Phyre 2 alignment of P0A8J2 with c3h7hA_

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Job Description | P0A8J2
Confidence | 7.31% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 14 | Aligned Residues | 17
% Identity | 41% | Template | c3h7hA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:transcription elongation factor spt4; | PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
Resolution | 1.55 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 30 | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | 40 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
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Query Sequence |  | G | V | V | A | V | F | A | N | N | . | . | . | . | . | . | . | . | . | . | . | . | . | A | P | A | F | Y | A | V | T
Query Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
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Template Sequence |  | G | I | I | A | M | M | S | P | E | D | S | W | V | S | K | W | Q | R | V | S | N | F | K | P | G | V | Y | A | V | S
Template Known Secondary structure |  |  |  |  |  |  | S |  | G | G | G |  |  |  |  |  |  | T | T |  | T | T | S |  | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 59 | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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