Phyre 2 alignment of P0A8J2 with c2l4uA_

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Job Description | P0A8J2
Confidence | 11.75% | Date | Thu Jan 5 11:07:58 GMT 2012
Rank | 8 | Aligned Residues | 22
% Identity | 41% | Template | c2l4uA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:24mer peptide from protein ste5; | PDBTitle: solution structure of ste5pm24 in the presence of sds micelle
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | A | E | G | K | V | F | H | H | V | Q | W | Q | Q | K | L | A | R | S | L | Q | I | G | R | A | S | N | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Sequence |  | L | S | R | G | K | . | . | . | . | . | K | W | T | E | K | L | A | R | . | F | Q | R | S | S | A | K | K | K
Template Known Secondary structure |  |  | T | T |  | G | . | . | . | . | . | G | G |  |  |  |  | T | T | . | T | T |  |  |  |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . |  |  |  |  |  | . | . | . | 10 | . | . | . | . |  | . | . | . | . | . | 20 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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