15/01/2012 23:03:01 : INFO  : Run start: Sun Jan 15 23:03:00 GMT 2012
15/01/2012 23:03:04 : INFO  : Initialised job
15/01/2012 23:03:05 : INFO  : Renaming log file 'phyre2_20120115_230300.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/phyre_20120115_230300.log'
15/01/2012 23:03:06 : INFO  : Initialised job:
Sequence
>batch____
MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFD
DFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKM
KAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTL
STSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPG
IAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALY
LAFVKRLGAFDAL

15/01/2012 23:03:07 : INFO  : Checked sequence
15/01/2012 23:03:11 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 23:03:12 : INFO  : PSI-BLAST 3 iterations
15/01/2012 23:05:46 : INFO  : PSI-BLAST 5 iterations
15/01/2012 23:10:39 : INFO  : Finished PSI-BLAST
15/01/2012 23:10:41 : INFO  : Running Buildali to generate a3m file
16/01/2012 00:24:47 : INFO  : Converting to HMM
16/01/2012 00:24:53 : INFO  : Calibrating HMM
16/01/2012 00:25:08 : INFO  : Searching HMM database
16/01/2012 00:32:31 : INFO  : Finished buildali
16/01/2012 00:32:33 : INFO  : Predicting secondary structure
16/01/2012 00:32:37 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 00:32:38 : INFO  : Predicting Disordered regions
16/01/2012 00:32:41 : INFO  : Predicted Disorder (Disopred)
16/01/2012 00:32:42 : INFO  : Running memsat_svm check
16/01/2012 00:34:38 : INFO  : Running memsat_svm full
16/01/2012 00:41:42 : INFO  : Predicted Transmembrane (memsat_svm) ID '8340b25b6dc4b157'
16/01/2012 00:41:44 : INFO  : Initialising fold library search
16/01/2012 00:41:46 : INFO  : Initialised search input
16/01/2012 00:41:47 : INFO  : Building Ensemble models
16/01/2012 00:41:50 : INFO  : Building hh.c3fh6F_.model.1.pdb
16/01/2012 00:42:00 : INFO  : Building hh.c2r6gF_.model.2.pdb
16/01/2012 00:42:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/hh.c2r6gF_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/c2r6gF_.2.pdb
16/01/2012 00:42:11 : INFO  : Building hh.c2onkC_.model.3.pdb
16/01/2012 00:42:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/hh.c2onkC_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/c2onkC_.3.pdb
16/01/2012 00:42:22 : INFO  : Building hh.d2onkc1.model.4.pdb
16/01/2012 00:42:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/hh.d2onkc1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/d2onkc1.4.pdb
16/01/2012 00:42:35 : INFO  : Building hh.d2r6gg1.model.5.pdb
16/01/2012 00:42:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/hh.d2r6gg1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/d2r6gg1.5.pdb
16/01/2012 00:42:45 : INFO  : Building hh.d2r6gf2.model.6.pdb
16/01/2012 00:42:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/hh.d2r6gf2.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8340b25b6dc4b157/d2r6gf2.6.pdb
16/01/2012 00:42:57 : INFO  : Building c3fh6F_.1.pdb
16/01/2012 00:43:06 : INFO  : Building c2r6gF_.2.pdb
16/01/2012 00:43:15 : INFO  : Building c2onkC_.3.pdb
16/01/2012 00:43:25 : INFO  : Building d2onkc1.4.pdb
16/01/2012 00:43:34 : INFO  : Building d2r6gg1.5.pdb
16/01/2012 00:43:43 : INFO  : Building d2r6gf2.6.pdb
16/01/2012 00:43:53 : INFO  : Building c3d31D_.7.pdb
16/01/2012 00:44:02 : INFO  : Building d3d31c1.8.pdb
16/01/2012 00:44:11 : INFO  : Building d3dhwa1.9.pdb
16/01/2012 00:44:20 : INFO  : Building d2r6gf1.10.pdb
16/01/2012 00:44:30 : INFO  : Building c1umqA_.11.pdb
16/01/2012 00:44:38 : INFO  : Building d1umqa_.12.pdb
16/01/2012 00:44:47 : INFO  : Building c2hx6A_.13.pdb
16/01/2012 00:44:57 : INFO  : Building d1fipa_.14.pdb
16/01/2012 00:45:06 : INFO  : Building d1ntca_.15.pdb
16/01/2012 00:45:16 : INFO  : Building d1etob_.16.pdb
16/01/2012 00:45:25 : INFO  : Building d1etxa_.17.pdb
16/01/2012 00:45:34 : INFO  : Building c3e7lD_.18.pdb
16/01/2012 00:45:43 : INFO  : Building d1g2ha_.19.pdb
16/01/2012 00:45:52 : INFO  : Building c1ql1A_.20.pdb
16/01/2012 00:47:11 : INFO  : Finished HH model building
16/01/2012 00:47:12 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 00:48:04 : INFO  : html domain output complete ID '8340b25b6dc4b157'
16/01/2012 01:23:35 : INFO  : Run end  : Mon Jan 16 01:23:34 GMT 2012
