Phyre 2 alignment of P37001 with c1m4xC_

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Job Description | P37001
Confidence | 8.31% | Date | Thu Jan 5 11:54:10 GMT 2012
Rank | 28 | Aligned Residues | 26
% Identity | 38% | Template | c1m4xC_
PDB info | PDB header:virus | Chain: C: PDB Molecule:pbcv-1 virus capsid; | PDBTitle: pbcv-1 virus capsid, quasi-atomic model
Resolution | 28.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 144 | . | . | . | . |  |  |  |  |  |  |  |  | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | I | P | L | P | . | . | . | . | . | . | . | . | V | L | L | P | L | A | S | V | G | Y | G | P | V | T | F | Q | M | T | Y | I | P
Query Conservation |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | V | P | L | I | F | F | F | N | Q | T | P | G | L | A | L | P | L | I | A | L | Q | Y | H | E | V | K | L | Y | F | T | L | A | S
Template Known Secondary structure |  |  |  |  |  |  | S |  |  |  |  |  | G | G | G |  |  |  | G | G | G |  | T | T |  |  |  |  |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 148 | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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