BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (186 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C...   252   5e-66
UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy...   234   9e-61
UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy...   232   3e-60
UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax...   226   3e-58
UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy...   222   3e-57
UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1...   219   3e-56
UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy...   216   3e-55
UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH             216   3e-55
UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy...   215   5e-55
UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy...   215   6e-55
UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy...   208   7e-53
UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy...   206   4e-52
UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A...   205   8e-52
UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy...   204   9e-52
UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo...   187   1e-46
UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C...   101   1e-20
UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralston...    40   0.040
UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methyli...    39   0.096

>UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI
          Length = 186

 Score =  252 bits (643), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
Sbjct: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
Sbjct: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120

Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180
           LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180

Query: 181 WMRFQF 186
           WMRFQF
Sbjct: 181 WMRFQF 186


>UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56
           Tax=Enterobacteriaceae RepID=D0KD36_PECWW
          Length = 209

 Score =  234 bits (598), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/161 (65%), Positives = 128/161 (79%)

Query: 26  NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRW 85
             + W    + N++ TW   + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR 
Sbjct: 49  QDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRL 108

Query: 86  DEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYI 145
           D+ G+WHGLY MAFKDS+NKWEPI GYG+E  WRP  D++F LGLGFTAG T RDNWNYI
Sbjct: 109 DQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYI 168

Query: 146 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           P+PVLLPLAS+ Y  ++FQ TYIPGTYNNGNV+FAW R+Q 
Sbjct: 169 PIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209


>UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK
          Length = 184

 Score =  232 bits (593), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MN+   +   S   +  ++          W+    E I+ TW+  +H DLYIP  T H R
Sbjct: 1   MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYD +K D + E  WG G+G SR++  GNW G+Y MAF DS +  +P+ GYG +  W  
Sbjct: 60  FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117

Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179
                 H G+G+TA +T+R D +  IP+P +LP+AS+ Y   +   +Y+PG   NGN+ F
Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177

Query: 180 AWMRFQF 186
            W R  F
Sbjct: 178 FWSRVGF 184


>UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella
           RepID=Q2KVI8_BORA1
          Length = 185

 Score =  226 bits (576), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 10  FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69
           F    + L ++     +   W  +    I Q W +  + DLY+   +WH R  Y   K  
Sbjct: 11  FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+    +    ENF LG
Sbjct: 70  SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127

Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            G+T  +TAR D  +Y+P P +LPL   GY       TYIPG   NGNV F + R  F
Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185


>UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3
           Tax=Enterobacteriaceae RepID=C6C6T1_DICDC
          Length = 166

 Score =  222 bits (567), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
              D +    + N+++TW   +  DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR
Sbjct: 4   DGQDGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSR 63

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWN 143
            D  G+WHG+Y MAFKDS+NKWEPI GYG+E  W+P+A +++F LGLGFTAGVT RDNWN
Sbjct: 64  LDSDGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWN 123

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           YIP+PVLLPLAS+ Y  ++FQMTYIPGT+NNGNVYFAW+R+Q 
Sbjct: 124 YIPIPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166


>UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH
          Length = 206

 Score =  219 bits (559), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 23  VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82
             + A  +     +N+  TW+  + Y+LY+PAITWH R  YD++K D YNE PWG G G 
Sbjct: 46  ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104

Query: 83  SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142
            R+D  GNWH LYAM F DS +K EP AGY W+  WRP   ++  LG GFT GVTAR ++
Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162

Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           +YIP P +LPL SV Y  +  Q TYIPG +NNGNV F W+R+Q 
Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206


>UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4
           Tax=Enterobacteriaceae RepID=A4WC09_ENT38
          Length = 191

 Score =  216 bits (550), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
           W   +  +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G
Sbjct: 34  WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148
           +W  LYAM FKDS N+W+PI GYGWE+ W      +F LGLG TAG+TAR ++ NY+PLP
Sbjct: 94  DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153

Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           ++LPL S GY  +  Q TYIPGTYNNGNV FAW+R+ F
Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191


>UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH
          Length = 190

 Score =  216 bits (550), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 13  VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65
             I  ++            +    ++    + I QTW +  H D+Y     WH R+ Y  
Sbjct: 9   TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67

Query: 66  EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125
           EK   YNE  WGGG G S +DEKGNWHGLYA+AF DS    EP  GY +  T     +++
Sbjct: 68  EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125

Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181
              GLG++  VT+R +++ +P+P  LP A++ Y  +T   TYIPG     + NGNV +  
Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185

Query: 182 MRFQF 186
            +   
Sbjct: 186 GKISL 190


>UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS
          Length = 183

 Score =  215 bits (548), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%)

Query: 12  FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67
            V   L+    V     ++ D W+      + Q WQQ +  ++Y+P   +H R AY  EK
Sbjct: 7   SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65

Query: 68  TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127
            D +NE+ WG G G    D+ G+WHGLYAMAF DS N  EPIAGY ++S  R    EN+ 
Sbjct: 66  IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123

Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            GLGFTA +T+R D  +Y P+P +LPLASV Y  +    TYIPG   NGNV F + R+ F
Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183


>UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1
           Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR
          Length = 205

 Score =  215 bits (548), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 24  FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLS 83
            +        F  NI + W    HY++Y+P + WH R  YD +K   YNE PWG G G  
Sbjct: 43  SSKPFSLGERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKC 101

Query: 84  RWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWN 143
            +D+  NWH +YAMAF DS NK +PI GYG++  WRP   + F LG GFT  +TAR+ + 
Sbjct: 102 HFDQNSNWHSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYW 161

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           Y+ +P+ LP+AS+ Y  ++ Q TY+PGTYNNGNV FAW+R+Q+
Sbjct: 162 YLAIPLPLPIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQW 204


>UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RSV8_9PROT
          Length = 184

 Score =  208 bits (529), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 20  VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79
           V     +   +  +  + +  TW+Q +  ++ +P  T+H  FAY + K D + +  WG G
Sbjct: 20  VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
           +G SR+D++GNWH LYAM F+DS +K+EPI GYG++  W     +  H GLG+T  VTAR
Sbjct: 79  YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D  NY P P +LP+ASV Y      M+Y+PG   NGNV F W RF F
Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184


>UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21
           Tax=Enterobacteriaceae RepID=B1JPR0_YERPY
          Length = 202

 Score =  206 bits (523), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 31  MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90
                 N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  N
Sbjct: 48  WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 106

Query: 91  WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150
           WH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+ 
Sbjct: 107 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 166

Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R+QF
Sbjct: 167 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202


>UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE
          Length = 217

 Score =  205 bits (521), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 31  MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90
                 N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  N
Sbjct: 66  WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 124

Query: 91  WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150
           WH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+ 
Sbjct: 125 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 184

Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183
           LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R
Sbjct: 185 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217


>UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP
           n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO
          Length = 231

 Score =  204 bits (520), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 22  KVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD--RYNERPWGGG 79
           K               + Q W +  H DLY+    WH RF Y  E+    +YNE  WGGG
Sbjct: 65  KGCKYWLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGG 123

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
            G   +DEKGNWHGLYA AF DS    EP AGY +         + F  GLGF+  VTAR
Sbjct: 124 LGKGFFDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTAR 181

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D ++ IP P  +P A + Y  ++ +  YIPG+  NGNV +    + F
Sbjct: 182 PDIFHNIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229


>UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12
           RepID=C7HWX4_THIIN
          Length = 192

 Score =  187 bits (476), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 15  IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74
           +   +   +             N A +  Q    DLY    TWH    Y   K    N+ 
Sbjct: 19  LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78

Query: 75  PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134
            WG G+G    +  GN   +YAM F DS    EP+ GY  +  W    D     GLG+T 
Sbjct: 79  AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136

Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186
            VT+R D ++ IP P+ LP+AS+ +G ++   T+IP      NNGNV F + R++F
Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192


>UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD
          Length = 147

 Score =  101 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 69  DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128
             YNE   GGG     W  +G+   +   A KDS ++    A  G+             L
Sbjct: 37  RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85

Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183
           G GF    T R     + +YI  P  LP   +GY  VT + TYIP    N       W R
Sbjct: 86  GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144

Query: 184 FQF 186
             F
Sbjct: 145 INF 147


>UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralstonia phage RSL1
           RepID=B2ZXN9_9CAUD
          Length = 333

 Score = 40.0 bits (92), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 62  AYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPL 121
            +      + N    G GFG            +       S N+   +A  G+   ++  
Sbjct: 214 TFRPTGNRKLNAVNPGSGFGKR---SAMAGWSVPVRTRTRSTNR-GYMAYGGY--RFKFG 267

Query: 122 ADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIP----GTYNNGNV 177
            ++ ++  +   AG     N + +   + LP   VGY  V+ + +  P         G V
Sbjct: 268 DEKGWNANVALKAGYLHGSNRHGL---MALPTVGVGYKNVSLEFSAFPYHTDDKGGKGIV 324

Query: 178 YFAWMRFQF 186
              W+R+QF
Sbjct: 325 VATWLRYQF 333


>UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum
           PM1 RepID=A2SNF9_METPP
          Length = 172

 Score = 38.8 bits (89), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            YNE   G G     +    NW       +K+S  K        W             L 
Sbjct: 56  GYNETNTGIGI---EYGIDRNWTLAVG-TYKNSVFKRSTYIQGVWTPDVTTYNFGELSLK 111

Query: 130 LGFTAGVTA--RDNWNYIPLPVLLPLASVGYGPVTFQMTYIP 169
            G   GV     D       P +LP+ S  Y  V   +TYIP
Sbjct: 112 AGLAVGVVNGYPDQMQGGFFPAVLPVLSAEYKRVGVNLTYIP 153


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C...   252   6e-66
UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy...   236   3e-61
UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy...   233   2e-60
UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax...   227   2e-58
UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy...   225   6e-58
UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy...   222   5e-57
UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1...   221   9e-57
UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH             218   7e-56
UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy...   217   2e-55
UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy...   215   5e-55
UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy...   212   5e-54
UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy...   209   3e-53
UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy...   208   7e-53
UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A...   207   1e-52
UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo...   188   8e-47
UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C...   102   9e-21

Sequences not found previously or not previously below threshold:

UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralston...    40   0.028
UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methyli...    39   0.079


CONVERGED!
>UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI
          Length = 186

 Score =  252 bits (643), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
Sbjct: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
Sbjct: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120

Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180
           LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180

Query: 181 WMRFQF 186
           WMRFQF
Sbjct: 181 WMRFQF 186


>UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56
           Tax=Enterobacteriaceae RepID=D0KD36_PECWW
          Length = 209

 Score =  236 bits (602), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 105/168 (62%), Positives = 129/168 (76%)

Query: 19  SVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGG 78
           +        + W    + N++ TW   + +D+YIPAITWH R+ YDKEKTD+YNERPWG 
Sbjct: 42  ADSTSNKQDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGA 101

Query: 79  GFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTA 138
           G+G+SR D+ G+WHGLY MAFKDS+NKWEPI GYG+E  WRP  D++F LGLGFTAG T 
Sbjct: 102 GYGVSRLDQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTM 161

Query: 139 RDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           RDNWNYIP+PVLLPLAS+ Y  ++FQ TYIPGTYNNGNV+FAW R+Q 
Sbjct: 162 RDNWNYIPIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209


>UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK
          Length = 184

 Score =  233 bits (595), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MN+   +   S   +  ++          W+    E I+ TW+  +H DLYIP  T H R
Sbjct: 1   MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYD +K D + E  WG G+G SR++  GNW G+Y MAF DS +  +P+ GYG +  W  
Sbjct: 60  FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117

Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179
                 H G+G+TA +T+R D +  IP+P +LP+AS+ Y   +   +Y+PG   NGN+ F
Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177

Query: 180 AWMRFQF 186
            W R  F
Sbjct: 178 FWSRVGF 184


>UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella
           RepID=Q2KVI8_BORA1
          Length = 185

 Score =  227 bits (578), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 10  FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69
           F    + L ++     +   W  +    I Q W +  + DLY+   +WH R  Y   K  
Sbjct: 11  FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+    +    ENF LG
Sbjct: 70  SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127

Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            G+T  +TAR D  +Y+P P +LPL   GY       TYIPG   NGNV F + R  F
Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185


>UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3
           Tax=Enterobacteriaceae RepID=C6C6T1_DICDC
          Length = 166

 Score =  225 bits (573), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
              D +    + N+++TW   +  DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR
Sbjct: 4   DGQDGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSR 63

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWN 143
            D  G+WHG+Y MAFKDS+NKWEPI GYG+E  W+P+A +++F LGLGFTAGVT RDNWN
Sbjct: 64  LDSDGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWN 123

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           YIP+PVLLPLAS+ Y  ++FQMTYIPGT+NNGNVYFAW+R+Q 
Sbjct: 124 YIPIPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166


>UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1
           Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR
          Length = 205

 Score =  222 bits (565), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 24  FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLS 83
            +        F  NI + W    HY++Y+P + WH R  YD +K   YNE PWG G G  
Sbjct: 43  SSKPFSLGERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKC 101

Query: 84  RWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWN 143
            +D+  NWH +YAMAF DS NK +PI GYG++  WRP   + F LG GFT  +TAR+ + 
Sbjct: 102 HFDQNSNWHSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYW 161

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           Y+ +P+ LP+AS+ Y  ++ Q TY+PGTYNNGNV FAW+R+Q+
Sbjct: 162 YLAIPLPLPIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQW 204


>UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH
          Length = 206

 Score =  221 bits (563), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 23  VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82
             + A  +     +N+  TW+  + Y+LY+PAITWH R  YD++K D YNE PWG G G 
Sbjct: 46  ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104

Query: 83  SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142
            R+D  GNWH LYAM F DS +K EP AGY W+  WRP   ++  LG GFT GVTAR ++
Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162

Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           +YIP P +LPL SV Y  +  Q TYIPG +NNGNV F W+R+Q 
Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206


>UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH
          Length = 190

 Score =  218 bits (556), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 13  VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65
             I  ++            +    ++    + I QTW +  H D+Y     WH R+ Y  
Sbjct: 9   TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67

Query: 66  EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125
           EK   YNE  WGGG G S +DEKGNWHGLYA+AF DS    EP  GY +  T     +++
Sbjct: 68  EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125

Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181
              GLG++  VT+R +++ +P+P  LP A++ Y  +T   TYIPG     + NGNV +  
Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185

Query: 182 MRFQF 186
            +   
Sbjct: 186 GKISL 190


>UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4
           Tax=Enterobacteriaceae RepID=A4WC09_ENT38
          Length = 191

 Score =  217 bits (553), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
           W   +  +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G
Sbjct: 34  WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148
           +W  LYAM FKDS N+W+PI GYGWE+ W      +F LGLG TAG+TAR ++ NY+PLP
Sbjct: 94  DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153

Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           ++LPL S GY  +  Q TYIPGTYNNGNV FAW+R+ F
Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191


>UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS
          Length = 183

 Score =  215 bits (548), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%)

Query: 12  FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67
            V   L+    V     ++ D W+      + Q WQQ +  ++Y+P   +H R AY  EK
Sbjct: 7   SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65

Query: 68  TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127
            D +NE+ WG G G    D+ G+WHGLYAMAF DS N  EPIAGY ++S  R    EN+ 
Sbjct: 66  IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123

Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            GLGFTA +T+R D  +Y P+P +LPLASV Y  +    TYIPG   NGNV F + R+ F
Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183


>UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP
           n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO
          Length = 231

 Score =  212 bits (540), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 22  KVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD--RYNERPWGGG 79
           K               + Q W +  H DLY+    WH RF Y  E+    +YNE  WGGG
Sbjct: 65  KGCKYWLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGG 123

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
            G   +DEKGNWHGLYA AF DS    EP AGY +         + F  GLGF+  VTAR
Sbjct: 124 LGKGFFDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTAR 181

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D ++ IP P  +P A + Y  ++ +  YIPG+  NGNV +    + F
Sbjct: 182 PDIFHNIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229


>UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RSV8_9PROT
          Length = 184

 Score =  209 bits (533), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 20  VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79
           V     +   +  +  + +  TW+Q +  ++ +P  T+H  FAY + K D + +  WG G
Sbjct: 20  VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
           +G SR+D++GNWH LYAM F+DS +K+EPI GYG++  W     +  H GLG+T  VTAR
Sbjct: 79  YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D  NY P P +LP+ASV Y      M+Y+PG   NGNV F W RF F
Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184


>UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21
           Tax=Enterobacteriaceae RepID=B1JPR0_YERPY
          Length = 202

 Score =  208 bits (530), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
                  N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  
Sbjct: 47  LWQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDN 105

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPV 149
           NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+
Sbjct: 106 NWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPL 165

Query: 150 LLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R+QF
Sbjct: 166 PLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202


>UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE
          Length = 217

 Score =  207 bits (528), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/154 (53%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
                  N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  
Sbjct: 65  LWQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDN 123

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPV 149
           NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+
Sbjct: 124 NWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPL 183

Query: 150 LLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183
            LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R
Sbjct: 184 PLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217


>UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12
           RepID=C7HWX4_THIIN
          Length = 192

 Score =  188 bits (477), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 15  IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74
           +   +   +             N A +  Q    DLY    TWH    Y   K    N+ 
Sbjct: 19  LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78

Query: 75  PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134
            WG G+G    +  GN   +YAM F DS    EP+ GY  +  W    D     GLG+T 
Sbjct: 79  AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136

Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186
            VT+R D ++ IP P+ LP+AS+ +G ++   T+IP      NNGNV F + R++F
Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192


>UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD
          Length = 147

 Score =  102 bits (253), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 69  DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128
             YNE   GGG     W  +G+   +   A KDS ++    A  G+             L
Sbjct: 37  RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85

Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183
           G GF    T R     + +YI  P  LP   +GY  VT + TYIP    N       W R
Sbjct: 86  GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144

Query: 184 FQF 186
             F
Sbjct: 145 INF 147


>UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralstonia phage RSL1
           RepID=B2ZXN9_9CAUD
          Length = 333

 Score = 40.4 bits (93), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 62  AYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPL 121
            +      + N    G GFG            +       S N+   +A  G+   ++  
Sbjct: 214 TFRPTGNRKLNAVNPGSGFGKR---SAMAGWSVPVRTRTRSTNR-GYMAYGGY--RFKFG 267

Query: 122 ADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIP----GTYNNGNV 177
            ++ ++  +   AG     N + +   + LP   VGY  V+ + +  P         G V
Sbjct: 268 DEKGWNANVALKAGYLHGSNRHGL---MALPTVGVGYKNVSLEFSAFPYHTDDKGGKGIV 324

Query: 178 YFAWMRFQF 186
              W+R+QF
Sbjct: 325 VATWLRYQF 333


>UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum
           PM1 RepID=A2SNF9_METPP
          Length = 172

 Score = 38.8 bits (89), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            YNE   G G     +    NW       +K+S  K        W             L 
Sbjct: 56  GYNETNTGIGI---EYGIDRNWTLAVG-TYKNSVFKRSTYIQGVWTPDVTTYNFGELSLK 111

Query: 130 LGFTAGVTA--RDNWNYIPLPVLLPLASVGYGPVTFQMTYIP 169
            G   GV     D       P +LP+ S  Y  V   +TYIP
Sbjct: 112 AGLAVGVVNGYPDQMQGGFFPAVLPVLSAEYKRVGVNLTYIP 153


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.314    0.138    0.429 

Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 879,358,273
Number of Sequences: 3077464
Number of extensions: 40766943
Number of successful extensions: 90385
Number of sequences better than 1.0e-01: 20
Number of HSP's better than  0.1 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 90286
Number of HSP's gapped (non-prelim): 42
length of query: 186
length of database: 1,040,396,356
effective HSP length: 121
effective length of query: 65
effective length of database: 668,023,212
effective search space: 43421508780
effective search space used: 43421508780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 89 (38.9 bits)
