Phyre 2 Results for P37001

Email | l.a.kelley@imperial.ac.uk
Description | P37001
Date | Thu Jan 5 11:54:10 GMT 2012
Unique Job ID | 8340449e0b2aa36e

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1thqa_ |
|  | 100.0 | 99 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane enzyme PagP
2 | d1c8na_ |
|  | 42.4 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
3 | c4sbvC_ |
|  | 42.0 | 27 | PDB header:virus Chain: C: PDB Molecule:southern bean mosaic virus coat protein; PDBTitle: the refinement of southern bean mosaic virus in reciprocal2 space
4 | d4sbvc_ |
|  | 42.0 | 27 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
5 | d4sbva_ |
|  | 40.0 | 27 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
6 | d1f2nc_ |
|  | 39.9 | 21 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
7 | d2vq0a1 |
|  | 38.2 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
8 | c1x35C_ |
|  | 35.0 | 23 | PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: recombinant t=3 capsid of a site specific mutant of semv cp
9 | d1smva_ |
|  | 34.3 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
10 | c2izwC_ |
|  | 31.7 | 31 | PDB header:virus Chain: C: PDB Molecule:ryegrass mottle virus coat protein; PDBTitle: crystal structure of ryegrass mottle virus
11 | c1c8nC_ |
|  | 30.5 | 23 | PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: tobacco necrosis virus
12 | d1c8nc_ |
|  | 30.5 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
13 | c1f2nA_ |
|  | 30.5 | 15 | PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: rice yellow mottle virus
14 | d1f2na_ |
|  | 30.5 | 15 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
15 | d1ng0c_ |
|  | 29.1 | 19 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
16 | d1ng0a_ |
|  | 26.8 | 19 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
17 | c1ng0A_ |
|  | 26.8 | 19 | PDB header:virus Chain: A: PDB Molecule:coat protein; PDBTitle: the three-dimensional structure of cocksfoot mottle virus2 at 2.7a resolution
18 | d1smvc_ |
|  | 24.7 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
19 | d2tbvc_ |
|  | 24.3 | 29 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
20 | d2axtz1 |
|  | 19.7 | 33 | Fold:Transmembrane helix hairpin Superfamily:PsbZ-like Family:PsbZ-like
21 | c2zahC_ |
| not modelled | 16.6 | 38 | PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: x-ray structure of melon necrotic spot virus
22 | d1m3ya1 |
| not modelled | 15.5 | 38 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54
23 | d1opoa_ |
| not modelled | 12.2 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP
24 | c1opoB_ |
| not modelled | 12.2 | 23 | PDB header:virus Chain: B: PDB Molecule:coat protein; PDBTitle: the structure of carnation mottle virus
25 | d1bev1_ |
| not modelled | 12.2 | 23 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
26 | d1cov1_ |
| not modelled | 10.7 | 22 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
27 | d1igqa_ |
| not modelled | 9.7 | 26 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Transcriptional repressor protein KorB
28 | c1m4xC_ |
| not modelled | 8.3 | 38 | PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model
29 | d1p2za1 |
| not modelled | 8.3 | 26 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Adenovirus hexon
30 | c1j5qB_ |
| not modelled | 8.3 | 38 | PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
31 | d2d8za2 |
| not modelled | 8.1 | 56 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
32 | d1igub_ |
| not modelled | 7.8 | 26 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Transcriptional repressor protein KorB
33 | d2gr8a1 |
| not modelled | 7.8 | 29 | Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like
34 | d1txna_ |
| not modelled | 7.0 | 29 | Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase
35 | d1lrwb_ |
| not modelled | 6.9 | 50 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Methanol dehydrogenase subunit Family:Methanol dehydrogenase subunit
36 | c3hdfA_ |
| not modelled | 6.6 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:lysozyme; PDBTitle: crystal structure of truncated endolysin r21 from phage 21
37 | c2c1lA_ |
| not modelled | 6.3 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease
38 | d1qjpa_ |
| not modelled | 6.2 | 25 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
39 | c2inyA_ |
| not modelled | 6.0 | 26 | PDB header:viral protein Chain: A: PDB Molecule:hexon protein; PDBTitle: nanoporous crystals of chicken embryo lethal orphan (celo) adenovirus2 major coat protein, hexon
40 | c3c5yD_ |
| not modelled | 5.9 | 43 | PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
41 | c2ppwA_ |
| not modelled | 5.9 | 43 | PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
42 | d1aa7a_ |
| not modelled | 5.8 | 20 | Fold:Influenza virus matrix protein M1 Superfamily:Influenza virus matrix protein M1 Family:Influenza virus matrix protein M1
43 | c3l4cB_ |
| not modelled | 5.7 | 28 | PDB header:cell adhesion, cell invasion, apoptosis Chain: B: PDB Molecule:dedicator of cytokinesis protein 1; PDBTitle: structural basis of membrane-targeting by dock180
44 | d1qj8a_ |
| not modelled | 5.7 | 20 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
45 | d1t23a_ |
| not modelled | 5.7 | 46 | Fold:Chromosomal protein MC1 Superfamily:Chromosomal protein MC1 Family:Chromosomal protein MC1
46 | c2bviK_ |
| not modelled | 5.6 | 26 | PDB header:virus Chain: K: PDB Molecule:hexon protein; PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 2)
47 | d1xmeb2 |
| not modelled | 5.6 | 50 | Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region
48 | d1y60a_ |
| not modelled | 5.6 | 33 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Formaldehyde-activating enzyme, FAE
49 | c3onoA_ |
| not modelled | 5.5 | 57 | PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
50 | c3rpjA_ |
| not modelled | 5.5 | 25 | PDB header:transcription regulator Chain: A: PDB Molecule:curlin genes transcriptional regulator; PDBTitle: structure of a curlin genes transcriptional regulator protein from2 proteus mirabilis hi4320.
51 | d2hepa1 |
| not modelled | 5.4 | 29 | Fold:Long alpha-hairpin Superfamily:YnzC-like Family:YznC-like
52 | c2hepA_ |
| not modelled | 5.4 | 29 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384.
53 | d1ncqa_ |
| not modelled | 5.1 | 13 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
54 | c2kebA_ |
| not modelled | 5.1 | 29 | PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit