQQKLAR 146
           +FAM  DWQP     +   L     ++ V  ++   F ++W A         +W+  LA 
Sbjct: 160 RFAMTADWQPSQKTFQAVLLQMGITQQAVDQDQFLEFRSFWLASPDDHRTQAKWEHALAS 219

Query: 147 SLQI--GRASNGG----LPKRDVNTVSEPDSQ 172
            L+    +A  GG      +    +  +P  Q
Sbjct: 220 HLKRNLRQAQAGGNTHANSRTGAGSAQQPGQQ 251


>UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297
           RepID=A4BGB5_9GAMM
          Length = 249

 Score = 46.7 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 73  LYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG 132
             ++ +A    V   K AM+ DW+P  DF RL       +       EL  F  Y+ A  
Sbjct: 131 YLRQGKAQRTPVTARKTAMHSDWEPSEDFPRLLEF--HDIPLQFALSELGKFRQYYLATD 188

Query: 133 KVFHHVQWQQKLARSLQ---IGRASNGGLPKRDVNTVSEP 169
           +    + W  +    +Q       +  G   R   T  EP
Sbjct: 189 R--KEISWDVRYLNWVQRAWHDSMNTKGRHDRQQATDGEP 226


>UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Saccharophagus degradans
           2-40 RepID=Q21NR3_SACD2
          Length = 384

 Score = 45.9 bits (107), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 70  DDQLYQEPQAAPVAVPMGKFAMYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYW 128
                +E Q   ++   GK  +  +W+P  D   +LA      + E    E+L +FI YW
Sbjct: 122 PTIRAEEAQVDEISQSFGKNFLGANWRPSRDTLTQLAQ---HNIPEHFALEQLPNFITYW 178

Query: 129 QAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQ 172
           +   +   H  W  K  + +    R       ++D         Q
Sbjct: 179 RERREA--HRSWGAKFVQHVIFKWRDFESKRNQKDQAIAMHAAWQ 221



 Score = 42.1 bits (97), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           AM+  WQP  D           +      + +  F+ YWQ  G V     W  K  + ++
Sbjct: 215 AMHAAWQPSLD-AMDVLTVHAGISRGFVEDAIPEFVLYWQERGDVLK--TWNSKFIQHVR 271

Query: 150 IGRASNGGLPKRDVNTVSEPDSQIP 174
           +         +   +    P++  P
Sbjct: 272 LQWKKYNSAVEHSTDPKPIPENWQP 296


>UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RW88_9GAMM
          Length = 376

 Score = 45.6 bits (106), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 95  WQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI--GR 152
           W P  D ++L AL    +      ++L  FI YW+  G+      W+ K  + +     R
Sbjct: 132 WSPSEDLLQLMAL-NHNIPRQFALDQLEDFIFYWRERGE--TSHAWENKFRQHVTNNWRR 188

Query: 153 ASNGGLPK 160
               G  +
Sbjct: 189 KQQTGESE 196


>UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus
           Ueda107 RepID=B3PDS0_CELJU
          Length = 367

 Score = 44.8 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 68  ALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127
               Q + +P+A P   P G   + P WQPD + ++  A     + E    ++L  FI Y
Sbjct: 78  DNPTQPHVQPEA-PQIHP-GANLISPHWQPDTELLKRIAE--HNIPEYFIRQQLPEFITY 133

Query: 128 WQAEGKVFHHVQWQQKLARSLQI 150
           W+  G++ H   W  K  + +  
Sbjct: 134 WRERGEISH--AWGAKFLKDVLH 154



 Score = 40.9 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 90  AMYPDWQPDADFIR-LAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSL 148
           AM+  W+P  D +  L    G++L      + +  F+ YWQ  G V     W  K  + +
Sbjct: 190 AMHSHWRPSRDALEVLVKHAGISLA--FVEDAIPEFVVYWQERGDVGR--TWNSKFIQHV 245

Query: 149 QIGRASNGGLPKRDVNTVSEPDSQIP 174
           +          + D      P+   P
Sbjct: 246 KRQWLRYNTALEHDSEPRRLPEHWQP 271


>UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z0T9_9GAMM
          Length = 386

 Score = 44.4 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
            M  DWQP      + AL    +      + L  F  +W   G +     W  K  + ++
Sbjct: 283 PMTGDWQPSEQVFEVLAL--SNIDRSYAMDRLGEFRVFWCDSGDL--QTSWNSKFLQHVK 338

Query: 150 IG-RASNGGLPKRDVNT 165
              R   G + K+  + 
Sbjct: 339 HQWRWEQGQISKKGSDH 355


>UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae
           T7901 RepID=C5BTM7_TERTT
          Length = 444

 Score = 43.2 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 93  PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI 150
           P WQP  D   LA L    + E    +++  FI YW+  G+      W  K  + +  
Sbjct: 133 PQWQP--DHHTLAQLAQHNIPENFARQQVPEFITYWRERGEA--QRSWGAKFLQHVIR 186



 Score = 40.9 bits (94), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 91  MYPDWQPDAD-FIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M+ +W+P  D    L    GV  R     + +  F+ YW+  G    H  W  K  + ++
Sbjct: 278 MHDNWRPSPDAMEMLTVHSGV--RSEFCEDAIPEFVFYWKDVGDA--HKNWNAKFVQHVR 333

Query: 150 IGRASNGGLPKRDVNTVSEPDSQIP 174
           +         +   +    P    P
Sbjct: 334 LQWKKFQSALEHSTDPKPIPVDWQP 358


>UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
           HTCC2207 RepID=Q1YQT9_9GAMM
          Length = 398

 Score = 42.9 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 69  LDDQLYQEPQAAPVA-VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127
                +    A P   +P     M   WQP  D +R  +  GV   +    +++  F+ Y
Sbjct: 130 QPAYNHSATTATPSNGIPTSAKTMGNSWQPSQDAMRQLSQLGVT--QLFAQQQIPQFVTY 187

Query: 128 WQAEGKVFHHVQWQQKLARSL-QIGRASNGGLPKRDVNTVSEPDS 171
           W+          W+ K  + + +  + +     +R        + 
Sbjct: 188 WRERN--VPRHSWESKFIKEVWRQWQQAEASSHRRRQEVALTNEW 230


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriacea...   235   6e-61
UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola...   195   8e-49
UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enter...   168   8e-41
UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia co...   156   4e-37
UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumon...   147   2e-34
UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root R...   142   4e-33
UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C...   141   7e-33
UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterob...   139   5e-32
UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escheri...   136   3e-31
UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneu...   129   4e-29
UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis...   126   4e-28
UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=...   121   9e-27
UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromon...   116   3e-25
UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacter...   113   3e-24
UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=E...   113   4e-24
UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoni...   107   2e-22
UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B...   104   2e-21
UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoa...   103   3e-21
UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reineke...    91   1e-17
UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Sacchar...    88   1e-16
UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudom...    85   9e-16
UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6...    81   1e-14
UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine ...    79   6e-14
UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvib...    75   8e-13
UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine ...    72   7e-12

Sequences not found previously or not previously below threshold:

UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredin...    65   9e-10
UniRef50_B8KWA0 Putative uncharacterized protein n=1 Tax=gamma p...    58   1e-07
UniRef50_Q1MZF8 Putative uncharacterized protein n=1 Tax=Bermane...    56   7e-07
UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma p...    53   3e-06
UniRef50_Q2BPP0 Putative uncharacterized protein n=1 Tax=Neptuni...    53   3e-06
UniRef50_A0Y8X7 Putative uncharacterized protein n=1 Tax=marine ...    53   4e-06
UniRef50_B8KNN9 Putative uncharacterized protein n=1 Tax=gamma p...    53   4e-06
UniRef50_A5W5W0 Putative uncharacterized protein n=1 Tax=Pseudom...    44   0.002
UniRef50_Q2G3Y1 Putative uncharacterized protein n=1 Tax=Novosph...    41   0.019

>UniRef50_B4TGX9 Primosomal protein 1 n=112 Tax=Enterobacteriaceae RepID=DNAT_SALHS
          Length = 179

 Score =  235 bits (599), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 146/179 (81%), Positives = 164/179 (91%)

Query: 1   MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL 60
           MSSR+LT DV+GID L+HDH  VLAK+ GG VAVFANNAPAFYAVTPAR+AELLALEEKL
Sbjct: 1   MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYAVTPARMAELLALEEKL 60

Query: 61  ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120
           +RPGSDVALD Q Y+EP+AAPVA+P GKFAMYP WQPDADF R AALWGVALREPVT EE
Sbjct: 61  SRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQRQAALWGVALREPVTAEE 120

Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG 179
           LA+FIAYWQAEGKVFHH+QWQQKLARS+QI R+SNGG+P+RD+N+VSEPD+ IPPGFRG
Sbjct: 121 LAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQRDINSVSEPDNHIPPGFRG 179


>UniRef50_B8D8I5 Primosomal protein 1 n=4 Tax=Buchnera aphidicola RepID=DNAT_BUCA5
          Length = 164

 Score =  195 bits (494), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 16/177 (9%)

Query: 4   RVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARP 63
           ++L  D + ++    +   +L K+  G++ V  N +P FY +TP  L ++  LE  L   
Sbjct: 2   KILISDNISLELFCKNPIKILEKSNKGIIGVLKNKSPIFYVITPYILKKIFDLECNL--- 58

Query: 64  GSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELAS 123
              + LD    Q  +         KF+M+P W PD DFIR AALWG+ L E +   ELAS
Sbjct: 59  ---LDLDKTKQQISK---------KFSMHPQWTPDKDFIRQAALWGITLTEEILESELAS 106

Query: 124 FIAYWQAEGKVFHHVQWQQKLARSLQIGRA-SNGGLPKRDVNTVSEPDSQIPPGFRG 179
           FI+YWQAEG  FHH+QWQQKLARSLQ  R+ S     KRD+  +  PD  +P GFRG
Sbjct: 107 FISYWQAEGCFFHHIQWQQKLARSLQKSRSISYMSQKKRDITYIPTPDQTVPNGFRG 163


>UniRef50_B5R8P0 Predicted phage protein n=9 Tax=Salmonella enterica subsp. enterica
           RepID=B5R8P0_SALG2
          Length = 332

 Score =  168 bits (425), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 28  EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAP--VAVP 85
             GV +VF   A          L EL       AR  + V+    + Q     P  +  P
Sbjct: 123 STGVGSVFKQEANKKGTNKDIDLKELNPTHNACARASAPVSQPGIMQQPVVTEPEYLNEP 182

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKL 144
           +GKF+M  DW P  DF + AA WGVAL EP     EL +F  YW +EGKVF  +QW+QK 
Sbjct: 183 IGKFSMMDDWHPSLDFRQRAAHWGVALPEPEYLPTELVAFRDYWTSEGKVFTQIQWEQKF 242

Query: 145 ARSLQIGRASNGGLPKRDVNTVSEPDSQ 172
           AR +   RA      + + +   +PDS 
Sbjct: 243 ARHVNHVRAKAKPASRGESHAEIQPDST 270


>UniRef50_B1LPY0 Conserved domain protein n=21 Tax=Escherichia coli
           RepID=B1LPY0_ECOSM
          Length = 346

 Score =  156 bits (393), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 35  FANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA----PVAVPMGKFA 90
           F +  P   +  P    +L       AR  +  +  + L  +         ++ P+GKF 
Sbjct: 145 FPSKTPKNGSRNPKEPKDLNPTHN--ARESAPTSEQEVLSLQAAPLVFLDGLSEPIGKFP 202

Query: 91  MYPDWQPDADFIRLAALWGVALRE-PVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M   W P  DF R AALWG+AL E   T  ELA+F  YW AEGKVF  +QW+QK AR + 
Sbjct: 203 MTDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAAEGKVFTQIQWEQKFARHVN 262

Query: 150 IGRASNGGLPKRDVNTVSEPDSQ 172
             RA    + K  VN  + P   
Sbjct: 263 HVRAQVKPVSK-GVNHAAAPGGT 284


>UniRef50_C4LC81 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LC81_TOLAT
          Length = 225

 Score =  147 bits (370), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 18  HDHQTVLAKAEGGVVAVFANNAPA--FYAVTPARLAELLA--LEEKLARPGSDVALDDQL 73
           H    +     G  +AV     P    Y VT  +L +L    ++  L +  +  A  D  
Sbjct: 33  HQPVPINYPELGRALAVEDPQVPGGFSYQVTARQLTQLFDELIQAGLIQLQAATASSDHY 92

Query: 74  YQEPQAAPVAVPM------GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127
           +Q+    P+ +          FAM+ +WQPD  F  L  L G+ +      EE   FIAY
Sbjct: 93  HQQYVTLPLLISQVAPLAQQAFAMHTEWQPDNQFTGLCQLCGL-IDPHYDEEERGEFIAY 151

Query: 128 WQAEGKVF-HHVQWQQKLARSLQIGR-----ASNGGLPKRDVNTVSEPDSQIP 174
           W    + F    QW  K  + L+  R       N G  +  V T ++  S  P
Sbjct: 152 WLGRPERFSTQHQWMMKFVKMLKSRRYQRRQTENIGYQQTTVATAAQNISTEP 204


>UniRef50_A4WB53 Pyocin large subunit-like protein n=2 Tax=root RepID=A4WB53_ENT38
          Length = 310

 Score =  142 bits (358), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 36  ANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAA-PVAVPMGKFAMYPD 94
           A++A         R  +L    +  A   ++          P+    V  P+GKF M  +
Sbjct: 110 ASDADKKRTREEKRREDLNPSLKGGADEKNEGDEKPVEPSAPRYLEGVNEPIGKFTMTSN 169

Query: 95  WQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153
           W P  DF + AA WG+ L +P     ELA F AYW +EGKVF  +QW+QK AR + + R+
Sbjct: 170 WLPSFDFRQRAAQWGIQLPDPDYLDSELAEFAAYWNSEGKVFTQIQWEQKFARHVVLVRS 229

Query: 154 SNGGLPKRDVNTVSEPDSQ 172
                   + N   +  S 
Sbjct: 230 KQKPEAGGNENAGVQSGST 248


>UniRef50_C8TPK4 Replication protein n=42 Tax=Escherichia RepID=C8TPK4_ECO26
          Length = 345

 Score =  141 bits (356), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 51  AELLALEEKLARPGSDV----ALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAA 106
            EL        R  +          Q  +      ++ P+GKF M   WQP  DF + AA
Sbjct: 159 KELNPTHNARMRESATTGELNDASLQTAEPEYLDGLSEPIGKFPMTGVWQPSPDFRQRAA 218

Query: 107 LWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165
           +WG+AL EP  T  ELA+F  YW AEGKVF  VQW+QK AR +Q  RA    + K   + 
Sbjct: 219 VWGMALPEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVQHVRAQVKPVSKGVSHA 278

Query: 166 VS 167
             
Sbjct: 279 AP 280


>UniRef50_B6XEX0 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
           RepID=B6XEX0_9ENTR
          Length = 317

 Score =  139 bits (349), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 38/183 (20%)

Query: 20  HQTVLAKAEGGVVAVFANNAPAFYAV-------------TPARLAELLALEEKLARPGSD 66
              +   +  G +++F+      Y +             TP+++ EL  L E        
Sbjct: 71  PVLLQELSSCGYISLFSAQDGKRYGLINNFTKHQVVNKKTPSKIKELNLLPENYGSDTGG 130

Query: 67  VAL---------------DDQLYQEPQA----APVAVPMG------KFAMYPDWQPDADF 101
           + L               +D    +P A        VP G      KF MY  W+P  DF
Sbjct: 131 LPLGKEGKGNIKPLSNTREDNFQSDPNANNSILNGRVPAGGFGVNDKFVMYHGWEPGQDF 190

Query: 102 IRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKR 161
            + AA WG  L+EP+   ELA FI YW AEGK   H QW+  LA+ L+  R  N  + K 
Sbjct: 191 TQKAAYWGTILKEPLQPHELAEFITYWGAEGKAKTHEQWELALAKGLKHSRLKNEKVVKN 250

Query: 162 DVN 164
              
Sbjct: 251 GTG 253


>UniRef50_A1AE33 Putative uncharacterized protein n=1 Tax=Escherichia coli APEC O1
           RepID=A1AE33_ECOK1
          Length = 282

 Score =  136 bits (343), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 57  EEKLARPGSDVAL----DDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVAL 112
                R G+  +       Q+ +      ++ P+GKF M   W P  DF R AALWG AL
Sbjct: 149 HIAHVREGAPTSEANSTPLQVAEPEFLDGLSEPIGKFPMTDGWLPSPDFRRRAALWGTAL 208

Query: 113 REP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171
            EP  T  ELA+F  YW AEGKVF  VQW+QK AR +   R  +    K D    +  D 
Sbjct: 209 PEPEFTPAELAAFRDYWMAEGKVFTQVQWEQKFARHVNHIRGKSKNAGKSDELDWNNTDW 268

Query: 172 QI 173
             
Sbjct: 269 IE 270


>UniRef50_B5XSL9 Conserved domain protein n=1 Tax=Klebsiella pneumoniae 342
           RepID=B5XSL9_KLEP3
          Length = 327

 Score =  129 bits (324), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 4/109 (3%)

Query: 68  ALDDQLYQEPQAAP-VAVPMGKFAMYPDWQPDADFIRLAALWGVALREP-VTTEELASFI 125
           A +    Q+P+  P V +P+GKF M+  W P  D+ RLAA WG+AL EP     ELA F 
Sbjct: 157 AQERNFPQQPKYLPGVDIPIGKFTMHDLWLPSQDWPRLAATWGIALPEPAYLPTELAEFT 216

Query: 126 AYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRD--VNTVSEPDSQ 172
           AYW++EGKVF  +QW+QK ARS+   RA +   P      +   +P + 
Sbjct: 217 AYWKSEGKVFTQIQWEQKFARSVISARAKSKPQPATGGKSHAGIQPVNT 265


>UniRef50_Q2NTN9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NTN9_SODGM
          Length = 328

 Score =  126 bits (316), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 4/146 (2%)

Query: 21  QTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEK----LARPGSDVALDDQLYQE 76
             +    E    +V      A   +      +   L       LA      A +  L   
Sbjct: 119 MKLTTPEECNAESVTPAFQKALPEIEREEDIKDNPLSSARVRSLASGHDPSANNAVLDNR 178

Query: 77  PQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFH 136
           P +     P+ KF M+ DW  D +F R AA WG+ L EP T  ELA FI +W+AEGK  H
Sbjct: 179 PPSPGWFGPIDKFTMHDDWLLDEEFSRKAATWGIVLDEPPTATELAEFITFWKAEGKAKH 238

Query: 137 HVQWQQKLARSLQIGRASNGGLPKRD 162
           H QW+Q L +S++  R   G   K  
Sbjct: 239 HAQWEQALTKSIRRSREFTGKRGKDG 264


>UniRef50_B7UGT1 Predicted primosomal protein n=2 Tax=root RepID=B7UGT1_ECO27
          Length = 268

 Score =  121 bits (303), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 15/161 (9%)

Query: 22  TVLAKAEGGVVAVFANNAPAFY----AVTPARLAELLALEEKLARPGSDVALDDQLYQEP 77
            +     G +      N P       +V  +   E    ++       +   ++ +    
Sbjct: 116 KLNDPKNGKL------NDPKNGMQNLSVNQSYNQEKERGDKTGGLVPPEPDANNAVINNF 169

Query: 78  QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137
                    GKF M+  W P  DF+R+++L G+ L    T +ELA F  YW AEGK FHH
Sbjct: 170 VPPGGLGQFGKFVMHELWSPSDDFLRVSSLQGINLDCQPTPQELAEFRVYWMAEGKAFHH 229

Query: 138 VQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFR 178
            QW+QKLAR LQI R +    P+ +V     P    P  + 
Sbjct: 230 AQWEQKLARRLQISRQNKLTSPENNV-----PHWNSPEAWE 265


>UniRef50_A4SJ92 Putative uncharacterized protein n=2 Tax=Aeromonas
           RepID=A4SJ92_AERS4
          Length = 232

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 23  VLAKAEGGVVAVFANNAPAFY--AVTPARLAELLA--LEEKLARPGSDVALDDQLYQEPQ 78
           +     G  +AV   + P+ +   V   +L EL    +E  L +  +    +   +Q P 
Sbjct: 38  LNYPELGRSLAVVDPSDPSGFCFQVNARQLTELFDELMEAGLLQVEAQADSE-HYHQCPF 96

Query: 79  AAPV-------AVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAE 131
             P+        +P   F M+  W+PD +   LA L GV +      E+L  FIAYW   
Sbjct: 97  QLPLLTQKVRSPLPERPFQMHLQWRPDEELPALARLCGV-IDASYNEEDLGEFIAYWLGR 155

Query: 132 GKVF-HHVQWQQKLARSLQIGR 152
            +VF    QW  K  R+L+  R
Sbjct: 156 PEVFDSQHQWMLKFIRALKTRR 177


>UniRef50_UPI0000E0EB69 flavodoxin n=1 Tax=Rhodobacterales bacterium HTCC2255
           RepID=UPI0000E0EB69
          Length = 220

 Score =  113 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 12/146 (8%)

Query: 28  EGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV-AVPM 86
              +  + ++    F             +E  L        L   +  +    P+  +  
Sbjct: 46  NKAIGELLSDPHTRFTQGRQINNVISELVEAGLVAINPKTDLSRSIQDQRLVLPLLNIKD 105

Query: 87  GKF--------AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGK-VFHH 137
            KF        +M+  W PD    +  A     L      E++  FI YW    +  F  
Sbjct: 106 DKFEALHNNTISMHLKWLPDQLLYKELAAMVGLLATDYDLEDVGEFITYWMGRPQSRFTP 165

Query: 138 VQWQQKLARSLQIGRASNGGLPKRDV 163
            QW QK    LQ  +A+     K   
Sbjct: 166 FQWTQKFV--LQRKQAAQRHNVKNTS 189


>UniRef50_B7NQU2 Putative primosomal protein from phage n=1 Tax=Escherichia coli
           IAI39 RepID=B7NQU2_ECO7I
          Length = 277

 Score =  113 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 24  LAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLAR--------------------- 62
                G V      N P    +   +   L   +  +                       
Sbjct: 101 NEPENGNVTE--NGNIPKNGMLNDPKNGMLNDPKNGIQNQSYNQSFNQERESRTKTGDSV 158

Query: 63  PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122
           P    A +  +            +GKF M+  WQP  DF+R ++L G+ L    T +ELA
Sbjct: 159 PHDPGANNAVMNN-FVPPGGPGQLGKFVMHEQWQPSDDFLRKSSLQGIYLDSLPTAQELA 217

Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171
            F  YW AEGK +H  QW+QKLAR +Q  R  +G + K         D 
Sbjct: 218 EFRIYWMAEGKAYHQAQWEQKLARRIQFCRQKSGEVRK--SLDWHNTDW 264


>UniRef50_C8SYQ2 Primosomal protein 1 n=1 Tax=Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884 RepID=C8SYQ2_KLEPR
          Length = 91

 Score =  107 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 91  MYPDWQPDADFIRLAALWGVALREP-VTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M+ +WQP  DF+  A  WG AL        +L  FI YW AEG V  HVQW+QK AR L 
Sbjct: 1   MHENWQPSEDFVMRARTWGHALPADGYKKSDLIEFITYWMAEGNVMQHVQWEQKFARLLM 60

Query: 150 IGRASNGGLPKRDVNTVSE-PDSQIPPGFR 178
             +    G  KR  ++  E P    P G++
Sbjct: 61  NRKKRAAG--KRGESSDDEVPHWNSPEGWK 88


>UniRef50_B4RS94 Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B4RS94_ALTMD
          Length = 222

 Score =  104 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 11/165 (6%)

Query: 11  VGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALD 70
           VG +        +  K    ++   + + P         L +    +  L      + L+
Sbjct: 31  VGANTATTSSAPIDYKHLLNLLNGDSKDEPYQRGRQINSLVK-QLEQVGLVALPLALDLE 89

Query: 71  DQLYQEPQAAPV-AVPMGKF--------AMYPDWQPDADFIRLAALWGVALREPVTTEEL 121
             +  +    P+ +     F        AM   W P+       A     + +     E+
Sbjct: 90  HTINGKTLLLPLLSEAQSDFDQLHARHSAMTATWAPNKALFEEMASLLGIIDKTYDDNEV 149

Query: 122 ASFIAYWQAEG-KVFHHVQWQQKLARSLQIGRASNGGLPKRDVNT 165
             FIAYW      VF   QW QK A +++  R ++G  P + V T
Sbjct: 150 GEFIAYWLGRPSSVFSEFQWTQKFANNIKRKRLASGYAPTKVVGT 194


>UniRef50_Q15MT1 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
           atlantica T6c RepID=Q15MT1_PSEA6
          Length = 224

 Score =  103 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 10/141 (7%)

Query: 25  AKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVA- 83
           A     ++++       F             L  +L     +V L+     +    P+  
Sbjct: 42  ALNYKSLLSMLNAKESKFNLGRQVNNLIKELLHVELVSFVEEVDLNKSFNGKILTLPLLM 101

Query: 84  VPMGKFA--------MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKV- 134
           +    ++        M  +W P+A   +  A     +    +  EL  F+AYW    +  
Sbjct: 102 IKPDDYSQLHLQWQKMSANWTPNATLYQDLAKLVGIIDSDFSDHELGDFVAYWLGRPQTQ 161

Query: 135 FHHVQWQQKLARSLQIGRASN 155
           F   QW QK   +++  R + 
Sbjct: 162 FTQFQWTQKFVFNVKQKRLAK 182


>UniRef50_A4BGB5 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297
           RepID=A4BGB5_9GAMM
          Length = 249

 Score = 91.4 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 62  RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEEL 121
           R  +    +    ++ +A    V   K AM+ DW+P  DF RL       +       EL
Sbjct: 120 RQLNQSDDELAYLRQGKAQRTPVTARKTAMHSDWEPSEDFPRLLEF--HDIPLQFALSEL 177

Query: 122 ASFIAYWQAEGKVFHHVQWQQKLARSLQ---IGRASNGGLPKRDVNTVSEPD 170
             F  Y+ A  +    + W  +    +Q       +  G   R   T  EP 
Sbjct: 178 GKFRQYYLATDR--KEISWDVRYLNWVQRAWHDSMNTKGRHDRQQATDGEPA 227


>UniRef50_Q21NR3 Putative uncharacterized protein n=1 Tax=Saccharophagus degradans
           2-40 RepID=Q21NR3_SACD2
          Length = 384

 Score = 88.0 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 63  PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122
                       +E Q   ++   GK  +  +W+P  D +   A     + E    E+L 
Sbjct: 115 VSMPQKGPTIRAEEAQVDEISQSFGKNFLGANWRPSRDTLTQLAQ--HNIPEHFALEQLP 172

Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQ 172
           +FI YW+   +   H  W  K  + +    R       ++D         Q
Sbjct: 173 NFITYWRERREA--HRSWGAKFVQHVIFKWRDFESKRNQKDQAIAMHAAWQ 221



 Score = 56.0 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 82  VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQ 141
           V        +  +WQP  D   +  L    +        L  FI YW+   +V  H  W 
Sbjct: 281 VEHSTDPKPIPENWQPSNDVYDVLRL--ANIDLAFAQSVLPEFILYWRDSKQV--HTSWN 336

Query: 142 QKLARSLQI---GRASNGGLPKRDVNTVS 167
            +  + ++     R +NG           
Sbjct: 337 TRFLQHVKFHWAKRLANGTATNNGTQPAQ 365



 Score = 55.2 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 83  AVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQ 142
                  AM+  WQP  D + +       +      + +  F+ YWQ  G V     W  
Sbjct: 208 NQKDQAIAMHAAWQPSLDAMDVL-TVHAGISRGFVEDAIPEFVLYWQERGDVLK--TWNS 264

Query: 143 KLARSLQIGRASNGGLPKRDVN-TVSEPDSQIPPGFR 178
           K  + +   R           + T  +P   IP  ++
Sbjct: 265 KFIQHV---RLQWKKYNSAVEHSTDPKP---IPENWQ 295


>UniRef50_B0KHD4 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1
           RepID=B0KHD4_PSEPG
          Length = 303

 Score = 85.3 bits (209), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 15/119 (12%)

Query: 69  LDDQLYQEPQAAPVAVPMG--------KFAMYPDWQPDADFIRLAALWGVALREPVTTEE 120
               +  +        P          +FAM  DWQP     +   L     ++ V  ++
Sbjct: 133 NPTIIDTDTYTEETPPPAREDDFDSRVRFAMTADWQPSQKTFQAVLLQMGITQQAVDQDQ 192

Query: 121 LASFIAYWQAEG-KVFHHVQWQQKLARSLQI--GRASNGG----LPKRDVNTVSEPDSQ 172
              F ++W A         +W+  LA  L+    +A  GG      +    +  +P  Q
Sbjct: 193 FLEFRSFWLASPDDHRTQAKWEHALASHLKRNLRQAQAGGNTHANSRTGAGSAQQPGQQ 251


>UniRef50_A6V3X8 LvrA n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V3X8_PSEA7
          Length = 320

 Score = 81.4 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 15/117 (12%)

Query: 62  RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRE------P 115
           + G+    D      P+ AP   P  +F M+  W P       A  W   L         
Sbjct: 150 KVGTPPVSDIPPTTPPREAP--QPGQRFPMHDAWLPS------ARGWPATLTRNGMKNYQ 201

Query: 116 VTTEELASFIAYWQAEGKVF-HHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDS 171
           +  E+L  F +YW    + +    QW+ +LA++L   +  +           +    
Sbjct: 202 LRDEDLLEFRSYWINRPEKYQSQGQWEHELAQNLLRNQRFDQNRSSYGNQAGNAEGQ 258


>UniRef50_A0Z0T9 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z0T9_9GAMM
          Length = 386

 Score = 79.1 bits (193), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 78  QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137
             A +        M  DWQP      + AL    +      + L  F  +W   G +   
Sbjct: 271 FQAGLGHSPEPRPMTGDWQPSEQVFEVLAL--SNIDRSYAMDRLGEFRVFWCDSGDL--Q 326

Query: 138 VQWQQKLARSLQIG-RASNGGLPKRDVNT 165
             W  K  + ++   R   G + K+  + 
Sbjct: 327 TSWNSKFLQHVKHQWRWEQGQISKKGSDH 355


>UniRef50_B3PDS0 Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus
           Ueda107 RepID=B3PDS0_CELJU
          Length = 367

 Score = 75.3 bits (183), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 60  LARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTE 119
           LA          Q + +P+A P   P G   + P WQPD + ++  A     + E    +
Sbjct: 70  LAFDNHLADNPTQPHVQPEA-PQIHP-GANLISPHWQPDTELLKRIAE--HNIPEYFIRQ 125

Query: 120 ELASFIAYWQAEGKVFHHVQWQQKLARSLQIG------------RASNGGLPKRDVNTVS 167
           +L  FI YW+  G++ H   W  K  + +               R       + D     
Sbjct: 126 QLPEFITYWRERGEISH--AWGAKFLKDVLHKWRHHQTQIARETREQQERRQRDDEAVFL 183

Query: 168 EPDS 171
           + D 
Sbjct: 184 QRDQ 187



 Score = 52.5 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 62  RPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIR-LAALWGVALREPVTTEE 120
           +   +     +  Q    A       + AM+  W+P  D +  L    G++L      + 
Sbjct: 162 QIARETREQQERRQRDDEAVFLQRDQETAMHSHWRPSRDALEVLVKHAGISL--AFVEDA 219

Query: 121 LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIP 174
           +  F+ YWQ  G V     W  K  + ++          + D      P+   P
Sbjct: 220 IPEFVVYWQERGDVG--RTWNSKFIQHVKRQWLRYNTALEHDSEPRRLPEHWQP 271



 Score = 52.2 bits (123), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 93  PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152
             WQP  D   +  L    +      ++L  F+ +W+   ++  H  W  K  + ++   
Sbjct: 267 EHWQPSKDVYDVLKL--ANIDLNFAQQQLPEFVLFWRDSNQL--HSSWNTKFLQHVKFHW 322

Query: 153 AS----NGGLPKRDVNTVSEPDSQIPPG 176
           A     N     +      +P +  P G
Sbjct: 323 AKQHALNTDPSTQVNAHAGQPLAH-PSG 349


>UniRef50_B7RW88 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RW88_9GAMM
          Length = 376

 Score = 72.2 bits (175), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 94  DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI--G 151
            W P  D ++L AL    +      ++L  FI YW+  G+      W+ K  + +     
Sbjct: 131 HWSPSEDLLQLMAL-NHNIPRQFALDQLEDFIFYWRERGE--TSHAWENKFRQHVTNNWR 187

Query: 152 RASNGGLPK 160
           R    G  +
Sbjct: 188 RKQQTGESE 196



 Score = 57.6 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 93  PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152
             WQP  D   +  +  + L        L  FI YW+   +   H  W  K  +  +   
Sbjct: 280 DHWQPSDDVYDILRMSHIDLD--FARSLLPEFIVYWKDSNQ--THTSWNSKFLQHAKYHW 335

Query: 153 ASNGGLPKRDVNTVSEPDSQI 173
           A    L + + +   +  S  
Sbjct: 336 AKRHQLQQTENSHGGQQGSHS 356



 Score = 44.5 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 87  GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146
              A+   W+P  D + +    G  +      + +  FI YW+  G     +    K  +
Sbjct: 201 QPLALDNHWRPSMDAMEIMERGG--ISRDFIEQAVPEFILYWRERGAAPKEL--NSKFIQ 256

Query: 147 SLQ------IGRASNGGLPKRDVNTVSEPD 170
            ++           +   PKR V+     D
Sbjct: 257 HIRIQWARYSSSLEHSTEPKRIVDHWQPSD 286


>UniRef50_C5BTM7 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae
           T7901 RepID=C5BTM7_TERTT
          Length = 444

 Score = 65.3 bits (157), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 91  MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQI 150
           + P WQPD     LA L    + E    +++  FI YW+  G+      W  K  + +  
Sbjct: 131 IGPQWQPDHHT--LAQLAQHNIPENFARQQVPEFITYWRERGEA--QRSWGAKFLQHVIR 186

Query: 151 G-RASNGGLPKRDVNTVSEPDS 171
             R     L ++          
Sbjct: 187 QWRQYEAQLHRQQKANEMLASW 208



 Score = 50.6 bits (119), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 82  VAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQ 141
           +        +  DWQP  D   +  L    +        +  F+ YW+   ++  H  W 
Sbjct: 343 LEHSTDPKPIPVDWQPSEDVYDVLRL--ANIDLRFAHGLIPEFVIYWRDSNQL--HTSWN 398

Query: 142 QKLARSLQIGRASNGGLPKRDVNTVSE 168
            +  +  +   A   G       T  +
Sbjct: 399 TRFLQHAKREWARQHGQASATNGTPQQ 425



 Score = 49.8 bits (117), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 91  MYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           M+ +W+P  D + +       +R     + +  F+ YW+  G    H  W  K  + ++
Sbjct: 278 MHDNWRPSPDAMEML-TVHSGVRSEFCEDAIPEFVFYWKDVGDA--HKNWNAKFVQHVR 333



 Score = 47.9 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 69  LDDQLYQEPQAAPVAVPMGK-FAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAY 127
           L   + Q  Q         K   M   W+P  + I       + ++       +A F+ +
Sbjct: 181 LQHVIRQWRQYEAQLHRQQKANEMLASWRPSDETIETLET-NLGIKREFLEGIIAEFVVF 239

Query: 128 WQAEGKVFHHVQWQQKLARSLQIG-RASNGGLPKRDVNTVSEPDSQIPP 175
           W+  G+   +  W  K         R       ++D  ++   + +  P
Sbjct: 240 WRERGEAAEN--WDSKFIAHATREWRRFCERQNQQDQGSLMHDNWRPSP 286


>UniRef50_B8KWA0 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
           NOR51-B RepID=B8KWA0_9GAMM
          Length = 359

 Score = 57.9 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
            M   WQPD +   +  + GV          +  F  YW+   ++  H  W  K  + ++
Sbjct: 260 PMPEQWQPDENVYDILRMAGV--DREFAVALVPEFALYWRDSNEL--HTSWNSKFLQHVK 315

Query: 150 IG-RASNGGLPKRDVNTVSEPDSQIPPGFR 178
              R S     + + +   +   Q  PG R
Sbjct: 316 HQWRWSQ---QRGNDHGGQQAHRQGGPGGR 342



 Score = 39.8 bits (91), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 94  DWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA 153
           DWQP AD + + +     +         A FI YW+  G     V    K    ++   A
Sbjct: 191 DWQPSADAMEIMS--RADIDPEFIDSLRAEFILYWRERGGPPKEV--NSKFIGYVRQRWA 246

Query: 154 SNGGLPKRDVNTVSEPDSQIPP 175
                          P+   P 
Sbjct: 247 RFSASLHHSTEPRPMPEQWQPD 268


>UniRef50_Q1MZF8 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1MZF8_9GAMM
          Length = 365

 Score = 55.6 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 78  QAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHH 137
            +A +A P     M   W+P  +   +  L    +        +  F+ YW+   ++  H
Sbjct: 259 FSASLAHPSDPVPMQDGWEPAVEVYEI--LEMANIDRQFAQSLIKEFVLYWRDSNQL--H 314

Query: 138 VQWQQKLARSLQI---GRASNGGLPKRDV 163
             W  K  +  +     R +  G      
Sbjct: 315 TSWNSKFLQHAKHIWSKRLNGQGNSATSQ 343



 Score = 45.6 bits (106), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 63  PGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELA 122
             +         ++           K A++PDW+PD + ++      + + +     +L 
Sbjct: 95  EKAPSDSKRSRNEQAFEQAKQQ--YKQAIHPDWRPDTETLKYIE-QTLGIPKRYAQSQLQ 151

Query: 123 SFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVS 167
            F+ ++Q++G +     W     R +      +   P        
Sbjct: 152 DFVFHYQSQGTLAT--SWSTMFIRWVNKRFKEDQAHPAVFQGDAQ 194



 Score = 42.1 bits (97), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 87  GKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLAR 146
            K AM+  WQP A  + +    GV        + ++ F+ +W  +G+   H  W  K   
Sbjct: 195 RKQAMWDSWQPQAATLDILQKAGV--EPSFIQDCVSEFVLFWMEKGEA--HDTWNTKFVA 250

Query: 147 SLQIG 151
            ++  
Sbjct: 251 WVRRQ 255


>UniRef50_Q1YQT9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
           HTCC2207 RepID=Q1YQT9_9GAMM
          Length = 398

 Score = 53.3 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 84  VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQK 143
           +P     M   WQP  D +R  +  GV   +    +++  F+ YW+      H   W+ K
Sbjct: 146 IPTSAKTMGNSWQPSQDAMRQLSQLGVT--QLFAQQQIPQFVTYWRERNVPRH--SWESK 201

Query: 144 LARSLQIG-RASNGGLPKRDVNTVSEPDS 171
             + +    + +     +R        + 
Sbjct: 202 FIKEVWRQWQQAEASSHRRRQEVALTNEW 230



 Score = 52.5 bits (124), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
           A+  +W+P  D +++    G  +      + +  FI YW+  G +     W  K  + ++
Sbjct: 225 ALTNEWRPSRDALQILIGQGG-INSNFIEDSIPEFILYWRDRGDLSS--TWDSKFIQHIR 281

Query: 150 IG-RASNGGLPKRDVNTVSEPDSQ 172
              +  +G + +  +    E   Q
Sbjct: 282 RQWQFFSGMMEQDSMPRKIEAQWQ 305



 Score = 51.8 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 93  PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152
             WQP A    +  L    +      + +  FI YWQ  G       W  K  + ++   
Sbjct: 302 AQWQPRASVYDV--LQMANINRQFAEQLVPEFILYWQENG--MPQSSWSTKFLQFVKRQW 357

Query: 153 ASNGGLPKRDVNTVSEPDSQIPPG 176
           A +      D     +  S  P G
Sbjct: 358 ARHIQPSSTDTAHGKQQGSN-PNG 380


>UniRef50_Q2BPP0 Putative uncharacterized protein n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BPP0_9GAMM
          Length = 324

 Score = 53.3 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
            M   WQP A+F   A L    +        L  F+ YW  + +      W QK    ++
Sbjct: 217 PMELGWQPSANFY--ALLPRHNISPQFAQTCLDEFVLYWLDKDR--KETNWDQKFLGWVK 272

Query: 150 I---GRASNGGLPKRDVNTVSEPDSQIPP 175
                + +  G  +R  N      +   P
Sbjct: 273 REWVKKQTQEGRQQRLSNEQQAGFNHENP 301


>UniRef50_A0Y8X7 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0Y8X7_9GAMM
          Length = 384

 Score = 53.3 bits (126), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 16/152 (10%)

Query: 26  KAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVP 85
             + GV+ + +        ++ A    + + E  L R  S     +Q   +  +      
Sbjct: 75  LKDKGVILIESPPLQQGERLSFAMNETVNSTEA-LERASSTTRTKEQAVGQRSS------ 127

Query: 86  MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLA 145
            G   +  +W P  D ++L  L    +      ++   F+ YWQ   +V H   W  K  
Sbjct: 128 -GANLLAKNWHPPDDLLQLLEL-NHNISRDFALQQREDFLIYWQDRQQVSH--SWPSKFR 183

Query: 146 RSLQ-----IGRASNGGLPKRDVNTVSEPDSQ 172
           + +                ++  +        
Sbjct: 184 QHVLKQWRFHQSRVAEVETRQVQSNALNSSWH 215



 Score = 49.1 bits (115), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 93  PDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGR 152
            +WQP  D   +  L    +        +A F+ +W+   ++     W  K  +  +   
Sbjct: 285 ANWQPSEDVYDILRL--ANIDIAFARGLVAEFVLFWRDTQQI--QRSWNTKFLQHAKY-- 338

Query: 153 ASNGGLPKRDVNTVSE 168
                  +   +   +
Sbjct: 339 -QWATRHQMGQHYAGQ 353



 Score = 47.2 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 73  LYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEG 132
            +Q   A      +   A+   W P  D + +  L    +     T+ +  F+ YW+  G
Sbjct: 192 FHQSRVAEVETRQVQSNALNSSWHPSQDALDI--LHRADVNPDFITDAIPEFVLYWRERG 249

Query: 133 KVFHHVQWQQKLARSLQIG 151
           +   H  W  K    ++  
Sbjct: 250 EA--HSTWNSKFIAHIRRQ 266


>UniRef50_B8KNN9 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
           NOR5-3 RepID=B8KNN9_9GAMM
          Length = 256

 Score = 52.9 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 90  AMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQ 149
            + PD+QP  D + L   +   +      +++  F  YW+  G   H   WQ +  + +Q
Sbjct: 157 PLPPDFQPSEDMLELLERF-HGVPRGFALQQIEDFTLYWRERGSAGH--AWQNRFKQHVQ 213

Query: 150 IGRASNGGLPKRDVNTVSE 168
             + +        V+   +
Sbjct: 214 F-QWARQQQEATGVDHAGQ 231


>UniRef50_A5W5W0 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1
           RepID=A5W5W0_PSEP1
          Length = 258

 Score = 44.1 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%)

Query: 70  DDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQ 129
           ++   Q         P     M  +W+PD   ++  A       +  T E  A+F+ ++ 
Sbjct: 144 EEHNTQRAGEESGVDPKLPTEMDLEWKPDDKLLKAYAKRMGIPVDLFTDEATAAFVCHYS 203

Query: 130 AEGKVFHHVQWQQKLARSLQIGRASNGGL 158
           A G+      W   L + ++   A+   +
Sbjct: 204 ASGRCETQASWVSLLVKWVKRDMATASNV 232


>UniRef50_Q2G3Y1 Putative uncharacterized protein n=1 Tax=Novosphingobium
           aromaticivorans DSM 12444 RepID=Q2G3Y1_NOVAD
          Length = 247

 Score = 41.0 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 41/168 (24%), Gaps = 19/168 (11%)

Query: 23  VLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPV 82
           V      GV+            +   RLA     + + ++  +      +  Q+    P 
Sbjct: 59  VAELEASGVIVDTGERIGRTKQIKVYRLAMETVPKTEQSQKRNSTENAPKQSQKRDTEPS 118

Query: 83  AVP----------------MGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIA 126
             P                   F M  DW P      + AL  +         E+  F  
Sbjct: 119 KEPSCSTEPKGSSEHKAREAKPFRMMADWSPSPLPSNVQALVDLWPPGRF-EREIDQFRD 177

Query: 127 YWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIP 174
           YW           W +     ++          + D    ++     P
Sbjct: 178 YWLDRTDRRP--GWDRTFHNRIRDIHDRVMRETRNDRPASNDQGITNP 223


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.303    0.119    0.316 

Lambda     K      H
   0.267   0.0357    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 861,134,326
Number of Sequences: 3077464
Number of extensions: 27967395
Number of successful extensions: 80250
Number of sequences better than 1.0e-01: 36
Number of HSP's better than  0.1 without gapping: 55
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 80063
Number of HSP's gapped (non-prelim): 116
length of query: 179
length of database: 1,040,396,356
effective HSP length: 120
effective length of query: 59
effective length of database: 671,100,676
effective search space: 39594939884
effective search space used: 39594939884
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 88 (38.7 bits)
