Phyre 2 alignment of P37001 with c1x35C_

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Job Description | P37001
Confidence | 34.97% | Date | Thu Jan 5 11:54:10 GMT 2012
Rank | 8 | Aligned Residues | 26
% Identity | 23% | Template | c1x35C_
PDB info | PDB header:virus | Chain: C: PDB Molecule:coat protein; | PDBTitle: recombinant t=3 capsid of a site specific mutant of semv cp
Resolution | 4.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 158 | . | 160 | . | . | . | . | . | . | . | . | . |  |  | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | G | P | V | T | F | Q | M | T | Y | I | P | . | . | G | T | Y | N | N | G | N | V | Y | F | A | W | M | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | S | W | L | S | V | R | Y | T | Y | I | P | S | C | P | S | S | T | A | G | S | I | H | M | G | F | Q | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | B | T | T | S |  |  |  |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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