BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (186 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C...   386   e-106
UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy...   238   1e-61
UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy...   223   2e-57
UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy...   208   7e-53
UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1...   174   1e-42
UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy...   167   2e-40
UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy...   160   2e-38
UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A...   157   1e-37
UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy...   142   5e-33
UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy...   137   3e-31
UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax...   134   1e-30
UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy...   132   5e-30
UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH             124   1e-27
UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy...   117   1e-25
UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo...    87   2e-16

>UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI
          Length = 186

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
Sbjct: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
Sbjct: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120

Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180
           LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180

Query: 181 WMRFQF 186
           WMRFQF
Sbjct: 181 WMRFQF 186


>UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56
           Tax=Enterobacteriaceae RepID=D0KD36_PECWW
          Length = 209

 Score =  238 bits (606), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 128/159 (80%)

Query: 28  DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87
           + W    + N++ TW   + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR D+
Sbjct: 51  ESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRLDQ 110

Query: 88  KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPL 147
            G+WHGLY MAFKDS+NKWEPI GYG+E  WRP  D++F LGLGFTAG T RDNWNYIP+
Sbjct: 111 DGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYIPI 170

Query: 148 PVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           PVLLPLAS+ Y  ++FQ TYIPGTYNNGNV+FAW R+Q 
Sbjct: 171 PVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209


>UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3
           Tax=Enterobacteriaceae RepID=C6C6T1_DICDC
          Length = 166

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 128/153 (83%), Gaps = 1/153 (0%)

Query: 35  RENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGL 94
           + N+++TW   +  DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR D  G+WHG+
Sbjct: 14  KNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSRLDSDGDWHGI 73

Query: 95  YAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWNYIPLPVLLPL 153
           Y MAFKDS+NKWEPI GYG+E  W+P+A +++F LGLGFTAGVT RDNWNYIP+PVLLPL
Sbjct: 74  YLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWNYIPIPVLLPL 133

Query: 154 ASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           AS+ Y  ++FQMTYIPGT+NNGNVYFAW+R+Q 
Sbjct: 134 ASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166


>UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4
           Tax=Enterobacteriaceae RepID=A4WC09_ENT38
          Length = 191

 Score =  208 bits (530), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 124/160 (77%), Gaps = 5/160 (3%)

Query: 28  DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87
           +EW T    +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE
Sbjct: 36  NEWTT----DVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDE 91

Query: 88  KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIP 146
           +G+W  LYAM FKDS N+W+PI GYGWE+ W      +F LGLG TAG+TAR ++ NY+P
Sbjct: 92  EGDWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVP 151

Query: 147 LPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           LP++LPL S GY  +  Q TYIPGTYNNGNV FAW+R+ F
Sbjct: 152 LPIILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191


>UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH
          Length = 206

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 3/151 (1%)

Query: 36  ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLY 95
           +N+  TW+  + Y+LY+PAITWH R  YD++K D YNE PWG G G  R+D  GNWH LY
Sbjct: 59  DNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGRYRYDSDGNWHALY 117

Query: 96  AMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLAS 155
           AM F DS +K EP AGY W+  WRP  D    LG GFT GVTAR +++YIP P +LPL S
Sbjct: 118 AMFFLDSHDKVEPFAGYAWQKIWRPADD--VRLGAGFTVGVTARSDYSYIPFPAILPLVS 175

Query: 156 VGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           V Y  +  Q TYIPG +NNGNV F W+R+Q 
Sbjct: 176 VEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206


>UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1
           Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR
          Length = 205

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 1/152 (0%)

Query: 34  FRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHG 93
           F  NI + W    HY++Y+P + WH R  YD +K   YNE PWG G G   +D+  NWH 
Sbjct: 53  FTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKCHFDQNSNWHS 111

Query: 94  LYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPL 153
           +YAMAF DS NK +PI GYG++  WRP   + F LG GFT  +TAR+ + Y+ +P+ LP+
Sbjct: 112 IYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYWYLAIPLPLPI 171

Query: 154 ASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQ 185
           AS+ Y  ++ Q TY+PGTYNNGNV FAW+R+Q
Sbjct: 172 ASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQ 203


>UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21
           Tax=Enterobacteriaceae RepID=B1JPR0_YERPY
          Length = 202

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
           A  + W    R N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R
Sbjct: 43  AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 100

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144
           +DE  NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++Y
Sbjct: 101 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 160

Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           IPLP+ LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R+QF
Sbjct: 161 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202


>UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE
          Length = 217

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
           A  + W    R N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R
Sbjct: 61  AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 118

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144
           +DE  NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++Y
Sbjct: 119 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 178

Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183
           IPLP+ LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R
Sbjct: 179 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217


>UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS
          Length = 183

 Score =  142 bits (358), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 4/163 (2%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
           ++ D W+      + Q WQQ +  ++Y+P   +H R AY  EK D +NE+ WG G G   
Sbjct: 24  SDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEKIDSFNEQAWGFGLGRGL 82

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143
            D+ G+WHGLYAMAF DS N  EPIAGY ++S  R    EN+  GLGFTA +T+R D  +
Sbjct: 83  VDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQAGLGFTAFLTSRSDTLH 140

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           Y P+P +LPLASV Y  +    TYIPG   NGNV F + R+ F
Sbjct: 141 YFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183


>UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RSV8_9PROT
          Length = 184

 Score =  137 bits (344), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 8/167 (4%)

Query: 25  ANADEWMTTFRENIAQ----TWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGF 80
           A A +  TTF  ++ +    TW+Q +  ++ +P  T+H  FAY + K D + +  WG G+
Sbjct: 21  AAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLGY 79

Query: 81  GLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR- 139
           G SR+D++GNWH LYAM F+DS +K+EPI GYG++  W     +  H GLG+T  VTAR 
Sbjct: 80  GRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMWG--ERDGLHAGLGYTVFVTARS 137

Query: 140 DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           D  NY P P +LP+ASV Y      M+Y+PG   NGNV F W RF F
Sbjct: 138 DIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184


>UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella
           RepID=Q2KVI8_BORA1
          Length = 185

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 10  FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69
           F    + L ++     +   W  +    I Q W +  + DLY+   +WH R  Y   K  
Sbjct: 11  FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+    +    ENF LG
Sbjct: 70  SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127

Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            G+T  +TAR D  +Y+P P +LPL   GY       TYIPG   NGNV F + R  F
Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185


>UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK
          Length = 184

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MN+   +   S   +  ++          W+    E I+ TW+  +H DLYIP  T H R
Sbjct: 1   MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYD +K D + E  WG G+G SR++  GNW G+Y MAF DS +  +P+ GYG +  W  
Sbjct: 60  FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117

Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179
                 H G+G+TA +T+R D +  IP+P +LP+AS+ Y   +   +Y+PG   NGN+ F
Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177

Query: 180 AWMRFQF 186
            W R  F
Sbjct: 178 FWSRVGF 184


>UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH
          Length = 190

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 89/155 (57%), Gaps = 7/155 (4%)

Query: 36  ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLY 95
           + I QTW +  H D+Y     WH R+ Y  EK   YNE  WGGG G S +DEKGNWHGLY
Sbjct: 39  QRIHQTWTEG-HDDMYFSGYAWHNRYVYSNEKIKSYNETAWGGGLGKSLFDEKGNWHGLY 97

Query: 96  AMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLAS 155
           A+AF DS    EP  GY +  T     +++   GLG++  VT+R +++ +P+P  LP A+
Sbjct: 98  AIAFLDSHRHLEPAVGYAYLKTAS--VNKDLKAGLGYSVLVTSRVDYDNVPIPGALPWAA 155

Query: 156 VGYGPVTFQMTYIPGT----YNNGNVYFAWMRFQF 186
           + Y  +T   TYIPG+    + NGNV +   +   
Sbjct: 156 LFYKRITIAATYIPGSSREGHENGNVLYMLGKISL 190


>UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP
           n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO
          Length = 231

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 9/163 (5%)

Query: 30  WMTTFR---ENIAQTWQQPEHYDLYIPAITWHARFAYDKEKT--DRYNERPWGGGFGLSR 84
           W++ F+     + Q W +  H DLY+    WH RF Y  E+    +YNE  WGGG G   
Sbjct: 70  WLSLFKPVCHRLHQVWTE-GHTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGGLGKGF 128

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143
           +DEKGNWHGLYA AF DS    EP AGY +         + F  GLGF+  VTAR D ++
Sbjct: 129 FDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVAN--ITKEFKAGLGFSVLVTARPDIFH 186

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            IP P  +P A + Y  ++ +  YIPG+  NGNV +    + F
Sbjct: 187 NIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229


>UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12
           RepID=C7HWX4_THIIN
          Length = 192

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 8/155 (5%)

Query: 37  NIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYA 96
           N A +  Q    DLY    TWH    Y   K    N+  WG G+G    +  GN   +YA
Sbjct: 41  NAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKHAWGIGWGRHHINADGNEDMVYA 100

Query: 97  MAFKDS-WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLA 154
           M F DS WN  EP+ GY  +  W    D     GLG+T  VT+R D ++ IP P+ LP+A
Sbjct: 101 MIFSDSHWNA-EPVVGYAHQ--WMFNNDAPVGFGLGYTLAVTSRADIFHNIPFPIALPIA 157

Query: 155 SVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186
           S+ +G ++   T+IP      NNGNV F + R++F
Sbjct: 158 SIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C...   276   2e-73
UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy...   249   4e-65
UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy...   247   1e-64
UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax...   243   2e-63
UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy...   235   4e-61
UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1...   230   2e-59
UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy...   229   4e-59
UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy...   228   7e-59
UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy...   224   1e-57
UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy...   220   2e-56
UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A...   218   6e-56
UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy...   216   2e-55
UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH             216   4e-55
UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy...   211   9e-54
UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo...   185   4e-46

Sequences not found previously or not previously below threshold:

UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C...    44   0.002

>UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI
          Length = 186

 Score =  276 bits (707), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
Sbjct: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
Sbjct: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120

Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180
           LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180

Query: 181 WMRFQF 186
           WMRFQF
Sbjct: 181 WMRFQF 186


>UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56
           Tax=Enterobacteriaceae RepID=D0KD36_PECWW
          Length = 209

 Score =  249 bits (636), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/161 (65%), Positives = 128/161 (79%)

Query: 26  NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRW 85
             + W    + N++ TW   + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR 
Sbjct: 49  QDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRL 108

Query: 86  DEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYI 145
           D+ G+WHGLY MAFKDS+NKWEPI GYG+E  WRP  D++F LGLGFTAG T RDNWNYI
Sbjct: 109 DQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYI 168

Query: 146 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           P+PVLLPLAS+ Y  ++FQ TYIPGTYNNGNV+FAW R+Q 
Sbjct: 169 PIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209


>UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK
          Length = 184

 Score =  247 bits (631), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MN+   +   S   +  ++          W+    E I+ TW+  +H DLYIP  T H R
Sbjct: 1   MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYD +K D + E  WG G+G SR++  GNW G+Y MAF DS +  +P+ GYG +  W  
Sbjct: 60  FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117

Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179
                 H G+G+TA +T+R D +  IP+P +LP+AS+ Y   +   +Y+PG   NGN+ F
Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177

Query: 180 AWMRFQF 186
            W R  F
Sbjct: 178 FWSRVGF 184


>UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella
           RepID=Q2KVI8_BORA1
          Length = 185

 Score =  243 bits (621), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 10  FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69
           F    + L ++     +   W  +    I Q W +  + DLY+   +WH R  Y   K  
Sbjct: 11  FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+    +    ENF LG
Sbjct: 70  SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127

Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            G+T  +TAR D  +Y+P P +LPL   GY       TYIPG   NGNV F + R  F
Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185


>UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3
           Tax=Enterobacteriaceae RepID=C6C6T1_DICDC
          Length = 166

 Score =  235 bits (600), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/160 (62%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 28  DEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDE 87
           D +    + N+++TW   +  DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR D 
Sbjct: 7   DGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSRLDS 66

Query: 88  KGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWNYIP 146
            G+WHG+Y MAFKDS+NKWEPI GYG+E  W+P+A +++F LGLGFTAGVT RDNWNYIP
Sbjct: 67  DGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWNYIP 126

Query: 147 LPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           +PVLLPLAS+ Y  ++FQMTYIPGT+NNGNVYFAW+R+Q 
Sbjct: 127 IPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166


>UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH
          Length = 206

 Score =  230 bits (586), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 23  VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82
             + A  +     +N+  TW+  + Y+LY+PAITWH R  YD++K D YNE PWG G G 
Sbjct: 46  ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104

Query: 83  SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142
            R+D  GNWH LYAM F DS +K EP AGY W+  WRP   ++  LG GFT GVTAR ++
Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162

Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           +YIP P +LPL SV Y  +  Q TYIPG +NNGNV F W+R+Q 
Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206


>UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1
           Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR
          Length = 205

 Score =  229 bits (583), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 32  TTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNW 91
             F  NI + W    HY++Y+P + WH R  YD +K   YNE PWG G G   +D+  NW
Sbjct: 51  ERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKCHFDQNSNW 109

Query: 92  HGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLL 151
           H +YAMAF DS NK +PI GYG++  WRP   + F LG GFT  +TAR+ + Y+ +P+ L
Sbjct: 110 HSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYWYLAIPLPL 169

Query: 152 PLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQ 185
           P+AS+ Y  ++ Q TY+PGTYNNGNV FAW+R+Q
Sbjct: 170 PIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQ 203


>UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS
          Length = 183

 Score =  228 bits (581), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%)

Query: 12  FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67
            V   L+    V     ++ D W+      + Q WQQ +  ++Y+P   +H R AY  EK
Sbjct: 7   SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65

Query: 68  TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127
            D +NE+ WG G G    D+ G+WHGLYAMAF DS N  EPIAGY ++S  R    EN+ 
Sbjct: 66  IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123

Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            GLGFTA +T+R D  +Y P+P +LPLASV Y  +    TYIPG   NGNV F + R+ F
Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183


>UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4
           Tax=Enterobacteriaceae RepID=A4WC09_ENT38
          Length = 191

 Score =  224 bits (572), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
           W   +  +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G
Sbjct: 34  WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148
           +W  LYAM FKDS N+W+PI GYGWE+ W      +F LGLG TAG+TAR ++ NY+PLP
Sbjct: 94  DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153

Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           ++LPL S GY  +  Q TYIPGTYNNGNV FAW+R+ F
Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191


>UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21
           Tax=Enterobacteriaceae RepID=B1JPR0_YERPY
          Length = 202

 Score =  220 bits (560), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
           A  + W    R N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R
Sbjct: 43  AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 100

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144
           +DE  NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++Y
Sbjct: 101 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 160

Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           IPLP+ LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R+QF
Sbjct: 161 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202


>UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE
          Length = 217

 Score =  218 bits (556), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
           A  + W    R N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R
Sbjct: 61  AEGNLWQRLIR-NVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYR 118

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNY 144
           +DE  NWH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++Y
Sbjct: 119 YDEDNNWHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHY 178

Query: 145 IPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183
           IPLP+ LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R
Sbjct: 179 IPLPLPLPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217


>UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RSV8_9PROT
          Length = 184

 Score =  216 bits (551), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 20  VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79
           V     +   +  +  + +  TW+Q +  ++ +P  T+H  FAY + K D + +  WG G
Sbjct: 20  VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
           +G SR+D++GNWH LYAM F+DS +K+EPI GYG++  W     +  H GLG+T  VTAR
Sbjct: 79  YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D  NY P P +LP+ASV Y      M+Y+PG   NGNV F W RF F
Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184


>UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH
          Length = 190

 Score =  216 bits (549), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 13  VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65
             I  ++            +    ++    + I QTW +  H D+Y     WH R+ Y  
Sbjct: 9   TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67

Query: 66  EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125
           EK   YNE  WGGG G S +DEKGNWHGLYA+AF DS    EP  GY +  T     +++
Sbjct: 68  EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125

Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181
              GLG++  VT+R +++ +P+P  LP A++ Y  +T   TYIPG     + NGNV +  
Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185

Query: 182 MRFQF 186
            +   
Sbjct: 186 GKISL 190


>UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP
           n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO
          Length = 231

 Score =  211 bits (537), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 9/163 (5%)

Query: 30  WMTTF---RENIAQTWQQPEHYDLYIPAITWHARFAYDKEKT--DRYNERPWGGGFGLSR 84
           W++ F      + Q W +  H DLY+    WH RF Y  E+    +YNE  WGGG G   
Sbjct: 70  WLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGGLGKGF 128

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR-DNWN 143
           +DEKGNWHGLYA AF DS    EP AGY +         + F  GLGF+  VTAR D ++
Sbjct: 129 FDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTARPDIFH 186

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            IP P  +P A + Y  ++ +  YIPG+  NGNV +    + F
Sbjct: 187 NIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229


>UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12
           RepID=C7HWX4_THIIN
          Length = 192

 Score =  185 bits (471), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 15  IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74
           +   +   +             N A +  Q    DLY    TWH    Y   K    N+ 
Sbjct: 19  LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78

Query: 75  PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134
            WG G+G    +  GN   +YAM F DS    EP+ GY  +  W    D     GLG+T 
Sbjct: 79  AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136

Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186
            VT+R D ++ IP P+ LP+AS+ +G ++   T+IP      NNGNV F + R++F
Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192


>UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD
          Length = 147

 Score = 44.2 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 69  DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128
             YNE   GGG     W  +G+   +   A KDS ++    A  G+             L
Sbjct: 37  RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85

Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183
           G GF    T R     + +YI  P  LP   +GY  VT + TYIP    N       W R
Sbjct: 86  GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144

Query: 184 FQF 186
             F
Sbjct: 145 INF 147


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=C...   252   5e-66
UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acy...   234   9e-61
UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acy...   232   3e-60
UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax...   226   3e-58
UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acy...   222   3e-57
UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1...   219   3e-56
UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acy...   216   3e-55
UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH             216   3e-55
UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acy...   215   5e-55
UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acy...   215   6e-55
UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acy...   208   7e-53
UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acy...   206   4e-52
UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A...   205   8e-52
UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acy...   204   9e-52
UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomo...   187   1e-46
UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C...   101   1e-20

Sequences not found previously or not previously below threshold:

UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralston...    40   0.040
UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methyli...    39   0.096


CONVERGED!
>UniRef50_P37001 Protein crcA n=68 Tax=Enterobacteriaceae RepID=CRCA_ECOLI
          Length = 186

 Score =  252 bits (643), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR
Sbjct: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP
Sbjct: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120

Query: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180
           LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA
Sbjct: 121 LADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFA 180

Query: 181 WMRFQF 186
           WMRFQF
Sbjct: 181 WMRFQF 186


>UniRef50_D0KD36 Antimicrobial peptide resistance and lipid A acylation PagP n=56
           Tax=Enterobacteriaceae RepID=D0KD36_PECWW
          Length = 209

 Score =  234 bits (598), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/161 (65%), Positives = 128/161 (79%)

Query: 26  NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRW 85
             + W    + N++ TW   + +D+YIPAITWH R+ YDKEKTD+YNERPWG G+G+SR 
Sbjct: 49  QDESWWQRSKHNLSATWNTSQSHDIYIPAITWHNRWTYDKEKTDKYNERPWGAGYGVSRL 108

Query: 86  DEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYI 145
           D+ G+WHGLY MAFKDS+NKWEPI GYG+E  WRP  D++F LGLGFTAG T RDNWNYI
Sbjct: 109 DQDGDWHGLYIMAFKDSFNKWEPIGGYGYEKRWRPTHDQDFQLGLGFTAGFTMRDNWNYI 168

Query: 146 PLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           P+PVLLPLAS+ Y  ++FQ TYIPGTYNNGNV+FAW R+Q 
Sbjct: 169 PIPVLLPLASISYSKLSFQATYIPGTYNNGNVFFAWFRWQI 209


>UniRef50_Q1H2L0 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Methylobacillus flagellatus KT RepID=Q1H2L0_METFK
          Length = 184

 Score =  232 bits (593), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 4/187 (2%)

Query: 1   MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHAR 60
           MN+   +   S   +  ++          W+    E I+ TW+  +H DLYIP  T H R
Sbjct: 1   MNIRHGIIAMSSTMLVPLAAEAACNTDYSWIDKSCERISDTWKNGDH-DLYIPLWTHHLR 59

Query: 61  FAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRP 120
           FAYD +K D + E  WG G+G SR++  GNW G+Y MAF DS +  +P+ GYG +  W  
Sbjct: 60  FAYDNDKIDSFREFTWGLGYGRSRYNAAGNWEGVYLMAFSDSHSNVQPMLGYGHQ--WMM 117

Query: 121 LADENFHLGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYF 179
                 H G+G+TA +T+R D +  IP+P +LP+AS+ Y   +   +Y+PG   NGN+ F
Sbjct: 118 GPRSGLHAGVGYTAFLTSRADIYKNIPIPGVLPIASLNYRQYSVNTSYVPGGRGNGNILF 177

Query: 180 AWMRFQF 186
            W R  F
Sbjct: 178 FWSRVGF 184


>UniRef50_Q2KVI8 Lipid A palmitoyl transferase (Fragment) n=4 Tax=Bordetella
           RepID=Q2KVI8_BORA1
          Length = 185

 Score =  226 bits (576), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 10  FSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD 69
           F    + L ++     +   W  +    I Q W +  + DLY+   +WH R  Y   K  
Sbjct: 11  FIGCLLCLPTLSYACESLPSWAQSACNRIDQIWTEGGN-DLYVTGYSWHNRSMYSASKIR 69

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            +NE+ WGGG+G S +DE G+W GLYAMAF DS +K EPIAGYG+    +    ENF LG
Sbjct: 70  SFNEKAWGGGWGRSLYDEDGDWQGLYAMAFLDSHSKVEPIAGYGFLKIGK--VSENFRLG 127

Query: 130 LGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            G+T  +TAR D  +Y+P P +LPL   GY       TYIPG   NGNV F + R  F
Sbjct: 128 AGYTVFLTARQDIMSYVPFPGILPLVGAGYKDAMLYATYIPGGRGNGNVLFLFGRMHF 185


>UniRef50_C6C6T1 Antimicrobial peptide resistance and lipid A acylation PagP n=3
           Tax=Enterobacteriaceae RepID=C6C6T1_DICDC
          Length = 166

 Score =  222 bits (567), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 25  ANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSR 84
              D +    + N+++TW   +  DLY+PA+TWH R+ Y ++K D+YNERPWG G+G+SR
Sbjct: 4   DGQDGFWQRAKNNLSETWHNGQSQDLYVPAMTWHNRWTYSRQKIDKYNERPWGAGYGVSR 63

Query: 85  WDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLA-DENFHLGLGFTAGVTARDNWN 143
            D  G+WHG+Y MAFKDS+NKWEPI GYG+E  W+P+A +++F LGLGFTAGVT RDNWN
Sbjct: 64  LDSDGDWHGIYLMAFKDSFNKWEPIGGYGYEKRWKPVAGNDDFQLGLGFTAGVTMRDNWN 123

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           YIP+PVLLPLAS+ Y  ++FQMTYIPGT+NNGNVYFAW+R+Q 
Sbjct: 124 YIPIPVLLPLASINYQRLSFQMTYIPGTHNNGNVYFAWLRWQL 166


>UniRef50_C1D6F2 PagP protein n=2 Tax=Betaproteobacteria RepID=C1D6F2_LARHH
          Length = 206

 Score =  219 bits (559), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 23  VFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGL 82
             + A  +     +N+  TW+  + Y+LY+PAITWH R  YD++K D YNE PWG G G 
Sbjct: 46  ASSAAPGFWQRSWDNVETTWRS-DRYELYLPAITWHNRAFYDRDKIDEYNEHPWGLGLGR 104

Query: 83  SRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW 142
            R+D  GNWH LYAM F DS +K EP AGY W+  WRP   ++  LG GFT GVTAR ++
Sbjct: 105 YRYDSDGNWHALYAMFFLDSHDKVEPFAGYAWQKIWRPA--DDVRLGAGFTVGVTARSDY 162

Query: 143 NYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           +YIP P +LPL SV Y  +  Q TYIPG +NNGNV F W+R+Q 
Sbjct: 163 SYIPFPAILPLVSVEYRRLALQATYIPGGHNNGNVLFGWLRWQL 206


>UniRef50_A4WC09 Antimicrobial peptide resistance and lipid A acylation PagP n=4
           Tax=Enterobacteriaceae RepID=A4WC09_ENT38
          Length = 191

 Score =  216 bits (550), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 30  WMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKG 89
           W   +  +++QTW +P+HYDLY+P ++WHARF YDKEKTD YNE P GGGFG+SR+DE+G
Sbjct: 34  WWNEWTTDVSQTWNEPQHYDLYVPFLSWHARFMYDKEKTDNYNEMPSGGGFGISRYDEEG 93

Query: 90  NWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNW-NYIPLP 148
           +W  LYAM FKDS N+W+PI GYGWE+ W      +F LGLG TAG+TAR ++ NY+PLP
Sbjct: 94  DWSSLYAMMFKDSHNEWQPIIGYGWENGWYLDNARDFRLGLGVTAGITARKDFANYVPLP 153

Query: 149 VLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           ++LPL S GY  +  Q TYIPGTYNNGNV FAW+R+ F
Sbjct: 154 IILPLFSAGYKNLNVQFTYIPGTYNNGNVLFAWLRYGF 191


>UniRef50_Q5ZZI5 Rcp n=6 Tax=Legionella RepID=Q5ZZI5_LEGPH
          Length = 190

 Score =  216 bits (550), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 13  VFIQLISVGKV-------FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK 65
             I  ++            +    ++    + I QTW +  H D+Y     WH R+ Y  
Sbjct: 9   TIICALNASAAAETTSNPCSRWISFLKPVCQRIHQTWTEG-HDDMYFSGYAWHNRYVYSN 67

Query: 66  EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADEN 125
           EK   YNE  WGGG G S +DEKGNWHGLYA+AF DS    EP  GY +  T     +++
Sbjct: 68  EKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFLDSHRHLEPAVGYAYLKTA--SVNKD 125

Query: 126 FHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPG----TYNNGNVYFAW 181
              GLG++  VT+R +++ +P+P  LP A++ Y  +T   TYIPG     + NGNV +  
Sbjct: 126 LKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKRITIAATYIPGSSREGHENGNVLYML 185

Query: 182 MRFQF 186
            +   
Sbjct: 186 GKISL 190


>UniRef50_B9YY74 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9YY74_9NEIS
          Length = 183

 Score =  215 bits (548), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 8/180 (4%)

Query: 12  FVFIQLISVGKV----FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEK 67
            V   L+    V     ++ D W+      + Q WQQ +  ++Y+P   +H R AY  EK
Sbjct: 7   SVLFTLLLASAVPAWGCSDGDGWLDAACRRVDQVWQQGQG-EVYLPGYAYHLRSAYRPEK 65

Query: 68  TDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFH 127
            D +NE+ WG G G    D+ G+WHGLYAMAF DS N  EPIAGY ++S  R    EN+ 
Sbjct: 66  IDSFNEQAWGFGLGRGLVDDDGDWHGLYAMAFLDSHNDLEPIAGYAYQS--RHHFSENWQ 123

Query: 128 LGLGFTAGVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            GLGFTA +T+R D  +Y P+P +LPLASV Y  +    TYIPG   NGNV F + R+ F
Sbjct: 124 AGLGFTAFLTSRSDTLHYFPVPGVLPLASVQYKRLALMGTYIPGGKGNGNVVFLFARYGF 183


>UniRef50_D2TYX7 Antimicrobial peptide resistance and lipid A acylation protein n=1
           Tax=Arsenophonus nasoniae RepID=D2TYX7_9ENTR
          Length = 205

 Score =  215 bits (548), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 24  FANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLS 83
            +        F  NI + W    HY++Y+P + WH R  YD +K   YNE PWG G G  
Sbjct: 43  SSKPFSLGERFTYNINKIWNS-YHYEIYLPFLIWHNRLTYDNKKISGYNETPWGLGIGKC 101

Query: 84  RWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWN 143
            +D+  NWH +YAMAF DS NK +PI GYG++  WRP   + F LG GFT  +TAR+ + 
Sbjct: 102 HFDQNSNWHSIYAMAFADSHNKVQPIVGYGFQKIWRPSNFDEFRLGAGFTLSITARNEYW 161

Query: 144 YIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           Y+ +P+ LP+AS+ Y  ++ Q TY+PGTYNNGNV FAW+R+Q+
Sbjct: 162 YLAIPLPLPIASIEYKQLSIQATYVPGTYNNGNVLFAWLRWQW 204


>UniRef50_C7RSV8 Antimicrobial peptide resistance and lipid A acylation PagP n=1
           Tax=Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1 RepID=C7RSV8_9PROT
          Length = 184

 Score =  208 bits (529), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 4/168 (2%)

Query: 20  VGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGG 79
           V     +   +  +  + +  TW+Q +  ++ +P  T+H  FAY + K D + +  WG G
Sbjct: 20  VAAACDDPTTFTGSLCKRLHDTWEQGQG-EVLLPFYTYHMPFAYSQAKLDSFEQNTWGLG 78

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
           +G SR+D++GNWH LYAM F+DS +K+EPI GYG++  W     +  H GLG+T  VTAR
Sbjct: 79  YGRSRYDDEGNWHSLYAMGFRDSHDKFEPIVGYGYQWMW--GERDGLHAGLGYTVFVTAR 136

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D  NY P P +LP+ASV Y      M+Y+PG   NGNV F W RF F
Sbjct: 137 SDIANYFPFPGILPIASVNYRRSALSMSYVPGGNGNGNVLFFWARFGF 184


>UniRef50_B1JPR0 Antimicrobial peptide resistance and lipid A acylation PagP n=21
           Tax=Enterobacteriaceae RepID=B1JPR0_YERPY
          Length = 202

 Score =  206 bits (523), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 31  MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90
                 N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  N
Sbjct: 48  WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 106

Query: 91  WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150
           WH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+ 
Sbjct: 107 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 166

Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
           LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R+QF
Sbjct: 167 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIRWQF 202


>UniRef50_A9ZAU1 PagP protein n=18 Tax=Enterobacteriaceae RepID=A9ZAU1_YERPE
          Length = 217

 Score =  205 bits (521), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 31  MTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGN 90
                 N++  W  P H +LYIP  TWH R+ YD EK   YNERPWG G+G  R+DE  N
Sbjct: 66  WQRLIRNVSLAWNSP-HQELYIPVNTWHNRWTYDDEKIASYNERPWGVGYGKYRYDEDNN 124

Query: 91  WHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVL 150
           WH +YAMAF DS N+ EPI GYG++  W P   E +  G GFTA +TAR  ++YIPLP+ 
Sbjct: 125 WHSVYAMAFMDSHNRVEPILGYGYQKMWIPGEREGWRFGAGFTASITARYEYHYIPLPLP 184

Query: 151 LPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMR 183
           LPL S+ Y  ++ Q TYIPGTYNNGNV F W+R
Sbjct: 185 LPLISIEYNRLSLQTTYIPGTYNNGNVLFTWIR 217


>UniRef50_D1RD17 Antimicrobial peptide resistance and Lipid A acylation protein PagP
           n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD17_LEGLO
          Length = 231

 Score =  204 bits (520), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 22  KVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTD--RYNERPWGGG 79
           K               + Q W +  H DLY+    WH RF Y  E+    +YNE  WGGG
Sbjct: 65  KGCKYWLSLFKPVCHRLHQVWTEG-HTDLYLSGYAWHNRFTYSAERIREKKYNELAWGGG 123

Query: 80  FGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTAR 139
            G   +DEKGNWHGLYA AF DS    EP AGY +         + F  GLGF+  VTAR
Sbjct: 124 LGKGFFDEKGNWHGLYAFAFLDSHRNVEPTAGYAYLRVA--NITKEFKAGLGFSVLVTAR 181

Query: 140 -DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQF 186
            D ++ IP P  +P A + Y  ++ +  YIPG+  NGNV +    + F
Sbjct: 182 PDIFHNIPFPGAVPWAGIFYKKLSVKAAYIPGSSTNGNVLYVVGTYSF 229


>UniRef50_C7HWX4 Palmitoyl transferase for lipid A n=1 Tax=Thiomonas intermedia K12
           RepID=C7HWX4_THIIN
          Length = 192

 Score =  187 bits (476), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 15  IQLISVGKVFANADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNER 74
           +   +   +             N A +  Q    DLY    TWH    Y   K    N+ 
Sbjct: 19  LVPRASWALGLGGVSDWAQSTWNAAVSTTQTGQDDLYFSGYTWHDPGTYTAAKRATLNKH 78

Query: 75  PWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTA 134
            WG G+G    +  GN   +YAM F DS    EP+ GY  +  W    D     GLG+T 
Sbjct: 79  AWGIGWGRHHINADGNEDMVYAMIFSDSHWNAEPVVGYAHQ--WMFNNDAPVGFGLGYTL 136

Query: 135 GVTAR-DNWNYIPLPVLLPLASVGYGPVTFQMTYIP---GTYNNGNVYFAWMRFQF 186
            VT+R D ++ IP P+ LP+AS+ +G ++   T+IP      NNGNV F + R++F
Sbjct: 137 AVTSRADIFHNIPFPIALPIASIRFGRLSIYGTFIPKVNNKLNNGNVAFFFGRYEF 192


>UniRef50_C5IHL3 Gp22 n=1 Tax=Burkholderia phage BcepIL02 RepID=C5IHL3_9CAUD
          Length = 147

 Score =  101 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 69  DRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHL 128
             YNE   GGG     W  +G+   +   A KDS ++    A  G+             L
Sbjct: 37  RAYNELNVGGGV---EWSPEGSGWLVGGFALKDSLSRLGAAAYGGYRVR--------CEL 85

Query: 129 GLGFTAGVTAR----DNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNG-NVYFAWMR 183
           G GF    T R     + +YI  P  LP   +GY  VT + TYIP    N       W R
Sbjct: 86  GGGFHVEATVRAGLLKDADYIG-PAALPAIGIGYRNVTVEATYIPAIGGNKVPAAVVWAR 144

Query: 184 FQF 186
             F
Sbjct: 145 INF 147


>UniRef50_B2ZXN9 Putative uncharacterized protein n=1 Tax=Ralstonia phage RSL1
           RepID=B2ZXN9_9CAUD
          Length = 333

 Score = 40.0 bits (92), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 62  AYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPL 121
            +      + N    G GFG            +       S N+   +A  G+   ++  
Sbjct: 214 TFRPTGNRKLNAVNPGSGFGKR---SAMAGWSVPVRTRTRSTNR-GYMAYGGY--RFKFG 267

Query: 122 ADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIP----GTYNNGNV 177
            ++ ++  +   AG     N + +   + LP   VGY  V+ + +  P         G V
Sbjct: 268 DEKGWNANVALKAGYLHGSNRHGL---MALPTVGVGYKNVSLEFSAFPYHTDDKGGKGIV 324

Query: 178 YFAWMRFQF 186
              W+R+QF
Sbjct: 325 VATWLRYQF 333


>UniRef50_A2SNF9 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum
           PM1 RepID=A2SNF9_METPP
          Length = 172

 Score = 38.8 bits (89), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 70  RYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLG 129
            YNE   G G     +    NW       +K+S  K        W             L 
Sbjct: 56  GYNETNTGIGI---EYGIDRNWTLAVG-TYKNSVFKRSTYIQGVWTPDVTTYNFGELSLK 111

Query: 130 LGFTAGVTA--RDNWNYIPLPVLLPLASVGYGPVTFQMTYIP 169
            G   GV     D       P +LP+ S  Y  V   +TYIP
Sbjct: 112 AGLAVGVVNGYPDQMQGGFFPAVLPVLSAEYKRVGVNLTYIP 153


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.315    0.138    0.433 

Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,342,927,235
Number of Sequences: 3077464
Number of extensions: 62452693
Number of successful extensions: 127215
Number of sequences better than 1.0e-01: 20
Number of HSP's better than  0.1 without gapping: 46
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 127092
Number of HSP's gapped (non-prelim): 53
length of query: 186
length of database: 1,040,396,356
effective HSP length: 121
effective length of query: 65
effective length of database: 668,023,212
effective search space: 43421508780
effective search space used: 43421508780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 89 (38.9 bits)
