Phyre 2 alignment of P0A8J2 with d1f44a1

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Job Description | P0A8J2
Confidence | 6.15% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 18 | Aligned Residues | 33
% Identity | 21% | Template | d1f44a1
SCOP info | SAM domain-like | lambda integrase-like, N-terminal domain | lambda integrase-like, N-terminal domain
Resolution | 2.05

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | D | F | I | R | L | A | A | L | W | G | V | A | L | R | E | P | V | T | T | E | E | L | A | S | F | I | A | Y | W | Q | A | E | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | S | W | A | A | W | C | K | L | N | N | R | . | K | W | F | P | A | E | P | E | D | V | R | D | Y | L | L | Y | L | Q | A | R | G
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T |  | . |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 50 | . | . | . | . | . | . | . | . | . | 60 | . |  | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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