BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (79 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64538 Uncharacterized protein yeiS n=89 Tax=Enterobact... 159 3e-38 UniRef50_D2TRH5 Putative membrane protein n=1 Tax=Citrobacter ro... 54 1e-06 UniRef50_C1M6I5 Putative uncharacterized protein n=1 Tax=Citroba... 53 2e-06 >UniRef50_P64538 Uncharacterized protein yeiS n=89 Tax=Enterobacteriaceae RepID=YEIS_ECO57 Length = 79 Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA Sbjct: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 YIGFGILSIGMIVYLIFYR Sbjct: 61 YIGFGILSIGMIVYLIFYR 79 >UniRef50_D2TRH5 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRH5_CITRO Length = 79 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 49/79 (62%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 M+ + F+V ++ + FRE K R+G ++K VK + EP+ + R NPG++++Y+ A Sbjct: 1 MEDKALFIVIGVLMVVGWTFREGVKALRSGTVEKTVKGSQEPLIIPRHANPGVYWSYVTA 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 Y G + ++ + ++L+F + Sbjct: 61 YFGVAVGALIVGIWLLFVK 79 >UniRef50_C1M6I5 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M6I5_9ENTR Length = 79 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 47/79 (59%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 M+ + F+V +I ++ RE KG R+G ++K VK + P+ + RAK P +++Y++ Sbjct: 1 MEGKTIFIVIGVLMIVLWTCREGLKGLRSGIVEKTVKGSQTPMIISRAKEPSTYWSYIIV 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 Y G I ++ ++L+F + Sbjct: 61 YFGMAIGALFTGIWLLFIK 79 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TRH5 Putative membrane protein n=1 Tax=Citrobacter ro... 102 3e-21 UniRef50_P64538 Uncharacterized protein yeiS n=89 Tax=Enterobact... 100 1e-20 UniRef50_C1M6I5 Putative uncharacterized protein n=1 Tax=Citroba... 100 2e-20 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D2TRH5 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRH5_CITRO Length = 79 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 49/79 (62%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 M+ + F+V ++ + FRE K R+G ++K VK + EP+ + R NPG++++Y+ A Sbjct: 1 MEDKALFIVIGVLMVVGWTFREGVKALRSGTVEKTVKGSQEPLIIPRHANPGVYWSYVTA 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 Y G + ++ + ++L+F + Sbjct: 61 YFGVAVGALIVGIWLLFVK 79 >UniRef50_P64538 Uncharacterized protein yeiS n=89 Tax=Enterobacteriaceae RepID=YEIS_ECO57 Length = 79 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 79/79 (100%), Positives = 79/79 (100%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA Sbjct: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 YIGFGILSIGMIVYLIFYR Sbjct: 61 YIGFGILSIGMIVYLIFYR 79 >UniRef50_C1M6I5 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M6I5_9ENTR Length = 79 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 47/79 (59%) Query: 1 MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVA 60 M+ + F+V +I ++ RE KG R+G ++K VK + P+ + RAK P +++Y++ Sbjct: 1 MEGKTIFIVIGVLMIVLWTCREGLKGLRSGIVEKTVKGSQTPMIISRAKEPSTYWSYIIV 60 Query: 61 YIGFGILSIGMIVYLIFYR 79 Y G I ++ ++L+F + Sbjct: 61 YFGMAIGALFTGIWLLFIK 79 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.328 0.150 0.447 Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 356,497,815 Number of Sequences: 3077464 Number of extensions: 13920736 Number of successful extensions: 72659 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72652 Number of HSP's gapped (non-prelim): 7 length of query: 79 length of database: 1,040,396,356 effective HSP length: 50 effective length of query: 29 effective length of database: 886,523,156 effective search space: 25709171524 effective search space used: 25709171524 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.2 bits) S2: 87 (37.9 bits)