BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (97 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAU8 Uncharacterized protein ybfE n=91 Tax=Gammaprote... 192 4e-48 UniRef50_A6T6D0 LexA regulated n=54 Tax=Gammaproteobacteria RepI... 177 1e-43 UniRef50_A0KIH0 Conserved helix-turn-helix protein n=21 Tax=Gamm... 129 3e-29 UniRef50_Q082Q8 CopG domain protein DNA-binding domain protein n... 114 1e-24 UniRef50_B8CPA7 Helix-turn-helix protein, CopG n=13 Tax=Alteromo... 111 8e-24 UniRef50_A8FVS2 CopG domain protein DNA-binding domain protein n... 106 2e-22 UniRef50_A6VMY2 Putative uncharacterized protein n=1 Tax=Actinob... 80 2e-14 UniRef50_A6VZB9 Conserved helix-turn-helix protein n=2 Tax=Marin... 78 8e-14 UniRef50_Q1N6G6 Putative uncharacterized protein n=1 Tax=Bermane... 71 8e-12 UniRef50_A4G373 Putative uncharacterized protein n=1 Tax=Hermini... 44 0.002 >UniRef50_P0AAU8 Uncharacterized protein ybfE n=91 Tax=Gammaproteobacteria RepID=YBFE_ECO57 Length = 97 Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE Sbjct: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV Sbjct: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 >UniRef50_A6T6D0 LexA regulated n=54 Tax=Gammaproteobacteria RepID=A6T6D0_KLEP7 Length = 97 Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/97 (91%), Positives = 94/97 (96%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKEQTDRTTLDLFA+ERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNA+ Sbjct: 1 MAKEQTDRTTLDLFANERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 AV+ALNELAE+RNMSRS+LIEEMLM QL ALRSQG V Sbjct: 61 AVDALNELAEARNMSRSDLIEEMLMTQLTALRSQGKV 97 >UniRef50_A0KIH0 Conserved helix-turn-helix protein n=21 Tax=Gammaproteobacteria RepID=A0KIH0_AERHH Length = 98 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/97 (65%), Positives = 81/97 (83%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAK+QTDRTTLDLFA+E+RPGRPKTNPL R+ QL+INKRNQLKRD+ GLKRVELK+ AE Sbjct: 1 MAKQQTDRTTLDLFANEKRPGRPKTNPLPRETQLKINKRNQLKRDRENGLKRVELKVEAE 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 +E LN+LA +N+SR+ELI+ +L QQ+ + + GI Sbjct: 61 LLERLNQLALQQNVSRAELIQSILKQQIESAHAAGIT 97 >UniRef50_Q082Q8 CopG domain protein DNA-binding domain protein n=5 Tax=Alteromonadales RepID=Q082Q8_SHEFN Length = 90 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/88 (62%), Positives = 74/88 (84%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE TDRTT+DLFA E R GRP++NPLSR++QL+INKRNQ++RD+ GLKR+ELK++ + Sbjct: 1 MAKETTDRTTIDLFAAETRRGRPRSNPLSREQQLKINKRNQIQRDRANGLKRIELKVSQD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQL 88 +ALN+ A + N+SRS+LIE +L QQL Sbjct: 61 LYDALNQQALNSNISRSQLIEFILQQQL 88 >UniRef50_B8CPA7 Helix-turn-helix protein, CopG n=13 Tax=Alteromonadales RepID=B8CPA7_SHEPW Length = 102 Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 52/84 (61%), Positives = 71/84 (84%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE +DRTT+DLFA E+R GRP++NPL RD+QL+INKRNQ++RD+ GLKR+ELK++ + Sbjct: 13 MAKETSDRTTIDLFATEKRRGRPRSNPLPRDQQLKINKRNQIQRDRANGLKRIELKVSQD 72 Query: 61 AVEALNELAESRNMSRSELIEEML 84 +ALNE A + N+SRS+LIE +L Sbjct: 73 LYDALNEQAMASNISRSQLIESIL 96 >UniRef50_A8FVS2 CopG domain protein DNA-binding domain protein n=10 Tax=Gammaproteobacteria RepID=A8FVS2_SHESH Length = 91 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/89 (56%), Positives = 72/89 (80%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE +DRTT+DLFA E R GRP++NPL RD+QL++NKRNQ++RD+ GLKR+ELK++ + Sbjct: 1 MAKETSDRTTIDLFATETRRGRPRSNPLPRDQQLKVNKRNQIQRDRANGLKRIELKVSQD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLA 89 +ALN+ A + +SRS+LIE +L +Q+ Sbjct: 61 LYDALNDKALASKISRSQLIELILQEQVT 89 >UniRef50_A6VMY2 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMY2_ACTSZ Length = 100 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKL 57 MAK+ D TLDLFA ERR GRP++NPLSR++Q+RINKRNQL+RDK GLK +K+ Sbjct: 13 MAKQSADCITLDLFADERRVGRPRSNPLSREQQIRINKRNQLRRDKSSGLKTCRIKI 69 >UniRef50_A6VZB9 Conserved helix-turn-helix protein n=2 Tax=Marinomonas RepID=A6VZB9_MARMS Length = 96 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAK +DR T+DLF + PGRP+T PL+R +QL+INKR Q +++K +GLKR+EL + + Sbjct: 1 MAKASSDRNTIDLFG--KSPGRPRTQPLTRKDQLKINKRAQREKEKAQGLKRLELIIEQD 58 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRS 93 +E L++L E + R+E + + + + L +S Sbjct: 59 IIEKLDKLCEMNGLKRAEWLTQQINKSLDKPKS 91 >UniRef50_Q1N6G6 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N6G6_9GAMM Length = 115 Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 M + DRTT+D+F + R GRP++NP RD Q+RINKR Q +RD+ +G++R+E+K+ Sbjct: 1 MGVQLEDRTTIDMF-NARAKGRPRSNPYPRDVQIRINKRLQRERDRDKGMRRMEVKIPNA 59 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRS 93 VE L+E A+ + +R+E +E L L S Sbjct: 60 LVEKLDEFAKEQACTRTEAVELGLNAWFEMLES 92 >UniRef50_A4G373 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G373_HERAR Length = 83 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 23 PKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEE 82 P D + I++R Q KRD+ GL +KLN++ V+ L LA+ R + +E+ E Sbjct: 16 PGAADFGSDSAVVIDRREQRKRDQALGLIPFAVKLNSDLVQQLQALAKERGLDLNEVTAE 75 Query: 83 MLMQQLAA 90 +LM+ L A Sbjct: 76 VLMKGLKA 83 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1N6G6 Putative uncharacterized protein n=1 Tax=Bermane... 111 7e-24 UniRef50_A6T6D0 LexA regulated n=54 Tax=Gammaproteobacteria RepI... 110 1e-23 UniRef50_P0AAU8 Uncharacterized protein ybfE n=91 Tax=Gammaprote... 109 2e-23 UniRef50_A0KIH0 Conserved helix-turn-helix protein n=21 Tax=Gamm... 108 7e-23 UniRef50_B8CPA7 Helix-turn-helix protein, CopG n=13 Tax=Alteromo... 105 5e-22 UniRef50_A8FVS2 CopG domain protein DNA-binding domain protein n... 104 1e-21 UniRef50_Q082Q8 CopG domain protein DNA-binding domain protein n... 102 3e-21 UniRef50_A6VZB9 Conserved helix-turn-helix protein n=2 Tax=Marin... 92 6e-18 UniRef50_A6VMY2 Putative uncharacterized protein n=1 Tax=Actinob... 83 3e-15 Sequences not found previously or not previously below threshold: UniRef50_A4G373 Putative uncharacterized protein n=1 Tax=Hermini... 39 0.037 CONVERGED! >UniRef50_Q1N6G6 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N6G6_9GAMM Length = 115 Score = 111 bits (277), Expect = 7e-24, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 M + DRTT+D+F + R GRP++NP RD Q+RINKR Q +RD+ +G++R+E+K+ Sbjct: 1 MGVQLEDRTTIDMF-NARAKGRPRSNPYPRDVQIRINKRLQRERDRDKGMRRMEVKIPNA 59 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQG 95 VE L+E A+ + +R+E +E L L S Sbjct: 60 LVEKLDEFAKEQACTRTEAVELGLNAWFEMLESAA 94 >UniRef50_A6T6D0 LexA regulated n=54 Tax=Gammaproteobacteria RepID=A6T6D0_KLEP7 Length = 97 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 89/97 (91%), Positives = 94/97 (96%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKEQTDRTTLDLFA+ERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNA+ Sbjct: 1 MAKEQTDRTTLDLFANERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 AV+ALNELAE+RNMSRS+LIEEMLM QL ALRSQG V Sbjct: 61 AVDALNELAEARNMSRSDLIEEMLMTQLTALRSQGKV 97 >UniRef50_P0AAU8 Uncharacterized protein ybfE n=91 Tax=Gammaproteobacteria RepID=YBFE_ECO57 Length = 97 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE Sbjct: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV Sbjct: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 >UniRef50_A0KIH0 Conserved helix-turn-helix protein n=21 Tax=Gammaproteobacteria RepID=A0KIH0_AERHH Length = 98 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 64/97 (65%), Positives = 81/97 (83%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAK+QTDRTTLDLFA+E+RPGRPKTNPL R+ QL+INKRNQLKRD+ GLKRVELK+ AE Sbjct: 1 MAKQQTDRTTLDLFANEKRPGRPKTNPLPRETQLKINKRNQLKRDRENGLKRVELKVEAE 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV 97 +E LN+LA +N+SR+ELI+ +L QQ+ + + GI Sbjct: 61 LLERLNQLALQQNVSRAELIQSILKQQIESAHAAGIT 97 >UniRef50_B8CPA7 Helix-turn-helix protein, CopG n=13 Tax=Alteromonadales RepID=B8CPA7_SHEPW Length = 102 Score = 105 bits (261), Expect = 5e-22, Method: Composition-based stats. Identities = 52/86 (60%), Positives = 72/86 (83%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE +DRTT+DLFA E+R GRP++NPL RD+QL+INKRNQ++RD+ GLKR+ELK++ + Sbjct: 13 MAKETSDRTTIDLFATEKRRGRPRSNPLPRDQQLKINKRNQIQRDRANGLKRIELKVSQD 72 Query: 61 AVEALNELAESRNMSRSELIEEMLMQ 86 +ALNE A + N+SRS+LIE +L + Sbjct: 73 LYDALNEQAMASNISRSQLIESILQK 98 >UniRef50_A8FVS2 CopG domain protein DNA-binding domain protein n=10 Tax=Gammaproteobacteria RepID=A8FVS2_SHESH Length = 91 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 50/89 (56%), Positives = 72/89 (80%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE +DRTT+DLFA E R GRP++NPL RD+QL++NKRNQ++RD+ GLKR+ELK++ + Sbjct: 1 MAKETSDRTTIDLFATETRRGRPRSNPLPRDQQLKVNKRNQIQRDRANGLKRIELKVSQD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLA 89 +ALN+ A + +SRS+LIE +L +Q+ Sbjct: 61 LYDALNDKALASKISRSQLIELILQEQVT 89 >UniRef50_Q082Q8 CopG domain protein DNA-binding domain protein n=5 Tax=Alteromonadales RepID=Q082Q8_SHEFN Length = 90 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 55/89 (61%), Positives = 74/89 (83%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAKE TDRTT+DLFA E R GRP++NPLSR++QL+INKRNQ++RD+ GLKR+ELK++ + Sbjct: 1 MAKETTDRTTIDLFAAETRRGRPRSNPLSREQQLKINKRNQIQRDRANGLKRIELKVSQD 60 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLA 89 +ALN+ A + N+SRS+LIE +L QQL Sbjct: 61 LYDALNQQALNSNISRSQLIEFILQQQLD 89 >UniRef50_A6VZB9 Conserved helix-turn-helix protein n=2 Tax=Marinomonas RepID=A6VZB9_MARMS Length = 96 Score = 91.7 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE 60 MAK +DR T+DLF + PGRP+T PL+R +QL+INKR Q +++K +GLKR+EL + + Sbjct: 1 MAKASSDRNTIDLFG--KSPGRPRTQPLTRKDQLKINKRAQREKEKAQGLKRLELIIEQD 58 Query: 61 AVEALNELAESRNMSRSELIEEMLMQQLAALRS 93 +E L++L E + R+E + + + + L +S Sbjct: 59 IIEKLDKLCEMNGLKRAEWLTQQINKSLDKPKS 91 >UniRef50_A6VMY2 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMY2_ACTSZ Length = 100 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 1 MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNA 59 MAK+ D TLDLFA ERR GRP++NPLSR++Q+RINKRNQL+RDK GLK +K+ Sbjct: 13 MAKQSADCITLDLFADERRVGRPRSNPLSREQQIRINKRNQLRRDKSSGLKTCRIKITR 71 >UniRef50_A4G373 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G373_HERAR Length = 83 Score = 39.4 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 23 PKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEE 82 P D + I++R Q KRD+ GL +KLN++ V+ L LA+ R + +E+ E Sbjct: 16 PGAADFGSDSAVVIDRREQRKRDQALGLIPFAVKLNSDLVQQLQALAKERGLDLNEVTAE 75 Query: 83 MLMQQLAA 90 +LM+ L A Sbjct: 76 VLMKGLKA 83 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.301 0.127 0.308 Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,802,810 Number of Sequences: 3077464 Number of extensions: 7079085 Number of successful extensions: 28331 Number of sequences better than 1.0e-01: 10 Number of HSP's better than 0.1 without gapping: 20 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28307 Number of HSP's gapped (non-prelim): 21 length of query: 97 length of database: 1,040,396,356 effective HSP length: 66 effective length of query: 31 effective length of database: 837,283,732 effective search space: 25955795692 effective search space used: 25955795692 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.2 bits) S2: 87 (38.2 bits)