BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (186 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C... 386 e-106 UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy... 238 1e-61 UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy... 223 2e-57 UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy... 208 7e-53 UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1... 174 1e-42 UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy... 167 2e-40 UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy... 160 2e-38 UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A... 157 1e-37 UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy... 142 5e-33 UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy... 137 3e-31 UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax... 134 1e-30 UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy... 132 5e-30 UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH 124 1e-27 UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy... 117 1e-25 UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo... 87 2e-16 >UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI Length = 186 Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR Sbjct: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP Sbjct: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 Query: 181 WMRFQF 186 WMRFQF Sbjct: 181 WMRFQF 186 >UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56 Tax=Enterobacteriaceae RepID=D0KD36_PECWW Length = 209 Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 105/159 (66%), Positives = 128/159 (80%) Query: 28 DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87 + W + N++ TW + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR D+ Sbjct: 51 ESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRLDQ 110 Query: 88 KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPL 147 G+WHGLY MAFKDS+NKWEPI GYG+E WRP D++F LGLGFTAG T RDNWNYIP+ Sbjct: 111 DGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYIPI 170 Query: 148 PVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 PVLLPLAS+ Y ++FQ TYIPGTYNNGNV+FAW R+Q Sbjct: 171 PVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209 >UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3 Tax=Enterobacteriaceae RepID=C6C6T1_DICDC Length = 166 Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 99/153 (64%), Positives = 128/153 (83%), Gaps = 1/153 (0%) Query: 35 RENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGL 94 + N+++TW + DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR D G+WHG+ Sbjct: 14 KNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSRLDSDGDWHGI 73 Query: 95 YAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWNYIPLPVLLPL 153 Y MAFKDS+NKWEPI GYG+E W+P+A +++F LGLGFTAGVT RDNWNYIP+PVLLPL Sbjct: 74 YLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWNYIPIPVLLPL 133 Query: 154 ASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 AS+ Y ++FQMTYIPGT+NNGNVYFAW+R+Q Sbjct: 134 ASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166 >UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4 Tax=Enterobacteriaceae RepID=A4WC09_ENT38 Length = 191 Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 98/160 (61%), Positives = 124/160 (77%), Gaps = 5/160 (3%) Query: 28 DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87 +EW T +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE Sbjct: 36 NEWTT----DVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDE 91 Query: 88 KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIP 146 +G+W LYAM FKDS N+W+PI GYGWE+ W +F LGLG TAG+TAR ++ NY+P Sbjct: 92 EGDWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVP 151 Query: 147 LPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 LP++LPL S GY + Q TYIPGTYNNGNV FAW+R+ F Sbjct: 152 LPIILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191 >UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH Length = 206 Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 3/151 (1%) Query: 36 ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLY 95 +N+ TW+ + Y+LY+PAITWH R YD++K D YNE PWG G G R+D GNWH LY Sbjct: 59 DNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGRYRYDSDGNWHALY 117 Query: 96 AMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLAS 155 AM F DS +K EP AGY W+ WRP D LG GFT GVTAR +++YIP P +LPL S Sbjct: 118 AMFFLDSHDKVEPFAGYAWQKIWRPADD--VRLGAGFTVGVTARSDYSYIPFPAILPLVS 175 Query: 156 VGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 V Y + Q TYIPG +NNGNV F W+R+Q Sbjct: 176 VEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206 >UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1 Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR Length = 205 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 34 FRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHG 93 F NI + W HY++Y+P + WH R YD +K YNE PWG G G +D+ NWH Sbjct: 53 FTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKCHFDQNSNWHS 111 Query: 94 LYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPL 153 +YAMAF DS NK +PI GYG++ WRP + F LG GFT +TAR+ + Y+ +P+ LP+ Sbjct: 112 IYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYWYLAIPLPLPI 171 Query: 154 ASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQ 185 AS+ Y ++ Q TY+PGTYNNGNV FAW+R+Q Sbjct: 172 ASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQ 203 >UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21 Tax=Enterobacteriaceae RepID=B1JPR0_YERPY Length = 202 Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 2/162 (1%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 A + W R N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R Sbjct: 43 AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 100 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144 +DE NWH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++Y Sbjct: 101 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 160 Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 IPLP+ LPL S+ Y ++ Q TYIPGTYNNGNV F W+R+QF Sbjct: 161 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202 >UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE Length = 217 Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 A + W R N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R Sbjct: 61 AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 118 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144 +DE NWH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++Y Sbjct: 119 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 178 Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183 IPLP+ LPL S+ Y ++ Q TYIPGTYNNGNV F W+R Sbjct: 179 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217 >UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS Length = 183 Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 4/163 (2%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 ++ D W+ + Q WQQ + ++Y+P +H R AY EK D +NE+ WG G G Sbjct: 24 SDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEKIDSFNEQAWGFGLGRGL 82 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143 D+ G+WHGLYAMAF DS N EPIAGY ++S R EN+ GLGFTA +T+R D + Sbjct: 83 VDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQAGLGFTAFLTSRSDTLH 140 Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 Y P+P +LPLASV Y + TYIPG NGNV F + R+ F Sbjct: 141 YFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183 >UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSV8_9PROT Length = 184 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 8/167 (4%) Query: 25 ANADEWMTTFRENIAQ----TWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGF 80 A A + TTF ++ + TW+Q + ++ +P T+H FAY + K D + + WG G+ Sbjct: 21 AAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLGY 79 Query: 81 GLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR- 139 G SR+D++GNWH LYAM F+DS +K+EPI GYG++ W + H GLG+T VTAR Sbjct: 80 GRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMWG--ERDGLHAGLGYTVFVTARS 137 Query: 140 DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 D NY P P +LP+ASV Y M+Y+PG NGNV F W RF F Sbjct: 138 DIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184 >UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella RepID=Q2KVI8_BORA1 Length = 185 Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 10 FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69 F + L ++ + W + I Q W + + DLY+ +WH R Y K Sbjct: 11 FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69 Query: 70 RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129 +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+ + ENF LG Sbjct: 70 SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127 Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 G+T +TAR D +Y+P P +LPL GY TYIPG NGNV F + R F Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185 >UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK Length = 184 Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MN+ + S + ++ W+ E I+ TW+ +H DLYIP T H R Sbjct: 1 MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYD +K D + E WG G+G SR++ GNW G+Y MAF DS + +P+ GYG + W Sbjct: 60 FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117 Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179 H G+G+TA +T+R D + IP+P +LP+AS+ Y + +Y+PG NGN+ F Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177 Query: 180 AWMRFQF 186 W R F Sbjct: 178 FWSRVGF 184 >UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH Length = 190 Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 89/155 (57%), Gaps = 7/155 (4%) Query: 36 ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLY 95 + I QTW + H D+Y WH R+ Y EK YNE WGGG G S +DEKGNWHGLY Sbjct: 39 QRIHQTWTEG-HDDMYFSGYAWHNRYVYSNEKIKSYNETAWGGGLGKSLFDEKGNWHGLY 97 Query: 96 AMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLAS 155 A+AF DS EP GY + T +++ GLG++ VT+R +++ +P+P LP A+ Sbjct: 98 AIAFLDSHRHLEPAVGYAYLKTAS--VNKDLKAGLGYSVLVTSRVDYDNVPIPGALPWAA 155 Query: 156 VGYGPVTFQMTYIPGT----YNNGNVYFAWMRFQF 186 + Y +T TYIPG+ + NGNV + + Sbjct: 156 LFYKRITIAATYIPGSSREGHENGNVLYMLGKISL 190 >UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO Length = 231 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 9/163 (5%) Query: 30 WMTTFR---ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKT--DRYNERPWGGGFGLSR 84 W++ F+ + Q W + H DLY+ WH RF Y E+ +YNE WGGG G Sbjct: 70 WLSLFKPVCHRLHQVWTE-GHTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGGLGKGF 128 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143 +DEKGNWHGLYA AF DS EP AGY + + F GLGF+ VTAR D ++ Sbjct: 129 FDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVAN--ITKEFKAGLGFSVLVTARPDIFH 186 Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 IP P +P A + Y ++ + YIPG+ NGNV + + F Sbjct: 187 NIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229 >UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX4_THIIN Length = 192 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 8/155 (5%) Query: 37 NIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYA 96 N A + Q DLY TWH Y K N+ WG G+G + GN +YA Sbjct: 41 NAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKHAWGIGWGRHHINADGNEDMVYA 100 Query: 97 MAFKDS-WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLA 154 M F DS WN EP+ GY + W D GLG+T VT+R D ++ IP P+ LP+A Sbjct: 101 MIFSDSHWNA-EPVVGYAHQ--WMFNNDAPVGFGLGYTLAVTSRADIFHNIPFPIALPIA 157 Query: 155 SVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186 S+ +G ++ T+IP NNGNV F + R++F Sbjct: 158 SIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C... 276 2e-73 UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy... 249 4e-65 UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy... 247 1e-64 UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax... 243 2e-63 UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy... 235 4e-61 UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1... 230 2e-59 UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy... 229 4e-59 UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy... 228 7e-59 UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy... 224 1e-57 UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy... 220 2e-56 UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A... 218 6e-56 UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy... 216 2e-55 UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH 216 4e-55 UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy... 211 9e-54 UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo... 185 4e-46 Sequences not found previously or not previously below threshold: UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C... 44 0.002 >UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI Length = 186 Score = 276 bits (707), Expect = 2e-73, Method: Composition-based stats. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR Sbjct: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP Sbjct: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 Query: 181 WMRFQF 186 WMRFQF Sbjct: 181 WMRFQF 186 >UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56 Tax=Enterobacteriaceae RepID=D0KD36_PECWW Length = 209 Score = 249 bits (636), Expect = 4e-65, Method: Composition-based stats. Identities = 105/161 (65%), Positives = 128/161 (79%) Query: 26 NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRW 85 + W + N++ TW + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR Sbjct: 49 QDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRL 108 Query: 86 DEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYI 145 D+ G+WHGLY MAFKDS+NKWEPI GYG+E WRP D++F LGLGFTAG T RDNWNYI Sbjct: 109 DQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYI 168 Query: 146 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 P+PVLLPLAS+ Y ++FQ TYIPGTYNNGNV+FAW R+Q Sbjct: 169 PIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209 >UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK Length = 184 Score = 247 bits (631), Expect = 1e-64, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MN+ + S + ++ W+ E I+ TW+ +H DLYIP T H R Sbjct: 1 MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYD +K D + E WG G+G SR++ GNW G+Y MAF DS + +P+ GYG + W Sbjct: 60 FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117 Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179 H G+G+TA +T+R D + IP+P +LP+AS+ Y + +Y+PG NGN+ F Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177 Query: 180 AWMRFQF 186 W R F Sbjct: 178 FWSRVGF 184 >UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella RepID=Q2KVI8_BORA1 Length = 185 Score = 243 bits (621), Expect = 2e-63, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 10 FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69 F + L ++ + W + I Q W + + DLY+ +WH R Y K Sbjct: 11 FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69 Query: 70 RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129 +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+ + ENF LG Sbjct: 70 SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127 Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 G+T +TAR D +Y+P P +LPL GY TYIPG NGNV F + R F Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185 >UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3 Tax=Enterobacteriaceae RepID=C6C6T1_DICDC Length = 166 Score = 235 bits (600), Expect = 4e-61, Method: Composition-based stats. Identities = 100/160 (62%), Positives = 130/160 (81%), Gaps = 1/160 (0%) Query: 28 DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87 D + + N+++TW + DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR D Sbjct: 7 DGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSRLDS 66 Query: 88 KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWNYIP 146 G+WHG+Y MAFKDS+NKWEPI GYG+E W+P+A +++F LGLGFTAGVT RDNWNYIP Sbjct: 67 DGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWNYIP 126 Query: 147 LPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 +PVLLPLAS+ Y ++FQMTYIPGT+NNGNVYFAW+R+Q Sbjct: 127 IPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166 >UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH Length = 206 Score = 230 bits (586), Expect = 2e-59, Method: Composition-based stats. Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%) Query: 23 VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82 + A + +N+ TW+ + Y+LY+PAITWH R YD++K D YNE PWG G G Sbjct: 46 ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104 Query: 83 SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142 R+D GNWH LYAM F DS +K EP AGY W+ WRP ++ LG GFT GVTAR ++ Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162 Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 +YIP P +LPL SV Y + Q TYIPG +NNGNV F W+R+Q Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206 >UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1 Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR Length = 205 Score = 229 bits (583), Expect = 4e-59, Method: Composition-based stats. Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 32 TTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNW 91 F NI + W HY++Y+P + WH R YD +K YNE PWG G G +D+ NW Sbjct: 51 ERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKCHFDQNSNW 109 Query: 92 HGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLL 151 H +YAMAF DS NK +PI GYG++ WRP + F LG GFT +TAR+ + Y+ +P+ L Sbjct: 110 HSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYWYLAIPLPL 169 Query: 152 PLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQ 185 P+AS+ Y ++ Q TY+PGTYNNGNV FAW+R+Q Sbjct: 170 PIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQ 203 >UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS Length = 183 Score = 228 bits (581), Expect = 7e-59, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%) Query: 12 FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67 V L+ V ++ D W+ + Q WQQ + ++Y+P +H R AY EK Sbjct: 7 SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65 Query: 68 TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127 D +NE+ WG G G D+ G+WHGLYAMAF DS N EPIAGY ++S R EN+ Sbjct: 66 IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123 Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 GLGFTA +T+R D +Y P+P +LPLASV Y + TYIPG NGNV F + R+ F Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183 >UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4 Tax=Enterobacteriaceae RepID=A4WC09_ENT38 Length = 191 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 30 WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89 W + +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G Sbjct: 34 WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93 Query: 90 NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148 +W LYAM FKDS N+W+PI GYGWE+ W +F LGLG TAG+TAR ++ NY+PLP Sbjct: 94 DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153 Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 ++LPL S GY + Q TYIPGTYNNGNV FAW+R+ F Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191 >UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21 Tax=Enterobacteriaceae RepID=B1JPR0_YERPY Length = 202 Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats. Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 2/162 (1%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 A + W R N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R Sbjct: 43 AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 100 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144 +DE NWH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++Y Sbjct: 101 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 160 Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 IPLP+ LPL S+ Y ++ Q TYIPGTYNNGNV F W+R+QF Sbjct: 161 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202 >UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE Length = 217 Score = 218 bits (556), Expect = 6e-56, Method: Composition-based stats. Identities = 85/159 (53%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 A + W R N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R Sbjct: 61 AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 118 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144 +DE NWH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++Y Sbjct: 119 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 178 Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183 IPLP+ LPL S+ Y ++ Q TYIPGTYNNGNV F W+R Sbjct: 179 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217 >UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSV8_9PROT Length = 184 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%) Query: 20 VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79 V + + + + + TW+Q + ++ +P T+H FAY + K D + + WG G Sbjct: 20 VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78 Query: 80 FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139 +G SR+D++GNWH LYAM F+DS +K+EPI GYG++ W + H GLG+T VTAR Sbjct: 79 YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136 Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 D NY P P +LP+ASV Y M+Y+PG NGNV F W RF F Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184 >UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH Length = 190 Score = 216 bits (549), Expect = 4e-55, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%) Query: 13 VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65 I ++ + ++ + I QTW + H D+Y WH R+ Y Sbjct: 9 TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67 Query: 66 EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125 EK YNE WGGG G S +DEKGNWHGLYA+AF DS EP GY + T +++ Sbjct: 68 EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125 Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181 GLG++ VT+R +++ +P+P LP A++ Y +T TYIPG + NGNV + Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185 Query: 182 MRFQF 186 + Sbjct: 186 GKISL 190 >UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO Length = 231 Score = 211 bits (537), Expect = 9e-54, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 9/163 (5%) Query: 30 WMTTF---RENIAQTWQQPEHYDLYIPAITWHARFAYDKEKT--DRYNERPWGGGFGLSR 84 W++ F + Q W + H DLY+ WH RF Y E+ +YNE WGGG G Sbjct: 70 WLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGGLGKGF 128 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143 +DEKGNWHGLYA AF DS EP AGY + + F GLGF+ VTAR D ++ Sbjct: 129 FDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTARPDIFH 186 Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 IP P +P A + Y ++ + YIPG+ NGNV + + F Sbjct: 187 NIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229 >UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX4_THIIN Length = 192 Score = 185 bits (471), Expect = 4e-46, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 15 IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74 + + + N A + Q DLY TWH Y K N+ Sbjct: 19 LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78 Query: 75 PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134 WG G+G + GN +YAM F DS EP+ GY + W D GLG+T Sbjct: 79 AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136 Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186 VT+R D ++ IP P+ LP+AS+ +G ++ T+IP NNGNV F + R++F Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192 >UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD Length = 147 Score = 44.2 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%) Query: 69 DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128 YNE GGG W +G+ + A KDS ++ A G+ L Sbjct: 37 RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85 Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183 G GF T R + +YI P LP +GY VT + TYIP N W R Sbjct: 86 GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144 Query: 184 FQF 186 F Sbjct: 145 INF 147 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C... 252 5e-66 UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy... 234 9e-61 UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy... 232 3e-60 UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax... 226 3e-58 UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy... 222 3e-57 UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1... 219 3e-56 UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy... 216 3e-55 UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH 216 3e-55 UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy... 215 5e-55 UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy... 215 6e-55 UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy... 208 7e-53 UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy... 206 4e-52 UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A... 205 8e-52 UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy... 204 9e-52 UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo... 187 1e-46 UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C... 101 1e-20 Sequences not found previously or not previously below threshold: UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralston... 40 0.040 UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methyli... 39 0.096 CONVERGED! >UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI Length = 186 Score = 252 bits (643), Expect = 5e-66, Method: Composition-based stats. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR Sbjct: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP Sbjct: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180 Query: 181 WMRFQF 186 WMRFQF Sbjct: 181 WMRFQF 186 >UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56 Tax=Enterobacteriaceae RepID=D0KD36_PECWW Length = 209 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 105/161 (65%), Positives = 128/161 (79%) Query: 26 NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRW 85 + W + N++ TW + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR Sbjct: 49 QDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRL 108 Query: 86 DEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYI 145 D+ G+WHGLY MAFKDS+NKWEPI GYG+E WRP D++F LGLGFTAG T RDNWNYI Sbjct: 109 DQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYI 168 Query: 146 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 P+PVLLPLAS+ Y ++FQ TYIPGTYNNGNV+FAW R+Q Sbjct: 169 PIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209 >UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK Length = 184 Score = 232 bits (593), Expect = 3e-60, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%) Query: 1 MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60 MN+ + S + ++ W+ E I+ TW+ +H DLYIP T H R Sbjct: 1 MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59 Query: 61 FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120 FAYD +K D + E WG G+G SR++ GNW G+Y MAF DS + +P+ GYG + W Sbjct: 60 FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117 Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179 H G+G+TA +T+R D + IP+P +LP+AS+ Y + +Y+PG NGN+ F Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177 Query: 180 AWMRFQF 186 W R F Sbjct: 178 FWSRVGF 184 >UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella RepID=Q2KVI8_BORA1 Length = 185 Score = 226 bits (576), Expect = 3e-58, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 10 FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69 F + L ++ + W + I Q W + + DLY+ +WH R Y K Sbjct: 11 FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69 Query: 70 RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129 +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+ + ENF LG Sbjct: 70 SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127 Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 G+T +TAR D +Y+P P +LPL GY TYIPG NGNV F + R F Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185 >UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3 Tax=Enterobacteriaceae RepID=C6C6T1_DICDC Length = 166 Score = 222 bits (567), Expect = 3e-57, Method: Composition-based stats. Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 1/163 (0%) Query: 25 ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84 D + + N+++TW + DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR Sbjct: 4 DGQDGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSR 63 Query: 85 WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWN 143 D G+WHG+Y MAFKDS+NKWEPI GYG+E W+P+A +++F LGLGFTAGVT RDNWN Sbjct: 64 LDSDGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWN 123 Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 YIP+PVLLPLAS+ Y ++FQMTYIPGT+NNGNVYFAW+R+Q Sbjct: 124 YIPIPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166 >UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH Length = 206 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%) Query: 23 VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82 + A + +N+ TW+ + Y+LY+PAITWH R YD++K D YNE PWG G G Sbjct: 46 ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104 Query: 83 SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142 R+D GNWH LYAM F DS +K EP AGY W+ WRP ++ LG GFT GVTAR ++ Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162 Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 +YIP P +LPL SV Y + Q TYIPG +NNGNV F W+R+Q Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206 >UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4 Tax=Enterobacteriaceae RepID=A4WC09_ENT38 Length = 191 Score = 216 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%) Query: 30 WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89 W + +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G Sbjct: 34 WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93 Query: 90 NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148 +W LYAM FKDS N+W+PI GYGWE+ W +F LGLG TAG+TAR ++ NY+PLP Sbjct: 94 DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153 Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 ++LPL S GY + Q TYIPGTYNNGNV FAW+R+ F Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191 >UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH Length = 190 Score = 216 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%) Query: 13 VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65 I ++ + ++ + I QTW + H D+Y WH R+ Y Sbjct: 9 TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67 Query: 66 EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125 EK YNE WGGG G S +DEKGNWHGLYA+AF DS EP GY + T +++ Sbjct: 68 EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125 Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181 GLG++ VT+R +++ +P+P LP A++ Y +T TYIPG + NGNV + Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185 Query: 182 MRFQF 186 + Sbjct: 186 GKISL 190 >UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS Length = 183 Score = 215 bits (548), Expect = 5e-55, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%) Query: 12 FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67 V L+ V ++ D W+ + Q WQQ + ++Y+P +H R AY EK Sbjct: 7 SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65 Query: 68 TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127 D +NE+ WG G G D+ G+WHGLYAMAF DS N EPIAGY ++S R EN+ Sbjct: 66 IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123 Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 GLGFTA +T+R D +Y P+P +LPLASV Y + TYIPG NGNV F + R+ F Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183 >UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1 Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR Length = 205 Score = 215 bits (548), Expect = 6e-55, Method: Composition-based stats. Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 1/163 (0%) Query: 24 FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLS 83 + F NI + W HY++Y+P + WH R YD +K YNE PWG G G Sbjct: 43 SSKPFSLGERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKC 101 Query: 84 RWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWN 143 +D+ NWH +YAMAF DS NK +PI GYG++ WRP + F LG GFT +TAR+ + Sbjct: 102 HFDQNSNWHSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYW 161 Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 Y+ +P+ LP+AS+ Y ++ Q TY+PGTYNNGNV FAW+R+Q+ Sbjct: 162 YLAIPLPLPIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQW 204 >UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSV8_9PROT Length = 184 Score = 208 bits (529), Expect = 7e-53, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%) Query: 20 VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79 V + + + + + TW+Q + ++ +P T+H FAY + K D + + WG G Sbjct: 20 VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78 Query: 80 FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139 +G SR+D++GNWH LYAM F+DS +K+EPI GYG++ W + H GLG+T VTAR Sbjct: 79 YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136 Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 D NY P P +LP+ASV Y M+Y+PG NGNV F W RF F Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184 >UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21 Tax=Enterobacteriaceae RepID=B1JPR0_YERPY Length = 202 Score = 206 bits (523), Expect = 4e-52, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 31 MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90 N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R+DE N Sbjct: 48 WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 106 Query: 91 WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150 WH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++YIPLP+ Sbjct: 107 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 166 Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 LPL S+ Y ++ Q TYIPGTYNNGNV F W+R+QF Sbjct: 167 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202 >UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE Length = 217 Score = 205 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 31 MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90 N++ W P H +LYIP TWH R+ YD EK YNERPWG G+G R+DE N Sbjct: 66 WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 124 Query: 91 WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150 WH +YAMAF DS N+ EPI GYG++ W P E + G GFTA +TAR ++YIPLP+ Sbjct: 125 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 184 Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183 LPL S+ Y ++ Q TYIPGTYNNGNV F W+R Sbjct: 185 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217 >UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO Length = 231 Score = 204 bits (520), Expect = 9e-52, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 22 KVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD--RYNERPWGGG 79 K + Q W + H DLY+ WH RF Y E+ +YNE WGGG Sbjct: 65 KGCKYWLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGG 123 Query: 80 FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139 G +DEKGNWHGLYA AF DS EP AGY + + F GLGF+ VTAR Sbjct: 124 LGKGFFDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTAR 181 Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186 D ++ IP P +P A + Y ++ + YIPG+ NGNV + + F Sbjct: 182 PDIFHNIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229 >UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX4_THIIN Length = 192 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 15 IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74 + + + N A + Q DLY TWH Y K N+ Sbjct: 19 LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78 Query: 75 PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134 WG G+G + GN +YAM F DS EP+ GY + W D GLG+T Sbjct: 79 AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136 Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186 VT+R D ++ IP P+ LP+AS+ +G ++ T+IP NNGNV F + R++F Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192 >UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD Length = 147 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%) Query: 69 DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128 YNE GGG W +G+ + A KDS ++ A G+ L Sbjct: 37 RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85 Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183 G GF T R + +YI P LP +GY VT + TYIP N W R Sbjct: 86 GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144 Query: 184 FQF 186 F Sbjct: 145 INF 147 >UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralstonia phage RSL1 RepID=B2ZXN9_9CAUD Length = 333 Score = 40.0 bits (92), Expect = 0.040, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 13/129 (10%) Query: 62 AYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPL 121 + + N G GFG + S N+ +A G+ ++ Sbjct: 214 TFRPTGNRKLNAVNPGSGFGKR---SAMAGWSVPVRTRTRSTNR-GYMAYGGY--RFKFG 267 Query: 122 ADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIP----GTYNNGNV 177 ++ ++ + AG N + + + LP VGY V+ + + P G V Sbjct: 268 DEKGWNANVALKAGYLHGSNRHGL---MALPTVGVGYKNVSLEFSAFPYHTDDKGGKGIV 324 Query: 178 YFAWMRFQF 186 W+R+QF Sbjct: 325 VATWLRYQF 333 >UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNF9_METPP Length = 172 Score = 38.8 bits (89), Expect = 0.096, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 70 RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129 YNE G G + NW +K+S K W L Sbjct: 56 GYNETNTGIGI---EYGIDRNWTLAVG-TYKNSVFKRSTYIQGVWTPDVTTYNFGELSLK 111 Query: 130 LGFTAGVTA--RDNWNYIPLPVLLPLASVGYGPVTFQMTYIP 169 G GV D P +LP+ S Y V +TYIP Sbjct: 112 AGLAVGVVNGYPDQMQGGFFPAVLPVLSAEYKRVGVNLTYIP 153 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.138 0.433 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,342,927,235 Number of Sequences: 3077464 Number of extensions: 62452693 Number of successful extensions: 127215 Number of sequences better than 1.0e-01: 20 Number of HSP's better than 0.1 without gapping: 46 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 127092 Number of HSP's gapped (non-prelim): 53 length of query: 186 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 65 effective length of database: 668,023,212 effective search space: 43421508780 effective search space used: 43421508780 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 89 (38.9 bits)