BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (592 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 1217 0.0 UniRef50_B0TS74 Putative sigma54 specific transcriptional regula... 620 e-176 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 421 e-116 UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-c... 410 e-113 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 409 e-112 UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=1... 395 e-108 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 394 e-108 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 394 e-108 UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional ... 387 e-106 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 385 e-105 UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis ... 383 e-104 UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis ... 380 e-103 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 373 e-101 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 360 7e-98 UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium ... 360 9e-98 UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Des... 358 2e-97 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 345 3e-93 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 341 4e-92 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 341 4e-92 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 339 2e-91 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 326 2e-87 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 324 8e-87 UniRef50_C5EGG3 Signal-transduction and transcriptional-control ... 304 5e-81 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 299 2e-79 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 296 1e-78 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 296 1e-78 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 293 9e-78 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 293 1e-77 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 291 4e-77 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 291 4e-77 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 291 7e-77 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 290 1e-76 UniRef50_B6WWU2 Putative uncharacterized protein n=1 Tax=Desulfo... 290 1e-76 UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regu... 290 1e-76 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 286 2e-75 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 285 3e-75 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 284 5e-75 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 284 8e-75 UniRef50_UPI000197326E probable transcriptional regulator n=1 Ta... 283 1e-74 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 283 1e-74 UniRef50_A7GLU4 Putative PAS/PAC sensor protein n=1 Tax=Bacillus... 283 1e-74 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 282 2e-74 UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostri... 282 3e-74 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 281 4e-74 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 281 4e-74 UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=F... 281 4e-74 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 281 5e-74 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 281 6e-74 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 281 6e-74 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 281 6e-74 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 280 1e-73 UniRef50_P26047 Signal-transduction and transcriptional-control ... 280 2e-73 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 279 2e-73 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 278 5e-73 UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 T... 278 5e-73 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 278 5e-73 UniRef50_Q188I7 Sigma-54-dependent transcriptional regulator n=4... 278 6e-73 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 277 7e-73 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 276 1e-72 UniRef50_C6CDP8 Putative sigma54 specific transcriptional regula... 276 1e-72 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 276 1e-72 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 276 2e-72 UniRef50_C5EQI0 Sigma54 specific transcriptional regulator n=1 T... 275 3e-72 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 275 4e-72 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 275 4e-72 UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with ... 274 5e-72 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 273 9e-72 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 273 9e-72 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 273 1e-71 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 273 1e-71 UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio b... 273 1e-71 UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC ... 273 2e-71 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 273 2e-71 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 273 2e-71 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 273 2e-71 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 273 2e-71 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 273 2e-71 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 273 2e-71 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 272 2e-71 UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional... 272 2e-71 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 272 2e-71 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 272 3e-71 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 272 3e-71 UniRef50_B8G0D1 Putative sigma54 specific transcriptional regula... 272 3e-71 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 271 4e-71 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 271 4e-71 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 271 5e-71 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 271 6e-71 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 270 8e-71 UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional r... 270 9e-71 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 270 1e-70 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 270 1e-70 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 270 1e-70 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 270 1e-70 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 269 2e-70 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 269 2e-70 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 269 2e-70 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 269 2e-70 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 269 3e-70 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 268 3e-70 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 268 3e-70 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 268 5e-70 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 268 5e-70 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 268 6e-70 UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transc... 267 8e-70 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 267 9e-70 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 267 9e-70 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 267 1e-69 UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with ... 267 1e-69 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 267 1e-69 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 266 1e-69 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 266 1e-69 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 266 1e-69 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 266 2e-69 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 266 2e-69 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 266 2e-69 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 266 2e-69 UniRef50_C5CF13 Two component, sigma54 specific, transcriptional... 266 2e-69 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 265 3e-69 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 265 3e-69 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 265 3e-69 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 265 3e-69 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 265 4e-69 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 265 4e-69 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 265 5e-69 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 265 5e-69 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 264 6e-69 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 264 7e-69 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 264 7e-69 UniRef50_C2W6V6 Sigma54 specific transcriptional regulator, Fis ... 264 7e-69 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 264 8e-69 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 264 9e-69 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 263 1e-68 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 263 1e-68 UniRef50_Q314G6 Two component transcriptional regulator, Fis fam... 263 1e-68 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 263 1e-68 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 263 1e-68 UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interact... 263 1e-68 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 263 2e-68 UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokel... 263 2e-68 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 263 2e-68 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 263 2e-68 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 262 2e-68 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 262 2e-68 UniRef50_C1A631 Putative NtrC family two-component response regu... 262 2e-68 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 262 2e-68 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 262 3e-68 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 262 3e-68 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 262 3e-68 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 262 3e-68 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 262 3e-68 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 262 3e-68 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 262 3e-68 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 262 4e-68 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 261 4e-68 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 261 4e-68 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 261 5e-68 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 261 5e-68 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 261 5e-68 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 261 5e-68 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 261 5e-68 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 261 5e-68 UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fi... 261 5e-68 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 261 6e-68 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 261 6e-68 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 261 6e-68 UniRef50_C0Z891 Probable transcriptional regulator n=1 Tax=Brevi... 261 7e-68 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 261 7e-68 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 261 8e-68 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 260 8e-68 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 260 9e-68 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 260 9e-68 UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/res... 260 9e-68 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 260 9e-68 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 260 1e-67 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 260 1e-67 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 260 1e-67 UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1... 260 1e-67 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 260 1e-67 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 260 1e-67 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 259 2e-67 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 259 2e-67 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 259 2e-67 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 259 2e-67 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 259 2e-67 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 259 2e-67 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 259 2e-67 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 259 2e-67 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 259 2e-67 UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional r... 259 3e-67 UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-... 259 3e-67 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 259 3e-67 UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis ... 259 3e-67 UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis ... 259 3e-67 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 258 3e-67 UniRef50_C0Z9M8 Putative transcriptional regulator n=1 Tax=Brevi... 258 3e-67 UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 depende... 258 3e-67 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 258 4e-67 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 258 4e-67 UniRef50_C6JR82 Sigma-54-dependent transcriptional regulator n=2... 258 5e-67 UniRef50_C0ZBK7 Putative transcriptional regulator n=1 Tax=Brevi... 258 5e-67 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 258 5e-67 UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Me... 258 6e-67 UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Des... 258 6e-67 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 258 6e-67 UniRef50_Q6AJU9 Related to two-component system response regulat... 258 6e-67 UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearot... 258 7e-67 UniRef50_Q18CQ7 Putative sigma-54-dependent transcriptional regu... 258 7e-67 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 257 7e-67 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 257 7e-67 UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostri... 257 7e-67 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 257 7e-67 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 257 8e-67 UniRef50_A8V0D6 Sigma 54-dependent transcriptional activator con... 257 9e-67 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 257 9e-67 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 257 1e-66 UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostri... 257 1e-66 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 257 1e-66 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 256 1e-66 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 256 1e-66 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 256 1e-66 UniRef50_C2WFS2 Sigma54 specific transcriptional regulator, Fis ... 256 1e-66 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 256 1e-66 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 256 1e-66 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 256 2e-66 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 256 2e-66 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 256 2e-66 UniRef50_Q891P7 Transcriptional response regulator n=1 Tax=Clost... 256 2e-66 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 256 2e-66 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 256 2e-66 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 256 2e-66 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 256 2e-66 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 256 2e-66 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 255 3e-66 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 255 3e-66 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 255 3e-66 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 255 3e-66 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 255 3e-66 UniRef50_C9NV48 Sigma-54 dependent transcriptional regulator n=1... 255 3e-66 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 255 3e-66 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 255 3e-66 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 255 4e-66 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 255 4e-66 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 255 4e-66 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 255 4e-66 UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis ... 255 4e-66 UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and A... 254 4e-66 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 254 5e-66 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 254 5e-66 >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 1217 bits (3149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/592 (100%), Positives = 592/592 (100%) Query: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS Sbjct: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 Query: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH Sbjct: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN Sbjct: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN Sbjct: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 Query: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG Sbjct: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL Sbjct: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF Sbjct: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI Sbjct: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL Sbjct: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT Sbjct: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 >UniRef50_B0TS74 Putative sigma54 specific transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=B0TS74_SHEHH Length = 555 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 302/563 (53%), Positives = 407/563 (72%), Gaps = 10/563 (1%) Query: 27 VLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEG 86 +LQL+ E+VD +L R+AGTG Y K LG++L+ +SR+ R+++ETK KVV ++R DP+CEG Sbjct: 1 MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEG 60 Query: 87 CDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 C + +NCRE AFLG P++L DRC+GV+SL+A E + I +N++ F DY+ HIS + V Sbjct: 61 CSNHDNCRETAFLGVPIMLDDRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVI 120 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 K+ E + G N+ ++F+ +I+NMDQGVLV+DD NRV N AL L + + + + Sbjct: 121 KVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGNPQALDILNISHSELALIEVN 180 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 +PL +N G QHIV+ + EL++GQ H I +QLFLM+FHQ +TS + + P Sbjct: 181 IQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS 240 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P ++GE M QLK LI+R+A SPSS+++ GESGTGKEV A+AIHK S R + F+A Sbjct: 241 P-FSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVA 299 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIPEQLLESELFGYVKGAFTGA GK GLIQAAN GTLFLDEIGDM + LQ+KLL Sbjct: 300 INCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLL 359 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E RE++P+G+++ V+IRIISATN+N A+ IA +FREDL+YRLNVIP+ LP LRE Sbjct: 360 RVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRE 419 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+ DIELLV+YFL H++ +G+ YPGI +V+ L + WPGN+RELSNL+EYLVN+VPS Sbjct: 420 REGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPS 479 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G+ ID LLPP T Q T + +S++D +LEEME+ I ++++R ++ Sbjct: 480 GDQIDIDLLPPYF----DTPQESCTPM----VSIND-DNVSLEEMERIKIEDSINRLGNR 530 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 K VA ELGIG+ATLYRK+KKY L Sbjct: 531 KLVAKELGIGVATLYRKLKKYRL 553 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 235/604 (38%), Positives = 367/604 (60%), Gaps = 43/604 (7%) Query: 7 QSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHV 66 +++L IQPT+ ++A++++ VL++EVEI DENL R+AGTG + K + + + G + R Sbjct: 2 KTILEDIQPTVIKYAKIISKVLKVEVEIADENLVRIAGTGIFKKKINKSMLGEGYVYRTA 61 Query: 67 LETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHI 126 L T +++ + LC C NC EK + TP+ L D +GVI LI + +EQ+EH+ Sbjct: 62 LRTGIPQIIENPGKEKLCLPCCKCGNCEEKFEMCTPIKLGDDVIGVIGLICLNNEQREHL 121 Query: 127 SDNLREFSDYVRHISTIFVS--------KLLEDQGPGDNISKIFATMIDNMDQGVLVVDD 178 + + ++++ IS F+S KL E + + +ID MD+GV++++ Sbjct: 122 MKDFHAYMEFLKQISE-FISITAYERKEKLREQV-----LLRSLNLVIDKMDRGVIILNK 175 Query: 179 ENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL 238 + ++ +N+ A++ L + N+ I + ++ + ES G ++ + +++ ++G + Sbjct: 176 KGKITHINKKAMEILNFIDNHFIHE-VKVEEVG-ES--IAGMHEYKLKINNQKFSVVGNI 231 Query: 239 HN--IQGRQLFLMAFHQSHTSFS-----VANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 H+ + Q + Q + SF V+NA + ++GEC VM LK+ + +I+ Sbjct: 232 HDMGLNENQFDKIIIFQDNKSFKDIVTGVSNAGNNIVCNDILGECEVMITLKKNLKKISL 291 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S S+V++ GESGTGKE+ ARA+H R+ + FIAINCAAIP+ LLESELFGYVKGAFTG Sbjct: 292 SSSTVLITGESGTGKEMFARAMHNEGNRKKEAFIAINCAAIPDSLLESELFGYVKGAFTG 351 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 AS+ GK G + AN GT+FLDEIGDMPL LQ KLLR ++ R I+ IG++ PI +D+R+I+ Sbjct: 352 ASSTGKIGKFELANKGTIFLDEIGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIA 411 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NL + I E KFREDL+YRLNVIP +PPLRER +DI++LV+ F+ +T+ L + Sbjct: 412 ATNKNLVKLIEENKFREDLYYRLNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDKHFS 471 Query: 472 GIAPD--VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD 529 I D V E + WPGN+REL N +E+++N++ + + +P ++L N + Sbjct: 472 SIHIDNKVWETFYNYSWPGNIRELENTIEFMINMLGTDGNLTIDSIPNSVLYNERKIKKG 531 Query: 530 VTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIK 585 EV L+E+EK I +AL+ + Q A +LGIGIATLYRKI+ Sbjct: 532 KKEVYN------------LKELEKNEIIKALNIYGPSAQGKKAAAKKLGIGIATLYRKIE 579 Query: 586 KYEL 589 +Y L Sbjct: 580 EYNL 583 >UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-control protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5B22 Length = 577 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/594 (37%), Positives = 352/594 (59%), Gaps = 29/594 (4%) Query: 7 QSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHV 66 + +L Q+Q Q++ +L+ +L+++V I+D R+AG+G + LG +S +++ Sbjct: 2 EGILQQMQGIAQKYVDILSEILKIDVTIIDIRQIRIAGSGRMQERLG-DMSSYGYIVKTC 60 Query: 67 LETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHI 126 LE+K V+T +C C K C K+ + P+IL D+ +G + + +Q+ H Sbjct: 61 LESKKRIVLTNPEDSEICFSCPKKATCDNKSEVWQPLILDDKVIGALGFVCFNQKQKNHF 120 Query: 127 SDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 N F ++ S + VSK + + ++ +F +ID ++ G++V++ E Sbjct: 121 EKNYNLFLKFLEQFSDLIVSKARDVIEFNRNKDVLLLFENVIDRVEMGMIVLNKEEEAVK 180 Query: 185 VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ-- 242 +NQ A K L + N GK + + ++ + ++ + IG+ ++++ Sbjct: 181 INQLARKILHI---NEAGKKLPDILFSETGKKVLDLKEYQIQIENITYTAIGKFYDVELE 237 Query: 243 -GRQLFLM--AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 +++FL A + + N+ + I++++G + +K I IAPS SSV + Sbjct: 238 DYKKVFLFQNAVYDEENILGINNSLQKRDIDKILGVSSKIMSIKEKIQIIAPSASSVFIT 297 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+VA A+H S R+N PFIA NCA+IPE LLESELFGYVKGAFTGA G+ G Sbjct: 298 GESGTGKELVATALHSESERKNFPFIAFNCASIPENLLESELFGYVKGAFTGADNKGRIG 357 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + +AAN GTLFLDE+GDMP LQ KLLR +E +EI +G++ I++D+R+I+ATN+N+ + Sbjct: 358 IFEAANGGTLFLDEVGDMPSYLQVKLLRVLERKEITRLGSNQVIKIDVRLIAATNKNMEE 417 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + +G+FREDL+YRLNVIPI LPPLRER+EDI++L F+ ++ L GI + Sbjct: 418 LVTKGEFREDLYYRLNVIPIKLPPLRERKEDIKILAKNFIDKYSSILNKTVSGIDQNFWR 477 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 + ++ WPGN+REL N MEY+VN++ EVI+ LLP +L H++ Sbjct: 478 KMEEYSWPGNVRELQNSMEYVVNMMKYTEVINFRLLPHKVLG--------------KHIT 523 Query: 540 LDDAGGTALEEMEKQMIREALSRH----NSKKQVADELGIGIATLYRKIKKYEL 589 +D+ LE MEK+MI + L+ + +K+++A +LGIGIATLYRKIK YEL Sbjct: 524 IDEEENFNLEHMEKRMIEKLLNIYGYSPEAKQEIAKKLGIGIATLYRKIKVYEL 577 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/601 (40%), Positives = 350/601 (58%), Gaps = 30/601 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S+L +IQ ++ +A ++A +LQ +VEI DE+L R+AGTG Y + + G + ++V Sbjct: 2 SLLKKIQNYVKDYAEIIADILQCDVEIADEDLVRIAGTGQYSENINELCKG--IVYKNVF 59 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 ETK +++ + D LCE C K+ C E + P+ +D+ +GVI LI T E ++ + Sbjct: 60 ETKKSRILINPKEDELCEECSHKDTCTETLEMSAPIFYKDKVIGVIGLICFTEEDKKRLL 119 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFV 185 N+ + + I K+ E + + I I +I+N D+ VLVVD E ++ Sbjct: 120 KNMETYLKFTEKIGDFISGKVFELEEELEKKEIMGIMKQIINNYDKCVLVVDSEGKILDA 179 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSEL--IIGQLHNIQG 243 N ALK L + G + ++ + + I S + E +IG L + G Sbjct: 180 NDLALKELKIES----GLGLAYQRINIIPKNEALFGKDIFSAEINREKYNLIGTLIPVTG 235 Query: 244 -----RQLFLMA---FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 ++FL F +S A + +E ++ + M +LK I +IA + S+ Sbjct: 236 FSSKEYKIFLFENFNFDKSKEISKNKYAANNIFLEDIISKSEKMSKLKEKIRKIAKTQST 295 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V++ GESGTGKE++ARAIH S R +PFIAINC AIPE LLESELFGYVKGAF+GAS Sbjct: 296 VLITGESGTGKELIARAIHNCSDRAKQPFIAINCGAIPENLLESELFGYVKGAFSGASNE 355 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 G+ G + AN G +FLDEIG+MP LQ KLLR ++ R I+ IG++ I ++IR+I+ATN+ Sbjct: 356 GRVGKFELANNGVIFLDEIGEMPFFLQVKLLRVLQERTIVRIGSNKLINLNIRVIAATNK 415 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 NL + + EGKFREDL+YRLNVIP+ +P LRERQEDI LL Y +++ LGS + Sbjct: 416 NLLKLVKEGKFREDLYYRLNVIPLKVPALRERQEDILLLRDYLNTKYSKSLGSSKIVMDD 475 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTL---LPPNLLNNGTTEQSDVTE 532 D+ EI KH WPGN+REL N +E+L+N+ ID L NL +N + + Sbjct: 476 DINEIFLKHSWPGNVRELENSVEFLLNMSDENGNIDEETREDLKRNLKSNSKYDD----K 531 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYE 588 + E + DD T LEE EK++I +AL + S K A++LGIGIATLYRKI+KY+ Sbjct: 532 ILEKKVIEDDEIIT-LEESEKRLISKALRIYGSDTTGKNICAEKLGIGIATLYRKIEKYK 590 Query: 589 L 589 L Sbjct: 591 L 591 >UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=A5I5X3_CLOBH Length = 587 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 223/591 (37%), Positives = 348/591 (58%), Gaps = 27/591 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L++IQ T+ ++A +++SV++++VEIVD+NLCR+AGTG Y + + +S + +V+ Sbjct: 4 STLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVI 63 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T ++++ LC+ C+ + NC EK + TP+IL D +GVI L+ Q+ H Sbjct: 64 KTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFI 123 Query: 128 DNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 +N F + IS +K E + + + +ID++D+GVLV + N + + Sbjct: 124 ENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVTKN-NEIVHM 182 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ-------L 238 N +A+K L + NN K I ++ S + G + + D++ ++G+ L Sbjct: 183 NTSAMKQLKLKANNT-NKKI---TISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVL 238 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + +F H V+ + +E ++G+ + M QLK I +IA S S+V++ Sbjct: 239 SDYDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNSIKKIASSSSTVLI 298 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKEV+ARAIH S + PFIAINC AIP+ LLESELFGYV+GAF+GA NG+ Sbjct: 299 TGESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRV 358 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN G +FLDEIGDMPL LQ K+LR ++ R+++ IG++ I +DIR+I+ATN++L Sbjct: 359 GKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLK 418 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + I E KFREDL+YRLNVIP+ +PPLRER+EDIELL+ + + G + I + Sbjct: 419 KLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECK 478 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 +IL + W GN+REL N +E+++N+ ++ +LP N++ N + H Sbjct: 479 DILIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNF---------QGHG 529 Query: 539 SLDDAGGTALEEMEKQMIREALSRH----NSKKQVADELGIGIATLYRKIK 585 D L+++EK I AL + K+ A+ LGIGIATLYRK++ Sbjct: 530 MNIDEDIRPLKDVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLE 580 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/597 (38%), Positives = 339/597 (56%), Gaps = 32/597 (5%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 SVL IQ I +A ++ + +VEI+DE+L R+AGTG Y L ++ N + RHVL Sbjct: 3 SVLSNIQDDICNYADAISGITGTDVEIIDESLMRIAGTGKYRHMLNENVAKNGYIYRHVL 62 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 + + ++ PLC+ C+ C E L P+ L +R +GVI +I T Q++ + Sbjct: 63 QVRETVLIKNPGEHPLCQLCEKHHYCSEMLDLNAPIFLNNRVIGVIGIICSTQAQRDTLL 122 Query: 128 DNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + +F ++ I+ + SK+ E ++ F +ID MD+GV+ +D + + Sbjct: 123 SQIDKFVTFIEQIAVMISSKVFECLERLRAQETLGAFRRLIDAMDRGVVAIDGKGLIWHA 182 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELII-GQLHNIQGR 244 N +A + I+ + ++ PLT E+ + D+++ L + GQ H++ + Sbjct: 183 NHSA--------DRILNREVQGLPLTIETTGDS------LYGDEEAWLTLEGQKHHVLCK 228 Query: 245 Q----------LFLMAFHQSHTSFS-VANAPDEPHIE-QLVGECRVMRQLKRLISRIAPS 292 Q L ++ F +H S + +P E ++ +L+G M QL+ I +IA S Sbjct: 229 QISLSSQDNDRLTMIIFRDAHDYLSNLTPSPYESDMQVRLIGHSPSMEQLRSTIGKIANS 288 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 +SV++ GESG+GKEVVA AIH+ S R+ PF+ INCAAIPEQLLESELFGYV+GAF+GA Sbjct: 289 YASVLITGESGSGKEVVAFAIHQSSPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGA 348 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 G+ G + AN G+LFLDEIGDMPL LQAKLLR ++ + I +G+++ I +D+RII+A Sbjct: 349 DPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAA 408 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 TN+N+ + +FREDLFYRLNV+P+ LP LRER+ DI +L YF + Sbjct: 409 TNKNINAMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQK 468 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 + DV+ L WPGN+REL N++EY+ + I+++ LPP LL T T Sbjct: 469 LPDDVINRLYAWHWPGNIRELRNVIEYIFVMRGEAAGINASHLPPYLL---TAADGRKTT 525 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 ++ L G A E + +I+ S KKQ A ELGI IATLYRKIK Y L Sbjct: 526 MTAQPRQLASKGKQAEREAIENVIQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/617 (36%), Positives = 354/617 (57%), Gaps = 52/617 (8%) Query: 5 TTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLR 64 T S L + Q + ++ +ASVL +++EIVD+ L R++GTG Y + + + Sbjct: 4 TMLSKLKEFQQEMIKYTETVASVLDVDIEIVDDRLIRISGTGLYKSKINESVVTEGFIYD 63 Query: 65 HVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQE 124 +V++T E VV + LC C C K + P+ +R +GVI I+ ++ Sbjct: 64 NVIQTGQELVVLDICDNQLCIECSHYMKCLNKVIIAVPIKYNNRTIGVIGAISTDKTKKV 123 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI--FATMIDNMDQGVLVVDDENRV 182 IS + + +V HI + K+ E + ++ K+ +I+N+++GV+++D +++ Sbjct: 124 EISAKIDNYLKFVNHICDLISMKIEEHEASKNSSRKMDMMIEIIENVEKGVIILDINSKI 183 Query: 183 QFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 ++N ALK L + +N II + + SN GH + D+K ++NI Sbjct: 184 SYINNIALKKLDIYKN-IIENIVNIVSVESSSN---GHELLEIDIDNK-------IYNIN 232 Query: 243 GRQLFLMAF----------------HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 + + + + H+ H V + IE ++G M ++K Sbjct: 233 AKIIPVYPYINQYDKIIIFDKTYINHKGHGK--VNSGWGNSDIESIIGNSEAMLKVKERT 290 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 ++A S S+V++ GESGTGKE++ARAIH R NKPFIAINCAAIPE LLESELFGY+K Sbjct: 291 KKLAKSNSTVLITGESGTGKELIARAIHAEGSRWNKPFIAINCAAIPENLLESELFGYIK 350 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAF+GAS+ GK G + AN G +FLDEIGD+ + LQAKLLR ++ R+ IG++ I +D Sbjct: 351 GAFSGASSGGKVGKFELANEGVIFLDEIGDLSMPLQAKLLRVLQERKFARIGSNKLIDLD 410 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 IR+I+ATN+NL + + EGKFR+DL+YRLNVIPI LPPLRER++DIE ++ F ++ L Sbjct: 411 IRVIAATNKNLLKLVNEGKFRDDLYYRLNVIPINLPPLRERKDDIEAIMMKFASKYSLEL 470 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN----N 522 G I +V+ +L + WPGN+REL N +EY++N+V +I +LP ++LN N Sbjct: 471 GIQLNKIEENVMNMLINYNWPGNIRELENAVEYMMNLVGDDGIIYKDMLPLDILNYYNIN 530 Query: 523 GTT-EQSDVTEVSEAHLSLDDAGGT--------ALEEMEKQMIREALSRH----NSKKQV 569 G + D+ + E D GG +++E+E I + L+++ +KK++ Sbjct: 531 GNVCKNKDINIIFED----DIVGGIVENQERILSIKELELTYINKLLNKYGRDTKTKKKI 586 Query: 570 ADELGIGIATLYRKIKK 586 A +LGIG+ATLYRK+++ Sbjct: 587 AKDLGIGLATLYRKLEE 603 >UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional regulator YgeV n=3 Tax=Clostridium botulinum RepID=B2V0C5_CLOBA Length = 580 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/585 (36%), Positives = 346/585 (59%), Gaps = 21/585 (3%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L+ I+ I +++ +L+++L ++VEIVD+ L RVA TG Y K +G + + + L+T Sbjct: 5 LVDIKEIINKYSVLLSNLLTIDVEIVDDKLIRVAATGIYEKRIGENIRDQGYVYKKSLDT 64 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 V+ D LC+ C K NC E + P+ ++ GVI L+ +Q+E + N Sbjct: 65 GKTLVIENPGKDALCDECKKKGNCSEFMEICVPIKYEETTFGVIGLVCSNEDQKEKLKSN 124 Query: 130 LREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 L ++ I+ K++E +N K F +++++D G++ VD ++ + N Sbjct: 125 LPIMITFLEQIAEFISIKVIEQNQIFENENSIKFFKEIVNSVDDGIITVDIKDEIITANN 184 Query: 188 TALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSEL--IIGQL--HNIQG 243 ALK L V + NI+GK I T E + I +++ ++E IIG++ + I Sbjct: 185 NALKLLKV-KPNIVGKKI-----TVEETDEYTPKGGIYNFNIENEKFKIIGKVVKNCINN 238 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + + + + + + + +VG+ + +LK+ I +++ + +++++ GESG Sbjct: 239 KDCNKIIIFKELITIEEELKNNSINCDSIVGQANNIAELKKKIKKVSYTDATILITGESG 298 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+VARAIH R+N PFIAINC AIPE LLESELFGYVKGAF+GAS+ G+ G + Sbjct: 299 TGKELVARAIHSEGNRKNMPFIAINCGAIPENLLESELFGYVKGAFSGASSGGRIGKFEL 358 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 AN G +FLDEIGDMPL LQ K+LR ++ + I+ IG++ I ++IR+I+ATN+NL + + E Sbjct: 359 ANNGVIFLDEIGDMPLYLQVKILRVLQEKTIVKIGSNKLINLNIRVIAATNKNLKKLVDE 418 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 GKFR DL+YRLN+IP+ +P LR+R ED+ L+ + + R I +++ I + Sbjct: 419 GKFRADLYYRLNIIPMEVPSLRDRGEDVLLITKMLIEKYNARCNKYIHTIDKELIRIFKD 478 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E++V++ V++ ++LP + + + E + + +DD Sbjct: 479 YSWPGNIRELENIVEFMVSLSGENGVLEKSMLPISFVQSYNEELKN----RRDEICMDDE 534 Query: 544 GGTALEEMEKQMIREALSRH----NSKKQVADELGIGIATLYRKI 584 L+E+EK I++AL ++ SK +VA +LGIGIATLYRKI Sbjct: 535 -IMKLKEIEKIYIKKALEKYGNSTKSKMKVAKKLGIGIATLYRKI 578 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/597 (37%), Positives = 334/597 (55%), Gaps = 31/597 (5%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L I P I R A++++ V+ L+VE+V+ R+AGTG Y + +G + ++ R Sbjct: 1 MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARR 60 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 T V + RF P+C+GC K+ C EK L P+ + + G+I +I E + I Sbjct: 61 TGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILK 120 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPG--DNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 F D+V +S I +S + Q N + +++D GV V + ++ +VN Sbjct: 121 TRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVN 180 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIG---QLHNIQG 243 + A +T+ + + P LT N ++ +S++ K +++G +L Sbjct: 181 EHAKRTIRLPDPPL---PANL-TLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDP 236 Query: 244 RQLFLMAF-HQSHTSFSVANAPDEPHIEQL---VGECRVMRQLKRLISRIAPSPSSVMVV 299 R L+ F HQ + ++ + H + L +G + +LK + IA S S+V++ Sbjct: 237 RFARLVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIE 296 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+ ARAIHK S R ++PFIAINC AIP+ LLESELFGY+ GAFTGA ++G+ G Sbjct: 297 GESGTGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIG 356 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G LFLDEI MPL LQ KLLR ++ R I +G++ I +DIR+I+ATN NL++ Sbjct: 357 KFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSE 416 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 IA FR DL+YRL VIP +PPLRER ED+++L +F + R G I P ++ Sbjct: 417 LIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMD 476 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL---LNNGTTEQSDVTEVSEA 536 +L+ + WPGN+RE N +E++VN++P V+ +LPP L L EQ D Sbjct: 477 MLKSYPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLD------- 529 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 DD L E+E+Q I+ AL R S KK A+ LGIG+ATLYRKI+ Y L Sbjct: 530 --RQDDI--IPLSELERQAIQRALDRFGSTTGGKKLAAERLGIGLATLYRKIQLYGL 582 >UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMP1_ACIFE Length = 596 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/607 (37%), Positives = 358/607 (58%), Gaps = 43/607 (7%) Query: 7 QSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHV 66 +S L IQ T+ +A +++ + ++VE+VD+NL RVAGTG + + ++ + R V Sbjct: 9 RSRLRNIQRTVASYAGIISKIAGVDVEVVDDNLYRVAGTGMFAAGVDASMAQEGHVYRKV 68 Query: 67 LETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHI 126 LET +V+ Q + +C+GC + NC E+ L P++ + +GVI L+ + EQ+ HI Sbjct: 69 LETGKRRVIYQPGEELVCQGCPNFLNCPEEIELAMPILAEGHPIGVIGLVGSSREQKLHI 128 Query: 127 SDNLREFSDYVRHISTIFVSKLLEDQGPGDN---ISKIFATMIDNMDQGVLVVDDENRVQ 183 +N F + + I+ K +E + +S + AT+ +++ QG+L++ + RV Sbjct: 129 LENETLFLELIEQIADFISVKAMERERALQREALLSTLNATL-EHIQQGILILGKDFRVT 187 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG 243 N+ A++ L N+ G+ I F ++ + + S +G+ + + G Sbjct: 188 DCNRAAMEQLET--PNLAGERI----------FLEATGDNLAKYTEYSLTALGRQYRLMG 235 Query: 244 RQL----------FLMAFHQSHT----SFSVANAP--DEPHIEQLVGECRVMRQLKRLIS 287 L ++ F++S F A P D+ I +G +LK IS Sbjct: 236 TYLPVPQPTRDYQSVLIFYRSREIKERYFETAALPAVDKTSI---LGSSPATLKLKEEIS 292 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 ++A S S+V++ GESGTGKE+VA +I + S RR+K FIA+NCAAIPE ++ESELFGYVKG Sbjct: 293 KVARSTSTVLITGESGTGKEMVATSIWRESDRRDKRFIALNCAAIPESIMESELFGYVKG 352 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 AFTGA NG+ G + N G +FLDEIGDMPL LQ+KLLR ++ R+I+ IG++ + +D+ Sbjct: 353 AFTGADPNGRMGKFELTNEGVIFLDEIGDMPLYLQSKLLRVLQERKIVRIGSNQLMDIDV 412 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 R+I+ATN++L + + E +FREDL+YRL+VIP+ + PLRER EDIE L ++ R+ G Sbjct: 413 RVIAATNKDLKKMVREKRFREDLYYRLDVIPLRVAPLRERLEDIEDLTLFYSQRFARKFG 472 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 P + +V++ L+ +RWPGN+REL N +EY+VN++ +D ++LP + + G+ E Sbjct: 473 KKAPRLTEEVMDALKGYRWPGNVRELENAVEYMVNLMGEDGTLDVSMLPED-IRTGSREA 531 Query: 528 SDVTEVSEAHLSLDDAGGT-ALEEMEKQMIREAL---SRHNS-KKQVADELGIGIATLYR 582 + TE + AG +L E+EK IR+AL H + K A +LGIG+ATLYR Sbjct: 532 AAPTENGPGKQT--GAGQILSLRELEKNAIRQALLQCGNHTAGKAMAARKLGIGMATLYR 589 Query: 583 KIKKYEL 589 KI++Y L Sbjct: 590 KIQQYGL 596 >UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Peptococcaceae RepID=A4J154_DESRM Length = 593 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 213/598 (35%), Positives = 340/598 (56%), Gaps = 29/598 (4%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L++IQ T++++A ++A + +VE+VD +L RVAGTG + F+ +S R VL+ Sbjct: 4 ILLEIQETVEKYASIMAKISNFDVEVVDADLFRVAGTGIFAPFVNMDMSAEGYAYRQVLK 63 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 T +++ DP+C+ C + NC E+ + P++ + + +GVI L+ + + I Sbjct: 64 TGKLQIIYTPGRDPICQDCPKRHNCTEEIEIAMPILARGKTIGVIGLVGSSEWHRNTILQ 123 Query: 129 NLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 + + + I+ +K E DQ +++ + ID+M+QG+L++ + + N Sbjct: 124 DEGTYLGLIEQIANFIAAKATERIDQKKQESMLSALSCTIDHMEQGILILGSDRTITLAN 183 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH---NIQG 243 A K L + + G ++ P + N G ++++S +K I+G+++ + Sbjct: 184 YEARKQLKL--EILEGSQVKLTPTRDKIN---GQSEYLLSVAEKKTYILGEIYIPFKVDE 238 Query: 244 RQLFLMAF------HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 ++ F HQ + + A + ++G L+ I ++A S S+V+ Sbjct: 239 SYAEVLVFTRSKNLHQKMYALTAAISTG-----NIIGSSEETAALRMEIEKVANSASTVL 293 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKEV A AI + RR++ F+A+NCAAIPE LLESELFGYVKGAFTGA NG+ Sbjct: 294 ITGESGTGKEVAATAIWRAGNRRDQQFVALNCAAIPESLLESELFGYVKGAFTGADPNGR 353 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + AN G +FLDEIGDMPL LQAKLLR ++ R+I+ IG++ I VD+R+I+ATN++L Sbjct: 354 IGKFELANHGIVFLDEIGDMPLYLQAKLLRILQDRKIVRIGSNQLIPVDVRVIAATNKDL 413 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 IA+GKFREDL+YRLNVIP+ + PLR+RQ+DI L + F + R G I P Sbjct: 414 KSMIADGKFREDLYYRLNVIPLNILPLRQRQKDIPDLANLFAQRYATRFGKSQCRIPPQT 473 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN---GTTEQSDVTEVS 534 ++ L H W GN+REL N +E++VN+ ++D LP + L + + + Sbjct: 474 MDALLAHPWYGNVRELENTIEFMVNMSDEEGILDLDTLPRDFLEHQRRAAYKHDWSANPA 533 Query: 535 EAHLSLDDAGGT-ALEEMEKQMIREAL----SRHNSKKQVADELGIGIATLYRKIKKY 587 E L DA L+E+E++ I++AL KK A LGI +ATLYRK +++ Sbjct: 534 EGSLPPTDAQTVLPLKEVERREIQKALQLFGESTQGKKSAAKSLGISLATLYRKTEEF 591 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/593 (34%), Positives = 340/593 (57%), Gaps = 27/593 (4%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L+ I+ + R+ +++++L ++V +VD+N+ RV GTG Y G G+ + ++ LET Sbjct: 5 LLNIKEDVNRYINIISNLLNVDVGVVDKNMFRVTGTGLYKNIDGVYALGS--VYKNTLET 62 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 ++ R LC C K+NC+EK + TP+ +GV+ L+ EQ+ I N Sbjct: 63 GKTHIIENPRLHTLCTQCKDKKNCKEKLEISTPIYCHKEIIGVLGLVCFNDEQKNKILAN 122 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNI-----SKIFATMIDNMDQGVLVVDDENRVQF 184 + + + I+ K E Q +N+ T+++N+++GV+++D +N + Sbjct: 123 CESYLHFTKQIAEFIGIKFFEYQ---ENLLQKDQENTLKTILENINKGVIIIDKDNTIVS 179 Query: 185 VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ------L 238 +N A++ L + + +GK I + ++++ +S ++K ++G+ Sbjct: 180 INPIAIEKLNL-KFQCVGKKI---IIITQNDYLMNEEVFKLSINNKDFTVVGKKISLTSF 235 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 N + + + + + + + + G ++LK I +IA + S+V++ Sbjct: 236 DNRKNSAFIFEDIKKINENIAEITNNNVISLNDIYGNSEATKKLKENILKIADTSSTVLI 295 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE+VAR++H S R+NKPF+ INC+AIP+ LLESELFGYVKGAFTGA+ NG+ Sbjct: 296 TGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANNNGRI 355 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + ANTG +FLDEIGDMPL LQAK+LR I+ ++I IG++ I +DI+II+ATN NL Sbjct: 356 GKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATNVNLE 415 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + I E KFR DL+YRLNVIP L PLRER+EDI ++ + + R G I +V Sbjct: 416 EKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIISIDDEVK 475 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 + + WPGN+REL N++E + N+ + +++S+LLP N+ + +++ + Sbjct: 476 QAFLSYDWPGNVRELENVIELMFNISGNSSILNSSLLPENISKKSVSNPPKSSQIIIKNP 535 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKY 587 S D + +EK I + L + + KK +++++GIG+ TLYRK+K++ Sbjct: 536 SDDFEN---FDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLKRF 585 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 220/598 (36%), Positives = 341/598 (57%), Gaps = 34/598 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L +I ++Q + +ASV+ ++V IVD +L R+AGTG Y + +G ++ NS VL Sbjct: 3 LRKIVSSVQNVSEAIASVINVDVTIVDHHLNRIAGTGCYKEQVGEKVDENS-AFGFVLRQ 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 ++ R +C C++ NC E A + P+ ++D+ VGVI LIA EQ+ + N Sbjct: 62 GESLIIENPRQHDICLQCENVGNCMEYAEVCCPIKVKDQIVGVIGLIAFEEEQKTAMIGN 121 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNIS---KIFATMIDNMDQGVLVVDDENRVQFVN 186 + +++ ++ + SK++E Q D I K T++D++D+G++ VD ++ N Sbjct: 122 QKNLMEFLNKMADLISSKVIE-QESTDQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYN 180 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVS----WDDKSELIIGQL--HN 240 + A+ + +N + + I+ F+ N + + + + K + G + Sbjct: 181 KRAIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANP 240 Query: 241 IQ-GRQLFLMAFHQSHTSFSVANAPDEP------HIEQLVGECRVMRQLKRLISRIAPSP 293 I+ G + F + F S+ S + D + ++GE ++ ++K + A S Sbjct: 241 IRIGSENFGIVFTFSNISDVLGIINDMTTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSS 300 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE+ ARAIH S R KPFI INCAAIPEQLLESELFGY +GAFTGA Sbjct: 301 STVLIQGESGTGKELFARAIHFHSQRCKKPFIPINCAAIPEQLLESELFGYEEGAFTGAK 360 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 GK+G + AN GT+FLDEIGDMPL LQ KLLR ++ + I +G I +D RII+AT Sbjct: 361 RGGKSGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAAT 420 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N++L + EG+FR+DLFYR+NVIP+ +PPLR+R ED+ +LV Y L+ +LG + Sbjct: 421 NKDLENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEV 480 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 P V ++ ++WPGN+REL N +EY VN+ SG +I LP L T + + Sbjct: 481 HPGVFDVFMSYQWPGNVRELENTIEYAVNMC-SGSIIMERDLPKRLSRRQTESKDESFR- 538 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKY 587 G T+++E+E++ + +A++ + KQ A LGIG ATLYRK+K Y Sbjct: 539 ----------GITSIQELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLKIY 586 >UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium RepID=A5TW11_FUSNP Length = 571 Score = 360 bits (924), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 205/596 (34%), Positives = 335/596 (56%), Gaps = 58/596 (9%) Query: 17 IQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVT 76 +++++ +++ V+ ++VEI+D + R+AGTG + +G + S + VL+TK ++ Sbjct: 11 VKKYSEIVSKVINIDVEIMDSSFTRIAGTGTLKEKVGLNMKDESHIYHQVLKTKKTIIIF 70 Query: 77 QSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN------- 129 + R D C C K+ C+E+ + TP+I QD +GVI LI +++ + Sbjct: 71 EPREDTHCFTCQKKDLCKEELEISTPIIYQDEVIGVIGLICFEKDKKYDFIEKKDLYIQF 130 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTA 189 L + S ++ + +++S L Q DN +I + +I+ + +++ + +N ++ +N+ Sbjct: 131 LEQISKFISYKVYVYLSSL---QLKRDN--EILSNIINRVQDIIILTNRKNEIELINKKG 185 Query: 190 LKTLGVVQNN--IIGKPIRFRPLTFESNFTHGHMQ-----HIVSWD-DKSELIIGQL--- 238 LG + + II K E NF + + I ++ +KSE + L Sbjct: 186 QNILGSISEDEKIILKTSSNFLNQKEFNFLYSGKEISAIGDIFTFSLEKSEELTKTLFVF 245 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 I + +L++FH ++S + +P M+ + +S++A + +SV++ Sbjct: 246 KEISEFKNYLLSFH-GNSSIILLESPQ-------------MQDIYSHVSKVARNDTSVLI 291 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE++A+ IH LS N PFI +NC AIPE L+ESELFGY KGAFTGA GK Sbjct: 292 TGESGTGKEIIAKQIHDLSSYSNGPFITVNCGAIPESLMESELFGYTKGAFTGADPKGKI 351 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN GT+FLDEIG+MPL +Q K+LR ++ ++I PIG+ + Q+++RII+ATN+NL Sbjct: 352 GFFEKANNGTIFLDEIGEMPLQIQVKILRVLQDKKITPIGSRTEKQINVRIIAATNKNLE 411 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + + FR+DLFYRL+V PI +PPLRER++DI+ LV +F+ + I+ DV Sbjct: 412 EEVEKRNFRQDLFYRLSVFPIDIPPLRERKKDIKTLVEFFIKKYYISFQKEQKEISTDVY 471 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + ++ WPGN+REL N +EY +N++ E ID LPP L N ++ T Sbjct: 472 QHFLEYSWPGNIRELKNTIEYCMNMIEENEKTIDLKHLPPKFLGNKEKDEKIKT------ 525 Query: 538 LSLDDAGGTALEEMEKQMIREALSRH----NSKKQVADELGIGIATLYRKIKKYEL 589 L+E+EK+ I L + +KK +A LG+GIATLYRK+ Y L Sbjct: 526 ----------LKELEKEAISNLLKIYGNSSEAKKIIAKSLGVGIATLYRKLSSYNL 571 >UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6ANF6_DESPS Length = 600 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 213/594 (35%), Positives = 328/594 (55%), Gaps = 27/594 (4%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 VL+ +Q IQ +A ++ V EVE+VD NL R+AGTG Y K +G+ + LL+ L+ Sbjct: 19 VLLSLQKQIQYYADTISKVTGFEVEVVDTNLIRIAGTGDYSKNIGKSIKKAGNLLKATLK 78 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + + R + +C+GC +KE C E + P+ G + LI + E ++ + Sbjct: 79 STKPLFIENPRKNSICKGCQTKEQCHELLSICAPISDGKNTYGAMELICFSEEIRKKLIP 138 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM---IDNMDQGVLVVDDENRVQFV 185 + ++++ +++ + +LE N++ +F M I+ ++G ++ D +V F Sbjct: 139 QRDVYVNFLQLLTSSIAAHVLEKHAQ-KNLNDLFDAMSEVIEINNRGTMICDTNGKVVFK 197 Query: 186 NQTALKTL-GVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR 244 N A + L + +N + +TF + I+ D+ +L+ G+ + + Sbjct: 198 NARAQEILHKTLNSNFENFSLTATGVTFSD-----LDEFIIRQGDRQQLLAGKRVKLDSK 252 Query: 245 -----QLFLMAFHQSHTSFSVA-NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 +F+ QS S S ++P++ ++ ++G ++R LK I + + SSV++ Sbjct: 253 TSRFSSVFIFDTIQSVISLSSGPSSPEDASLQHIIGNSPLIRTLKSQIQATSDTNSSVLI 312 Query: 299 VGESGTGKEVVARAIHKLSGRRNK-PFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 GESGTGKE+VARAIH SG RNK PF+AINC AIP+ LLESELFGYV GAFTGAS G+ Sbjct: 313 SGESGTGKELVARAIH-FSGNRNKEPFVAINCGAIPDTLLESELFGYVGGAFTGASKQGQ 371 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A G +FLDEI MPL LQ KLLR ++ R I +GA++PI VDIRII+A N NL Sbjct: 372 IGKFELAAGGVIFLDEISSMPLYLQVKLLRVLQERTITRLGAANPISVDIRIIAACNDNL 431 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + + KFR DL+YRLNVIPI PPLR R ED+ LL+ +F + + ++ ++ Sbjct: 432 HEMMLQNKFRNDLYYRLNVIPIETPPLRNRMEDLTLLIKHFTNKYCDLFNKDQIFLSKNI 491 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + + K+ WPGN+REL N +EYLVN+ ID T + L N + + H Sbjct: 492 RQRMEKYLWPGNIRELENAIEYLVNIADKKGKIDETSIYSGFLVNPENLGTTIPLSPNNH 551 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKY 587 + L+E+E Q I A++ + K+Q A LGI +ATLYRK Y Sbjct: 552 PPV-----IPLKELEFQAITRAIALYGDSTEGKRQAAKSLGISLATLYRKTSTY 600 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 203/603 (33%), Positives = 324/603 (53%), Gaps = 39/603 (6%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ ++Q A +A+VL+++V I+D+N R+A TG Y KF+G ++ G + E Sbjct: 3 LNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEK 62 Query: 70 KTEKVV-----TQSRFDP-LCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 KT + + + +P +CE C++KE C E A +G P+I++D +GVI + +Q Sbjct: 63 KTNHIKRYLKDNEKKINPSVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQL 122 Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI------FATMIDNMDQGVLVVD 177 IS ++ +ST+ V ++ D I K+ +ID++ G++ VD Sbjct: 123 NMISKEFDSMITFLNRLSTLLVGNII----YYDTIKKLQIQTEETNHIIDSLSHGIMCVD 178 Query: 178 DENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF-----------THGHMQHIVS 226 + ++++N K L + + +++ I+ F HG + S Sbjct: 179 NNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNE---S 235 Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 + KS II + + F + ++ + + E ++G ++ +K + Sbjct: 236 FLIKSSPIIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIA 295 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 IA + S+V++ GESGTGKE+ ARAIH S R + PFIA+NCA+IP+ LLESE FGY Sbjct: 296 KNIAKTDSTVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEG 355 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAF+GA G+ G + AN GT+FLDEIGD+PL LQ K+LR ++ + IG I VD Sbjct: 356 GAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGKEEICVD 415 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 +RII+ATN++L + G+FR+DL+YRLNVIPI LP L++R EDI LL Y + R Sbjct: 416 VRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERS 475 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 ++ +V + +K+ WPGN+REL N++EY+VN +I + LP + + E Sbjct: 476 NLKIKQLSKEVKDSFKKYSWPGNIRELENVIEYIVNTTKEN-IIYNEHLPKSFKISKEDE 534 Query: 527 QSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 +S+ SL D + + M+ E K+++A EL I ++TLYRK+ K Sbjct: 535 KSNK--------SLQDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRKLNK 586 Query: 587 YEL 589 Y L Sbjct: 587 YNL 589 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 214/604 (35%), Positives = 331/604 (54%), Gaps = 59/604 (9%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 ++L +I+ +Q A + ++ ++V IVDE L R+AGTG + + +GR NS L Sbjct: 18 NILEEIKNDLQSIAETIKAITNVDVTIVDEKLKRIAGTGPFKEKIGRYAPKNS-AFEKAL 76 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T + + P+C C+ +NC+E+ L P+ ++ +G++ + + Sbjct: 77 KTGRQYFIVNPGKHPICASCEEHQNCKEELELCIPIRNGEKIIGILGMSIFDKNTKIDFL 136 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNI---SKIFATMIDNMDQGVLVVDDENRVQF 184 + +F ++ + S + +K+ E + G I S T+I+++++G++++D +NRV Sbjct: 137 NKQEDFKNFEKRFSELITTKINEKK-LGVMIEYRSSELMTLINSINEGIIILDSQNRVVT 195 Query: 185 VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ-- 242 VN+ + L V + P++ S F +Q + D + E+ ++ I+ Sbjct: 196 VNKYLKEKLNVSEKT----PVK-------SIFPVKLLQELEKKDFEGEVGPVEIKGIKFV 244 Query: 243 -------------GRQLFLMAFHQSHTSFSVANAPDE-PHIEQLVGECRVMRQLKRLISR 288 G L F + S A+ E + +VGE ++ K + Sbjct: 245 INSSPIAVKGQRVGTVLVFSDFSKMQESVYKASKMSEIVTFDDIVGESDAIKYAKSQAIQ 304 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 IA S V+++GESGTGKE+ ARAIH S R+N+ F+ INC AIPE L+ESELFGY KG+ Sbjct: 305 IADSEVPVLLLGESGTGKELFARAIHFQSSRKNEIFMPINCGAIPETLIESELFGYEKGS 364 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTGA+ GK G + A GT+FLDEIGD+PL +Q KLLRA+E +EI+ IG +PI+V+ R Sbjct: 365 FTGANVTGKIGKFELAKDGTIFLDEIGDLPLSMQVKLLRALEEKEIVRIGGYTPIKVNPR 424 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 IISAT+++L Q + EGKFREDLFYRLNV+PI +PPLRER DI +L +YFL + G Sbjct: 425 IISATHKDLYQMVLEGKFREDLFYRLNVVPIVIPPLRERGYDIIILANYFLEKFNKIYGK 484 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 G + + ++L + +PGN+REL NL+EY VN + T+ L+ T E+ Sbjct: 485 NIKGFSKESEKLLLSYPFPGNIRELRNLIEYAVNFESKDYISPETI--NQRLHRKTLEE- 541 Query: 529 DVTEVSEAHLSLDDAGGTALEEM----EKQMIREALSRHN----SKKQVADELGIGIATL 580 G L EM EK +I+E + R+ SKK +A +LGI IATL Sbjct: 542 ----------------GKTLAEMVKNYEKNVIKEYMLRYGSDVESKKLIAKKLGISIATL 585 Query: 581 YRKI 584 YRK+ Sbjct: 586 YRKM 589 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 210/608 (34%), Positives = 331/608 (54%), Gaps = 62/608 (10%) Query: 18 QRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLR-----HVLETKTE 72 Q+ A +A+VL++EVEI+D +L RVAGTG +G +RLLR HVL+T + Sbjct: 12 QKVAEAIATVLKVEVEIIDTDLVRVAGTGIVRYDVG------TRLLRGLVNKHVLQTGSH 65 Query: 73 KVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLRE 132 + ++ F +C C C KA + P+ ++ +G ISLIA Q+E + N Sbjct: 66 IFIREAGFHEICLSCPLTGRCFYKASIVYPITVESEVIGTISLIAFDVAQKETLCKNTDS 125 Query: 133 FSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFVNQTAL 190 +++ ++ + SK++E + + ++ ++D + +GV+ VD + + N++A Sbjct: 126 LIEFIGRMADLISSKVVEQEIMAERTVLANRLEAVVDAVGEGVMAVDRDGCITHFNRSAE 185 Query: 191 KTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA 250 + G + +IGK + + F S +Q + ++ K I N +GR+L L++ Sbjct: 186 RIFGAKKEQVIGKDSK---ILFPSLPLSSVLQDGIGFNSKEVFI-----NYEGRKLHLLS 237 Query: 251 ---------------------FHQSHT-SFSVANAPDEPHIEQLVGECRVMRQLKRLISR 288 F ++ ++ + N + + +VG + + ++K + Sbjct: 238 TAKPIKVKNGQVAGVVASFQDFKETQKLAYEIMNTHEMIGFDDIVGASKPLLEVKAKAKK 297 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 I+ S S+V++VGESGTGKE+ ARAIH +KPF+AINC A+PE LLE ELFGYV+GA Sbjct: 298 ISASNSNVLIVGESGTGKEIFARAIHSAGPYGHKPFVAINCGAMPENLLEIELFGYVEGA 357 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 F+GA GK G + AN GT+FLDE+G+M L LQ KLLR ++ R I +G + P+ V+IR Sbjct: 358 FSGARRGGKPGKFELANGGTIFLDEVGNMSLYLQTKLLRVLKERVIERVGGTRPVPVEIR 417 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 II+ATN +L + + + FR+DL+Y L+VIP+ +PPLR RQEDI LL+ +++ R LG Sbjct: 418 IIAATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPLRTRQEDIPLLLDFYMKRFNRLLGK 477 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 G + +E K+ WPGN+REL +EY VN + +I LPP + Sbjct: 478 DIKGFTDEAMEACIKYPWPGNVRELVYAVEYAVN-LEEEPLISPESLPPAIREGARKRTR 536 Query: 529 DVTEVSEAHLSLDDAGGT---ALEEMEKQMIREALSRHN----SKKQVADELGIGIATLY 581 D AGG L ++EK+ I AL ++ K + A LGI AT+Y Sbjct: 537 DGI-----------AGGGQLLQLAQLEKEAITAALEQYGWSDEGKTKAARALGISRATIY 585 Query: 582 RKIKKYEL 589 RKI+K++L Sbjct: 586 RKIQKFKL 593 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 212/600 (35%), Positives = 338/600 (56%), Gaps = 33/600 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ IQ A + SVL ++V IV++ L R+AGTG Y +G ++ + + + E Sbjct: 7 LEYIKSDIQNIAEAIVSVLNIDVTIVNKELFRIAGTGVYIDKIGEKVDKYTAFKKSLTEQ 66 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 T ++ + +C C C E A + P+I GVI LIA T EQ + I +N Sbjct: 67 IT-ILIDDPKSSDICRECYKSGACVEFAEVCCPIICDGVSHGVIGLIAFTKEQAQIIENN 125 Query: 130 LREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 +++ ++ + +KL + K T+++NMD+ V+ +D + ++ N Sbjct: 126 KSGLINFLGKMADLISNKLKAQIKTYELELEKKKLETLLNNMDKAVVSIDVDGKIDKYN- 184 Query: 188 TALKTLGVVQNNIIGKPIRFRPL---------TFESNFTHGHMQHIVSWDDKSELIIGQL 238 + K L ++++I GK I F L F+ + + +D K I ++ Sbjct: 185 SKFKELFNIKDSITGKNI-FVELDFIKKPSINNFKKDKSCSFFYKRYGYDSKGIYNINKI 243 Query: 239 ---HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 + ++G + + + +++ N +E ++GE +R K+ + S S+ Sbjct: 244 VLKNELKGYVIDFIDKRDAIKNYNKMNKDYRIKLENIIGESVAIRNSKKEALIASKSTST 303 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V++ GESGTGKE+ ARAIH S R + PFIA+NCAAIP+ LLESELFGY +GAFTGA Sbjct: 304 VLITGESGTGKELFARAIHNHSNRVDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKG 363 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 GK G+ + A+ G++FLDEIGDM L LQ+KLLR ++ +E+ IG+ S + +D+RII+ATN+ Sbjct: 364 GKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNK 423 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 +L + + G FREDL+YRLNVIPI LP LRER+EDI L++ + + ++++L I Sbjct: 424 DLEKMVQNGTFREDLYYRLNVIPIKLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDS 483 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 VV+ + +++WPGN+REL N++EY VN + S +I ++P + N T V E Sbjct: 484 RVVDAMMEYKWPGNIRELQNIIEYSVN-MSSSSIITMNVIPQKIKN---------TSVEE 533 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELLN 591 + D L+E+EK I +AL+++ K+ A LGI ATLYRKI+KY +++ Sbjct: 534 LEVKSDRI--IPLDELEKIEIIKALNKYKDYKKDKELTAKALGISRATLYRKIEKYNIIS 591 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 207/608 (34%), Positives = 341/608 (56%), Gaps = 61/608 (10%) Query: 17 IQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVT 76 +Q+ A ++ VL L+V IVD +L RVAGTG+Y +G +L S ++++ + Sbjct: 21 VQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLPPGSGY-EFSIKSRQATTIN 79 Query: 77 QSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDY 136 + + +C C K C+EKA + +P+ L + + +I + A T Q++ ++ ++ + Sbjct: 80 KPGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSF 139 Query: 137 VRHISTIFVSKLLEDQGPGDNI----SKIFA---TMIDNMDQGVLVVDDENRVQFVNQTA 189 ++ +S +LL D + I +K +A +++++ +G+L VDD N V N A Sbjct: 140 IKKMS-----ELLADSFSNEQIILEKTKAYAQVSAIVNSVYEGILAVDDYNEVIACND-A 193 Query: 190 LKTLGVVQNNIIGKPIR--FRPLTFESNFTHG-----HMQHIVSWDDKSELIIGQLHNIQ 242 ++ L ++ +IIG+ + L FE T G H Q+ S++ I L N++ Sbjct: 194 VRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYF------SKVGIHCLVNMK 247 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQL----------------VGECRVMRQLKRLI 286 ++ + +VA D IE+L + + +++LK Sbjct: 248 PIKM------NNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKA 301 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 +++ + S+V++ GESGTGKE+ ARAIH S R PF+ ++C AIPE LLESELFGY Sbjct: 302 KKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYES 361 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAFTGA GK G + A GT+FLDEIGDMP+ LQ KLLR ++ IG+ I++D Sbjct: 362 GAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIKID 421 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 +R+++AT+Q L +FI + KFR DLFYRLNV+P+ +P LRER+EDI LL+++FL+ + +L Sbjct: 422 VRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANKL 481 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 P ++ +++ L ++ WPGN+REL N+ EY +N+ G +D LP N+ Sbjct: 482 KREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKG-YLDLGDLPKNM------- 533 Query: 527 QSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYR 582 + + E + ++ D LEE+EK+ +A+ + K+ +A +LG+ AT+YR Sbjct: 534 KDKLLETQDYQKNVGDDEILPLEELEKRSFEKAVKIYGISEQGKQLMAGKLGVSRATVYR 593 Query: 583 KIKKYELL 590 K+KKY L+ Sbjct: 594 KLKKYGLI 601 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 212/593 (35%), Positives = 326/593 (54%), Gaps = 20/593 (3%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L IQ ++Q+ A +ASVL++EVEI D R+AGTG + R ++G + R L Sbjct: 3 LRDIQESVQQIASAVASVLRVEVEIADSQFLRIAGTGKNEAGVLRTMAGEDHIYRESLLA 62 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 V+ D C C NC E + P+ L + +GVI L+A EQ+E + + Sbjct: 63 GHPVVIMNPGQDERCRPCMHYGNCTETGEICCPIQLDNENIGVIGLLAFDEEQRERLFAD 122 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNISKI--FATMIDNMDQGVLVVDDENRVQFVNQ 187 + Y++ ++ + KL E + + + ++D MD+ V +VD +NR+ NQ Sbjct: 123 VDAILTYLQKMAELIAIKLKEHYLYVEQLHTVEKLRVVMDEMDKAVFLVDQDNRIIQANQ 182 Query: 188 TALKTLGVVQNNI-IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR-Q 245 A + L + ++ + I L + + V +DK+ L + + G + Sbjct: 183 RARQYLQLDHDDSQTAEWIDAIRLADAAQSAPKQVVLSVGQEDKTFLFAIKPILLAGTVK 242 Query: 246 LFLMAFHQSHTSFSVA---NAPDEPHIEQLVG-ECRVMRQLKRLISRIAPSPSSVMVVGE 301 +++ +A + EP +++G + Q K + R+A S S+V++ GE Sbjct: 243 EWVITLDDVQEVVQIARQVSGYSEPDPFRMIGGNSPAIVQAKEVARRVAASDSTVLLQGE 302 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+ A+AIH+ S RR++PF++INCAAIPE L+ESELFGY +G+FTGA GK GL Sbjct: 303 SGTGKELFAKAIHQASPRRDEPFLSINCAAIPEHLMESELFGYEEGSFTGARKGGKPGLF 362 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS-SPIQVDIRIISATNQNLAQF 420 + A GTLFLDEIGDM + LQ+KLLR ++ +E+ IG + PI++ RII+AT+ +L + Sbjct: 363 EVAGKGTLFLDEIGDMSMHLQSKLLRVLQEKELYRIGGNGKPIRLAARIIAATHLDLQER 422 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + G FR DL+YRL+VIPI LP LRER+EDI L + L H R+G G + + I Sbjct: 423 VDAGLFRLDLYYRLHVIPIHLPSLRERREDILPLANDILLAHANRVGKGLHGFSKETQNI 482 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL-LNNGTTEQSDVTEVSEAHLS 539 L H W GN+REL N++EY VN+ + S + P +L + G +S V E+ Sbjct: 483 LFHHDWRGNVRELENVIEYAVNMEAT-----SWVQPASLPIRTGRLRESSPHSVEESQGP 537 Query: 540 LD-DAGGTALEEMEKQMIREAL----SRHNSKKQVADELGIGIATLYRKIKKY 587 D G L+E+E+ I A+ R+ K++ A LGI ATL+RK+++Y Sbjct: 538 FDWQKQGLLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREY 590 >UniRef50_C5EGG3 Signal-transduction and transcriptional-control protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGG3_9FIRM Length = 585 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 181/593 (30%), Positives = 322/593 (54%), Gaps = 36/593 (6%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L +IQ T+ +A +LA +L+++V IV+ + R+AGTG K + +S +L+ + Sbjct: 17 ILDEIQDTVILYANILAQILKIDVTIVNSSFKRIAGTGRLIKEINTDMSEEGHILKKAMV 76 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + ++V + + +C C S+E+CRE + TPV+++ + +GVI +Q+ H Sbjct: 77 SGETQIVNEPGKNEICRDCHSREHCRETFHMSTPVMIKGQAIGVICFTCFNQKQRSHALK 136 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNIS--KIFATMIDNMDQGVLVVDDENRVQFVN 186 N F +++ + + +K E N++ ++ T++D +D GV+V+D N V N Sbjct: 137 NQEIFKQFLQQFADLISAKAQEALENKKNLAMKELLETIVDRLDAGVIVMDQHNLVVQTN 196 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI--QGR 244 + + L + + ++ P+R P NF G ++ ++ S ++G++ + +GR Sbjct: 197 RMCCQILKMREGDLFTVPVRLAP---TGNFVGGLDEYRLTAGQSSYRLVGKVFELDTEGR 253 Query: 245 QLFLMAFHQSH----TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 F + F+Q+ S +A + +E++ G ++ +K+ + R+ SPS V+++G Sbjct: 254 MTFFL-FNQAERTLKDSLGLAGKRERSGLERIDGNSPQIQAVKQEMLRMVNSPSPVLILG 312 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 E GT K A AIH+ R + +NC +P+ + ELFG + A ++ GK G Sbjct: 313 EKGTEKTKFAMAIHEEGERAGEMVCTVNCETMPQSQIGRELFGTARTA----ASKGKAGK 368 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 ++AA+ GTL L+E+ ++P +Q +L ++++ ++ GA +V+ RII ++ NL + Sbjct: 369 LEAASKGTLILEEVENLPYDVQLRLGEFLDSQLVVRQGALKGARVNTRIICTSSVNLGEL 428 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + +G+F +YR+N++P+ +PPLRER+ DI LL +L + R + I+ Sbjct: 429 VEQGRFLPAFYYRINILPLYIPPLRERKGDINLLAQKYLQRYARSMNKNIQTISDGFYAC 488 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 +R++ WPGN EL N MEY N++ +ID LLP NL T V +A L Sbjct: 489 IRQYGWPGNKWELRNAMEYAANMMKLDGMIDIGLLPANLR----------TGVMQAEDDL 538 Query: 541 DDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 + LE MEK+MI +A+SR+ + KK+ A LGIG+ATLYRK+ KY L Sbjct: 539 N------LESMEKRMIEKAVSRYGTSVEAKKKAAGALGIGMATLYRKLDKYGL 585 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 200/594 (33%), Positives = 307/594 (51%), Gaps = 43/594 (7%) Query: 14 QPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEK 73 +P I++ ++ +L ++ +++E V T Y K G + S + VL K + Sbjct: 8 KPAIEKVITSISDILNVDAAVINERGHLVVSTERYLKQKGENVHVPS--IEFVL-AKGQY 64 Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREF 133 VV + +C+GC ++C K L + + + + +GV+SL + T E Q +S + + Sbjct: 65 VVDKPGSMEMCKGCRFLDSCPAKVELLSSIKVANHAIGVVSLTSFTKEGQNRLSKHTERY 124 Query: 134 SDYVRHIS----TIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTA 189 + +S I S D+ ++ +D + D V N +A Sbjct: 125 QQILTEVSEMITAIVQSHATRQTESSDDSMRLLEGALDTVADAYFTFDRSGNVIHTNASA 184 Query: 190 LKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDK------------SELIIGQ 237 + L Q++++ + L S T + DK + +IG Sbjct: 185 RRLLS--QHDLLPAEVSRMLLPSLSGLTAHSLPIANCLVDKLDAPTEATPIIVNNQLIGG 242 Query: 238 LHNIQGRQLFL--MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 + +Q L + + HQ S A++ + Q+VG ++Q+K + +I S S+ Sbjct: 243 VLRVQRGSLTVPRLMDHQGSRSPGKADS-----LAQIVGNSPAIKQVKEMAMKIGNSNST 297 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V++ GE+GTGK +A+AIH+ S R PF+AINCA+IPE L ESELFGY GAFTGA Sbjct: 298 VLITGETGTGKGHLAKAIHEASTRAYSPFVAINCASIPENLFESELFGYEDGAFTGAKKG 357 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 GK G + A GTLFLDEIGDMPL LQAKLLR ++ + + IG + + +RII+ATNQ Sbjct: 358 GKPGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQ 417 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 NL + + + FR DL+YRLNVIPI +P L ER+EDIELL F+ + + G + GIA Sbjct: 418 NLEELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAGRTFFGIAR 477 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 + + +L + WPGN+REL N +EY +N + V+ + LPP L S + Sbjct: 478 EAINLLTHYHWPGNVRELENAIEYAMN-MEQDTVLTADSLPPRLRARPLVAPSHSGPAIK 536 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIK 585 ++ DA A IR +L +H S K++VA+ELGIG+ TLYRK+K Sbjct: 537 VRVA--DAQADA--------IRASLQKHGSDLKGKQRVAEELGIGLRTLYRKLK 580 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 175/534 (32%), Positives = 302/534 (56%), Gaps = 38/534 (7%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQL-SGNSRLLRHV 66 S + +I+ IQ +S+++ ++ ++D +L RVA TG + + +G+ L G + +V Sbjct: 3 SAMYEIREFIQNLIETTSSIIEFDIYVMDSHLVRVAATGLFKESIGQALPKGCAN--DYV 60 Query: 67 LETKTEKVVTQSRFDPLCEGCDSKE--NCREKAFLGTPVILQDRCVGVISLIAVTHEQQE 124 +E ++ + + +C+ C K C + + P+ +C+G I+++++T + +E Sbjct: 61 IENGEVLIIDSPKGNKICDTCPIKTYGKCFNEYSIAYPIKNDGKCIGAITIMSLTSKLKE 120 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 + ++ ++ ++K+ E + I T+++++ +GV++ + Sbjct: 121 KQVKIRSQLITFLERLAESILTKIKEKETKDRLI-----TVLNSISEGVVLTSSSGEILV 175 Query: 185 VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELI---------- 234 N + ++ + +NNI + + E NF + + + E+I Sbjct: 176 FN-SVMEEILKHKNNI-------KEIFVEDNFENIISDFKEEAEKELEVILRAPIPNNRM 227 Query: 235 ---IGQLHNIQGRQ--LFLMAFHQSHTSFSVANAPDEPH----IEQLVGECRVMRQLKRL 285 + ++N + LF+ + T+ + D H ++ + G +++ Q K L Sbjct: 228 FVSVKFINNSNEKTDILFIFKHKKELTNIAYKLLADASHLNINLDSIKGNSKLINQTKNL 287 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 ++ A S+++++GESGTGKEV ARAIHK+S R+++PFIAINCAAIPE LLESELFGY Sbjct: 288 ATQAAKYESNILILGESGTGKEVFARAIHKMSKRKDEPFIAINCAAIPENLLESELFGYE 347 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 GAFTGA+ GK G + AN GT+FLDE+GD+ L LQ KLLR IE ++ +G I++ Sbjct: 348 SGAFTGANKGGKPGKFELANGGTIFLDEVGDLSLHLQPKLLRVIEQGQLERVGGVKSIKL 407 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+RIISATN++L + +G+FRED FYRL VIPI +PPLR+R EDI LL +FL + ++ Sbjct: 408 DVRIISATNKDLETMVKKGEFREDFFYRLCVIPIMIPPLRKRLEDIILLAEHFLDKYNKK 467 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL 519 L GI+ +V + L + WPGN+REL N++EY VN + + +V+ + +P + Sbjct: 468 LNKNIVGISEEVKKQLLLYDWPGNVRELENVVEYSVN-MENKDVLTLSCIPKKI 520 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 188/522 (36%), Positives = 294/522 (56%), Gaps = 73/522 (13%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 TP+ + R VG +++ E E IS+ L ++ R IS + Sbjct: 206 TPIFMGGRIVGATAVLQDISEL-EAISNEL----EHTRRISM--------------ELDA 246 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG-------------KPIRF 207 I + D G+ V D E R VN+ +T G+ + +++G + + Sbjct: 247 IIESSFD----GIYVTDGEGRTLRVNKAYERTTGIRREDVVGHTMAELVEQGFFNESVSM 302 Query: 208 RPLTFESNFTHGHMQHIVS-----------WDDKSELI--------IGQLHNIQ---GRQ 245 R L E+ +Q + + +DDK E+ + +L+N+Q GR Sbjct: 303 RVL--ENRKGESLVQKVKTGKTVMVTGTPIFDDKGEISLVVTNVRDVTELYNLQNELGRM 360 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 L ++++ +A P + V + M+++ L R+A ++V+V GESG G Sbjct: 361 EVLRTWYENELEQLRESAGAAPSV---VIRSKKMKEVHELAMRLARVDATVLVQGESGVG 417 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE+ A IH S R++KPF+ I+CAAIPEQLLESELFGY GAFTGA A GK G+ ++A+ Sbjct: 418 KEIFADLIHTNSPRKDKPFVKISCAAIPEQLLESELFGYEAGAFTGAKAKGKAGIFESAD 477 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 GT+FLDEIG+MPL LQAKLLR ++ ++I+ +GA+ + VDIRI++ATN++L+Q + +G Sbjct: 478 GGTIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSMDVDIRILAATNRDLSQMVHKGA 537 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FR DL++RLNV+P+ +PPLRER+E I ++FL + R+ G IAPDV++IL + Sbjct: 538 FRNDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYNRKYG-FAKQIAPDVLDILYDYD 596 Query: 486 WPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG 545 WPGN+REL N +E +V VV G+VI+ LP L +S + AH + Sbjct: 597 WPGNVRELENTVERMV-VVTKGDVIEPADLPEKLR---IAPKSGL-----AHALGGGSLK 647 Query: 546 TALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 +ALE +E++++++AL H S +VA LG+ +T+ RK+++Y Sbjct: 648 SALEGLEREILQQALETHGSTHKVAKALGVNQSTVVRKLQRY 689 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 293 bits (751), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 150/323 (46%), Positives = 215/323 (66%), Gaps = 2/323 (0%) Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P ++G+ ++++ +I ++A S S+V++ GESGTGKE+ A +IH+LS R + PF+A Sbjct: 246 PVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVA 305 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIPE LLESELFGY +G+FTGA GK G ++ AN GTLFLDEIGDMPL LQAKLL Sbjct: 306 INCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLL 365 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R I+ + I P+G S P+ +++R+I+AT++NL + I G FREDLF+RLNVIPI +PPLR+ Sbjct: 366 RVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQ 425 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R ED ELL+HY+L + L + ++ ++ L K+ WPGN+REL NL+EYLVN+ + Sbjct: 426 RPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLVNIH-N 484 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 ++I LP + E++ + + G + QM+ + K Sbjct: 485 QDIISPEDLPIT-IQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHTDGK 543 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 K+ A LG+ +ATLYR+IKKY+L Sbjct: 544 KKAAAALGVSLATLYRRIKKYKL 566 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/449 (36%), Positives = 264/449 (58%), Gaps = 39/449 (8%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR----------------- 206 +ID +D GV+ V+ ++ N K +++II K IR Sbjct: 87 AIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDIIDKDIRTVLEDPLIIDLIKSGKD 146 Query: 207 FRPLTFESNFTHGHMQHI---VSWDDKSELIIGQLHNIQG-RQLFLMAFHQSHTSFSVAN 262 ++ + + N G +Q++ ++ D S IG + +I +++ +A SV + Sbjct: 147 YKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVSSITDIKKVIELA--------SVVS 198 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 D+ ++G + ++ +K ++ ++ S S+V++ GESGTGKE+ ARAI +LS R++K Sbjct: 199 KMDKEAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGKELFARAIQRLSNRKDK 258 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 F+ +NCAA+PE L+ESELFGYVKG+FTGA+ NGK GL + AN GT+FLDEIG++ ++LQ Sbjct: 259 RFVILNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANEGTIFLDEIGELSMVLQ 318 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ + IG+ + +VD+RII+ATN+NL + + +G+FREDL+YRLNVIPI +P Sbjct: 319 AKLLRVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEFREDLYYRLNVIPIFIP 378 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 LRER EDI +V +F+ +L G+ D ++ L K+ WPGN+REL N++E +N Sbjct: 379 SLRERMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNWPGNIRELQNVVERAMN 438 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA-HLSLDDAGGTALEEMEKQMIREALS 561 + L +L+ N + EV EA L L D +E EK+ I +AL Sbjct: 439 LCDG-----KLLTKKHLMINSYINPISLDEVKEASDLKLKD----IVEACEKEAIIKALK 489 Query: 562 RHNSKKQVADELGIGIATLYRKIKKYELL 590 ++ + ++ A LG+ T+ KIKKY ++ Sbjct: 490 KNKTFRKTAKVLGVSHTTIINKIKKYNIV 518 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 147/324 (45%), Positives = 221/324 (68%), Gaps = 7/324 (2%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 ++ ++G + LK + +IA S S+V++ GESGTGKEV+A++IH+LS R PF+AIN Sbjct: 140 LDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFVAIN 199 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAAIPE LLESELFGY +GAFTGA GK G + A GTLFLDEIGDMPL LQAKLLR Sbjct: 200 CAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKLLRV 259 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ R I +G + I+VD+RII+AT+++L IA +FREDL++RLNVIP+ +PPLRER+ Sbjct: 260 LQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLRERK 319 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 ED+ L+ Y+++ +RLG + ++ + + WPGN+REL N++EY+VN + G+ Sbjct: 320 EDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIRELENMVEYIVN-LEIGD 378 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT--ALEEMEKQMIREALSRHNS- 565 ++ + LP ++ ++ D+ E + ++ + + E+E+Q+I +AL R + Sbjct: 379 LVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQALQRFGTS 438 Query: 566 ---KKQVADELGIGIATLYRKIKK 586 K++ A+ LGI +ATLYRK++K Sbjct: 439 TEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 249/460 (54%), Gaps = 43/460 (9%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK------PIRFRPLT 211 I++ F +++N + VD+ + ++N +K V +++IGK P R Sbjct: 220 INEKFTKILENSQDMICFVDENGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKV 279 Query: 212 FESN----------------------FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM 249 F+ F G + ++S LI + + + L Sbjct: 280 FKEKTLLKDVIHKKNGINVISTIDPLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELD 339 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + N+ ++G R ++ + + + + + S+V++ GESGTGKE++ Sbjct: 340 YYKNEFLRQLSKNS----SFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELI 395 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+AIH S R+NKPF+ +NCA+IPE LLESELFGY KGAFTGA K G A+TGT+ Sbjct: 396 AKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGA-VQSKPGKFAIADTGTI 454 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGDMPL +Q KLLR ++ REI +G +P +D+R+I+ATN+NL + I +G FRED Sbjct: 455 FLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFRED 514 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+ I LPPLRER+EDI L +F+ ++L GI D + +L ++ WPGN Sbjct: 515 LYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGN 574 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N+ME +N+ G+ IDS+ LP L E +L++D E Sbjct: 575 IRELENIMERAINLC-DGDYIDSSYLPSYL---------KPVESKSFNLNIDIDHILPFE 624 Query: 550 EMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 E EKQ+I A+ ++ S + LG+ T+ K KKY + Sbjct: 625 EYEKQIIEAAMKKYKSFNKAGKALGLTHRTVSLKCKKYNI 664 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 226/342 (66%), Gaps = 12/342 (3%) Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 L + + +S +A+ + +++ + M +L L++++AP+ S++++ GE+G GK Sbjct: 242 LLQKYEEELSSLRIAHLKNS----EIIYRSKQMERLIELVNKVAPTESTILIYGETGVGK 297 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 EV+A+ IH +S R PFI INC AIPE LLE+ELFGY KGAFTGA + GK GLI+ A+ Sbjct: 298 EVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADK 356 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTL LDEI ++PL LQ KLLR ++ +E + +G PI+VD+RII+A+N++L + + EGKF Sbjct: 357 GTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKF 416 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DL+YRLNV+P+T+PPLRER +DI +L ++FL+++ + G + +V+EI K+ W Sbjct: 417 RQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHS-KQLTNEVMEIFMKYPW 475 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E +V ++ + I LP LLN T S VS + L +A Sbjct: 476 PGNVRELENVIERIV-IISENDQITKKDLPGELLNQEETNHSFGVHVSRL-MPLKEASAL 533 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 +E Q+I++A+ S + A+ LG+ +T+ RK+KKYE Sbjct: 534 ----VEYQLIKQAIEECGSSYKAAEVLGVDQSTIIRKLKKYE 571 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 265/458 (57%), Gaps = 55/458 (12%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 T+ID G LVV+ E V +N+ + + + + IG+ I+ + E+ H Sbjct: 151 TIIDTGHDGYLVVNKEGYVITLNKAYAELIDINPEDAIGRHIK--EVIPETEL------H 202 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAF------------------------HQSHTSFS 259 +VS K++ IG++ ++GR+ +M + + T +S Sbjct: 203 LVSQTGKTQ--IGEVLRVKGREAVVMRYPINKDGRIIGAVSKVMFRDVNQFITSAKTVYS 260 Query: 260 ----VANAPDEPH-----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + P++ ++ L+G+ M +LK + R+A PS+V++ GESGTGKE++A Sbjct: 261 SQRRIKGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLA 320 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 ++H S R PF+ +NCAA+PE LLESELFGYV+GAFTGA G+ G + AN GT+F Sbjct: 321 HSLHVGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIF 380 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGDMPL++QAKLLR ++ +EI +G + V++R+++ATN+ L Q IA+ FREDL Sbjct: 381 LDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDL 440 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRLNV+ + +P LRER +D++ LV YFL + G G++ D +E+ + WPGN+ Sbjct: 441 YYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNV 500 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++E N+V G +ID LPP L G +++ S++ + + LE+ Sbjct: 501 RELENVVERAFNLV-DGHIIDVMHLPPYLQKFGKSKRH----------SINKSLPSLLEQ 549 Query: 551 MEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKY 587 +EK+ I +ALS N K Q A LGI A LY+KI +Y Sbjct: 550 VEKEAIADALSVTNGNKMQAAKILGISRAWLYKKIAQY 587 >UniRef50_B6WWU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWU2_9DELT Length = 567 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 184/523 (35%), Positives = 280/523 (53%), Gaps = 53/523 (10%) Query: 99 LGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIF-VSKLLEDQGPGDN 157 L P +L+ R I L + +I D+ + D V +S I V K+ ED Sbjct: 52 LSLPKVLEARDATEIKLRKLNIADHTYIIDSFFDGEDLVILLSDITDVKKMAEDLSQQFT 111 Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL---TFES 214 F + + G++V D RV F+N T + + ++ L F Sbjct: 112 HLLRFKMSMQCITDGIVVADAFERVVFMNATMHDIISSQHKKYDVRTLKDLELLLGIFSE 171 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQL---------FLMAFHQS--------HTS 257 N + D+K+ GQ + R+L FL+ F S Sbjct: 172 NEEGASLSESSYRDEKT----GQTFLAEKRKLMISGERLHGFLIYFSAVSAEEGKPLKNS 227 Query: 258 FSVANAP---------------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 A P ++P I+ VG+ + + ++K +I ++APS S+V++ ES Sbjct: 228 LKTAQTPLSELRYPPAGNRKGAEKPSIQSFVGQSKSVLRIKAIIKKVAPSSSTVLLQSES 287 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE++AR++H+LS R + PFI +NCA++PE LLE+E+FGY GAFTGA +G GL + Sbjct: 288 GTGKELLARSLHELSERADGPFIKLNCASLPESLLEAEVFGYDSGAFTGAKKSGNPGLFE 347 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A+TGT+FLDE+G+M L LQAKLLR I+ RE+ IG S Q+D+RI++ATN++L Q + Sbjct: 348 QAHTGTIFLDELGEMSLSLQAKLLRIIQEREVQRIGGQSSKQLDVRIVAATNRDLLQLVK 407 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 +G+FR DL +RLNV+ IT+PPLRER+EDI+ L+ YFL L+++ G++ +V + Sbjct: 408 QGRFRSDLLFRLNVVSITIPPLRERKEDIKSLIIYFLRLYSQIFKKNISGVSKEVYYLFM 467 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+RELSN++EY N++ G +I+S LP LL+ T S +LDD Sbjct: 468 NYDWPGNVRELSNIIEYAFNII-DGNIIESRHLPQYLLDASTYP-------SGGSRTLDD 519 Query: 543 AGGTALEEMEKQMIREALSRHNSKKQVAD-ELGIGIATLYRKI 584 + + + + ++L +H K +A LGI A LYR I Sbjct: 520 ----MMADYAFKAVMDSLEQHKGNKALAALSLGISRAKLYRII 558 >UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regulator n=5 Tax=Clostridiales RepID=C9XJV7_CLODC Length = 346 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/336 (45%), Positives = 220/336 (65%), Gaps = 7/336 (2%) Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 + V N ++ ++GE VMR LK I +I S S+V + GESGTGKE++ARAIH Sbjct: 10 YGGMEVYNIWGTTTVDSIIGESDVMRALKNRICKIGNSDSTVAITGESGTGKELIARAIH 69 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 R NK F+AINCAAIPE LLESELFGY KGAF+GA + GK G + AN G +FLDEI Sbjct: 70 LAGNRGNKTFVAINCAAIPEPLLESELFGYTKGAFSGADSKGKIGKFELANGGVVFLDEI 129 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GDMP+ LQ+KLLR ++ ++ IG++ I +D+RIISATN++L + + E KFREDL+YRL Sbjct: 130 GDMPIQLQSKLLRVLQEKKFTRIGSNELIDIDVRIISATNRDLFELVKENKFREDLYYRL 189 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NVIP+ +PPLRER +DI++L++ F+ ++R++ I PDV ++L K+ WPGN+REL Sbjct: 190 NVIPLEVPPLRERGDDIQILINNFIDKYSRKMKKNVYHIEPDVEQMLLKYPWPGNIRELE 249 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT--EVSEAHLSLDDAGGTALEEME 552 N +E +N++ +I ++ +L ++ E S+ +S++ T LEE E Sbjct: 250 NTIELALNLLEEDGIIHKGIINRKILEYFKLNNINIKLLEESDYEISMEQDILT-LEEFE 308 Query: 553 KQMIREALSRHNSK----KQVADELGIGIATLYRKI 584 + I++ L + + K A +LGI +ATLYRKI Sbjct: 309 RAYIKKVLKFYGNDTKSKKLAAKKLGISLATLYRKI 344 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 177/462 (38%), Positives = 264/462 (57%), Gaps = 41/462 (8%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFT 217 +++ F T+++ + G++VVD++ ++ VNQ L + +IGKPI SN Sbjct: 145 LNETFDTVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPI---AEIMSSNQL 201 Query: 218 H-------GHMQHIVSWDDKSELII-------GQLHNIQGRQLF------------LMAF 251 H +++ K ++ G++ G+ +F + Sbjct: 202 HHVACTGLSQTSEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCL 261 Query: 252 HQSHTSFS---VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 T F N + ++ +V E M++LK IS +A S S+V++ GESGTGKE Sbjct: 262 EHKVTFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEG 321 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VA AIH S R PFI +NCA+IPE L+ESE+FGYV GAFTGA+ NGK G I+ A+ GT Sbjct: 322 VAHAIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGT 381 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIG+MPL LQAKLLR ++ REI +G++ I+V+IRI++ATN+ L+ IA+G+FR+ Sbjct: 382 LFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQ 441 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNVI + LPPLRER EDIE L H+F+ L + GI P+ + L ++ WPG Sbjct: 442 DLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPG 501 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N++E VN SG +I+ LP +++ T + + + H L Sbjct: 502 NIRELENVVERAVNYTRSG-LIELIHLPHQIISGNTALGQVMNKKTIRHQD-------RL 553 Query: 549 EEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 ++E+ MI AL + +K + A L + + LY K+ KY+L Sbjct: 554 GQIERDMIAAALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDL 595 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/311 (47%), Positives = 210/311 (67%), Gaps = 8/311 (2%) Query: 281 QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340 ++K L+ +IA + S+V++ GESGTGKE+ AR IH LS R+N PFIAINCAAIP+ LLESE Sbjct: 221 EIKDLVRQIAVTDSTVLLQGESGTGKELFARYIHYLSPRKNHPFIAINCAAIPDNLLESE 280 Query: 341 LFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS 400 LFGY G+FTGA GK G + AN GT+FLDEIGDMPL LQAKLLR +E R++ IGA+ Sbjct: 281 LFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQLQAKLLRVLENRQVERIGAT 340 Query: 401 SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460 +D+RII+ATN++L + I FREDLF+RLNV P+ +PPLRER++DI LL+ ++L Sbjct: 341 VSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLRERRDDILLLLDFYLK 400 Query: 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL 520 + +P+ +EIL+ + WPGN+REL N++ Y V++ G++I LP L Sbjct: 401 NICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSIC-KGDIITLHYLPKYLQ 459 Query: 521 NNGTTEQSDVTEVSEAH--LSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIA 578 N ++ +S EV H + +D L++ + ++ + + SKK +A ELGI +A Sbjct: 460 NGLSSTKSQFGEVKTTHPIIQVDQ-----LKDQLEILLAKYGNSTQSKKLIAQELGISLA 514 Query: 579 TLYRKIKKYEL 589 TLYR ++KY L Sbjct: 515 TLYRWLRKYHL 525 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 149/321 (46%), Positives = 210/321 (65%), Gaps = 12/321 (3%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++LVGE +++LK LI+++AP ++V++ GE+GTGKE+ A+ IHK SGR +PF+AINC Sbjct: 143 DELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKELAAKLIHKWSGRHKQPFLAINC 202 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 A+PE LLESELFG+VKGAFTGA + K GL + + GTLFLDEI M L Q KLLR + Sbjct: 203 GALPETLLESELFGHVKGAFTGADQD-KPGLFETVDQGTLFLDEIDSMTLNFQVKLLRVL 261 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + L +G P + D+R+I+A+++ L++ +A G FR DLFYRLNV+ + LPPLR+R+E Sbjct: 262 QEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRRDLFYRLNVVSLELPPLRQRRE 321 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LL H+FL + + I V+ L H WPGN+REL N +E + P G+ Sbjct: 322 DIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPGNVRELENAVERALLFCP-GQE 380 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK-Q 568 + + LPP L G E +E H + DDA + MEK++I +AL R N + + Sbjct: 381 LQAEHLPP--LETGGEE-------AELHTTADDAKSLTMASMEKKLIIKALQRANGHRGK 431 Query: 569 VADELGIGIATLYRKIKKYEL 589 A+ LGI A+L+RKIKKYE+ Sbjct: 432 TAELLGISPASLWRKIKKYEI 452 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 212/323 (65%), Gaps = 4/323 (1%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E L+G+ MR + +L+ ++ S ++V++ GESGTGKE+VARAIH S R++KPF+A+ Sbjct: 144 QFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAV 203 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC+A+ E LLESELFG+VKG+FTGA+ N K GL +AA+ GT+FLDEIGD+P Q +LLR Sbjct: 204 NCSALTETLLESELFGHVKGSFTGATGN-KKGLFEAADGGTIFLDEIGDVPPATQVRLLR 262 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ E+ +GA+ P++VD+R+I+AT+ +L++ +GKFREDLFYRLNVI I LPPLR+R Sbjct: 263 VLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDR 322 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 ED+ LL H+FL L+ + GI+P +E L +RW GN+REL N++E V V+ Sbjct: 323 PEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAV-VLTGN 381 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK- 566 EVID LPP + S V S AHL A A+ E++ + L ++N Sbjct: 382 EVIDVEDLPPG-FQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQNV 440 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 A G+ + R +K+YE+ Sbjct: 441 SSAARAAGVDRSNFRRLLKQYEV 463 >UniRef50_UPI000197326E probable transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197326E Length = 573 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 197/595 (33%), Positives = 318/595 (53%), Gaps = 40/595 (6%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L ++ ++ F A ++E + D T Y K G + + ++ V+ Sbjct: 4 LEDMRSAVEHFVSAAAEAFRVEAAVFDNESNLFFCTPTYLKKKGNAV--HYAFIQDVI-V 60 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 +VT+ P C GC E+C + + GVIS A T E Q+ +S + Sbjct: 61 NGNVLVTEPGKMPACIGCRFNEHCPATMEILCCIHSGTEVAGVISFTAFTKEGQKRVSAH 120 Query: 130 LREFSDYVRHISTI---FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 + + + +S++ ++ +L +D D I+ I ++ +Q +L+ D V N Sbjct: 121 TDIYLNAITKLSSLIGEYLQQLSDDGSAADTINLI-ENLMALYEQPLLLTDPNGVVLRYN 179 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDD--KSELIIGQ-LHNIQG 243 A K L N+ +R F+ + I S +D + ++ IG+ + Sbjct: 180 SLAAKILKFC--NVSATSLR-------QIFSEDTARKITSGNDLYEKKVSIGENTAKVTT 230 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIE-----QLVGECRVMRQLKRLISRIAPSPSSVMV 298 R ++ H ++N E E +L+G + ++++I R+A SP+ +++ Sbjct: 231 RSIY-SGDHIHSILVRISNEFYESQAESGSFQKLIGSSKEFSHIQKMIKRVADSPTPILI 289 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GE+GTGKE+VAR+IH+ S R PF+AINC++IPE L ESELFGY +G+FTGA GK Sbjct: 290 TGETGTGKELVARSIHEQSRRAKYPFVAINCSSIPENLFESELFGYEEGSFTGAKKGGKM 349 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G I+ A GTLFLDE+G+MPL +Q KLLR ++ E+ +G++ I +DIRI++ATN++LA Sbjct: 350 GKIELAQGGTLFLDELGEMPLSVQPKLLRVLQEYELERVGSTKKIHLDIRIVAATNRDLA 409 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 I EGKFREDLFYR++VI I LPPLRER++DI + +L L R+ + I+ + Sbjct: 410 DMIKEGKFREDLFYRISVINIKLPPLRERKDDIIPISKNYLELLHSRMSTPLRKISSEAE 469 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++ + WPGN+REL N++EY N+ G+ ++ + LP +L++ E S+ E AHL Sbjct: 470 KLFLNYPWPGNIRELQNVIEYAANLC-DGDTLNPSDLPEHLISRLNLEFSEKQEPRSAHL 528 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + EKQ I+E L+ + KK++A LGI + TLYRK+ + +L Sbjct: 529 P---------DSQEKQ-IQELLATYGHTLEGKKRIAAALGISLRTLYRKLNQMQL 573 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/318 (45%), Positives = 212/318 (66%), Gaps = 8/318 (2%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E LV MR L ++ R+A S+V++ GESGTGKE++A IH S RR+KPFI +NC Sbjct: 382 ENLVVTSAKMRNLLDMVVRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNC 441 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE LLESELFGY GAFTGA GK+G I+ A+ GTLFLDEIG+MPL LQ K+LR + Sbjct: 442 GAIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFL 501 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +EI+ +G ++ I VD+RI++ATN+NL + + + +FREDL+YRLNV+P+ +PPLR+R++ Sbjct: 502 QNKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKD 561 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L +F+ + + I+P VV+IL ++ WPGN+REL NL+E +V V ++ Sbjct: 562 DIPPLAAHFIEVFNHKYKK-NKKISPGVVDILMQYDWPGNIRELENLIERMV-VTTMDDI 619 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV 569 I S LP L + S + + + L D A+E +EKQ++ A +++ + +Q+ Sbjct: 620 ITSEDLPSYLRDKVGISSSYI--IVSGIVPLRD----AVESVEKQLLERAYAKYRTTRQM 673 Query: 570 ADELGIGIATLYRKIKKY 587 A EL + +T+ RK KY Sbjct: 674 AKELKVDASTVVRKAAKY 691 >UniRef50_A7GLU4 Putative PAS/PAC sensor protein n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GLU4_BACCN Length = 457 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 265/458 (57%), Gaps = 50/458 (10%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK--------------- 203 + + ++D+ + V+D + R+ +VN+ + G+ + +IG+ Sbjct: 16 ADVLMNILDHSSDEIYVLDKDTRIVYVNKVCERHYGLKPSEVIGRLNEEFVLNNYWKPSI 75 Query: 204 -PIRFR---PLTF-ESNFTHGHMQH----IVSWDDKSELIIGQLHNIQGRQLFLMAFHQS 254 PI F+ P+T ++ + G + I++ +++ EL++ Q + +MA Sbjct: 76 VPIVFKEKKPVTIKQTTYIGGELITTAIPILNKENEIELVVTTARE-QNYKTIIMA---- 130 Query: 255 HTSFSVANAPDEPHIEQLVGEC-----RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 V + H + L G+ M+ L + ++A + ++V++ GESGTGK V+ Sbjct: 131 ----PVEQEMEHSHDDNLFGQTILTNNEKMKNLIKFCEKVASTDTTVLIQGESGTGKGVL 186 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A IH++S RR PF+ +NCAAIPE+LLESELFGY KGAFTGA +G+ GL + AN GT+ Sbjct: 187 ANYIHQMSKRRKGPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFETANHGTI 246 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG++ L +QAK+L+ I+ R+ +P+G + +VD+RII+ATNQNL + + + +FRED Sbjct: 247 FLDEIGEISLKVQAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQKQFRED 306 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNVI I LPPLRER ED L +YFL+ ++ V ++ DV++++ ++ WPGN Sbjct: 307 LYYRLNVIDIKLPPLRERMEDAISLTYYFLNKFNKKY-QVNRIVSQDVLDMISRYLWPGN 365 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +R+L N++E L VV S VI S+ LP +L T+Q S A A+ Sbjct: 366 VRQLENVIERL--VVTSDSVIQSSDLPEMILQAAETKQ---------FYSRPTALDAAIR 414 Query: 550 EMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 E+E+QM+ + + S ++VA +L I + I+KY Sbjct: 415 ELEEQMVVNSYKKFGSTRKVAADLSISQTRASKLIRKY 452 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 164/450 (36%), Positives = 251/450 (55%), Gaps = 47/450 (10%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----RFRPL--TFESNFT 217 ++D +++G++ +D + NQ+ + G+ +IG+ + P+ T ++ + Sbjct: 87 VLDTVNEGIIAIDSHGTISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGES 146 Query: 218 HGHMQHIVSWDDK-------SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIE 270 + + + I++ + + I +L NI G L + P Sbjct: 147 YNNQEIIINVEGRRLHYLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLNSFN 206 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++ MR + + ++A + ++V++ GESGTGKE+ ARAIH S RR KPF+ +NCA Sbjct: 207 DIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCA 266 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 A+PE LLESELFGYV+GAFTGA GK GL++ A+ GTLFLDEI ++P LQAKLLR ++ Sbjct: 267 AVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQ 326 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 ++ IG I VDIRII+ATN+NL + EGKFREDL++RLNV P+ +PPLRER ED Sbjct: 327 EGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVED 386 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 IE+L ++FL+ +R G Y I + + L+ + WPGN+REL N++E + Sbjct: 387 IEVLTYHFLNTFAKRRGIQYFEITENALNKLKAYSWPGNVRELQNVIERAL--------- 437 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT---------ALEEMEKQMIREALS 561 L ++G E D+ LD+ T A+ ++EK++I AL Sbjct: 438 -------TLADDGVIEAKDII--------LDNPQNTYFVARTLEEAVNQVEKELIERALK 482 Query: 562 RHNSKKQVADELGIGIATLYRKIKKYELLN 591 ++ S +Q A LG+ TL KIKK +L N Sbjct: 483 QYPSIRQAARSLGVTHTTLRNKIKKLKLTN 512 >UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6Q8_9CLOT Length = 476 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 257/456 (56%), Gaps = 44/456 (9%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP-----------IRFRPL 210 F +ID+M VL+ D++ + ++N + G +IGK I P+ Sbjct: 21 FQRLIDSMYDEVLIYDNQYTIVYINDACSRHYGYQPEQMIGKSFFEFVDGNCWDISVLPV 80 Query: 211 TFESNFTHGHMQH-----------IVSWDDKSEL---IIGQLHNIQGRQLFLMAFHQSHT 256 +E T+ Q + +D + L I+ N+ G +LF + + Sbjct: 81 IYEKKKTYAVKQKTKLGSELLTIAVPIFDSQKNLAYVIMNVRDNLSGVKLFNPDYIYRKS 140 Query: 257 SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 S S + P + + R M Q+ + RI+ + ++ GESGTGK +VAR IH + Sbjct: 141 SLSYSTVP--------MCKSREMEQVIQFAERISQVDVTCILTGESGTGKTMVARYIHSI 192 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R +PFI++NCA+IP +L+ESELFGY+KGAFTGA+ GK GL +AA+ GTL LDEI + Sbjct: 193 SPRNARPFISLNCASIPNELVESELFGYIKGAFTGANTQGKKGLFEAASGGTLLLDEIAE 252 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 + L QAKLL ++ E +PIG SSP++VD+RII+ATN+NL Q +A+G+FREDLFYRLNV Sbjct: 253 LSLSTQAKLLHVLQDHEFIPIGGSSPVKVDVRIIAATNKNLRQMVADGQFREDLFYRLNV 312 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 + I LPPLR+R+ DI L+ FL + ++ + +E L + W GN+REL ++ Sbjct: 313 VEIYLPPLRKRKADIPDLIQQFLKEFNEKY-NLSRSLDSHALETLVNYEWKGNVRELRHM 371 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS-DVTEVSEAHLSLDDAGGTALEEMEKQM 555 +E LV V +G++I + LP N+ + T + +V ++++ H T ++ E+ M Sbjct: 372 IERLV-VTVTGDLITTGHLPQNMTGSTDTGTAREVPKITDYH--------TRMQNFEEAM 422 Query: 556 IREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 IREA + S +++A L I R I+KY L N Sbjct: 423 IREAYQKCGSSRKMAAYLNISQTKANRLIQKYLLGN 458 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/328 (45%), Positives = 217/328 (66%), Gaps = 20/328 (6%) Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 Q +FSV + EQ+V M+QL + +IAP P++V++ G SG GKEV+A Sbjct: 245 QHRYTFSVDGSK-----EQIVFRSPSMKQLFDKVEQIAPYPTTVLLTGPSGVGKEVIANL 299 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH LS R+NKPFI +NC AIPE LLESELFGY KGAFTGA +GK GL++ A+ GT+ LD Sbjct: 300 IHHLSPRKNKPFIKVNCGAIPEPLLESELFGYEKGAFTGARQDGKIGLLELADKGTIMLD 359 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIG+MPL LQ KLLR ++ +++ IG+ ++D+RII+ATNQNL + I++GKFREDL+Y Sbjct: 360 EIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLKELISQGKFREDLYY 419 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RL VI + +PPL ER EDIE L+ ++ + +L + ++P EIL+++ WPGN+RE Sbjct: 420 RLQVIEMYIPPLAERPEDIEPLIDHYFSFYC-KLYRINKHLSPKTKEILQRYHWPGNVRE 478 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L NLME +V VP S L+ P+ L +Q+ T + L+L + +E+ E Sbjct: 479 LKNLMENMVVSVP------SQLIEPHDLPLHIYDQTAAT----SPLTLKE----RVEQFE 524 Query: 553 KQMIREALSRHNSKKQVADELGIGIATL 580 +++I EA+ ++ S ++ A +LGI +TL Sbjct: 525 RRLIYEAIEKNTSLRKAAQQLGIDHSTL 552 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 260/455 (57%), Gaps = 38/455 (8%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------------------ 206 ++D++ GV+ VD E V + N+ + G+ ++ ++G+ + Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTPL 91 Query: 207 --FRPLTFE----SN----FTHGHMQHIVS-WDDKSELIIGQLHNIQGRQLFLMAFHQSH 255 R F+ SN + G M VS + D +E++ + R + ++ Sbjct: 92 LGVRTRVFDHVVVSNIVPVYHQGRMVGAVSVFRDITEVLALSRQLDEARNTIDL-LRENL 150 Query: 256 TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 T+ VA E + ++G+ +++ + A S V++ GESGTGKEV+AR IH Sbjct: 151 TAAPVA----EDGV--IIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHN 204 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 S RR++P IA+NCAAIP LLESELFGY +GAFTG+ G+ GL Q A+ GTLFLDEIG Sbjct: 205 RSARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIG 264 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 DM LQAKLLRA+++ EI +G ++ +V++RIISATNQNLAQ + E +FREDL+YRL Sbjct: 265 DMDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLR 324 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 VI + LPPLRER+ D+ L + + + RLG +P + L + +PGN+REL N Sbjct: 325 VIHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELEN 384 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-TALEEMEKQ 554 ++E V V+ G+VID LPP+++ T + L L+D G LEE+E++ Sbjct: 385 VVEQAV-VLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERR 443 Query: 555 MIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 ++ L +SK ++A LG+ ATLYRK+ +Y L Sbjct: 444 VLEAGLRAFDSKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC60A6 Length = 504 Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 256/463 (55%), Gaps = 51/463 (11%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHM 221 F + DN+ G+ + + E + F+N+ + G+ + IIGK + R + + + G + Sbjct: 49 FKEIADNLFDGIYISNGEGKTLFINEAYTRITGITKEEIIGKNV--RDILAKGDIYKGAV 106 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMA--FHQ-SHTSFSVANAPD-------EPHIEQ 271 V + K IG++ + L + F + + V N D E IE+ Sbjct: 107 TLDVIKEKKRINNIGKIVKLDKDVLVTGSPIFDKYGNVELVVINNRDISELKDLENKIEK 166 Query: 272 L------------------------VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 L + + M + LI+ IAP+ +V++ GESGTGKE Sbjct: 167 LKKTSLKVDEEIKFLRSRQMSNRKLIYKSEKMNSIFTLINTIAPTDVTVLITGESGTGKE 226 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VA I S R++KPFI +NCAAIP +LLE+ELFGY GAFT + NGK G+ + AN G Sbjct: 227 LVADEIFYKSFRKDKPFIKVNCAAIPSELLEAELFGYEGGAFTDSKKNGKIGMFELANEG 286 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+ LDEIGDMP+ LQ KLLR ++ +EI+ +G + PI+++IRII++TNQNL + I GKFR Sbjct: 287 TILLDEIGDMPIKLQTKLLRVLQQKEIMKLGGTQPIKLNIRIIASTNQNLKEQIKNGKFR 346 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDLFYRLNV+PI + PLR+R+EDI L+ FL++ ++ I + +E+L K++WP Sbjct: 347 EDLFYRLNVVPIDIEPLRKRKEDIPELIFEFLNIFNKKYNK-NTKIDKEAIELLVKYKWP 405 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD-VTEVSEAHLSLDDAGGT 546 GN+REL N +E +V + +G + + P + D EVS+ L Sbjct: 406 GNIRELENFLERMVVINTTGIITVREVAP-------MIDSDDFFMEVSDYDLK------K 452 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 A+ +EK+MI +AL S ++ A LGI +T+ +K K E+ Sbjct: 453 AVSYLEKRMISKALKNFGSTRKAAKHLGIDQSTVVKKCKSLEI 495 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 144/321 (44%), Positives = 211/321 (65%), Gaps = 12/321 (3%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++G + +LK +I +IAP ++V++ GESGTGKE+VA A+H SGR FI +NCA Sbjct: 263 KIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRPGS-FIKVNCA 321 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE L E+ELFGYV+GAFTGA G+ G + AN GT+FLDEIGDMPL +QAKLLR ++ Sbjct: 322 AIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQ 381 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E+ +G ++++R+I+ATNQNL + I + KFREDL+YRLNVI + +P LRER ED Sbjct: 382 EKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIED 441 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 + LL+ YF+ + G+ GI+P+V++I + WPGN+REL N++E N+V G+VI Sbjct: 442 LPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLV-EGKVI 500 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQV 569 + LPP +L E+ L + LE EK++I+ AL + +K + Sbjct: 501 EKKYLPPYILG---------EELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKA 551 Query: 570 ADELGIGIATLYRKIKKYELL 590 A+ LGI L++++K + LL Sbjct: 552 ANLLGISRQWLHKRLKYFNLL 572 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 147/325 (45%), Positives = 211/325 (64%), Gaps = 14/325 (4%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++L+ M+++ ++ ++A S+V+++GESG GK V+A +H+LS R PFI INC Sbjct: 240 DELIARSPQMKKVIEMVDKVAQVDSTVLIMGESGVGKGVIASRLHRLSRRAKGPFITINC 299 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE LLESELFGY GAFTGA GK GL++ AN GT+FLDEI ++PL LQ KLL+ I Sbjct: 300 GAIPEHLLESELFGYEGGAFTGARKEGKKGLLELANGGTVFLDEITELPLSLQVKLLQVI 359 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + ++++ +G S I VDIR ++ATN+++ + +AEG FREDL+YRLNVIP+ +PPLR RQE Sbjct: 360 QDKKLIRVGGSKYISVDIRFVAATNKDIQRMVAEGLFREDLYYRLNVIPVIIPPLRYRQE 419 Query: 450 DIELLVHYFLHLHTRRLGSVY---PGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 DI +L+ YFL +L + Y P+ +EILR + WPGN+REL NL+E L+ V Sbjct: 420 DIPVLLEYFLE----KLNTKYEKNKKFTPEAIEILRNYNWPGNVRELENLVERLL-VTKE 474 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G I + LP + + + + + L A+EEMEKQ+ A +R + Sbjct: 475 GNEITVSHLPEYIFEGKSRFPNRIYVLDICPLK------EAVEEMEKQLFSMAYNRLKNT 528 Query: 567 KQVADELGIGIATLYRKIKKYELLN 591 +VAD L I +T+ RKI+KY LL+ Sbjct: 529 YKVADALAINQSTVVRKIQKYNLLS 553 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 174/471 (36%), Positives = 264/471 (56%), Gaps = 65/471 (13%) Query: 160 KIFATM---IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK------PIRFRPL 210 K+ AT+ ++N +G++V+DD+ + +NQ L +GV ++IGK P P Sbjct: 255 KLMATLEAVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDVIGKKINDISPNSSLPQ 314 Query: 211 TFESNFTH-GHMQHIVSWD--------DKSELIIGQL-----HNIQGRQLF--------- 247 T +S G H+ D ++ ++G L N++ ++F Sbjct: 315 TLKSGKAQFGETWHLKGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEE 374 Query: 248 --------LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 L FH S F + ++GE M++ K L R + + S+++++ Sbjct: 375 NLAYYKEELGKFHSSQFVF-----------DDIIGESPRMKKAKSLAHRASQTTSTILIL 423 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKEV + AIHK S R N P+I +NCAA+PE LLESELFGY +GAFTGA GK G Sbjct: 424 GESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPG 483 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + A+ GT+FLDEIGDM L +QAKLLR ++ RE+ +G + PI+VD+RII+ATN++L + Sbjct: 484 KFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHK 543 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + E KFR DL+YRLNV+ I LPPLRER+EDI + + +RLG+ G+ P+ + Sbjct: 544 MVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESIT 603 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 L + WPGN+REL N++E + + ++ +LP +L G E +T +E L Sbjct: 604 HLCAYDWPGNIRELENILERAIVICD-----EAWILPKHLALPGVMET--ITLGAEQTLE 656 Query: 540 LDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 AL+ E++++ + L R +K Q A LGI + LY+K+ KY + Sbjct: 657 Y------ALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 281 bits (718), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 177/465 (38%), Positives = 263/465 (56%), Gaps = 42/465 (9%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPL 210 +++ T++D +GV+VVD V+ +N+ + LG+ + + IGK + R Sbjct: 112 LAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLHIC 171 Query: 211 TFESNFTHGHMQHIVS----------WDDKSELIIGQLHNI--QGRQLFLMAF------- 251 G++Q I W D +IG + + QG F Sbjct: 172 VQSGIPERGYIQKIYGQPMVVHRIPIWRDGK--VIGAVGMLIFQGVSEVYAIFQRLQELS 229 Query: 252 --------HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 +++ S A A +E+++G + +K++I R A PS+V++ GESG Sbjct: 230 REASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESG 289 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKEVVARAIH+ + PF+++NCAAIPE LLE+ELFGY GAFTGA GK G Q Sbjct: 290 TGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQL 349 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEIGDMPL +QAK+LR +E +++ +G S +VD+RII+ATN+ L + + + Sbjct: 350 AHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRD 409 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYRLN+I I LPPLRER+ DI L+ + + R+ G V A + +E+L Sbjct: 410 GTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLIN 469 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E+L+++V GE I+ LP L +T VT + + ++ D Sbjct: 470 YSWPGNIRELVNVVEWLISMV-EGENIEREHLPAYL----STIHPSVTPMPDGGANIADQ 524 Query: 544 GGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587 + + E++ I AL N +K + A LGI +TLY K+KKY Sbjct: 525 WKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKY 569 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/323 (47%), Positives = 209/323 (64%), Gaps = 15/323 (4%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 +++ + G+ + ++K+LI + A S +V++ GESG GKE+ AR IH LS R +KPF+AI Sbjct: 418 YLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAI 477 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLESELFGY +GAFTGA GK G I+ A+ GTLFLDEIGDMPL +Q KLLR Sbjct: 478 NCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLR 537 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 I+ RE IG+++P +VDIRII+ATNQ LA+ + EG+FR DL+YRLNV I +PPLRER Sbjct: 538 FIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRER 597 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 ++DI LLV+ F++ R + + + IL + WPGN+REL N++E + G Sbjct: 598 RDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIE-RAYYLAEG 656 Query: 508 EVIDSTLLPPNLLNNGTTEQ--SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 +I LP L + + + + +T E A+ E+EK++I E L N Sbjct: 657 NLIKPEHLPAQLTSKALSGERITKITTFKE-----------AVAEVEKKLIIEGLKATNY 705 Query: 566 KK-QVADELGIGIATLYRKIKKY 587 K A LGI ATLY+KIK+Y Sbjct: 706 NKLACAKLLGIPRATLYQKIKEY 728 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 161/439 (36%), Positives = 252/439 (57%), Gaps = 27/439 (6%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----RFRPLTFESNFTHG 219 + D+++ G+ VD + ++ +N++A L + + ++I K + ++ + Sbjct: 204 ITDSVNLGIFAVDTKGIIKAINKSACDMLHINEEDVINKNVDTVLDSWKHILQRLRNGQS 263 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMA----FHQSHTSFSVANA----PDEPHIEQ 271 + + + DK + ++ I+ + + F +++ N + + Sbjct: 264 YEDEEIMYSDKKKRFNINVYPIKDKNSNITGMVGIFKDIQNVYNLVNKYINRTAKYTFDD 323 Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G+ M++LK I I+ SPS+V++ GESGTGKE++A++IH S RR+K F+AINC A Sbjct: 324 IIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHNNSNRRSKSFVAINCGA 383 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP+ L+ESELFGY +GAFTGA G G + AN GTLFLDEIG+MPL +Q LLR ++ Sbjct: 384 IPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEMPLDMQVNLLRVLQE 443 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 I IG + + VD+RII+ATN+NL + I +G FREDL+YRL+VIPI +PPLRER DI Sbjct: 444 GCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRERNGDI 503 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 +L+ +FL + +LG + P I ++ E L + WPGN+REL N +E +VN+ + Sbjct: 504 GILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWPGNVRELENCIENIVNMNGNTSF-- 561 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVA 570 N N T + DV S+ L D +LEE+EK+ I +++ + Sbjct: 562 ------NFEN--RTIKKDVNCYSDVSLEYDMC---SLEELEKRAISICINQCGGNISKAC 610 Query: 571 DELGIGIATLYRKIKKYEL 589 LGI +TLY KIKKY + Sbjct: 611 RILGINRSTLYIKIKKYNI 629 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 154/356 (43%), Positives = 221/356 (62%), Gaps = 11/356 (3%) Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 I H + + L L + + S N + +E ++G +R++K LI ++A + S Sbjct: 221 ISDFHALSKKLLDLEKEVEFYKSKIAENKTAKYSVENIIGHSNKIRKVKDLIGKVANTNS 280 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE++A +IH S R PFI INCA+IP +LLESELFGY +GAFTGA Sbjct: 281 NVLINGESGTGKEMIAHSIHNSSKRYLAPFIKINCASIPAELLESELFGYEEGAFTGAKK 340 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK G + AN G++FLDEIGDM + +QAK+LR I+ REI IG S VD+RII+ATN Sbjct: 341 GGKKGKFELANGGSIFLDEIGDMNINMQAKILRVIQEREIESIGGSGVKSVDVRIITATN 400 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + + +G+FREDL+YRLNV+ I PPLRER+EDI L + +RL GI+ Sbjct: 401 KNLEELVKKGEFREDLYYRLNVVKIVSPPLRERKEDIPALANALRIKIAKRLDVYVEGIS 460 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 D +E L + WPGN+REL N++E +N++ S +I + L + SD E Sbjct: 461 KDAIECLGNYDWPGNIRELENVIERAINLLDSNIMIKTEHLSKRFTSAKYKRYSDKNEYL 520 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 + T +EE+EK++I E L+R+N +K + A LGI A LY+KI+++ L Sbjct: 521 K----------TIVEEVEKEVILECLNRNNWNKNKTAQILGISRAGLYKKIEEFNL 566 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 148/324 (45%), Positives = 215/324 (66%), Gaps = 8/324 (2%) Query: 272 LVGECRVMRQLKRLISRIAP-SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++G+ MRQL I ++A SSV+V+GESGTGKE+VARAIH R K F+ +NCA Sbjct: 147 IIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIHAHGPRSRKNFVPVNCA 206 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGYVKGAFTGA+ K G +Q A GTLFLDEIGDM LQAKLLR ++ Sbjct: 207 AIPEDLLESELFGYVKGAFTGAT-QAKMGRLQYAEGGTLFLDEIGDMKASLQAKLLRVLQ 265 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E P+G P+ VD+RI++AT+++L + +AEG+FREDL+YRLNVIP+ +PPLR+R+ED Sbjct: 266 EKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIPLQIPPLRKRKED 325 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I LL+ F+ ++ R+ + + G + D ++ L+++ WPGN+REL NL++ + ++ +G+ + Sbjct: 326 ISLLIERFVGIYNRKKKNPFKGFSDDALQALKQYPWPGNVRELENLVQRM-SIFFAGQSV 384 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---GTALEEMEKQMIREALS-RHNSK 566 LP +Q V E E +SL+D G + E Q+I +AL+ +K Sbjct: 385 SRKDLPEKYQGCDEAQQQPVQE-QENSISLEDGGVDFNLLVNRFENQLILQALNVTGGNK 443 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 ++ A L + TL K+K+ +L Sbjct: 444 REAAKLLNLKRTTLIEKLKRKNIL 467 >UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7K7_BREBN Length = 455 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 141/316 (44%), Positives = 214/316 (67%), Gaps = 8/316 (2%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+ + M Q+ L +++ SS++++GESG GK V+A+ IH+ S R +KPF+ INC A Sbjct: 144 LIYRSQSMEQVAMLAKKLSQVESSMILLGESGVGKGVLAKYIHECSPRVDKPFVHINCGA 203 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFGY KGAFTGA +GK GLI+ AN GTLFLDEIG+M L LQ KLL ++ Sbjct: 204 IPETLLESELFGYEKGAFTGAFKDGKAGLIEKANGGTLFLDEIGEMSLSLQVKLLNVLQE 263 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + I P+G+S +VD+++I+ATN+NL Q + EG+FREDL+YR++V+P+ +PPLRERQE+I Sbjct: 264 KTITPVGSSVSRKVDVKLITATNKNLRQMVKEGRFREDLYYRIHVVPLEIPPLRERQEEI 323 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 +LVHYFL++ +++ + +A IL ++ WPGN+REL N++E L VV S +V+ Sbjct: 324 PVLVHYFLNVFSQKY-CLERQLADTCYRILSEYDWPGNVRELENVVERL--VVTSHDVLI 380 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVAD 571 + P ++N + +V A A++E+E+Q+++ A +H + +VA+ Sbjct: 381 TPAQIPRYIHNQEYREHKGIKVDHVM-----AMQEAMDEVERQLVQRAYEQHKTTTKVAE 435 Query: 572 ELGIGIATLYRKIKKY 587 LGI + RK++K+ Sbjct: 436 ALGISQPSASRKLRKW 451 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 142/319 (44%), Positives = 215/319 (67%), Gaps = 11/319 (3%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++++ + MR+L + R+A S++++ GESGTGKE++A IH S R KPFI +NC Sbjct: 381 DKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGKELIAETIHNHSARAKKPFIKVNC 440 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE L+ESELFGY GAFTGA GK G + A+ GTLFLDEIGD+P LQ KLLR + Sbjct: 441 GAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQVKLLRVL 500 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 +++EI +G ++VD RI++ATN+NL + + + +FREDL+YRL+VIP+ +PPLR+R+E Sbjct: 501 QSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPPLRDRKE 560 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L+ +F+ L R+ + I+PDVV+IL + WPGN+REL NL+E LV V+ S ++ Sbjct: 561 DIPSLIVHFIALFNRKY-KLNKRISPDVVDILMAYDWPGNVRELENLIERLV-VISSSDI 618 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVS-EAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ 568 I LP +L ++ D +VS A + L + A+E +E+Q++ A +++ + +Q Sbjct: 619 ISRDELPVHL----SSAAVDNPQVSVSAIIPLKE----AVESVERQLLERAFAQYRTTRQ 670 Query: 569 VADELGIGIATLYRKIKKY 587 +A +L + +T+ RK KY Sbjct: 671 MAQKLEVNASTVVRKAAKY 689 >UniRef50_Q188I7 Sigma-54-dependent transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q188I7_CLOD6 Length = 547 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 231/364 (63%), Gaps = 22/364 (6%) Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 WD K +L G L GR + + +S +S D + + + ++M +K+++ Sbjct: 195 WDSKGKLTGGVL---TGRDISRVIKLESQIKYS-----DISEDTEYISQSKIMDNIKKVV 246 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 R A S SS+ + GESG GKE++AR I+K S RR+KPFIAINC AIP +LLESE FGY + Sbjct: 247 KRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEE 306 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 G+FTGA GK GL + AN GT+FLDEIG++P+ +Q KLLR I+ I IG S PI++D Sbjct: 307 GSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKID 366 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 +R ISATN + KFR+DL+YRL+VIP+ +PPLRER+EDI LV+YFL L+ + Sbjct: 367 VRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKY 426 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV-----NVVPSGEVIDSTLLPPNLLN 521 ++P V+E+L ++ WPGN+REL N++E V NV+ E + L+ ++++ Sbjct: 427 NREVE-VSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEF--NMLINLDMID 483 Query: 522 NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLY 581 N T + S + V ++L+DA +++ MI +A++++ S + A+ +GI +T++ Sbjct: 484 NETDDLSPI--VVNGIMNLNDAYKI----VDQIMISKAINKYGSITKAAEVIGIYPSTIH 537 Query: 582 RKIK 585 RKIK Sbjct: 538 RKIK 541 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 277 bits (709), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 149/318 (46%), Positives = 209/318 (65%), Gaps = 11/318 (3%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++V + + MRQ+ I R+AP+ S+V++ GESGTGKE+VA +IH+ S R + F+ INCA Sbjct: 127 EIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKINCA 186 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP+ LLESELFGY KGAFTGA+A K G + AN GT+FLDEIGDMPL QAK+LR +E Sbjct: 187 AIPDTLLESELFGYEKGAFTGAAAR-KPGKFEQANGGTVFLDEIGDMPLETQAKILRVLE 245 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E+ +G PI VD+R+++ATN+N+ + +A+G FREDLF+RLNV PI LPPLRER ED Sbjct: 246 EKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPED 305 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L+ F+ ++ I+P + IL H+WPGN+REL N +E +++ EV+ Sbjct: 306 IPFLIEEFMKFSSKE-----STISPPAMHILCAHQWPGNVRELRNAVES--SLLFGKEVV 358 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQV 569 + LPP L + +S SLD L+E+EK ++ EAL R + + Q Sbjct: 359 EPEHLPPALAGSMAVPTPAGVLISGEDESLDL--DFRLQELEKGILVEALKRSDGVQAQA 416 Query: 570 ADELGIGIATLYRKIKKY 587 A LGI +L+ ++KKY Sbjct: 417 ARLLGIKERSLWHRVKKY 434 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/328 (47%), Positives = 212/328 (64%), Gaps = 13/328 (3%) Query: 252 HQSHTSFSVANAP---DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 HQ+ S S + P + + ++GE M L +I ++A S S+V++ GESGTGKE+ Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VARAIH LS R +K F+A+NCAAIP++LLESELFG+VKG+FTGA A+ + G + A+ GT Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVAS-RIGRFEMADKGT 239 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDM LQ KLLR +++RE+ P+G++ +VD+RII+ATNQNL +A +FRE Sbjct: 240 LFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRE 299 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRL+VIPI LPPLRER D+ LL++ FL R G V+EIL + WPG Sbjct: 300 DLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPG 359 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---G 545 N+REL NL+E LV + +G VI LP TT T + ++L D G Sbjct: 360 NVRELENLVERLVIIKTTG-VISIHDLPEKYRGGRTT-----TVLHGEPMTLPDDGFCLN 413 Query: 546 TALEEMEKQMIREALSRHNSKKQVADEL 573 +A+EE E ++I +AL + K+ A EL Sbjct: 414 SAVEEFENRLILQALEKSGGNKKEAAEL 441 >UniRef50_C6CDP8 Putative sigma54 specific transcriptional regulator n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDP8_DICDC Length = 485 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 213/327 (65%), Gaps = 11/327 (3%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+G +++++ L++RIAP+ V++ GESGTGKEV+A AI + S R +KPFI +NCAA Sbjct: 158 LIGRSDTLKRIRTLLTRIAPTNVPVLITGESGTGKEVIASAIQRFSARADKPFIKVNCAA 217 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP LLESELFGY KGAFTGA+ GK G + AN GTLFLDEIG++P QAKLLR ++ Sbjct: 218 IPTSLLESELFGYDKGAFTGATPQGKAGFFEQANGGTLFLDEIGELPWEAQAKLLRVLQH 277 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +EI +G++ I +D+RII+ATN +L + I + FR DL+YRL++IP+ LPPLRER EDI Sbjct: 278 QEIQRLGSTRSIMLDVRIIAATNASLQEKIQQRLFRSDLYYRLSIIPLHLPPLRERPEDI 337 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL+ +F + ++ + A D ++ L++H WPGN+REL N +EY+ + +D Sbjct: 338 PLLIEFFSGVFDQQYQRIIRFDA-DGIDRLKRHVWPGNVRELRNFLEYMY-ICAEENFVD 395 Query: 512 STLLPPNLLNNGTTEQSDVT---------EVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 T + LL N T + +D + ++ L +D T ++E+E+ ++R++L+ Sbjct: 396 ITTIEHWLLGNRTEQPTDTSSQCPASELESFCQSMLEMDVPLKTIIDEVERCVLRQSLAT 455 Query: 563 HNSKKQVADELGIGIATLYRKIKKYEL 589 H + VA +LG+ T+ RK+ + L Sbjct: 456 HKTTYAVAKKLGVAQPTIVRKLHGHNL 482 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/326 (45%), Positives = 220/326 (67%), Gaps = 10/326 (3%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +E IE ++G + +LKR I ++A + + VM++GE+GTGKE+VA++IH S R++ PF Sbjct: 133 EEKQIE-IIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHYQSPRKDYPF 191 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + INCAAIP++L E+E FGY KGAFT A K G ++ A+ GTLFLDE+ DM L QAK Sbjct: 192 VDINCAAIPDELFEAEFFGYEKGAFTNAFTR-KIGKLELADKGTLFLDEVADMSLSSQAK 250 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR +E ++ +G+++ I VD+R+ISATN+++ + + +G FR+DL +RL+VIPI +PPL Sbjct: 251 LLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSVIPIYVPPL 310 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER+EDI LL +YFL + P ++ +V + WPGN+REL NLME LV ++ Sbjct: 311 REREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELKNLMERLV-IL 369 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 S +I + LPP++L N E+ + ++ L A EE+EKQMI++AL +N Sbjct: 370 NSESIIYNKDLPPHMLGNVKLEKEESIPITIRPLK------DAKEELEKQMIKKALKVYN 423 Query: 565 SK-KQVADELGIGIATLYRKIKKYEL 589 + K++A L I +++LYRKIK+Y L Sbjct: 424 NNLKEIAKALDIDLSSLYRKIKQYNL 449 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/322 (45%), Positives = 210/322 (65%), Gaps = 10/322 (3%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 LVG MR++ + ++A + ++V+V+GESGTGKE+VARAIH S RR +PF++I+CAA Sbjct: 175 LVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAA 234 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFG+ KGAFTGA K G + AN GTLFLDE+G++P +Q KLLR ++ Sbjct: 235 IPEGLLESELFGHEKGAFTGAIRR-KLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQE 293 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R+ +G ++VD+R++SATN+NLAQ + G+FREDL+YRLNV+PI LPPLR+R D+ Sbjct: 294 RQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDV 353 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 E L +F+ R+ G+AP+ +E+LR+HRWPGN+REL N++E + V GE++ Sbjct: 354 EELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQAL-VFAEGELVR 412 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVA 570 LP + + V SL D LE++E+Q+I A + K + A Sbjct: 413 PRDLPEGVRK---APPAPSLPVPSGDRSLTD----ILEDLERQLILAAYEKARGVKAETA 465 Query: 571 DELGIGIATLYRKIKKYELLNT 592 LGI + LY K++KY ++ Sbjct: 466 RLLGIKPSALYYKLEKYGIVKA 487 >UniRef50_C5EQI0 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQI0_9FIRM Length = 478 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/317 (45%), Positives = 219/317 (69%), Gaps = 8/317 (2%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +V + R M+Q+ ++ +R+A +SVM++GESG GK+V A+ IH +S R+N+ FI +N A Sbjct: 167 IVSDIR-MKQIYKIATRLASVTTSVMILGESGVGKDVYAKFIHSISNRKNRNFIHVNLGA 225 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP+ L ESELFGY GAFTGAS GKTGLI+ A+ GTLFLDEIG++ L +QAKLL+ ++ Sbjct: 226 IPKSLFESELFGYEAGAFTGASKTGKTGLIELADGGTLFLDEIGELGLDIQAKLLQVVQE 285 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R + IG++ + +DIRII+ATN+NL Q + +G+FR DL+YRLNV+ + +PPLRER +I Sbjct: 286 RSVRRIGSARTVPLDIRIIAATNRNLEQMVKDGQFRLDLYYRLNVVTVEIPPLRERTVEI 345 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LLV+ FL+ ++ S + + +++L +H WPGN+REL +++E LV V+ + +VI Sbjct: 346 PLLVNAFLNRFNKKY-STHKTMGASAMDVLMRHDWPGNIRELMHIIESLV-VIGTNDVIT 403 Query: 512 STLLPPNL-LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 LP +L + G + ++++ L+L DA T L +EK++I EAL RH + A Sbjct: 404 PAELPSSLTVPGGESILGMISDLDSPDLNLKDA--TVL--LEKRLICEALKRHKTTTAAA 459 Query: 571 DELGIGIATLYRKIKKY 587 + +G+ I+TL +K KKY Sbjct: 460 EAMGVDISTLSKKRKKY 476 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 150/319 (47%), Positives = 206/319 (64%), Gaps = 10/319 (3%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E ++G+ M Q+ LI ++ SSV++ GESGTGKE+VARAIH R+ + F +NC Sbjct: 139 EGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARAIHFSGKRKQEHFEVVNC 198 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIPE LLESELFGY KGAFTGA A K G Q AN GT+FLDEIGDMPL LQAKLLR + Sbjct: 199 AAIPEHLLESELFGYEKGAFTGA-ATRKEGKFQLANRGTIFLDEIGDMPLALQAKLLRVL 257 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +E+ +G++ ++D+R+I+ATN++L + + EG FREDL++RL+VI I LPPLRERQE Sbjct: 258 QKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFRLHVIHIHLPPLRERQE 317 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ L+ +FLH + LG G D L +++PGN+RELSN++E + V+ GE Sbjct: 318 DLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIRELSNIVESSM-VIADGEY 376 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQ 568 I+ LP + G ++ SLDD G L+E+EK I L + N +K+ Sbjct: 377 IELEDLPMFIREKGEG-------FAKQKGSLDDYIGRPLKELEKDFILATLKHNDNHRKK 429 Query: 569 VADELGIGIATLYRKIKKY 587 A+ LGI L K+K+Y Sbjct: 430 TAEMLGISERGLRDKLKQY 448 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 166/443 (37%), Positives = 258/443 (58%), Gaps = 27/443 (6%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-FRPLTFESNFTHGH 220 F ++D +G++ D E R+ VN A K LG+ + ++G+P R P + Sbjct: 195 FKAILDFAYEGIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQVLQSG 254 Query: 221 MQHIVSWDDKSELIIGQ--LHNIQGRQLF--LMAFHQ-SHTSFSVANAPDEPHI------ 269 + + ++ + + I GR+ + F SH A A E ++ Sbjct: 255 QKRLGELHRAGNTLVAENIIPVIAGRETVGAVATFQDVSHLQAVEARARQELYLKGHVAR 314 Query: 270 ---EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 E +V + VM ++ + A + ++V++ GE+GTGKE+VA++IH S RRN PF+A Sbjct: 315 YTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPFVA 374 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAA+PE LLESELFGY +GAFTGA GK GL + A+ GTLFLDEIG++ L LQA+LL Sbjct: 375 VNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLL 434 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ + I+ +G + VD+RII+AT++NL IA FR DL+YRLNV+ I LPPLRE Sbjct: 435 RVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRE 494 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R ED+ LL+ + +RR G + P + +++ ++ + WPGN+REL N++E LV V+ S Sbjct: 495 RPEDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLV-VLRS 553 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNS 565 GE +++ L +L + V + L+L GT L EME ++IR L+ N+ Sbjct: 554 GEEVEAGDL-DEILEPAENQPQPVLQ-----LALR---GT-LAEMEGEIIRRTLALTGNN 603 Query: 566 KKQVADELGIGIATLYRKIKKYE 588 K++ LG+ TL+R++K ++ Sbjct: 604 KEETCRRLGLSKTTLWRRLKSWQ 626 >UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=5 Tax=Geobacter RepID=Q39QH6_GEOMG Length = 609 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 184/525 (35%), Positives = 281/525 (53%), Gaps = 67/525 (12%) Query: 102 PVILQDRCVG-VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 P++ DR VG V++++ V ++ + SD+L+E LL G Sbjct: 107 PIVEDDRIVGGVLTVLGVLPKETDGSSDDLKE---------------LLRSAG------- 144 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK----------PIRFRPL 210 +D G++++D V VNQ+ + L +IGK P R P+ Sbjct: 145 ---AFMDLDYHGIIILDRNGTVVMVNQSFAEVLDATPQTMIGKHVHQAYHNSQPSRM-PV 200 Query: 211 TFESN---FTHGHMQHIVSWDDKSELI--------IGQLHNIQGRQLFLMA--FHQSHTS 257 E+ + +M + + LI +G++ R++ L+A + Sbjct: 201 VMETGKPEISSHYMNGKEVFASRYPLIKQGKVIGCVGKILFKDVREISLLANRLQSAREK 260 Query: 258 FSVANAPDEP------HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + A A E I+ +VG+ + +LK + R+AP S+V++ GESGTGKE+ A Sbjct: 261 KTPARAIAEKGSLFKYDIDSIVGQSAKIAELKETLLRVAPKNSNVLLRGESGTGKELCAH 320 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S RR PF+ +NCAAIP+ LLESELFGY GAFTGA G+ G + A+TGT+FL Sbjct: 321 AIHAASTRRYAPFVKVNCAAIPDHLLESELFGYADGAFTGAKKGGQVGKFELADTGTIFL 380 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMPL +QAKLLR ++ RE++P+G++ P VD+R+++ATN NL Q ++EGKFREDL+ Sbjct: 381 DEIGDMPLAMQAKLLRVLQERELVPLGSTVPKVVDVRVVAATNSNLEQLVSEGKFREDLY 440 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+ +T+P L++R EDI ++ F+ G GI + E+L+ H WPGN+R Sbjct: 441 YRLNVVALTIPALKDRMEDIYIITKNFIDHFNAEFGLSVQGIDSEAWEVLKHHNWPGNIR 500 Query: 492 ELSNLMEYLVNVVPSGEVID--------STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 EL N++E N V SG +I + L P + L + D+ HL + Sbjct: 501 ELRNVLESAFNAV-SGPLITKENLPIRLAQLCPHSTLPHEFAPGEDLESYIRQHLGKKNI 559 Query: 544 GGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKY 587 ++++E+ ++ +AL N K A LGI LY+K++KY Sbjct: 560 -SDMMDDLERVILEKALEICNGNKLHAAQLLGISRPGLYKKLQKY 603 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 138/327 (42%), Positives = 214/327 (65%), Gaps = 11/327 (3%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 D+ ++++G+ M++L LI ++A ++MV GESGTGKE+V RA+H RR+ PF Sbjct: 277 DKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPF 336 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+P+ +LESELFG+ KGAFTGA + G + A+ GTLFLDEIGDM L +QAK Sbjct: 337 VKVNCAAMPKDILESELFGHEKGAFTGADKK-RVGRFELAHKGTLFLDEIGDMDLSIQAK 395 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LR I+ +E +G + I+VD+RII ATN++L + + EG+FREDL+YRLN I + +PPL Sbjct: 396 FLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPL 455 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER+EDI L+H+FL ++ + P I+P+V + L ++ WPGN+REL N ME + ++ Sbjct: 456 RERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAI-IL 514 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA-HLSLDDAGGTALEEMEKQMIREALSRH 563 ++I LP +++ N E E+ H++ D + ME+++I EAL + Sbjct: 515 CGKDLIRLNNLPISIVKNN-------KEFDESKHVTPIDIKEITIRNMEREIIIEALEKC 567 Query: 564 N-SKKQVADELGIGIATLYRKIKKYEL 589 + ++ + + LGI TLY K+K++ + Sbjct: 568 DWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 144/327 (44%), Positives = 215/327 (65%), Gaps = 21/327 (6%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + ++G+ +R+ L + A S S+V+++GESGTGKE++A AIH S RR PFI +NC Sbjct: 255 DDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNC 314 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP+ LLESE FGY KGAFTGA K G + A+ GT+FLDEIGDM L+LQAKLLR + Sbjct: 315 AAIPDTLLESEFFGYAKGAFTGA-VKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVL 373 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + E +G + I+VD+R+I+ATN+NL + I +G+FREDL+YRLNV+ IT+PPLR R+E Sbjct: 374 QEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKE 433 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ LV + + R+LG GI+ D E+L + WPGN+REL N++E ++ V E+ Sbjct: 434 DLPALVSHLITSLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIERVM-VTADEEI 492 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD-DAGGTALEEMEKQMIREALSRHNS--- 565 + T+++ + V++ +S + D +E+ME+ +IR+A+S+ + Sbjct: 493 L--------------TKKNFIQHVNQFRMSSERDVDLMPIEQMEEMLIRKAISKFGNTVE 538 Query: 566 -KKQVADELGIGIATLYRKIKKYELLN 591 K++ A L I +ATLY K+KK ++ N Sbjct: 539 GKRRAAQALNISLATLYNKLKKIKVAN 565 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 256/454 (56%), Gaps = 45/454 (9%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHG 219 K T+I +M +G+++VD + +NQ + LGV IG + + ++ Sbjct: 216 KYSDTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIG--LHISKMFGDNAPVLD 273 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMA-------FHQSHTSFSV------------ 260 ++ +++++K ++ G G++ F + + Q + SV Sbjct: 274 LLRTGIAYENKEVMLDG------GQRAFYCSATLLRDDYGQMIGAVSVLRPRSSSKRSRC 327 Query: 261 --ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSG 318 ++++G+ M++ + + R + S S+V++ GESGTGKE++A+ IH S Sbjct: 328 LPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNASS 387 Query: 319 RRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 R +PF+A+NCAAI E LLESELFGY +G+FTGA G+ G ++ AN GTLFLDEIGDMP Sbjct: 388 RHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMP 447 Query: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 L +Q KLLR ++ R I +G+S I +D+RII+AT+QNL Q + EG FR+DL+YRLNV+P Sbjct: 448 LQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLP 507 Query: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 IT+PPLRER +D+ L + + + R G I+ + + + WPGN+REL N++E Sbjct: 508 ITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNIRELENVIE 567 Query: 499 YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIRE 558 +N+V G+ + + ++ D E+ H D G L+E+E +M+ Sbjct: 568 RAMNMVDDGDALTAEMI-----------DLDPVELPADHAIPD--GVRPLKEVEMEMVVR 614 Query: 559 AL--SRHNSKKQVADELGIGIATLYRKIKKYELL 590 AL SR N + LGI T+YRKIK+Y+++ Sbjct: 615 ALEMSRGNI-VHASSLLGISRNTIYRKIKEYDIV 647 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 145/327 (44%), Positives = 215/327 (65%), Gaps = 12/327 (3%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 ++ +G+ R M+ + + I ++ S +V++ GESGTGKEVVAR IH S R ++PFI IN Sbjct: 140 VDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKIN 199 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CA IPEQL+ESELFG+ KG+FTGA + K G + A+ G +FLDEIG++PL QAKLLR Sbjct: 200 CATIPEQLMESELFGHEKGSFTGAVSQ-KAGKFEIAHNGIVFLDEIGELPLHTQAKLLRV 258 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ +E +G + I+VD+RI++ATN+NL + EGKFREDL+YRLNV+ + LPPLRER+ Sbjct: 259 LQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERK 318 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 EDI LL++YF+ R+ GI+ + + K+ WPGN+RE+ N+ E V V+ Sbjct: 319 EDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAV-VMARNS 377 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE----EMEKQMIREALSRHN 564 V+ +P L+ NG + + A +SLD +L+ E+EKQ+I ++L+ +N Sbjct: 378 VLMLDDMP--LIGNGN---GFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENN 432 Query: 565 SKKQ-VADELGIGIATLYRKIKKYELL 590 +Q A LG+ +LY K+K+Y+LL Sbjct: 433 WNRQNTAKALGLNRRSLYAKMKEYDLL 459 >UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIT5_BDEBA Length = 352 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 155/321 (48%), Positives = 213/321 (66%), Gaps = 22/321 (6%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +V + VM L ++I R+APS ++++V+GESGTGKE++ARAIH SGR+NKPF+AINC A Sbjct: 35 IVYQSEVMGSLMKMIDRVAPSQANILVLGESGTGKELIARAIHDRSGRKNKPFVAINCGA 94 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 + E LLESELFG+ KG+FTGA N K GL +AAN GTLFLDEIG++ +QAKLLR I+ Sbjct: 95 LRETLLESELFGHEKGSFTGAY-NRKIGLAEAANGGTLFLDEIGELDPAIQAKLLRFIQE 153 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 E+ +G PI+VDIR+I ATN+ L Q + G FREDLFYR+N I ++ PPLR R+EDI Sbjct: 154 GEVYRVGGKDPIKVDIRLICATNRELDQEVTRGNFREDLFYRINTIVVSAPPLRRRKEDI 213 Query: 452 ELLVHYFL----HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 LV++FL H + R SV + ++ L ++ WPGN+REL N+ E L ++ G Sbjct: 214 PALVNHFLNNSQHAYLNRGRSV----NEEAMKALIRYEWPGNIRELQNVCERL-QILSDG 268 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 +I +P N + NG E+ DV ++ D A L E+EK+ I +AL+ +K Sbjct: 269 HMIMLNDIPEN-IRNGEAEK-DV-------IAYDPA--MTLHELEKRYILKALAHFGGNK 317 Query: 567 KQVADELGIGIATLYRKIKKY 587 Q A+ LGI I TLY K+ +Y Sbjct: 318 TQAANNLGITIKTLYNKLHEY 338 >UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW3_THEYD Length = 449 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 145/316 (45%), Positives = 212/316 (67%), Gaps = 14/316 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++GE ++ L I +IA +P++V+++GE+GTGKE+ ARAIH+ S RR KPF+AINCA+ Sbjct: 142 IIGESVEIKLLFEKIRKIANTPTNVLLLGETGTGKELFARAIHEASYRRKKPFVAINCAS 201 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 +PE LLESELFG++KGAFTGA A+ K GL++ A+ GT+FLDEIGD+PL LQAKLLR +E Sbjct: 202 LPENLLESELFGFIKGAFTGA-ASDKKGLLEIADGGTVFLDEIGDLPLSLQAKLLRVLED 260 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 REI P+G+ +VD+R ISATN++L + + EGKFREDLF+RLNVI +++PPLRER DI Sbjct: 261 REIRPLGSVISKKVDLRFISATNKDLIEEVKEGKFREDLFFRLNVITLSIPPLRERGRDI 320 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 E+L H+F+ ++G I +++L KH WPGN+REL N++E V + Sbjct: 321 EILAHHFMRKFAIKMGKNLKKIDSQALKLLYKHPWPGNIRELQNVIEQAVVFCET----- 375 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVAD 571 T++P +L + E + ++EE K+ I + S + +++++AD Sbjct: 376 DTIMPEDLPEYIQHPEKFFDRAKEIPV-------LSIEEYTKEFILKYQSIY-TEQELAD 427 Query: 572 ELGIGIATLYRKIKKY 587 LGI L+ K KK+ Sbjct: 428 MLGITRKALWEKRKKW 443 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 182/556 (32%), Positives = 298/556 (53%), Gaps = 76/556 (13%) Query: 87 CDSKENCREKAFLGTPVILQ----DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIST 142 C ENC+ F +P L+ + C I V E I + + D V + T Sbjct: 42 CKVCENCK---FKESPFPLEHELLNMCFNDELKIIV-----ESIIEEVDRLDDLVIKVKT 93 Query: 143 IFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 + +S LL+ + + +I++ G+ V D + +N+ + G+ ++ +IG Sbjct: 94 VKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIG 153 Query: 203 KPIRFRPLTFESNFTHGHMQHIVS----------WDDKSELII---------GQLH---- 239 + R L E F+ + +V ++ E+++ G++ Sbjct: 154 R--RLDELKAEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRVVT 211 Query: 240 --------NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLIS---- 287 N+ R+L + H + E+L C+ + K I Sbjct: 212 NVRDISELNMLRRELAEVKEKSKHYQRKIVELQ-----EKLTLFCQAQQDFKGFIIKSPL 266 Query: 288 ---------RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 R+A + ++V+++GESGTGKEV+AR IH S R++K F+ +NC AIPE L+E Sbjct: 267 MKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAIPENLME 326 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SE FGY GAFTGA GK G + A GTLFLDE+G++PL LQ KLLRA++ +EI+ +G Sbjct: 327 SEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLG 386 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++ PI+VD+RII+ATN+NLA+ + EGKFREDL+YRLNVI I +PPLR+R+E+I + F Sbjct: 387 STKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEF 446 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L + GS +V+EIL++++WPGN+REL N++E+ V S + I+ LP + Sbjct: 447 LTRINEKYGS-EKKFTREVLEILKEYKWPGNIRELENVIEHA--YVVSQDEINVEDLPIH 503 Query: 519 LLNNGTTEQSDVTEVSEA-----HLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADEL 573 L++ E ++ + + +++LD+ A+ +EK++I +AL ++ ++ + A L Sbjct: 504 -LDSLYGEPGNIALIRKTLQNRENITLDE----AISLVEKKLIEDALLKYGTETRAASVL 558 Query: 574 GIGIATLYRKIKKYEL 589 G+ +T+ RKIKKY + Sbjct: 559 GVNQSTISRKIKKYNI 574 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 258/453 (56%), Gaps = 34/453 (7%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-IIGK 203 V K+L + G G + IF I V++ D ++ F+N+T K L ++N IG Sbjct: 71 VKKILFESGKGI-VGNIFKNSIP-----VVIKDPKHDKAFLNKT--KILDKIKNEAFIGV 122 Query: 204 PIRFRPLT------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 PIR T F+ H + IV +IG + + G A + Sbjct: 123 PIRSEDRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGMSYKLFGILQEEKASWEEQRQ 182 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 D IE VG+ + LK I +IA + S+V+++GESG GK ++A+AIH LS Sbjct: 183 LLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLS 242 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++KPFI++NCAAIPE LLE+ELFGY KGAFTGA + K G + AN GT+FLDEIG++ Sbjct: 243 ERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGA-VHSKKGKFELANGGTIFLDEIGEL 301 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL Q+KLLR I+ +E+ +GA I V++R+I++TN++LA +A G+FREDL+YRLNVI Sbjct: 302 PLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVI 361 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 PI +P LRER+EDI LLV +FL + + I + +E L + WPGN+REL NL+ Sbjct: 362 PIRVPALRERKEDIPLLVKHFLDKFNKHYKK-HINIEKEAMEALVNYNWPGNIRELENLI 420 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E LV V+ + ++ +L +N+ Q+D+ + +E EK+ I+ Sbjct: 421 ERLV-VINNKDITKEDVLLATKINSNKL-QTDIPSI--------------IESTEKEAIK 464 Query: 558 EALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 +AL + K + A LG+ + L +IKKY + Sbjct: 465 KALEKCGYVKSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/323 (45%), Positives = 207/323 (64%), Gaps = 10/323 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 I+ LVG+ R++ + + + S +++++ GESGTGKE+VARAIHK R +KPF+A+ Sbjct: 139 QIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAV 198 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLESE+FG+ KGAFTGA A+ + G Q A+ GTLFLDE+GDMPL LQAK+LR Sbjct: 199 NCAAIPEGLLESEMFGHRKGAFTGAVAD-RVGRFQQADKGTLFLDEVGDMPLALQAKILR 257 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 A++ R I P+G +VD+R+I+ATN+NL + +A +FREDL+YRLNV PI LP LRER Sbjct: 258 ALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRER 317 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 EDI LL +F H G G +P+ ++ + + WPGN+REL N +E +V +G Sbjct: 318 VEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVER-ATIVATG 376 Query: 508 EVIDSTLLPPNLLN---NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 +VI+ LP L GT + ++ + L+ AL E+EK I AL + N Sbjct: 377 QVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLE----AALAEVEKAYILAALQQSN 432 Query: 565 SKKQVADEL-GIGIATLYRKIKK 586 + A +L GI + + ++KK Sbjct: 433 GVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/332 (44%), Positives = 211/332 (63%), Gaps = 15/332 (4%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSS-VMVVGESGTGKEVVARAIHKLSGRRNKP 323 DE ++G M+++ LI ++A S S+ V++ GESGTGKE+VARA+H+LS R++ Sbjct: 140 DEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHRLSARKSGR 199 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+ INCAA+ E LLE+ELFGY KGAFTGA+ GK GL + A+ GT+FLDEIG+M ++LQA Sbjct: 200 FVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQA 259 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR ++ R+ +G I++D+RII++TN+NL + IA G FR+DL+YRL V+PI +PP Sbjct: 260 KLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPP 319 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER+EDI LLV YF+H + G I PD IL ++ WPGN+REL N++E V + Sbjct: 320 LRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPGNIRELKNVVERGVLI 379 Query: 504 VPSGEVIDSTLLPPNLLNN---GTTEQSDVTEVS----EAHLSLDDAGGTALEEMEKQMI 556 + + L P + N G E + ++ +S D +L MEKQ I Sbjct: 380 A------NGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDGLDARSLAFMEKQHI 433 Query: 557 REALSRHNSKK-QVADELGIGIATLYRKIKKY 587 L + ++ + A LGI TLY KIK+Y Sbjct: 434 ENVLKETSWRRTEAARVLGINRTTLYNKIKEY 465 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/507 (33%), Positives = 280/507 (55%), Gaps = 43/507 (8%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 P++ + + V V+ L E++ D ++ + ++ +V++ LE + +I Sbjct: 65 PIVREMKVVSVLLLRPKQGEKERFARDI--QYLKLLSELACQWVAEKLERETWQKKFGEI 122 Query: 162 F---ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH 218 +I ++ + +VD + R+Q +N+ + ++G+ I T Sbjct: 123 HLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKI-------TQYITK 175 Query: 219 GHMQHIVSWDDKSELIIGQLHNIQGRQLF----LMAFHQSHTSFSV---ANAPDEP---- 267 + I S +K E ++ Q+ I+G F L+ Q S+ + + ++P Sbjct: 176 EKWESIKSGKEKDETVV-QVPRIKGEAYFATIQLVKNKQGIVSYMILLKSKKTEKPEQAG 234 Query: 268 ----HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 H E ++G +++Q + R++ S ++M+ GESGTGKE+ A+AIH S R+N+P Sbjct: 235 RRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKNQP 294 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+A+NCAAIPE LLESELFGY KGAFTGA K G + AN GTLFLDEIGDM L LQA Sbjct: 295 FVALNCAAIPENLLESELFGYEKGAFTGAEKE-KPGRFELANHGTLFLDEIGDMSLYLQA 353 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 K+LR ++ + + IG++ ++D+RII+AT++NL + I +G+FREDL+YR++VIPI +PP Sbjct: 354 KILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIPP 413 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LR R+ED+ +L+ +F+ ++ L +A + ++ L ++ WPGN+REL N++ + V Sbjct: 414 LRARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVE- 472 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + G+ + LP +L + V H +EK+ + E L R+ Sbjct: 473 LQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHYQT---------RLEKRKVLELLERN 523 Query: 564 ----NSKKQVADELGIGIATLYRKIKK 586 KK+ A +LGI +ATLYR +KK Sbjct: 524 GWSTEGKKKTAADLGISLATLYRYLKK 550 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 154/323 (47%), Positives = 209/323 (64%), Gaps = 17/323 (5%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 +++VG M ++ I + AP+ +++M+ GESGTGK ++A A+H+ S RR+KPF+AINC Sbjct: 140 KKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAEAVHQNSPRRDKPFMAINC 199 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIPE LLESELFGY KGAFTGA++N KTGLI A+ GTLFLDEIGDMP+++Q+K+L+ + Sbjct: 200 AAIPETLLESELFGYKKGAFTGANSN-KTGLITMADGGTLFLDEIGDMPMVIQSKILKVL 258 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 E+ E+LP+G + VD+RIISATN++L I E FREDL+YRLNVI I +P LRER+E Sbjct: 259 ESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYYRLNVIEIRMPALRERRE 318 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LL F+ V G ++ + + WPGN+REL N++E V + GE Sbjct: 319 DIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVRELKNVVERAV-IFAGGEQ 377 Query: 510 IDSTLLPPNL-LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM----EKQMIREALSRHN 564 I LP + + T TEVS G L+ M EK +I AL+R + Sbjct: 378 ITPAELPAKIRRGDATAGPGGNTEVS---------GLQPLKAMVYDYEKDIIINALNRFD 428 Query: 565 -SKKQVADELGIGIATLYRKIKK 586 SK+ VA LGI + TLYRK+ K Sbjct: 429 GSKEMVAKTLGIDLTTLYRKMSK 451 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/360 (43%), Positives = 209/360 (58%), Gaps = 10/360 (2%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAP-DEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 QL + GR + + T+ A P D EQ+VG+C M + + I RIAP Sbjct: 108 QLDEVLGRAFEMRLAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVP 167 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V+++GESGTGKE+VARA++ S R +KPF+AINCAAIP+ LLESELFG+ KGAFTGA Sbjct: 168 VLILGESGTGKELVARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRR 227 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 + G + A GT+FLDEIGDMP QAK+LR ++ + +G + +Q D+R+I+ATN+ Sbjct: 228 -RVGKFEQAQGGTVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNR 286 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 +L+ + + KFREDL YRLN +TLPPLR+R DIE LV +F+ R+L G+ Sbjct: 287 DLSALVRDSKFREDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDA 346 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 + +L HRWPGN+REL N M Y V V GEVI LP + L D E++ Sbjct: 347 AALAVLESHRWPGNVRELQNAMRYAV-VQAVGEVITPDCLPAS-LRGAAAPPGDALELTA 404 Query: 536 AHLSLDDAGGTALEEMEKQMIREAL------SRHNSKKQVADELGIGIATLYRKIKKYEL 589 SL G T + + AL H ++KQ AD LGI TL K++ L Sbjct: 405 LITSLLRVGATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 Length = 462 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/319 (45%), Positives = 206/319 (64%), Gaps = 11/319 (3%) Query: 271 QLVGE-CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 Q++GE R+M L I +A + +V+V GESGTGKE+ ARA+H S R PF+A+NC Sbjct: 148 QILGEDSRLMDALH-TIWEVADTECTVLVTGESGTGKELFARALHDASPRAGGPFVALNC 206 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIPE ++E+ELFG+ +GAFTGA AN + G + A+ GTLFLDEIGDMPL QAKLLR + Sbjct: 207 AAIPESMVEAELFGHARGAFTGAHAN-REGRVAGASGGTLFLDEIGDMPLAAQAKLLRML 265 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + R I+P+G+ P+ +D+R+++ATNQ+L + G+FR DLFYRLNVIP+ LPPLRER + Sbjct: 266 QDRTIMPVGSDRPVDIDVRVVAATNQDLESMVEAGRFRGDLFYRLNVIPVELPPLRERGD 325 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L FLH RR G G + +R+H WPGN+RELS+L+E V + SG + Sbjct: 326 DIARLAEAFLHQANRRNGRNVTGFESAAMRAMREHYWPGNVRELSHLIERTVLLKKSGLI 385 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQ 568 ++ L + GT + V L +A+E++E+++I EAL R ++ + Sbjct: 386 AEADLR-LRVAARGTGGHQVLPTVEGLDLR------SAIEDVERRLIEEALDRTGGNRTE 438 Query: 569 VADELGIGIATLYRKIKKY 587 A LG+ TL KI+K+ Sbjct: 439 AAALLGVNRTTLVEKIRKH 457 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 173/464 (37%), Positives = 255/464 (54%), Gaps = 54/464 (11%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------FRPLTFESN 215 ++D + +G++ +D + +N +A K L + +N I G+ IR + L+ + Sbjct: 86 ILDTIGEGIIALDKSGIITMINPSAEKILNLSEN-IEGRDIRDILSAELPILKTLSAGED 144 Query: 216 FTH---------GHMQHIVSW-----DDKSELIIGQLHNIQG----RQLFLMAFHQSHTS 257 + + G ++ S DD + +G + I+ R+L H + S Sbjct: 145 YDNKEIFVTLPGGKSHYLTSGRPIKNDDGN--TVGAVAAIKDINEVRKLVHRITHPTMLS 202 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 F + ++ E +M + +IA S+V++ GESGTGKE+ ARAIH S Sbjct: 203 F-----------DDIIAESSIMNETISFAKKIAHGDSTVLLTGESGTGKELFARAIHMES 251 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++ PF+ +NCAAIPE L+ESELFGY +GAFTGA GK GL + AN GT+FLDEIG++ Sbjct: 252 PRKDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGGKHGLFELANKGTVFLDEIGNL 311 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 LQ KLLR ++ RE+ IG I VDIR+I+ATN NL + + EG FREDL+YRLNVI Sbjct: 312 NPQLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHNLEKLVNEGYFREDLYYRLNVI 371 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 PI LPPLR R+EDI L ++ L G Y ++P E+L+ + WPGN+REL N++ Sbjct: 372 PIKLPPLRNRKEDIIPLANHILGQMRTNHGGQYQ-LSPKSRELLKTYSWPGNVRELENII 430 Query: 498 EYLVNV----VPSGEVI-----DSTLLPPNLLNNGTTEQSDVTEVSEAHLSL---DDAGG 545 E VN+ + GE + D + N Q SEA +S+ D Sbjct: 431 ERAVNLANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQQYQNGQSEAEISVNYKDKDFS 490 Query: 546 TALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 L+ +EKQ++++ LS H S ++ A +LG+ T+ KIKKY L Sbjct: 491 QILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKIKKYGL 534 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 261/463 (56%), Gaps = 41/463 (8%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-FRPLTF-- 212 D + + +I N+ +GV VVD + V + TA K V ++GK + F P Sbjct: 133 DEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVKSKELLGKKLESFFPTALLL 192 Query: 213 ---ESNFTHGHMQHIVSWDDKSELIIGQLH-NIQGRQLFLMAFHQSHT---SFSV----- 260 +S ++ H S DKS II + I G + ++ + T + SV Sbjct: 193 TVLKSEKPIRNVYH--SPRDKSYAIISAVPIYINGELVAAVSTDRDITETANLSVELETT 250 Query: 261 ----------ANAPDEPH--IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 N +E ++++G+ +V+++ ++A + SSV++ GESGTGKEV Sbjct: 251 KEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVASTNSSVLIGGESGTGKEV 310 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 ARAIH++SGR+ PF+AINC+AIPE L ESE+FGY GAFTGA GK G ++ A GT Sbjct: 311 FARAIHQVSGRKG-PFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGKVELAENGT 369 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDMPL +QAKLLR ++ ++I+ +G P+ VD+RIISAT++NL + EGKFRE Sbjct: 370 LFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTMVMEGKFRE 429 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DLFYRLNV+ I LP L+ R EDI + ++ F+ + P I+ +V L + WPG Sbjct: 430 DLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIPKISMEVFHTLMNYDWPG 489 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN-GTTEQSDVTEVSEAHLSLDDAGGTA 547 N+REL N +E+LV +GE+I S+ +P ++L G ++ D E + Sbjct: 490 NIRELKNTVEHLVVFSKNGEIIMSS-IPEHILEKIGDSQYVDTPENYDLQ--------EN 540 Query: 548 LEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 ++ +E IR+A+ N K Q A L I +TLY KIK Y + Sbjct: 541 IKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNI 583 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 144/325 (44%), Positives = 212/325 (65%), Gaps = 4/325 (1%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + E +VG + + + K + + S S+V++ GESGTGKE+ A AIH S RR FI + Sbjct: 257 NFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRV 316 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLE+ELFGY KGAFTGA+ GK G + AN GT+FLDEIGDMP +Q KLLR Sbjct: 317 NCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLR 376 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 A++ RE+ IG+ I +D+RII++TN+NL Q IA+ KFREDL+YRLNV I +PPLRE Sbjct: 377 ALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREM 436 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 ++D+E L+++ + +G G++ + +IL + WPGN+REL N++E +NV G Sbjct: 437 KDDLEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAK-G 495 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAH-LSLDDAG-GTALEEMEKQMIREALSR-HN 564 +I +P LL E+ S++H ++L + + ++E EK I AL + +N Sbjct: 496 NIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNN 555 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 +KK+ A+ L I + LY+K+++Y + Sbjct: 556 NKKKAAELLNIHRSGLYKKLEEYNI 580 >UniRef50_B8G0D1 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G0D1_DESHD Length = 483 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/460 (37%), Positives = 258/460 (56%), Gaps = 33/460 (7%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF----------- 207 SK+ + ++ D+ + VV+ V +VN+ K + +++IGK + + Sbjct: 18 SKLIKILENSFDE-IFVVNKHGIVIYVNEACQKNYDLKPSDVIGKTVHYLVSEGYYTPAI 76 Query: 208 RPLTFESNFTHGHMQHIVS-----------WDDKSEL--IIGQLHNI----QGRQLFLMA 250 PL F++ Q S +D+K+EL I+ NI Q RQ Sbjct: 77 APLVFKTRKAVTLEQETKSGRKLLVTAIPVFDEKNELDFIVMNSRNITEIEQLRQDLEKT 136 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 T + + + LV + MR+ RIAP ++++++GESGTGK ++A Sbjct: 137 KEYYKTQIQQLRQKELSNQDGLVFQSEKMREFMHTAQRIAPFDTTILILGESGTGKNLLA 196 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 + IH +S RR++P+I INCAAIPEQLLESELFGY KGAFTGA +GK GLI+ A+ GTLF Sbjct: 197 KQIHTMSNRRHEPYICINCAAIPEQLLESELFGYTKGAFTGAERSGKPGLIELAHKGTLF 256 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG++PL LQAKLL+ ++ +PIG + QVDIRIISATN NL + I +G+FR DL Sbjct: 257 LDEIGEIPLSLQAKLLQLVQDHTFIPIGGTESRQVDIRIISATNCNLPKLIEQGRFRLDL 316 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRLNVI I +PP+RER +DI LL+HYFL+ + + + + + + +L+ ++WPGN+ Sbjct: 317 YYRLNVIEIEIPPVRERSDDIVLLLHYFLNKFDIKYSTSH-YFSEECLAVLQNYQWPGNV 375 Query: 491 RELSNLMEYLVNVVPSGEVIDSTL-LPPNLLNNGTTEQSDVTEVSEA--HLSLDDAGGTA 547 RE+ +L+E LV V ++ L LP + TE+S + A D+ + Sbjct: 376 REIEHLVERLVITVSENCILPKHLPLPKHAAMPEDTEKSPSALMKTALNKELRDEFTEYS 435 Query: 548 LEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 + E++ I E S +VA L I + + R ++ Y Sbjct: 436 FKIKERETILELYEELRSSYKVASILKISQSKVSRIVRTY 475 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 219/319 (68%), Gaps = 14/319 (4%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++V + +V ++L +R+A S+V++ GE+G GKE+VA+ IH+ S R +PFI INC Sbjct: 264 EIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCG 323 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFG+ G+FTGAS NGK G + AN GTL LDEIG++ LQ KLLRA++ Sbjct: 324 AIPENLLESELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQ 383 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +EI IG P Q+D++II+ TN++L + +++G+FREDL+YRL+V+P+ +PPLRER +D Sbjct: 384 DQEITRIGGVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDD 443 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L+ +++ + + G V G++ +E L + WPGN+REL N++E LV +VP +I Sbjct: 444 IPFLIRHYIRKYNEKYG-VNKGLSSSALEELVSYNWPGNVRELENMIERLVIMVPEN-LI 501 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 +++ LP + ++S+V + +LSL D A+ ++EK+M+++A+ + N+ ++ A Sbjct: 502 ETSDLPQQI------KESNVKILE--NLSLPD----AVSKLEKRMLQKAMEQSNNTREAA 549 Query: 571 DELGIGIATLYRKIKKYEL 589 LG+ +T+ RK+ KY L Sbjct: 550 QILGVAQSTVVRKLDKYGL 568 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 176/460 (38%), Positives = 258/460 (56%), Gaps = 50/460 (10%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII-GKPIRF-----RP 209 D +T I+ + VL D + F N+TA + L ++ + G+ F RP Sbjct: 204 DEYLTTISTTINRISNAVLSFDTSGSLLFSNETAERMLPTLRECLFSGEAESFLHIGRRP 263 Query: 210 LTFESN--------------FTHGHMQHIVSWDDKSELIIGQLHN-IQG--RQLFLMAFH 252 + ++N + ++ IVS KS ++I N IQ ++L L Sbjct: 264 IEGKANLHKKQQILRLGGKIYVAEYLPVIVSRRLKSIVVIVSSENSIQSAEKRLRLSKSE 323 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + +T+ S H E ++GE RV++ L + A S SSV++ GE+GTGKE+ A++ Sbjct: 324 RGYTAKS--------HFEDIIGESRVLKDTIHLARKYARSQSSVLITGETGTGKELFAQS 375 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH S R ++PF+AINCAA+P+ LLESELFGYVKGAFTGA+ GK G+ + A+ GT+FLD Sbjct: 376 IHNESSRADEPFVAINCAALPQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFLD 435 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIG+M L +QAKLLR ++ RE+ +G I VDIRIISATN+NL + + + FREDL Y Sbjct: 436 EIGEMDLNVQAKLLRVLQEREVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLLY 495 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNV+ + LPPLR R D+ LLV+ ++ R + PD +E+L + PGN+R+ Sbjct: 496 RLNVLELNLPPLRSRTGDVPLLVNAYMKRQNRPV-----TFLPDAMELLSREPCPGNVRQ 550 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L NL+E +V + G I ++ L +G TE L+D G E Sbjct: 551 LFNLLERIV-TLSDGREISASWLKNIFSFSGKTEPLPGL--------LEDTVGNC----E 597 Query: 553 KQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 + I AL + H ++ + A +LGI ATL+RK+KKY L + Sbjct: 598 QTEIEHALRKNHGNRAKTAKDLGISTATLWRKMKKYGLFS 637 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 218/319 (68%), Gaps = 14/319 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G M ++ R+I R+A + ++V++ GESGTGKE+VARAIH S RR PF+AINCAA Sbjct: 149 IIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAA 208 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP LLESELFG+VKGAFTGA + K G + A GTLFLDE+G++P+ LQ+KLLRA++ Sbjct: 209 IPRDLLESELFGHVKGAFTGAVQD-KEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQE 267 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +E+ P+G + I++D+R+++ATN +L + IAEG+FREDLFYRL+VIP+ LPPLRER+EDI Sbjct: 268 KEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDI 327 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LLV +F H G +P+++ ++ + WPGN+REL N +E ++ ++ + + I Sbjct: 328 PLLVRHFAAKH----GGASVTFSPEILAVMAAYGWPGNVRELENTVERIL-IMRNADTIH 382 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVA 570 LP + G + Q + + +L D G +LE++E++++ EAL R+N ++ A Sbjct: 383 PDDLPEK-VRRGRSPQRECRVI-----NLPDE-GYSLEQLEREIVVEALERNNWNQSSAA 435 Query: 571 DELGIGIATLYRKIKKYEL 589 L I TL +++KY + Sbjct: 436 RFLRIPRHTLIYRMEKYSI 454 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 140/300 (46%), Positives = 200/300 (66%), Gaps = 12/300 (4%) Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 R++ S+V++ GESG GKEV+AR IH+ S R PFI INC AIPE LLESELFGY KG Sbjct: 294 RVSEVDSTVLITGESGVGKEVIARTIHRNSPRAEGPFIEINCGAIPEHLLESELFGYEKG 353 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 AFTGA+ GK G+++ AN GTL LDE+GD+PL LQ KLLRA++ +EI IG + +++++ Sbjct: 354 AFTGANKEGKPGMMELANGGTLLLDEVGDLPLNLQVKLLRALQEQEIYRIGGRTAVKLNV 413 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 RI++ATN+NL Q IAE KFREDLFYRLNV+PI +PPLRER+ DI L +FL + Sbjct: 414 RILAATNKNLEQMIAEKKFREDLFYRLNVVPIHIPPLRERKSDILPLSMHFLEKFNNKY- 472 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 + + + +V ++ ++ WPGN+REL+NL+E L+ ++ E I LPP +T Sbjct: 473 NFHRLFSSEVFKLFEQYPWPGNIRELANLVERLI-IMSEQETIYPDQLPPTFFGKPST-- 529 Query: 528 SDVTEVSEAHLSLDD--AGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIK 585 S +S+D+ A E++E ++I +AL ++ S ++ D LG+ +TL RK + Sbjct: 530 ------SPLQISIDEIIPLKEAREQVESELIVKALKQYRSLRRAGDALGVAHSTLLRKAR 583 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 251/461 (54%), Gaps = 48/461 (10%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------FRPLTFE 213 +I T+I+ G++++D + V ++ + LG+ + + IG+ + P+ E Sbjct: 129 EILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIENTRMPIVLE 188 Query: 214 SNFTHGHMQHIV--SWDDKSELII---GQLHNIQGRQLF-------------------LM 249 + H + S+ S + I G++ + G+ LF L Sbjct: 189 TGKEEVAQLHKIKGSYMIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISVIEKELA 248 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + F+ AN +E ++GE + K ++ + A + S+V+++GESGTGKE+ Sbjct: 249 TYKSRFREFNKANYS----LENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIF 304 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A AIH S R PF+ +NCAAIP LLESELFGY GAFTGA GK G + AN GT+ Sbjct: 305 AHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTI 364 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGDMPL +Q KLLR I+ RE+ +G + +++IRII+ATN+NL + + EGKFRED Sbjct: 365 FLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFRED 424 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+ I +PPLRER DI L+ ++ + + L GI+ + + L+ + W GN Sbjct: 425 LYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWKGN 484 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E +N++ + E+I LP + +VS L D L Sbjct: 485 VRELENILERAINIMENSEIIQVKDLPKEITG---------KKVSMVPKKLQD----ILA 531 Query: 550 EMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYEL 589 E EK I AL + +K + A L IG +LY KI+KY++ Sbjct: 532 ESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEKYKI 572 >UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=19 Tax=Bacillus RepID=A9VKT7_BACWK Length = 709 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 138/324 (42%), Positives = 204/324 (62%), Gaps = 26/324 (8%) Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P +EQ++ + + +IA S+V++ GESG GKEV+A+AIH+L R +KPF+ Sbjct: 393 PKMEQIINQAK----------KIADFSSNVLISGESGVGKEVIAQAIHQLGNRSSKPFLK 442 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NC AIPE LLESELFGY KGAFTGA NGK G + A+ G LFLDEIG+MPL LQ KLL Sbjct: 443 LNCGAIPETLLESELFGYTKGAFTGADKNGKEGYFKRADQGILFLDEIGEMPLHLQVKLL 502 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ +E++PIG+++P++++++II+ATN++L + + G FREDLFYRLNVIP+ +P LRE Sbjct: 503 RVLQEQEVIPIGSTTPMKINVQIIAATNKSLEKMVESGTFREDLFYRLNVIPLRVPSLRE 562 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV----N 502 R ED+ +L +FL + Y + PD + +L + WPGN+REL N++E LV + Sbjct: 563 RMEDVPVLAFHFLQQLNEKYNKNY-HLTPDALNLLEFYSWPGNVRELQNMIERLVVSADD 621 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 V E + L P N + V + E AL +E+Q+I A+ + Sbjct: 622 PVIEAEFVSKFLTPGYDFNKSKPVITRVLPLQE-----------ALHSVEEQLILLAMKQ 670 Query: 563 HNSKKQVADELGIGIATLYRKIKK 586 + + + A LGI +++ RK +K Sbjct: 671 YKTTTKAAKALGISQSSVSRKYQK 694 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/340 (43%), Positives = 212/340 (62%), Gaps = 10/340 (2%) Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 H+ + + S N + + +VG+ +K L + A + S+V++VGESGTGKE+ A Sbjct: 212 HKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAH 271 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 +IH S RR PFI INC AIP +LLESELFGY GAFTGA GK G + AN GT+FL Sbjct: 272 SIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGTIFL 331 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMP+ +Q KLLR I+ RE+ +G + ++D+RII+ATN+NL + + + KFREDL+ Sbjct: 332 DEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFREDLY 391 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNVI I +P LRER+EDI L+ + + + RLG GI+ + E L + WPGN+R Sbjct: 392 YRLNVIRINVPSLRERKEDILLISDFLVKKVSHRLGICIKGISKEAKEYLCNYNWPGNIR 451 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N++E N++ S VI LP +L + V ++ + L D + E+ Sbjct: 452 ELENVIERSANLLDSDFVIKPKHLPKEIL-----KSYIVKAPTKENKYLKD----IISEV 502 Query: 552 EKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELL 590 EK++I L ++N +K + + LGI A LY+KI +Y ++ Sbjct: 503 EKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV 542 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/467 (35%), Positives = 255/467 (54%), Gaps = 60/467 (12%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH- 218 KI + +++ G++V+D + +N+T LGV Q IGK + ES H Sbjct: 122 KILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSIGKHV---TEVIESTRMHI 178 Query: 219 ---------GHMQHIVSWDDKSELII---------GQLHNIQGRQLF-------LM---- 249 +Q + K + +I G+L + G+ LF L+ Sbjct: 179 VAKTGIAETAQLQKV-----KGKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYKKI 233 Query: 250 -----AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + + F +N+ + ++G+ + + K L + A + S+V++ GESGT Sbjct: 234 RNIENEYKKYKGQFDESNSASYS-FDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGT 292 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A AIH S R FI +NCAAIP LLESELFGY GAFTGA GK G + A Sbjct: 293 GKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELA 352 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GT+FLDEIGDMPL +QAKLLR ++ RE+ IGA+ ++D+R+ISATN++L + I EG Sbjct: 353 DGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEG 412 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FREDL+YRLNV+ + +PPLRER+EDI++L Y L +++LG + + + L + Sbjct: 413 EFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNY 472 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG-TTEQSDVTEVSEAHLSLDDA 543 +W G +R+L N++E VN+V E+I+ P N+++N E SD+ ++ Sbjct: 473 KWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDSDLNKL---------- 522 Query: 544 GGTALEEMEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 + ++EK +I E L N K + A +L I +LY KI K+ + Sbjct: 523 ----INQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/317 (46%), Positives = 202/317 (63%), Gaps = 10/317 (3%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 Q V MR+L ++ RIA S+V++ GESG GKE+VA IH S RR +P I INC Sbjct: 625 QCVIHSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSNSNRREQPMIKINCG 684 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGY GAFTGAS GK G+ + A+ G LFLDEIGD+PL LQ KLLR ++ Sbjct: 685 AIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGDLPLSLQVKLLRVLQ 744 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +EIL +G + PI+VD+RII+ TN NL + + + FR+DLFYRLNVIPIT+PPLRER+ED Sbjct: 745 DKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNVIPITVPPLRERRED 804 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I +L ++FL ++ G + ++ ++ ++ WPGN+REL NL+E L VV S + Sbjct: 805 IPILANHFLDNFNQKHG-MNKKLSGSILAYFMEYDWPGNVRELENLVERL--VVTS---L 858 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 + T+ +L + + ++ + L D ALE E++++ A S S +VA Sbjct: 859 NQTITAHDLSAWSELKPENKSDNEHGIVRLQD----ALENTERRILENAFSVCKSTYEVA 914 Query: 571 DELGIGIATLYRKIKKY 587 LGI T+ RK KY Sbjct: 915 RALGISQPTVVRKAAKY 931 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 140/317 (44%), Positives = 214/317 (67%), Gaps = 7/317 (2%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + +V E MR + L + + S+V+++GESG GKEVV + + + S RR++PFI +NC Sbjct: 264 DDIVVESPQMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQIVVRSSERRDEPFIKVNC 323 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE LLESELFGY KG+FTGA GK G+ + A+ GT+ LDE+ ++PL LQ KLLRAI Sbjct: 324 GAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEVAEIPLNLQVKLLRAI 383 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +EI+ +G + P+++D+RII+ATN++L + + G+FREDLFYRLNVIPIT+PPLRER+E Sbjct: 384 QEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRLNVIPITVPPLRERRE 443 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L+ FL + + + +AP+ VE L + WPGN+REL N++E +V V+ + Sbjct: 444 DIPALIELFLCKYNEKY-RLNKTLAPETVERLVSYDWPGNVRELQNIVERMV-VLSRDDE 501 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV 569 + LP L + G T+ +VS + L D AL E+EK+++ +AL ++ + ++ Sbjct: 502 VGPDALPLQLKSVGKTDADFHVDVS-GVVPLKD----ALFEVEKKLVVKALQKYGTTRRA 556 Query: 570 ADELGIGIATLYRKIKK 586 A+ LG+ +T+ RK ++ Sbjct: 557 AEALGVDQSTVVRKYQR 573 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 141/321 (43%), Positives = 210/321 (65%), Gaps = 13/321 (4%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +LVG R M Q+++LI ++AP+ S+V+V+GE+GTGKE+VARA+H+ S R KPF+A+NC Sbjct: 153 ELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELVARAVHQQSLRAEKPFVAVNCG 212 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 A+PE L+ESELFG+ KG+FTGA + + GL + A+ GT+FLDEIG++P +QAKLLR +E Sbjct: 213 ALPESLIESELFGHRKGSFTGAD-DHRVGLFEVAHGGTIFLDEIGELPKSMQAKLLRVLE 271 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 + EI +G ++ VD+R++ AT++NL + + G FREDL YR+N + +PPLRER +D Sbjct: 272 SGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDLMYRINTFELHIPPLRERLDD 331 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 IE L + L L + P+ V++L KH WPGN+REL+N++E+ + + Sbjct: 332 IEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNVRELANVIEHASILCDKAPIT 391 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQV 569 L P L+ Q ++ A + AG +L ++E Q I EAL RHN +K + Sbjct: 392 PENL--PQRLSGRIKPQ-----LTRARI----AGPISLRDLEMQAIHEALDRHNGNKPEA 440 Query: 570 ADELGIGIATLYRKIKKYELL 590 A+ELGI + TLY K+ + L Sbjct: 441 AEELGISLKTLYNKLNQTTAL 461 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 254/471 (53%), Gaps = 69/471 (14%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFESNFTHGHMQ 222 ++D + G+LV+D + V+ +N + GV +IIGKP+ RP Q Sbjct: 5 AILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRP----------EAQ 54 Query: 223 HIVSWDDKS------------------------ELIIGQLHNIQGRQLFL---------- 248 + + DKS + ++G + +G+Q L Sbjct: 55 LVSTLKDKSVRVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQK 114 Query: 249 ----MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + SF A+ H E ++G + ++++ + + A +P V++ GESGT Sbjct: 115 QQIQWLQQKVEASFQAAH-----HFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGT 169 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A+AIH+ ++PF+ INCAAIP LLESELFGY GAFTGA NGK GL + A Sbjct: 170 GKELFAQAIHRGGKNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELA 229 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDEIG++PL LQ+KLLR ++ I +GA +V RII+ATNQNLA +++G Sbjct: 230 DNGTLFLDEIGELPLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKG 289 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT--RRLGSVYPGIAPDVVEILR 482 FREDL+YRL V + +PPLRER+EDI LL L + + +G V I+ + +E L+ Sbjct: 290 LFREDLYYRLCVFQLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQV--NISDEALERLK 347 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+REL N +++ + ++ V+ + LPP+L + + ++ L Sbjct: 348 HYHWPGNVRELKNALQFALCMMDE-PVLHPSHLPPHLATDQWQRSTPMSFTPPTSLK--- 403 Query: 543 AGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 LEE E+Q+I L+ ++ KKQ A L I +ATLY K+KK+ L Sbjct: 404 ---AGLEEAERQLITNVLANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 141/317 (44%), Positives = 211/317 (66%), Gaps = 14/317 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+ + MR++ L+ ++APS +SV + GESGTGKEVV+RA+H LS RR+KPFIAINCA+ Sbjct: 143 LIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCAS 202 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP L+ESELFG+ +GAFTGA + G+ + A+ GTLFLDE+G++P+ LQAKLLR +E Sbjct: 203 IPATLIESELFGHERGAFTGADQR-RPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEE 261 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 ++ +G I+VD+R++ ATN++L Q I G+FREDL++RLNV I LPPLRER++D+ Sbjct: 262 GKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDV 321 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 +LV +F+ G G+ P+ +E+L+ + WPGN+REL N +E V ++ GE+I Sbjct: 322 PILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAV-ILCDGELIT 380 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVA 570 LPP++ E H + G +L+ +E++ I +L R+ N+K + A Sbjct: 381 REHLPPDMAGKS----------PERH-TFRLPFGLSLDAVEREYILGSLQRNGNNKARTA 429 Query: 571 DELGIGIATLYRKIKKY 587 + LG+ TLY K+ +Y Sbjct: 430 EVLGVSEKTLYNKLNRY 446 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/359 (42%), Positives = 225/359 (62%), Gaps = 14/359 (3%) Query: 232 ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 E I+G L N+ R+L Q D +V R++ L +A Sbjct: 115 EKILGVLENVLERELLRKENQQLKEELGKVTLTD-----AIVFASDRFREVYELTLEVAA 169 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S ++++++GESGTGKE++A AIH+ S RR + ++INCAA+ + LLES+LFG+V+GAFTG Sbjct: 170 SEANILILGESGTGKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTG 229 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A+ N K GL++ A++GTLF+DEIGDM LMLQAKLLR I+ + +P+GA+ +VDIR ++ Sbjct: 230 ATTNQK-GLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVA 288 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NL + +AEG+FREDL+YRLNVI I LPPLRER+EDIE L +FL + +R+ Sbjct: 289 ATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVD 348 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT 531 + ++++ + WPGN+REL N++E V + SG V+ + LP N +T + Sbjct: 349 RFTREALDLMLGYSWPGNIRELENVVERAVILARSG-VVTTDHLPMWKKNVASTAATGPA 407 Query: 532 EVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 +H + +LE +E++ IR+ L+R K + A+ LGI TL RKI ++ L Sbjct: 408 SALSSHQLV------SLENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGL 460 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 160/452 (35%), Positives = 254/452 (56%), Gaps = 54/452 (11%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHM 221 F ++++++QGV+ ++ E +V N A K G+++ +I+GK I + F SN Sbjct: 197 FKAILNHINQGVISINKEGKVTTFNPGAEKITGIIEKDILGKDI----INFMSN------ 246 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFL--------------------MAFHQSHTSFSVA 261 ++ I+ QLHNI ++ A Q + + Sbjct: 247 TKLIDVVKTGMPILSQLHNIGKTEILTNDIPIIVDDKVVGAVSTFEAAAKIQEYEQKIRS 306 Query: 262 NAPDEPHIEQ-----LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 N D+ +I + ++GE +++ +K+ + A + S+V++VGESGTGKE+ A+ IH Sbjct: 307 NLRDKGYIAKYNLSDIIGESEIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIHLS 366 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R+N PF+A+NC AIP L+ESELFGY +GAFTGAS GK GL A+ GT+FLDEIG+ Sbjct: 367 SKRKNGPFVALNCGAIPGNLIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGE 426 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 +P+ QA+LLR I+ RE+ P+G++ I +D+RII+A N++L + I +G FR DL+YRLN+ Sbjct: 427 LPIEFQARLLRVIQEREVRPLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNI 486 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 + + +P L ER+EDI ++ +FL L R V I+ + IL+++ WPGN+REL N+ Sbjct: 487 LSMRVPTLMERREDIGIIFKHFLKLMCSRFNKVVK-ISEKAINILKEYNWPGNIRELENI 545 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 E LV V+ E+ D + E D + +S +LE +++ I Sbjct: 546 TERLV-VLAEDEITDELV---------KEELGDFIHYKDEKVS-------SLEYLKQNQI 588 Query: 557 REALSRHNSKKQV-ADELGIGIATLYRKIKKY 587 + LS + + A +LGI L+R +KKY Sbjct: 589 LKVLSECKGNQTLAAQKLGISRTHLWRLLKKY 620 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 147/321 (45%), Positives = 219/321 (68%), Gaps = 16/321 (4%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++G+ + ++++ ++ +A S ++V++ GESGTGKE+VARAIHK S R++KPFI ++C Sbjct: 135 EIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKSKPFIIVDCT 194 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 IPE LLESELFG+ KGAFTGA+ KTGLI+ AN GT+FLDEIG++P++LQ KLLR ++ Sbjct: 195 TIPENLLESELFGHEKGAFTGATER-KTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQ 253 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +EI IG++ I+VD+R+ISATN++L + I EG FREDL++RLNV+ I LPPLRER+ED Sbjct: 254 EKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKED 313 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I LLV++FL+ ++ P + P+V+ L + WPGN+REL+N++E V + PSG +I Sbjct: 314 IPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIERAVVLSPSG-LI 372 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQV 569 LP + E + T + E +L E+EK +I +AL S ++ + Sbjct: 373 SIKHLPRRI-----QENTGWTIIKENTFNLL--------EVEKALILKALNSTGWNQTKA 419 Query: 570 ADELGIGIATLYRKIKKYELL 590 A+ LGI L K+K + L Sbjct: 420 AEILGISRKQLRTKMKHHGFL 440 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 139/305 (45%), Positives = 200/305 (65%), Gaps = 9/305 (2%) Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 + +++A S+V++ GESG GKE+VA IH LS R P I INC AIPE LLESELFGY Sbjct: 193 MAAQVAKVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGY 252 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 GAFTGA GK G+ + A GTLFLDE+G++ L LQ KLLR ++ E+L +G PI Sbjct: 253 EPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIP 312 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 VD+RI++ATN++L + + + KFR+DL+YRLNV+ I +PPLRER+EDI LL +FL + Sbjct: 313 VDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINK 372 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 + G APDV++ L + WPGN+REL N++E ++ + S E+ T+ P + N + Sbjct: 373 KYG-FNKRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEI--RTIHLPGNIKNLS 429 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKI 584 + Q+D+ L A+E +EK +I +AL ++ S ++VA L + +T+ RKI Sbjct: 430 SLQNDIMFSEIMPLK------KAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKI 483 Query: 585 KKYEL 589 KKY+L Sbjct: 484 KKYKL 488 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 254/457 (55%), Gaps = 32/457 (7%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRP------ 209 +S + + + G++V+D + + +N + LG I+G P++ F P Sbjct: 220 LSNRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGIPVKELFEPGQRVEE 279 Query: 210 -LTFESNFTHGHM--------QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT---S 257 L +F++ + Q +VS + I+ + + G +F+ + + Sbjct: 280 MLDSGRDFSYSELTLGIGEAVQCLVS----GKAIMDEQGKVNGGVIFINPINHIKSLVNR 335 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 FS A A H ++G+ + + ++ R+ S A S S++++ GESGTGKEV A+AIH S Sbjct: 336 FSGAQA--SLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQAIHNAS 393 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 RR+ PFIA+NC AIP +LL SELFGYV GAFTGA G+ G + A+ GT+FLDEIG+M Sbjct: 394 SRRDAPFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIFLDEIGEM 453 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL Q LLR ++ R + IG I VD+R+I A+N+ L + + +G FR DLFYRLNVI Sbjct: 454 PLGKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDLFYRLNVI 513 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 ITLPPLR+R+EDI LL H+FL +++LG P + +V+ L+ + WPGN+REL N++ Sbjct: 514 AITLPPLRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPGNVRELQNVV 573 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH-LSLDD---AGGTALEEMEK 553 E +VN+ I LP + + ++ ++ LSL +E E+ Sbjct: 574 ERMVNIAEESR-ISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRKEMEQEREQ 632 Query: 554 QMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 + I L H QVA LG+ T+YRKIK+Y + Sbjct: 633 EEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIKQYRI 669 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 146/324 (45%), Positives = 206/324 (63%), Gaps = 12/324 (3%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +E + +VG R M+ L L+ + A S V + GESGTGKE+VA+AIH LS R +P+ Sbjct: 142 EESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPY 201 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 I +NCAA+ E LLESELFG+VKGAFTGA + K G +AA+ G +FLDEIGD+P+ +Q K Sbjct: 202 IQVNCAALNESLLESELFGHVKGAFTGALQHRK-GRFEAAHKGDIFLDEIGDLPMAMQVK 260 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR +E + +G + I VD+R I+ATN+NL IA G FREDLFYR+NVIPI LPPL Sbjct: 261 LLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPL 320 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER+ED+ LV +F+ +R+ G++P+ + I ++ WPGN+REL + +EY V+ Sbjct: 321 RERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSY-VL 379 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 G+ I S LP L + G Q+ + L A L++ +KQ + EAL + + Sbjct: 380 AEGDRIRSENLPEYLKDGGNDFQA---------VDLPPAPAENLQQRQKQELIEALKQSS 430 Query: 565 -SKKQVADELGIGIATLYRKIKKY 587 +K Q A LGI T+ +++KY Sbjct: 431 GNKSQAARLLGINRVTVLNRMRKY 454 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 137/323 (42%), Positives = 213/323 (65%), Gaps = 12/323 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 ++ ++G+ R M Q+ ++ + P+ ++V++ GESGTGKE++ARAIH S R++KPFIAI Sbjct: 138 KMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAI 197 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP+ L+ESELFGY GAFTGA+ K GLI++A+ GTLFLDEI ++PL Q+KLLR Sbjct: 198 NCAAIPDTLIESELFGYEPGAFTGANTR-KIGLIESADKGTLFLDEIAEIPLSTQSKLLR 256 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E+ IG+ +VD+RII+ATN+NL++ + + KFREDL+YRL VI + +PPLRER Sbjct: 257 VLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRER 316 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI LVH+F+ +++ G GI +E L + WPGN+REL +++E + + Sbjct: 317 KEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIRELESVIERAIIICEKD 376 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SK 566 ++ N+ E +T + + + D G EE+EK++I++AL + N Sbjct: 377 KIT---------FNDIQDELRVITPKNLFDIDIPDE-GINYEELEKELIKKALIKSNFVI 426 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A LG+ T + ++KK+ L Sbjct: 427 AKAARLLGMSYDTFWYRLKKFGL 449 >UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q4K4Y9_PSEF5 Length = 464 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 257/460 (55%), Gaps = 46/460 (10%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--------------- 206 F +++ + GV + D + + VNQ + G+ ++G+P++ Sbjct: 15 FEELLNALHDGVYITDGQGQTLKVNQAYERLTGLNGAELLGRPMQELVKSGVISQSASLR 74 Query: 207 ----FRPLTFESNFTHGH-----MQHIVSWDDKSELIIG------QLHNIQGRQLFLMAF 251 RP++ + +HG I++ D ++ +L I+ + L Sbjct: 75 VLQDGRPVSVMQSLSHGKKLLVSATPILAADQSIRYVVSTVRDMTELLRIKRERDELQQL 134 Query: 252 HQSHTSFSVANAPDEPHIEQ--LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 Q TS + +A + Q L+ + V ++ ++A V++ GE+G GK +V Sbjct: 135 KQLRTSTARLHAGQRDDLLQSPLMADQEVSGRVFAQARQVADCDVKVLLQGETGVGKTLV 194 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+ IH S R +PF+A+NC A+PE L+E+ELFGY GAFTGA + GK GL++ A+ GTL Sbjct: 195 AQFIHNASARAREPFLALNCGALPENLIEAELFGYAPGAFTGAGSKGKRGLLELAHNGTL 254 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGD+PL +Q KLL+ IE +P+G +VD+RIISAT+ +L Q +AEGKFR D Sbjct: 255 FLDEIGDLPLAVQVKLLKVIEENRFIPVGGLELKEVDVRIISATHHDLKQRVAEGKFRAD 314 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFL-HLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 L+YRLNV+PI +P LRER E+I L+ Y+L H + R V + + +E+L ++ WPG Sbjct: 315 LYYRLNVVPIAIPALRERSEEIGPLLEYYLEHFNQRYQRQVQWSL--EALELLGEYAWPG 372 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N++E LV V SG+VI++ LP +L+ +Q+ T+ S L L Sbjct: 373 NIRELINVVERLV-VTCSGQVIEALDLPEDLIE----QQARNTDDSRLPLR------KVL 421 Query: 549 EEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 E E+Q IR AL H + + A LG+ AT+ +K+K++E Sbjct: 422 ENAERQAIRAALQLHKTTRLAAKALGVSQATVVQKMKRWE 461 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 267 bits (682), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 146/319 (45%), Positives = 210/319 (65%), Gaps = 17/319 (5%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 +E +VG MR++ + R+AP+ ++V+V GESGTGKE+VARA+H S R +KPF+ +N Sbjct: 166 LEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPVN 225 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAAI + LLESELFG+ +GAFTGA+ + G+ + AN GTLF+DEIG+ QAKLLRA Sbjct: 226 CAAITDTLLESELFGHARGAFTGAT-RARRGMFEEANGGTLFIDEIGETSPGFQAKLLRA 284 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ EI +G SSP+QV++RII+ATNQ+L + IAE +FREDLFYRLNV+P+ +PPLRER+ Sbjct: 285 LQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERR 344 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 ED+ LL +FL +R GS + P+ V L H WPGN+REL N++E + E Sbjct: 345 EDVPLLAAHFLQRFVQRTGSERV-LTPEAVASLVAHDWPGNVRELENIIEQAAALCTGRE 403 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKK 567 + + + ++ A ++L D A+E+ E++ I AL+R N Sbjct: 404 IRAADV----------QIEARAAPAGGAGVTLAD----AVEDTERRAITAALARCGNDLG 449 Query: 568 QVADELGIGIATLYRKIKK 586 +VA +LGI TL+RK+K+ Sbjct: 450 RVARDLGISGTTLWRKMKR 468 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 267 bits (682), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 136/317 (42%), Positives = 201/317 (63%), Gaps = 9/317 (2%) Query: 281 QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340 +K L ++AP +VM++GESG+GKE++A +IH S R +KPF+ INCAAIPE ++ESE Sbjct: 158 HVKDLAQKVAPVDVNVMILGESGSGKELLAHSIHSASTRSSKPFVCINCAAIPENIMESE 217 Query: 341 LFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS 400 LFGY GAFT A +NGK G ++ AN GT+FLDEIGDMP +QAKLLR ++ E+ +G+ Sbjct: 218 LFGYEPGAFTNAKSNGKLGKLEIANNGTVFLDEIGDMPPFMQAKLLRFLQEGELEKVGSV 277 Query: 401 SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460 P+ V++R+I ATN+N+ + + +G FR DL+YRL+ I + +PPLRER EDIELL +FL Sbjct: 278 KPVSVNVRVICATNRNIQKMVEDGIFRADLYYRLSSIILKIPPLRERPEDIELLCDHFLK 337 Query: 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL 520 T + I + +EIL+ + WPGN+REL +L+E L + G +I + LP L Sbjct: 338 SITEKWAIPLKKIDKEALEILKNYYWPGNVRELQHLLETLC-CITDGNIIKAKALPSYLF 396 Query: 521 NNGTTEQSDVTEVSEAHLSLDDAGGT-------ALEEMEKQMIREAL-SRHNSKKQVADE 572 + E+ LS ++ G + EK+++ E L + +K++ A+ Sbjct: 397 GQSDSAMLKNNELRRISLSNINSDGNNKYICSDVINSKEKELLEEVLRNTGGNKRKAAEM 456 Query: 573 LGIGIATLYRKIKKYEL 589 LGI TLY K++KY + Sbjct: 457 LGIHRTTLYYKLRKYNM 473 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 250/461 (54%), Gaps = 61/461 (13%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHG 219 K T++D++D G+ V + ++ +NQ A L + I+G Sbjct: 195 KSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGME--------------- 239 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP-HIEQLVGECRV 278 ++ I W E + + ++ + H + S DE +++ +V R Sbjct: 240 GIKLIEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCMIRE 299 Query: 279 MRQLKRLISR-----------------------------IAPSPSSVMVVGESGTGKEVV 309 +++++RL+++ I+ SPS+V+++GESGTGKEV Sbjct: 300 IKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVF 359 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A++IH S RR++PF+AINC A+P L+ESELFGY GAFTGA G G + A+ GTL Sbjct: 360 AQSIHNHSERRDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTL 419 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG+MPL +QA LLR +E ++ +G + I VD+RII+ATN++L + FR D Sbjct: 420 FLDEIGEMPLDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGD 479 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+P+ LPPLRER+ DI LL+ YF+ + +L + D+++ + + W GN Sbjct: 480 LYYRLNVLPLILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGN 539 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E L+N SGE+ L L++ + E S E+ LE Sbjct: 540 IRELENVIENLMN---SGEL---NFLERVELSSTSNESSPRVYSLESE---------PLE 584 Query: 550 EMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 +MEK+ I + L+++ Q A+ LGIG TLYRK+ KY++ Sbjct: 585 DMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAKYKI 625 >UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHA0_MOOTA Length = 752 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/320 (46%), Positives = 208/320 (65%), Gaps = 13/320 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +V R++R L L R+A S+V+++GESG GKEVVAR IH LS R PF+ INC A Sbjct: 441 IVASPRMLRVLY-LAERVARVDSTVLILGESGVGKEVVARLIHALSERGKGPFVKINCGA 499 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFGY +GAFTGA+ GK G ++ GT+FLDEI ++PL LQ KLL+ ++ Sbjct: 500 IPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQE 559 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + ++ +G I+++IRIISATN+NL Q + EG FREDL+YRLNVIP+T+PPLRER EDI Sbjct: 560 QRLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPEDI 619 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 E L+ +F+ RR I+ L + WPGN+REL N++E L +V E++ Sbjct: 620 EALIDHFMDRLNRRYKQ-EKRISRRARRYLLAYPWPGNVRELHNVIEQLFVLVEGTEILP 678 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDD--AGGTALEEMEKQMIREALSRHNSKKQV 569 L P + + S +H+ + D A+EE+EKQ++ +AL ++ S QV Sbjct: 679 EHL--PYYIRDDPARYS-------SHMLVKDIIPMKEAIEEVEKQLLLKALEKYRSTYQV 729 Query: 570 ADELGIGIATLYRKIKKYEL 589 A++LG+ +T+ RKIKKY L Sbjct: 730 AEKLGVNQSTVVRKIKKYGL 749 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 265/471 (56%), Gaps = 62/471 (13%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ-NNIIGKP------------ 204 + K +I++ G+++ D E R+ NQ+ + G ++ +++GK Sbjct: 18 LKKELDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVADLLGKTALELEKEGIILS 77 Query: 205 -----IRFRPLTFESNFTHGHMQHIVS---WDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 + PLT + N G I S +DD+ GR LF +A + T Sbjct: 78 QSKIILGKDPLTLKQNIRTGVELFITSKPAYDDR------------GRFLFYVATIRDMT 125 Query: 257 SFS-----VANAPDEP-----HIEQLVGE----------CRVMRQLKRLISRIAPSPSSV 296 S V D+ + QL G+ R M+ + R+A + ++V Sbjct: 126 ELSRLRQEVEETKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICERAIRVAQTDTNV 185 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ G SG+GKE++A+ IH S R++ PF+ INC AIPE LLESELFGY KGAFTGA G Sbjct: 186 LISGPSGSGKEMIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYEKGAFTGAGRQG 245 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K GL++ A+ GT+ LDEIGD+ ++Q KLLRAI+ + I +G+++PI++++RII+ATN+N Sbjct: 246 KIGLMEMADLGTILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKLNVRIIAATNKN 305 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + E FREDL+YRLNVIPI +PPLRER+E I L +FL ++ G+ ++P+ Sbjct: 306 LEKMVEENLFREDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQKHGT-DKSLSPE 364 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE- 535 V ++ WPGN+REL NL+E +V V+ +V+ LP N +++G +SD++ E Sbjct: 365 VCACFEEYDWPGNVRELENLIERMV-VISDEKVLTPYWLPRN-VSSGQAPRSDMSPKQEC 422 Query: 536 -AHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIK 585 A +SL A +A E+ I ALS H S ++ A LG+ +T+ RK+K Sbjct: 423 TAEISLKQARESA----ERDAICRALSLHGSIRKAAKSLGVDHSTVVRKMK 469 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/452 (36%), Positives = 243/452 (53%), Gaps = 57/452 (12%) Query: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVS---- 226 +G LVVD +R+ + + + LGV + IGKP+ H M ++ Sbjct: 21 KGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPV-------TEVIPHSRMSEVLKSGEP 73 Query: 227 -----WDDKSEL-------------IIG-----------QLHNIQGRQLFLMAFHQSHTS 257 W+ K E +IG ++ + GR +L A + S Sbjct: 74 EIAQVWEVKGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDAELNYYRS 133 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 +E ++G + ++K ++ IA + S++++ GE+GTGKE+ A A+H S Sbjct: 134 EVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFAHALHLSS 193 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 RR I +NCAAIP++LLESELFGY +GAFTGA GK G + AN GTLFLDEIG+M Sbjct: 194 KRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLFLDEIGEM 253 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 P LQAKLLR ++ EI IG + P+QVD+RI++ATN+NLA+ + +FREDL+YRLNVI Sbjct: 254 PARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDLYYRLNVI 313 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 + +PPLRER EDI LV +F+ RLG GI P+V E+ + + WPGN+REL N++ Sbjct: 314 ELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHWPGNVRELYNVL 373 Query: 498 EYLVNVVPSGEV--IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 E +NV+ + D P +L++ + S + L +E ++ Sbjct: 374 ERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRSS--------------NTLRNLEAKI 419 Query: 556 IREALSRHNSKKQVADE-LGIGIATLYRKIKK 586 I L N K A E LGI +T+Y K+K+ Sbjct: 420 IHRVLESCNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/328 (45%), Positives = 210/328 (64%), Gaps = 11/328 (3%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +E +E L G+ + ++ +K I +IAP +V++VGESGTGKEV A+ IH+LS R+NKPF Sbjct: 129 EEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSRKNKPF 188 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +AINCA++P +LLESELFGY KGAFTGA ++ K GLI+ AN GTLFLDEIG+MP+ LQAK Sbjct: 189 VAINCASLPAELLESELFGYKKGAFTGAVSD-KKGLIEEANGGTLFLDEIGEMPMPLQAK 247 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR +E + I P+G++ I+VD+RIISATN+NL + I +G FREDL+YRL I I +P L Sbjct: 248 LLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIKMPSL 307 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER+EDI LLV L + I+PD ++ L + + GN+REL NL+E V ++ Sbjct: 308 RERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKAV-IL 366 Query: 505 PSGEVIDSTLLPPNLLN----NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 GE ++ P N + ++ V E + L + L +EK +I +AL Sbjct: 367 SDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSFPEEGVDLKE----VLSRIEKALIFKAL 422 Query: 561 SRHNSKK-QVADELGIGIATLYRKIKKY 587 + KK + AD L + ++ KY Sbjct: 423 EKAEGKKSKAADILRLTFREFRYRLSKY 450 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 265/468 (56%), Gaps = 42/468 (8%) Query: 156 DNISKIFATMIDNMD---QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------- 205 ++++K++ T+ M+ G++V+D + + NQ+ L + N++GKP+ Sbjct: 251 ESVTKLYNTLQSVMEIAYDGIIVIDKKGVITMANQSIADFLHKSRENMVGKPVEDIIENS 310 Query: 206 RFRPLT-------FESNFTHGHMQHIVSW-----DDKSELIIGQL--------HNIQGRQ 245 R R + + F +G+ H+VS D K+ +G + N+ + Sbjct: 311 RLRKVIKTGVAELHQLQFINGN-PHVVSRMPIVRDGKALGAVGMILFSNFKDVRNLAQKF 369 Query: 246 LFL---MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + L +A++++ ++N + +Q++ +++K A S SS+++ GES Sbjct: 370 IRLDQKVAYYKNQIRNDMSN---KITFDQIITSHEAFKKIKERAEIAAQSSSSILITGES 426 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE++A++IH+ R+K + +NCAAIP LLESE FGY GAFTGA GK G + Sbjct: 427 GTGKELMAQSIHEAGVSRDKRLVKVNCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLA 486 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A+ GTLFLDEIGDM LQ+KLLR ++ + PIG++ V R+I+ATNQ+L Q + Sbjct: 487 LADGGTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQ 546 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 E +FR DL+YRLNVI +PPLRER +DI LLVH+F+ + LGS I+ D + +L Sbjct: 547 EKRFRGDLYYRLNVIHFHIPPLRERPQDIILLVHFFIEKYNHILGSAIQDISDDAMTVLL 606 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 +H WPGN+REL N++E + N V G ++D LPPNL E+ + ++ + LS Sbjct: 607 EHTWPGNVRELENVVERVANFV-KGNLVDIDDLPPNL---KEKEKKSPSFMAGSPLSTKQ 662 Query: 543 AGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 + ++ +K I+ AL + +K + A LGI + LY K+ +++L Sbjct: 663 RLHKSRDDHDKLAIQSALREADGNKAKAAKILGISRSWLYTKMARFDL 710 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 170/475 (35%), Positives = 257/475 (54%), Gaps = 59/475 (12%) Query: 155 GDNISKIFAT---MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN-NIIGKPIRFRPL 210 G N+++ F +ID ++ +D+ENR+ N+ A + LG Q + +PI Sbjct: 199 GQNLAENFQPWRELIDCSSWALIFLDEENRIAAANKVACQELGCGQEEQWLNRPI----- 253 Query: 211 TFESNFTHGHMQHIVSWDDKSE-----LIIGQLHNIQGRQLFLMAFHQSHTSFSVANA-- 263 E ++ DD + I +LH+ QG + M + + S +A Sbjct: 254 --EEVLIDKRDSAYLTRDDSGQPKPPQKIRFKLHDSQGGAIRSMELIRKN-SLELALGRY 310 Query: 264 ------------------PDEP--------HIEQL--VGECRVMRQLKRLISRIAPSPSS 295 P++P H +++ +G+ +++K L+SR +P PSS Sbjct: 311 RRVLLLDPGLPAHGGPVNPEQPVSSYLLNNHSQEVEFLGKGEEWKKIKELVSRTSPFPSS 370 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V+++GE+GTGKEV+AR IH+LS R+ F+A+NC AIP +LL+SELFGYV GAFTGA + Sbjct: 371 VLLLGETGTGKEVLARTIHRLSQRQGN-FVAVNCGAIPRELLQSELFGYVGGAFTGARSG 429 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 G G + A+ GTLFLDEIG+MP+ +Q LLR ++ R + I ++ P VD+RII+ATN+ Sbjct: 430 GSVGKFEHAHKGTLFLDEIGEMPMDMQVSLLRFLQERTVTKINSNYPKPVDVRIIAATNK 489 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 N+ + +G FREDL+YRLNVI I +PPLRER+EDI +L +F+ ++ + I Sbjct: 490 NMYDLVGQGLFREDLYYRLNVIEINIPPLRERKEDIPMLAQFFVAELCKQFNILPKKIDE 549 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 +E L +H WPGN+REL N+ME V V+ +G+ I +LP + T Sbjct: 550 ATMETLDRHVWPGNVRELKNVMEKAV-VMTAGDTITPDVLPKQIFQ---------TLEPP 599 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 + D+ G A E EK I L +H Q A L I TLYR++ K+ + Sbjct: 600 SPQPADNPGTEAEELSEKDYILHMLEQHGGNVAQTAKALNIARNTLYRRLLKHNI 654 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/323 (43%), Positives = 204/323 (63%), Gaps = 18/323 (5%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + L G +V + + A S S V++ GESGTGKE+ A AIH+ S RR KPFI I C Sbjct: 258 DDLTGSSKVFAATIDMAKKAAKSDSPVLLTGESGTGKELYAHAIHQASQRRGKPFIKIGC 317 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 A++PE+LLESELFG+ KGAFTGA K G ++ AN GTLFLDEIG+M LQ KL+R + Sbjct: 318 ASVPEELLESELFGHEKGAFTGA-VKTKLGKVELANGGTLFLDEIGEMNPYLQGKLMRLL 376 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +E +G S I+ D+R+I+ATN +L + +G+FRE+L++ LNVI + LPPLR+R+E Sbjct: 377 QDQEFERVGGSETIRSDVRVITATNIDLKSLVRKGRFREELYFLLNVIELNLPPLRQRRE 436 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI +LV +F+ R+LG G+APD +++L + WPGN+REL N++E + V + EV Sbjct: 437 DIPVLVEHFIGKLNRKLGKKVRGVAPDALQLLSGYDWPGNIRELENVIERAMVSVET-EV 495 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----S 565 I P + E + TE+ L++ME+ M++ AL+R+ Sbjct: 496 IGRQHFSPYIGQFTNAETTQCTEI------------VPLDKMEQMMLKAALARYGESLEG 543 Query: 566 KKQVADELGIGIATLYRKIKKYE 588 KK+ A L I +ATLY K+KKY+ Sbjct: 544 KKKAAQALNISLATLYNKLKKYK 566 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/354 (43%), Positives = 218/354 (61%), Gaps = 19/354 (5%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 +L I + L + Q +S+ N +VG +++ + K L +R A S S+V Sbjct: 217 ELSRINEWEQLLEQYQQGTARYSINN---------IVGNNQLICEQKALAARAARSVSTV 267 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ A AIH +S RR F+ +NCAA+PE LLESELFGY +GAFTGA G Sbjct: 268 LITGESGTGKEIFAHAIHNMSPRRKGSFVKVNCAAVPETLLESELFGYNEGAFTGALKEG 327 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + AN GT+FLDEI DM L +QAKLLR ++ +E+ IG+ S +V+IR+I+ATNQN Sbjct: 328 KPGKFELANHGTIFLDEIADMSLSMQAKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQN 387 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 LA+ ++E KFREDLFYRLNVI + L PLR+R +DI LL H+ LH + LG+ I P+ Sbjct: 388 LAELVSENKFREDLFYRLNVIVLNLLPLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPE 447 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V++ + WPGN+REL N +E VN G I +P N++ ++ + + + Sbjct: 448 VIQSFCSYDWPGNIRELENTIERAVNFC-EGNTITINDIPDNII----QRKNHYSSTTGS 502 Query: 537 HLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 H SLD+ G + EK +I E L +K + A L I + LYRK+ KY++ Sbjct: 503 HSSLDNILG----KQEKALIEEVLKNCGGNKSKAAKTLNIHRSVLYRKLHKYDI 552 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/332 (44%), Positives = 214/332 (64%), Gaps = 21/332 (6%) Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 FS AN ++G+ +VM+ + LI +++ S +V++ GESGTGKE+VARAIH S Sbjct: 163 FSFAN---------IIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNS 213 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R ++PF+AI C AIPE LLESELFG+ KGAFTGA K GL + A+ GTLFLDEI ++ Sbjct: 214 DRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGA-VQQKQGLFEVADGGTLFLDEIAEL 272 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 P M+Q KLLR I+ E +G + ++VD+R+++ATN++LAQ + E +FREDL+YRLNVI Sbjct: 273 PPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVI 332 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD-VVEILRKHRWPGNLRELSNL 496 + LPPLR+R+EDI LLV +FL +L + PD V+ + WPGN+REL N Sbjct: 333 QVGLPPLRDRREDIPLLVSHFLQ----KLTPGFSTTIPDGVMRRFLDYHWPGNIRELENT 388 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E V + GE+ + +L P L +GT +Q +TE+ E L LDD G +EK ++ Sbjct: 389 VERCVVLGGKGEITEDSLPPHMLCISGTGDQQ-LTELPEEGLDLDDYLGA----IEKDIL 443 Query: 557 REALSRHNS-KKQVADELGIGIATLYRKIKKY 587 +AL R +K+ A+ L I ++ ++ K+ Sbjct: 444 LKALDRTGGVRKRAAELLHITFRSIRYRLAKF 475 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/322 (44%), Positives = 210/322 (65%), Gaps = 20/322 (6%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +L+ + +M + + +A + ++V++ GESGTGK V+A+ IH S RR+KPF+ INCA Sbjct: 228 RLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCA 287 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP+ LLESELFGYVKGAFTGA + K G ++ A+ GTLFLDEIG++P LQ+KLL I+ Sbjct: 288 AIPDNLLESELFGYVKGAFTGAVKD-KPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQ 346 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E +G + +VD+RII+ATN++L+Q + EGKFREDL+YRL VI I +P LRER+ED Sbjct: 347 EKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKED 406 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L++YF+ L++++ GI+P+ V +L + +PGN+REL N++E V ++ G+ I Sbjct: 407 IPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAV-ILAKGKFI 465 Query: 511 DSTLLPPNLL-NNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQ 568 + + LP ++ N Q+D+ E E EKQ I L N +K + Sbjct: 466 EVSDLPDEIVYNTKILTQNDLDE----------------EIDEKQKILRVLESVNWNKSK 509 Query: 569 VADELGIGIATLYRKIKKYELL 590 A L I TL+RK+KKY L+ Sbjct: 510 AAKILNIDRVTLWRKLKKYGLV 531 >UniRef50_C5CF13 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF13_KOSOT Length = 446 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/325 (45%), Positives = 205/325 (63%), Gaps = 25/325 (7%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++L+G + +K+LI IAP +V++ GESGTGKEV+AR IHKLSGR K F+ INC Sbjct: 139 DELLGVSESIVSIKKLIENIAPKKVTVLIQGESGTGKEVIARMIHKLSGR--KEFVDINC 196 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE L ESE+FGY KGAFTGA + K GL++ A+ GTLFLDEI ++P+ LQ KLLR I Sbjct: 197 GAIPENLFESEIFGYEKGAFTGA-GDSKKGLVEEADRGTLFLDEISELPITLQPKLLRFI 255 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 E IG++ + D+RII ATN++L + + EGKFREDLFYRLNV+ I LPPLRER E Sbjct: 256 ETGTFQRIGSTKRKKTDVRIICATNRDLEKLVEEGKFREDLFYRLNVVRIKLPPLRERPE 315 Query: 450 DIELLVHYFLHLHTRRLG-SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 DI +L F+ + LG P I+ ++ L + WPGN+REL N + ++ V S E Sbjct: 316 DIAILAKQFVKDISAELGLRKRPKISETFIQALMNYHWPGNVRELRNCLLSILAVHDSSE 375 Query: 509 VIDSTL----LPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 ++ + L + N+ D+T LEE+EK+ IR+ L +++ Sbjct: 376 TLEEWMLFDVLGSRIDNSRDASNEDLT----------------LEELEKRYIRKLLKKYS 419 Query: 565 -SKKQVADELGIGIATLYRKIKKYE 588 +K +VA LGI +TLY K+K++E Sbjct: 420 GNKTKVAQVLGISKSTLYEKLKRWE 444 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/321 (47%), Positives = 202/321 (62%), Gaps = 12/321 (3%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E +V + R M LK L + A S S+V++ GESGTGKE A AIH+ S RR FI INC Sbjct: 159 EHIVTQNRQMIYLKELARKAAESNSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITINC 218 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP +LLESELFGY GAFTGA GK G + N GT+ LDEIG MPL +QAK+LR + Sbjct: 219 AAIPNELLESELFGYDAGAFTGAKKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRIL 278 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 E+RE IG + IQ+D+RII+ATN+ L + I EG+FR+DL+YRLNVIPI +PPLRER E Sbjct: 279 ESREFERIGGNDRIQLDVRIIAATNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIE 338 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI +L L LG + + +E+L+K++WPGN+REL N +E +N+V G++ Sbjct: 339 DIPILAQRILEKLAVDLGIEMKELTFETIEVLKKYQWPGNVRELRNTLERALNIV-QGDM 397 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV 569 I LP +L+ E S + S + L D T +E I+ AL N K V Sbjct: 398 IYPEDLPGHLI-----ESSSKSSYSHSLLLKDIMAKTEIE-----AIQSALRDSNGNKSV 447 Query: 570 -ADELGIGIATLYRKIKKYEL 589 A +LGI LY+KI+ YE+ Sbjct: 448 AAKQLGIHRTALYKKIQAYEM 468 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 139/324 (42%), Positives = 200/324 (61%), Gaps = 9/324 (2%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +E +L G+ R +R ++ ++ A + + +++GESGTGKE+ ARAIH+ S R+N PF Sbjct: 138 EETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEASARKNGPF 197 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 I +NC +IP L ESELFGY G FTGA GK G I+ A+ GTLFLDEIG++PL +Q K Sbjct: 198 IPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTLFLDEIGELPLDMQVK 257 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ + I IG +S ++++R I+ATNQ++ + + E FR DL+YRLNVI IT+PPL Sbjct: 258 LLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSDLYYRLNVIQITMPPL 317 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 R R +DI +L YFL + P +APD + L+ + WPGN+REL NLME +V + Sbjct: 318 RVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPGNVRELRNLMERMVILS 377 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH- 563 + ++LL T+ S L ++ E MEKQ+I +AL + Sbjct: 378 EKPFIDRASLL--RFFQGNETQPSGSAIPESGTLPVEK------ENMEKQLIEKALRKAG 429 Query: 564 NSKKQVADELGIGIATLYRKIKKY 587 +K A ELGI TLY+K+KK+ Sbjct: 430 GNKSAAAKELGISRVTLYQKLKKF 453 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/316 (45%), Positives = 212/316 (67%), Gaps = 5/316 (1%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G R+ ++ + APS ++V+++GESGTGKE++AR++H+ S R +KPFIAINCAA Sbjct: 155 VIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLHEGSARADKPFIAINCAA 214 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE +LE ELFGY KGAFTGA+++ + G +AA+ GTLFLDE+G+MP +Q KLLR ++ Sbjct: 215 IPESILEGELFGYEKGAFTGATSS-REGRFEAASGGTLFLDEVGEMPRHVQVKLLRVLQE 273 Query: 392 REILPIGASSPIQ-VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 EI +G S + +DIR+I+ATN LA+ + EG+FREDL+YRLNVI I +PPLRER++D Sbjct: 274 GEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRLNVISIAVPPLRERRDD 333 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I LLV +FL ++ + G G D ++ L ++ WPGN+REL N +E V V+ GEV+ Sbjct: 334 IPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELENAVERAV-VLSRGEVL 392 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 D LP + +G ++ + +L A GT L E+E +I E L K++A Sbjct: 393 DEAALPFE-VRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAVIHETLRHTKGDKRLA 451 Query: 571 DE-LGIGIATLYRKIK 585 + LGI T+YR+++ Sbjct: 452 AKLLGIATRTIYRRLE 467 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 157/378 (41%), Positives = 223/378 (58%), Gaps = 26/378 (6%) Query: 220 HMQHI------VSWDDK-SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 HMQ + + D K + LII + N RQ +Q++ +F +Q+ Sbjct: 299 HMQFVQMDVKPIESDKKITGLIIILMDNKTFRQRMSKISNQAYYTF-----------DQI 347 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +GE +++ K+ A S S+V++ GESGTGKE+ A+AIHK S RR PF++INCAAI Sbjct: 348 IGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAIHKASPRREGPFVSINCAAI 407 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P +L+ SELFGYV+GAFTGA G G + ANTGT+FLDEIG+MPL +Q LLR +E R Sbjct: 408 PTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLDEIGEMPLHIQTILLRVLEER 467 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 + IG++ VD+R+I ATN+NL + + +G FR DL+YR+NV+ I LPPLRER DI Sbjct: 468 RVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYYRINVLHIHLPPLRERITDIP 527 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 ++V Y+L R L +AP+ + L H W GNLREL N +E +N G+ ++ Sbjct: 528 IIVDYYLDYFNRFLDKKVREVAPETMAFLINHSWEGNLRELRNTIECGINNA-MGKTLEL 586 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADE 572 LP + D E S H S+ + E +K+M+ + + +K VA+E Sbjct: 587 EHLPRYFFEK-EEKMFDDREGSLGHESVYEF------EEKKKMLALMIKFNGNKSAVAEE 639 Query: 573 LGIGIATLYRKIKKYELL 590 +GI +TLYRK+K Y LL Sbjct: 640 IGISRSTLYRKLKSYNLL 657 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 149/331 (45%), Positives = 213/331 (64%), Gaps = 19/331 (5%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G+C+ ++++ I+++APS ++ +++GESGTGKE+VARAIH+ R +PFI +NCAA Sbjct: 204 IIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCAA 263 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 +PE LLESEL G+ KGAFTGA K G + A+ GTLFLDEIG++PL LQAKLLR ++ Sbjct: 264 LPENLLESELLGHEKGAFTGAVGQ-KKGRFELADGGTLFLDEIGELPLALQAKLLRVLQE 322 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R +G S I VD+RII+ATN++L + EG FR DL+YRLNV+P+ LPPLRER+EDI Sbjct: 323 RTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDI 382 Query: 452 ELLVHYFL---HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 LL+ +FL + H RR A V+ L ++ WPGN+REL NL+E LV +V GE Sbjct: 383 PLLLDHFLRESNRHNRRRVK----FAAAVIRRLNEYSWPGNVRELQNLVERLVIMV-DGE 437 Query: 509 VIDSTLLPPNLLN---------NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 V++ LP L + G +Q + + + A G +L EMEK+ + A Sbjct: 438 VVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAA 497 Query: 560 LSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 L RH + + A +LGI + +I+KY + Sbjct: 498 LRRHGWVQTRAARDLGITPRQMGYRIRKYAI 528 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/324 (44%), Positives = 207/324 (63%), Gaps = 9/324 (2%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E LVG +R++ R+I +A S ++V+V GESGTGKE+VARA+H S RR +PF+A+NC Sbjct: 151 EGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELVARALHARSPRRAQPFVALNC 210 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 A+ E LLESELFG+VKGAFTGA + K GL AA+ GT+FLDEIGD+P Q +LLR + Sbjct: 211 GALTETLLESELFGHVKGAFTGAQRDQK-GLFDAADGGTIFLDEIGDIPPATQVRLLRVL 269 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + E+ +G++ ++VD+R+I+AT+++L + + GKFREDLFYRLNVI I LP LR+R + Sbjct: 270 QEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVD 329 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ LL H+FL + RLG +APD +E+L +RWPGN+REL N +E V V+ GE Sbjct: 330 DVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPGNVRELENAIERAV-VLCRGEA 388 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE----MEKQMIREALSRH-- 563 + LPP + + + + L + TA E+ EK + E L RH Sbjct: 389 VTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKEQSLRRFEKGYV-ETLMRHCD 447 Query: 564 NSKKQVADELGIGIATLYRKIKKY 587 N+ A + G+ + R ++KY Sbjct: 448 NNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 161/450 (35%), Positives = 257/450 (57%), Gaps = 24/450 (5%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLT 211 ++IF ++N ++ +L DD+ ++ N ALK + + ++IG + F Sbjct: 205 NEIFDAALENTEEIMLFSDDDGKIIRTNMNALKIIELFGRDLIGSQVEDVLGEQPFFKSV 264 Query: 212 FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQL---FLMAFHQSHTSFSVANAPDEPH 268 E+ T H+ + + K +L + + I+ + +++ ++ A +P Sbjct: 265 AETGNTLSHIDFQLKYT-KKKLFLTSIKPIKSKDKISGYIVLLKETDHIKKAAKSPYAAM 323 Query: 269 I----EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + + ++G +LK + + A S++++ GESGTGK+V A+AIH R N P+ Sbjct: 324 VKFTFDTIIGSSPQSMKLKSMAKKFAHFNSNILIQGESGTGKDVYAQAIH-FENRPNGPY 382 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 IA+NCAAIP+ L+ SELFGY GAFTGA GK G I+ AN GTLFLDEIGDMPL LQA Sbjct: 383 IAVNCAAIPQNLIASELFGYEGGAFTGAERQGKPGKIELANGGTLFLDEIGDMPLELQAV 442 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR +E + I+ +G S I VD R+I+ATN+NL + +FREDL+YR++V +++PPL Sbjct: 443 LLRVLEDKMIMHVGGSRYIPVDFRLITATNKNLLDLVKNNQFREDLYYRISVFKLSVPPL 502 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER DI L+ +F+ +++ G P ++ +L ++ WPGN+R+L N + Y V + Sbjct: 503 RERGSDIVQLIEHFIRIYSSNQGIDEPILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMS 562 Query: 505 PSGEVIDSTLLPPNLLN----NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 G +I LP +L+ +G T E S + LD+ +++E+EK+ I +AL Sbjct: 563 NEG-IIRPENLPEEILSYQPPSGLTLAQPEPEPSPNEIILDNT--PSMKEIEKKAIMKAL 619 Query: 561 SRHNSK-KQVADELGIGIATLYRKIKKYEL 589 N+ + A LG+ +TLYRKIK+YE+ Sbjct: 620 HESNNHIRGAAKILGLSKSTLYRKIKEYEI 649 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/322 (44%), Positives = 208/322 (64%), Gaps = 17/322 (5%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 + ++G R +R S++AP+ ++V+++GE+GTGKEV A+AIH S R KPF+A+N Sbjct: 140 FDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQAIHNNSKRNGKPFVALN 199 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 C+A +LLESELFGY GAFT A+ + K GLI+ ANTGT+FLDEIG+MPL LQ+KLLR Sbjct: 200 CSAFSRELLESELFGYKAGAFTNANRD-KKGLIEEANTGTIFLDEIGEMPLDLQSKLLRV 258 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 +E E + +G + P +V++RII+ATN++L + +G FREDL+YRLNV ITLPPLRER+ Sbjct: 259 LETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYYRLNVFAITLPPLRERK 318 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 +DI L YF+ + + ++ + P +E L+ H W GN+REL N++E V ++ G+ Sbjct: 319 KDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIRELKNVLERAV-IMAGGD 377 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK-QMIREALSRHNSKK 567 + LP +L + + + LS D L +EK +IR N+K Sbjct: 378 DLAVEHLPLDL---------QIADKASTPLSAFD-----LASVEKLHIIRVLYHTKNNKT 423 Query: 568 QVADELGIGIATLYRKIKKYEL 589 + A L IG+ATLYRKI++Y L Sbjct: 424 EAARLLNIGLATLYRKIEEYGL 445 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 193/302 (63%), Gaps = 14/302 (4%) Query: 290 APSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAF 349 A + S+V+++GESGTGKE+VA+AIH S RRNKPFIAINC IP LL SELFGYV GAF Sbjct: 354 AATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAF 413 Query: 350 TGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRI 409 TGA G G + AN GTLFLDEIG+M L +Q LLR I+ +E++ IG I VD+RI Sbjct: 414 TGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRI 473 Query: 410 ISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSV 469 I+ATN++L + + +G FREDLF+RLNV+PI LPPLRER+EDI LLV +F+ + Sbjct: 474 IAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKP 533 Query: 470 YPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD 529 +P I D +E L ++ WPGN+REL N++E ++N + V+ + LP + + Q Sbjct: 534 FPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQC-TKPVLTAADLPEEIFQPSCSSQ-- 590 Query: 530 VTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYE 588 + + + E++KQ I EAL + N + A LGI +T YR++ K+ Sbjct: 591 ----------VRENVDISRNEIKKQSIIEALKQCNGNISKAARYLGISRSTFYRQMDKWN 640 Query: 589 LL 590 + Sbjct: 641 IW 642 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 153/450 (34%), Positives = 250/450 (55%), Gaps = 39/450 (8%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR----------------- 206 +ID + G+L ++ +++ N K + I+GK IR Sbjct: 88 AIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEYIVGKNIRQLLGFDAPIINLLKTGK 147 Query: 207 -FRPLTFESNFTHGHMQHIVSW----DDKSELI--IGQLHNIQGRQLFLMAFHQSHTSFS 259 + + + + +I S DDK + + + L +I +++ + Sbjct: 148 DYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTLAAVASLKDI----------NEAIEMTN 197 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 V + ++ + ++G M + +++ +A S++++ GESGTGKE+ A+AIHKLS R Sbjct: 198 VITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGESGTGKELYAKAIHKLSSR 257 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 +K F+AINCAA+P+ L+ESELFGY KG+FTGA GK GL +AA+ GTLFLDEIG++ L Sbjct: 258 SSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLFKAAHNGTLFLDEIGELSL 317 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQAKLLR ++ I IG++ ++D+RII+ATN+NL I++ FREDL+YRLNVIPI Sbjct: 318 SLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMISKNTFREDLYYRLNVIPI 377 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +P L++R EDI +LV++F+ +++G G +E L WPGN+REL N++E Sbjct: 378 YIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKLVNSNWPGNVRELKNVVER 437 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 +N+ + + L+ N+ SD E + + L D +E EK+ + A Sbjct: 438 AMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFN-FNFKLKD----VVEAAEKKALISA 492 Query: 560 LSRHNSKKQVADELGIGIATLYRKIKKYEL 589 + ++ S ++ A LG+ T+ K+ KY++ Sbjct: 493 IKKYKSCRKAAKALGVSHTTIINKLNKYKI 522 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 181/252 (71%), Gaps = 2/252 (0%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + P + +VG+ +M + LIS++APS +SV++ GESGTGKE VA IH+LS R++KPF Sbjct: 331 ESPVFDSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPF 390 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+P L+ESELFG+ KGAFTGA+ + G + A+ GT+FLDEIGDMPL +Q K Sbjct: 391 VKVNCAALPINLIESELFGHEKGAFTGATER-RIGRFEQADGGTIFLDEIGDMPLEVQVK 449 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ REI +G + PI+++IR+I+ATN+NL + IAEGKFR D++YRLNV PI +P L Sbjct: 450 LLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPAL 509 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER EDI LVH+F+ R+ G GI+ + +L + WPGN+REL N++E V ++ Sbjct: 510 RERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYGWPGNIRELENVIERSV-LL 568 Query: 505 PSGEVIDSTLLP 516 G ID+ LP Sbjct: 569 AKGNSIDTVYLP 580 >UniRef50_C2W6V6 Sigma54 specific transcriptional regulator, Fis n=1 Tax=Bacillus cereus Rock3-44 RepID=C2W6V6_BACCE Length = 472 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 267/477 (55%), Gaps = 61/477 (12%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH 218 SK ++D+++ G+ +VD + +VNQ K + ++IG+ I L E FT Sbjct: 10 SKYLLKILDSLESGMNIVDKNGTIIWVNQACCKIFNKRKEDLIGRNIFV--LKKEGAFTP 67 Query: 219 GHMQHIVSWDDKS------ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD------- 265 ++ ++ +KS E+I G + G ++ Q + + VA+ D Sbjct: 68 SVIEMVLQ--NKSTVTTVQEIIGGNKMTVTGE---IILDEQENPLYFVAHGHDIRNWIKN 122 Query: 266 ---------EPHIEQ--------------------LVGECRVMRQLKRLISRIAPSPSSV 296 P ++Q +G +V L +I R+A S+V Sbjct: 123 ISQLGWEELAPVLKQHLLEIKKINTQYIISKDEQFFIGHGKVNHLLAEIIDRVASVDSTV 182 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+G GK VVA+ IH LS R N+PF+ INCAAIP+ LLESELFGY KGAFTGA++ G Sbjct: 183 LINGETGVGKNVVAKRIHDLSERNNQPFVHINCAAIPDSLLESELFGYHKGAFTGANSKG 242 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K+GL++ A GT+FLDEI ++PL LQ KLL+ ++ + +PIG S I+ DIRII+ATN+ Sbjct: 243 KSGLVKIAEKGTIFLDEISELPLHLQPKLLQLLQDKTYMPIGGSQLIKADIRIITATNRK 302 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 + + EGKFR DL+YRL+V+PI +PPLRER+EDI +H++L + +R ++ Sbjct: 303 IEDMVQEGKFRADLYYRLHVLPINIPPLRERKEDIFPFLHFYLQKYNKRFNQTRT-LSRQ 361 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 +++L++++WPGN+REL + +E LV ++ E I LP ++ V +EA Sbjct: 362 TIDVLQRYQWPGNIRELEHTVEQLV-IMAKKEEISIHDLPERFVS--------VNIETEA 412 Query: 537 HLSLDDAG--GTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 SL + +E +EK+MI +A+ + + ++ A LGI +L R++KKY + N Sbjct: 413 LESLKEGNNLNEIIERIEKRMIEQAMKENKTTRKTATVLGITQTSLIRRLKKYNIRN 469 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 132/306 (43%), Positives = 200/306 (65%), Gaps = 13/306 (4%) Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 L +++A + ++++ GESG GKEV+A+ IH S R+ +P I +NCA+IPE LLESELFGY Sbjct: 180 LAAKVANTNCTILIQGESGVGKEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGY 239 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 +GAFTGA GK G + AN GT+ LDEIGDM L +Q+KLLR ++ +E+ +G + I+ Sbjct: 240 EEGAFTGARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIK 299 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 +D+R+I+ATNQNL + + + +FR DL+YRL+V+PI +P LR R+EDI LV YF+ R Sbjct: 300 LDVRVIAATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIE---R 356 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 G + P +L ++ WPGN+REL N++EY + +V +G++++ P L +G Sbjct: 357 NGGDEGTDLTPGAARMLEEYGWPGNVRELQNVIEYAM-IVKTGDILEIKDFPQYLRGDGA 415 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA-DELGIGIATLYRK 583 + + L D A+E++EK MI+ AL R+N K +A +ELG+ + Y K Sbjct: 416 EDGP----AEDGPCRLKD----AVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEK 467 Query: 584 IKKYEL 589 ++KY L Sbjct: 468 LEKYGL 473 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 162/448 (36%), Positives = 246/448 (54%), Gaps = 46/448 (10%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHI 224 ++N +LV+D+ R+ VN + K LG + ++IG+ ++ + Q I Sbjct: 149 FLENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGR---------RADEIFDNSQEI 199 Query: 225 VSWDDKSELIIGQLHNIQGRQ----------------------LFLMAFHQSHTSFSVAN 262 + + I G+ +Q ++ L + H+ + F +++ Sbjct: 200 LFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENVAALIALKMHEG-SQFYISS 258 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 P E ++G +R+ RL A S + V+++GE+GTGK++ ARAIH+ SGR+ Sbjct: 259 PPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRKG- 317 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+AIN A+P +L+ SELFGYV GAFTGA GK G + A GTLFLDEIGDMP+ +Q Sbjct: 318 PFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQ 377 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 LLR +E ++++ IG I +D+RII+ATN +L + + E KFREDL++RL V+ I L Sbjct: 378 VYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLC 437 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+ DI LL +F+H +++LG I P + +L + WPGN+REL N+ E+ VN Sbjct: 438 PLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELRNVAEWAVN 497 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + + S L P+ L+ T + + S T+L E+EKQ I + L Sbjct: 498 IAEVNTISVSHL--PSYLSGSQTIRENSNSFSS----------TSLIELEKQEISQLLEH 545 Query: 563 HNSK-KQVADELGIGIATLYRKIKKYEL 589 + +VA LGI TLYRK+ KY L Sbjct: 546 YGGNITKVAKALGIARNTLYRKLYKYGL 573 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 146/329 (44%), Positives = 206/329 (62%), Gaps = 10/329 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++GE + MR+ K L A S SSV++ GE+GTGKE+ A++IH S R +KPFIAI Sbjct: 225 NFTDIIGESQQMRKAKELGEAAASSDSSVLICGETGTGKELFAQSIHNASYRCSKPFIAI 284 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+P L+ES LFGYV+GAFTGA G TG+ + AN GTLFLDEI +M L LQ+KLLR Sbjct: 285 NCAALPPSLIESNLFGYVEGAFTGAKKGGATGVFEKANNGTLFLDEISEMDLDLQSKLLR 344 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E+ IG I +++RII+ATN+NL I +G+FR DLF+RLNVI + LPPLR+ Sbjct: 345 VLQEKEVTRIGGRKVIPLNLRIIAATNRNLEDMIQKGQFRRDLFFRLNVIEVKLPPLRDM 404 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI LLV+ + G G+ + +E+L + WPGN+REL N +E N++ Sbjct: 405 KEDIPLLVNETIIKMNSIFGKAIKGVDKEALEMLINYDWPGNVRELYNCIERAFNLIGDD 464 Query: 508 EVIDSTLLPPNLLN-NGTTEQSDVTEVSEAH---LSLD-DAGGTALEEM----EKQMIRE 558 I L N NG T Q+ + E+ + ++LD D G +L+++ EKQ+I Sbjct: 465 NYIRKKHLNFKFNNGNGITAQNYMEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQVIEA 524 Query: 559 ALSR-HNSKKQVADELGIGIATLYRKIKK 586 L + + A L I ATL+RK+KK Sbjct: 525 VLKEVKGIRAKAAKRLNISPATLWRKMKK 553 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/319 (44%), Positives = 204/319 (63%), Gaps = 13/319 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G M ++ RLI A SV++ GESGTGKE+VAR IH S RR+ F+AINCAA Sbjct: 145 IIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQIHLKSPRRDNSFVAINCAA 204 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPEQ++ESELFGY KGAFTGA K GL + AN GT+FLDE+ + L LQAKLLR ++ Sbjct: 205 IPEQIIESELFGYQKGAFTGAE-RAKPGLFETANGGTIFLDEVNNASLSLQAKLLRVLQD 263 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +G + P V++R+++ATN+++ IA+ FREDL+YRL VI I +P LR+R++D+ Sbjct: 264 ATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYRLRVIEIHIPALRDRRDDV 323 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL +YF+ + +R G++ V+ L +H WPGN+REL N+++ + ++ G+VID Sbjct: 324 PLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVRELENVIQRAL-ILCQGKVID 382 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVAD 571 +LPP E S TE+S ++D LEE+E IR+ L N + + Sbjct: 383 EGVLPP--------EISRGTELSVR--AIDHMQPQTLEEVEVYFIRKTLRETNGDRALCA 432 Query: 572 E-LGIGIATLYRKIKKYEL 589 E LGI +TL+RKIK+Y + Sbjct: 433 EILGIDKSTLWRKIKRYSI 451 >UniRef50_Q314G6 Two component transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=Q314G6_DESDG Length = 488 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 136/256 (53%), Positives = 179/256 (69%), Gaps = 4/256 (1%) Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 + +A EP +LVGE R M+QLKR I+ +A S +V+V GESGTGKE+VAR +H+L R Sbjct: 148 IISAGGEPG--ELVGEGRAMQQLKRTIAAVAQSDYTVLVRGESGTGKELVARLVHRLGNR 205 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 +PF+A+NC AIPE LLESELFG+VKGAFTGA + K GL A+ GTL LDEIGD+ Sbjct: 206 AGRPFMAVNCPAIPENLLESELFGHVKGAFTGADRDHK-GLFAVADKGTLHLDEIGDISA 264 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 +Q KLLR ++ EI P+GAS VD+R++++TNQ+L IA+ FREDL+YRLNV+ + Sbjct: 265 PIQTKLLRCLQDGEIRPVGASRSETVDVRVVASTNQDLEARIADKSFREDLYYRLNVLTV 324 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 TLPPLRER EDI LLVHY L +G I+PDVVE + + WPGN+REL N + Sbjct: 325 TLPPLRERVEDIPLLVHYLLRKACTEMGLEEKEISPDVVEWMTRRTWPGNVRELQNFVRR 384 Query: 500 LVNVVPSGEVIDSTLL 515 L V +G ++D ++ Sbjct: 385 L-TVFCAGRLVDMDII 399 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/318 (44%), Positives = 199/318 (62%), Gaps = 19/318 (5%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +VG C+ MR + + I +IAP+ SV++ GE+GTGKE++AR IH+ S R PFI INC A Sbjct: 314 IVGACQGMRDVYKRIDKIAPTDISVLITGETGTGKELIAREIHRRSTRAKGPFITINCGA 373 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFG+VKGAFTGA A K G QAA GTLFLDEIG+MPL LQ KLLRA++ Sbjct: 374 IPENLLESELFGHVKGAFTGAVAT-KAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQE 432 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + + +G + VDIR+++ATN+ L + + FREDL+YRLNV+ + LPPLRER ED+ Sbjct: 433 KVVYKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDV 492 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 +L +FL + R S G P +RK+ WPGN+REL N ++ V + D Sbjct: 493 VVLGRFFLQKYAREFSSKARGFTPSATVSMRKYGWPGNIRELENRLKKAVVLA------D 546 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVA 570 LL P+ L+ + + +A EE +K+ I E L+R+N ++ + A Sbjct: 547 KPLLGPDDLDLKPENLEPIMPLLQAK-----------EEFQKRYINEVLARNNGNRTKTA 595 Query: 571 DELGIGIATLYRKIKKYE 588 +LG+ T++R ++K E Sbjct: 596 KDLGVDPRTIFRHLEKLE 613 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/322 (44%), Positives = 209/322 (64%), Gaps = 5/322 (1%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 Q++GE +M+Q+ R ++R+A S +SV + GESGTGKEV+A+AIH S R PFI +NCA Sbjct: 143 QIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCA 202 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE L+ESE FG+ KGAFTGA+ + G + A+ GTL LDEI ++PL +QAKLLRAI+ Sbjct: 203 AIPETLIESEFFGHEKGAFTGANFK-RLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQ 261 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E +G S PI+VD+R+IS +N+++ IA REDL+YRLNV+PI LPPLR+R ED Sbjct: 262 EQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPED 321 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L HYFL + + ++ L + WPGN+REL+N++E V + + E+ Sbjct: 322 ILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEIT 381 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQV 569 L N N+ + +S+ L+ G T L+E+EK++I E L ++HN++ + Sbjct: 382 PEHLYIEN--NHPNLPLRTASTLSQNTLTSLPVGMT-LQELEKRLIIETLQAQHNNRTKT 438 Query: 570 ADELGIGIATLYRKIKKYELLN 591 A+ LGI + TL K+ +Y + N Sbjct: 439 AEVLGISVRTLRNKLNEYNMKN 460 >UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRH6_SYNAS Length = 592 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 208/327 (63%), Gaps = 6/327 (1%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 D+ +++ E M ++ + RIA S +V++ GESG GKEV+A+ IH S RR F Sbjct: 268 DDLRANEMITESPTMYRIIEMSRRIAGSEVTVLIQGESGVGKEVLAKLIHVWSKRRG-AF 326 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 I +NC AIP+ LLESELFGY +GAFTGA+ GK G+ + A GTLFLDEI D+PL LQ K Sbjct: 327 IKVNCGAIPQHLLESELFGYNRGAFTGANREGKPGIFELAAEGTLFLDEIEDLPLDLQVK 386 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 L+ ++ R + +G + I++D+R I+A+N+ L + +AE KFREDLFYRLNV+PIT+PPL Sbjct: 387 FLQVVQDRAFIRLGGTRVIKLDVRFIAASNRELNKLVAERKFREDLFYRLNVVPITIPPL 446 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 R+R+ED+ LLV++FL+ + + G V +AP ++ + WPGN+REL N++E LV + Sbjct: 447 RQRKEDVPLLVNHFLNRYNAKYG-VEKTMAPALLSNFMNYPWPGNIRELKNMIERLV-IT 504 Query: 505 PSGEVIDSTLLPP--NLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 SG +ID + N+ + T+Q+ E L +EE EK ++ AL + Sbjct: 505 CSGNIIDVEAMGTKLNISSRNLTDQTVAPEAGHKEEPLSTL-KEVVEEAEKNILSGALKK 563 Query: 563 HNSKKQVADELGIGIATLYRKIKKYEL 589 + + +Q+ LGI + +K+KKY L Sbjct: 564 YRNSRQIGRVLGISHTAVLKKLKKYHL 590 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 210/319 (65%), Gaps = 20/319 (6%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++L+G+ + M L+ I+R+A + SV+V GESG GKE+VARA+H+ S R ++P +++NC Sbjct: 307 DELIGDSKPMDDLRSRIARVARATGSVLVRGESGVGKELVARAVHRSSNRSDRPMLSVNC 366 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AA+P L+ES+LFG+ KGAFTGA ++ G Q A+TGTLFLDE+G+M L QAKLLR + Sbjct: 367 AALPRDLMESQLFGHKKGAFTGADSD-HVGWFQQAHTGTLFLDEVGEMTLEGQAKLLRIL 425 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 E LP+G + + VD+R+I+ATN++LA+F+ EG+FREDL+YRL+V + +PPLRER Sbjct: 426 EGHPFLPVGGTKEVSVDVRVIAATNRDLAEFVREGRFREDLYYRLSVFELYIPPLRERGS 485 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L+ +F+ R+ G ++ D E L ++WPGN+R+L N+++ V V+ G + Sbjct: 486 DIRKLIDFFVDHFRRQHGRPSLTLSVDAREKLEGYQWPGNVRQLRNVIDSAV-VMCEGSI 544 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQ 568 I LP +L G + + E+ ++ E+++I+EAL R + + Sbjct: 545 I----LPDDL---GLRDVGNAAELESLR----------MDYWERRLIQEALKRTSGNVPE 587 Query: 569 VADELGIGIATLYRKIKKY 587 A LG+G ATLYRKI++Y Sbjct: 588 AAKLLGLGRATLYRKIEEY 606 >UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLP4_9FIRM Length = 451 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 144/320 (45%), Positives = 207/320 (64%), Gaps = 14/320 (4%) Query: 206 RFRPLTFESNFTHG-HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP 264 R R L ++F +++ I+ DK++ + ++ ++L + +SH S V N Sbjct: 45 RMRILDHYADFLSAQYVRDIIQLIDKNQRYKNRAAQLE-QELSRVESSRSHQSPDV-NLQ 102 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 H + ++G + R+ R A S S+V++ +SGTGKE++A++IH SGR N PF Sbjct: 103 AVYHFDDVLGSAPSLLSAIRIAKRFADSVSTVLIQAQSGTGKELMAQSIHNASGRANGPF 162 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +A+N AAI E LL+SELFGYV+GAFTGAS +G +GL + AN GT+FLDEIGD PL Q K Sbjct: 163 VAVNFAAITESLLDSELFGYVEGAFTGASRHGASGLFERANHGTIFLDEIGDAPLSFQVK 222 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ REI +G++ PI +D+RII+ATNQ+L + + +GKFREDL+YRL+V+P+TLPPL Sbjct: 223 LLRVLQEREIRRVGSAVPIHIDVRIIAATNQDLKELVRQGKFREDLYYRLSVLPLTLPPL 282 Query: 445 RERQEDIELLV-----HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 ER+EDI +LV +FL + R + GI P IL ++ WPGN+REL N++EY Sbjct: 283 AERKEDIPVLVSTFLQSFFLDMGVRETRAWMEGILP----ILLQYSWPGNIRELQNVVEY 338 Query: 500 LVNVVPSGEVIDSTLLPPNL 519 L NV S + LPPN Sbjct: 339 LANVCDSNPRPED--LPPNF 356 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/312 (45%), Positives = 201/312 (64%), Gaps = 11/312 (3%) Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M K+ + A + +V++ GESG GKE+ A+AIH S R + PFI +NCAAIPE LLE Sbjct: 162 MEACKQNAKKAARTDLNVLITGESGVGKEIFAQAIHNESHRSDHPFIKVNCAAIPENLLE 221 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY GAFTGAS GK G + A+ GTLF DEIGDMP +QAKLLR I+ E+ +G Sbjct: 222 SELFGYQGGAFTGASKEGKPGKFELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLG 281 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 +VD+RII+ATN+NL + +A FREDLFYR+NV+ + +PPL++R+EDI LL F Sbjct: 282 GQKEQEVDVRIIAATNKNLEELVATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDF 341 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L+ + +G I+ + VE+L+K+ WPGN+R+L N+++ L V VI+ + +P Sbjct: 342 LYETKQEMGE-NKQISQEAVEVLQKYDWPGNIRQLKNIIQRLA-VNAETTVIEKSDIPIK 399 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADE-LGIGI 577 LL ++SE+ ++ +E++EK++IRE L ++ K +A L I Sbjct: 400 LLKQ--------LQISESPSYPEEGLNEIVEQVEKKVIRETLELYDFNKSMAASILNIPR 451 Query: 578 ATLYRKIKKYEL 589 +TLYRK+KKY L Sbjct: 452 STLYRKMKKYGL 463 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/356 (42%), Positives = 216/356 (60%), Gaps = 17/356 (4%) Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 L A H + APD ++G M+++ + I R+A + ++V++ GESGTGKE Sbjct: 117 LEAGHMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKE 176 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VARAI++ S R KPF+ INC A+PE LLESELFGY KGAFTGA A+ + G I+ AN G Sbjct: 177 LVARAIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGA-ASRRIGKIEQANGG 235 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIGDMPL +QAK+LR ++ R + P+G ++ I VD+RI++ATN+NL + I FR Sbjct: 236 TVFLDEIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFR 295 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRL V+ + LPPLR+R D+ LL YF+ L ++ + PG+ + +++R H WP Sbjct: 296 EDLYYRLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWP 355 Query: 488 GNLRELSNLMEYLVNVVPSG-----EVIDSTLLPPNLLNNGTTEQSDVTEV--SEAHLSL 540 GN+REL+N ++ + + G E I + P+ T+ SD+ V A L Sbjct: 356 GNVRELANALKKSL-IFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREML 414 Query: 541 DDAGGTA-----LEEMEKQMIREAL--SRHNSKKQVADELGIGIATLYRKIKKYEL 589 G TA + + +IREAL +R N + Q A LG+ TL KI K L Sbjct: 415 TAGGDTARFDYLTDRLTAIIIREALQMTRGN-RSQAAKLLGLARPTLLSKIDKLNL 469 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/340 (44%), Positives = 213/340 (62%), Gaps = 28/340 (8%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+G+ M ++ I +A S +SV++ GESGTGKE++A AIH S R PF+ INCAA Sbjct: 364 LIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCAA 423 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFG+ KG+FTGA + K G + A+TGT+FLDEIG+M L LQ+KLLR ++ Sbjct: 424 IPENLLESELFGHKKGSFTGAVTD-KKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQE 482 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 REI IG++ +VD+RII+ATN L Q +AE KFR DLFYRLNV+ I PPLR+R EDI Sbjct: 483 REIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDI 542 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL+++FL +T+ GI+ + +L K+RWPGN+REL N++E V V+ E+++ Sbjct: 543 PLLMNHFLEKYTKDNNKSIKGISREASRLLLKYRWPGNVRELENVIERAV-VLAQDEILN 601 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEA-HLS-------------------LDDAGGTALE-- 549 ++L+N + EVS + H+ LD G A+E Sbjct: 602 EEDF-SDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEIV 660 Query: 550 --EMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKK 586 E+E ++I+ A+ + +K +VA LGI TL +KIK+ Sbjct: 661 VSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKE 700 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 264/455 (58%), Gaps = 56/455 (12%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 T++D + G++ VD + R+ N+ A K + + +IGK + E+ + + Sbjct: 200 TIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKV-------ETVIPNTRLYE 252 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQ------SHTSFSVANAPDEPHIEQLVGECR 277 ++ K E IG++ I G ++A ++ + +VA D I+ + E + Sbjct: 253 VIK-TGKPE--IGKIQEISGT---MIATNRVPIVVGNEVVGAVATFQDVAEIQNM--EQK 304 Query: 278 VMRQL--KRLIS----------------------RIAPSPSSVMVVGESGTGKEVVARAI 313 + R+L K LI+ + A S+V+++GE+GTGKE+ A++I Sbjct: 305 IRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSI 364 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H S R+N PF+AINCAA+PE LLESELFGY +GAFTGA GK GL + A+ GT+FLDE Sbjct: 365 HNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTIFLDE 424 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG+MP+ LQ+KLLR I+ ++++ IG I VD+RII ATN+NL + I EGKF+ DLFYR Sbjct: 425 IGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRDLFYR 484 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 ++++ I +P LRER+EDIE+LV YF+ ++ GI +E+L+K +PGN+REL Sbjct: 485 ISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVREL 544 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 +++E + G +ID + L N+ + ++ V+ S++ L + L+E+EK Sbjct: 545 ESIIERACAIC-EGNIID--VRDIKLYNDQDSMENKVS--SQSFLEI-----KPLDEIEK 594 Query: 554 QMIREALSRHNSK-KQVADELGIGIATLYRKIKKY 587 + I++ + + + A +LGI TL+RK+K + Sbjct: 595 EYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNF 629 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 210/334 (62%), Gaps = 20/334 (5%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++G+ MR ++ L++R+ P+ + V++ GESGTGKE+ A A+H S RR++PF+ +NCA Sbjct: 139 EMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHVSSARRDRPFVRVNCA 198 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP L+ESE+FG+ +GAFTGA+ + G + A+TGTLFLDE+GD+ QAKLLRAIE Sbjct: 199 AIPRDLVESEMFGHERGAFTGATER-RIGRFELAHTGTLFLDEVGDLGAEAQAKLLRAIE 257 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 AREI +G PI+VD+RI++ATN++L + +A+G FREDLF+RLNVIPI LPPLR+R D Sbjct: 258 AREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNVIPIHLPPLRDRPGD 317 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 + LV +F H R G + L +RWPGN+REL+N++E L + EV Sbjct: 318 LPALVRHFSARHRTRTGRPLVQWHESALGALSAYRWPGNIRELANVVERLAILHAGSEVT 377 Query: 511 ---------DSTLLP--PNLLNNGT---TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 ++ LP + + +GT TE S AH+ L D AL+ E+++I Sbjct: 378 RTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPASAAHMPLSD----ALDAYERRLI 433 Query: 557 REALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 AL++ + + A L LYR++++ L Sbjct: 434 SAALAQSDGNVAEAARRLQTDRPNLYRRMRRLGL 467 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 265/463 (57%), Gaps = 45/463 (9%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------------ 205 ++ ++ +I+N +G++VV+ + + F+N T L LG+ +++ IGK + Sbjct: 22 LASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKSDAIGKHVWDVTSHSQLPQV 81 Query: 206 --RFRPLTFESNFTHGHMQHIVSW---DDKSELI--IGQ--LHNI-QGRQLFL------- 248 RP+ ++ +G +V +++ +I IG+ +I G+ LF Sbjct: 82 IETGRPILYDFWEVNGRKLIVVRIPIINNEGNVIGAIGKSLFTDIPSGKLLFTKLQVLEK 141 Query: 249 -MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 +AF++ V A + + L+GE ++++K+L ++A S S++++ GESGTGKE Sbjct: 142 ELAFYKEEIR-KVYKA--KYSCKNLIGESESVKEIKKLARKVASSNSTILITGESGTGKE 198 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 ++A+AIH R +PF+ +NCAA+PE LLE+ELFGY GAFTGA GK G + A G Sbjct: 199 LLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTGAKKGGKPGKFELAQGG 258 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIG++PL +Q+KLL ++ RE+ +G + +D+R+ISATN+NL + G FR Sbjct: 259 TIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVISATNRNLEDMVKNGTFR 318 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNVI LP LRER EDI LLV+Y H ++L G +++L K+ WP Sbjct: 319 EDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHVEGYTEQAMQLLTKYHWP 378 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+R+L N +E + + + + I ST P L S+V S A Sbjct: 379 GNVRQLENALERMFSF--TDDKILSTEHMPFLKKIVNVNSSEVNTKSLAE---------T 427 Query: 548 LEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 + E EK+MI +AL + ++ + A L I ++ LYRKIKKY++ Sbjct: 428 IAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 139/325 (42%), Positives = 204/325 (62%), Gaps = 12/325 (3%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 E++VG MR++ ++ ++AP+ ++V++ GE+GTGKE+VARAIH+ S RR++PF+A+N Sbjct: 757 FEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAIHRRSPRRDRPFVAVN 816 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 C AIP+ L+ESE FG+ KGAFTGA A + G + A+ TLFLDE+GD+ L +QAKLLR Sbjct: 817 CTAIPKDLMESEFFGHEKGAFTGAVAR-RVGRFEQADGSTLFLDEVGDLDLAIQAKLLRV 875 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ +EI +GA P++VD+RI++ATN++L + EG+FR+DLFYRLNVIP+ LPPLRER Sbjct: 876 LQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRLNVIPLRLPPLRERP 935 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 +D+ L+ +FL +R G P PD++ R + WPGN+REL NL E V Sbjct: 936 QDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELRNLCERAV------- 988 Query: 509 VIDSTLLPPNL-LNNGTTEQSDVTE--VSEAHLSLDDAGGTALEEMEKQMIREALS-RHN 564 ++ + P G T + D + L L +A +E E++ + L R Sbjct: 989 LMGWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRLVERFEREYLTRLLKERRG 1048 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 +VA GI LY K+K Y L Sbjct: 1049 RIGEVARAAGIAERNLYEKMKAYGL 1073 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 140/316 (44%), Positives = 205/316 (64%), Gaps = 4/316 (1%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G+ ++++ I +++ + ++ +++GESGTGKE+VA+ IH+ S R KPFI +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP +LLESELFG+ KGAFTGA N + G + AN GT+FLDEIGDMPL LQ K+LR I+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQ-NCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQE 120 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + IG + PIQV++RII+ATN++L + EG+FREDLF+RLNV+P+ +PPLRER+EDI Sbjct: 121 KTFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDI 180 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL YF++ + + G I P+V++I + WPGN+REL NL+E L V+ G I+ Sbjct: 181 PLLCEYFINKFSHKFGYSLQ-IKPEVMQIFLNYTWPGNVRELENLIERLY-VLNEGGNIN 238 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVA 570 +P + + Q ++ S L+E EK++I AL+ H K + A Sbjct: 239 IKDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAA 298 Query: 571 DELGIGIATLYRKIKK 586 L I TL K+K+ Sbjct: 299 KYLNINRTTLIEKMKR 314 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 136/331 (41%), Positives = 208/331 (62%), Gaps = 20/331 (6%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++G +R + ++++A +S+++ GESGTGKE++A+A+H S R+ F+A+ Sbjct: 141 QFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKELIAQAVHIHSNRKEGRFMAV 200 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC +PE +LESELFGY KGAFTGA+ N + GL++AA+ GTLFLDE+G++P+ +Q LLR Sbjct: 201 NCGGLPESILESELFGYRKGAFTGAAEN-RQGLLEAADGGTLFLDEVGNLPMNVQKTLLR 259 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E +G ++ +VD+RIISATN +L + + G FREDL+YRLNV+ + LPPLR+R Sbjct: 260 FLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFREDLYYRLNVVNLHLPPLRDR 319 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS- 506 +DI LL +F+HL ++ G+ D ++IL WPGN+R+L N++E + + S Sbjct: 320 IDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWPGNIRQLRNVIEACMAMEASD 379 Query: 507 -------GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 G+VID LP + T + V LS D ALE E+ ++R+ Sbjct: 380 YISLDTLGQVID---LPEGRIVPATVQAGPV-------LSDDLPFTEALERFERDLLRDL 429 Query: 560 LSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 L +H A E G+ +ATLYRKIK+Y L Sbjct: 430 LKKHGGAVDSAAREAGMNVATLYRKIKRYGL 460 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 145/319 (45%), Positives = 204/319 (63%), Gaps = 10/319 (3%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++ + + M+ + LI+++A ++V+V GESGTGKE+VAR++H S R I +NC Sbjct: 151 KIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCG 210 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 IPE LLESELFG+VKGAFTGA N KTGL + A+ GTLFLDEIG++P LQ KLLR ++ Sbjct: 211 GIPENLLESELFGHVKGAFTGADKN-KTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQ 269 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 REI P+GAS+ +DIRI++AT +NL +AEG FREDLFYRLNV+ I LPPLR+RQED Sbjct: 270 DREIRPVGASATRTIDIRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQED 329 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I LL+ F+ ++L G+AP + L H WPGN+REL NL+E V V+ G+ I Sbjct: 330 IPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWPGNVRELENLIERAV-VLAEGDTI 388 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM-EKQMIREALSRH-NSKKQ 568 LPP + D A D A +++ EK++I +AL++ ++ + Sbjct: 389 TPDDLPPGFGTDSAGGPGD------ALAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTR 442 Query: 569 VADELGIGIATLYRKIKKY 587 + L I +L K+K+Y Sbjct: 443 TSKLLEISHPSLLAKMKEY 461 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/336 (45%), Positives = 208/336 (61%), Gaps = 16/336 (4%) Query: 252 HQSHTSFSVANAP---DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 HQ+ S + P + + ++GE M L +I ++A S S+V++ GESGTGKE+ Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VARAIH LS R K F+ +NCAAIP+ LLESELFG+VKG+FTGA A + G + A+ GT Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVAT-RIGRFEMADRGT 239 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDM LQ KLLR ++ +E+ P+GA+ +VD+RII+ATNQNL +A FRE Sbjct: 240 LFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRE 299 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRL+VIPITLPPLRER+ DI LL++ FL R + ++IL WPG Sbjct: 300 DLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPG 359 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---G 545 N+REL NL+E LV + SG I LP + +S+ L+L D G Sbjct: 360 NVRELENLVERLVILKGSG-TITFQDLPEKYRGIKSAPKSE-------RLTLPDTGFCLN 411 Query: 546 TALEEMEKQMIREALSRH-NSKKQVADELGIGIATL 580 +A+E+ E Q+I +AL + +KK+ A L + TL Sbjct: 412 SAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 157/395 (39%), Positives = 226/395 (57%), Gaps = 41/395 (10%) Query: 200 IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELII----GQLHNIQGRQLFLMAFHQSH 255 +I + +R R + E N H W KS L I G+ HN + Sbjct: 190 MISQAVRLRQVAHEENLYH--------W--KSNLQISAPEGKSHNSD--------VFDNP 231 Query: 256 TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 S V P ++G + MR + ++I +IAP+ ++V+++GESG GKE+VA AIH Sbjct: 232 NSIEVGEQP-----ANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHY 286 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 S R PFI NCAA+PE ++ESELFG+ +GAFTGASA K G + ANTGT+FLDE+G Sbjct: 287 KSQRAASPFIKFNCAALPESIVESELFGHERGAFTGASATRK-GRFELANTGTIFLDEVG 345 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 ++ L +QAKLLR ++ +E +G + I+ D+RII+ATN+NL + I EGKFREDLFYRLN Sbjct: 346 ELSLSIQAKLLRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLN 405 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 + P+T+PPLRER+ DI LL YF+ + + G I+ +++L ++ WPGN+REL N Sbjct: 406 IFPVTVPPLRERKSDILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELEN 465 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 +E V + G VI LPP L T E S LD +E ++ Sbjct: 466 CVERAVILSDDG-VIHGYHLPPTL---QTAESSGTPCAGPLQQRLD--------ALEYEL 513 Query: 556 IREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 I EAL + + A ELG+ + ++KK+++ Sbjct: 514 IVEALKNTKGNMSKAAMELGLTDRVMGLRVKKFDI 548 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/326 (44%), Positives = 212/326 (65%), Gaps = 12/326 (3%) Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 E E ++G+ + M+ L + I ++ S SS+++ GESGTGKE+VA+AIH+ S R N+PFI Sbjct: 126 EEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQPFI 185 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 INC+AIP +L E+ELFG+ KG+FTGAS N + G I+ A GTLFLDEIG+MPL +QAKL Sbjct: 186 PINCSAIPNELFENELFGHEKGSFTGAS-NREIGKIELAGEGTLFLDEIGEMPLFMQAKL 244 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ RE +G I++ R+ISATN+NL + + +FREDLFYR+NVI + +PPLR Sbjct: 245 LRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLR 304 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+EDI LLV F+ ++ I D +EIL + WPGN+R+L N++E V V+ Sbjct: 305 ERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAV-VLC 363 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN- 564 GE+I + LP + +S+ ++SE S +++ L ++EK +I + L N Sbjct: 364 QGEIITANHLPDRI-------KSNSQKISENIRSENNS--LNLYDIEKNIILKVLQEENF 414 Query: 565 SKKQVADELGIGIATLYRKIKKYELL 590 ++ + A +LGI L K+K + LL Sbjct: 415 NQTRAAQKLGISRKQLRTKMKNFGLL 440 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 159/451 (35%), Positives = 250/451 (55%), Gaps = 41/451 (9%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------------RFR--- 208 +I ++ +G+ V++E V N + G+ ++I+G+PI R R Sbjct: 150 IIGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLEDTICERVLRRRIGI 209 Query: 209 ---PLTFESNFTHG--HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANA 263 T++ +G H I + ++ +L + R L +F T+ + Sbjct: 210 SDVYSTYKKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNL---SFELEKTNEKLKYL 266 Query: 264 PDEPH------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 DE E ++G+ + + K + +IA + SS+ + GESGTGKEV +RAIH+ S Sbjct: 267 QDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEVFSRAIHEQS 326 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 GR+ F+ +NC+AIP +L ESE FGY GAFTGA+ GK+G+ + A GT+FLDEI D+ Sbjct: 327 GRKG-SFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGTVFLDEIADL 385 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL +QAKLLR ++ +E+ +G I+++ RIISATN++L + + E KFREDL+YRLNV+ Sbjct: 386 PLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFREDLYYRLNVV 445 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 I +PPLRER+EDI +L+HYFL R G ++ + +IL +RW GN+REL N + Sbjct: 446 EIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKGNIRELKNTV 505 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E +V V+ +I+ +P ++ + D + L L +A+E++E + I Sbjct: 506 ENMV-VLSDSSIIEKDAIPSYIVESAKNSTDD----EDYPLDLT----SAIEKLEIKNIT 556 Query: 558 EALS-RHNSKKQVADELGIGIATLYRKIKKY 587 +AL +K + A L I TLY K+ Y Sbjct: 557 KALEMSKGNKAKAAKILNIPRTTLYYKLDLY 587 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 168/453 (37%), Positives = 249/453 (54%), Gaps = 51/453 (11%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFES----NFT 217 T++D++ GV VD + R+ N+ A + GV ++ IG+P FR ES FT Sbjct: 82 TILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVLKFT 141 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQL------FLMAFHQSHTSFSVANAPDEPHIEQ 271 + IV +KS I+ GR++ L+ HT V D +E Sbjct: 142 METRKPIV---NKSVAIL----RADGREIPISVSTALLKNASGHTIGGVETFRDLSLVET 194 Query: 272 L-------------VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSG 318 L V + M +L ++ +A S S+V++ GESGTGKE+++RA+H LS Sbjct: 195 LRKEIDRQYRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLSS 254 Query: 319 RRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 R PF+AINC A+P+ LLESELFG+V GAFT A N + G A GTLFLDEIGD+ Sbjct: 255 RAAGPFVAINCGALPDTLLESELFGHVAGAFTDARKN-RAGRFAQAEGGTLFLDEIGDVS 313 Query: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 LQ +LLR +E R P+G+S + ++RI++A+N++LAQ +AEG FR+DL+YR+NV+ Sbjct: 314 PALQVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVK 373 Query: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 + LP L R+EDI LL +F+ + G++ + + + +H WPGN+REL N++E Sbjct: 374 LELPTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIE 433 Query: 499 YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS-LDDAGGTALEEMEKQMIR 557 Y ++ G +I LP E AH L D+GG +L + E + IR Sbjct: 434 YAF-ILCRGGLIQPAFLP---------------EYLHAHACVLPDSGGLSLRDNEARAIR 477 Query: 558 EALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 +AL R+ ++ A ELGI TL RK+K+ + Sbjct: 478 DALDRNQWRRMATARELGIDKNTLRRKMKRLNI 510 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 151/325 (46%), Positives = 202/325 (62%), Gaps = 14/325 (4%) Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P L+G M+++ + I RIA S +V++ GESGTGKE+VA AIH S R+ KPF+ Sbjct: 134 PRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVK 193 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 I+C AIPE LLESELFG+ KGAFTGA K G + A+ GT+FLDEIGD+ LQAKLL Sbjct: 194 IDCTAIPENLLESELFGHEKGAFTGAHTR-KLGKFELADGGTVFLDEIGDISPALQAKLL 252 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ + +G + +VD+RII+ATN++L + + G FREDL+YRLNV+ I LPPLRE Sbjct: 253 RFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRE 312 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+EDI LLV YF+ L R+ G G+ V +IL ++ WPGN+REL N+ E V ++ Sbjct: 313 RKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAV-LMAR 371 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR---- 562 G VI LP LL V +EA +D G L+EM +M R A+ R Sbjct: 372 GNVITPESLPEYLLRA-------VRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 563 -HNSKKQVADELGIGIATLYRKIKK 586 +K VA LG+ TLY K+K+ Sbjct: 425 YRGNKTAVARALGMSRTTLYAKMKE 449 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 146/328 (44%), Positives = 205/328 (62%), Gaps = 9/328 (2%) Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P ++G+ +++ + IA PS+V++ GESGTGKEVVARAIH LS R+ + FIA Sbjct: 137 PGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAIHDLSDRKEQAFIA 196 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCA+IP LLESELFG+ KGAFTGAS K GL + A+ GT+FLDEIG+M + +Q KLL Sbjct: 197 INCASIPAPLLESELFGHEKGAFTGASGR-KKGLFEEAHHGTIFLDEIGEMDMAMQVKLL 255 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ R I +GA I++D R+I+ATN+NLA+ I E FREDLFYRLNV PI +PPLRE Sbjct: 256 RVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRE 315 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R DI L YFL +R G + ++P+ +++ ++ WPGN+REL N++E + ++ S Sbjct: 316 RPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRELRNVIERIC-IMRS 374 Query: 507 GEVIDSTLLPPNLLNN--GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 G TLLP +L T + ++ D A+ +EK +I++AL + Sbjct: 375 G----PTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLIQQALQKTG 430 Query: 565 SKK-QVADELGIGIATLYRKIKKYELLN 591 Q A L I TL K++KY L+ Sbjct: 431 WNVLQTAANLKIPRGTLRYKMEKYGLIQ 458 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 211/323 (65%), Gaps = 11/323 (3%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 + ++G + + + RIA ++++ GESGTGKE+ A+A+H+ S R PF+AIN Sbjct: 241 FQDIIGSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVAIN 300 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAAIP+ LLESELFGY GAFTGA GK G + A+ GT+FLDEIGDM L LQAKLLR Sbjct: 301 CAAIPDNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRV 360 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ R++ +G + + VD+RII+AT++NL + + + FREDL+YRLNVIPIT+PP+RER+ Sbjct: 361 LQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERK 420 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 ED+ +L+ YF+ + + + D +++ ++ WPGN+RE+ N++E+++ + +G+ Sbjct: 421 EDLPILIEYFMKRLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEHVI-YLETGD 479 Query: 509 VIDSTLLPPNL-LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-K 566 +I + LP L + G + S+ +++ G + ++ ++ + RH K Sbjct: 480 LITADSLPAYLKIKEGKS-------TSQLQINVAPHGEESFKQQVLHLL-DVYGRHTEGK 531 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 K++A E+GI + TLYR++KK ++ Sbjct: 532 KRIAKEMGISLPTLYRRLKKLKI 554 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 216/336 (64%), Gaps = 20/336 (5%) Query: 267 PHI--EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 PH ++G R M L +I ++A S ++V++ GESGTGKE+ ARAIH+LS R +K F Sbjct: 135 PHFLCSTIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNF 194 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAAIP+ LLESELFG+VKG+FTGA AN + G + A+ GTLFLDEIGDM LQ K Sbjct: 195 VPVNCAAIPDDLLESELFGHVKGSFTGAYAN-RIGRFEMADKGTLFLDEIGDMKATLQVK 253 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++A+E P+G++ +VD+RII+A+N+NL + +A FREDL+YRL+VIPIT+PPL Sbjct: 254 LLRVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPL 313 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 R+R+EDI LL+++F R + G + +E+L + WPGN+REL NL+E ++ + Sbjct: 314 RDRREDIPLLINHFQGQFNRDRRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMK 373 Query: 505 PSGEV-IDS---------TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 SG + +D T++ P L +G+ E+ + L+ +A++ E Sbjct: 374 ESGFITVDDLPEKYLAPRTVVAPPLSVSGSVPVG--KELPPEGICLN----SAVDAFENG 427 Query: 555 MIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 +I +AL R +KK+ A L + TL K+KK L Sbjct: 428 LIMQALHRTGGNKKEAAALLNLKRTTLIEKLKKKNL 463 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 144/320 (45%), Positives = 207/320 (64%), Gaps = 7/320 (2%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+G+C +++L +S +A S S+V++ GESG GKEV+A+A+HK R KP ++INC A Sbjct: 145 LIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRSGKPLVSINCGA 204 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE+LLESELFG+VKGAFTGA + G + AN GT+FLDEIGDM LQ KLLR ++ Sbjct: 205 IPEELLESELFGHVKGAFTGA-VRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLRVLQE 263 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R P+G+ I VD+R+I+AT+++L IA G+FREDL+YRLNVIP+TLPPLRER +DI Sbjct: 264 RCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRERGDDI 323 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL +F+ ++ + G++ +V I+ ++WPGN+REL NL+E + + G +++ Sbjct: 324 LLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVRELQNLIERVTTLKRHG-IME 382 Query: 512 STLLPPNLLNNGT-TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQV 569 LP ++++ QS +V A D T ++E E +I AL R +K Q Sbjct: 383 LEDLPSRMISDKERVLQSFRMDVENAECI--DLKST-VDEFESHLILSALQRFQWNKNQA 439 Query: 570 ADELGIGIATLYRKIKKYEL 589 A+ L + TL KIKK L Sbjct: 440 ANFLAMNRTTLVEKIKKKGL 459 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 142/297 (47%), Positives = 188/297 (63%), Gaps = 16/297 (5%) Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE+ A AIH S R + F+ +NCAAIPE LLESE FGY +GAFTGA Sbjct: 399 STVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLLESEFFGYDEGAFTGAK 458 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 GK G AN GTLFLDEIGDM + LQAKLLR ++ RE +G +S I+VD+RII+AT Sbjct: 459 QRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAAT 518 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N++L + + EG+FREDL+YRLNVI + +PPLRER D+E L + LG+ GI Sbjct: 519 NRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITGI 578 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 +P E L ++ WPGN+REL N++E + G I LP L++ T + Sbjct: 579 SPKAKESLLQYNWPGNVRELKNILERAMTFAEHGN-IQVEDLPDYLIDQLTIPKK----- 632 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 + G A E+ E + IR+AL++ N +K Q A LGI + LY K+KKYEL Sbjct: 633 --------EKNGLA-EDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKKYEL 680 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 197/322 (61%), Gaps = 21/322 (6%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 QLV M++L L+ R+ S++++ GESG GKE++A IH S R++ P I +NC Sbjct: 382 QLVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKELIAEIIHSSSNRKDGPLIKVNCG 441 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGY GAFTGAS +GK GL + A G LFLDEIG++PL LQ KLLR ++ Sbjct: 442 AIPENLLESELFGYEAGAFTGASKSGKIGLFELAQGGILFLDEIGELPLNLQVKLLRFLQ 501 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +EIL +G PI VD+RI++ TN+NL + IA +FR DL+YRLNVIPI +PPLRER ED Sbjct: 502 DKEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFRLDLYYRLNVIPIFVPPLRERPED 561 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 + +L +YFL++ + + + V+++L ++ WPGN+REL NLME + VV S Sbjct: 562 VPVLANYFLNVFNNKY-QMNKRLHKSVIDVLMEYHWPGNVRELENLMERM--VVTS---- 614 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-----TALEEMEKQMIREALSRHNS 565 +NN + Q L LD A+E E++++ A +R S Sbjct: 615 ---------INNIISMQDLPASFKVPRLKLDSEQDLLPLRQAVENTERELLEAAFARFRS 665 Query: 566 KKQVADELGIGIATLYRKIKKY 587 QVA L + +T+ RK KY Sbjct: 666 SYQVATALQVNQSTVIRKAAKY 687 >UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Cystobacterineae RepID=Q1D9F3_MYXXD Length = 546 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 216/319 (67%), Gaps = 11/319 (3%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G +RQL LI R+APS ++V ++GESGTGKE+VARAIH S R N+P + +NCAA Sbjct: 231 IIGGDPSVRQLSELIERVAPSSAAVTILGESGTGKELVARAIHACSQRANRPLVPVNCAA 290 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 I ++L+ESELFG+ KG+FTGA + G + A+ GTLFLDEIG++PL LQAKLLRA+E Sbjct: 291 ISKELIESELFGHEKGSFTGA-MGARKGAFEEADGGTLFLDEIGELPLDLQAKLLRALEG 349 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 EI +GAS P VD+R+++ATN++L EG+FREDL+YRL VIP+ LPPLR R+ D+ Sbjct: 350 GEIKRVGASRPQTVDVRVVAATNRDLLAAAREGRFREDLYYRLCVIPLHLPPLRSRKADL 409 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 L +F+ + R SV P +E L+ H WPGN+REL N++ + ++ G +ID Sbjct: 410 GSLAEHFVRTYAPRGQSVR--FTPAALERLQHHAWPGNIRELRNVVHRAL-LLRKGPLID 466 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVA 570 + + + N T + V E+ ++L+ LE++E+Q++ AL R+ N++++VA Sbjct: 467 AGDISFDQELNRETGIA-VPELPPG-MTLEQ----MLEKLERQIVEAALRRYNNNRERVA 520 Query: 571 DELGIGIATLYRKIKKYEL 589 ELG+ +TL++++K + L Sbjct: 521 RELGVARSTLFKRLKDWGL 539 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 15/321 (4%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++L+G + M LK LI+RIAP ++V++ GE+GTGKE+ AR IH+LS RR++ F+ INC Sbjct: 141 DELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIHRLSQRRDQRFLPINC 200 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 A+PE LLESELFG+ +GAFTGA + K GL+++A+ GTLFLDEI Q KLLR + Sbjct: 201 GALPETLLESELFGHARGAFTGADKD-KKGLLESADHGTLFLDEINTTSPAFQVKLLRVL 259 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + + +G P VD+R+I+A+N L + + G+FR DLFYRLNV+ ITLPPLRER Sbjct: 260 QEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLNVVTITLPPLRERNG 319 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LL HYFL + R+ G I+P+ ++ LR + WPGN+REL N++E V + E Sbjct: 320 DIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELENIIERAVIMADGNE- 378 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ-MIREALSRHNSKKQ 568 L P L + + ++ S+ L + E+E++ +IR + + + Sbjct: 379 -----LQPQYLPRFSVSDTPLSSSSDQEL-------LPMAEVERRHIIRVLKATAGHRGK 426 Query: 569 VADELGIGIATLYRKIKKYEL 589 + LGI +A+L+RK+K+Y L Sbjct: 427 ASKLLGISLASLWRKVKQYGL 447 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 162/458 (35%), Positives = 258/458 (56%), Gaps = 42/458 (9%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR-PLT------ 211 +++F ++++ G++ +DD R+ N A K G+ +G IR + P T Sbjct: 193 AELFRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTNLPRIL 252 Query: 212 FESNFTHGHMQH-----IVSWDDKSEL---IIGQLHNIQG----RQLFLMAFHQSHTSFS 259 + G +Q+ IV+ ++ ++G + N + ++L + + H Sbjct: 253 RQGGSEDGELQYVGEKVIVTQRFAIKVNGRVVGAVANFRDVTELQRLERLVRQKLHAKGL 312 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 VA + ++GE ++ L + A ++V++VGE+GTGKE++A+ IH S R Sbjct: 313 VARI----RLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKEMLAQGIHNASHR 368 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 N PF+A+NCAA+PE LLESELFGY +GAFTGA GK GL + A+ GT+FLDEI +MPL Sbjct: 369 ANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGGTIFLDEISEMPL 428 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ++LLR ++ RE+L IG I VD+RII+A+N+NL + +G FR+DL+YRL+++ + Sbjct: 429 PLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDLYYRLHLLTL 488 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 T PPLRER+EDI LLV FL H+ L + I V++L ++ WPGN+REL N ++ Sbjct: 489 TAPPLRERKEDIPLLVRAFLRKHS-HLNPLVSDIDSLAVQLLAEYEWPGNVRELENAIQR 547 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG----GTALEEMEKQM 555 L+ ++ ++I G S + E + +L G +L ++E Q Sbjct: 548 LI-ILSEEQII------------GKAAVSALLEELQGGQTLPFRGKQQAAPSLADLEAQY 594 Query: 556 IREALS-RHNSKKQVADELGIGIATLYRKIKKYELLNT 592 I L+ +N+K + A LGI +TL+RK++ E N Sbjct: 595 IAAVLAEENNNKSRAAKRLGIDRSTLWRKLRGVEKSNN 632 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 138/317 (43%), Positives = 210/317 (66%), Gaps = 7/317 (2%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +VG M +L R+I++ A S V+++GESGTGKEVVARA+H ++KPFI ++C + Sbjct: 153 MVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARAVHYTGCYKDKPFIPVDCGS 212 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 + L+ESELFGYVKGAFTGA + K GL+ A+ GT+FLDEIG++P+ LQ+KLLRA++ Sbjct: 213 LVPTLIESELFGYVKGAFTGAQ-HSKQGLLAMADGGTVFLDEIGELPIDLQSKLLRALQE 271 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +EI P+G + + +++RI++ATN++L Q + +G FR DL++RLNV+ + +PPLR+R++DI Sbjct: 272 KEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRIPPLRDRKQDI 331 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LLV +FL T R I+ + ++++ + WPGN+REL + ++ + SG I+ Sbjct: 332 PLLVGHFLE-RTERATGFQRNISDEALKLMLTYDWPGNVRELEHCLDRACALT-SGPTIN 389 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVA 570 + LP + N Q+ + + A + G + EMEKQ I EA+ R H K + A Sbjct: 390 TLDLPTTIQNWHVQTQTVLAPQAPAAPT---NGIVPIAEMEKQAILEAIERLHGDKLEAA 446 Query: 571 DELGIGIATLYRKIKKY 587 LGIG TLYRK+K+Y Sbjct: 447 RLLGIGKTTLYRKLKEY 463 >UniRef50_C0Z891 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z891_BREBN Length = 426 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 207/333 (62%), Gaps = 26/333 (7%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + QL+G +R + ++ S S+V++ GESGTGKE++A+AIH SGR +PF+A+ Sbjct: 111 YFAQLIGAETGLRDVIAKAKKVTNSISTVLIRGESGTGKELLAKAIHCESGRSRQPFVAV 170 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLESELFGY GAFTG+ GK G + A+ GT+FLDE+GD+PL LQ KLLR Sbjct: 171 NCAAIPETLLESELFGYEGGAFTGSRREGKPGKFELAHKGTIFLDEVGDIPLSLQPKLLR 230 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ + + +G + VD+R+I+AT+++L + EG FREDL+YRLNVIP+ L PLRER Sbjct: 231 VLQEKTVDRVGGVKTLGVDVRVIAATHRDLESMVREGTFREDLYYRLNVIPLRLKPLRER 290 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 EDI L + +FL+ + L + +V+ L+ + WPGN+R+L N +EY+VN+ G Sbjct: 291 TEDIALYLQHFLYRYGTLLQKGRLELEAQLVQRLQAYEWPGNIRQLENAVEYMVNMA-EG 349 Query: 508 EVIDSTLLPPNLL--NNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-- 563 VI + LP LL + TT SD+ LE++ + R L R+ Sbjct: 350 HVIGNEELPEYLLFEDEPTTVGSDL----------------GLEKLVAEYERSILQRYLN 393 Query: 564 -----NSKKQVADELGIGIATLYRKIKKYELLN 591 K +A+EL I ++TLYRK++KY L+ Sbjct: 394 AGKYGQDKAAIANELRISLSTLYRKMEKYGLIK 426 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 84 CEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTI 143 C C + CRE A +G PV +++ VGVI +I + EQ+E + + ++ +++H S++ Sbjct: 21 CGNCKFLQQCRELATIGFPVHKREKTVGVIGIIGFSPEQKEKMLHHSEKWMPFLQHTSSL 80 Query: 144 FVSKLLE 150 KLLE Sbjct: 81 IAHKLLE 87 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 135/319 (42%), Positives = 209/319 (65%), Gaps = 7/319 (2%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E ++G M+++ LI+++A + S++++ GESGTGKE+VARA+H S R+++PF+AI Sbjct: 138 RFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAI 197 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC+A+PE LLESELFG+ KG+FTGA + K GL + A GT+FLDE+ M LQ KLLR Sbjct: 198 NCSALPENLLESELFGHKKGSFTGAVQD-KIGLFEEAEGGTIFLDEVNSMAQPLQTKLLR 256 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ R+I +G + + +++R+++ATN+ L I G FREDL+YRL VIP+ +P LRER Sbjct: 257 VLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRER 316 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LLV +FL + + G+ I P +E+L K+RWPGN+REL N +E + Sbjct: 317 PDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDA 376 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 +I +T LPP ++ + T + + +LD+ + E E++ I E + + NS+ Sbjct: 377 -LIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDE----YIREQERRYIEETIKFNGNSR 431 Query: 567 KQVADELGIGIATLYRKIK 585 ++ A LGI +ATLYRK++ Sbjct: 432 EKAAKMLGISMATLYRKLE 450 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 149/335 (44%), Positives = 213/335 (63%), Gaps = 9/335 (2%) Query: 256 TSFSVANAPDEPHIE-QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 +S +++N + IE ++VG M+++ LI R+ ++V+V GE+GTGKE+VARAIH Sbjct: 131 SSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAIH 190 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S R++ F+AINC AIPE L+ESELFG+ KGAFTGA K G Q AN GTLFLDEI Sbjct: 191 FNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGA-VERKIGKFQLANNGTLFLDEI 249 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 G++ +Q KLLR ++ R+ P+G++ ++ RII+ATN+NL + + EG+FREDLFYRL Sbjct: 250 GELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRL 309 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV+PI LPPLRER +DIE L F+ +++ G I P+ +++L+ +RWPGN+REL Sbjct: 310 NVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNIRELE 369 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD-DAGGTALEEMEK 553 N++E V S ++ +L P+ + + +D T LD DA EEMEK Sbjct: 370 NIIERSFIVENSHQITVDSL--PDSIKLTPKDGADKTASVGYSGPLDFDAFK---EEMEK 424 Query: 554 QMIREALSRHNSK-KQVADELGIGIATLYRKIKKY 587 + I AL +N + Q + I TL RKI+KY Sbjct: 425 EFIVSALKANNGRINQTVAQANIPKNTLLRKIRKY 459 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 260 bits (665), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 141/326 (43%), Positives = 201/326 (61%), Gaps = 16/326 (4%) Query: 268 HIEQ--LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 HI+ ++ R + + L +++A S+V++ GESGTGKE+ A+ IH+ N+PFI Sbjct: 162 HIKDPDIIFRSRAIAAVVELATKVADVDSTVLITGESGTGKELFAKLIHRHGRGDNRPFI 221 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 INC AIPE LLESELFGY GAFTGA GK GL + A+ GTLFLDEIG+MP +LQ KL Sbjct: 222 KINCGAIPETLLESELFGYDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKL 281 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR I+ + ++ +G V++RII+ATN++LA + +G FREDL+YRL V+P+ +PPLR Sbjct: 282 LRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLR 341 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+EDI LLV +FL ++ G I PDV++ L ++ WPGN+R+L N++E LV P Sbjct: 342 ERKEDIPLLVKHFLDKFNKKFG-FNKVILPDVIDRLTEYSWPGNVRQLENIIERLVVTTP 400 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 E+ L P +N T++ E A+ EK ++ E ++ + Sbjct: 401 GNEITADML--PQQVNARIPLPKTGTKLKE-----------AVAATEKYLLTETFRQYGN 447 Query: 566 KKQVADELGIGIATLYRKIKKYELLN 591 +VAD LGI T RK KY L++ Sbjct: 448 WNKVADVLGIDRTTACRKAVKYGLIS 473 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 173/528 (32%), Positives = 279/528 (52%), Gaps = 68/528 (12%) Query: 91 ENCREKAFLGT----PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 + CR+ L PV+ ++ +GV+ +QEHI D L Y+ Sbjct: 103 DECRDIMILKNIGILPVLRDNKIIGVL--------KQEHIRDYL-----YMH-------- 141 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI- 205 LED G +I + +G+ +++E V N+ + + +I+G+P+ Sbjct: 142 --LEDYGL------TLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSEDIVGRPMN 193 Query: 206 RFRPLTFESNFTHGHM-QHIVSWDDKSELIIGQLH----------------NIQGRQLFL 248 F T + + + + DK E + +H + + + Sbjct: 194 EFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVCTEVDVTEAKI 253 Query: 249 MAFHQSHTSFSVANAPDEPH------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 +A + ++ +E ++++G+ + + K + ++A + SS+ + GES Sbjct: 254 LALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNSSIFIWGES 313 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKEV ARAIH S R+ + FI +NC+AIP +L ESE FGY GAFTGAS G+ G+ + Sbjct: 314 GTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGASKKGRIGIFE 372 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A GT+FLDEI D+PL +QAKLLR ++ +EI +G + I+++ RIISATN++L++ + Sbjct: 373 LAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATNKDLSKMVK 432 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 KFREDL+YRLNV+ I +PPLRER+EDI LLVH FL ++ I+ DV++I + Sbjct: 433 AEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTISKDVIDIFQ 492 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 +RW GN+REL N +E +V V+ ID +P ++++ ++ TE E L L Sbjct: 493 NYRWKGNIRELKNTIENIV-VLSQNSKIDVDDVPSYMMDS----TNNSTEEEEYPLDL-- 545 Query: 543 AGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 A +++E + I +AL N +K + A L I TLY KI +Y++ Sbjct: 546 --TKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKI 591 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 257/465 (55%), Gaps = 63/465 (13%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--------------FR 208 +IDN +G +VV+ + V F++ L T+ + + + IGK I + Sbjct: 19 GVLIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGK 78 Query: 209 PLTFESNFTHGHMQHIVSW---DDKSELI-----------------IGQLHNIQGRQLF- 247 P++++ T G +V + ++ +LI +L ++ F Sbjct: 79 PISYDYWETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFY 138 Query: 248 ---LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 L F+ + +F+ ++GE ++++K++ +IA S S+V++ GESGT Sbjct: 139 RQELYKFYNAKYTFN-----------DMIGESDAIKKVKKIAQKIALSESTVLITGESGT 187 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A+AIH S R PF+ INCAA+PE LLE+ELFGY +GAFTGA GK G + A Sbjct: 188 GKELFAQAIHNASYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELA 247 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 GT+FLDEIG++PL +Q+KLL ++ REI +G + VD R+I+ATN+NL + EG Sbjct: 248 QGGTIFLDEIGELPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEG 307 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FR+DL+YRLNVI + +P LRERQ+DI LLV+YF +L + + +L KH Sbjct: 308 TFRDDLYYRLNVISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKH 367 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL-LNNGTTEQSDVTEVSEAHLSLDDA 543 WPGN+REL N +E V ++ +I LP ++ + G QS L+LD+ Sbjct: 368 YWPGNIRELQNTLER-VFILSDDNIISVNHLPFSIKMRKGNIIQS-------KRLTLDE- 418 Query: 544 GGTALEEMEKQMIREALSRHNSKKQVADE-LGIGIATLYRKIKKY 587 +++ EK++I + LS + A E LGI +++LYRK+KK+ Sbjct: 419 ---MIDQTEKRIILDTLSNVKDDRIAAAELLGIHLSSLYRKMKKH 460 >UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0D3_9PLAN Length = 462 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 136/325 (41%), Positives = 208/325 (64%), Gaps = 14/325 (4%) Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 P + E +VG+ M+++ R+A + S+V++ GESGTGKE++A AIH+ S R +P Sbjct: 136 PSQRGFENIVGQSGAMQEIFEDARRVAQTDSTVLITGESGTGKELIAEAIHRNSPRAAEP 195 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+ +N AA+PE L+ESELFG+ KG+FTGA+ + + G +AA+ GTLF+DEIGD L QA Sbjct: 196 FVTVNMAAVPEHLVESELFGHTKGSFTGATES-RRGRFEAAHHGTLFIDEIGDFKLESQA 254 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR +E I PIG++ V++R+++AT+ +L + + +G+FREDL+YRLNVI + LPP Sbjct: 255 KLLRVLENHTITPIGSNQDRHVNVRVVAATSHHLEKLVEKGRFREDLYYRLNVINLKLPP 314 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER EDI LLV F++ +++ P ++ ++ + L H WPGN+R+L N +E +V + Sbjct: 315 LRERNEDIALLVDSFMNQICQQIQRERPELSAELHQYLVNHTWPGNVRQLRNCLESMVVL 374 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR- 562 SG + L P++L NG H + G LEE+E+ I++ LSR Sbjct: 375 SKSGRLTLDDL--PDMLRNGEG----------VHDGIVIPEGIRLEELERTAIQQTLSRN 422 Query: 563 HNSKKQVADELGIGIATLYRKIKKY 587 H ++ A LG+ + TL RK+K + Sbjct: 423 HGNRTHSAKSLGMSVRTLQRKLKAW 447 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 244/450 (54%), Gaps = 30/450 (6%) Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-----------PIRFRPLTFES 214 D +G+ +VD+ +Q N T + +GV + IG+ P+ + E Sbjct: 172 FDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAENVIENTRLPVVLKTGVPER 231 Query: 215 NFTHG-HMQHIVS-----WDDKSELIIGQL-----HNIQGRQLFLMAFHQSHTSFS-VAN 262 N H Q++V W K +IG + I L F Q + + + Sbjct: 232 NQVHRLQGQNLVVHRMPIW--KQGRVIGAVGMLIHEGISDIYKILERFDQKDGAVKPLFS 289 Query: 263 APDEP--HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 P + H E ++GE + + + K++ + A S +SV++ GESG GKE ARAIH Sbjct: 290 KPKKKQIHFEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARAIHGAGVTN 349 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 N PFI++NCAAIP+ LLESELFGY +GAFTGA NGK G + AN GTLFLDEIGDM L+ Sbjct: 350 NGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHGTLFLDEIGDMSLL 409 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 Q K+LR ++ REI IG + PI VD R+I+ATN++L Q + EG FREDL++RL+VIPI Sbjct: 410 TQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFREDLYHRLHVIPIQ 469 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLR R++DI L+V L + + + +V+ ++ + WPGN+REL N++E L Sbjct: 470 IPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFHYNWPGNVRELINVLERL 529 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 + + L P EQ + + ++ + +A +E E+ +I L Sbjct: 530 FALSDDVHIRAKDL--PEEFYYRDMEQKKLVPMIQSLPAKQEAMKVVRDEEERGLIERVL 587 Query: 561 SR-HNSKKQVADELGIGIATLYRKIKKYEL 589 +K + A LGI ATLY K+ ++++ Sbjct: 588 KEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 254/484 (52%), Gaps = 63/484 (13%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRP 209 N S + T++D M + V +VD N VQ N+ A + + ++G + R Sbjct: 69 NQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIRL 128 Query: 210 LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQ------------SHTS 257 L T + + D LI +G + ++ Q +HT+ Sbjct: 129 LDALRQGTSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHTT 188 Query: 258 FSVAN---------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + N A D+P + G ++ ++A + ++V++ GESG GKE+ Sbjct: 189 AHLHNLQQEMSRFQAADDP-FYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKEL 247 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A+AIH+ S R KPFIAINC AIP L ESELFGY GAFTGA GK G ++ A+ GT Sbjct: 248 FAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGT 307 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIG++PL LQ KLLRA++ R+ +G + PI V+ RI++ATN+ L Q +A+G+FRE Sbjct: 308 LFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFRE 367 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV + +PPLRER+ED+ LV F+H ++ P I+P+V++ L ++ WPG Sbjct: 368 DLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPG 427 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA-GGTA 547 N+R+L N++E L + +G ++ L P+++ + T H+SL GGT Sbjct: 428 NIRQLRNVIERLSILQENGVILPEHL--PSVIRSHT---------EPTHVSLHTPMGGTY 476 Query: 548 LEEM---------------------EKQMIREALSR-HNSKKQVADELGIGIATLYRKIK 585 EK+ I AL R + +KK A+ LG+ TLY K+K Sbjct: 477 APPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMK 536 Query: 586 KYEL 589 K+ + Sbjct: 537 KFNI 540 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/327 (45%), Positives = 209/327 (63%), Gaps = 17/327 (5%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 D + +VG+ + M++L LI ++A ++V+V GE+GTGKE+VAR IH N PF Sbjct: 138 DRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGIHYAGQEENLPF 197 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + I+CAA+PE LLESELFG+ +GAFTGA A K G I+ A+ GTLFLDEIG++PL LQ K Sbjct: 198 VPIDCAAVPETLLESELFGHSRGAFTGA-AEQKKGQIELAHGGTLFLDEIGELPLALQKK 256 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LR ++ +EI+ +G + +VD+RII+ATN++L IA G++REDLFYRLNVI I +PPL Sbjct: 257 FLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPL 316 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER++DI LV++FL + + G G+ +V+E+ + WPGN+REL N++E V V+ Sbjct: 317 RERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNVRELENVIERAV-VL 375 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-H 563 G+ I + LPP L E S S D G L EMEK++I + L + Sbjct: 376 CMGDSIAMSCLPPKL-----------QERSAPAPSTD---GVNLMEMEKRLIVQTLEKTE 421 Query: 564 NSKKQVADELGIGIATLYRKIKKYELL 590 ++ A ELGI L K+K + LL Sbjct: 422 QNQSAAARELGISRKQLRTKMKHHGLL 448 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/355 (41%), Positives = 217/355 (61%), Gaps = 22/355 (6%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 +L ++G+ LF + Q S D+ + ++G M +LK++ +R+A ++V Sbjct: 227 RLQVLEGKVLF---YQQELQSIQ----GDQDAWQGILGVSPAMVRLKKMAARVARGEANV 279 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE++A+AIH+ S RRN+P I INCAAIPE LLE+ELFGY +GAFTGA+ G Sbjct: 280 LITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIPENLLEAELFGYEEGAFTGAARGG 339 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A+ GT+FLDE+GD+PL +Q KLLR ++ R +G I+VD+RII+ATNQ+ Sbjct: 340 KPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQD 399 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L A GKFR DL+YRL V+ +T+PPLRER D+E+LV + R G+ P+ Sbjct: 400 LLALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPE 459 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVV-PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 V + ++ WPGN+REL N++E+ N + P E+I LP T Q + Sbjct: 460 VQRLFSRYSWPGNVRELENVLEHAFNFLDPGEEIITLKHLP-------ATMQRTIGGGGG 512 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADE-LGIGIATLYRKIKKYEL 589 L +A+ E+++I +AL+ KQ A LGI + LY+K+K+Y++ Sbjct: 513 LKLK------SAVATAEREVILKALAAAGGNKQEAARLLGIHPSGLYQKLKRYDI 561 >UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RK7_SYMTH Length = 465 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 245/453 (54%), Gaps = 39/453 (8%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-PI------RFRPLTFE 213 + ++D + +GVL V + R++ VN + LG + ++ + P ++ P Sbjct: 18 VVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPVLR 77 Query: 214 SNFTHGHMQHIV-----------------SWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 G Q +V W + I +L ++ RQ+ M + Sbjct: 78 RCLETGERQAMVLERAGRRLALTAVPLPEGWVLATARDITELDRLE-RQVERMTQERERY 136 Query: 257 SFSVAN-APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 +A + ++VG M+++ LI R+AP S+++++GESG GK V+A IH+ Sbjct: 137 RHELAGLRAGQAGRAEVVGSSLAMQRVMDLIRRVAPVDSTILLLGESGVGKGVLAAEIHR 196 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 LS RR+ PF+ I+CAA+P LLESELF Y G+FTGA GK GLI+ A+ GTLF+DEIG Sbjct: 197 LSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPGLIEQAHGGTLFIDEIG 256 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 D+PL LQ KLL I+ R I+ +GA +P VDIRII+AT+++L +AEG+FR DL+YRLN Sbjct: 257 DVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGRFRADLYYRLN 316 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 V+P+ +PPLRER EDI +L FL R V + P+ VE L + WPGN+REL N Sbjct: 317 VVPVKIPPLRERPEDIPVLARTFLDRFCARY-RVERTLTPEAVERLVAYSWPGNVRELEN 375 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 L+E LV + E I LP + ++ + EA +L E ++ Sbjct: 376 LVERLVVTLDERE-IRPEHLPLPAPGGPPVQVREIVPLKEAVAAL-----------ELEL 423 Query: 556 IREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 + EA R S +V LGI T RKI++++ Sbjct: 424 VGEAYRRFGSSVKVGRALGIHQTTAARKIREWK 456 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 145/341 (42%), Positives = 219/341 (64%), Gaps = 14/341 (4%) Query: 250 AFHQSHT--SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 A QS T +F A P ++G MR + + I R+A S ++V++ GESGTGKE Sbjct: 118 AVAQSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKE 177 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VARAIH S RRN PFI +NCA +P+ LLESELFGY KGAFTGAS+ K G + A+ G Sbjct: 178 LVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASS-LKVGRFELAHEG 236 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+F DEIG++ L QAKLLRAI+ +E +G + I+V++RI++ATN+ L Q + EG+FR Sbjct: 237 TIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFR 296 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDLF+RLNV+ I +PPLR+R+EDI LL+ +FL + + G + + +++L + WP Sbjct: 297 EDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWP 356 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL-LNNGTTEQSDVTEVSEAHLSLDDAGGT 546 GN+REL N++E + ++ G +I +P ++ L ++Q E+ + +LSL Sbjct: 357 GNVRELENVVERSI-IMARGAII----VPEDIQLGATVSQQPTELEILDENLSLKQ---- 407 Query: 547 ALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKK 586 + ++E+++I +AL +N + VA L I +LY K+K+ Sbjct: 408 IISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKE 448 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/326 (42%), Positives = 200/326 (61%), Gaps = 21/326 (6%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 H + ++ M+Q+ +S+IA + S+V + GESGTGKE++A+ +H S R PF+AI Sbjct: 140 HFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKVLHLTSTRSRGPFVAI 199 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC AIPE LLESELFG+ KGAFTGA K GL+Q A GTLF+DEI ++ LQ KLLR Sbjct: 200 NCGAIPEGLLESELFGHTKGAFTGAD-QAKKGLLQQAERGTLFMDEIAELTPALQVKLLR 258 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 + E P+G P++VD R+++ATNQ+L + I +GKFREDL+YR++VIP+ LPPLRER Sbjct: 259 VFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYRIHVIPVYLPPLRER 318 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 EDI LL H+FL + PG +PD + L HRWPGN+REL+N++E V + G Sbjct: 319 PEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVRELANVVERAVVLAREG 378 Query: 508 EVI-DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 + + LL +++ TE +T A +E E+ + + L H++K Sbjct: 379 NICAEHLLLEREAVSDSGTELPPLT--------------AARDEFERAYLIQVL--HSTK 422 Query: 567 KQV---ADELGIGIATLYRKIKKYEL 589 V A + G A Y+ ++KY+L Sbjct: 423 GNVSRAAAKAGRYRAEFYKLLRKYDL 448 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/332 (42%), Positives = 212/332 (63%), Gaps = 18/332 (5%) Query: 260 VAN---APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 VAN P E + G+ + + ++ +A + +V+++GESGTGKE+ A++IH Sbjct: 365 VANRGGTPASFKFEDIKGKSTSLAKSIQIAQNVARTGYNVLLIGESGTGKELFAQSIHN- 423 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S + + PF+A+NCA++P L+ESELFGY G FTGA NG+ G I+ AN GTLFLDEIGD Sbjct: 424 SYKADGPFVAVNCASLPRNLIESELFGYEGGTFTGADRNGRPGKIELANGGTLFLDEIGD 483 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 MPL +Q LLR +E + + +G S I VD R+I+ATN+NL+ + E FREDL++RL++ Sbjct: 484 MPLEIQPVLLRVLEEKRVTRLGGSRGIPVDFRVIAATNKNLSLMVKEKTFREDLYFRLSI 543 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 IT+PPLRER D+ LL YF+ +++L S P ++P + ++++ WPGN+R+L N Sbjct: 544 FKITIPPLRERDHDVILLAEYFIEDISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNA 603 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 M Y VN+ +G VI+ + LP + +N T+V+ L+ L E+EK++I Sbjct: 604 MVYGVNMSTNG-VIELSNLPDEMTSNDYFR----TKVNTRKLT--------LAEIEKEVI 650 Query: 557 REALSRH-NSKKQVADELGIGIATLYRKIKKY 587 EALS+ N + + LGIG T+YRK+K+Y Sbjct: 651 FEALSQTGNDASEASRILGIGRTTIYRKLKEY 682 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/338 (45%), Positives = 208/338 (61%), Gaps = 20/338 (5%) Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P LVG +R ++RLI ++A + +SV+V+GESGTGKEVVAR IH S R NKPFI Sbjct: 132 PIFRSLVGNSTSIRTVRRLIEQVADTEASVLVLGESGTGKEVVARNIHAFSSRANKPFIP 191 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INC AIP +LLESELFG+ KGAFTGA + G + AN+GTLFLDEIGDMPL +Q KLL Sbjct: 192 INCGAIPGELLESELFGHEKGAFTGAITT-RQGRFELANSGTLFLDEIGDMPLPMQVKLL 250 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ R +G++ I V++RII+AT++NL + I EGKFREDLFYRLNV PI +PPLRE Sbjct: 251 RVLQERCFERVGSNKSIDVNVRIIAATHRNLEEAIKEGKFREDLFYRLNVFPIEMPPLRE 310 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYP--GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 R EDI L+ F L R P + PD + L ++ WPGN+REL+NL+E L + Sbjct: 311 RAEDIPLI---FNELIARIESENRPIVHLMPDAMAALSEYSWPGNIRELANLVERLTILY 367 Query: 505 PSGEVIDSTLLPPNLLNNGTTE-QSDVTEVSEAHL-------SLDDAGGTALEE----ME 552 P G +++ LP + + T SD E L ++ + G L+E E Sbjct: 368 PKG-ILNKEDLPQKIRSEYKTYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTE 426 Query: 553 KQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 +I +AL+ + A+ L + TL K++KY L Sbjct: 427 LALISQALNESDWVVSHAANYLNMRRTTLVEKMRKYGL 464 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 199/327 (60%), Gaps = 23/327 (7%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E++V M + LI A + SSV++ GESGTGKE+VA A+H S R +KPFI + Sbjct: 138 RFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAVHNRSPRLDKPFIKV 197 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLE+E+ GY KGAFTGA K G ++ A+ GT F DEIGDM LQAKLLR Sbjct: 198 NCAAIPENLLEAEMCGYEKGAFTGALQR-KKGKLETADGGTFFFDEIGDMSFPLQAKLLR 256 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +E R +G + P+ VDIR I AT + L I +GKFREDL+YR+NV+PITLPPLRER Sbjct: 257 VLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRER 316 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LL+H+F+ R+ G IAP+ +E+LR + +PGN+REL + +E V S Sbjct: 317 ADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELKHAVEMAVTFC-SD 375 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD----DAGG--TALEEMEKQMIREALS 561 VI + LP E+ E +L DAG ++ +E E+Q I L Sbjct: 376 RVITPSCLP--------------GEIREGSPALQGWRGDAGALESSRKETERQTIINVLK 421 Query: 562 RHNSKKQVADE-LGIGIATLYRKIKKY 587 + +K A + LGI TL+RK+K+Y Sbjct: 422 KTGGRKMAAAKALGISRETLWRKLKEY 448 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 138/317 (43%), Positives = 198/317 (62%), Gaps = 18/317 (5%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +V E R M+ ++RLI R+APS ++V+V GE GTGKEVVAR IH S R + F+A+N Sbjct: 172 MVSESRSMQPVRRLIERVAPSGANVLVTGEHGTGKEVVARLIHGGSTRSERAFVAVNSGG 231 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 + E + ESELFG+VKGAFT A ++ + G + A+ GTLFLDEIG+MPL QAKLLR ++ Sbjct: 232 LSEGVFESELFGHVKGAFTDAKSD-RIGCFELADGGTLFLDEIGNMPLSQQAKLLRVLQT 290 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 E+ P+G+S +VD+R++SATN +L++ +AEG+FREDL YRLN + + LPPLRER+EDI Sbjct: 291 GELHPVGSSKTRRVDVRVVSATNVDLSRAVAEGRFREDLLYRLNTVEVQLPPLRERREDI 350 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL +FL RR G ++ + +E L + WPGN+REL + +E + + EV Sbjct: 351 PLLAAHFLAEQGRRYGRPNVRLSSEALEALLAYAWPGNVRELEHAVERAMLMASGDEVTQ 410 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVA 570 LL G ++T LEE+E+ +I AL+RH + A Sbjct: 411 EDLLLKRAGREGMARLEEMT----------------LEEVERYLIERALARHEGNVSEAA 454 Query: 571 DELGIGIATLYRKIKKY 587 LG+ + LYR+++ Y Sbjct: 455 KGLGLSRSALYRRLQYY 471 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 165/451 (36%), Positives = 246/451 (54%), Gaps = 57/451 (12%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPL------------ 210 T+++ +GV V+D+ + VN +G ++NIIG+ I RF PL Sbjct: 252 TVLEVAYEGVAVLDEAGMITLVNARFCNKIGKPKDNIIGENINRFIPLSHNQMPLSVLEI 311 Query: 211 ------------TFESNFTHGHMQHIVSWDDKSELIIGQLH--NIQGRQLFLMAFHQSHT 256 T E N T G + I D I+ Q++ N+Q + + T Sbjct: 312 NAKPCVVSTLPITKEGN-TKGFVVKIYEDLDNLADIVQQINRINMQLNYYKNELYKVNGT 370 Query: 257 SFSVANAPDEPHIEQLVGECRVMR--QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 S++V + CR R LK + ++ S S+V++ GESGTGKE+ A +IH Sbjct: 371 SYTVGSIV-----------CRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIH 419 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S RR +PFI +NC+AIP +L E+ELFGY GAFTGA GK G + A+ GT+FLDEI Sbjct: 420 NASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEI 479 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GDMPL LQ+KLLR I+ +EI +G +VD+RII+ATN++L + + EG FREDL++R+ Sbjct: 480 GDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRI 539 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV+ + +PPLR+R++DI LL F+ + +LG GI +E L ++ WPGN+REL Sbjct: 540 NVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALEALTRYDWPGNIRELE 599 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 N++E ++N SG +I+ LP ++ + T+ L ME + Sbjct: 600 NIIERMLNYRESG-LIELQDLPEEIVGRPGGMAAKATQ--------------TLAVMEME 644 Query: 555 MIREALSRH-NSKKQVADELGIGIATLYRKI 584 I+ AL+ +K + A LGI + LY K+ Sbjct: 645 TIQAALAEAGGNKSKAARLLGISRSKLYEKL 675 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 164/466 (35%), Positives = 263/466 (56%), Gaps = 52/466 (11%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG---- 202 K+L+ GP A ++D++++GV+ + + +V ++N+ A + LG+ Q + G Sbjct: 33 KVLDALGP--------ANILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQ 84 Query: 203 KPIRFRPLT-----------------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 K +R + +E + T H + + + + L H + G + Sbjct: 85 KAMRSSVCSARCLIEKTIESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVE 144 Query: 246 LFLMAFHQSHTSFSVANAPDEPH----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 +F H +A E +++G+ MR+L L+ +A S S+V++ GE Sbjct: 145 IF-------HDVTQLAELKKELKGRYAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGE 197 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE++A AIH+ S R++ PFI +NCAA+ E +LESELFG+V+GAFTGA ++ K G Sbjct: 198 SGTGKELIAHAIHENSPRKDGPFIKVNCAALSEGVLESELFGHVRGAFTGAVSS-KPGRF 256 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + A+ GTLFLDEIG++ +Q KLLR ++ E +G + ++VD+R+I+ATN++L I Sbjct: 257 ELASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAI 316 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 G FR DL+YRL V+P+ LPPLRER+EDI LL+ FL + G G++ + IL Sbjct: 317 DAGTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNIL 376 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 H +PGN+REL N++E+ V ++ +G I LP +L E+S +V+ + Sbjct: 377 MNHSYPGNIRELQNIIEHAV-LLSTGRTIGVRELPRDLAP--IPEESSFADVALSR---- 429 Query: 542 DAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKK 586 AL ME MIR+A+ + + Q A LGIG +TL+RK+++ Sbjct: 430 ---SNALRTMEDVMIRKAVEKTQGNMSQAAKLLGIGRSTLWRKLRE 472 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 133/321 (41%), Positives = 208/321 (64%), Gaps = 7/321 (2%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + +V + + M ++ +L+ R+A S ++V+ +GESG GK V AR +H S RRN+PFI +NC Sbjct: 145 QNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGKNVFARFLHLSSSRRNEPFIEVNC 204 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 +AIPE L ESE+FGY KG+FTGA GK GLI+ A+ GTLFLDEIG++PL +QAKLL+ + Sbjct: 205 SAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQGTLFLDEIGELPLSMQAKLLKVL 264 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + ++++ +G VD R+I++TN+NL + + +G FR+DLFYRL+VIPI +P LRER+E Sbjct: 265 QEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIFRQDLFYRLHVIPIYVPSLRERKE 324 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI +L YFL ++ + P +V+ L + WPGN+REL N++E LV + + Sbjct: 325 DIFMLAQYFLEKCNQKY-HMDKYFHPSIVDHLVHYHWPGNVRELENMIERLV-ITSETKA 382 Query: 510 IDSTLLPPNLLNNGTTEQS-DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ 568 I LP ++ + + + E +L + A+E++E+Q + A + + + Sbjct: 383 IYPEYLPFSIQKHSKVAATPSLAEKRSEPSTLKE----AVEQVERQWLLRAAQQCKTTYE 438 Query: 569 VADELGIGIATLYRKIKKYEL 589 +AD LGI T+ RK+KK+ + Sbjct: 439 MADYLGISQPTVVRKLKKHRI 459 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 259/459 (56%), Gaps = 43/459 (9%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ-NNIIGKPIR--------------FRP 209 +ID++D GV++ D + R +VN T + +G ++ ++ GK ++ +P Sbjct: 43 IIDHLD-GVVITDAQGRYVYVNDTWSEMMGGIKLEDVKGKYVKDLIPDTKIDFVLKTGKP 101 Query: 210 LTFESNFTHGHMQ------HIVSWDDKSELIIGQLHNI-QGRQLFL-MAFHQSHTSFSVA 261 +T G + +I ++ + +L+ G +H I +G + + +F + + + Sbjct: 102 ITGHVIIAKGPSKIKSFSTYIPIFNKQGKLVAGFIHVIIKGMENAIDFSFRINSMATQLE 161 Query: 262 NAPDEPH--------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 E I+ +VG+ +++LKR I + + + S+V++ GE+G GKE+VA +I Sbjct: 162 YYQQELKKIRGAKYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKELVAHSI 221 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H LS R + PF+ +NC+AIP +LLESE FGY +GAFTGA GK G + AN G+LFLDE Sbjct: 222 HDLSNRDSFPFVKVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGSLFLDE 281 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 I +PL Q KLLRA++ +EI +G I VD+R+I+A N NL + I E KFR DLFYR Sbjct: 282 INQLPLFSQPKLLRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRSDLFYR 341 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK--HRWPGNLR 491 LNV+ I +PPLR+R+EDI L+V + +LG PGI+ D L + + WPGN+R Sbjct: 342 LNVLKIVIPPLRKRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTEVHYDWPGNIR 401 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS-LDDAGGTALEE 550 EL N++E +N GE ++ + + ++S+ ++S + D EE Sbjct: 402 ELQNIVERAMN-SSWGETLEWVHFKDYFR---SKNPKFIDKISQNNMSKIKDIK----EE 453 Query: 551 MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 +EK+ I AL SK + A +LGI Y+K+KKYE+ Sbjct: 454 LEKETIINALENSKSKAEAAKKLGISRTAFYKKLKKYEI 492 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 134/322 (41%), Positives = 202/322 (62%), Gaps = 18/322 (5%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 ++++G+ ++ +I+ S S+++++GESGTGKEV A++IH S R + PFIA+N Sbjct: 335 FDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFIALN 394 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 C AIP+QL+ESELFGY +GAFTGA G G + A+ GT+ LDEIG+MPL +Q KLLR Sbjct: 395 CGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLRV 454 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ I IG+S I VD+RII+ATN++L + + G+FR+DL+YRLNV+P+ LPPLRER+ Sbjct: 455 VQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRERK 514 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 DI L++ Y + ++RL P I+ + ++ + + WPGN+REL N++E ++N Sbjct: 515 GDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELENVVELIIN------ 568 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-K 567 + +P NG + +SE L LD A EK+ + + L + Sbjct: 569 ---TESIPSGYFQNGNCYNEVLINISEDSLKLDFA--------EKEHLVKVLKKFKGNIT 617 Query: 568 QVADELGIGIATLYRKIKKYEL 589 + A+ LGI TLY KIKKY + Sbjct: 618 RSAEALGIRRNTLYSKIKKYNI 639 >UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A511_ALHEH Length = 662 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/323 (44%), Positives = 205/323 (63%), Gaps = 14/323 (4%) Query: 269 IEQLVG-ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 +E L G + R+ R + R RI +++ GE+GTGKE+ ARA+H S RR+ PF+A+ Sbjct: 346 LEALKGNDPRMARNVNRAY-RIIDKDIPILLNGETGTGKELFARAVHTASSRRDGPFVAV 404 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCA+IPE L+ESELFGY GAFTGA NG+ G I A+ GTLFLDEIGDMPL LQA+LLR Sbjct: 405 NCASIPEPLIESELFGYKGGAFTGADRNGRKGKILQAHGGTLFLDEIGDMPLELQARLLR 464 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +E REI+PIG P VD+ ++SAT+ NL + +AEG+FREDL+YRLN + +TLPPLR+R Sbjct: 465 VLEEREIVPIGGDKPQAVDVYLVSATHHNLPELVAEGRFREDLYYRLNGLTLTLPPLRDR 524 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 D + ++ L L + G V I + +LR H WPGN+R+L N++ V + G Sbjct: 525 A-DCQDVIRCILRLESD--GRV--DIDQAALAVLRNHPWPGNIRQLRNVLRTAV-ALSDG 578 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK- 566 E + LP ++L+ T D +V E + GG L E++ ++ AL +H Sbjct: 579 ETLTVEDLPDDVLDAAETAGDD--QVIEGTCT---GGGDPLANAERRALQAALEQHGGNV 633 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A+ LG+ TLYRK++++ L Sbjct: 634 SRTAESLGVSRNTLYRKMRRHGL 656 >UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK9_9BACT Length = 535 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/319 (44%), Positives = 196/319 (61%), Gaps = 19/319 (5%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 +V + M+++ L R A +++++ GESG GKEV+AR IH S +KPF+A+NC A Sbjct: 235 MVVRSKKMQEVTDLAHRAARVNTTILICGESGVGKEVLARYIHSKSPDSDKPFVAVNCGA 294 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 E LLESELFG+ KG+FTGA K GL + A GTLFLDEIG+ +Q KLLR I+ Sbjct: 295 FSESLLESELFGHAKGSFTGAEKEHK-GLFEEAEGGTLFLDEIGETSKNMQVKLLRVIQE 353 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +EI +G + P ++++RIISATN+NL + + EG FR+DLFYRLNVI I +PPL +R EDI Sbjct: 354 KEIRRVGENQPRKINLRIISATNKNLEKEVQEGNFRKDLFYRLNVINIKIPPLCQRTEDI 413 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 L H F+ + GIAP E L ++ WPGN+REL N++ + S +I+ Sbjct: 414 LPLAHCFIKSAAEEMNVQVTGIAPSASEALLRYNWPGNVRELHNVIHRAAALADSS-MIE 472 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVA 570 LPP LL + + + ++ L EMEK+ IR L +N KK+ A Sbjct: 473 ENDLPPELLTSCSAPSTPIS----------------LAEMEKEHIRNCLIINNGDKKRTA 516 Query: 571 DELGIGIATLYRKIKKYEL 589 L IGIATLYRKIK+Y+L Sbjct: 517 QTLNIGIATLYRKIKEYQL 535 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 262/469 (55%), Gaps = 59/469 (12%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-FRPLTFESNFTHG 219 ++ +D++ GV + D+E ++ +VN+ K G+ +++G + N T Sbjct: 24 VYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYEDVVGHYVDDLEAKGIFKNSTSP 83 Query: 220 HMQH---IVS------------------WDDKSELI--IGQLHNIQGRQLFLMAFHQSHT 256 H++ I+S +D+ +ELI + +I ++ + Sbjct: 84 HVRRENKIISSIGKAKDGVEMLITGKPIYDENNELIYVVVNQRDISDLEIMRQKLIVTEN 143 Query: 257 SFSVANAPDEPHIEQ-------------LVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 +V + E+ ++G+ +R + LI++IAP +V++ GESG Sbjct: 144 KMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSEEIRDVIYLINKIAPLDVTVLITGESG 203 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 GKEV+A I + S R+NK FI +NCAAIP LLESELFGY KGAFTGA K GL Q Sbjct: 204 VGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLLESELFGYEKGAFTGADK-AKKGLFQL 262 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GT+FLDEIGD+PL +Q KLLRA++ +E++P+G + ++D+RII+ATN++L+Q + E Sbjct: 263 ADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVGGTQIQKLDVRIIAATNKDLSQQVKE 322 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 GKFR+DL+YRLNV PI +PPLRER+ DI L YFL + ++ G ++ + +L Sbjct: 323 GKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYFLKQYNKKYGKSVV-LSSEAYSLLMN 381 Query: 484 HRWPGNLRELSNLMEYLV-----NVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 + WPGN+REL N++E L+ V + + I+ + P +L D+T+ SE L Sbjct: 382 YDWPGNVRELQNIIERLIIISDDQTVINKDQIEKIMFPNTML--------DITK-SEKGL 432 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 ++E+EK+++ + L + ++ A +L I +TL +K+KKY Sbjct: 433 K------EIIQEIEKEILIDVLKNTGTTRKAAKKLKIDQSTLVKKLKKY 475 >UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY50_DESAC Length = 455 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 171/473 (36%), Positives = 258/473 (54%), Gaps = 63/473 (13%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFT 217 ++ I+ ++++ M +GV+ +D ++ + N A + V IIG+ I + Sbjct: 5 VTSIYQSIVEEMTEGVVFLDADDVICICNPAAERIRRVKAERIIGRSI----YSLHPGRM 60 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLV---- 273 H ++ ++ KS I I ++ F F S+T+ APD ++ L+ Sbjct: 61 HDRIRQLIE-SLKSGRISSGSRIIHAQKRF---FSNSYTAI---KAPDGTYLGTLLISRD 113 Query: 274 --GECRVMRQLKRLISR-------------------------IAPSPSSVMVVGESGTGK 306 E R+ + + L SR + S+V+V GE+GTGK Sbjct: 114 VTEEKRLREENESLRSRQSDEKMKCLVVHSDAALRVMDMAVSLGQIDSTVLVTGENGTGK 173 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E V +H+ S RRN P + +NCAA+P+ L+ESELFG+VKGAFTGA+ N K G + AN Sbjct: 174 ECVVELLHQNSPRRNGPLVKVNCAALPDNLIESELFGFVKGAFTGATENRK-GKFELANG 232 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDE+GD+PL QAKLLR ++ R++ P+G S + +D+RI++ATN L+ +A GKF Sbjct: 233 GTLFLDEVGDLPLASQAKLLRVLQERKVQPLGGKSEVLIDVRIVAATNHILSDDVAGGKF 292 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDLFYRLNVI I +PPLRER+EDIE L FL + ++ ++ + + IL H + Sbjct: 293 REDLFYRLNVIHIDVPPLRERREDIEPLAEMFLDKFSTQMNKPVRHLSTEALNILLHHHF 352 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG--TTEQSDVTEVSEAHLSLDDAG 544 PGN+R+L + ME V + SGE+I LP +LL+ TT Q + G Sbjct: 353 PGNIRQLEHAMERAV-ALSSGELILPDDLPQDLLSASVVTTAQHTIQ------------G 399 Query: 545 GTALEE----MEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYELLNT 592 G AL+E E+ I AL + + KK + A+ LGI +L+ KI++Y L + Sbjct: 400 GLALKEAVDFFERDYIAAALKQCDYKKSKTAEHLGISRKSLWEKIQRYNLTDA 452 >UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPV3_ALKMQ Length = 627 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 217/354 (61%), Gaps = 21/354 (5%) Query: 238 LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 LHN++ Q LM + +F +++G+ MR ++ + ++ A + S+V+ Sbjct: 288 LHNLELAQNRLMGEDAAKEAFP-----------EIIGDSEEMRHIRMMAAKAAKTSSNVL 336 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 ++GESGTGK ++A+AIH+ + + F+ INC +IPE LLESE+FGY KGAFTGA+ GK Sbjct: 337 LLGESGTGKTILAKAIHRAGEKESMAFVQINCGSIPENLLESEMFGYEKGAFTGANKEGK 396 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 GL + A+ GTLFLDEIG++P LQ KLL I+ R +G + I V++RII+ATN+NL Sbjct: 397 KGLFEVADGGTLFLDEIGELPSALQVKLLHVIQHRSFYRVGGNEKINVNVRIIAATNRNL 456 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + +G+FREDL+YR+NV+PI +PPLR+R++DI+LLV LH ++ G ++ + Sbjct: 457 EEEMRQGRFREDLYYRINVLPIWIPPLRQRKDDIQLLVKKLLHRTCQQAGVEEKLLSAEA 516 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + LRK+ WPGN+REL N +E +++ DS +L + T+ + EA Sbjct: 517 LLKLRKYHWPGNIRELENTLERAMHLS------DSRILLSGQMMVKVTDSFVQYQYEEAP 570 Query: 538 LSLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 L A+ + EK++I E L ++K+ +LGI Y KIK+Y+++ Sbjct: 571 LPTIK---EAVRKCEKELINETLKHFKGNRKKAMQQLGIAKTRFYEKIKEYKII 621 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 133/319 (41%), Positives = 198/319 (62%), Gaps = 17/319 (5%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +L+G ++ K ++A + ++V++ GE+GTGKE+ AR IH++S + N PF+AINCA Sbjct: 265 RLIGRSEALQSCKCFARKVARTKATVLLTGETGTGKELFARLIHQMSNQANGPFVAINCA 324 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 A+PE LLE+ELFGY +GAFTGA G G + A+ GTLFLDE G+M LQAKLLR +E Sbjct: 325 AMPETLLEAELFGYEEGAFTGARRGGAVGKFEQASGGTLFLDEAGEMSNALQAKLLRVLE 384 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +++ +G+ P+Q D R+I+ATN +L Q +A+GKFR+DL+YRL I + +PPLRER+ED Sbjct: 385 TKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGKFRKDLYYRLVAITLNIPPLRERKED 444 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L+ F+ + G + D + ++ WPGN+REL+N ++Y++ + E + Sbjct: 445 IPYLISAFMDRFAQEYGLRHKRFCEDALHAFLEYDWPGNVRELANAIDYIM-AIGEEEKV 503 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQV 569 S LPP L N H + ++ T EK+ I +A+ N +K + Sbjct: 504 TSNTLPPFLRN---------------HAAKKESLKTVARRSEKERIEQAIVLANGNKAKA 548 Query: 570 ADELGIGIATLYRKIKKYE 588 A LGI ATLYRK+K+ E Sbjct: 549 AKLLGIHRATLYRKLKEQE 567 >UniRef50_C0Z9M8 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9M8_BREBN Length = 467 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 208/324 (64%), Gaps = 6/324 (1%) Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 E H E V + M+ ++RLI ++A S+V+++GESG GK V+A+ IH+ S R F+ Sbjct: 147 EKHQEGFVAVSQPMQAIERLIKKVAAVDSTVLILGESGVGKNVIAKEIHRNSRRAGGQFV 206 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 INC +IPE LLESELFGY G+FTGA+ GK G+I+ AN GTL LDE+G++PL LQAKL Sbjct: 207 EINCGSIPEGLLESELFGYEAGSFTGAAKQGKQGIIEMANQGTLLLDELGELPLTLQAKL 266 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 L+ I+ + + +G++ VD R+I+ATN++L + + EGKFR+DL++RLNV+PI +PPLR Sbjct: 267 LKVIQEKRLQRVGSTQYRDVDFRLIAATNRDLEKMVKEGKFRQDLYFRLNVVPIHVPPLR 326 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 R EDI L+ + R G + + P V L +H WPGN+REL N++E +V V Sbjct: 327 NRPEDIAALLKRVVRSLNERYG-MDKRLDPAVTHALMQHEWPGNVRELENVLERMV-VTA 384 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 EVI + LP + G + + ++ + +SL + ALE++E++ +R A + Sbjct: 385 DEEVITPSHLPAEIRLAGEEQVAMEPSLATSKMSLRE----ALEQVEEKWLRYASEHCRT 440 Query: 566 KKQVADELGIGIATLYRKIKKYEL 589 ++A+ LGI ++ RK++KY + Sbjct: 441 TGEIAEFLGISQPSVVRKLQKYRI 464 >UniRef50_A3ZZQ6 Nitrogen fixation protein anfA (Sigma-54 dependendent transcription regulator) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZQ6_9PLAN Length = 612 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 204/327 (62%), Gaps = 31/327 (9%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 ++L+GE R M +LK+ I+RIA + +VMV GESG GKE+VARA+HK S R ++P +++N Sbjct: 309 FDELIGESRPMVELKQKIARIAKAGGAVMVRGESGAGKELVARALHKTSSRSDRPMLSVN 368 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAA+PE L+ES+LFG+ KGAFTGA + G Q A+ GTLFLDE+G+M L QAKLLR Sbjct: 369 CAALPESLIESQLFGHKKGAFTGADTD-HVGFFQQADGGTLFLDEVGEMTLDGQAKLLRI 427 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 +E LP+GA+ + VD+R+I+ATN++LA+F+ E +FREDL+YRL V + +PPLRER Sbjct: 428 LEGHPFLPLGATKEVSVDVRLIAATNRDLAEFVREKRFREDLYYRLCVFELYIPPLRERG 487 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 EDIE L ++FL R+ G ++ + L ++WPGN+R+L N+++ V + Sbjct: 488 EDIETLANHFLDHFKRQHGRPELMLSDAAKKKLLNYQWPGNVRQLRNVLDSAVVLA---- 543 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM-----EKQMIREALSRH 563 DS ++ P L L DAG E + EK++I EA+ R Sbjct: 544 --DSAMIEPR------------------DLGLRDAGLGEPESLRFDFWEKKLIEEAMERT 583 Query: 564 NSK-KQVADELGIGIATLYRKIKKYEL 589 + LG+ ATLYRK+ +Y + Sbjct: 584 GGNVSETIKLLGVSRATLYRKLDEYNI 610 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 204/337 (60%), Gaps = 18/337 (5%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E LVG R M Q+ + I R AP+ + V+V GESGTGKE+VARA+++ S R KPF+ INC Sbjct: 144 EALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINC 203 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIP+ LLESELFGY KGAFTGA+ N + G I+ AN GT+FLDEIGDMPL +QAKLLR + Sbjct: 204 VAIPDTLLESELFGYEKGAFTGAT-NRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLL 262 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + ++I +G PI VD+RII+ATN +L +A+G+FREDL+YRL V+ + LPPLRER E Sbjct: 263 QEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSE 322 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI L YFL +R + PGI P+ + L WPGN+REL N + + G + Sbjct: 323 DIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPL 382 Query: 510 IDSTLLPPNLLNNGTTEQSD-------------VTEVSEAHLSLDDAGG---TALEEMEK 553 + L + G S+ + E+ LS D + ++ + + Sbjct: 383 GEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGR 442 Query: 554 QMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 ++REAL ++ + A LG+ TL KI+KY L Sbjct: 443 LVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 171/475 (36%), Positives = 248/475 (52%), Gaps = 57/475 (12%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFES 214 + + + T+I D V V+D + V+ A K V N IIG+PI RF Sbjct: 94 NELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRF------- 146 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQ-------------------------------- 242 F + ++ + S D I+ Q H + Sbjct: 147 -FDYKDLEILQSLHDGKS-IVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQV 204 Query: 243 --GRQLFLMAFHQSHTSFSVANAPDE--PHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 +LF M+ VA DE P + + G+ V+++ +L ++ S+V++ Sbjct: 205 ALNEKLFNMSHEMHRLEQEVAKYKDESDPFL-AMNGKSPVIQRTIQLARKVCSVKSTVLI 263 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESG GKEV A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK Sbjct: 264 LGESGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKK 323 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G I+ A GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L Sbjct: 324 GKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQ 383 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + +G FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ Sbjct: 384 EEMRKGTFREDLYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIM 443 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 L + WPGN+REL N++E LV G +I LP + TTE D L Sbjct: 444 HELLHYNWPGNIRELRNVVERLVVFATDG-IIKQEYLPFH-----TTETLDNHTAHSLLL 497 Query: 539 SLDDAGGTALEEM---EKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 S ++ + EEM EK++I AL N K + A +LG+ ATLY ++KK L Sbjct: 498 SNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLRL 552 >UniRef50_C6JR82 Sigma-54-dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR82_FUSVA Length = 466 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 145/350 (41%), Positives = 210/350 (60%), Gaps = 9/350 (2%) Query: 246 LFLMAFHQSHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 L+ A H SF + P E H ++ VM+ + L +AP ++V+++GESGT Sbjct: 120 LYQEAIHNEVKSF-IKLPPSEAHESNNIIAVSPVMKSIINLADTLAPLDTTVIILGESGT 178 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKEV+AR IH+ S R +K + INCA++PE LLESELFGY KGAFTGAS+ GK GL +AA Sbjct: 179 GKEVLARYIHEKSQRASKDMVIINCASLPESLLESELFGYEKGAFTGASSQGKKGLFEAA 238 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 N TLFLDEI +PL LQ K+LRAIE + I IG++ +V+ R+I+ATN++L + + E Sbjct: 239 NDSTLFLDEINSLPLALQGKILRAIETKTISRIGSTVTRKVNFRLITATNEDLLKMVHEK 298 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FREDL+YRLN++PI LPPL+ER+EDI LV YF + + ++ + + Sbjct: 299 RFREDLYYRLNIVPIYLPPLQERKEDILPLVEYFRKYYCNIYNKT-KIFSQKTLKAILDY 357 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS----- 539 +WPGN+REL N +E ++ +GE+I+ + + P L + + E Sbjct: 358 KWPGNIRELRNFVERSF-IMITGEIIELSNIAPLLFIERKPSSNSNSSSDELGFCNNFEI 416 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 D + LEE EK+ I+ AL ++ S + A+ L + RK KKY L Sbjct: 417 KDQSLNEYLEECEKKYIQYALEKYGSTYKAAEFLKTSQTMIARKKKKYNL 466 >UniRef50_C0ZBK7 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBK7_BREBN Length = 473 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 140/325 (43%), Positives = 204/325 (62%), Gaps = 23/325 (7%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + L+G R L L+ + AP ++V + GE+G GK +A IH+LS R + PF+ +NC Sbjct: 156 QTLIGNSRSYLALLELMKKAAPVDTTVFITGETGVGKSYLAEQIHQLSERSSGPFVHVNC 215 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 +AIPE L+ESELFGY KGAFTGAS +GK GL++ A+ GTLFLDEI ++P LQ+KLL + Sbjct: 216 SAIPETLIESELFGYHKGAFTGASHSGKIGLVKMADKGTLFLDEISELPYHLQSKLLLLL 275 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + + +PIG + DIRII+ATN NL + + GKFR DL+YRLN++PI +PPLRER++ Sbjct: 276 QNKTFMPIGGTKTYTADIRIITATNANLQELVRLGKFRHDLYYRLNILPINVPPLRERKD 335 Query: 450 DIELLVHYFL------HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 DI L+H+ L H RR +P+V+++L ++ WPGN+REL NL+E +V + Sbjct: 336 DIFPLLHHNLQRFNSKHNQKRRF-------SPEVLDVLHQYEWPGNVRELENLVERIV-I 387 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA-LEEMEKQMIREALSR 562 + I + LP L + E+ E LSL T +E++E + I +AL Sbjct: 388 TSKLDEIQVSDLPEEL--------RSIRELEEGILSLGSLSLTERMEKIEVEFILQALRT 439 Query: 563 HNSKKQVADELGIGIATLYRKIKKY 587 H + ++ A LGI + L R+I+KY Sbjct: 440 HKTTRKTAAGLGITQSLLMRRIRKY 464 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/325 (42%), Positives = 203/325 (62%), Gaps = 14/325 (4%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + ++GE MR+L+ I ++AP+ V+V+GESGTGKE+VA +H+ S R + PF+ +NC Sbjct: 164 DDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVHRQSRRADGPFVKVNC 223 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP +L+ESELFG+ KG+F+GA+A + G + A+ GTLFLDEIGDM L QAK+LRA+ Sbjct: 224 AAIPSELIESELFGHEKGSFSGAAAR-RRGQFEVAHGGTLFLDEIGDMGLSAQAKVLRAL 282 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + E++ +G+ VD+RII+ATN++L + + G FREDLF+RLNV+P+T+PPLR+R + Sbjct: 283 QTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFFRLNVVPLTVPPLRDRLD 342 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ +L F L TR G + P V + LR+HRWPGN+REL N+ E + V+ SGE Sbjct: 343 DVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRELRNVCERM--VIMSGER 400 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM----EKQMIREALSRHNS 565 I + +P T L G L+E+ E+ I L H+ Sbjct: 401 ITAADVPE------TVGPRAAPPPPPGSADLSRYGEVPLKELRDLVERDYILSRLEEHDW 454 Query: 566 K-KQVADELGIGIATLYRKIKKYEL 589 Q A LG+ L++KIK++ L Sbjct: 455 NITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SE88_METPP Length = 482 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 134/318 (42%), Positives = 202/318 (63%), Gaps = 13/318 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++GE +++L +I R+A + ++V++ GESGTGKE+VA+AIH R ++PF+A+NC A Sbjct: 158 IIGESDGVKRLLGMIQRVAATEANVLIQGESGTGKELVAQAIHFGGNRAHRPFVAVNCGA 217 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP +L+ESELFG+VKGA+TGA A+ GLI+ A+ GTLFLDEI +MPL +Q KLLR ++ Sbjct: 218 IPAELIESELFGHVKGAYTGA-ASASEGLIREASGGTLFLDEISEMPLNVQVKLLRVLQE 276 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R++ P+G+ D R ++A+N+NL + G FR DL+YRLNVI I +PPLRER DI Sbjct: 277 RQVRPLGSGQSYITDTRFLAASNRNLKESAESGSFRADLYYRLNVITIHVPPLRERGADI 336 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 ELL +F+ L +R+ GS G+ D ++ L +H WPGN+REL N++E V Sbjct: 337 ELLARHFMQLFSRKFGSRVSGMDRDFIDFLHRHSWPGNVRELQNVIERAV---------- 386 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVAD 571 L ++L+ E++ E HL L ++EE K+++ RH + ++A Sbjct: 387 -ILADADILSAADLEETLALPAKETHLPLGSGLPLSVEEYIKEVVLLYQDRHG-EAELAA 444 Query: 572 ELGIGIATLYRKIKKYEL 589 LGIG L+ + + + L Sbjct: 445 MLGIGRKALWMRRRNWGL 462 >UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRZ0_DESMR Length = 523 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 239/453 (52%), Gaps = 26/453 (5%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL--- 210 P + + + T++DN+D+ V+ +D V +N A + + + +G+ +R PL Sbjct: 79 PHEKQANLLRTVLDNVDESVVAIDASGCVTLINNVARENFKCGRADPVGRHVRELPLPDH 138 Query: 211 ------------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSF 258 N T G + + + I+ + G + Sbjct: 139 AILGCLEGRRYNNVRKNVTVGRKR--LQYFATGRPILDAEGGVTGAVEIAKDAQEIRDLA 196 Query: 259 SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSG 318 P + ++G MRQ+ + +IA S + V + GESGTGK+++A+A+H SG Sbjct: 197 KSIYEPADVGFSDIIGASAAMRQVVAMAEKIASSEAIVTIRGESGTGKDMLAQAMHAASG 256 Query: 319 RRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 + F+AINCAA+PE L+ESELFGYV GAF+GA GK GL + A GT+F DEI +MP Sbjct: 257 LPGQ-FVAINCAAVPETLMESELFGYVGGAFSGARREGKPGLFELAKDGTVFFDEIAEMP 315 Query: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 L QAK+LR I+ + +G S Q + RII+ATN+NL QF+ +G FREDL+YR+NV+P Sbjct: 316 LAAQAKILRLIQNGRLRRLGDSRETQANARIITATNRNLEQFVEKGLFREDLYYRINVLP 375 Query: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 + +PPLRER EDI L +FL + RLG G P + L +H WPGN+REL N++E Sbjct: 376 LHIPPLRERPEDICALADHFLFQLSARLGKELTGFDPAARDKLVRHGWPGNVRELKNVVE 435 Query: 499 YLVNVVPSGEVIDS--TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 ++ VI LL L + V++V LSL A+E E+ ++ Sbjct: 436 R-AAILCDQPVIGERHVLLVHELGRDPLAGGGAVSDVG-GRLSLR----AAMERYERDLL 489 Query: 557 REALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 AL S +Q A ELG+ L +K+KK+ L Sbjct: 490 ESALKGRKSLRQAARELGLSHTALLQKVKKHRL 522 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 245/463 (52%), Gaps = 67/463 (14%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNF 216 + +F T++D G++ V+ + R+ N A + + IGK I + L E Sbjct: 193 ASLFRTVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVL 252 Query: 217 THGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFH---QSHTSFSVANAPDEPHIEQL- 272 T G + EL GQL + G ++ +VA D +I+Q+ Sbjct: 253 TTG----------RDEL--GQLLKVSGTRVLCNKVPIVVNGKPVGAVATFQDAGNIQQME 300 Query: 273 ---------------------VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 VG+ +R + A + SSV+++GE+GTGKEV A+ Sbjct: 301 ARIRREIYARGHVATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQ 360 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 +IH S R N PF+AINCAA+P Q+LESELFGYV GAFTGAS GK GL + A+ GT+FL Sbjct: 361 SIHNASARANGPFVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFL 420 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEI +M + Q KLLR ++ ++++ +G+ I VD+R+I+ATNQNL++ + E KFR DL+ Sbjct: 421 DEIAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLY 480 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHT----RRLGSVYPGIAPDVVEILRKHRWP 487 YRLNV+ + LPPLRER DI +FL H+ RRL P +E L +H WP Sbjct: 481 YRLNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRL-----AFTPAALERLARHPWP 535 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N +E +V V +V D+ L+ L ++ D A Sbjct: 536 GNVRELQNTIERIVAVCRQPQV-DAGLVAQMLEDDA-----------------DSGIEVA 577 Query: 548 LEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 + EK+ IR+AL+ K+ + A LG+ +TL+RK+KK L Sbjct: 578 AADSEKEQIRQALAIAKGKQGEAARLLGVSRSTLWRKMKKLGL 620 >UniRef50_Q6AJU9 Related to two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJU9_DESPS Length = 531 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 135/266 (50%), Positives = 186/266 (69%), Gaps = 4/266 (1%) Query: 262 NAPDEPH-IEQLVGECRVMRQLKRLISRIAPSP-SSVMVVGESGTGKEVVARAIHKLSGR 319 N +PH E + G+ MRQL LISRIA S+V++ GESGTGKE+VA+AIH+ S R Sbjct: 137 NIKAKPHSFEGMTGDSIPMRQLFDLISRIADDDYSTVLIRGESGTGKEMVAKAIHQQSKR 196 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 R + F+ +NCAAIPE+LLESELFGY KGAFTGA+ N K G IQ A+ GTLFLDEIGDM Sbjct: 197 RKRNFVPVNCAAIPEELLESELFGYSKGAFTGATTN-KIGRIQYADKGTLFLDEIGDMKP 255 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQAKLLR ++ RE P+G VD RI++AT+ NL + + +G+FREDL+YRL+VIP+ Sbjct: 256 SLQAKLLRVLQEREFEPVGGLKATPVDTRILAATHCNLEKLVEQGRFREDLYYRLSVIPL 315 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +PPLRER+ED+ LV F+ ++ + G + ++ L H+WPGN+REL NL+++ Sbjct: 316 NIPPLRERKEDLPHLVSLFVENYSLKRGRDLFSFSRRALDTLASHQWPGNVRELENLIQH 375 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTT 525 + +V+ +G +I+ LP + N G + Sbjct: 376 M-SVLHAGAIIEFDDLPEKIRNRGLS 400 >UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearothermophilus RepID=LIHY_BACST Length = 543 Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 161/444 (36%), Positives = 255/444 (57%), Gaps = 45/444 (10%) Query: 157 NISKIFATMIDNMDQ----GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF 212 N +I+ ++++M + GVLV+D + + + N A L V Q +I+ K + R ++ Sbjct: 134 NEEQIWKYVVESMGEETADGVLVLDQDQTILYANSAAYSFLRVKQGDIL-KEEQLREISH 192 Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD-EPH-IE 270 + +I + + G QLF+ F ++ + PD EP+ Sbjct: 193 Q--------------------LIKKETSKYGVQLFI--FKRAKRGPLLVTKPDKEPYRFG 230 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++V + R S + S ++V+++GE+G+GKEV+AR IH+ S RRN PF+A+N Sbjct: 231 RVVTYNPSFEKELRTASIASQSDANVLILGETGSGKEVLARTIHEQSPRRNGPFVALNAG 290 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP +L+ SELFGYV+GAFTGA G+ G + A+ GTLFLDEIGDMPL LQ LLR +E Sbjct: 291 AIPRELIASELFGYVEGAFTGARKGGRPGKFEVADGGTLFLDEIGDMPLELQVNLLRVLE 350 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIA-EGKFREDLFYRLNVIPITLPPLRERQE 449 R+++ IG +++R+I+ATN+NL + IA G FR DL+YRLNV I +PPLR+R+E Sbjct: 351 ERKVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVFTIHIPPLRDRKE 410 Query: 450 DIELLVHYFL-HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 DIE L FL + H G ++ +++L+ + WPGN+REL N++E + Sbjct: 411 DIETLSLQFLKNFHQHYCGKGTCHLSNSALQLLQSYNWPGNIRELRNVIERAFLLA---- 466 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ 568 + + +LP +L E+ A+ ++ + L+++EK+MI +AL S + Sbjct: 467 IDEPEILPIHL----------PEEIQNANCAIPPSSVNNLKDVEKKMIEQALKESKSLTE 516 Query: 569 VADELGIGIATLYRKIKKYELLNT 592 A +LGI +TLYRKIK++++ T Sbjct: 517 AAKKLGITRSTLYRKIKQWKIHKT 540 >UniRef50_Q18CQ7 Putative sigma-54-dependent transcriptional regulator n=19 Tax=Clostridium difficile RepID=Q18CQ7_CLOD6 Length = 670 Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 171/235 (72%), Gaps = 10/235 (4%) Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 L +++ S S+++ GESGTGKE++A++IH S R+N+PFIA+NCAA+PE LLES+LFGY Sbjct: 349 LAKKVSKSDLSILIRGESGTGKELIAQSIHNNSNRKNQPFIAVNCAAVPENLLESQLFGY 408 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 KG FTG +GK GL + AN GT+FLDEIGDMPL LQ KLLR ++ ++I+P+G+ + I Sbjct: 409 DKGTFTGGLKDGKQGLFELANNGTIFLDEIGDMPLELQTKLLRVLQEKQIMPVGSHNVIN 468 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 +D+RIISATN+NL Q I +FREDL+YRLN IPI +PPLRER+EDI +++ L + Sbjct: 469 IDVRIISATNKNLEQMIDNSQFREDLYYRLNTIPINIPPLRERKEDILIIME---DLINK 525 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL 519 +L I P+ ++++ + W GN+REL N+ YL N++ V++ LPPNL Sbjct: 526 KL-----VITPEAKKLIQNYMWKGNIRELQNVTSYL-NIMCEDIVLEKD-LPPNL 573 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 142/328 (43%), Positives = 203/328 (61%), Gaps = 16/328 (4%) Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 +PD P ++G + M L +I +IA + ++ +V+GESG GKE+VA AIH S R K Sbjct: 230 SPDRP--ANIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEK 287 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PFI NCAA+PE ++ESELFG+ KGAFTGA A + G + AN GT+FLDE+G++ L +Q Sbjct: 288 PFIKFNCAALPENIVESELFGHEKGAFTGALAT-RHGRFEMANNGTIFLDEVGELSLSVQ 346 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ +E +G S I+VD+R+I+ATN+NL + I +G+FREDLFYRLN+ PIT+P Sbjct: 347 AKLLRILQEKEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVP 406 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+ DI LL YF+ + + I+ +++L ++ WPGN+REL N +E V Sbjct: 407 PLRERKTDILLLADYFVEKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAV- 465 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 ++ VI LPP L T E S LD +EK+MI EAL R Sbjct: 466 ILSEDNVIHGYHLPPTL---QTAESSGTPYTGSLQQKLD--------AIEKEMIIEALKR 514 Query: 563 -HNSKKQVADELGIGIATLYRKIKKYEL 589 + + A +LG+ + +IKK+ + Sbjct: 515 TQGNMSRAAMQLGLSERIMGLRIKKFNI 542 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 146/332 (43%), Positives = 214/332 (64%), Gaps = 16/332 (4%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + ++G + M+ L + I R AP+ ++V++ GESGTGKE+VARA+++ S R +KPF+ INC Sbjct: 144 DAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAVYQHSLRADKPFLVINC 203 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIPE LLESELFGY KGAFTGA+ K G I+ AN GT+FLDEIGDMPL +QAK+LR + Sbjct: 204 VAIPETLLESELFGYEKGAFTGATGR-KVGKIEQANRGTVFLDEIGDMPLSIQAKILRLL 262 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + + + +G I VD+RII+ATN++L + G+FREDL+YRL V+ + +PPLRER Sbjct: 263 QEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYYRLKVVTMAMPPLRERPG 322 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME--YLVNV-VPS 506 DI LLV YFL ++R +G PG++ + + +L WPGN+REL N ++ + N+ P Sbjct: 323 DIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWPGNVRELGNTVKKALIFNLGAPL 382 Query: 507 G--EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG--TALEEMEKQ----MIRE 558 G EV ++ P L G ++D + ++ + A G + E++ + +IRE Sbjct: 383 GPDEVQKASGEP---LRGGGPAEADPGDSLARYVRRELASGRESLFEDLMDRFGLLVIRE 439 Query: 559 AL-SRHNSKKQVADELGIGIATLYRKIKKYEL 589 AL + ++ Q A LG+ TL KI+KY L Sbjct: 440 ALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CV14_9CLOT Length = 449 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 169/456 (37%), Positives = 241/456 (52%), Gaps = 56/456 (12%) Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-FRPL----------TFESN 215 D++D G+ + D+ + +VN+ LK G + GK + F+ L F Sbjct: 16 DSLDWGISIFDENGKFLWVNRYVLKCSGRPRKFYEGKSVYDFQSLGILDTPVCSEVFRLK 75 Query: 216 FTHGHMQHIVSWDDK-SELIIG-------------------QLHNIQGRQLFLMAFHQSH 255 H+Q+ + E I+ + +++ R ++ Q H Sbjct: 76 KKVTHLQYSYTGSGTLGEFIVTATPIFDSNGNVKYAVADRMDVRHLKARHELVLRERQQH 135 Query: 256 TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 + + E +L+ VM +L + + R A S +++ GESGTGKEV A IH+ Sbjct: 136 DASKIKV---ESKKLELIYRSGVMEKLVKDVERAAAVASVILLQGESGTGKEVFAHYIHE 192 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 S RN P I INCA++PE LLESELFGY KGAFTGA GK GLI+AA+ GTLFLDEI Sbjct: 193 NSPYRNGPMIEINCASMPESLLESELFGYTKGAFTGALNTGKEGLIEAADKGTLFLDEIN 252 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 MPL LQAKLLR +E++ I IG++ PI VD R+I+ATN++L + + E FR DL+YRLN Sbjct: 253 SMPLGLQAKLLRVLESKSITRIGSTKPIDVDFRLIAATNRSLVECVEERIFRADLYYRLN 312 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 VIP+T+PPLRER+EDI +L +FL R S+ A V + WPGN+REL N Sbjct: 313 VIPVTIPPLRERKEDIPVLTDFFLDKFCDRY-SLQKKFAKRVYRTFEAYSWPGNVRELKN 371 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLN-NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 ++E +V ++ + I +P ++ + NG G E EK+ Sbjct: 372 IVERMV-IMSTVSTITINEIPQSMFSENGF------------------PAGPEPEMDEKE 412 Query: 555 MIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 IR AL +N +++ A L I TL K+KKY L Sbjct: 413 RIRRALEINNGHREKTARYLNISRRTLQYKLKKYGL 448 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 142/324 (43%), Positives = 205/324 (63%), Gaps = 12/324 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++G M+ + + ++ + S+++++GESGTGKE+VA+AIH RR KPF+AI Sbjct: 152 RFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAI 211 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC AIP +LLESELFG+V+GAFTGA A+ KTG Q A+ GT+FLDEIG MPL LQ KLLR Sbjct: 212 NCGAIPAELLESELFGHVRGAFTGAVAD-KTGKFQQAHQGTIFLDEIGTMPLHLQMKLLR 270 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E+ +G+S I++D+R+ISATN NL + + +G+FR DL+YRLNVIPI LPPLRER Sbjct: 271 VLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRER 330 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI LL YFL + I P + L + WPGN+REL N++E V + S Sbjct: 331 REDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDS- 389 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE----MEKQMIREALSRH 563 I + LP N+ +G+ + + ++S L+ G + E +E+ +I+ A+ Sbjct: 390 IAIGKSDLPANI--SGSCCEDEDPQISCPRLT---ESGMDMPEVIAGIERCLIKSAMGLS 444 Query: 564 NS-KKQVADELGIGIATLYRKIKK 586 K + A L I TL KIK+ Sbjct: 445 GGVKARAASLLNIKRTTLVEKIKR 468 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 257 bits (657), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 163/448 (36%), Positives = 247/448 (55%), Gaps = 43/448 (9%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 T ++ MD+G++ +D R+ +N+ + + K I + F H H Q Sbjct: 262 TTLEVMDEGIITLDPSGRIINMNREVTRIFKIRPEEKSHKNI--------NEFLHTHSQV 313 Query: 224 IV------SWDDKSELIIGQ-----------LHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 S D + L+IG + N + +Q+ +H A A + Sbjct: 314 AALITAGKSVDIEENLVIGNDEQPYIINIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANR 373 Query: 267 P------HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 E +VGE +++ + R A S +V+++GESGTGKE+ A+AIH S Sbjct: 374 TGSIATYSFECIVGESEEIKKAVSIARRFATSSENVLLMGESGTGKELFAQAIHNHSCPL 433 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 PF+A+NCAA+P +L+ESELFGY G+FTGA G+ G I+ A+ GTLFLDEIGDMPL Sbjct: 434 G-PFMAVNCAAMPRELIESELFGYEGGSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLE 492 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 LQA LLRA+E ++I+ IG +VD R+I+ATN+NL + + E ++REDL++RL+V+ IT Sbjct: 493 LQAVLLRALEDKQIMRIGGRRYKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTIT 552 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +P LR R+ DI++L YF+ + ++ G P I + ++++ WPGN+R+L N + Y Sbjct: 553 IPSLRNRKNDIDVLSQYFIKNYCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYA 612 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA- 559 VN +VID+ LP +L + + Q E + + D +LE +EK I+ A Sbjct: 613 VNSA-HNDVIDTDSLPQYILLDSSPFQ------DEPNFTTD---SLSLEHLEKNAIKTAL 662 Query: 560 LSRHNSKKQVADELGIGIATLYRKIKKY 587 L NS A LGI +TLYRK+K Y Sbjct: 663 LHAKNSIPDAAKLLGISRSTLYRKLKDY 690 >UniRef50_A8V0D6 Sigma 54-dependent transcriptional activator containing CheY-like receiver domain (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V0D6_9AQUI Length = 385 Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 168/238 (70%), Gaps = 1/238 (0%) Query: 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 AN D P E LVG + + +K I +IAP +V++ GE+GTGKEV AR IH LS R+ Sbjct: 57 ANPEDFPEFELLVGNSKAISLIKESIRKIAPYDVNVLITGETGTGKEVAAREIHNLSKRK 116 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 +KPFIA+NCAAIP +LLESELFGY+KGAFTGA N K GLI+ A GTLFLDEIG++PL Sbjct: 117 DKPFIAVNCAAIPHELLESELFGYIKGAFTGAEKN-KKGLIEEAEGGTLFLDEIGELPLT 175 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 LQ+KLLR +E ++ P+G++ I D+RIISATN+NL + I EG+FREDL+YRL+ I + Sbjct: 176 LQSKLLRFLETKKFRPVGSTKEISTDVRIISATNRNLKKEIEEGRFREDLYYRLSTITLR 235 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 +P L+ER+EDI L++ + L ++ I+P +E + GN+REL N++E Sbjct: 236 MPSLKERKEDIPLIISHILKELNQKYNKNITRISPQFLEYVNNLELKGNIRELKNIIE 293 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 257 bits (656), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 180/532 (33%), Positives = 270/532 (50%), Gaps = 72/532 (13%) Query: 87 CDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 D +N E + + + L D C ++ +AV R I+++ Sbjct: 69 VDEVQNVGENIIITSRMPLTDECGNILGAVAV------------------FRDITSM--R 108 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 KL E+ I +ID+ + V D+ + VN+ K G+ +IGKP Sbjct: 109 KLAEEITNLHQIEARLKAIIDSTYDAISVADENGYIVLVNKAYTKITGLKPEEVIGKPAT 168 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFH---QSHTSFSVANA 263 ES H + + L +G L R++ + A + S SVA Sbjct: 169 VDIAEGES--IHMKVARTKKPIFNARLKVGPLK----REVIVNAMPLIVRGKFSGSVAVV 222 Query: 264 PDEPHIEQLVGEC----RVMRQLKR--------------LIS-----RIAPSPSSVMVVG 300 D I +L E R +RQLK LI+ ++A +P++V + G Sbjct: 223 HDVSEILELTRELNEVKRYIRQLKAQYTFDDIIGKSEKLLIAKEQAKKVAKTPATVFLRG 282 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE+ A AIH S R+N PF+ +NCAAIPE +LE ELFGY K F G+ GL Sbjct: 283 ESGTGKELFAHAIHNESNRKNNPFVTVNCAAIPENMLEIELFGYTKDTF------GQKGL 336 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 I+ A GTLFLDEIG MP+ +QAK+LR IE RE LPIG++ +V++RII++TN N+ + Sbjct: 337 IEEAEGGTLFLDEIGKMPISVQAKILRFIENREFLPIGSNRVKKVNVRIIASTNMNIEEL 396 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 I + +F DL+YRLNV PI +PPLRER+EDIE L + R+ G I + VE Sbjct: 397 IRKEQFLIDLYYRLNVFPIYIPPLRERKEDIEELAKFLAKKIGRQYGRNVVDITDNAVEY 456 Query: 481 LRKHRWPGNLRELSNLM-EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 L+K+ WPGN+REL N++ ++N+ ++D +P L N + L Sbjct: 457 LKKYDWPGNIRELENIIGRAIINMDIGETILDKRHIPLLFLENNSI------------LK 504 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYELL 590 + + + +E+ E++MI +L +N + + A +L I + TLY K+++Y LL Sbjct: 505 KEGSLRSMVEDFERKMIESSLKENNGDRTLTAKKLKISLRTLYYKMERYGLL 556 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/314 (43%), Positives = 204/314 (64%), Gaps = 14/314 (4%) Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M +L + +IAP+ +V++ GESGTGKE+ AR IH S R+ PF+A+NC A E+LL Sbjct: 148 MLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVNCGAFSEELLS 207 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 +ELFG+ KGAFTGA+A K GLI+ A++G+LFLDEI +M L +QAKLLR I+ RE +G Sbjct: 208 NELFGHEKGAFTGANA-LKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQEREFFRLG 266 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 A+ PI+VD+R I+ATN+++ + + GKFREDL+YRLNV+ I +PPLRER++DI LLV YF Sbjct: 267 ATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDIPLLVAYF 326 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 ++ + G++ + + +L + +PGN+REL N++E V + S + ID LP Sbjct: 327 SKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQ-IDVEHLP-- 383 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADE-LGIGI 577 D+ E+ + + +LEE+EK+ I+ L + K VA + LGI Sbjct: 384 ---------QDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGNNKTVAAQILGIDR 434 Query: 578 ATLYRKIKKYELLN 591 +L+RK+K Y + N Sbjct: 435 VSLWRKLKNYGIEN 448 >UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1K8_9CLOT Length = 637 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/324 (43%), Positives = 200/324 (61%), Gaps = 22/324 (6%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 E +V E +M+ L A + + +++ G SGTGKE++A++IH S R N+PF+A+N Sbjct: 328 FEDIVAESALMKSLMDKARLYASTNAGILINGNSGTGKELLAQSIHNASPRHNQPFVAVN 387 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAAIP LLESELFGY +GAF+GA GK GL + A+ GT+FLDEI MP+ LQ+ LLR Sbjct: 388 CAAIPASLLESELFGYEEGAFSGAKKGGKRGLFELAHKGTIFLDEINSMPIELQSVLLRT 447 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 I+ +EI +GA I VDIRIISA N+N+ + IA+GKFR DL+YRLN + +T+P L R+ Sbjct: 448 IQEKEIRRVGAQKNIYVDIRIISACNKNMEELIADGKFRADLYYRLNTLKLTMPDLETRK 507 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV----- 503 EDI L YFL ++ + P ++P+ EIL K WPGN+REL N M V + Sbjct: 508 EDIPPLCGYFLKRYSAKYSVPIPALSPEDSEILLKRSWPGNVRELENTMHRYVILSSLQH 567 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR- 562 + +D T PP EQ+ + S+ L GT L +ME +IR+ L Sbjct: 568 CSVNDCLDGT--PP--------EQAASSGASQPPLE-----GT-LAQMELALIRKCLEEN 611 Query: 563 HNSKKQVADELGIGIATLYRKIKK 586 H S+++ A +LGI +TL++K+ + Sbjct: 612 HGSREKTAKQLGISRSTLWKKLSQ 635 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 170/472 (36%), Positives = 248/472 (52%), Gaps = 57/472 (12%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFES 214 + + + T+I D V V+D + V+ A K V N IIG+PI RF Sbjct: 10 NELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRF------- 62 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQ-------------------------------- 242 F + ++ + S D + I+ Q H + Sbjct: 63 -FDYKDLEILQSLHD-GKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQV 120 Query: 243 --GRQLFLMAFHQSHTSFSVANAPDE--PHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 +LF M+ VA DE P + + G+ V+++ +L ++ S+V++ Sbjct: 121 ALNEKLFNMSHEMHRLEQEVAKYKDESDPFL-AMNGKSPVIQRTIQLARKVCSVKSTVLI 179 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESG GKEV A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK Sbjct: 180 LGESGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKK 239 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G I+ A GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L Sbjct: 240 GKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQ 299 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + +G FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ Sbjct: 300 EEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIM 359 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 L + WPGN+REL N++E LV G +I LP + TTE D L Sbjct: 360 HELLHYNWPGNIRELRNVVERLVVFATDG-IIKQEYLPFH-----TTETLDNHTAHSLLL 413 Query: 539 SLDDAGGTALEEM---EKQMIREALSRHNSKK-QVADELGIGIATLYRKIKK 586 S ++ + EEM EK++I AL N K + A +LG+ ATLY ++KK Sbjct: 414 SNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKK 465 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/330 (41%), Positives = 203/330 (61%), Gaps = 8/330 (2%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 D P +++++G+ MR +K L+ ++AP S+V++ GESGTGKE+V+ + LSGR PF Sbjct: 137 DSP-VQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELVSDTLRALSGRAGAPF 195 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAAIPE L E+ELFG+ KGAFTGA+ + + G + A+ GTL LDEIGDMP +Q K Sbjct: 196 VKVNCAAIPEHLFENELFGHEKGAFTGAT-SAQPGKFELAHGGTLLLDEIGDMPAAIQPK 254 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLRA+E ++I +G P+ V++RII+ATNQNL + +A FREDL+YRL V I LPPL Sbjct: 255 LLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDLYYRLGVAVIMLPPL 314 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 R+R+EDI L + L LG GI V+ L H WPGN+R+L+NL+E + Sbjct: 315 RDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGNVRQLANLLER-AAIS 373 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE----MEKQMIREAL 560 G + + + NGT+ Q + + +D L E ME+ ++ EAL Sbjct: 374 AQGRITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMPLRETLHQMERNLLLEAL 433 Query: 561 SR-HNSKKQVADELGIGIATLYRKIKKYEL 589 R S+K A LG+ ++ K++K+++ Sbjct: 434 RRAEGSQKNAAALLGLTPKNMWAKLQKHQI 463 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 135/318 (42%), Positives = 204/318 (64%), Gaps = 21/318 (6%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++G C M ++ R + ++A + SV++ GE+GTGKE++AR +H+ S R PF+ INC Sbjct: 331 EIIGACPSMLEVFRKLQKVAATDISVLITGETGTGKELIARELHRRSPRDGGPFVTINCG 390 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE L+ESELFG+VKGAFTGA A+ + G Q A+ GTLFLDEIG++PL LQ KLLRA++ Sbjct: 391 AIPENLIESELFGHVKGAFTGAIAS-RPGKFQIADKGTLFLDEIGELPLNLQVKLLRALQ 449 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 R + +G S P +VDIRI++ATN+NL + I G FREDL+YRLNV+ + LPPLRER +D Sbjct: 450 ERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFREDLYYRLNVVNLWLPPLRERGDD 509 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN-LMEYLVNVVPSGEV 509 + ++ L + LGS G +P + ++K+ WPGN+R+L N + + LV + Sbjct: 510 VLIIAKVLLSKYADELGSAVRGFSPAALSAIKKYPWPGNIRQLENRIKKALV-------L 562 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK-Q 568 D LL L+ G ++ + + +A EE +++ + EAL R+N + Q Sbjct: 563 CDQALLAVEDLDLGPGAETAIMPLEKAK-----------EEFQRRYVLEALERNNGNRTQ 611 Query: 569 VADELGIGIATLYRKIKK 586 A +LG+ T++R ++K Sbjct: 612 TARDLGVDPRTIFRYLEK 629 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/322 (43%), Positives = 204/322 (63%), Gaps = 20/322 (6%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 +++G ++++ +I++IAPS ++V++ GE+GTGKE++A+AIH S R+ KP+I +NCA Sbjct: 201 EIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKLNCA 260 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFG+ KGAFT A K G + A+ GTLFLDE+GD+ L LQAK+LR ++ Sbjct: 261 AIPENLLESELFGHEKGAFTDARETRK-GRFELADGGTLFLDEVGDLSLPLQAKILRILQ 319 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +E +G S I+VD+RI++ATN++L + + G FREDLFYRLNVIPI PPLR+R +D Sbjct: 320 EQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGDD 379 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 + LL YFL +R + P E+L+ + WPGN+REL N +E LV + PS + Sbjct: 380 VILLSRYFLERFCKRHAKEL-HLTPKAEELLKHYDWPGNIRELENSIERLVLLAPSESID 438 Query: 511 DSTLLP--PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKK 567 + +L P ++ T E + LEE+E+ I +AL H K Sbjct: 439 EEVVLSVLPGRVHGYTKEVKTRAD---------------LEELERSAIIKALKECHGIKL 483 Query: 568 QVADELGIGIATLYRKIKKYEL 589 Q A +LGI + KI+KYE+ Sbjct: 484 QAAKKLGITNRQIGYKIQKYEI 505 >UniRef50_C2WFS2 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus RepID=C2WFS2_BACCE Length = 468 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/325 (42%), Positives = 201/325 (61%), Gaps = 17/325 (5%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 E ++G ++ +K ++ + S SS+++ GE+GTGK ++A+ IH+ S + FI INC Sbjct: 153 EYILGNSYTLQNIKEILKNMKSSTSSIVITGETGTGKSLMAKLIHEQSMFQRGDFIEINC 212 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 A+IPE L ESELFGY +GAFTGA GK G + A+ GTLFLDE+ D+P LQ KLL+ + Sbjct: 213 ASIPESLFESELFGYEEGAFTGARKKGKPGYFEMADRGTLFLDEVADLPFHLQPKLLKVL 272 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + + IG + P +V++RII+A+NQ L + I +FR DL+YRLNVIPI LPPLRER+E Sbjct: 273 QDGVVQRIGGTLPKKVNVRIIAASNQPLEKMIDSKQFRPDLYYRLNVIPIHLPPLRERKE 332 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D++ LV + R G + + L+++ WPGN+REL N++EY +N+ SG++ Sbjct: 333 DLQRLVPLLIEKLQTRTGKFIQTFTGEFLARLKQYHWPGNIRELENVLEYSMNMEKSGQL 392 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----S 565 +S+L P L N SE S G AL+E EK+ I + L + Sbjct: 393 TESSL--PVFLQNH----------SEMLRSSPKQHG-ALQEAEKESIIQKLDYYGYDYEG 439 Query: 566 KKQVADELGIGIATLYRKIKKYELL 590 KKQ A LG+ + TLYRK+ K+E+L Sbjct: 440 KKQAAAALGVSVRTLYRKMDKFEIL 464 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 256/490 (52%), Gaps = 67/490 (13%) Query: 149 LEDQGPGDNISKIFATM---IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 L+ +G D +++ + M IDN+D+G+++V+ E +V +N+ ++ + ++ II + I Sbjct: 182 LDKKGIRDILNQTYNYMESVIDNVDKGIMIVNKEYKVININKLGVEIFNIDKDLIISQDI 241 Query: 206 RF--------------------RPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 + + L + H ++ + E IIG + I + Sbjct: 242 HYILPDLGNVIEELENHNDDIIKELKLKHTSRH-KIRLVFKGLKHKENIIGMVVTISYEK 300 Query: 246 LFLMAFHQSHTSFSVANA-PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + + F+ + D I ++ C+V IA SPS+V++ GESGT Sbjct: 301 EGKDNKNATGAFFTFNDIIGDSAAIVNVITNCKV----------IANSPSTVLIQGESGT 350 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE++A+A+H S RR F+AINC AIP ++ESELFGY G FTG G G + A Sbjct: 351 GKEILAQAMHNYSVRRRNKFVAINCGAIPANIIESELFGYEDGTFTGGKRGGNPGKFEIA 410 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDEIG+MP+ Q KLLR ++ + +G S I +D+R+I+ATN+NL + + +G Sbjct: 411 SGGTLFLDEIGEMPIDAQVKLLRVLQNGRVTRLGGSREIPIDVRVIAATNKNLKREVQKG 470 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YRL VIPITLPPLRER+ D+++L+ +FL + + +L P I + L + Sbjct: 471 NFREDLYYRLCVIPITLPPLRERKGDVKMLIDFFLRIKSFQLNKSIPEIDKSLYNKLLDY 530 Query: 485 RWPGNLRELSNLMEYLVNV----------------VPSGEVIDSTLLPPNLLNNGTTEQS 528 WPGN+REL N +E +VN+ + + D +L LN E Sbjct: 531 DWPGNIRELENYIENIVNLDGRSSFNLWEFEDNQSFETDKTYDRKILKDGFLNKEIWEDD 590 Query: 529 DV--------TEVSEAHLSLDDAGGTALEEMEKQMIREA--LSRHNSKKQVADELGIGIA 578 TE +E ++ LEE+E + I EA ++ HN K A LGI Sbjct: 591 QTNGLLKNVNTEKTEYMVNT-----LNLEELEMKAIHEAVRINDHNMTK-AAKTLGISRN 644 Query: 579 TLYRKIKKYE 588 TLY K+KK++ Sbjct: 645 TLYLKLKKHK 654 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/323 (43%), Positives = 199/323 (61%), Gaps = 7/323 (2%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 L+G + LK +A + SSV++ GESGTGKE+ A AIH S R PF+ INC+A Sbjct: 145 LIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGKELFANAIHNSSLREQHPFLPINCSA 204 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE+L ESELFGY +GAFT A GK GL + A+ GT+FLDEIG++PL +Q+KLLR ++ Sbjct: 205 IPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHNGTIFLDEIGELPLSMQSKLLRVLQE 264 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 REI PIGA I +++RII ATN+NL + + G+FREDL+YRLNVI I +PPLR+R+EDI Sbjct: 265 REIQPIGAQKYISINVRIIVATNRNLLKMVENGEFREDLYYRLNVIHIDIPPLRKRKEDI 324 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 + + L + I+ +V++ L H WPGN+REL N++E +N++ ++ Sbjct: 325 KQTAYQLLRKLEHKFYRSDVMISKEVIKQLEMHHWPGNVRELENVLERAINMLKENTILL 384 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM----EKQMIREALSRHNSKK 567 L P + + E+ E +E + + ++E+ EKQ I+ ALS K Sbjct: 385 QHL--PLYIRDIILEERMNIEQTEKNRGNEIVYLKKMKEVIADAEKQAIQNALSHTKGNK 442 Query: 568 -QVADELGIGIATLYRKIKKYEL 589 + A LGIG +LY K +Y + Sbjct: 443 LEAAKLLGIGKTSLYDKCHQYSI 465 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/319 (44%), Positives = 205/319 (64%), Gaps = 15/319 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G VM+ L + ++AP+ +V++ GESGTGKE+VARAIH S RR F+ ++C+A Sbjct: 149 MLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAIHYHSRRRENEFVPVDCSA 208 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 + E LLESELFG+VKG+FTGA K GL + AN GT F DEI ++ + +QAKLLR I+ Sbjct: 209 LVENLLESELFGHVKGSFTGA-LQSKKGLFELANHGTFFFDEISNLSMDIQAKLLRVIQE 267 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 RE +G + I+VD+RI+ A+N++L IAE KFREDLFYRL+VIPI LPPLRER +DI Sbjct: 268 REFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRLHVIPIHLPPLRERGKDI 327 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 E LV+YF+ +R++G P ++ + +++L + WPGN+REL N +E + + D Sbjct: 328 EELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELENTIERTLILKD-----D 382 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVA 570 + + P +L + + D+ S+ +SL D +E+ IR LSR N ++ A Sbjct: 383 AVIKPEHLPQDIRQQPPDLRSFSDKMVSLKD--------LERDYIRFVLSRTNGGIQKAA 434 Query: 571 DELGIGIATLYRKIKKYEL 589 LGI TL K+KKY L Sbjct: 435 GILGINRKTLSMKMKKYGL 453 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/321 (43%), Positives = 207/321 (64%), Gaps = 13/321 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G+ + + + + ++AP+ +SV++ GESGTGKEV A+AIHK SGR F+AINC+A Sbjct: 275 IIGKSQKIIENIAIAKKVAPTSASVLITGESGTGKEVFAKAIHKASGRTGN-FVAINCSA 333 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE L ESELFGYV G FTG+ GK G + AN GTLFLDEIGDMPL +QAKLLR ++ Sbjct: 334 IPENLFESELFGYVGGTFTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQD 393 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + IG+ +V+ RI++ATN++L I E FREDLFYR V+ I LPPLRER++DI Sbjct: 394 GVVYRIGSQKGTKVNCRILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDI 453 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 + + F++ + + G I +V +IL ++W GN+R+L N++E +V + +GEV Sbjct: 454 KDFIDLFINQISEKEGIKINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEVTI 513 Query: 512 STLLPPNLLNNGTTEQSDVTEVS-EAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQV 569 S++ PN + DV E+ E+H D ++ EK++I+E + +KK+ Sbjct: 514 SSV--PNHI------VQDVEEIEGESHHRYD--LNEVVKNTEKKIIKEVMEITKGNKKKA 563 Query: 570 ADELGIGIATLYRKIKKYELL 590 A+ L I +TLY K+ +Y+L+ Sbjct: 564 AEILNIKRSTLYYKLNQYDLI 584 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/356 (41%), Positives = 219/356 (61%), Gaps = 19/356 (5%) Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + ++++ + +N+P + +++GE M+++ R+I R++ S SV++ GESGTGKE+ Sbjct: 119 LNYYRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKEL 178 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 +A A+H+ S + PFIA+N AAIP+ L+ESELFG+ KGAFTGAS + G + A+ G+ Sbjct: 179 IADALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGAS-QVRQGRFEQAHGGS 237 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDMPL +Q +LLR + + +G +PI+VD+RII+AT+Q L Q + EGKFRE Sbjct: 238 LFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFRE 297 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DLF+RLNVI I LPPLRER EDI L YFLH ++LG +AP IL W G Sbjct: 298 DLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSG 357 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG----TTEQSDVTEVSEAHLSLDDAG 544 N+R+L N+ +L V+ S ++I LP +L N + +++ T + L + Sbjct: 358 NVRQLENVCSWLT-VMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWT 416 Query: 545 GTALE------------EMEKQMIREALSRHNSKKQVADE-LGIGIATLYRKIKKY 587 TALE ++E+ M+ AL+ KQ A LG G TL RK+K++ Sbjct: 417 KTALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEF 472 >UniRef50_Q891P7 Transcriptional response regulator n=1 Tax=Clostridium tetani RepID=Q891P7_CLOTE Length = 451 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 200/321 (62%), Gaps = 14/321 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G + M ++ LI R+ +V++ GESGTGKE+VA+AIH R+ PF AINC+A Sbjct: 141 IIGNSKEMNKIFELIDRVKDIDVNVLITGESGTGKELVAKAIHFNGNRKEGPFNAINCSA 200 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP LLESELFG+ KGAFTGA + K G+I+ + GTLFLDEIGDM + LQ KLLR ++ Sbjct: 201 IPSNLLESELFGHKKGAFTGAVED-KKGIIELSQKGTLFLDEIGDMDINLQTKLLRVLQD 259 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 +EI PIG+SS I VD R I+ATN+NL + I + FR+DLFYR+NVI I LPPLR+R++DI Sbjct: 260 KEIRPIGSSSSINVDFRFIAATNKNLIEEIEKNNFRQDLFYRINVINIELPPLRQRKDDI 319 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 L+ YF+ + +L GI D ++ L K+++ GN+REL N++E + V+ I Sbjct: 320 AKLIEYFIKKYKLKLEKDIKGITGDALDSLEKYKYHGNVRELQNIIERAI-VLTEDNYIK 378 Query: 512 STLLPPNLLNNGTT--EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQ 568 LP + N E+ D+ + G + +EK++I L H ++++ Sbjct: 379 KEDLPEEIFQNRNIDREKDDLIPI---------YIGEDFKTIEKKVIEYNLKHFHGNRRK 429 Query: 569 VADELGIGIATLYRKIKKYEL 589 A+ L IG TL KIK Y + Sbjct: 430 TAEILKIGERTLRYKIKGYNI 450 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 150/333 (45%), Positives = 211/333 (63%), Gaps = 19/333 (5%) Query: 262 NAPDEPHIE--QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 N D+P +E L+G R+M + I + A + S+V++ GESGTGKE+VARAIH LS R Sbjct: 101 NFKDKPKVEINGLIGISRIMEDVYCGIRKAALTDSNVLITGESGTGKELVARAIHNLSER 160 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 + PFI INC AIP+ LLESELFG+ KGAFTGA+ K GLI+ A+ GTLF DEIGD+ Sbjct: 161 KENPFIVINCTAIPDTLLESELFGFEKGAFTGANYT-KKGLIEWADRGTLFFDEIGDVSP 219 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 + Q K+LR I+ E + IG + P++VD+R I+ATN++L++ EG FREDLFYRLNVI I Sbjct: 220 LFQTKILRVIQEGEFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHI 279 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSV-YPGIAPDVVEILRKHRWPGNLRELSNLME 498 +PPLR R+EDI L +F+ H+ + + GI + ++ L + +PGN+REL N++E Sbjct: 280 EIPPLRSRKEDIPSLTQFFIKKHSAKRKDINIKGITEEALDALMSYSFPGNVRELENIIE 339 Query: 499 YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIRE 558 + S E+ LP LL T+ S T H +L + A++ EK++I Sbjct: 340 RAIAFTNSVEITIKD-LPAYLLK---TQHSKKT----PHGNLRE----AVDNFEKELIWS 387 Query: 559 AL--SRHNSKKQVADELGIGIATLYRKIKKYEL 589 AL SR N K A+ LGI L RK+K++++ Sbjct: 388 ALQKSRGNISK-AAELLGIHRQQLQRKLKQFKI 419 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 251 FHQSHTSFSVANA------------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 F Q+ S VA A PD ++G+ ++++ ++I ++A +PS+V++ Sbjct: 104 FDQAELSSVVAKAAKTNESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLI 163 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE++A A+H S RR+KPFI INCAAIP LLESELFGY +GAFTGA K Sbjct: 164 TGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGA-VTSKP 222 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A+ GTLFLDEIG++P+ +Q KLLRAI+ E +G +VD+R+++ATN++L Sbjct: 223 GRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQ 282 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 I G+FR+DL+YRL V+PI+LP LRER+ D+ +L +F+ + RRL GIA D + Sbjct: 283 AEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAM 342 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT------- 531 +L+ + WPGN+REL NL+E ++ + G +I + L P + GT Q+ Sbjct: 343 ALLQGYAWPGNIRELENLIERVL-LFADGPLITARDL-PEPVRQGTGVQAGANLASAVAS 400 Query: 532 -EVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 +V + L D E+E+ +I + L + A L I +L K+K++ L Sbjct: 401 IDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGL 460 Query: 590 LNT 592 +T Sbjct: 461 RDT 463 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 251/471 (53%), Gaps = 55/471 (11%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFES 214 +++ + T+I D V V+D++ V+ A K V N IIG+PI RF Sbjct: 94 NDLLAFYNTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRF------- 146 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQ-------------------------------- 242 F + ++ + S D II Q H + Sbjct: 147 -FDYKDLEILQSLHDGKS-IIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQV 204 Query: 243 --GRQLFLMAFHQSHTSFSVANAPD--EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 +LF M+ VA D +P + + G+ V+++ +L ++ S+V++ Sbjct: 205 ALNEKLFNMSHEMHRLEQEVAKYKDTSDPFL-AMNGKSPVIQRTIQLARKVCSVKSTVLI 263 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESG GKEV A+AIH+ S N PFI+INC AIPE L ESELFGY +GAF+GA++ GK Sbjct: 264 LGESGVGKEVFAKAIHEASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKK 323 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G I+ A GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L Sbjct: 324 GKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQ 383 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + +G FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ Sbjct: 384 EEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIM 443 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH- 537 L + WPGN+REL N++E LV G +I LP + + E S +S + Sbjct: 444 HELLHYNWPGNIRELRNVVERLVVFATDG-IIKQEYLPFHTNDTLENETSHSLLLSNNNT 502 Query: 538 -LSLDDAGGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKK 586 LSL + ++E EK++I AL + K + A +LG+ ATLY ++K+ Sbjct: 503 ILSLQE----EMDEHEKKIIERALRILDGNKLECAKQLGVTRATLYNRLKR 549 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/326 (41%), Positives = 208/326 (63%), Gaps = 13/326 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 IE ++GE ++ SR A SP +++++GESGTGKE+ A +IH + R N PF+A+ Sbjct: 398 QIEDILGESVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNIY-RPNGPFMAV 456 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+P +L+ SELFGY G+FTGA GK G I+ A+ GTLFLDEIGDMPL QA LLR Sbjct: 457 NCAALPRELVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPLEHQAILLR 516 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +++ + ++ IG + +VD R+++ATN++L Q + E FREDL+YR++V+ I +PPLRER Sbjct: 517 SLQDKRVMRIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGIFIPPLRER 576 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LL F+ + +R+G P ++P+ +++ +++WPGN+R+L N + + +N + Sbjct: 577 GKDISLLSRLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHHAINTA-ND 635 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT---ALEEMEKQMIREALSRHN 564 VI+ + LP +L+ D T S L G ++ +EK+ I AL R N Sbjct: 636 NVIEPSNLPGYVLD-------DTTSPSSTGLPRFAGAGDHNLCIKTIEKEAIEAALLRAN 688 Query: 565 SKKQVADEL-GIGIATLYRKIKKYEL 589 + A E+ G+ +TLYRK+K Y + Sbjct: 689 NCIPTAAEIVGLSRSTLYRKLKDYNI 714 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/423 (38%), Positives = 232/423 (54%), Gaps = 31/423 (7%) Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNFTHGHMQHIVS 226 M G + +D + +N+ K LG + ++G F + N +MQ S Sbjct: 221 MRDGFIAIDSRGIITEINREGAKLLGRKREELVGHLAADVFDNRRWSFNGKSLYMQSSES 280 Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQ--LVGECRVMRQLKR 284 + S L+ ++ + QG + + ++ AP E ++ VG + + + Sbjct: 281 DNLTSRLV--KVTDEQGAPMGAIGV--------LSPAPREERSQETMWVGRSQATQSVFS 330 Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 + A + S+V++ GESGTGKE+VAR +H+ S R NKPF+AINCAAIP L+ESELFGY Sbjct: 331 RADKAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAIPATLIESELFGY 390 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 GAFTGA G G + A GT+FLDEIGDMP +QA LLR ++ RE++ IG S P Sbjct: 391 ADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQEREVVRIGDSRPRP 450 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 VD+R+++ATN++L+ I +G FR DL+YRL V+ I +PPL R +DI LV YF+ R Sbjct: 451 VDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVKKICR 510 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 G G+ +V E L + WPGN+REL N ME +V + + + LP + N Sbjct: 511 ASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMV-AMAEHSYLTTDDLPAEIAKN-- 567 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRK 583 V+ VS G T LE+ K+ I +AL+ N K A LGIG TLYRK Sbjct: 568 -----VSAVS--------CGETLLEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLYRK 614 Query: 584 IKK 586 I++ Sbjct: 615 IEE 617 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/319 (42%), Positives = 207/319 (64%), Gaps = 14/319 (4%) Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 D ++ VG+ M ++ R I ++AP+ S+V++ GESGTGKE+VARAIHK S RR+ PF Sbjct: 138 DGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAIHKHSQRRDHPF 197 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +A++C ++ E LLESELFG+VKG+FTGA + KTGL + A GTLFLDE+ ++ L QAK Sbjct: 198 VAVDCTSLVENLLESELFGHVKGSFTGA-MHTKTGLFKVAEGGTLFLDEVSNLSLTTQAK 256 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ RE+ PIG + P ++IR+++ATN++L + +AEG FREDLF+RLN+IP+ LPPL Sbjct: 257 LLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRLNIIPMDLPPL 316 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER DI LLV + + +G G+ +++L+ + +PGN+REL N++E V + Sbjct: 317 RERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRELENIIERAVVLA 376 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT-------ALEEMEKQMIR 557 DS + P +L N + + + + LS+++ T A+E++EK + Sbjct: 377 E-----DSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDIEKAFVV 431 Query: 558 EALSRHNSK-KQVADELGI 575 AL R+ + A+E G+ Sbjct: 432 NALQRNRGNITRAAEETGM 450 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 199/319 (62%), Gaps = 15/319 (4%) Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M + L ++AP+ ++V++ GESGTGKE++A AIH+ S R++ P I INC AIPE L E Sbjct: 274 MEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINCGAIPENLAE 333 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SE FGY GAFTGA GK G + A+ GTLFLDEIGD+PL +QAKLLRA++ +G Sbjct: 334 SEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFYRVG 393 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 P+ VD+RII+ATNQNL + + +FREDL+YR+NV + LPPLRE+ EDI L F Sbjct: 394 GIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTEDIMPLTKRF 453 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV----IDSTL 514 + ++ G I V++ L ++ WPGN+REL N++E LV G++ + S L Sbjct: 454 IDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGKISIKALPSYL 513 Query: 515 LP-PNLLNNGTTEQSDVTEVSEAHLSLDD------AGGTALEEMEKQMIREALSRHN-SK 566 P P G+ +Q + E S DD + ++E+E++ I ++L +H+ +K Sbjct: 514 HPGPKF---GSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLKKHSFNK 570 Query: 567 KQVADELGIGIATLYRKIK 585 +VA EL I +TLY ++K Sbjct: 571 AKVARELNIPRSTLYYRMK 589 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/331 (42%), Positives = 204/331 (61%), Gaps = 18/331 (5%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 Q+VG+ M+++ + I +I+ + +V++ GESGTGKE++A+++H+ S R N+PFIAIN A Sbjct: 135 QIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQSVHENSSRSNQPFIAINVA 194 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP +LLESELFG+ KG+FTGA + + G + A GTLFLDEIGDM LQ +LLR + Sbjct: 195 AIPHELLESELFGHEKGSFTGAQSQ-RIGRFEQALGGTLFLDEIGDMHPELQTRLLRVLS 253 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 + E +G PI+ D+RII+ATNQN+ I GKFREDL++RLNV I LPPLR+R+ED Sbjct: 254 SHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHRLNVFRIELPPLRKRKED 313 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV- 509 I LV YFL + S I +E+L ++ WPGN+R+L N Y+ + PS + Sbjct: 314 IPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQLENTCRYITVMAPSTSIT 373 Query: 510 ----------IDSTLLPPNLLN----NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 +D +L PN N NG E+S + ++D + +++EK + Sbjct: 374 LDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMNDLTNLS-KDLEKIL 432 Query: 556 IREALSRHNSKK-QVADELGIGIATLYRKIK 585 ++EAL ++ A LGIG T+ RKIK Sbjct: 433 LQEALKASKGRRIDAAKILGIGRNTITRKIK 463 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 258/448 (57%), Gaps = 19/448 (4%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLT 211 PG + + ++ D + +++ D E + VN A K G+ + ++GK + F+ Sbjct: 6 PGWQRTSVLESVFDQLSDALVLYDPEFCITGVNHAAEKLFGMSSDEMLGKHCQEIFKCSV 65 Query: 212 FESN--FTHGHMQHIVSWDDKSELI----IGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 E N G Q + S + L + +L ++ Q+F A H + ++ + + Sbjct: 66 CEPNCGVLVGLNQPLASANCTVRLHTPNGMERLVVMRTNQMFDDAGHLTGVVATIKDITE 125 Query: 266 E--PHIEQLVGECRVMRQLKRLISRIAPS-PSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 E P +++ E MR++ + R++ S +++++ GE+GTGK++VA+ +H S R+ + Sbjct: 126 EAAPQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKDLVAKTLHYQSVRQAE 185 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PFIAINCAAIPE LLESELFGY KGAFT A A K G+ + A+ GTLFLDEIG++PLMLQ Sbjct: 186 PFIAINCAAIPETLLESELFGYEKGAFTDARAQ-KRGIFELADKGTLFLDEIGEIPLMLQ 244 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR +E + +G I +D+R+I+ATN+NL + + EG FR+DL++RLNVI I +P Sbjct: 245 AKLLRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQDLYFRLNVIQILIP 304 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER EDI + +F+ + R+ G+ ++L H WPGN+REL N +E + Sbjct: 305 PLRERPEDIVPMTKFFIEHYNRKFKRQIEGVTDSAAKLLMAHDWPGNVRELRNAIERSM- 363 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 ++ G I + LP ++ + ++ + + A + L G +LE+ E+ ++ AL + Sbjct: 364 ILEEGAYITAASLPISI----SRPENGLPLGNAAGMEL-PTDGLSLEDNERSLLVRALEK 418 Query: 563 -HNSKKQVADELGIGIATLYRKIKKYEL 589 ++ Q A L I TL K+KK+ L Sbjct: 419 TEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 144/316 (45%), Positives = 200/316 (63%), Gaps = 5/316 (1%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSP-SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + +V + MR + L SR+A SP ++V + GESGTGKEV+ARAIH SG F+A+ Sbjct: 149 FQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLARAIHFASGCLPSNFVAV 208 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE LLESELFG+V+GAFTGA + + G A GT+ LDEIGDMPL LQAKLLR Sbjct: 209 NCAAIPEALLESELFGHVRGAFTGAERD-REGKFSLARGGTVLLDEIGDMPLPLQAKLLR 267 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +E R +G + P VD R+I AT ++LAQ + +G+FREDL++R+NV+PI +PPLRER Sbjct: 268 VLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLYHRINVVPIAIPPLRER 327 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 EDI LLV +FL L + G PG++ +++L H WPGN+REL N++EY +V S Sbjct: 328 LEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPGNVRELRNVLEYAAIMV-SD 386 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSK 566 E+I L + + + + E H+SL A +L+ + +++ AL R H +K Sbjct: 387 ELIRPEHLRLSSSSPSASALPSSSGTVEFHISL-PAEDVSLDAVVSRVLESALQRCHGNK 445 Query: 567 KQVADELGIGIATLYR 582 + A L + YR Sbjct: 446 SRAAALLKVNRKMFYR 461 >UniRef50_C9NV48 Sigma-54 dependent transcriptional regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NV48_9VIBR Length = 545 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 144/342 (42%), Positives = 215/342 (62%), Gaps = 23/342 (6%) Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + H + + E M ++ R + ++ P V++ GE+G GKEV+A+ IH+ S R ++P I Sbjct: 205 QSHYKGPIAESEQMLEVLRRLEKVLTLPVDVLLRGETGAGKEVIAKYIHENSNRADQPLI 264 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 NCAAIPEQLLESELFG+ KG+FTGA + K GL +AA+ GTLFLDEIGDMPL+LQAKL Sbjct: 265 VQNCAAIPEQLLESELFGHKKGSFTGADKD-KIGLFEAAHGGTLFLDEIGDMPLLLQAKL 323 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ R++ P+GAS ++VD+R+++AT+ +L I G+FR DLFYRLNV PITLPPLR Sbjct: 324 LRVLQERKVRPVGASKEVEVDVRVVAATHCHLMDKIKNGEFRADLFYRLNVFPITLPPLR 383 Query: 446 ERQEDIELLVHYFLHLHTRRLG-SVYPGIAPDVVEILRKHRWPGNLRELSNLMEY----- 499 ER+ DI L +F+ LG S PG + +V + L+++ +PGN+REL N++E Sbjct: 384 EREADILPLAEHFVKQSASNLGLSQAPGFSANVQKQLQEYSYPGNVRELKNIVERALLLS 443 Query: 500 ---LVNVVPSGEVI------DSTLLPPNLLNNGTTE--QSDVTEVSEAHLSLDDAGGTAL 548 ++ + GE +T ++ E Q D E ++ L +A G Sbjct: 444 DFETISQIEFGEAAALAEAHQTTPAMVEVMQQPVVESVQQDAAEQADYSRGLKEAVG--- 500 Query: 549 EEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 E EK +I + L+ N + K+ A++L + ++TL K+KKY++ Sbjct: 501 -EYEKTVILDCLNASNWQIKRAAEQLSLPVSTLSHKMKKYDI 541 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 144/322 (44%), Positives = 202/322 (62%), Gaps = 13/322 (4%) Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 E VG+ ++++ LI ++A + S+V++ GESGTGKE++ARAIH S RR+ P + IN Sbjct: 145 FENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIIN 204 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 C AIPE+LLESELFG+ KGAFTGA + G + AN GT+FLDEIGDM LQ KLLR Sbjct: 205 CGAIPEELLESELFGHEKGAFTGAHKT-RIGRFEVANGGTIFLDEIGDMSPNLQVKLLRV 263 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 I+ + IG++ + VDIRI++ATN++L + + + +FREDL+YRLNVIPI +PPLR+R+ Sbjct: 264 IQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRK 323 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 DI LL+ +F++ I+ + L H WPGN+REL N++E ++ ++ SG+ Sbjct: 324 SDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELENVVERVL-ILSSGD 382 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---GTALEEMEKQMIREALSRHNS 565 ID LP +L + E EA L L G A+EE EK +I +AL N Sbjct: 383 TIDKEDLPATILGLDSKE-------PEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANW 435 Query: 566 -KKQVADELGIGIATLYRKIKK 586 K Q A L I TL K+K+ Sbjct: 436 VKTQAAKLLHINRTTLVEKMKR 457 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/322 (42%), Positives = 205/322 (63%), Gaps = 18/322 (5%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++++G M+++ +LI + AP+ V+++GE+GTGKE+ ARAIH+ S R +KPF+ +NC Sbjct: 129 KEMIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTARAIHERSNRADKPFVVVNC 188 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP LLE+ELFGY KGAFTGA + G I+ AN GTLFLDEIGDMP LQ+K+LR + Sbjct: 189 AAIPHDLLEAELFGYEKGAFTGADKK-RIGKIEYANGGTLFLDEIGDMPYDLQSKILRFL 247 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + IG++ D+RII+ATN +L Q + EGKFR DL+YRL+V+ I LPPLR+R E Sbjct: 248 QEYTFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDRGE 307 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D ++ YF+ +++ LG G+ D +E++R H WPGN+REL N + V V+ E Sbjct: 308 DPVIMAKYFVERYSKELGKNIKGLTADALEVIRDHPWPGNVRELINTIRKAV-VLTDKEF 366 Query: 510 IDSTLLPPNLLNN--GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA--LSRHNS 565 ID L + N G+ D+ + +E++E+++++EA L++ N Sbjct: 367 IDVEDLDLKVKCNPQGSGNGEDILNLKR-----------NIEDLERRLLKEAFILAKGNI 415 Query: 566 KKQVADELGIGIATLYRKIKKY 587 K VA LGI +Y+ ++K+ Sbjct: 416 SK-VAKMLGISRPKVYKLMEKH 436 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 173/492 (35%), Positives = 245/492 (49%), Gaps = 79/492 (16%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------FRPLTFESN--- 215 +++++ G+ VVD E V +VN + + + ++IG+ +R R E+ Sbjct: 262 VLESVQDGICVVDREGCVTYVNPAYARIVNGRREDLIGRDVRNLSPRGARRQALETGKPV 321 Query: 216 --------------------FTHGHMQHIVSWDDKSELIIGQLHNIQ--GRQLFLMAFHQ 253 G + +VS I+ L ++Q +L MA Sbjct: 322 LGHLAQKDGDVTVIADAYPIIVDGEVTGVVS-------IVKTLTDVQTLAEKLNRMAARA 374 Query: 254 SHTSFSVANAPDEP--HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + A +P + +G+ +R + + A P++V++ GESGTGKE+VA Sbjct: 375 EYLEQELRRA-KKPGGAFARFIGQSGKVRDALAMAEKAAEGPATVLIRGESGTGKELVAE 433 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH+ R PFI +NCAAIPE LLESELFG+ KGAFTGA K G + A+ GTLFL Sbjct: 434 GIHESGPRSKGPFIRVNCAAIPETLLESELFGHEKGAFTGAIKR-KLGKFELAHKGTLFL 492 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG++ +QAKLLR ++ +EI IG VD++II+ATNQ+L + +AEG+FREDL+ Sbjct: 493 DEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDVKIIAATNQDLERLVAEGRFREDLY 552 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNVIPI LPPLRER+EDI LLV +FL R G GI D +E L + WPGN+R Sbjct: 553 YRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQGKALRGIHSDALEALMHYSWPGNVR 612 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE---------------- 535 EL+NL+E +V + + DS LP L E + + E Sbjct: 613 ELANLIERVVTLSDGPWITDSD-LPTYLRERAAEENHEGRPLEERPAGGRYGAGERGYNG 671 Query: 536 -AHLSLDDAGGTA-------------------LEEMEKQMIREALSRHNSKKQVADELGI 575 H GG + E E+Q+I AL RH S A LG+ Sbjct: 672 REHKIGRSVGGISGSLFRENRWEEQGDAPLLTWEAYEQQIITLALRRHGSFNAAAKALGL 731 Query: 576 GIATLYRKIKKY 587 T+ K +KY Sbjct: 732 THKTVAAKARKY 743 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 138/324 (42%), Positives = 206/324 (63%), Gaps = 12/324 (3%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E ++GE M+ + + ++ + ++V + GE+GTGKE++A AIH S RR+K F+A Sbjct: 371 RFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDKMFVAQ 430 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+PE LLESELFG+ KGAFT A + K GL + A+ GTLFLDEIG+MPL LQAK+LR Sbjct: 431 NCAALPENLLESELFGHKKGAFTSADTD-KKGLFEIADGGTLFLDEIGEMPLSLQAKVLR 489 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ I P+G++ QVD RII ATN++LA + +G FR+DL+YRL V PI LPPLRER Sbjct: 490 VLQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPPLRER 549 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI L +FL ++R G + + ++++ ++WPGN+REL N ++ LV +G Sbjct: 550 REDIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTYQWPGNIRELENEVQRLVIQTDAG 609 Query: 508 EVIDSTLLPPNLLN-NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NS 565 I+ + L P L GT + ++ +L +E++E+ ++ EAL H N+ Sbjct: 610 SWIEVSELSPRLRKVEGT-----LARIAPKKGTLK----AMMEQVERWLLAEALREHDNN 660 Query: 566 KKQVADELGIGIATLYRKIKKYEL 589 K + A LGI L++K+ KY + Sbjct: 661 KTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 141/319 (44%), Positives = 208/319 (65%), Gaps = 13/319 (4%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G M+++ ++++I+ + ++V++ GESGTGKE++A+ IH S R++ P + +N AA Sbjct: 146 IIGNSASMQKVLTMVNQISGTNATVLITGESGTGKELIAKTIHNNSLRKHNPLVILNSAA 205 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE +LESELFG+ KG+FTGA K G + A+ GT FLDEIGDMPL QAKLLR +E Sbjct: 206 IPENILESELFGHEKGSFTGALYQRK-GKFEYAHRGTFFLDEIGDMPLSAQAKLLRVLED 264 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 I IG++ I+VD+R+I+ATNQ L I EGKFREDL++RLNVI I LPPLRER EDI Sbjct: 265 GMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFREDLYFRLNVIRIKLPPLRERLEDI 324 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL+ F+ +R I P+ +IL +++WPGN+REL N +E +V V+ + + +D Sbjct: 325 PLLLDAFIREFSRLYSKEILQITPEARKILLRYQWPGNIRELKNCIESMV-VITTKKYLD 383 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVA 570 LP ++ ++SD VS ++ G +E+ E ++I+ L S ++++ A Sbjct: 384 VEDLPDHI-----EKKSDEMPVSHGLMA-----GMTMEDAEIELIKCTLASVGGNREEAA 433 Query: 571 DELGIGIATLYRKIKKYEL 589 LGIG TLYRK+ Y L Sbjct: 434 RMLGIGERTLYRKLDLYRL 452 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/331 (42%), Positives = 203/331 (61%), Gaps = 18/331 (5%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 LVG ++ R+AP+P++V+ GESG GKE+ AR++H+ S R +PF+AINCAA Sbjct: 268 LVGASSAFNAAFHMVRRVAPTPATVLFTGESGVGKEMFARSLHRNSDRAARPFVAINCAA 327 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE L+ESELFG +GAFTGA A+ + G + A+ GTLFLDEIG + L+ Q KLLRA++ Sbjct: 328 IPETLIESELFGVERGAFTGAGAS-RPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQE 386 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 EI +G + ++V++R+++ATN++L + + +G FREDLFYRLNV PI LPPLRER++DI Sbjct: 387 GEIERVGGTKTVKVNVRVVAATNEHLREAVRKGSFREDLFYRLNVFPIHLPPLRERRDDI 446 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL+ +FL+ + R PG + V+ L + +PGN+REL NL+E V +V GE+ID Sbjct: 447 PLLMQHFLNHYRERYQREVPGFSQRAVKALFNYGFPGNIRELQNLIERAVIMVNDGELID 506 Query: 512 --------------STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 LP + + TE S +H+SL G L E++ I Sbjct: 507 VHQLFRGGEELSEGVLSLPASAAGDAGGRLVGGTESSSSHVSLTP--GQTLGGAEQEWIA 564 Query: 558 EALSRHNSK-KQVADELGIGIATLYRKIKKY 587 AL R A +LGI ATL + K++ Sbjct: 565 AALRRSAGNIAAAARQLGITRATLLYRAKQH 595 >UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4D6_MAGSM Length = 353 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/342 (41%), Positives = 202/342 (59%), Gaps = 27/342 (7%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G MR+L +LI R+A + S+V++ GESGTGKE++ RAIH S R N P IA+NC A Sbjct: 4 IIGSAPAMRKLFKLIERVAAADSTVLIHGESGTGKELICRAIHNTSPRHNGPLIAVNCGA 63 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFG+ KG+FTGA + G AN GT+FLDEIGDM LQ K+LR ++ Sbjct: 64 IPEDLLESELFGHAKGSFTGA-VRDRPGKFVTANNGTIFLDEIGDMSPKLQVKMLRVLQE 122 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 R + P+GA ++V++R+I+AT++NL++ + EG+FREDLFYRLNV+PI +PPLR+R ED+ Sbjct: 123 RIVEPVGALRSVEVNVRVIAATHKNLSKEVEEGRFREDLFYRLNVVPIQVPPLRDRIEDV 182 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LV +F+ R I V+ I +++ W GN+REL NLME L+ + +D Sbjct: 183 SSLVEHFMEKCAARSNCPPVKIGAQVMSIFQRYSWKGNVRELENLMERLIVLADDEVTLD 242 Query: 512 STLLPPNLLNNGTTEQSDVTE------------------VSEAHLSLDDAGGTA-----L 548 LP N+L+ + E + + LDD + Sbjct: 243 D--LPENMLDTSNHTEPRAQEERIPVQAFRVAYNDDDEDEGDGEMVLDDRESVTDFNHQV 300 Query: 549 EEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 E+ E Q+I AL+R +K + A L + TL KIKK L Sbjct: 301 EQYENQLILNALNRTGWNKNKAAQLLKLNRTTLVEKIKKKGL 342 >UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and AAA domains) n=1 Tax=Clostridium acetobutylicum RepID=Q97LU5_CLOAB Length = 627 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 140/317 (44%), Positives = 203/317 (64%), Gaps = 7/317 (2%) Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + + ++ + + M +LK+L + + SS+++ GESG+GKE+ A++IH S R+N PF+AI Sbjct: 316 NFDDILTQDKNMIELKKLALLYSKTDSSILIQGESGSGKELFAQSIHNSSPRKNGPFVAI 375 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+PE LLESELFGY G+FTGA GK GL + A+ GT+FLDEIG++ LQA+LLR Sbjct: 376 NCAALPEHLLESELFGYEGGSFTGAKKEGKQGLFELAHNGTIFLDEIGELSKPLQAQLLR 435 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +E +EI+ IG I VDIRIIS+TN+NL I G FREDL+YRLNV +TLPPLRER Sbjct: 436 VLEEKEIMHIGGDKIIPVDIRIISSTNRNLLNSIENGTFREDLYYRLNVFNLTLPPLRER 495 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DIE+L +FL +T S I + L + WPGN RELSN+ME + + + Sbjct: 496 GKDIEILAEHFLE-NTHNFSSNRSKILNQITPFLMAYNWPGNTRELSNVMERISLFIENS 554 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 I+ + + +++ E + +V +L++ + +E EK++I L R+ N Sbjct: 555 MTINWSQVLYKVVHKEKIEDTLTLKVP-YNLTMKE----IIELTEKRVIHSLLERYDNDH 609 Query: 567 KQVADELGIGIATLYRK 583 +VA+ L IG TL+RK Sbjct: 610 NRVAEILNIGRTTLWRK 626 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 207/317 (65%), Gaps = 8/317 (2%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++V E ++ +L +RIA ++++++GE+G GK+ +A+ IHK+S R K FI +NC Sbjct: 277 EIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKYIHKVSKRSKKQFIKVNCG 336 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 A+P L+ESE FGY KGAFTGA+ GK GL + A+ GT+FLDE+G++P+ +Q KLLR ++ Sbjct: 337 AVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLDEVGELPMDMQVKLLRVLQ 396 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 E++ IG + PI++D+R+++ATN++L I + +FREDL+YRLNVIP+ +PPLRER+ D Sbjct: 397 EMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYYRLNVIPLYIPPLRERKHD 456 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L+++FL ++ + A D + + ++ WPGN+REL N++E V ++ + I Sbjct: 457 ILPLINFFLTQLNKKY-NFNKIFASDALNCMYEYNWPGNVRELKNIVERAV-IMSEDDKI 514 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 + LP N++ G+ E ++L + L+ +EK++I++A ++ + + A Sbjct: 515 KRSDLPKNII--GSNGMIVTLNTFEEGINLKE----TLDAIEKKLIKKAYDKYGNVRAAA 568 Query: 571 DELGIGIATLYRKIKKY 587 LGI +T RK +KY Sbjct: 569 KSLGIDASTFVRKRQKY 585 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 233/438 (53%), Gaps = 38/438 (8%) Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE----------SNFTHGHM 221 G++V+D ++ VN TA L + Q ++IG + + FE S H M Sbjct: 264 GMMVLDPNGIIKTVNPTAAVLLNMSQESLIGCSAQ---ICFEIETALERLKKSPEIHATM 320 Query: 222 QHIVSWDDKSE-----LIIGQLHNIQGRQLFLMAFHQS--HTSFSVANAPDEPHIEQLVG 274 V W ++ I + G L ++ Q+ H + + +P ++G Sbjct: 321 GVTVKWKQRASANARVYPITTPNGSLGCLLLVLYESQNRPHMALPMETKTHDP-FNAVIG 379 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 + ++AP +S+++ GESGTGKE++A+A+H+ S R KPF+AINC AIP Sbjct: 380 VSSAILSAVETAKQVAPQMTSILITGESGTGKEIMAKALHRASPRAQKPFVAINCGAIPH 439 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 +L++SELFGY +GAFTGA+ G G + AN GTLFLDEI +MPL LQ LLR +E + Sbjct: 440 ELIQSELFGYAQGAFTGANRGGNPGKFEQANEGTLFLDEIAEMPLDLQVNLLRVLEENSV 499 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 +G + PI VD+RI+SAT++NL + I + FREDL+YRL V+ I LPPLR+R D++LL Sbjct: 500 TRVGGNHPIPVDVRILSATSKNLKELILQKTFREDLYYRLKVVKIDLPPLRQRGRDMDLL 559 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTL 514 +F++ ++ L + P L H WPGN+REL + +E + ++ + L Sbjct: 560 AEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGNVRELKHAIEGAIALMSGDTLFGDAL 619 Query: 515 L--PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVAD 571 P NL E LS+ D L +EK+ I+ A +R + A Sbjct: 620 CDSPGNL--------------QETALSVPDKERLNLMRVEKETIQLAYARFSGNISHTAK 665 Query: 572 ELGIGIATLYRKIKKYEL 589 LGIG TLY K+ KY++ Sbjct: 666 ALGIGRNTLYAKLLKYKI 683 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 888 0.0 UniRef50_B0TS74 Putative sigma54 specific transcriptional regula... 716 0.0 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 689 0.0 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 686 0.0 UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis ... 681 0.0 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 679 0.0 UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=1... 672 0.0 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 670 0.0 UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis ... 670 0.0 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 666 0.0 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 659 0.0 UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-c... 659 0.0 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 654 0.0 UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional ... 651 0.0 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 651 0.0 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 645 0.0 UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium ... 643 0.0 UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Des... 643 0.0 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 639 0.0 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 639 0.0 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 634 e-180 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 629 e-179 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 620 e-176 UniRef50_C5EGG3 Signal-transduction and transcriptional-control ... 602 e-170 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 576 e-163 UniRef50_UPI000197326E probable transcriptional regulator n=1 Ta... 573 e-162 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 550 e-155 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 544 e-153 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 539 e-151 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 538 e-151 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 537 e-151 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 537 e-151 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 537 e-151 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 535 e-150 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 535 e-150 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 534 e-150 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 533 e-150 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 533 e-149 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 530 e-149 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 530 e-149 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 529 e-149 UniRef50_P26047 Signal-transduction and transcriptional-control ... 528 e-148 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 528 e-148 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 526 e-148 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 526 e-148 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 526 e-148 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 526 e-147 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 525 e-147 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 524 e-147 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 524 e-147 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 524 e-147 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 523 e-147 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 521 e-146 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 521 e-146 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 521 e-146 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 520 e-146 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 520 e-146 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 519 e-145 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 519 e-145 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 518 e-145 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 517 e-145 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 517 e-145 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 516 e-145 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 515 e-144 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 515 e-144 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 514 e-144 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 513 e-144 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 513 e-144 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 513 e-143 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 512 e-143 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 511 e-143 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 510 e-143 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 510 e-143 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 510 e-143 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 510 e-143 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 509 e-142 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 509 e-142 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 507 e-142 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 506 e-142 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 506 e-142 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 505 e-141 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 505 e-141 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 505 e-141 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 505 e-141 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 503 e-141 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 503 e-141 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 503 e-140 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 502 e-140 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 501 e-140 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 501 e-140 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 501 e-140 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearot... 500 e-140 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 500 e-140 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 500 e-140 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 500 e-140 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 500 e-140 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 499 e-139 UniRef50_Q3A203 Two component signal transduction response regul... 499 e-139 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 498 e-139 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 498 e-139 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 498 e-139 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 497 e-139 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 497 e-139 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 497 e-139 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 497 e-139 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 497 e-139 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 496 e-139 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 496 e-139 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 496 e-139 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 496 e-138 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 496 e-138 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 496 e-138 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 495 e-138 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 495 e-138 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 494 e-138 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 493 e-138 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 493 e-137 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 493 e-137 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 493 e-137 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 493 e-137 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 493 e-137 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 493 e-137 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 492 e-137 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 491 e-137 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 491 e-137 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 491 e-137 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 491 e-137 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 491 e-137 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 490 e-137 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 490 e-137 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 490 e-137 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 490 e-137 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 490 e-136 UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with ... 489 e-136 UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Des... 489 e-136 UniRef50_B6WWU2 Putative uncharacterized protein n=1 Tax=Desulfo... 489 e-136 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 489 e-136 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 489 e-136 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 489 e-136 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 488 e-136 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 488 e-136 UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostri... 488 e-136 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 487 e-136 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 487 e-136 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 486 e-136 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 486 e-136 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 486 e-136 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 486 e-135 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 486 e-135 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 486 e-135 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 486 e-135 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 485 e-135 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis ... 485 e-135 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 485 e-135 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 485 e-135 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 484 e-135 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 484 e-135 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 484 e-135 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 484 e-135 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 484 e-135 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 484 e-135 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 484 e-135 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 484 e-135 UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with ... 484 e-135 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 483 e-135 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 483 e-135 UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID... 483 e-135 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 483 e-134 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 483 e-134 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 483 e-134 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 483 e-134 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 483 e-134 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 482 e-134 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillu... 482 e-134 UniRef50_Q6ARB9 Probable two-component system response regulator... 481 e-134 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 481 e-134 UniRef50_C6BSU4 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 481 e-134 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 481 e-134 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 481 e-134 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 481 e-134 UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1... 481 e-134 Sequences not found previously or not previously below threshold: UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 516 e-144 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 510 e-143 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 505 e-141 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 491 e-137 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 491 e-137 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 491 e-137 UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-bindi... 490 e-137 UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional r... 490 e-137 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 488 e-136 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 487 e-136 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 487 e-136 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 486 e-135 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 485 e-135 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 484 e-135 UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis... 482 e-134 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 482 e-134 UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5... 481 e-134 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 481 e-134 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional r... 481 e-134 >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 592/592 (100%), Positives = 592/592 (100%) Query: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS Sbjct: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 Query: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH Sbjct: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN Sbjct: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN Sbjct: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 Query: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG Sbjct: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL Sbjct: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF Sbjct: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI Sbjct: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL Sbjct: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT Sbjct: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 >UniRef50_B0TS74 Putative sigma54 specific transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=B0TS74_SHEHH Length = 555 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 299/563 (53%), Positives = 403/563 (71%), Gaps = 10/563 (1%) Query: 27 VLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEG 86 +LQL+ E+VD +L R+AGTG Y K LG++L+ +SR+ R+++ETK KVV ++R DP+CEG Sbjct: 1 MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEG 60 Query: 87 CDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 C + +NCRE AFLG P++L DRC+GV+SL+A E + I +N++ F DY+ HIS + V Sbjct: 61 CSNHDNCRETAFLGVPIMLDDRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVI 120 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 K+ E + G N+ ++F+ +I+NMDQGVLV+DD NRV N AL L + + + + Sbjct: 121 KVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGNPQALDILNISHSELALIEVN 180 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 +PL +N G QHIV+ + EL++GQ H I +QLFLM+FHQ +TS + + P Sbjct: 181 IQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS 240 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P ++GE M QLK LI+R+A SPSS+++ GESGTGKEV A+AIHK S R + F+A Sbjct: 241 P-FSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVA 299 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIPEQLLESELFGYVKGAFTGA GK GLIQAAN GTLFLDEIGDM + LQ+KLL Sbjct: 300 INCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLL 359 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E RE++P+G+++ V+IRIISATN+N A+ IA +FREDL+YRLNVIP+ LP LRE Sbjct: 360 RVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRE 419 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+ DIELLV+YFL H++ +G+ YPGI +V+ L + WPGN+RELSNL+EYLVN+VPS Sbjct: 420 REGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPS 479 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G+ ID LLPP D + S + + +LEEME+ I ++++R ++ Sbjct: 480 GDQIDIDLLPPYF---------DTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNR 530 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 K VA ELGIG+ATLYRK+KKY L Sbjct: 531 KLVAKELGIGVATLYRKLKKYRL 553 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 220/597 (36%), Positives = 338/597 (56%), Gaps = 28/597 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 SVL IQ I +A ++ + +VEI+DE+L R+AGTG Y L ++ N + RH Sbjct: 1 MISVLSNIQDDICNYADAISGITGTDVEIIDESLMRIAGTGKYRHMLNENVAKNGYIYRH 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VL+ + ++ PLC+ C+ C E L P+ L +R +GVI +I T Q++ Sbjct: 61 VLQVRETVLIKNPGEHPLCQLCEKHHYCSEMLDLNAPIFLNNRVIGVIGIICSTQAQRDT 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + + +F ++ I+ + SK+ E ++ F +ID MD+GV+ +D + + Sbjct: 121 LLSQIDKFVTFIEQIAVMISSKVFECLERLRAQETLGAFRRLIDAMDRGVVAIDGKGLIW 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFE--SNFTHGHMQHIVSWDDKSELIIGQLHNI 241 N +A + L + ++ PLT E + +G + ++ + + ++ + ++ Sbjct: 181 HANHSADRILN--------REVQGLPLTIETTGDSLYGDEEAWLTLEGQKHHVLCKQISL 232 Query: 242 QGR---QLFLMAFHQSHTSFS-VANAPDEPHIE-QLVGECRVMRQLKRLISRIAPSPSSV 296 + +L ++ F +H S + +P E ++ +L+G M QL+ I +IA S +SV Sbjct: 233 SSQDNDRLTMIIFRDAHDYLSNLTPSPYESDMQVRLIGHSPSMEQLRSTIGKIANSYASV 292 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESG+GKEVVA AIH+ S R+ PF+ INCAAIPEQLLESELFGYV+GAF+GA G Sbjct: 293 LITGESGSGKEVVAFAIHQSSPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGADPKG 352 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 + G + AN G+LFLDEIGDMPL LQAKLLR ++ + I +G+++ I +D+RII+ATN+N Sbjct: 353 RMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAATNKN 412 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 + + +FREDLFYRLNV+P+ LP LRER+ DI +L YF + + D Sbjct: 413 INAMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQKLPDD 472 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V+ L WPGN+REL N++EY+ + I+++ LPP LL ++ +T Sbjct: 473 VINRLYAWHWPGNIRELRNVIEYIFVMRGEAAGINASHLPPYLLTAADGRKTTMTAQPRQ 532 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 S ++ E++ I + R KKQ A ELGI IATLYRKIK Y L Sbjct: 533 LASKG-------KQAEREAIENVIQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 216/599 (36%), Positives = 338/599 (56%), Gaps = 32/599 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L +I ++Q + +ASV+ ++V IVD +L R+AGTG Y + +G ++ NS VL Sbjct: 3 LRKIVSSVQNVSEAIASVINVDVTIVDHHLNRIAGTGCYKEQVGEKVDENS-AFGFVLRQ 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 ++ R +C C++ NC E A + P+ ++D+ VGVI LIA EQ+ + N Sbjct: 62 GESLIIENPRQHDICLQCENVGNCMEYAEVCCPIKVKDQIVGVIGLIAFEEEQKTAMIGN 121 Query: 130 LREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + +++ ++ + SK++E + + K T++D++D+G++ VD ++ N+ Sbjct: 122 QKNLMEFLNKMADLISSKVIEQESTDQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYNK 181 Query: 188 TALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVS----WDDKSELIIGQLHNI-- 241 A+ + +N + + I+ F+ N + + + + K + G Sbjct: 182 RAIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPI 241 Query: 242 -QGRQLFLMAFHQSHTSFSVANAPDEP------HIEQLVGECRVMRQLKRLISRIAPSPS 294 G + F + F S+ S + D + ++GE ++ ++K + A S S Sbjct: 242 RIGSENFGIVFTFSNISDVLGIINDMTTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSSS 301 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ ARAIH S R KPFI INCAAIPEQLLESELFGY +GAFTGA Sbjct: 302 TVLIQGESGTGKELFARAIHFHSQRCKKPFIPINCAAIPEQLLESELFGYEEGAFTGAKR 361 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK+G + AN GT+FLDEIGDMPL LQ KLLR ++ + I +G I +D RII+ATN Sbjct: 362 GGKSGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATN 421 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++L + EG+FR+DLFYR+NVIP+ +PPLR+R ED+ +LV Y L+ +LG + Sbjct: 422 KDLENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVH 481 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 P V ++ ++WPGN+REL N +EY VN+ SG +I LP L T + + Sbjct: 482 PGVFDVFMSYQWPGNVRELENTIEYAVNMC-SGSIIMERDLPKRLSRRQTESKDESFR-- 538 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYEL 589 G T+++E+E++ + +A++ + KQ A LGIG ATLYRK+K Y + Sbjct: 539 ---------GITSIQELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLKIYGI 588 >UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Peptococcaceae RepID=A4J154_DESRM Length = 593 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 208/596 (34%), Positives = 333/596 (55%), Gaps = 19/596 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +L++IQ T++++A ++A + +VE+VD +L RVAGTG + F+ +S R Sbjct: 1 MAGILLEIQETVEKYASIMAKISNFDVEVVDADLFRVAGTGIFAPFVNMDMSAEGYAYRQ 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VL+T +++ DP+C+ C + NC E+ + P++ + + +GVI L+ + + Sbjct: 61 VLKTGKLQIIYTPGRDPICQDCPKRHNCTEEIEIAMPILARGKTIGVIGLVGSSEWHRNT 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I + + + I+ +K E DQ +++ + ID+M+QG+L++ + + Sbjct: 121 ILQDEGTYLGLIEQIANFIAAKATERIDQKKQESMLSALSCTIDHMEQGILILGSDRTIT 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH---N 240 N A K L + + G ++ P + +G ++++S +K I+G+++ Sbjct: 181 LANYEARKQLKL--EILEGSQVKLTP---TRDKINGQSEYLLSVAEKKTYILGEIYIPFK 235 Query: 241 IQGRQLFLMAFHQSHTSFSVANA-PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + ++ F +S A ++G L+ I ++A S S+V++ Sbjct: 236 VDESYAEVLVFTRSKNLHQKMYALTAAISTGNIIGSSEETAALRMEIEKVANSASTVLIT 295 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKEV A AI + RR++ F+A+NCAAIPE LLESELFGYVKGAFTGA NG+ G Sbjct: 296 GESGTGKEVAATAIWRAGNRRDQQFVALNCAAIPESLLESELFGYVKGAFTGADPNGRIG 355 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G +FLDEIGDMPL LQAKLLR ++ R+I+ IG++ I VD+R+I+ATN++L Sbjct: 356 KFELANHGIVFLDEIGDMPLYLQAKLLRILQDRKIVRIGSNQLIPVDVRVIAATNKDLKS 415 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 IA+GKFREDL+YRLNVIP+ + PLR+RQ+DI L + F + R G I P ++ Sbjct: 416 MIADGKFREDLYYRLNVIPLNILPLRQRQKDIPDLANLFAQRYATRFGKSQCRIPPQTMD 475 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS----DVTEVSE 535 L H W GN+REL N +E++VN+ ++D LP + L + Sbjct: 476 ALLAHPWYGNVRELENTIEFMVNMSDEEGILDLDTLPRDFLEHQRRAAYKHDWSANPAEG 535 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKY 587 + D L+E+E++ I++AL KK A LGI +ATLYRK +++ Sbjct: 536 SLPPTDAQTVLPLKEVERREIQKALQLFGESTQGKKSAAKSLGISLATLYRKTEEF 591 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 679 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 213/594 (35%), Positives = 331/594 (55%), Gaps = 25/594 (4%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L I P I R A++++ V+ L+VE+V+ R+AGTG Y + +G + ++ R Sbjct: 1 MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARR 60 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 T V + RF P+C+GC K+ C EK L P+ + + G+I +I E + I Sbjct: 61 TGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILK 120 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPG--DNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 F D+V +S I +S + Q N + +++D GV V + ++ +VN Sbjct: 121 TRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVN 180 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR-- 244 + A +T+ + + LT N ++ +S++ K +++G+ + + Sbjct: 181 EHAKRTIRLPDPPL----PANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDP 236 Query: 245 --QLFLMAFHQSHTSFSVANAPDEPHIEQ---LVGECRVMRQLKRLISRIAPSPSSVMVV 299 ++ HQ + ++ + H + ++G + +LK + IA S S+V++ Sbjct: 237 RFARLVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIE 296 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+ ARAIHK S R ++PFIAINC AIP+ LLESELFGY+ GAFTGA ++G+ G Sbjct: 297 GESGTGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIG 356 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G LFLDEI MPL LQ KLLR ++ R I +G++ I +DIR+I+ATN NL++ Sbjct: 357 KFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSE 416 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 IA FR DL+YRL VIP +PPLRER ED+++L +F + R G I P ++ Sbjct: 417 LIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMD 476 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 +L+ + WPGN+RE N +E++VN++P V+ +LPP L E+ + + + + Sbjct: 477 MLKSYPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIP 536 Query: 540 LDDAGGTALEEMEKQMIREALSR----HNSKKQVADELGIGIATLYRKIKKYEL 589 L E+E+Q I+ AL R KK A+ LGIG+ATLYRKI+ Y L Sbjct: 537 --------LSELERQAIQRALDRFGSTTGGKKLAAERLGIGLATLYRKIQLYGL 582 >UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=A5I5X3_CLOBH Length = 587 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 223/591 (37%), Positives = 347/591 (58%), Gaps = 27/591 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L++IQ T+ ++A +++SV++++VEIVD+NLCR+AGTG Y + + +S + +V+ Sbjct: 4 STLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVI 63 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T ++++ LC+ C+ + NC EK + TP+IL D +GVI L+ Q+ H Sbjct: 64 KTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFI 123 Query: 128 DNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 +N F + IS +K E + + + +ID++D+GVLV N + + Sbjct: 124 ENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVT-KNNEIVHM 182 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ-------L 238 N +A+K L + NN K I ++ S + G + + D++ ++G+ L Sbjct: 183 NTSAMKQLKLKANN-TNKKIT---ISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVL 238 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + +F H V+ + +E ++G+ + M QLK I +IA S S+V++ Sbjct: 239 SDYDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNSIKKIASSSSTVLI 298 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKEV+ARAIH S + PFIAINC AIP+ LLESELFGYV+GAF+GA NG+ Sbjct: 299 TGESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRV 358 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN G +FLDEIGDMPL LQ K+LR ++ R+++ IG++ I +DIR+I+ATN++L Sbjct: 359 GKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLK 418 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + I E KFREDL+YRLNVIP+ +PPLRER+EDIELL+ + + G + I + Sbjct: 419 KLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECK 478 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 +IL + W GN+REL N +E+++N+ ++ +LP N++ N + H Sbjct: 479 DILIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNF---------QGHG 529 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIK 585 D L+++EK I AL + K+ A+ LGIGIATLYRK++ Sbjct: 530 MNIDEDIRPLKDVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLE 580 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 361/601 (60%), Gaps = 31/601 (5%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +++L IQPT+ ++A++++ VL++EVEI DENL R+AGTG + K + + + G + R Sbjct: 1 MKTILEDIQPTVIKYAKIISKVLKVEVEIADENLVRIAGTGIFKKKINKSMLGEGYVYRT 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L T +++ + LC C NC EK + TP+ L D +GVI LI + +EQ+EH Sbjct: 61 ALRTGIPQIIENPGKEKLCLPCCKCGNCEEKFEMCTPIKLGDDVIGVIGLICLNNEQREH 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQ 183 + + + ++++ IS E + + + +ID MD+GV++++ + ++ Sbjct: 121 LMKDFHAYMEFLKQISEFISITAYERKEKLREQVLLRSLNLVIDKMDRGVIILNKKGKIT 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN--I 241 +N+ A++ L + N+ I + ++ + G ++ + +++ ++G +H+ + Sbjct: 181 HINKKAMEILNFIDNHFIHE-VKVEEV---GESIAGMHEYKLKINNQKFSVVGNIHDMGL 236 Query: 242 QGRQLFLMAFHQSHTSFS-----VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 Q + Q + SF V+NA + ++GEC VM LK+ + +I+ S S+V Sbjct: 237 NENQFDKIIIFQDNKSFKDIVTGVSNAGNNIVCNDILGECEVMITLKKNLKKISLSSSTV 296 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ ARA+H R+ + FIAINCAAIP+ LLESELFGYVKGAFTGAS+ G Sbjct: 297 LITGESGTGKEMFARAMHNEGNRKKEAFIAINCAAIPDSLLESELFGYVKGAFTGASSTG 356 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + AN GT+FLDEIGDMPL LQ KLLR ++ R I+ IG++ PI +D+R+I+ATN+N Sbjct: 357 KIGKFELANKGTIFLDEIGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKN 416 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP--GIA 474 L + I E KFREDL+YRLNVIP +PPLRER +DI++LV+ F+ +T+ L + I Sbjct: 417 LVKLIEENKFREDLYYRLNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDKHFSSIHID 476 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 V E + WPGN+REL N +E+++N++ + + +P ++L N + EV Sbjct: 477 NKVWETFYNYSWPGNIRELENTIEFMINMLGTDGNLTIDSIPNSVLYNERKIKKGKKEV- 535 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYELL 590 L+E+EK I +AL+ + KK A +LGIGIATLYRKI++Y L Sbjct: 536 -----------YNLKELEKNEIIKALNIYGPSAQGKKAAAKKLGIGIATLYRKIEEYNLS 584 Query: 591 N 591 Sbjct: 585 K 585 >UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMP1_ACIFE Length = 596 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 211/597 (35%), Positives = 342/597 (57%), Gaps = 21/597 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +S L IQ T+ +A +++ + ++VE+VD+NL RVAGTG + + ++ + R Sbjct: 8 IRSRLRNIQRTVASYAGIISKIAGVDVEVVDDNLYRVAGTGMFAAGVDASMAQEGHVYRK 67 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VLET +V+ Q + +C+GC + NC E+ L P++ + +GVI L+ + EQ+ H Sbjct: 68 VLETGKRRVIYQPGEELVCQGCPNFLNCPEEIELAMPILAEGHPIGVIGLVGSSREQKLH 127 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I +N F + + I+ K +E + + + ++++ QG+L++ + RV Sbjct: 128 ILENETLFLELIEQIADFISVKAMERERALQREALLSTLNATLEHIQQGILILGKDFRVT 187 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ------ 237 N+ A++ L N+ G+ I L + + ++ ++ + ++G Sbjct: 188 DCNRAAMEQLETP--NLAGERIF---LEATGDNLAKYTEYSLTALGRQYRLMGTYLPVPQ 242 Query: 238 -LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + Q +F + F A P ++G +LK IS++A S S+V Sbjct: 243 PTRDYQSVLIFYRSREIKERYFETAALPAVDK-TSILGSSPATLKLKEEISKVARSTSTV 301 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+VA +I + S RR+K FIA+NCAAIPE ++ESELFGYVKGAFTGA NG Sbjct: 302 LITGESGTGKEMVATSIWRESDRRDKRFIALNCAAIPESIMESELFGYVKGAFTGADPNG 361 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 + G + N G +FLDEIGDMPL LQ+KLLR ++ R+I+ IG++ + +D+R+I+ATN++ Sbjct: 362 RMGKFELTNEGVIFLDEIGDMPLYLQSKLLRVLQERKIVRIGSNQLMDIDVRVIAATNKD 421 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + E +FREDL+YRL+VIP+ + PLRER EDIE L ++ R+ G P + + Sbjct: 422 LKKMVREKRFREDLYYRLDVIPLRVAPLRERLEDIEDLTLFYSQRFARKFGKKAPRLTEE 481 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V++ L+ +RWPGN+REL N +EY+VN++ +D ++LP ++ + Sbjct: 482 VMDALKGYRWPGNVRELENAVEYMVNLMGEDGTLDVSMLPEDIRTGSREAAAPTENGPGK 541 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 +L E+EK IR+AL + + K A +LGIG+ATLYRKI++Y L Sbjct: 542 QTGAGQI--LSLRELEKNAIRQALLQCGNHTAGKAMAARKLGIGMATLYRKIQQYGL 596 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 199/602 (33%), Positives = 324/602 (53%), Gaps = 30/602 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L + Q+ A +A+VL++EVEI+D +L RVAGTG +G +L + +HVL Sbjct: 2 SRLALVSENGQKVAEAIATVLKVEVEIIDTDLVRVAGTGIVRYDVGTRLLR-GLVNKHVL 60 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T + + ++ F +C C C KA + P+ ++ +G ISLIA Q+E + Sbjct: 61 QTGSHIFIREAGFHEICLSCPLTGRCFYKASIVYPITVESEVIGTISLIAFDVAQKETLC 120 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFV 185 N +++ ++ + SK++E + + ++ ++D + +GV+ VD + + Sbjct: 121 KNTDSLIEFIGRMADLISSKVVEQEIMAERTVLANRLEAVVDAVGEGVMAVDRDGCITHF 180 Query: 186 NQTALKTLGVVQNNIIGKPIRFR------PLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 N++A + G + +IGK + + + ++++ + ++ Sbjct: 181 NRSAERIFGAKKEQVIGKDSKILFPSLPLSSVLQDGIGFNSKEVFINYEGRKLHLLSTAK 240 Query: 240 NIQ-------GRQLFLMAFHQSHT-SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 I+ G F ++ ++ + N + + +VG + + ++K +I+ Sbjct: 241 PIKVKNGQVAGVVASFQDFKETQKLAYEIMNTHEMIGFDDIVGASKPLLEVKAKAKKISA 300 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S S+V++VGESGTGKE+ ARAIH +KPF+AINC A+PE LLE ELFGYV+GAF+G Sbjct: 301 SNSNVLIVGESGTGKEIFARAIHSAGPYGHKPFVAINCGAMPENLLEIELFGYVEGAFSG 360 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A GK G + AN GT+FLDE+G+M L LQ KLLR ++ R I +G + P+ V+IRII+ Sbjct: 361 ARRGGKPGKFELANGGTIFLDEVGNMSLYLQTKLLRVLKERVIERVGGTRPVPVEIRIIA 420 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN +L + + + FR+DL+Y L+VIP+ +PPLR RQEDI LL+ +++ R LG Sbjct: 421 ATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPLRTRQEDIPLLLDFYMKRFNRLLGKDIK 480 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT 531 G + +E K+ WPGN+REL +EY VN+ +I LPP + D Sbjct: 481 GFTDEAMEACIKYPWPGNVRELVYAVEYAVNL-EEEPLISPESLPPAIREGARKRTRDGI 539 Query: 532 EVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKY 587 L L ++EK+ I AL ++ K + A LGI AT+YRKI+K+ Sbjct: 540 AGGGQLLQ--------LAQLEKEAITAALEQYGWSDEGKTKAARALGISRATIYRKIQKF 591 Query: 588 EL 589 +L Sbjct: 592 KL 593 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 209/595 (35%), Positives = 320/595 (53%), Gaps = 18/595 (3%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L IQ ++Q+ A +ASVL++EVEI D R+AGTG + R ++G + R L Sbjct: 3 LRDIQESVQQIASAVASVLRVEVEIADSQFLRIAGTGKNEAGVLRTMAGEDHIYRESLLA 62 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 V+ D C C NC E + P+ L + +GVI L+A EQ+E + + Sbjct: 63 GHPVVIMNPGQDERCRPCMHYGNCTETGEICCPIQLDNENIGVIGLLAFDEEQRERLFAD 122 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNIS--KIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + Y++ ++ + KL E + + + ++D MD+ V +VD +NR+ NQ Sbjct: 123 VDAILTYLQKMAELIAIKLKEHYLYVEQLHTVEKLRVVMDEMDKAVFLVDQDNRIIQANQ 182 Query: 188 TALKTLGVVQNN-IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR-Q 245 A + L + ++ + I L + + V +DK+ L + + G + Sbjct: 183 RARQYLQLDHDDSQTAEWIDAIRLADAAQSAPKQVVLSVGQEDKTFLFAIKPILLAGTVK 242 Query: 246 LFLMAFHQSHTSFSVANAPDEPH----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 +++ +A + G + Q K + R+A S S+V++ GE Sbjct: 243 EWVITLDDVQEVVQIARQVSGYSEPDPFRMIGGNSPAIVQAKEVARRVAASDSTVLLQGE 302 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+ A+AIH+ S RR++PF++INCAAIPE L+ESELFGY +G+FTGA GK GL Sbjct: 303 SGTGKELFAKAIHQASPRRDEPFLSINCAAIPEHLMESELFGYEEGSFTGARKGGKPGLF 362 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS-SPIQVDIRIISATNQNLAQF 420 + A GTLFLDEIGDM + LQ+KLLR ++ +E+ IG + PI++ RII+AT+ +L + Sbjct: 363 EVAGKGTLFLDEIGDMSMHLQSKLLRVLQEKELYRIGGNGKPIRLAARIIAATHLDLQER 422 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + G FR DL+YRL+VIPI LP LRER+EDI L + L H R+G G + + I Sbjct: 423 VDAGLFRLDLYYRLHVIPIHLPSLRERREDILPLANDILLAHANRVGKGLHGFSKETQNI 482 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L H W GN+REL N++EY VN+ + + LP + G +S V E+ Sbjct: 483 LFHHDWRGNVRELENVIEYAVNMEATS-WVQPASLP---IRTGRLRESSPHSVEESQGPF 538 Query: 541 D-DAGGTALEEMEKQMIREALS----RHNSKKQVADELGIGIATLYRKIKKYELL 590 D G L+E+E+ I A+ R+ K++ A LGI ATL+RK+++Y + Sbjct: 539 DWQKQGLLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREYGIT 593 >UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-control protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5B22 Length = 577 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 222/595 (37%), Positives = 348/595 (58%), Gaps = 29/595 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + +L Q+Q Q++ +L+ +L+++V I+D R+AG+G + LG +S +++ Sbjct: 1 MEGILQQMQGIAQKYVDILSEILKIDVTIIDIRQIRIAGSGRMQERLG-DMSSYGYIVKT 59 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 LE+K V+T +C C K C K+ + P+IL D+ +G + + +Q+ H Sbjct: 60 CLESKKRIVLTNPEDSEICFSCPKKATCDNKSEVWQPLILDDKVIGALGFVCFNQKQKNH 119 Query: 126 ISDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 N F ++ S + VSK + + ++ +F +ID ++ G++V++ E Sbjct: 120 FEKNYNLFLKFLEQFSDLIVSKARDVIEFNRNKDVLLLFENVIDRVEMGMIVLNKEEEAV 179 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG 243 +NQ A K L + + GK + + ++ + ++ + IG+ ++++ Sbjct: 180 KINQLARKILHINEA---GKKLPDILFSETGKKVLDLKEYQIQIENITYTAIGKFYDVEL 236 Query: 244 RQ-----LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 LF A + + N+ + I++++G + +K I IAPS SSV + Sbjct: 237 EDYKKVFLFQNAVYDEENILGINNSLQKRDIDKILGVSSKIMSIKEKIQIIAPSASSVFI 296 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE+VA A+H S R+N PFIA NCA+IPE LLESELFGYVKGAFTGA G+ Sbjct: 297 TGESGTGKELVATALHSESERKNFPFIAFNCASIPENLLESELFGYVKGAFTGADNKGRI 356 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G+ +AAN GTLFLDE+GDMP LQ KLLR +E +EI +G++ I++D+R+I+ATN+N+ Sbjct: 357 GIFEAANGGTLFLDEVGDMPSYLQVKLLRVLERKEITRLGSNQVIKIDVRLIAATNKNME 416 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + +G+FREDL+YRLNVIPI LPPLRER+EDI++L F+ ++ L GI + Sbjct: 417 ELVTKGEFREDLYYRLNVIPIKLPPLRERKEDIKILAKNFIDKYSSILNKTVSGIDQNFW 476 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 + ++ WPGN+REL N MEY+VN++ EVI+ LLP +L H+ Sbjct: 477 RKMEEYSWPGNVRELQNSMEYVVNMMKYTEVINFRLLPHKVLGK--------------HI 522 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 ++D+ LE MEK+MI + L+ + K+++A +LGIGIATLYRKIK YEL Sbjct: 523 TIDEEENFNLEHMEKRMIEKLLNIYGYSPEAKQEIAKKLGIGIATLYRKIKVYEL 577 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 199/596 (33%), Positives = 337/596 (56%), Gaps = 21/596 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + L+ I+ + R+ +++++L ++V +VD+N+ RV GTG Y G + ++ Sbjct: 1 MEVSLLNIKEDVNRYINIISNLLNVDVGVVDKNMFRVTGTGLYKNIDGVYAL--GSVYKN 58 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 LET ++ R LC C K+NC+EK + TP+ +GV+ L+ EQ+ Sbjct: 59 TLETGKTHIIENPRLHTLCTQCKDKKNCKEKLEISTPIYCHKEIIGVLGLVCFNDEQKNK 118 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGP--GDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I N + + + I+ K E Q + T+++N+++GV+++D +N + Sbjct: 119 ILANCESYLHFTKQIAEFIGIKFFEYQENLLQKDQENTLKTILENINKGVIIIDKDNTIV 178 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ------ 237 +N A++ L + + +GK I + ++++ +S ++K ++G+ Sbjct: 179 SINPIAIEKLNL-KFQCVGKKI---IIITQNDYLMNEEVFKLSINNKDFTVVGKKISLTS 234 Query: 238 LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 N + + + + + + + + G ++LK I +IA + S+V+ Sbjct: 235 FDNRKNSAFIFEDIKKINENIAEITNNNVISLNDIYGNSEATKKLKENILKIADTSSTVL 294 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKE+VAR++H S R+NKPF+ INC+AIP+ LLESELFGYVKGAFTGA+ NG+ Sbjct: 295 ITGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANNNGR 354 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + ANTG +FLDEIGDMPL LQAK+LR I+ ++I IG++ I +DI+II+ATN NL Sbjct: 355 IGKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATNVNL 414 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + I E KFR DL+YRLNVIP L PLRER+EDI ++ + + R G I +V Sbjct: 415 EEKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIISIDDEV 474 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + + WPGN+REL N++E + N+ + +++S+LLP N+ + +++ + Sbjct: 475 KQAFLSYDWPGNVRELENVIELMFNISGNSSILNSSLLPENISKKSVSNPPKSSQIIIKN 534 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYEL 589 S D + +EK I + L + + + +++++GIG+ TLYRK+K++ + Sbjct: 535 PSDD---FENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLKRFGI 587 >UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional regulator YgeV n=3 Tax=Clostridium botulinum RepID=B2V0C5_CLOBA Length = 580 Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 206/589 (34%), Positives = 342/589 (58%), Gaps = 17/589 (2%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + L+ I+ I +++ +L+++L ++VEIVD+ L RVA TG Y K +G + + + Sbjct: 1 MKINLVDIKEIINKYSVLLSNLLTIDVEIVDDKLIRVAATGIYEKRIGENIRDQGYVYKK 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L+T V+ D LC+ C K NC E + P+ ++ GVI L+ +Q+E Sbjct: 61 SLDTGKTLVIENPGKDALCDECKKKGNCSEFMEICVPIKYEETTFGVIGLVCSNEDQKEK 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + NL ++ I+ K++E +N K F +++++D G++ VD ++ + Sbjct: 121 LKSNLPIMITFLEQIAEFISIKVIEQNQIFENENSIKFFKEIVNSVDDGIITVDIKDEII 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN--I 241 N ALK L V NI+GK I +T + + +++ IIG++ I Sbjct: 181 TANNNALKLLKVKP-NIVGKKITVEE---TDEYTPKGGIYNFNIENEKFKIIGKVVKNCI 236 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + + + + + + + +VG+ + +LK+ I +++ + +++++ GE Sbjct: 237 NNKDCNKIIIFKELITIEEELKNNSINCDSIVGQANNIAELKKKIKKVSYTDATILITGE 296 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+VARAIH R+N PFIAINC AIPE LLESELFGYVKGAF+GAS+ G+ G Sbjct: 297 SGTGKELVARAIHSEGNRKNMPFIAINCGAIPENLLESELFGYVKGAFSGASSGGRIGKF 356 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + AN G +FLDEIGDMPL LQ K+LR ++ + I+ IG++ I ++IR+I+ATN+NL + + Sbjct: 357 ELANNGVIFLDEIGDMPLYLQVKILRVLQEKTIVKIGSNKLINLNIRVIAATNKNLKKLV 416 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 EGKFR DL+YRLN+IP+ +P LR+R ED+ L+ + + R I +++ I Sbjct: 417 DEGKFRADLYYRLNIIPMEVPSLRDRGEDVLLITKMLIEKYNARCNKYIHTIDKELIRIF 476 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 + + WPGN+REL N++E++V++ V++ ++LP + + + E + + Sbjct: 477 KDYSWPGNIRELENIVEFMVSLSGENGVLEKSMLPISFVQSYNEELKNRRDEICM----- 531 Query: 542 DAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKK 586 D L+E+EK I++AL ++ + K +VA +LGIGIATLYRKI++ Sbjct: 532 DDEIMKLKEIEKIYIKKALEKYGNSTKSKMKVAKKLGIGIATLYRKIEE 580 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 233/596 (39%), Positives = 345/596 (57%), Gaps = 20/596 (3%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S+L +IQ ++ +A ++A +LQ +VEI DE+L R+AGTG Y + + + ++V Sbjct: 2 SLLKKIQNYVKDYAEIIADILQCDVEIADEDLVRIAGTGQYSENINELCK--GIVYKNVF 59 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 ETK +++ + D LCE C K+ C E + P+ +D+ +GVI LI T E ++ + Sbjct: 60 ETKKSRILINPKEDELCEECSHKDTCTETLEMSAPIFYKDKVIGVIGLICFTEEDKKRLL 119 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFV 185 N+ + + I K+ E + + I I +I+N D+ VLVVD E ++ Sbjct: 120 KNMETYLKFTEKIGDFISGKVFELEEELEKKEIMGIMKQIINNYDKCVLVVDSEGKILDA 179 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG-- 243 N ALK L + +G + + ++ G + + +IG L + G Sbjct: 180 NDLALKELKIESG--LGLAYQRINIIPKNEALFGKDIFSAEINREKYNLIGTLIPVTGFS 237 Query: 244 ---RQLFLMA---FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 ++FL F +S A + +E ++ + M +LK I +IA + S+V+ Sbjct: 238 SKEYKIFLFENFNFDKSKEISKNKYAANNIFLEDIISKSEKMSKLKEKIRKIAKTQSTVL 297 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKE++ARAIH S R +PFIAINC AIPE LLESELFGYVKGAF+GAS G+ Sbjct: 298 ITGESGTGKELIARAIHNCSDRAKQPFIAINCGAIPENLLESELFGYVKGAFSGASNEGR 357 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + AN G +FLDEIG+MP LQ KLLR ++ R I+ IG++ I ++IR+I+ATN+NL Sbjct: 358 VGKFELANNGVIFLDEIGEMPFFLQVKLLRVLQERTIVRIGSNKLINLNIRVIAATNKNL 417 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + EGKFREDL+YRLNVIP+ +P LRERQEDI LL Y +++ LGS + D+ Sbjct: 418 LKLVKEGKFREDLYYRLNVIPLKVPALRERQEDILLLRDYLNTKYSKSLGSSKIVMDDDI 477 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 EI KH WPGN+REL N +E+L+N+ ID +L N + ++ E Sbjct: 478 NEIFLKHSWPGNVRELENSVEFLLNMSDENGNIDEE-TREDLKRNLKSNSKYDDKILEKK 536 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + ++D LEE EK++I +AL + K A++LGIGIATLYRKI+KY+L Sbjct: 537 V-IEDDEIITLEESEKRLISKALRIYGSDTTGKNICAEKLGIGIATLYRKIEKYKL 591 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 212/600 (35%), Positives = 336/600 (56%), Gaps = 18/600 (3%) Query: 5 TTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLR 64 T S L + Q + ++ +ASVL +++EIVD+ L R++GTG Y + + + Sbjct: 4 TMLSKLKEFQQEMIKYTETVASVLDVDIEIVDDRLIRISGTGLYKSKINESVVTEGFIYD 63 Query: 65 HVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQE 124 +V++T E VV + LC C C K + P+ +R +GVI I+ ++ Sbjct: 64 NVIQTGQELVVLDICDNQLCIECSHYMKCLNKVIIAVPIKYNNRTIGVIGAISTDKTKKV 123 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI--FATMIDNMDQGVLVVDDENRV 182 IS + + +V HI + K+ E + ++ K+ +I+N+++GV+++D +++ Sbjct: 124 EISAKIDNYLKFVNHICDLISMKIEEHEASKNSSRKMDMMIEIIENVEKGVIILDINSKI 183 Query: 183 QFVNQTALKTLGVVQ---NNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 ++N ALK L + + NI+ I + + K + ++ Sbjct: 184 SYINNIALKKLDIYKNIIENIVNIVSVESSSNGHELLEIDIDNKIYNINAKIIPVYPYIN 243 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 +F + V + IE ++G M ++K ++A S S+V++ Sbjct: 244 QYDKIIIFDKTYINHKGHGKVNSGWGNSDIESIIGNSEAMLKVKERTKKLAKSNSTVLIT 303 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE++ARAIH R NKPFIAINCAAIPE LLESELFGY+KGAF+GAS+ GK G Sbjct: 304 GESGTGKELIARAIHAEGSRWNKPFIAINCAAIPENLLESELFGYIKGAFSGASSGGKVG 363 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G +FLDEIGD+ + LQAKLLR ++ R+ IG++ I +DIR+I+ATN+NL + Sbjct: 364 KFELANEGVIFLDEIGDLSMPLQAKLLRVLQERKFARIGSNKLIDLDIRVIAATNKNLLK 423 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + EGKFR+DL+YRLNVIPI LPPLRER++DIE ++ F ++ LG I +V+ Sbjct: 424 LVNEGKFRDDLYYRLNVIPINLPPLRERKDDIEAIMMKFASKYSLELGIQLNKIEENVMN 483 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 +L + WPGN+REL N +EY++N+V +I +LP ++LN + + Sbjct: 484 MLINYNWPGNIRELENAVEYMMNLVGDDGIIYKDMLPLDILNYYNINGNVCKNKDINIIF 543 Query: 540 LDDAGGTALEEMEK---------QMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 DD G +E E+ I + L+++ +KK++A +LGIG+ATLYRK+++ Sbjct: 544 EDDIVGGIVENQERILSIKELELTYINKLLNKYGRDTKTKKKIAKDLGIGLATLYRKLEE 603 >UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium RepID=A5TW11_FUSNP Length = 571 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 193/591 (32%), Positives = 316/591 (53%), Gaps = 30/591 (5%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 + L I +++++ +++ V+ ++VEI+D + R+AGTG + +G + S + VL Sbjct: 2 NFLNFILDDVKKYSEIVSKVINIDVEIMDSSFTRIAGTGTLKEKVGLNMKDESHIYHQVL 61 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +TK ++ + R D C C K+ C+E+ + TP+I QD +GVI LI +++ Sbjct: 62 KTKKTIIIFEPREDTHCFTCQKKDLCKEELEISTPIIYQDEVIGVIGLICFEKDKKYDFI 121 Query: 128 DNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + + ++ IS K+ ++I + +I+ + +++ + +N ++ + Sbjct: 122 EKKDLYIQFLEQISKFISYKVYVYLSSLQLKRDNEILSNIINRVQDIIILTNRKNEIELI 181 Query: 186 NQTALKTLGVVQNN--IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG 243 N+ LG + + II K E NF + + I + D + + + Sbjct: 182 NKKGQNILGSISEDEKIILKTSSNFLNQKEFNFLYSGKE-ISAIGDIFTFSLEKSEELTK 240 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + + ++ E M+ + +S++A + +SV++ GESG Sbjct: 241 TLFVFKEISEFKNYLLSFHGNSSI----ILLESPQMQDIYSHVSKVARNDTSVLITGESG 296 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE++A+ IH LS N PFI +NC AIPE L+ESELFGY KGAFTGA GK G + Sbjct: 297 TGKEIIAKQIHDLSSYSNGPFITVNCGAIPESLMESELFGYTKGAFTGADPKGKIGFFEK 356 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 AN GT+FLDEIG+MPL +Q K+LR ++ ++I PIG+ + Q+++RII+ATN+NL + + + Sbjct: 357 ANNGTIFLDEIGEMPLQIQVKILRVLQDKKITPIGSRTEKQINVRIIAATNKNLEEEVEK 416 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 FR+DLFYRL+V PI +PPLRER++DI+ LV +F+ + I+ DV + + Sbjct: 417 RNFRQDLFYRLSVFPIDIPPLRERKKDIKTLVEFFIKKYYISFQKEQKEISTDVYQHFLE 476 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+REL N +EY +N++ E ID LPP L N D Sbjct: 477 YSWPGNIRELKNTIEYCMNMIEENEKTIDLKHLPPKFLGNKE----------------KD 520 Query: 543 AGGTALEEMEKQMIREALSRHNSKKQV----ADELGIGIATLYRKIKKYEL 589 L+E+EK+ I L + + + A LG+GIATLYRK+ Y L Sbjct: 521 EKIKTLKELEKEAISNLLKIYGNSSEAKKIIAKSLGVGIATLYRKLSSYNL 571 >UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6ANF6_DESPS Length = 600 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 207/592 (34%), Positives = 321/592 (54%), Gaps = 23/592 (3%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 VL+ +Q IQ +A ++ V EVE+VD NL R+AGTG Y K +G+ + LL+ L+ Sbjct: 19 VLLSLQKQIQYYADTISKVTGFEVEVVDTNLIRIAGTGDYSKNIGKSIKKAGNLLKATLK 78 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + + R + +C+GC +KE C E + P+ G + LI + E ++ + Sbjct: 79 STKPLFIENPRKNSICKGCQTKEQCHELLSICAPISDGKNTYGAMELICFSEEIRKKLIP 138 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFAT---MIDNMDQGVLVVDDENRVQFV 185 + ++++ +++ + +LE N++ +F +I+ ++G ++ D +V F Sbjct: 139 QRDVYVNFLQLLTSSIAAHVLEKHA-QKNLNDLFDAMSEVIEINNRGTMICDTNGKVVFK 197 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR- 244 N A + L + LT + I+ D+ +L+ G+ + + Sbjct: 198 NARAQEILHKT----LNSNFENFSLTATGVTFSDLDEFIIRQGDRQQLLAGKRVKLDSKT 253 Query: 245 ----QLFLMAFHQSHTSFSV-ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 +F+ QS S S ++P++ ++ ++G ++R LK I + + SSV++ Sbjct: 254 SRFSSVFIFDTIQSVISLSSGPSSPEDASLQHIIGNSPLIRTLKSQIQATSDTNSSVLIS 313 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+VARAIH R +PF+AINC AIP+ LLESELFGYV GAFTGAS G+ G Sbjct: 314 GESGTGKELVARAIHFSGNRNKEPFVAINCGAIPDTLLESELFGYVGGAFTGASKQGQIG 373 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + A G +FLDEI MPL LQ KLLR ++ R I +GA++PI VDIRII+A N NL + Sbjct: 374 KFELAAGGVIFLDEISSMPLYLQVKLLRVLQERTITRLGAANPISVDIRIIAACNDNLHE 433 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + + KFR DL+YRLNVIPI PPLR R ED+ LL+ +F + + ++ ++ + Sbjct: 434 MMLQNKFRNDLYYRLNVIPIETPPLRNRMEDLTLLIKHFTNKYCDLFNKDQIFLSKNIRQ 493 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 + K+ WPGN+REL N +EYLVN+ ID T + L N + + H Sbjct: 494 RMEKYLWPGNIRELENAIEYLVNIADKKGKIDETSIYSGFLVNPENLGTTIPLSPNNHPP 553 Query: 540 LDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKY 587 + L+E+E Q I A++ + K+Q A LGI +ATLYRK Y Sbjct: 554 V-----IPLKELEFQAITRAIALYGDSTEGKRQAAKSLGISLATLYRKTSTY 600 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 205/599 (34%), Positives = 332/599 (55%), Gaps = 31/599 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ IQ A + SVL ++V IV++ L R+AGTG Y +G ++ + + L Sbjct: 7 LEYIKSDIQNIAEAIVSVLNIDVTIVNKELFRIAGTGVYIDKIGEKVDKYT-AFKKSLTE 65 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 + ++ + +C C C E A + P+I GVI LIA T EQ + I +N Sbjct: 66 QITILIDDPKSSDICRECYKSGACVEFAEVCCPIICDGVSHGVIGLIAFTKEQAQIIENN 125 Query: 130 LREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 +++ ++ + +KL + K T+++NMD+ V+ +D + ++ N Sbjct: 126 KSGLINFLGKMADLISNKLKAQIKTYELELEKKKLETLLNNMDKAVVSIDVDGKIDKYNS 185 Query: 188 TALKTLGVVQNNIIGKPI--------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL- 238 + + +++I GK I + F+ + + +D K I ++ Sbjct: 186 KFKELFNI-KDSITGKNIFVELDFIKKPSINNFKKDKSCSFFYKRYGYDSKGIYNINKIV 244 Query: 239 --HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + ++G + + + +++ N +E ++GE +R K+ + S S+V Sbjct: 245 LKNELKGYVIDFIDKRDAIKNYNKMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTV 304 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ ARAIH S R + PFIA+NCAAIP+ LLESELFGY +GAFTGA G Sbjct: 305 LITGESGTGKELFARAIHNHSNRVDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGG 364 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G+ + A+ G++FLDEIGDM L LQ+KLLR ++ +E+ IG+ S + +D+RII+ATN++ Sbjct: 365 KLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKD 424 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + G FREDL+YRLNVIPI LP LRER+EDI L++ + + ++++L I Sbjct: 425 LEKMVQNGTFREDLYYRLNVIPIKLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDSR 484 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 VV+ + +++WPGN+REL N++EY VN+ S +I ++P + N E Sbjct: 485 VVDAMMEYKWPGNIRELQNIIEYSVNMSSSS-IITMNVIPQKIKNTSVEE---------- 533 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELLN 591 L + L+E+EK I +AL+++ K+ A LGI ATLYRKI+KY +++ Sbjct: 534 -LEVKSDRIIPLDELEKIEIIKALNKYKDYKKDKELTAKALGISRATLYRKIEKYNIIS 591 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 201/592 (33%), Positives = 325/592 (54%), Gaps = 27/592 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 ++L +I+ +Q A + ++ ++V IVDE L R+AGTG + + +GR NS Sbjct: 16 MDNILEEIKNDLQSIAETIKAITNVDVTIVDEKLKRIAGTGPFKEKIGRYAPKNS-AFEK 74 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L+T + + P+C C+ +NC+E+ L P+ ++ +G++ + + Sbjct: 75 ALKTGRQYFIVNPGKHPICASCEEHQNCKEELELCIPIRNGEKIIGILGMSIFDKNTKID 134 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + +F ++ + S + +K+ E + + S T+I+++++G++++D +NRV Sbjct: 135 FLNKQEDFKNFEKRFSELITTKINEKKLGVMIEYRSSELMTLINSINEGIIILDSQNRVV 194 Query: 184 FVNQTALKTLGVVQNNIIGK--PIRFRPLTFESNFTHGH---MQHIVSWDDKSELIIGQL 238 VN+ + L V + + P++ + +F + + S I + Sbjct: 195 TVNKYLKEKLNVSEKTPVKSIFPVKLLQELEKKDFEGEVGPVEIKGIKFVINSSPIAVKG 254 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + +F + + + + + +VGE ++ K +IA S V++ Sbjct: 255 QRVGTVLVFSDFSKMQESVYKASKMSEIVTFDDIVGESDAIKYAKSQAIQIADSEVPVLL 314 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESGTGKE+ ARAIH S R+N+ F+ INC AIPE L+ESELFGY KG+FTGA+ GK Sbjct: 315 LGESGTGKELFARAIHFQSSRKNEIFMPINCGAIPETLIESELFGYEKGSFTGANVTGKI 374 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A GT+FLDEIGD+PL +Q KLLRA+E +EI+ IG +PI+V+ RIISAT+++L Sbjct: 375 GKFELAKDGTIFLDEIGDLPLSMQVKLLRALEEKEIVRIGGYTPIKVNPRIISATHKDLY 434 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 Q + EGKFREDLFYRLNV+PI +PPLRER DI +L +YFL + G G + + Sbjct: 435 QMVLEGKFREDLFYRLNVVPIVIPPLRERGYDIIILANYFLEKFNKIYGKNIKGFSKESE 494 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++L + +PGN+REL NL+EY VN S + I + L E + E+ Sbjct: 495 KLLLSYPFPGNIRELRNLIEYAVNF-ESKDYISPETINQRLHRKTLEEGKTLAEM----- 548 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 ++ EK +I+E + R+ SKK +A +LGI IATLYRK+ + Sbjct: 549 ---------VKNYEKNVIKEYMLRYGSDVESKKLIAKKLGISIATLYRKMAE 591 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 196/602 (32%), Positives = 322/602 (53%), Gaps = 33/602 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ ++Q A +A+VL+++V I+D+N R+A TG Y KF+G ++ G + E Sbjct: 3 LNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEK 62 Query: 70 KTEKVV-----TQSRFDP-LCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 KT + + + +P +CE C++KE C E A +G P+I++D +GVI + +Q Sbjct: 63 KTNHIKRYLKDNEKKINPSVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQL 122 Query: 124 EHISDNLREFSDYVRHISTIFVSKLL--EDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 IS ++ +ST+ V ++ + ++ +ID++ G++ VD+ Sbjct: 123 NMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTEETNHIIDSLSHGIMCVDNNGI 182 Query: 182 VQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ--------HIVSWDDKSEL 233 ++++N K L + + +++ I+ F + S+ KS Sbjct: 183 LKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKSSP 242 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSP 293 II + + F + ++ + + E ++G ++ +K + IA + Sbjct: 243 IIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTD 302 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE+ ARAIH S R + PFIA+NCA+IP+ LLESE FGY GAF+GA Sbjct: 303 STVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAK 362 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 G+ G + AN GT+FLDEIGD+PL LQ K+LR ++ + IG I VD+RII+AT Sbjct: 363 REGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIAAT 422 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N++L + G+FR+DL+YRLNVIPI LP L++R EDI LL Y + R + Sbjct: 423 NRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIKQL 482 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 + +V + +K+ WPGN+REL N++EY+VN +I + LP + + E+S Sbjct: 483 SKEVKDSFKKYSWPGNIRELENVIEYIVNTTKEN-IIYNEHLPKSFKISKEDEKS----- 536 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + + L + EK ++ + + K+++A EL I ++TLYRK+ KY L Sbjct: 537 -------NKSLQDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRKLNKYNL 589 Query: 590 LN 591 Sbjct: 590 QK 591 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 191/591 (32%), Positives = 320/591 (54%), Gaps = 27/591 (4%) Query: 17 IQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVT 76 +Q+ A ++ VL L+V IVD +L RVAGTG+Y +G +L S ++++ + Sbjct: 21 VQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLPPGSG-YEFSIKSRQATTIN 79 Query: 77 QSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDY 136 + + +C C K C+EKA + +P+ L + + +I + A T Q++ ++ ++ + Sbjct: 80 KPGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSF 139 Query: 137 VRHISTIFVSKLLEDQGPGDNISKI--FATMIDNMDQGVLVVDDENRVQFVNQTALKTLG 194 ++ +S + +Q + + +++++ +G+L VDD N V N L Sbjct: 140 IKKMSELLADSFSNEQIILEKTKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLD 199 Query: 195 VVQNNIIGKPIR-------FRPLTFESNFTHGHMQHIVSWDD----KSELIIGQLHNIQG 243 + + +IIG+ + F + GH Q+ + I + Sbjct: 200 I-RGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGIHCLVNMKPIKMNNKVVGA 258 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 +F V+ ++ + +++LK +++ + S+V++ GESG Sbjct: 259 VATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESG 318 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+ ARAIH S R PF+ ++C AIPE LLESELFGY GAFTGA GK G + Sbjct: 319 TGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFEL 378 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A GT+FLDEIGDMP+ LQ KLLR ++ IG+ I++D+R+++AT+Q L +FI + Sbjct: 379 AEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEK 438 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 KFR DLFYRLNV+P+ +P LRER+EDI LL+++FL+ + +L P ++ +++ L + Sbjct: 439 NKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQ 498 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N+ EY +N+ G +D LP N+ + + E + ++ D Sbjct: 499 YSWPGNVRELENVAEYFININEKG-YLDLGDLPKNMKDK-------LLETQDYQKNVGDD 550 Query: 544 GGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYELL 590 LEE+EK+ +A+ + K+ +A +LG+ AT+YRK+KKY L+ Sbjct: 551 EILPLEELEKRSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGLI 601 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 194/597 (32%), Positives = 296/597 (49%), Gaps = 33/597 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L +P I++ ++ +L ++ +++E V T Y K G + S + VL Sbjct: 4 LDLCKPAIEKVITSISDILNVDAAVINERGHLVVSTERYLKQKGENVHVPS--IEFVLAK 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 VV + +C+GC ++C K L + + + + +GV+SL + T E Q +S + Sbjct: 62 GQ-YVVDKPGSMEMCKGCRFLDSCPAKVELLSSIKVANHAIGVVSLTSFTKEGQNRLSKH 120 Query: 130 LREFSDYVRHISTIF----VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + + +S + S D+ ++ +D + D V Sbjct: 121 TERYQQILTEVSEMITAIVQSHATRQTESSDDSMRLLEGALDTVADAYFTFDRSGNVIHT 180 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 N +A + L Q++++ + L S T + DK + I Q Sbjct: 181 NASARRLL--SQHDLLPAEVSRMLLPSLSGLTAHSLPIANCLVDKLDAPTEATPIIVNNQ 238 Query: 246 LFLMAFHQSHTSFSVANAPD---------EPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 L S +V D + Q+VG ++Q+K + +I S S+V Sbjct: 239 LIGGVLRVQRGSLTVPRLMDHQGSRSPGKADSLAQIVGNSPAIKQVKEMAMKIGNSNSTV 298 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+GTGK +A+AIH+ S R PF+AINCA+IPE L ESELFGY GAFTGA G Sbjct: 299 LITGETGTGKGHLAKAIHEASTRAYSPFVAINCASIPENLFESELFGYEDGAFTGAKKGG 358 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A GTLFLDEIGDMPL LQAKLLR ++ + + IG + + +RII+ATNQN Sbjct: 359 KPGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQN 418 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + + FR DL+YRLNVIPI +P L ER+EDIELL F+ + + G + GIA + Sbjct: 419 LEELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAGRTFFGIARE 478 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 + +L + WPGN+REL N +EY +N+ V+ + LPP L S Sbjct: 479 AINLLTHYHWPGNVRELENAIEYAMNM-EQDTVLTADSLPPRLRARPLVAPSHSGP---- 533 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 A + + + IR +L +H K++VA+ELGIG+ TLYRK+K + Sbjct: 534 ------AIKVRVADAQADAIRASLQKHGSDLKGKQRVAEELGIGLRTLYRKLKLLGI 584 >UniRef50_C5EGG3 Signal-transduction and transcriptional-control protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGG3_9FIRM Length = 585 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 316/592 (53%), Gaps = 34/592 (5%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L +IQ T+ +A +LA +L+++V IV+ + R+AGTG K + +S +L+ + Sbjct: 17 ILDEIQDTVILYANILAQILKIDVTIVNSSFKRIAGTGRLIKEINTDMSEEGHILKKAMV 76 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + ++V + + +C C S+E+CRE + TPV+++ + +GVI +Q+ H Sbjct: 77 SGETQIVNEPGKNEICRDCHSREHCRETFHMSTPVMIKGQAIGVICFTCFNQKQRSHALK 136 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNIS--KIFATMIDNMDQGVLVVDDENRVQFVN 186 N F +++ + + +K E N++ ++ T++D +D GV+V+D N V N Sbjct: 137 NQEIFKQFLQQFADLISAKAQEALENKKNLAMKELLETIVDRLDAGVIVMDQHNLVVQTN 196 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI--QGR 244 + + L + + ++ P+R P NF G ++ ++ S ++G++ + +GR Sbjct: 197 RMCCQILKMREGDLFTVPVRLAP---TGNFVGGLDEYRLTAGQSSYRLVGKVFELDTEGR 253 Query: 245 QLFLMAFHQSHT---SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 F + T S +A + +E++ G ++ +K+ + R+ SPS V+++GE Sbjct: 254 MTFFLFNQAERTLKDSLGLAGKRERSGLERIDGNSPQIQAVKQEMLRMVNSPSPVLILGE 313 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 GT K A AIH+ R + +NC +P+ + ELFG + A++ GK G + Sbjct: 314 KGTEKTKFAMAIHEEGERAGEMVCTVNCETMPQSQIGRELFGTART----AASKGKAGKL 369 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 +AA+ GTL L+E+ ++P +Q +L ++++ ++ GA +V+ RII ++ NL + + Sbjct: 370 EAASKGTLILEEVENLPYDVQLRLGEFLDSQLVVRQGALKGARVNTRIICTSSVNLGELV 429 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 +G+F +YR+N++P+ +PPLRER+ DI LL +L + R + I+ + Sbjct: 430 EQGRFLPAFYYRINILPLYIPPLRERKGDINLLAQKYLQRYARSMNKNIQTISDGFYACI 489 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 R++ WPGN EL N MEY N++ +ID LLP NL + D+ Sbjct: 490 RQYGWPGNKWELRNAMEYAANMMKLDGMIDIGLLPANLRTGVMQAEDDLN---------- 539 Query: 542 DAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 LE MEK+MI +A+SR+ + KK+ A LGIG+ATLYRK+ KY L Sbjct: 540 ------LESMEKRMIEKAVSRYGTSVEAKKKAAGALGIGMATLYRKLDKYGL 585 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 169/527 (32%), Positives = 290/527 (55%), Gaps = 20/527 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 S + +I+ IQ +S+++ ++ ++D +L RVA TG + + +G+ L + Sbjct: 1 MYSAMYEIREFIQNLIETTSSIIEFDIYVMDSHLVRVAATGLFKESIGQALPK-GCANDY 59 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSK--ENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 V+E ++ + + +C+ C K C + + P+ +C+G I+++++T + + Sbjct: 60 VIENGEVLIIDSPKGNKICDTCPIKTYGKCFNEYSIAYPIKNDGKCIGAITIMSLTSKLK 119 Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 E + ++ ++ ++K+ E + T+++++ +GV++ + Sbjct: 120 EKQVKIRSQLITFLERLAESILTKIKEKETK-----DRLITVLNSISEGVVLTSSSGEIL 174 Query: 184 FVNQTALKTLGVVQN--NIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI 241 N + L N I + ++ ++ I+ + + + I Sbjct: 175 VFNSVMEEILKHKNNIKEIFVEDNFENIISDFKEEAEKELEVILRAPIPNNRMFVSVKFI 234 Query: 242 QGRQ-----LFLMAFHQSHTSFSVANAPDEPHI----EQLVGECRVMRQLKRLISRIAPS 292 LF+ + T+ + D H+ + + G +++ Q K L ++ A Sbjct: 235 NNSNEKTDILFIFKHKKELTNIAYKLLADASHLNINLDSIKGNSKLINQTKNLATQAAKY 294 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 S+++++GESGTGKEV ARAIHK+S R+++PFIAINCAAIPE LLESELFGY GAFTGA Sbjct: 295 ESNILILGESGTGKEVFARAIHKMSKRKDEPFIAINCAAIPENLLESELFGYESGAFTGA 354 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 + GK G + AN GT+FLDE+GD+ L LQ KLLR IE ++ +G I++D+RIISA Sbjct: 355 NKGGKPGKFELANGGTIFLDEVGDLSLHLQPKLLRVIEQGQLERVGGVKSIKLDVRIISA 414 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 TN++L + +G+FRED FYRL VIPI +PPLR+R EDI LL +FL + ++L G Sbjct: 415 TNKDLETMVKKGEFREDFFYRLCVIPIMIPPLRKRLEDIILLAEHFLDKYNKKLNKNIVG 474 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL 519 I+ +V + L + WPGN+REL N++EY VN+ + +V+ + +P + Sbjct: 475 ISEEVKKQLLLYDWPGNVRELENVVEYSVNM-ENKDVLTLSCIPKKI 520 >UniRef50_UPI000197326E probable transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197326E Length = 573 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 192/593 (32%), Positives = 309/593 (52%), Gaps = 36/593 (6%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L ++ ++ F A ++E + D T Y K G + + ++ V+ Sbjct: 4 LEDMRSAVEHFVSAAAEAFRVEAAVFDNESNLFFCTPTYLKKKGNAV--HYAFIQDVIVN 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 +VT+ P C GC E+C + + GVIS A T E Q+ +S + Sbjct: 62 G-NVLVTEPGKMPACIGCRFNEHCPATMEILCCIHSGTEVAGVISFTAFTKEGQKRVSAH 120 Query: 130 LREFSDYVRHISTIFVSKL--LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + + + +S++ L L D G + + ++ +Q +L+ D V N Sbjct: 121 TDIYLNAITKLSSLIGEYLQQLSDDGSAADTINLIENLMALYEQPLLLTDPNGVVLRYNS 180 Query: 188 TALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDD--KSELIIGQLHNIQGRQ 245 A K L K + F+ + I S +D + ++ IG+ + Sbjct: 181 LAAKIL---------KFCNVSATSLRQIFSEDTARKITSGNDLYEKKVSIGENTAKVTTR 231 Query: 246 LFLMAFHQSHTSFSVAN-----APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 H ++N + ++L+G + ++++I R+A SP+ +++ G Sbjct: 232 SIYSGDHIHSILVRISNEFYESQAESGSFQKLIGSSKEFSHIQKMIKRVADSPTPILITG 291 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 E+GTGKE+VAR+IH+ S R PF+AINC++IPE L ESELFGY +G+FTGA GK G Sbjct: 292 ETGTGKELVARSIHEQSRRAKYPFVAINCSSIPENLFESELFGYEEGSFTGAKKGGKMGK 351 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 I+ A GTLFLDE+G+MPL +Q KLLR ++ E+ +G++ I +DIRI++ATN++LA Sbjct: 352 IELAQGGTLFLDELGEMPLSVQPKLLRVLQEYELERVGSTKKIHLDIRIVAATNRDLADM 411 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 I EGKFREDLFYR++VI I LPPLRER++DI + +L L R+ + I+ + ++ Sbjct: 412 IKEGKFREDLFYRISVINIKLPPLRERKDDIIPISKNYLELLHSRMSTPLRKISSEAEKL 471 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 + WPGN+REL N++EY N+ G+ ++ + LP +L++ E S+ E AHL Sbjct: 472 FLNYPWPGNIRELQNVIEYAANLC-DGDTLNPSDLPEHLISRLNLEFSEKQEPRSAHLP- 529 Query: 541 DDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + EKQ I+E L+ + KK++A LGI + TLYRK+ + +L Sbjct: 530 --------DSQEKQ-IQELLATYGHTLEGKKRIAAALGISLRTLYRKLNQMQL 573 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 173/513 (33%), Positives = 272/513 (53%), Gaps = 58/513 (11%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 TP++ ++ VG + + E Q+ + + + + Sbjct: 111 TPILHDNKVVGAVGVAQDITELQQ-----------------------IANELNSVNEMKS 147 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFE 213 T+ID G LVV+ E V +N+ + + + + IG+ I+ ++ Sbjct: 148 TLETIIDTGHDGYLVVNKEGYVITLNKAYAELIDINPEDAIGRHIKEVIPETELHLVSQT 207 Query: 214 SNFTHGHMQHIVSWD--------DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 G + + + +K IIG + + R + S Sbjct: 208 GKTQIGEVLRVKGREAVVMRYPINKDGRIIGAVSKVMFRDVNQFITSAKTVYSSQRRIKG 267 Query: 266 EPH--------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 EP ++ L+G+ M +LK + R+A PS+V++ GESGTGKE++A ++H S Sbjct: 268 EPEQWASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGS 327 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R PF+ +NCAA+PE LLESELFGYV+GAFTGA G+ G + AN GT+FLDEIGDM Sbjct: 328 NRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDM 387 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL++QAKLLR ++ +EI +G + V++R+++ATN+ L Q IA+ FREDL+YRLNV+ Sbjct: 388 PLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVV 447 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 + +P LRER +D++ LV YFL + G G++ D +E+ + WPGN+REL N++ Sbjct: 448 TLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVV 507 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E N+V G +ID LPP L G +++ S++ + + LE++EK+ I Sbjct: 508 ERAFNLV-DGHIIDVMHLPPYLQKFGKSKRH----------SINKSLPSLLEQVEKEAIA 556 Query: 558 EALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 +ALS + +K Q A LGI A LY+KI +Y + Sbjct: 557 DALSVTNGNKMQAAKILGISRAWLYKKIAQYGI 589 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 9/129 (6%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFESNFTHGHMQH 223 +++ + V+ VD ++ N + V +G+ + P+T H Sbjct: 35 VLNAIYNVVIAVDYSGKIIVYNHGCERLFKVPAEKAMGRFVSEVVPMTGLLKVLKTGNSH 94 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLK 283 I + + G I R L H + +V A D ++Q+ E + ++K Sbjct: 95 I-----GRKFVQGNSLYIVNRTPIL---HDNKVVGAVGVAQDITELQQIANELNSVNEMK 146 Query: 284 RLISRIAPS 292 + I + Sbjct: 147 STLETIIDT 155 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 171/595 (28%), Positives = 298/595 (50%), Gaps = 56/595 (9%) Query: 21 ARMLASVLQLEVEIV---------------DENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 A LA++L+ E++ D ++ G F G ++ +LR Sbjct: 77 AEELAAILEHNAELILVARSIMENLLAYNPDGHINLTDAQGVTLHFCGADMTPVGSILRE 136 Query: 66 -VLETK-TEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQD---RCVGVISLIAVTH 120 VL T T + + + R + G + K + R++ ++D + +GV++L A Sbjct: 137 EVLGTNCTARCLIEQRLVYVLSGENWKFDLRKRHRQCAAAPVRDASGQLIGVLTLTATPD 196 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 H ++ ++ V + + +LL +Q ++++ +++GV+V D Sbjct: 197 NFNAHTLGTVQAAAEAVGQ--QLMLRRLLAEQ----------QSILETLNEGVIVCDRHG 244 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRP----LTFESNFTHGHMQHIVSWDDKSELIIG 236 R++ +N+ A + + + + +P L +Q + +I Sbjct: 245 RIKTLNRYARQIFSGLDPDAGTIDVLLQPQGASLLTMPFCNDRELQFMPDGVQSIPCLIS 304 Query: 237 QLHNIQGRQLFLMAFHQSHTSFS--VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 + G ++ + +Q + + V + + G ++Q + + + S Sbjct: 305 LMPAPDGGRVLSLRENQRIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDS 364 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ A+AIH S R+ + FIA+NC A+P L++SELFGYV GAFTG+ Sbjct: 365 TVLLTGESGTGKELFAQAIHNASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRR 424 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 G G + A+ GTLFLDEIG+MPL Q LLR ++ E++ IGA++P++V++RII+AT+ Sbjct: 425 GGSPGKFELADGGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATH 484 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 NL + +G FR DL+YRLNV+ + +PPLRERQEDI LV+ F+ RL + P ++ Sbjct: 485 CNLLDAVEKGAFRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQVS 544 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 P+ + L+ WPGN+REL NL+E +VN+ G ID LP +++ Sbjct: 545 PEAMRCLQAWHWPGNVRELENLVERMVNLC-EGLEIDRQDLPDDMVQRQQPPVQLP---- 599 Query: 535 EAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYE 588 +L+E E+Q + + + +H + +Q A LGI LY K+ +++ Sbjct: 600 ------------SLQENERQHVLQVVAEQHGNLRQSAQLLGISRTALYNKLNQWQ 642 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 266/485 (54%), Gaps = 30/485 (6%) Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 E ++ L++ D +++I + +E P + + ++D +++G++ +D Sbjct: 44 EIEKTDKKTLKQIIDDLKNIPKVLKVHPIE-IMPYEQKEQQLRAVLDTVNEGIIAIDSHG 102 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPL-------TFESNFTHGHMQHIVSWDDK--- 230 + NQ+ + G+ +IG+ + T ++ ++ + + I++ + + Sbjct: 103 TISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLH 162 Query: 231 ----SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 I +L NI G L + P ++ MR + + Sbjct: 163 YLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMA 222 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 ++A + ++V++ GESGTGKE+ ARAIH S RR KPF+ +NCAA+PE LLESELFGYV+ Sbjct: 223 KKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVE 282 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAFTGA GK GL++ A+ GTLFLDEI ++P LQAKLLR ++ ++ IG I VD Sbjct: 283 GAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVD 342 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 IRII+ATN+NL + EGKFREDL++RLNV P+ +PPLRER EDIE+L ++FL+ +R Sbjct: 343 IRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRR 402 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 G Y I + + L+ + WPGN+REL N++E + + G VI++ + Sbjct: 403 GIQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDG-VIEAKDI----------- 450 Query: 527 QSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 + + + + A+ ++EK++I AL ++ S +Q A LG+ TL KIKK Sbjct: 451 ---ILDNPQNTYFVARTLEEAVNQVEKELIERALKQYPSIRQAARSLGVTHTTLRNKIKK 507 Query: 587 YELLN 591 +L N Sbjct: 508 LKLTN 512 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 167/563 (29%), Positives = 270/563 (47%), Gaps = 51/563 (9%) Query: 64 RHVLETKTEKVVTQSRFDPLCEGCDSKENCREK-----AFLGTPVILQDRCVGVISL--I 116 + + ++ K C + P + + I Sbjct: 17 DYSIRVG-AIIINNLGEIQFMSDECRKILCAREYSYNHIQQLIPCFNMKDLINSSTKRKI 75 Query: 117 AVTHEQQEH--ISDNLREFSDYVRHISTI-FVSKLLEDQGPGDNISKIFATMIDNMDQGV 173 + +++ IS +++ + + + E+ + KI + +++ G+ Sbjct: 76 KLNNKKLNMEVISLKEECMKEFLITLIDANVIDVMYEELKAKEKNLKILSFILELAYDGL 135 Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHIVS 226 +V+D + +N+T LGV Q IGK + R + +Q + Sbjct: 136 VVIDKYGYITMINKTYADFLGVDQERSIGKHVTEVIESTRMHIVAKTGIAETAQLQKVKG 195 Query: 227 WDDKSELI----IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP--------------- 267 + I G+L + G+ LF + N +E Sbjct: 196 KYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYKKIRNIENEYKKYKGQFDESNSASY 255 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++G+ + + K L + A + S+V++ GESGTGKE+ A AIH S R FI + Sbjct: 256 SFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKL 315 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP LLESELFGY GAFTGA GK G + A+ GT+FLDEIGDMPL +QAKLLR Sbjct: 316 NCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLR 375 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ RE+ IGA+ ++D+R+ISATN++L + I EG+FREDL+YRLNV+ + +PPLRER Sbjct: 376 VLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRER 435 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI++L Y L +++LG + + + L ++W G +R+L N++E VN+V Sbjct: 436 REDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNLVEHN 495 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SK 566 E+I+ P N+++N + D + ++EK +I E L N +K Sbjct: 496 EMIEPKHFPGNIVSNKYIVE-------------DSDLNKLINQVEKDIILETLIYCNWNK 542 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 A +L I +LY KI K+ + Sbjct: 543 TLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 171/539 (31%), Positives = 277/539 (51%), Gaps = 30/539 (5%) Query: 62 LLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVT-H 120 ++ + ++ R LC C + C L P G + Sbjct: 47 IIEEAKRQNSAIMINSPRQHHLCAQCPVIDMCSLALELFFPFAENSLTSGSGLCLQFPLE 106 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI--SKIFATMIDNMDQGVLVVDD 178 L ++ +++ + F + E + ++ ++ + +G++++D+ Sbjct: 107 SLTSMQVMGLNQWLRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDE 166 Query: 179 ENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL 238 + ++ +N+ A + ++ I ++ Sbjct: 167 QKKISTLNERAEQL-------------NLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKV 213 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDE----PHIEQLVGECRVMRQLKRLISRIAPSPS 294 N + F+ A + +++ P P ++G+ ++++ +I ++A S S Sbjct: 214 KNFYQDKKFIGAICHTQNFDTISPLPQRTQRSPVFPGIIGKGPALQKILEIIKQVAKSES 273 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ A +IH+LS R + PF+AINCAAIPE LLESELFGY +G+FTGA Sbjct: 274 TVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESELFGYEEGSFTGARK 333 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK G ++ AN GTLFLDEIGDMPL LQAKLLR I+ + I P+G S P+ +++R+I+AT+ Sbjct: 334 GGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATH 393 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + I G FREDLF+RLNVIPI +PPLR+R ED ELL+HY+L + L + ++ Sbjct: 394 RNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILS 453 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 ++ L K+ WPGN+REL NL+EYLVN+ ++I LP + E + Sbjct: 454 YAALQQLVKYHWPGNIRELENLVEYLVNIHNQ-DIISPEDLPITIQQPIKEENQPIGIQP 512 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + +G + E+ + L+R KK+ A LG+ +ATLYR+IKKY+L Sbjct: 513 VEPQTRKSSGQRSQAEL-----IQMLNRFGWHTDGKKKAAAALGVSLATLYRRIKKYKL 566 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 179/514 (34%), Positives = 277/514 (53%), Gaps = 44/514 (8%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 V + ++ VI L+ + ++ +D ++ +++ F Sbjct: 99 VPVLNKEGKVIGLLCKAKMVTTLFRHSEQDLTDL---------EHTAKELETVKALNETF 149 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----RFRPLTFESNFTH 218 T+++ + G++VVD++ ++ VNQ L + +IGKPI L + Sbjct: 150 DTVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGL 209 Query: 219 GHMQHIVSWDDKSELII-------GQLHNIQGRQLFLMAFHQSHTSFSV----------- 260 +++ K ++ G++ G+ +F + V Sbjct: 210 SQTSEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKVTFFQ 269 Query: 261 ----ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 N + ++ +V E M++LK IS +A S S+V++ GESGTGKE VA AIH Sbjct: 270 EELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLG 329 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R PFI +NCA+IPE L+ESE+FGYV GAFTGA+ NGK G I+ A+ GTLFLDEIG+ Sbjct: 330 SDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGE 389 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 MPL LQAKLLR ++ REI +G++ I+V+IRI++ATN+ L+ IA+G+FR+DL+YRLNV Sbjct: 390 MPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNV 449 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 I + LPPLRER EDIE L H+F+ L + GI P+ + L ++ WPGN+REL N+ Sbjct: 450 INLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELENV 509 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E VN SG +I+ LP +++ T + + + H L ++E+ MI Sbjct: 510 VERAVNYTRSG-LIELIHLPHQIISGNTALGQVMNKKTIRHQD-------RLGQIERDMI 561 Query: 557 REALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 AL + +K + A L + + LY K+ KY+L Sbjct: 562 AAALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDL 595 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 163/506 (32%), Positives = 258/506 (50%), Gaps = 33/506 (6%) Query: 100 GTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 P+ R +GV+++ + H + + + KL E+ + Sbjct: 155 AAPIHDPDGRIIGVLNMSGPYEKVHSHTLGMVVSAVKAIE-----YQLKLHENAEKNVMM 209 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ--------NNIIGKP--IRFR 208 + +NM +G+L++D + ++ N K + Q +++ P Sbjct: 210 QRFLEATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLEEKKLDDLFNDPSICSNH 269 Query: 209 PLTFESNFTHGHMQHIVSWDDK--SELIIGQLHNIQGRQLFLMAFHQSHTSFS-VANAPD 265 PL ++ H ++ + ++ I + G + + + + ++ Sbjct: 270 PLHLQNQELHLSVKPSNAVHHVLVDKIPIYEKKERIGSMIIVKEIEKVRQFVNHLSGNQA 329 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + ++G+ + A + S+V+++GESGTGKE+VA+AIH S RRNKPFI Sbjct: 330 KITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFI 389 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AINC IP LL SELFGYV GAFTGA G G + AN GTLFLDEIG+M L +Q L Sbjct: 390 AINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLL 449 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR I+ +E++ IG I VD+RII+ATN++L + + +G FREDLF+RLNV+PI LPPLR Sbjct: 450 LRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLR 509 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+EDI LLV +F+ + +P I D +E L ++ WPGN+REL N++E ++N Sbjct: 510 ERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCT 569 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 V+ + LP + + Q + + + E++KQ I EAL + N Sbjct: 570 K-PVLTAADLPEEIFQPSCSSQ------------VRENVDISRNEIKKQSIIEALKQCNG 616 Query: 566 K-KQVADELGIGIATLYRKIKKYELL 590 + A LGI +T YR++ K+ + Sbjct: 617 NISKAARYLGISRSTFYRQMDKWNIW 642 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 167/448 (37%), Positives = 254/448 (56%), Gaps = 24/448 (5%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTF----------- 212 ++D++ GV+ VD E V + N+ + G+ ++ ++G+ + P + Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTPL 91 Query: 213 ----ESNFTHGHMQHIVSWDDKSELI--IGQLHNIQGRQLFLMAFHQSHTSFSV--ANAP 264 F H + +IV + ++ + +I ++ + + N Sbjct: 92 LGVRTRVFDHVVVSNIVPVYHQGRMVGAVSVFRDITEVLALSRQLDEARNTIDLLRENLT 151 Query: 265 DEPHIEQ--LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 P E ++G+ +++ + A S V++ GESGTGKEV+AR IH S RR++ Sbjct: 152 AAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNRSARRSQ 211 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 P IA+NCAAIP LLESELFGY +GAFTG+ G+ GL Q A+ GTLFLDEIGDM LQ Sbjct: 212 PLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGDMDPGLQ 271 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLRA+++ EI +G ++ +V++RIISATNQNLAQ + E +FREDL+YRL VI + LP Sbjct: 272 AKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRVIHLVLP 331 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+ D+ L + + + RLG +P + L + +PGN+REL N++E V Sbjct: 332 PLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENVVEQAV- 390 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-TALEEMEKQMIREALS 561 V+ G+VID LPP+++ T + L L+D G LEE+E++++ L Sbjct: 391 VLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVLEAGLR 450 Query: 562 RHNSKKQVADELGIGIATLYRKIKKYEL 589 +SK ++A LG+ ATLYRK+ +Y L Sbjct: 451 AFDSKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 167/460 (36%), Positives = 258/460 (56%), Gaps = 20/460 (4%) Query: 146 SKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 L + + + ++ + VLVVD + + N +A + Q +IGK + Sbjct: 4 RDLERARQERLKLLREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHV 63 Query: 206 -------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH------NIQGRQLFLMAFH 252 + I+S +LH ++G LFL Sbjct: 64 TEFVQSASLLQYIKQGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLTKPI 123 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + ++ ++G + LK + +IA S S+V++ GESGTGKEV+A++ Sbjct: 124 LLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQS 183 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH+LS R PF+AINCAAIPE LLESELFGY +GAFTGA GK G + A GTLFLD Sbjct: 184 IHRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLD 243 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGDMPL LQAKLLR ++ R I +G + I+VD+RII+AT+++L IA +FREDL++ Sbjct: 244 EIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYF 303 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIP+ +PPLRER+ED+ L+ Y+++ +RLG + ++ + + WPGN+RE Sbjct: 304 RLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIRE 363 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT--ALEE 550 L N++EY+VN+ G+++ + LP ++ ++ D+ E + ++ + + E Sbjct: 364 LENMVEYIVNL-EIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINE 422 Query: 551 MEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 +E+Q+I +AL R K++ A+ LGI +ATLYRK++K Sbjct: 423 VEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 259/468 (55%), Gaps = 38/468 (8%) Query: 146 SKLLEDQGPGDNISKIF-------ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN 198 + +E+Q ++ T+I +M +G+++VD + +NQ + LGV Sbjct: 195 ANAIENQLQLHRVNTKLYASYKYSDTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAR 254 Query: 199 NIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ----------LHNIQGRQLFL 248 IG I + ++ ++ +++++K ++ G L + G+ + Sbjct: 255 EAIGLHIS--KMFGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGA 312 Query: 249 MAFHQSHTSFSVA-----NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 ++ + +S + ++++G+ M++ + + R + S S+V++ GESG Sbjct: 313 VSVLRPRSSSKRSRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESG 372 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE++A+ IH S R +PF+A+NCAAI E LLESELFGY +G+FTGA G+ G ++ Sbjct: 373 TGKELIAQGIHNASSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEM 432 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 AN GTLFLDEIGDMPL +Q KLLR ++ R I +G+S I +D+RII+AT+QNL Q + E Sbjct: 433 ANGGTLFLDEIGDMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQE 492 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FR+DL+YRLNV+PIT+PPLRER +D+ L + + + R G I+ + + Sbjct: 493 GCFRKDLYYRLNVLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQS 552 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E +N+V G+ + + ++ D+ V Sbjct: 553 YDWPGNIRELENVIERAMNMVDDGDALTAEMI-------------DLDPVELPADHAIPD 599 Query: 544 GGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 G L+E+E +M+ AL + + LGI T+YRKIK+Y+++ Sbjct: 600 GVRPLKEVEMEMVVRALEMSRGNIVHASSLLGISRNTIYRKIKEYDIV 647 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 172/572 (30%), Positives = 288/572 (50%), Gaps = 55/572 (9%) Query: 63 LRHVLETKTEKV-----VTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIA 117 L K V V + + L C ENC+ F +P L+ + + Sbjct: 13 YLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCK---FKESPFPLEHELLN----MC 65 Query: 118 VTHEQQ---EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 E + E I + + D V + T+ +S LL+ + + +I++ G+ Sbjct: 66 FNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIY 125 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGK------------------------PIRFRPL 210 V D + +N+ + G+ ++ +IG+ P+ Sbjct: 126 VSDCTGKTLRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQK 185 Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG-----RQLFLMAFHQSHTSFSVANAPD 265 ++ + + ++ + +I R+L + H + + Sbjct: 186 IKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKIVELQE 245 Query: 266 --------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + + + + +M+ + R+A + ++V+++GESGTGKEV+AR IH S Sbjct: 246 KLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNS 305 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++K F+ +NC AIPE L+ESE FGY GAFTGA GK G + A GTLFLDE+G++ Sbjct: 306 LRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGEL 365 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL LQ KLLRA++ +EI+ +G++ PI+VD+RII+ATN+NLA+ + EGKFREDL+YRLNVI Sbjct: 366 PLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVI 425 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 I +PPLR+R+E+I + FL + GS +V+EIL++++WPGN+REL N++ Sbjct: 426 SIEIPPLRKRKEEIIPMAMEFLTRINEKYGSE-KKFTREVLEILKEYKWPGNIRELENVI 484 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E+ V S + I+ LP +L + + + A+ +EK++I Sbjct: 485 EHAYVV--SQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIE 542 Query: 558 EALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 +AL ++ ++ + A LG+ +T+ RKIKKY + Sbjct: 543 DALLKYGTETRAASVLGVNQSTISRKIKKYNI 574 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 162/499 (32%), Positives = 270/499 (54%), Gaps = 27/499 (5%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 P++ + + V V+ L E++ D ++ + ++ +V++ LE + +I Sbjct: 65 PIVREMKVVSVLLLRPKQGEKERFARDI--QYLKLLSELACQWVAEKLERETWQKKFGEI 122 Query: 162 F---ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLT 211 +I ++ + +VD + R+Q +N+ + ++G+ I ++ + Sbjct: 123 HLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKITQYITKEKWESIK 182 Query: 212 FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQ 271 +Q + I + N QG +++ T H E Sbjct: 183 SGKEKDETVVQVPRIKGEAYFATIQLVKNKQGIVSYMILLKSKKTEKPEQAGRRLYHFED 242 Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G +++Q + R++ S ++M+ GESGTGKE+ A+AIH S R+N+PF+A+NCAA Sbjct: 243 ILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKNQPFVALNCAA 302 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IPE LLESELFGY KGAFTGA K G + AN GTLFLDEIGDM L LQAK+LR ++ Sbjct: 303 IPENLLESELFGYEKGAFTGAEKE-KPGRFELANHGTLFLDEIGDMSLYLQAKILRVLQE 361 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + + IG++ ++D+RII+AT++NL + I +G+FREDL+YR++VIPI +PPLR R+ED+ Sbjct: 362 KTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIPPLRARKEDL 421 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 +L+ +F+ ++ L +A + ++ L ++ WPGN+REL N++ + V + G+ + Sbjct: 422 PILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVEL-QIGDTVT 480 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKK 567 LP +L + V H +EK+ + E L R+ KK Sbjct: 481 LESLPSSLQRGAKSFPPSVKPKRTNHYQT---------RLEKRKVLELLERNGWSTEGKK 531 Query: 568 QVADELGIGIATLYRKIKK 586 + A +LGI +ATLYR +KK Sbjct: 532 KTAADLGISLATLYRYLKK 550 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 158/474 (33%), Positives = 241/474 (50%), Gaps = 41/474 (8%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFR 208 N S + T++D M + V +VD N VQ N+ A + + ++G + R Sbjct: 68 QNQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIR 127 Query: 209 PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN------ 262 L T + + D LI +G + ++ Q T N Sbjct: 128 LLDALRQGTSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHT 187 Query: 263 --------------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + G ++ ++A + ++V++ GESG GKE+ Sbjct: 188 TAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKEL 247 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A+AIH+ S R KPFIAINC AIP L ESELFGY GAFTGA GK G ++ A+ GT Sbjct: 248 FAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGT 307 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIG++PL LQ KLLRA++ R+ +G + PI V+ RI++ATN+ L Q +A+G+FRE Sbjct: 308 LFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFRE 367 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV + +PPLRER+ED+ LV F+H ++ P I+P+V++ L ++ WPG Sbjct: 368 DLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPG 427 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+R+L N++E L +++ VI LP + ++ + + + Sbjct: 428 NIRQLRNVIERL-SILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPI 486 Query: 549 ------------EEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 EK+ I AL R + +KK A+ LG+ TLY K+KK+ + Sbjct: 487 IRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNI 540 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 185/643 (28%), Positives = 285/643 (44%), Gaps = 106/643 (16%) Query: 18 QRFARMLASVLQLE----VEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEK 73 Q FA M ++ + V + + R+ G +GR+ + V+ Sbjct: 144 QVFASMADGLIVTDAHDVVTVFNPAAERIMGM-RASDVIGRKA-------KAVIAGSRMH 195 Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLG--TPVILQDRCVGVISLIAVTHEQQEHISDNLR 131 +V ++ L ++ + L TP+++ + G +++ Sbjct: 196 IVAETGQPEL----GRRQMIGDAVILTNRTPIVVDGQVKGAVAV---------------- 235 Query: 132 EFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK 191 IS + K+ + + + +++++ G+ VVD E V +VN + Sbjct: 236 -----FEDISAL--EKVTHELHEVKELKERLQLVLESVQDGICVVDREGCVTYVNPAYAR 288 Query: 192 TLGVVQNNIIGKPIR--------------FRPLTFESNFTHGHMQHI-----VSWDDKSE 232 + + ++IG+ +R +P+ G + I + D + Sbjct: 289 IVNGRREDLIGRDVRNLSPRGARRQALETGKPVLGHLAQKDGDVTVIADAYPIIVDGEVT 348 Query: 233 LIIGQLHNIQGRQLFLMAFHQS-------HTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 ++ + + Q ++ A P + +G+ +R + Sbjct: 349 GVVSIVKTLTDVQTLAEKLNRMAARAEYLEQELRRAKKPGGA-FARFIGQSGKVRDALAM 407 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 + A P++V++ GESGTGKE+VA IH+ R PFI +NCAAIPE LLESELFG+ Sbjct: 408 AEKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHE 467 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA K G + A+ GTLFLDEIG++ +QAKLLR ++ +EI IG V Sbjct: 468 KGAFTGAIKR-KLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTV 526 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D++II+ATNQ+L + +AEG+FREDL+YRLNVIPI LPPLRER+EDI LLV +FL R Sbjct: 527 DVKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGRE 586 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTT 525 G GI D +E L + WPGN+REL+NL+E V + G I + LP L Sbjct: 587 QGKALRGIHSDALEALMHYSWPGNVRELANLIER-VVTLSDGPWITDSDLPTYLRERAAE 645 Query: 526 EQSDVTEVSEAHL------------------------------------SLDDAGGTALE 549 E + + E DA E Sbjct: 646 ENHEGRPLEERPAGGRYGAGERGYNGREHKIGRSVGGISGSLFRENRWEEQGDAPLLTWE 705 Query: 550 EMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 E+Q+I AL RH S A LG+ T+ K +KY + Sbjct: 706 AYEQQIITLALRRHGSFNAAAKALGLTHKTVAAKARKYGIDKN 748 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 165/545 (30%), Positives = 272/545 (49%), Gaps = 36/545 (6%) Query: 69 TKTEKVVTQS----RFDPLCEGCDSKENCREKAFLGTPVILQDR-CVGVISLIAVTHEQQ 123 T V+ + + C C G P++ +D+ +G++ + + Sbjct: 137 VGTAVVLKKPVQVSGKEHYCRK-HHSWTCS-----GAPILNEDKQVIGILEMSGPVEKTH 190 Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 H + + + ++ + +S + + + G++V+D + + Sbjct: 191 LHTLGMVVAAVEAISD-----QLRIQQKNRELLLLSNRLGYIYNTVSDGIMVIDMQGIIT 245 Query: 184 FVNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNFTHGHMQHIVSWDD------K 230 +N + LG I+G P++ +S + + + + Sbjct: 246 QINPAVERILGQNSRKIMGIPVKELFEPGQRVEEMLDSGRDFSYSELTLGIGEAVQCLVS 305 Query: 231 SELIIGQLHNIQGRQLFLMAFHQSHTSF-SVANAPDEPHIEQLVGECRVMRQLKRLISRI 289 + I+ + + G +F+ + + + A H ++G+ + + ++ R+ S Sbjct: 306 GKAIMDEQGKVNGGVIFINPINHIKSLVNRFSGAQASLHFSDIIGQSQELSRVVRIASLA 365 Query: 290 APSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAF 349 A S S++++ GESGTGKEV A+AIH S RR+ PFIA+NC AIP +LL SELFGYV GAF Sbjct: 366 ASSESNILLEGESGTGKEVFAQAIHNASSRRDAPFIAVNCGAIPRELLGSELFGYVDGAF 425 Query: 350 TGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRI 409 TGA G+ G + A+ GT+FLDEIG+MPL Q LLR ++ R + IG I VD+R+ Sbjct: 426 TGARRGGRPGKFELASGGTIFLDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPVDVRV 485 Query: 410 ISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSV 469 I A+N+ L + + +G FR DLFYRLNVI ITLPPLR+R+EDI LL H+FL +++LG Sbjct: 486 ICASNRKLHEEVEKGNFRRDLFYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQKLGVK 545 Query: 470 YPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD 529 P + +V+ L+ + WPGN+REL N++E +VN+ I LP + + + Sbjct: 546 TPQVETEVIHSLQDYDWPGNVRELQNVVERMVNIAEESR-ISREHLPQEISHPAARSLKE 604 Query: 530 VTEVSEAHL----SLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKI 584 + ++ L + +E E++ I L H QVA LG+ T+YRKI Sbjct: 605 LANCEDSQLLSLSTERRKRKEMEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKI 664 Query: 585 KKYEL 589 K+Y + Sbjct: 665 KQYRI 669 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 262/466 (56%), Gaps = 38/466 (8%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFR 208 +++ T++D +GV+VVD V+ +N+ + LG+ + + IGK + R Sbjct: 110 HRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLH 169 Query: 209 PLTFESNFTHGHMQHIVSWDD--------KSELIIGQLHNI-----------------QG 243 G++Q I + +IG + + Sbjct: 170 ICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELS 229 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 R+ +++ S A A +E+++G + +K++I R A PS+V++ GESG Sbjct: 230 REASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESG 289 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKEVVARAIH+ + PF+++NCAAIPE LLE+ELFGY GAFTGA GK G Q Sbjct: 290 TGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQL 349 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEIGDMPL +QAK+LR +E +++ +G S +VD+RII+ATN+ L + + + Sbjct: 350 AHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRD 409 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYRLN+I I LPPLRER+ DI L+ + + R+ G V A + +E+L Sbjct: 410 GTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLIN 469 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E+L+++V GE I+ LP L +T VT + + ++ D Sbjct: 470 YSWPGNIRELVNVVEWLISMV-EGENIEREHLPAYL----STIHPSVTPMPDGGANIADQ 524 Query: 544 GGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYE 588 + + E++ I AL + + +K + A LGI +TLY K+KKY Sbjct: 525 WKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 168/504 (33%), Positives = 270/504 (53%), Gaps = 29/504 (5%) Query: 100 GTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 + ++ D +I + +T +Q L V+ I K+ + Q Sbjct: 141 CSSSVVHDEDGNIIGCLNLTGRRQLAHPHTLGLVVAAVKSIENHL--KVKKTQNELVKTY 198 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----RFRPLTFES 214 + + D+++ G+ VD + ++ +N++A L + + ++I K + ++ + Sbjct: 199 QYLNKITDSVNLGIFAVDTKGIIKAINKSACDMLHINEEDVINKNVDTVLDSWKHILQRL 258 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ--------LFLMAFHQSHTSFSVANAPDE 266 + + + DK + ++ I+ + +F + + N + Sbjct: 259 RNGQSYEDEEIMYSDKKKRFNINVYPIKDKNSNITGMVGIFKDIQNVYNLVNKYINRTAK 318 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 + ++G+ M++LK I I+ SPS+V++ GESGTGKE++A++IH S RR+K F+A Sbjct: 319 YTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHNNSNRRSKSFVA 378 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INC AIP+ L+ESELFGY +GAFTGA G G + AN GTLFLDEIG+MPL +Q LL Sbjct: 379 INCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEMPLDMQVNLL 438 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ I IG + + VD+RII+ATN+NL + I +G FREDL+YRL+VIPI +PPLRE Sbjct: 439 RVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRE 498 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R DI +L+ +FL + +LG + P I ++ E L + WPGN+REL N +E +VN+ + Sbjct: 499 RNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWPGNVRELENCIENIVNMNGN 558 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 + T + DV S+ L D +LEE+EK+ I +++ Sbjct: 559 ----------TSFNFENRTIKKDVNCYSDVSLEYDMC---SLEELEKRAISICINQCGGN 605 Query: 567 -KQVADELGIGIATLYRKIKKYEL 589 + LGI +TLY KIKKY + Sbjct: 606 ISKACRILGINRSTLYIKIKKYNI 629 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 151/454 (33%), Positives = 233/454 (51%), Gaps = 34/454 (7%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII-GK------PIRFRPLTFES 214 F T++D +++ + +D +RV N A + V I+ G+ +R E Sbjct: 133 FETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKILSGRIEDFFSNLRISNCMHEK 192 Query: 215 NFTHGHMQH----------IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP 264 G D ++I G ++ + + S V Sbjct: 193 KEVRGLYHQPCEGAHVLINSAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQVKLLE 252 Query: 265 DEPH--------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 E +L+G +++L +I+ + ++V++ GESGTGKE++ARAIH+ Sbjct: 253 QEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQN 312 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R PFI +NC AIP L ESELFGY GAFTGA GK G+ + AN GTLFLDE+G+ Sbjct: 313 SPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGE 372 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 MP+ +QAKLLR ++ +G S + V++R+++AT++NL I +FREDL+YRLNV Sbjct: 373 MPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNV 432 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 + + +PPLR+R+EDI LVH F+ ++ I P V+ + WPGN+REL N Sbjct: 433 VALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNA 492 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E LV V+ G++ID LP NL N +++ E EKQ+I Sbjct: 493 VERLV-VLTDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMNVAV-------EAEKQLI 544 Query: 557 REALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 + L + ++ + A LGI +TLY K+++ + Sbjct: 545 LKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 164/560 (29%), Positives = 272/560 (48%), Gaps = 38/560 (6%) Query: 46 GAYGKFLGRQLSGNSRLLRHVLETK--TEKVVTQSRFDPLCEGCDSKENCREKAFLGT-- 101 G F G ++ +L L+ T + ++R + + R++ Sbjct: 120 GVTLHFCGLDITPVGSVLLESLQGTNCTGLAIAENRLVYVLSEENFGTWLRQRRMHCAAA 179 Query: 102 PVI-LQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 P+ L R + +++L A H ++ ++ V + + LLE+Q Sbjct: 180 PIRDLGGRTLAILTLTAEPGRFHFHTLGTVQAAAEAVSR--QMALQALLEEQ-------- 229 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI------IGKPIRFRPLTFES 214 T+++ +++G++V+D+ ++ +N+ A + V ++ + +G+ R L + Sbjct: 230 --RTLLEVLNEGLVVLDERGCIKALNRYARQLFRVERDLLGAPFHRLGRGERVDSLLLRA 287 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA----NAPDEPHIE 270 + + + D + L R +++ ++ + E Sbjct: 288 DEGLHDLDITLQLHDGTHLSCLASVCPTERGGRIVSLRENRRIREITRRIIGTQASYTFE 347 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++G R M+ RL + S+ +++GESGTGKE+ A+AIH S R PF+A+NC Sbjct: 348 TILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNASERCGGPFVAVNCG 407 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP L++SELFGY++GAFTG++ G G + A+ GT+FLDEIGDMP QA LLR ++ Sbjct: 408 AIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMPFDAQASLLRVLQ 467 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 E+ +GA VD+RI++ATN+NL++ +A+G FREDL+YRLNV+ +++PPLR R+ED Sbjct: 468 EGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSLSVPPLRMRRED 527 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I L +FL R L GI + ++IL H WPGN+REL N +E N+ GE+I Sbjct: 528 IPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIERAANL-AGGELI 586 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQV 569 ++ LP L A L E I AL + + Sbjct: 587 EAEDLPLELAQVARRAAEPAVRCGAA---------MDLGSHEMNAIAAALRECRGNVRLA 637 Query: 570 ADELGIGIATLYRKIKKYEL 589 A LG+ LY K+ +Y L Sbjct: 638 AKRLGVSRGGLYNKMNRYGL 657 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 161/470 (34%), Positives = 251/470 (53%), Gaps = 40/470 (8%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 ++ + + +++N +G++V+DD+ + +NQ L +GV ++IGK I Sbjct: 245 EVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDVIGKKIN 304 Query: 207 --FRPLTFESNFTHGHMQHIVSWDDKSELII---------GQLHNIQGRQLFLMAFHQSH 255 + G Q +W K I G++ + LF Sbjct: 305 DISPNSSLPQTLKSGKAQFGETWHLKGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAKM 364 Query: 256 TSFSVANAPD---------------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 + V + + + ++GE M++ K L R + + S+++++G Sbjct: 365 FAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILG 424 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKEV + AIHK S R N P+I +NCAA+PE LLESELFGY +GAFTGA GK G Sbjct: 425 ESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGK 484 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A+ GT+FLDEIGDM L +QAKLLR ++ RE+ +G + PI+VD+RII+ATN++L + Sbjct: 485 FELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKM 544 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + E KFR DL+YRLNV+ I LPPLRER+EDI + + +RLG+ G+ P+ + Sbjct: 545 VMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITH 604 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L + WPGN+REL N++E + + ++ L P ++ T L Sbjct: 605 LCAYDWPGNIRELENILERAIVICDEAWILPKHLALPGVMETIT-------------LGA 651 Query: 541 DDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 + AL+ E++++ + L R +K Q A LGI + LY+K+ KY + Sbjct: 652 EQTLEYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 I+ + V+ +D + R+ F N +A K LG ++GKPI+ Sbjct: 147 IEAVHNAVVAIDAQGRIVFFNPSAEKLLGFHAEEVLGKPIK 187 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 183/612 (29%), Positives = 306/612 (50%), Gaps = 81/612 (13%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRL--LRHVL 67 L+ I +I + + V I ++ RV A K LG+ ++ L VL Sbjct: 11 LLNILDSIHNAIVAIDEEGK--VIIFNKASERVFNYPA-KKALGKNINEVLPFSGLNKVL 67 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLG--TPVILQDRCVGVISLIAVTHEQQEH 125 +T + K + ++ TP+ + + +G I + +E + Sbjct: 68 KTGESHI-------------GRKFKIGDNLYVVNRTPLYYKGKIIGAIGVAQEINELKN- 113 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + ++ + + T+++ +G +V+D + V Sbjct: 114 ----------------------IADELENVLALKQTLETILEAGQEGYMVLDLDKTVTHA 151 Query: 186 NQTALKTLGVVQNNIIGKPIRFR---PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 N+ G+ ++I+ KPI P E + ++ V + +++ + ++ Sbjct: 152 NKAIADLFGLKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGRQVVAFKYPIVK 211 Query: 243 GRQLF----LMAFHQSHTSFSVANAPDEPHIE-------------------QLVGECRVM 279 +L+ + F + ++A ++ + E +++G + Sbjct: 212 DYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTENKIIGNHPSI 271 Query: 280 RQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLES 339 +LK +I +IAP ++V++ GESGTGKE+VA A+H SGR FI +NCAAIPE L E+ Sbjct: 272 VRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFIKVNCAAIPENLFEA 330 Query: 340 ELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGA 399 ELFGYV+GAFTGA G+ G + AN GT+FLDEIGDMPL +QAKLLR ++ +E+ +G Sbjct: 331 ELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGD 390 Query: 400 SSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFL 459 ++++R+I+ATNQNL + I + KFREDL+YRLNVI + +P LRER ED+ LL+ YF+ Sbjct: 391 RKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFI 450 Query: 460 HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL 519 + G+ GI+P+V++I + WPGN+REL N++E N+V G+VI+ LPP + Sbjct: 451 EKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLV-EGKVIEKKYLPPYI 509 Query: 520 LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA-LSRHNSKKQVADELGIGIA 578 L E+ L + LE EK++I+ A L +K + A+ LGI Sbjct: 510 LGE---------ELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQ 560 Query: 579 TLYRKIKKYELL 590 L++++K + LL Sbjct: 561 WLHKRLKYFNLL 572 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 170/520 (32%), Positives = 271/520 (52%), Gaps = 39/520 (7%) Query: 103 VILQDRCVGVIS--LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 + + + VI +I T E Q H+ + IS KL + + + Sbjct: 71 INYYGKTLSVIKTPIIEPTIENQCHLGNYY-----IFEDISDSV--KLKRELSNARSSAN 123 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFE 213 +++ G++++D + N + G+ + +GK + R + Sbjct: 124 AMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISEQEALGKHVTEVIENTRMHKVLET 183 Query: 214 SNFTHGHMQHIVSWDDKSELI----IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE--- 266 G +Q I + + + G++ + G+ LF + + A +E Sbjct: 184 GKPEIGEIQKIKGCEMVATRVPIYEEGEIVGVLGKVLFRDIKEVKALAERLDAATNELDY 243 Query: 267 ------------PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 + E +VG + + + K + + S S+V++ GESGTGKE+ A AIH Sbjct: 244 YKGEVRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIH 303 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S RR FI +NCAAIPE LLE+ELFGY KGAFTGA+ GK G + AN GT+FLDEI Sbjct: 304 DGSLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEI 363 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GDMP +Q KLLRA++ RE+ IG+ I +D+RII++TN+NL Q IA+ KFREDL+YRL Sbjct: 364 GDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRL 423 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV I +PPLRE ++D+E L+++ + +G G++ + +IL + WPGN+REL Sbjct: 424 NVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELK 483 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS--LDDAGGTALEEME 552 N++E +NV G +I +P LL E+ S++H + + ++E E Sbjct: 484 NVLERSMNV-AKGNIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAE 542 Query: 553 KQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 K I AL + +N+KK+ A+ L I + LY+K+++Y + + Sbjct: 543 KLAIETALKQTNNNKKKAAELLNIHRSGLYKKLEEYNISD 582 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGH 220 +F ++++ ++ ++V D+ N+++ N A +T + N++ G+ I + Sbjct: 1 MFDSLMNAINDALIVTDEHNKIECFNYKAEETFNISHNHL-GEKIEGIIFIPDDLKKSDT 59 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMR 280 + + G+ ++ + + + E + + ++ Sbjct: 60 ITEGKKESQRRINYYGKTLSVIKTPIIEPTIEN------QCHLGNYYIFEDI-SDSVKLK 112 Query: 281 QLKRLISRIAPSPSSVM 297 + A + +V+ Sbjct: 113 RELSNARSSANAMENVL 129 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 171/514 (33%), Positives = 266/514 (51%), Gaps = 65/514 (12%) Query: 100 GTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 +P+ + D+ +G IS+I + +S I K I+ Sbjct: 192 SSPLFINDKIIGAISVI---------------------QDVSDIIGMK---------EIN 221 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----------RFR 208 + F +++N + VD+ + ++N +K V +++IGK I F+ Sbjct: 222 EKFTKILENSQDMICFVDENGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFK 281 Query: 209 PLTFESNFTHGH-------MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS-- 259 T + H + D + + +I + + + ++S Sbjct: 282 EKTLLKDVIHKKNGINVISTIDPLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYY 341 Query: 260 ----VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 + ++G R ++ + + + + + S+V++ GESGTGKE++A+AIH Sbjct: 342 KNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHN 401 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 S R+NKPF+ +NCA+IPE LLESELFGY KGAFTGA K G A+TGT+FLDEIG Sbjct: 402 NSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAV-QSKPGKFAIADTGTIFLDEIG 460 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 DMPL +Q KLLR ++ REI +G +P +D+R+I+ATN+NL + I +G FREDL+YRLN Sbjct: 461 DMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLN 520 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 V+ I LPPLRER+EDI L +F+ ++L GI D + +L ++ WPGN+REL N Sbjct: 521 VLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELEN 580 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 +ME +N+ G+ IDS+ LP L E +L++D EE EKQ+ Sbjct: 581 IMERAINLC-DGDYIDSSYLPSYLK---------PVESKSFNLNIDIDHILPFEEYEKQI 630 Query: 556 IREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 I A+ ++ S + LG+ T+ K KKY + Sbjct: 631 IEAAMKKYKSFNKAGKALGLTHRTVSLKCKKYNI 664 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 64/161 (39%), Gaps = 15/161 (9%) Query: 130 LREFSDYVRH-ISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQT 188 ++ +++ I+ S+ E D +++++ G++V+D + + +NQ Sbjct: 81 VQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLESLPIGIVVIDIDQNIITINQY 140 Query: 189 ALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFL 248 AL+ +G + ++ GK I + H++ + K ++N G Sbjct: 141 ALRFIGCNKKDVKGKKIN-------EVIPSSQLPHVMLSNLKKYGSTLHINNRVGLVNSS 193 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRI 289 F +++ D + ++G M+++ ++I Sbjct: 194 PLFINDKIIGAISVIQD---VSDIIG----MKEINEKFTKI 227 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 163/504 (32%), Positives = 263/504 (52%), Gaps = 31/504 (6%) Query: 115 LIAVTHEQQEHI---SDNLREFSDYVRHISTI--FVSKLLEDQGPGDNISKIFATMIDNM 169 ++ V+H QQ I S + +R + T+ VS L D P + + T++D + Sbjct: 35 VMEVSHGQQMMIKFRSPDQEGSETLIRDLLTVQGVVSVTLVDYMPYERREQELKTILDLV 94 Query: 170 DQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF-----RPL--TFESNFTHGHMQ 222 +G++ V+ ++V +N+ A + + + P+ T ++ + + Sbjct: 95 SEGIIAVNTNHKVTHINEVAAQIFHTTPEEALNQDAELLFEADAPIFETLKTGIPYSLKE 154 Query: 223 HIVSWDDK-------SELIIGQLHNIQGRQLFLMAFHQSHTSFS-VANAPDEPHIEQLVG 274 + + K I+ + I G + + F Q S V P + + ++ Sbjct: 155 RKIRKNQKLIHFLTSGVPILNKRGQIIGGVMTIKDFRQVEELLSKVERKPQSINFDSIIY 214 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 E R MR L +A S++++ GESGTGKE+ A+AIH S R + FI INCAA+P+ Sbjct: 215 ESRRMRDLIETAKTVARGTSTILLRGESGTGKELFAKAIHAESPRSRQAFIPINCAALPD 274 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 LLESELFGY +G+FTGA+ GK GL + A+ GTLFLDEIG++ +Q +LLR ++ I Sbjct: 275 TLLESELFGYEEGSFTGATKGGKKGLFEQAHGGTLFLDEIGEITPQVQVRLLRVLQEGTI 334 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 IG S I VD+RII+AT++NL + I +G+FREDL+YRLNVIP+ +P LRER EDI L+ Sbjct: 335 RRIGGSKEIPVDVRIIAATHRNLEELIDKGQFREDLYYRLNVIPLHIPSLRERPEDIPLI 394 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV----- 509 R+LG + + ++LR +WPGN+R+L NL+E ++N+ + E+ Sbjct: 395 AQVLTRKIARKLGKSEVHLTKESADLLRAQKWPGNVRQLENLLERIINLNSNSEIKPDSF 454 Query: 510 IDSTLLPPNL--LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK 567 + L P L + T + E L D + ++E+Q++ + L+ H S + Sbjct: 455 YEWGDLTPALPVSESENTAHQLIIPFGEPWPPLKD----IVAQVERQVLLKVLAEHPSSR 510 Query: 568 QVADELGIGIATLYRKIKKYELLN 591 + LG+ T+ K+ Y L Sbjct: 511 KAGKILGVSNTTILNKMNSYGLGK 534 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 157/443 (35%), Positives = 242/443 (54%), Gaps = 27/443 (6%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHM 221 F ++D +G++ D E R+ VN A K LG+ + ++G+P R N Sbjct: 195 FKAILDFAYEGIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQVLQSG 254 Query: 222 QHIVSWDDK---------------SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 Q + + +G + Q ++ + Sbjct: 255 QKRLGELHRAGNTLVAENIIPVIAGRETVGAVATFQDVSHLQAVEARARQELYLKGHVAR 314 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 E +V + VM ++ + A + ++V++ GE+GTGKE+VA++IH S RRN PF+A Sbjct: 315 YTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPFVA 374 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAA+PE LLESELFGY +GAFTGA GK GL + A+ GTLFLDEIG++ L LQA+LL Sbjct: 375 VNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLL 434 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ + I+ +G + VD+RII+AT++NL IA FR DL+YRLNV+ I LPPLRE Sbjct: 435 RVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRE 494 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R ED+ LL+ + +RR G + P + +++ ++ + WPGN+REL N++E LV V+ S Sbjct: 495 RPEDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLV-VLRS 553 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 GE +++ L +L + V L A L EME ++IR L+ + Sbjct: 554 GEEVEAGDL-DEILEPAENQPQPV---------LQLALRGTLAEMEGEIIRRTLALTGNN 603 Query: 567 K-QVADELGIGIATLYRKIKKYE 588 K + LG+ TL+R++K ++ Sbjct: 604 KEETCRRLGLSKTTLWRRLKSWQ 626 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 167/515 (32%), Positives = 265/515 (51%), Gaps = 46/515 (8%) Query: 107 DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMI 166 D + + V + ++ I N + + + K E+ I + ++ Sbjct: 67 DVIIETTGVPEVQEKLRQ-IRGNSTALMEAQAANLMMAILKEKEELLEFKRIQGELSAIL 125 Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI--------------RFRPLTF 212 ++M + + V D +++VN + G+ + IG+ I + + Sbjct: 126 NSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNIFEASPDGALATVLKTGKVVFG 185 Query: 213 ESNFTHGHMQHIVS------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN---- 262 + G +VS D K E + + + +S T Sbjct: 186 QRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMNLMEELKKSTTIIENLTDKLG 245 Query: 263 --APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 + + ++G+ +R+ L + A S S+V+++GESGTGKE++A AIH S RR Sbjct: 246 QVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRR 305 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 PFI +NCAAIP+ LLESE FGY KGAFTGA + K G + A+ GT+FLDEIGDM L+ Sbjct: 306 ENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKS-KIGKFELAHGGTIFLDEIGDMNLL 364 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 LQAKLLR ++ E +G + I+VD+R+I+ATN+NL + I +G+FREDL+YRLNV+ IT Sbjct: 365 LQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEIT 424 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLR R+ED+ LV + + R+LG GI+ D E+L + WPGN+REL N++E Sbjct: 425 MPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIER- 483 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 V V E++ ++ + + DV +E+ME+ +IR+A+ Sbjct: 484 VMVTADEEILTKKNFIQHVNQFRMSSERDV-------------DLMPIEQMEEMLIRKAI 530 Query: 561 SRHNS----KKQVADELGIGIATLYRKIKKYELLN 591 S+ + K++ A L I +ATLY K+KK ++ N Sbjct: 531 SKFGNTVEGKRRAAQALNISLATLYNKLKKIKVAN 565 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 177/522 (33%), Positives = 284/522 (54%), Gaps = 69/522 (13%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 TP+ + R VG ++ ++ IS + + + IS Sbjct: 206 TPIFMGGRIVGATAV---------------------LQDISEL--EAISNELEHTRRISM 242 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----------RFRP 209 +I++ G+ V D E R VN+ +T G+ + +++G + Sbjct: 243 ELDAIIESSFDGIYVTDGEGRTLRVNKAYERTTGIRREDVVGHTMAELVEQGFFNESVSM 302 Query: 210 LTFESNFTHGHMQHIVS-----------WDDKSE--LIIGQLHNIQ---------GRQLF 247 E+ +Q + + +DDK E L++ + ++ GR Sbjct: 303 RVLENRKGESLVQKVKTGKTVMVTGTPIFDDKGEISLVVTNVRDVTELYNLQNELGRMEV 362 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 L ++++ +A P + V + M+++ L R+A ++V+V GESG GKE Sbjct: 363 LRTWYENELEQLRESAGAAPSV---VIRSKKMKEVHELAMRLARVDATVLVQGESGVGKE 419 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 + A IH S R++KPF+ I+CAAIPEQLLESELFGY GAFTGA A GK G+ ++A+ G Sbjct: 420 IFADLIHTNSPRKDKPFVKISCAAIPEQLLESELFGYEAGAFTGAKAKGKAGIFESADGG 479 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIG+MPL LQAKLLR ++ ++I+ +GA+ + VDIRI++ATN++L+Q + +G FR Sbjct: 480 TIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSMDVDIRILAATNRDLSQMVHKGAFR 539 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 DL++RLNV+P+ +PPLRER+E I ++FL + R+ G IAPDV++IL + WP Sbjct: 540 NDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYNRKYG-FAKQIAPDVLDILYDYDWP 598 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N +E +V V G+VI+ LP L + AH + +A Sbjct: 599 GNVRELENTVERMVVV-TKGDVIEPADLPEKLRI--------APKSGLAHALGGGSLKSA 649 Query: 548 LEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 LE +E++++++AL H S +VA LG+ +T+ RK+++Y + Sbjct: 650 LEGLEREILQQALETHGSTHKVAKALGVNQSTVVRKLQRYGI 691 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 ++ + + +D++ V+ +D E V F N++ K G I+GKPI Sbjct: 122 SVMRRMSIFLDSIYNPVVAIDAEGLVIFCNKSLAKVSGKSVEEILGKPI 170 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 151/470 (32%), Positives = 245/470 (52%), Gaps = 43/470 (9%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------- 206 + +++ G+ + D + + VN + G+ ++ ++GK + Sbjct: 28 EARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQEMVDKGF 87 Query: 207 ------------FRPLTFESNFTHGHM---------------QHIVSWDDKSELIIGQLH 239 + +T T G + + + I ++ Sbjct: 88 WSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNVRDITEIV 147 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 N++ + ++ + + + +V +++ + +++A S+V++ Sbjct: 148 NLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDSTVLIT 207 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESG GKE+VA IH LS R P I INC AIPE LLESELFGY GAFTGA GK G Sbjct: 208 GESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGARKQGKPG 267 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + + A GTLFLDE+G++ L LQ KLLR ++ E+L +G PI VD+RI++ATN++L + Sbjct: 268 MFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAATNKDLME 327 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + + KFR+DL+YRLNV+ I +PPLRER+EDI LL +FL ++ G APDV++ Sbjct: 328 MVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFN-KRFAPDVID 386 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 L + WPGN+REL N++E ++ + S E+ LP N+ N + + ++ S Sbjct: 387 RLSAYPWPGNIRELENVIERVMVMTKSDEIRTI-HLPGNIKNLSSLQ-------NDIMFS 438 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 A+E +EK +I +AL ++ S ++VA L + +T+ RKIKKY+L Sbjct: 439 EIMPLKKAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKL 488 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 173/593 (29%), Positives = 288/593 (48%), Gaps = 86/593 (14%) Query: 25 ASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLC 84 A +L +E E A TG + S L+ V+ET + + + + + Sbjct: 155 ARLLGIEAE---------AATGKNI----LDVLSTSNLMD-VIETGKVETLKKVKLND-- 198 Query: 85 EGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIF 144 R +P+ + +G +++ ++ IS + Sbjct: 199 ---------RYFISNRSPIKKDGKIIGAVAV---------------------LQDISEL- 227 Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG-- 202 K+ ++ +++ ++++ G+ + D + + N+ G+ + +G Sbjct: 228 -DKMSKELCYVKELNEELDAIVESSFDGLFITDGKGIILRYNKAFELLTGIDAHEYLGLS 286 Query: 203 ----------------------KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 K I + T ++ + + ++ + + Sbjct: 287 VEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGKLTLTTGNPVIDANGEIIRVVCNVRD 346 Query: 241 IQGRQLFLMA------FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 I L Q + + + E LV MR L ++ R+A S Sbjct: 347 ITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNSENLVVTSAKMRNLLDMVVRLASVDS 406 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE++A IH S RR+KPFI +NC AIPE LLESELFGY GAFTGA Sbjct: 407 TVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNCGAIPENLLESELFGYDGGAFTGAKK 466 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK+G I+ A+ GTLFLDEIG+MPL LQ K+LR ++ +EI+ +G ++ I VD+RI++ATN Sbjct: 467 EGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFLQNKEIIRVGGTNYINVDVRIVTATN 526 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + + + +FREDL+YRLNV+P+ +PPLR+R++DI L +F+ + + I+ Sbjct: 527 RNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKDDIPPLAAHFIEVFNHKYKKN-KKIS 585 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 P VV+IL ++ WPGN+REL NL+E +V V ++I S LP L + S + Sbjct: 586 PGVVDILMQYDWPGNIRELENLIERMV-VTTMDDIITSEDLPSYLRDKVGISSSYIIVSG 644 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 L A+E +EKQ++ A +++ + +Q+A EL + +T+ RK KY Sbjct: 645 IVPL------RDAVESVEKQLLERAYAKYRTTRQMAKELKVDASTVVRKAAKY 691 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPL 210 NIS T++++ ++ VD++ ++ N +A + LG+ GK I Sbjct: 118 NSYRNISLELDTIMNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVLSTS 177 Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIE 270 G ++ + I I+ +VA D ++ Sbjct: 178 NLMDVIETGKVETLKKVKLNDRYFISNRSPIK---------KDGKIIGAVAVLQDISELD 228 Query: 271 QLVGECRVMRQLKRL 285 ++ + + +K L Sbjct: 229 KM---SKELCYVKEL 240 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 151/445 (33%), Positives = 248/445 (55%), Gaps = 30/445 (6%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------------FRPL 210 A ++D++++GV+ + + +V ++N+ A + LG+ Q + G + Sbjct: 41 ANILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEK 100 Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQ----LHNIQGRQLFLMAFHQSHTSFS--VANAP 264 T ES + + + ++ + ++ L + G + + T + Sbjct: 101 TIESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKELK 160 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +++G+ MR+L L+ +A S S+V++ GESGTGKE++A AIH+ S R++ PF Sbjct: 161 GRYAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPF 220 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 I +NCAA+ E +LESELFG+V+GAFTGA ++ K G + A+ GTLFLDEIG++ +Q K Sbjct: 221 IKVNCAALSEGVLESELFGHVRGAFTGAVSS-KPGRFELASGGTLFLDEIGEISASMQVK 279 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ E +G + ++VD+R+I+ATN++L I G FR DL+YRL V+P+ LPPL Sbjct: 280 LLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPL 339 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER+EDI LL+ FL + G G++ + IL H +PGN+REL N++E+ V ++ Sbjct: 340 RERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAV-LL 398 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH- 563 +G I LP +L + + + AL ME MIR+A+ + Sbjct: 399 STGRTIGVRELPRDL---------APIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQ 449 Query: 564 NSKKQVADELGIGIATLYRKIKKYE 588 + Q A LGIG +TL+RK+++ Sbjct: 450 GNMSQAAKLLGIGRSTLWRKLREMG 474 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 243/458 (53%), Gaps = 26/458 (5%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI- 205 +L E ++ T++D + G++ VD + R+ N+ A K + + +IGK + Sbjct: 183 RLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVE 242 Query: 206 ------RFRPLTFESNFTHGHMQHIVSWDDKSELI--------IGQLHNIQGRQLFLMAF 251 R + G +Q I + + +G + Q Sbjct: 243 TVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQNME 302 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + + ++ M+ + + A S+V+++GE+GTGKE+ A+ Sbjct: 303 QKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQ 362 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 +IH S R+N PF+AINCAA+PE LLESELFGY +GAFTGA GK GL + A+ GT+FL Sbjct: 363 SIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTIFL 422 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG+MP+ LQ+KLLR I+ ++++ IG I VD+RII ATN+NL + I EGKF+ DLF Sbjct: 423 DEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRDLF 482 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YR++++ I +P LRER+EDIE+LV YF+ ++ GI +E+L+K +PGN+R Sbjct: 483 YRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVR 542 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL +++E + G +ID + +D + S L+E+ Sbjct: 543 ELESIIERACAIC-EGNIIDVRDIKLY---------NDQDSMENKVSSQSFLEIKPLDEI 592 Query: 552 EKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYE 588 EK+ I++ + + + A +LGI TL+RK+K + Sbjct: 593 EKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN 630 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 153/458 (33%), Positives = 238/458 (51%), Gaps = 36/458 (7%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------------ 205 + + +++++ G+ VVD V +VN + L+ + ++G+ + Sbjct: 114 MQERLQMILESVQDGICVVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAV 173 Query: 206 ------RFRPLTFESNFTHGHMQ-HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSF 258 R + + + T + + D + ++ + +I Q + Q Sbjct: 174 LRSGIARIGSIRHKKDGTTIVANVNPIFVDGEIAGVVSVIKDITEIQTLMERLSQVSAKA 233 Query: 259 S------VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + +G+ + + L S+ A S ++V++ GESGTGKEV+A Sbjct: 234 EYLEQELLRTKKTAQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEG 293 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH SGRR PFI +NC AIP LLESELFG+ KGAFTGA K G + AN GT+FLD Sbjct: 294 IHYASGRRRGPFIRVNCGAIPGALLESELFGHEKGAFTGAVRR-KLGKFELANHGTIFLD 352 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIG++ LQ KLLR ++ +E +G I VD+RII+ATN++L + EG FR+DL+Y Sbjct: 353 EIGELDKNLQVKLLRVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYY 412 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIPI LPPLR+R +DI LLV +F+ ++ GI PD +++ +RWPGN+RE Sbjct: 413 RLNVIPIILPPLRDRPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRE 472 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E ++ ++ + ++I + +LP + + + SL D EE E Sbjct: 473 LENVIERVITLMDT-DLITAAMLPSYIKGDIAGREVQ---------SLADDTVLPWEEYE 522 Query: 553 KQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 KQ+I AL + S A L I T+ K +KY L+ Sbjct: 523 KQIIANALRQGTSFNGAAKLLRISHKTVAAKARKYGLV 560 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 160/523 (30%), Positives = 265/523 (50%), Gaps = 49/523 (9%) Query: 94 REKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQG 153 +K + P+++ + + ++S+I N + +++ S+L+ Sbjct: 72 TKKEEIKRPIVVNELNL-ILSIIPFGENT------NTQGSMLIFSNVTNY--SQLIHKLE 122 Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------R 206 + +I T+I+ G++++D + V ++ + LG+ + + IG+ + R Sbjct: 123 EERDSKEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIENTR 182 Query: 207 FRPLTFESNFTHGHMQHI-----------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSH 255 + + I + + + ++G++ ++L + S Sbjct: 183 MPIVLETGKEEVAQLHKIKGSYMIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISV 242 Query: 256 TSFSVANAPDE--------PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 +A +E ++GE + K ++ + A + S+V+++GESGTGKE Sbjct: 243 IEKELATYKSRFREFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKE 302 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 + A AIH S R PF+ +NCAAIP LLESELFGY GAFTGA GK G + AN G Sbjct: 303 IFAHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEG 362 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIGDMPL +Q KLLR I+ RE+ +G + +++IRII+ATN+NL + + EGKFR Sbjct: 363 TIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFR 422 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNV+ I +PPLRER DI L+ ++ + + L GI+ + + L+ + W Sbjct: 423 EDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWK 482 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N++E +N++ + E+I LP + + + Sbjct: 483 GNVRELENILERAINIMENSEIIQVKDLPKEITGKKVSM-------------VPKKLQDI 529 Query: 548 LEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 L E EK I AL +K + A L IG +LY KI+KY++ Sbjct: 530 LAESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEKYKI 572 Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 22/138 (15%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----------- 204 N ++DNM ++VVD +++ F+N+ A + +GK Sbjct: 8 KNYISKLEVILDNMFNAIIVVDSNDKILFINEAASILFDIDSKGGLGKNINEIMPDPDIE 67 Query: 205 ---------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSH 255 I+ + E N + + + + ++I N+ + + Sbjct: 68 YFLSTKKEEIKRPIVVNELNLILSIIPFGENTNTQGSMLI--FSNVTNYSQLIHKLEEER 125 Query: 256 TSFSVANAPDEPHIEQLV 273 S + N E + ++ Sbjct: 126 DSKEILNTVIETAYDGMI 143 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 160/466 (34%), Positives = 243/466 (52%), Gaps = 26/466 (5%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK---- 203 + + ++ + D +G+ +VD+ +Q N T + +GV + IG+ Sbjct: 154 MKQQLEEARHVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAEN 213 Query: 204 -------PIRFRPLTFESNFTHGHMQHIVSWDD----KSELIIGQL-----HNIQGRQLF 247 P+ + E N H + K +IG + I Sbjct: 214 VIENTRLPVVLKTGVPERNQVHRLQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKI 273 Query: 248 LMAFHQSHTSFSV---ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 L F Q + + H E ++GE + + + K++ + A S +SV++ GESG Sbjct: 274 LERFDQKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAARSKASVLITGESGV 333 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE ARAIH N PFI++NCAAIP+ LLESELFGY +GAFTGA NGK G + A Sbjct: 334 GKEQFARAIHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELA 393 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 N GTLFLDEIGDM L+ Q K+LR ++ REI IG + PI VD R+I+ATN++L Q + EG Sbjct: 394 NHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREG 453 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL++RL+VIPI +PPLR R++DI L+V L + + + +V+ ++ + Sbjct: 454 TFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFHY 513 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++E L + I + LP EQ + + ++ + +A Sbjct: 514 NWPGNVRELINVLERLFAL-SDDVHIRAKDLPEEFYYR-DMEQKKLVPMIQSLPAKQEAM 571 Query: 545 GTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 +E E+ +I L +K + A LGI ATLY K+ ++++ Sbjct: 572 KVVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 167/463 (36%), Positives = 246/463 (53%), Gaps = 30/463 (6%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL--- 210 P + + ++D + +G++ +D + +N +A K L + NI G+ IR Sbjct: 75 PQEEKEQKLRGILDTIGEGIIALDKSGIITMINPSAEKILNLS-ENIEGRDIRDILSAEL 133 Query: 211 ----TFESNFTHGHMQHIVSWDD-------KSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 T + + + + V+ I N G + ++ Sbjct: 134 PILKTLSAGEDYDNKEIFVTLPGGKSHYLTSGRPIKNDDGNTVGAVAAIKDINEVRKLVH 193 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 P + ++ E +M + +IA S+V++ GESGTGKE+ ARAIH S R Sbjct: 194 RITHPTMLSFDDIIAESSIMNETISFAKKIAHGDSTVLLTGESGTGKELFARAIHMESPR 253 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 ++ PF+ +NCAAIPE L+ESELFGY +GAFTGA GK GL + AN GT+FLDEIG++ Sbjct: 254 KDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGGKHGLFELANKGTVFLDEIGNLNP 313 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ KLLR ++ RE+ IG I VDIR+I+ATN NL + + EG FREDL+YRLNVIPI Sbjct: 314 QLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHNLEKLVNEGYFREDLYYRLNVIPI 373 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 LPPLR R+EDI L ++ L G Y ++P E+L+ + WPGN+REL N++E Sbjct: 374 KLPPLRNRKEDIIPLANHILGQMRTNHGGQYQ-LSPKSRELLKTYSWPGNVRELENIIER 432 Query: 500 LVNVVPSGEVIDSTLL----------PPNLLNNGTTEQSDVTEVSEAHLSL---DDAGGT 546 VN+ + +I+ L + N Q SEA +S+ D Sbjct: 433 AVNL-ANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQQYQNGQSEAEISVNYKDKDFSQ 491 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 L+ +EKQ++++ LS H S ++ A +LG+ T+ KIKKY L Sbjct: 492 ILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKIKKYGL 534 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 267/505 (52%), Gaps = 34/505 (6%) Query: 100 GTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 G+P+ + + +GVI L +E+ S + + + SK ++ + Sbjct: 88 GSPIFSPEGKPIGVIDLSG--PWYRENKLALATIVSSAIAIENNLKQSKAFKETLTYRQL 145 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-------PIRFRPLT 211 S+ F ++N +LV+D+ R+ VN + K LG + ++IG+ + Sbjct: 146 SEYF---LENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFL 202 Query: 212 FESNFTHGHMQHIVSWDDKSELIIGQLHNIQG------RQLFLMAFHQSHTSFSVANAPD 265 ++ + + +V + I G L + H+ + F +++ P Sbjct: 203 IKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENVAALIALKMHEG-SQFYISSPPA 261 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 E ++G +R+ RL A S + V+++GE+GTGK++ ARAIH+ SGR+ PF+ Sbjct: 262 LKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRK-GPFV 320 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AIN A+P +L+ SELFGYV GAFTGA GK G + A GTLFLDEIGDMP+ +Q L Sbjct: 321 AINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYL 380 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR +E ++++ IG I +D+RII+ATN +L + + E KFREDL++RL V+ I L PLR Sbjct: 381 LRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLR 440 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+ DI LL +F+H +++LG I P + +L + WPGN+REL N+ E+ VN+ Sbjct: 441 ERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELRNVAEWAVNI-A 499 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 I + LP L + T ++ + T+L E+EKQ I + L + Sbjct: 500 EVNTISVSHLPSYLSGSQTIRENS-----------NSFSSTSLIELEKQEISQLLEHYGG 548 Query: 566 K-KQVADELGIGIATLYRKIKKYEL 589 +VA LGI TLYRK+ KY L Sbjct: 549 NITKVAKALGIARNTLYRKLYKYGL 573 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 161/454 (35%), Positives = 243/454 (53%), Gaps = 35/454 (7%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 ++D + G+LV+D + V+ +N + GV +IIGKP+ + T Sbjct: 5 AILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRPEAQLVSTLKDKSV 64 Query: 224 IVSWDDK---------------SELIIGQLHNIQGRQLFLMAFHQSHTSFSV-------- 260 V K + ++G + +G+Q L Sbjct: 65 RVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQWLQQKV 124 Query: 261 -ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 A+ H E ++G + ++++ + + A +P V++ GESGTGKE+ A+AIH+ Sbjct: 125 EASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAIHRGGKN 184 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 ++PF+ INCAAIP LLESELFGY GAFTGA NGK GL + A+ GTLFLDEIG++PL Sbjct: 185 ASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDEIGELPL 244 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ+KLLR ++ I +GA +V RII+ATNQNLA +++G FREDL+YRL V + Sbjct: 245 SLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYRLCVFQL 304 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +PPLRER+EDI LL L + I+ + +E L+ + WPGN+REL N +++ Sbjct: 305 HIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVRELKNALQF 364 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 + ++ V+ + LPP+L + + ++ L LEE E+Q+I Sbjct: 365 ALCMMDE-PVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAG------LEEAERQLITNV 417 Query: 560 LSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 L+ ++ KKQ A L I +ATLY K+KK+ L Sbjct: 418 LANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 150/492 (30%), Positives = 253/492 (51%), Gaps = 41/492 (8%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI-SKIFATMIDNMDQGVLVVDDENRVQF 184 + +D + ++ K LE+ + +++ T+++ GV++VD + + Sbjct: 89 LRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTELLETVMEFAFDGVVMVDKDGYITM 148 Query: 185 VNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHI---------VSWD 228 +++ + L V ++IGK R + +Q I V Sbjct: 149 LSKEYAEFLNVRVEDVIGKHATDVIENTRMHIVAKTGKPEVADLQRIKGDYMIATRVPII 208 Query: 229 DKSELI----------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 E+ +G +++ R + + + +VG+ Sbjct: 209 KNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKGEFREQNKATYTFHHIVGDSDS 268 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 + + K R A S S+V+++GESGTGKE+ A AIH R F+ +NCAAIP LLE Sbjct: 269 IIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNAGSRAPGSFVKVNCAAIPPDLLE 328 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY +G+FTGA GK G +AA+ GT+FLDEIG++PL +Q K LR ++ +E+ +G Sbjct: 329 SELFGYEEGSFTGAKKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVERVG 388 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 +++ +D+R+I+ATN+NL + + +G+FR DLFYRLNV+ I +PPLR+R++D+ L +F Sbjct: 389 STTSKPIDVRVIAATNRNLEEMVDKGEFRLDLFYRLNVVAIHIPPLRDREKDLGQLCLHF 448 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + GI+ D +L +++WPGN+REL N++E +N++ +G VI S LP Sbjct: 449 IEKLNPIMKKKVDGISKDAQRLLHQYKWPGNIRELENVIERALNMLDNGTVIKSEHLPAK 508 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGI 577 L + + + VS +E+ EK + AL + ++ + A LGI Sbjct: 509 LTDTPSNHSVESLAVS-------------IEKAEKTALMNALKQTKGNRSKAASLLGISR 555 Query: 578 ATLYRKIKKYEL 589 +T Y K+ KY+L Sbjct: 556 STFYEKLTKYQL 567 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 147/458 (32%), Positives = 237/458 (51%), Gaps = 33/458 (7%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 V + + + T+++ +GV V+D+ + VN +G ++NIIG+ Sbjct: 233 VEGVAHELETVKELKMTLETVLEVAYEGVAVLDEAGMITLVNARFCNKIGKPKDNIIGEN 292 Query: 205 IRFRPLTFESNFTHGHMQ-----------HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQ 253 I + ++ I + ++ ++ + ++ Sbjct: 293 INRFIPLSHNQMPLSVLEINAKPCVVSTLPITKEGNTKGFVVKIYEDLDNLADIVQQINR 352 Query: 254 SHTSFSVANA------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 + + + +V + LK + ++ S S+V++ GESGTGKE Sbjct: 353 INMQLNYYKNELYKVNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKE 412 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 + A +IH S RR +PFI +NC+AIP +L E+ELFGY GAFTGA GK G + A+ G Sbjct: 413 LFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCG 472 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIGDMPL LQ+KLLR I+ +EI +G +VD+RII+ATN++L + + EG FR Sbjct: 473 TIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFR 532 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL++R+NV+ + +PPLR+R++DI LL F+ + +LG GI +E L ++ WP Sbjct: 533 EDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALEALTRYDWP 592 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N++E ++N SG +I+ LP ++ + T+ Sbjct: 593 GNIRELENIIERMLNYRESG-LIELQDLPEEIVGRPGGMAAKATQ--------------T 637 Query: 548 LEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKI 584 L ME + I+ AL+ +K + A LGI + LY K+ Sbjct: 638 LAVMEMETIQAALAEAGGNKSKAARLLGISRSKLYEKL 675 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 141/338 (41%), Positives = 204/338 (60%), Gaps = 7/338 (2%) Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + + + E VG+ ++++ LI ++A + S+V++ GESGTGKE++ARA Sbjct: 129 ERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARA 188 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH S RR+ P + INC AIPE+LLESELFG+ KGAFTGA + G + AN GT+FLD Sbjct: 189 IHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKT-RIGRFEVANGGTIFLD 247 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGDM LQ KLLR I+ + IG++ + VDIRI++ATN++L + + + +FREDL+Y Sbjct: 248 EIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYY 307 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIPI +PPLR+R+ DI LL+ +F++ I+ + L H WPGN+RE Sbjct: 308 RLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRE 367 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E V ++ SG+ ID LP +L + E ++ + D A+EE E Sbjct: 368 LENVVER-VLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDH----AVEEYE 422 Query: 553 KQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 K +I +AL N K Q A L I TL K+K+ + Sbjct: 423 KNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 147/518 (28%), Positives = 260/518 (50%), Gaps = 66/518 (12%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 +P+ + +G + + + IS + + ++ I+ Sbjct: 88 SPIFKEGELIGALGI---------------------FQDISEL--EHISQELAKTKAIND 124 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP---------------- 204 +I++ G + D E +N + + G ++G+ Sbjct: 125 ELRAIIESSYDGFWITDGEGYTIMINSSYERISGAKAEEVVGRHMKELEEEGFCSESVTL 184 Query: 205 --------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQS-- 254 + F + D ++ + +I ++ Sbjct: 185 KVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLELKDELEKTQA 244 Query: 255 ---HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 H + ++ ++V + +V ++L +R+A S+V++ GE+G GKE+VA+ Sbjct: 245 LTRHYKEKLTEMEEKLGEGEIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEIVAK 304 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH+ S R +PFI INC AIPE LLESELFG+ G+FTGAS NGK G + AN GTL L Sbjct: 305 YIHQNSNRSEQPFIKINCGAIPENLLESELFGHEPGSFTGASKNGKPGKFEIANGGTLLL 364 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG++ LQ KLLRA++ +EI IG P Q+D++II+ TN++L + +++G+FREDL+ Sbjct: 365 DEIGELSKDLQVKLLRALQDQEITRIGGVKPRQLDVKIIACTNRDLEEMVSQGEFREDLY 424 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL+V+P+ +PPLRER +DI L+ +++ + + G G++ +E L + WPGN+R Sbjct: 425 YRLSVVPLYIPPLRERPDDIPFLIRHYIRKYNEKYGVN-KGLSSSALEELVSYNWPGNVR 483 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N++E LV +VP +I+++ LP + + +++ A+ ++ Sbjct: 484 ELENMIERLVIMVPEN-LIETSDLPQQIKESNVKILENLS------------LPDAVSKL 530 Query: 552 EKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 EK+M+++A+ + N+ ++ A LG+ +T+ RK+ KY L Sbjct: 531 EKRMLQKAMEQSNNTREAAQILGVAQSTVVRKLDKYGL 568 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 + ++D++ G++ ++ E + N++A + LG+ + ++G IR Sbjct: 5 QNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIR 53 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 152/502 (30%), Positives = 250/502 (49%), Gaps = 39/502 (7%) Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 ++A E + H D + +S + + +++ +D+ V Sbjct: 87 ILAFLPELRYHALVCRNNQGDILGVLS--YDQVFHDLALRVCETEARINAVVETVDEAVC 144 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDK---- 230 +VD+ + V N A + G+ +IIGKPI + Q I S + Sbjct: 145 IVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVNKEWQEIRSLHHQPVPG 204 Query: 231 ------------SELIIGQL---HNIQGRQLFLMAFHQSHTSFSVANA------PDEPHI 269 +IG + ++ +Q+ + D Sbjct: 205 THVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQRLEKEIDKFSTDRNPF 264 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + G + + +L + + A + + V++ GESGTGKE+ A+AIH+ S R +K F INC Sbjct: 265 AAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASPRIDKKFCVINC 324 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP L ESE+FGY GAFTGA GK G+ + A+ GTLFLDEI ++PL +Q KLLR + Sbjct: 325 AAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVL 384 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + IG S+PI+VD+RII+ATN++L +A G FREDL+YRLNV+ + +PPLRER+E Sbjct: 385 QDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERRE 444 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LV+ FL ++ + P V+ + WPGN+R+L N++E +V ++ G+ Sbjct: 445 DIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQLKNIIERMV-ILTEGDT 503 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQ 568 + + +P +L + +Q+ T + E+ E+++I L + + ++ + Sbjct: 504 VLESAIPESLKLSSRQDQATAT----------IGLASVTEQTERELIIRTLKQVNGNRSE 553 Query: 569 VADELGIGIATLYRKIKKYELL 590 A LGI +TLY K+ + ++ Sbjct: 554 AARMLGIPRSTLYYKMHQLGIM 575 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 167/565 (29%), Positives = 280/565 (49%), Gaps = 43/565 (7%) Query: 35 VDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCD-----S 89 +D +L TG +++ ++ + +L K + + +C+ C Sbjct: 1 MDLDLLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKEGQSCKNLKMFDICKKCPIDYYNK 60 Query: 90 KENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLR--EFSDYVRHISTIFVSK 147 E I+L + + EF+ + I +K Sbjct: 61 HSTFPEFEDFN------------ITLSCCSKKVCYSFKPVFENGEFAGIIEEIRD--STK 106 Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF 207 + + + ++D++ ++VVD++ ++ NQ A L + +I G + Sbjct: 107 VNQYIEIIKKEKEFSHLILDSVIDAIVVVDNQGKIINYNQNAKNLL-CREVDIKGMNLSL 165 Query: 208 RPLTFESNFTHGHMQHIVSWDDKSELIIGQLH-NIQGRQLFLMAFHQSHTSFSVANAPDE 266 I+ ++ + + ++ + + +F+ A Sbjct: 166 LIKKDLKELPSSREDIIIETPAYGKIKVSAVFTRLKSGEGSIFSFYVVPDCMLSQEAASN 225 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 +L+ + +M + + +A + ++V++ GESGTGK V+A+ IH S RR+KPF+ Sbjct: 226 KS--RLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVK 283 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIP+ LLESELFGYVKGAFTGA + K G ++ A+ GTLFLDEIG++P LQ+KLL Sbjct: 284 INCAAIPDNLLESELFGYVKGAFTGAVKD-KPGKVELADGGTLFLDEIGELPTYLQSKLL 342 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 I+ +E +G + +VD+RII+ATN++L+Q + EGKFREDL+YRL VI I +P LRE Sbjct: 343 HLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRE 402 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+EDI L++YF+ L++++ GI+P+ V +L + +PGN+REL N++E V ++ Sbjct: 403 RKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAV-ILAK 461 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-S 565 G+ I+ + LP ++ N + + EKQ I L N + Sbjct: 462 GKFIEVSDLPDEIVYNTKILTQNDLDEEID---------------EKQKILRVLESVNWN 506 Query: 566 KKQVADELGIGIATLYRKIKKYELL 590 K + A L I TL+RK+KKY L+ Sbjct: 507 KSKAAKILNIDRVTLWRKLKKYGLV 531 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 157/517 (30%), Positives = 260/517 (50%), Gaps = 61/517 (11%) Query: 101 TPV-ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 +P+ VG I + E + + ++ Sbjct: 87 SPIRNADGELVGAIGVFQDNSE-----------------------LESMTHAFKEEKKVA 123 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------------- 206 + +I++ G+ + D + VN + G+ + ++GK ++ Sbjct: 124 EELQDIIESSYDGMWITDGQGYTLHVNSAYERISGMKKEEVLGKHMQELVDKGYFSDSVT 183 Query: 207 ------------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG-----RQLFLM 249 + I + + ++ + +I + L Sbjct: 184 LHVLEKKERVTMMHEIRKTGKRALITGNPIFDENGEIVRVVTNVRDITELLNLKQDLEDK 243 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 A + +A + + +V E MR + L + + S+V+++GESG GKEVV Sbjct: 244 AKQAARYQNELAQLRSKSIYDDIVVESPQMRHIFDLATWVGQVDSTVLILGESGVGKEVV 303 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 + + + S RR++PFI +NC AIPE LLESELFGY KG+FTGA GK G+ + A+ GT+ Sbjct: 304 TQIVVRSSERRDEPFIKVNCGAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTI 363 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 LDE+ ++PL LQ KLLRAI+ +EI+ +G + P+++D+RII+ATN++L + + G+FRED Sbjct: 364 LLDEVAEIPLNLQVKLLRAIQEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFRED 423 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 LFYRLNVIPIT+PPLRER+EDI L+ FL + + + +AP+ VE L + WPGN Sbjct: 424 LFYRLNVIPITVPPLRERREDIPALIELFLCKYNEKY-RLNKTLAPETVERLVSYDWPGN 482 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E +V + EV LP L + G T+ +VS AL Sbjct: 483 VRELQNIVERMVVLSRDDEV-GPDALPLQLKSVGKTDADFHVDVSGVV-----PLKDALF 536 Query: 550 EMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 E+EK+++ +AL ++ + ++ A+ LG+ +T+ RK ++ Sbjct: 537 EVEKKLVVKALQKYGTTRRAAEALGVDQSTVVRKYQR 573 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 46/126 (36%), Gaps = 11/126 (8%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNFTHG 219 T++D++ G++ D + R+ +N++A + G ++ ++G + F G Sbjct: 8 LQTVLDSVYNGIVACDTDGRIILINESAARVAGQPKDKLMGARVDQVFPNTGLLEIIRTG 67 Query: 220 HMQHIVSWDDKSELIIGQ---LHNIQGRQLFLMAFHQSHTSFS------VANAPDEPHIE 270 + + + L++ + N G + + Q ++ ++ Sbjct: 68 ENRPHQRLNFQGRLLLSNRSPIRNADGELVGAIGVFQDNSELESMTHAFKEEKKVAEELQ 127 Query: 271 QLVGEC 276 ++ Sbjct: 128 DIIESS 133 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/507 (30%), Positives = 257/507 (50%), Gaps = 37/507 (7%) Query: 100 GTPVILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 P+ +G ++L + H + ++ + ++ E Sbjct: 139 AAPIRNSIGEAIGTLNLTGYSEYVHSHTLGMVAAAANAIAYMLE-----SKEVNNKLFLA 193 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG--------------KP 204 K T++D++D G+ V + ++ +NQ A L + I+G + Sbjct: 194 KKSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGMEGIKLIEGWAGVQES 253 Query: 205 IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSF-SVANA 263 + E + + + I+ + N+QG + + + Sbjct: 254 VESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCMIREIKKMRRLVNKMIGK 313 Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 ++++G ++ +I+ SPS+V+++GESGTGKEV A++IH S RR++P Sbjct: 314 QALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSIHNHSERRDEP 373 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+AINC A+P L+ESELFGY GAFTGA G G + A+ GTLFLDEIG+MPL +QA Sbjct: 374 FVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGEMPLDMQA 433 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 LLR +E ++ +G + I VD+RII+ATN++L + FR DL+YRLNV+P+ LPP Sbjct: 434 NLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLILPP 493 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER+ DI LL+ YF+ + +L + D+++ + + W GN+REL N++E N+ Sbjct: 494 LRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGNIRELENVIE---NL 550 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + SGE+ N + +E+ + LE+MEK+ I + L+++ Sbjct: 551 MNSGEL------------NFLERVELSSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKY 598 Query: 564 -NSKKQVADELGIGIATLYRKIKKYEL 589 + Q A+ LGIG TLYRK+ KY++ Sbjct: 599 EGNVSQAAEALGIGRNTLYRKMAKYKI 625 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 167/611 (27%), Positives = 281/611 (45%), Gaps = 67/611 (10%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVA--GTGAYGKFLGRQLSGNSRLLRHVL 67 L + ++ S + V + ++ RV K + +L+ V Sbjct: 117 LESYRNISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKAENVK--GKLIDDVY 174 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 T + +S + N +P+I +G + ++ E +E Sbjct: 175 PTSRLTNIIKSGQVETLQ--KIMLNNHYFISNRSPIIKDGEIIGAVGVLQDISELEE--- 229 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 L + +++ +I++ G+ + D +N+ Sbjct: 230 --------------------LSRELKYVKELNEELDAIIESSYDGLYITDGNGMTLRLNK 269 Query: 188 TALKTLGVVQNNIIGKPI------------------------RFRPLTFESNFTHGHMQH 223 G+ +G+ + T T Sbjct: 270 AFEMITGINGREFLGRHVDDIAREGIVSESVSSLALARKETVTIIQETRSGKTTLATGSP 329 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQ-----SHTSFSVANAPDEPHIEQLVGECRV 278 + ++ + +I + Q H + ++++ + Sbjct: 330 VFDKIGNIFRVVCNVRDITELNMLKQKLEQVQGLSQHYESQLKTLRIYSGTDKIISKSTE 389 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 MR+L + R+A S++++ GESGTGKE++A IH S R KPFI +NC AIPE L+E Sbjct: 390 MRKLLETVVRLAEVDSTILINGESGTGKELIAETIHNHSARAKKPFIKVNCGAIPENLME 449 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY GAFTGA GK G + A+ GTLFLDEIGD+P LQ KLLR ++++EI +G Sbjct: 450 SELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQVKLLRVLQSKEINRVG 509 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++VD RI++ATN+NL + + + +FREDL+YRL+VIP+ +PPLR+R+EDI L+ +F Sbjct: 510 GRQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPPLRDRKEDIPSLIVHF 569 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + L R+ + I+PDVV+IL + WPGN+REL NL+E LV V+ S ++I LP + Sbjct: 570 IALFNRKY-KLNKRISPDVVDILMAYDWPGNVRELENLIERLV-VISSSDIISRDELPVH 627 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIA 578 L S + + +S A+E +E+Q++ A +++ + +Q+A +L + + Sbjct: 628 L-------SSAAVDNPQVSVSAIIPLKEAVESVERQLLERAFAQYRTTRQMAQKLEVNAS 680 Query: 579 TLYRKIKKYEL 589 T+ RK KY + Sbjct: 681 TVVRKAAKYGI 691 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 240/471 (50%), Gaps = 45/471 (9%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 + + +ID+ G+ + D + V +N + G+ ++G+ + Sbjct: 17 YANFNELITELEAIIDSSYDGIFITDGKANVLRLNAAYERITGIKAAEVVGRNMVDLVRE 76 Query: 206 ----RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ-LHNIQGRQLFLMAFHQSHTSFSV 260 + L + IV ++K L+ G + + +G ++ + T + Sbjct: 77 GLYDQSVTLLVLEQRARVTIDQIVKRNNKHILVTGNPVFDKRGGIFRVVTNVRDVTDLNR 136 Query: 261 ANAPDEPHIE--------------------QLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 E ++ R + + L +++A S+V++ G Sbjct: 137 LQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITG 196 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE+ A+ IH+ N+PFI INC AIPE LLESELFGY GAFTGA GK GL Sbjct: 197 ESGTGKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFGYDGGAFTGAKREGKPGL 256 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A+ GTLFLDEIG+MP +LQ KLLR I+ + ++ +G V++RII+ATN++LA Sbjct: 257 FELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHM 316 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + +G FREDL+YRL V+P+ +PPLRER+EDI LLV +FL ++ G I PDV++ Sbjct: 317 VQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFGFN-KVILPDVIDR 375 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L ++ WPGN+R+L N++E LV P G I + +LP + ++ Sbjct: 376 LTEYSWPGNVRQLENIIERLVVTTP-GNEITADMLPQQVNARIPLPKTGTK--------- 425 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 A+ EK ++ E ++ + +VAD LGI T RK KY L++ Sbjct: 426 ---LKEAVAATEKYLLTETFRQYGNWNKVADVLGIDRTTACRKAVKYGLIS 473 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 150/384 (39%), Positives = 213/384 (55%), Gaps = 6/384 (1%) Query: 209 PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH 268 P+ + ++ E I+ ++ + A + +V P Sbjct: 76 PVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPLVTVGKGEIAPR 135 Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 L+G M+++ + I RIA S +V++ GESGTGKE+VA AIH S R+ KPF+ I+ Sbjct: 136 PGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKID 195 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 C AIPE LLESELFG+ KGAFTGA K G + A+ GT+FLDEIGD+ LQAKLLR Sbjct: 196 CTAIPENLLESELFGHEKGAFTGAHTR-KLGKFELADGGTVFLDEIGDISPALQAKLLRF 254 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ + +G + +VD+RII+ATN++L + + G FREDL+YRLNV+ I LPPLRER+ Sbjct: 255 LQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERK 314 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 EDI LLV YF+ L R+ G G+ V +IL ++ WPGN+REL N+ E V ++ G Sbjct: 315 EDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAV-LMARGN 373 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKK 567 VI LP LL + + + EME+ I AL + +K Sbjct: 374 VITPESLPEYLLRAVRGRTEAWHPAEDRGV---LPLKEMVAEMERSAILRALEEYRGNKT 430 Query: 568 QVADELGIGIATLYRKIKKYELLN 591 VA LG+ TLY K+K+ + + Sbjct: 431 AVARALGMSRTTLYAKMKELGIAD 454 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 151/495 (30%), Positives = 247/495 (49%), Gaps = 42/495 (8%) Query: 137 VRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV 196 + +L E D + F + D + + ++ N+ A++ LG+ Sbjct: 490 LEQQKEEVTHELEETSKALDASEERFRDLFDEAPIAYVHEELDSHFIRANRAAIRILGIK 549 Query: 197 QNNI-------------------------IGKPIRFRPLTFESNFTHGHMQHIVSW---- 227 ++ IG+ + E + W Sbjct: 550 PEDVPHTYGKTFAPDTPDAQRRMREAFESIGRGTDTSGVVLEMRRKDNGKPFWIQWWSRP 609 Query: 228 DDKSELIIGQLHNIQGRQLFL--MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 D + +I R L A ++ ++ + + ++VG + Q+ R Sbjct: 610 DPSGKYTRTMFLDITDRVLMEQDKARLEAQNTYLQEEIRSQHNFVEIVGNSPSLLQVLRQ 669 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 + R+A + S+V++ GE+GTGKE++ARAIH S RR +P + +NC AI L+ESELFG+V Sbjct: 670 VDRVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHV 729 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA AN + G + A+ GT+FLDE+G++P Q KLLR ++ +E PIG++ ++V Sbjct: 730 KGAFTGAIAN-REGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKV 788 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+R+I+ATN++L + EGKFR DLFYRLNV+P+T+PPLR+R DI LL +FL R+ Sbjct: 789 DVRVIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARK 848 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV-IDSTLLPPNL----- 519 LG IA + + L ++ WPGN+REL N++E V + + ++ LP Sbjct: 849 LGKSLGQIAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQ 908 Query: 520 LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGI 575 T E++ + L G ALE++E+Q I L + N + + A L + Sbjct: 909 GPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNL 968 Query: 576 GIATLYRKIKKYELL 590 +TL +++K ++ Sbjct: 969 QPSTLRSRMQKLGIV 983 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 242/465 (52%), Gaps = 40/465 (8%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL--- 210 ++ +++ M +G+LVV ++ +Q VN G + ++G+P Sbjct: 3 KNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCDAC 62 Query: 211 -------------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ------------ 245 FE H++ D ++ + Q Sbjct: 63 KLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIVTD 122 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 + M +E + +VG R M+ L L+ + A S V + GESGTG Sbjct: 123 ISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTG 182 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE+VA+AIH LS R +P+I +NCAA+ E LLESELFG+VKGAFTGA + G +AA+ Sbjct: 183 KELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGAL-QHRKGRFEAAH 241 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 G +FLDEIGD+P+ +Q KLLR +E + +G + I VD+R I+ATN+NL IA G Sbjct: 242 KGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGG 301 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FREDLFYR+NVIPI LPPLRER+ED+ LV +F+ +R+ G++P+ + I ++ Sbjct: 302 FREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYS 361 Query: 486 WPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG 545 WPGN+REL + +EY V+ G+ I S LP L + G Q+ + L A Sbjct: 362 WPGNVRELKSALEYS-YVLAEGDRIRSENLPEYLKDGGNDFQA---------VDLPPAPA 411 Query: 546 TALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 L++ +KQ + EAL + +K Q A LGI T+ +++KY + Sbjct: 412 ENLQQRQKQELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGI 456 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 154/500 (30%), Positives = 267/500 (53%), Gaps = 26/500 (5%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 P+ LQ + VG++ ++ T ++ ++ + + ++S K + + + Sbjct: 69 PIRLQLKVVGLLWVM-FTSGKKIPFNEIEQVVAMIETYLS--MEEKQRQYTVENRKLRQE 125 Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR-------PLTFES 214 ++ D+ +L++D + V + LG+ ++ ++G+ I +T Sbjct: 126 LKGFLEFEDKPLLLLDRQGIVTECSAGVQTVLGLNRSRLLGETIERLTSEKVKIDVTNVF 185 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE-PHIEQLV 273 + ++ + + + + +QG + M + + D + ++ Sbjct: 186 KPSFQTVEMKLEGKREKWHVQIKPTYVQGEVVSFMIKFLKKETNQFKQSKDLLYSFQDII 245 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G + + + RIA ++++ GESGTGKE+ A+A+H+ S R PF+AINCAAIP Sbjct: 246 GSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIP 305 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 + LLESELFGY GAFTGA GK G + A+ GT+FLDEIGDM L LQAKLLR ++ R+ Sbjct: 306 DNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERK 365 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + +G + + VD+RII+AT++NL + + + FREDL+YRLNVIPIT+PP+RER+ED+ + Sbjct: 366 VERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPI 425 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L+ YF+ + + + D +++ ++ WPGN+RE+ N++E+ V + +G++I + Sbjct: 426 LIEYFMKRLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEH-VIYLETGDLITAD 484 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQV 569 LP L S + H EE KQ + L + KK++ Sbjct: 485 SLPAYLKIKEGKSTSQLQINVAPHG----------EESFKQQVLHLLDVYGRHTEGKKRI 534 Query: 570 ADELGIGIATLYRKIKKYEL 589 A E+GI + TLYR++KK ++ Sbjct: 535 AKEMGISLPTLYRRLKKLKI 554 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 151/455 (33%), Positives = 242/455 (53%), Gaps = 26/455 (5%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 + E + +++F ++++ G++ +DD R+ N A K G+ +G IR Sbjct: 181 NIAEVRISERERAELFRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIR 240 Query: 207 -------FRPLTFESNFTHGHMQHIVS--------WDDKSELIIGQLHNIQGRQLFLMAF 251 + + G +Q++ + ++G + N + Sbjct: 241 DKIPNTNLPRILRQGGSEDGELQYVGEKVIVTQRFAIKVNGRVVGAVANFRDVTELQRLE 300 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + ++GE ++ L + A ++V++VGE+GTGKE++A+ Sbjct: 301 RLVRQKLHAKGLVARIRLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKEMLAQ 360 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH S R N PF+A+NCAA+PE LLESELFGY +GAFTGA GK GL + A+ GT+FL Sbjct: 361 GIHNASHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGGTIFL 420 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEI +MPL LQ++LLR ++ RE+L IG I VD+RII+A+N+NL + +G FR+DL+ Sbjct: 421 DEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDLY 480 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL+++ +T PPLRER+EDI LLV FL H+ L + I V++L ++ WPGN+R Sbjct: 481 YRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSH-LNPLVSDIDSLAVQLLAEYEWPGNVR 539 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N ++ L+ ++ ++I + L + +A S L ++ Sbjct: 540 ELENAIQRLI-ILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAAPS--------LADL 590 Query: 552 EKQMIREAL-SRHNSKKQVADELGIGIATLYRKIK 585 E Q I L +N+K + A LGI +TL+RK++ Sbjct: 591 EAQYIAAVLAEENNNKSRAAKRLGIDRSTLWRKLR 625 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 257/492 (52%), Gaps = 33/492 (6%) Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 DN+ + ++ + + + + ++++ G++V+D + + Sbjct: 225 MTMDNINGAIIIFQDLTDLEC--IASELESVTKLYNTLQSVMEIAYDGIIVIDKKGVITM 282 Query: 185 VNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHI-----------VS 226 NQ+ L + N++GKP+ R R + +Q I + Sbjct: 283 ANQSIADFLHKSRENMVGKPVEDIIENSRLRKVIKTGVAELHQLQFINGNPHVVSRMPIV 342 Query: 227 WDDKSELIIGQ--------LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 D K+ +G + N+ + + L + + + ++ +Q++ Sbjct: 343 RDGKALGAVGMILFSNFKDVRNLAQKFIRLDQKVAYYKNQIRNDMSNKITFDQIITSHEA 402 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 +++K A S SS+++ GESGTGKE++A++IH+ R+K + +NCAAIP LLE Sbjct: 403 FKKIKERAEIAAQSSSSILITGESGTGKELMAQSIHEAGVSRDKRLVKVNCAAIPADLLE 462 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SE FGY GAFTGA GK G + A+ GTLFLDEIGDM LQ+KLLR ++ + PIG Sbjct: 463 SEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIG 522 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++ V R+I+ATNQ+L Q + E +FR DL+YRLNVI +PPLRER +DI LLVH+F Sbjct: 523 SNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRERPQDIILLVHFF 582 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + LGS I+ D + +L +H WPGN+REL N++E + N V G ++D LPPN Sbjct: 583 IEKYNHILGSAIQDISDDAMTVLLEHTWPGNVRELENVVERVANFV-KGNLVDIDDLPPN 641 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGI 577 L E+ + ++ + LS + ++ +K I+ AL +K + A LGI Sbjct: 642 LKEK---EKKSPSFMAGSPLSTKQRLHKSRDDHDKLAIQSALREADGNKAKAAKILGISR 698 Query: 578 ATLYRKIKKYEL 589 + LY K+ +++L Sbjct: 699 SWLYTKMARFDL 710 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 106 QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM 165 +D G ++ I + I N + + ++ ++ + + + Sbjct: 91 EDMPYGEVTEIVKNSKVGTAIVLNDKNEVKGIFTKASWIMAMFENETLLNHQM----QII 146 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIV 225 +++M GV+ +D ++ +NQ A + G+ GKP+ E + ++ +V Sbjct: 147 LNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPVSLFLKGLELDEV--LLKGVV 204 Query: 226 SWDDKS 231 S KS Sbjct: 205 SIGIKS 210 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 156/447 (34%), Positives = 230/447 (51%), Gaps = 35/447 (7%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNF 216 + +F T++D G++ V+ + R+ N A + + IGK I + L E Sbjct: 193 ASLFRTVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVL 252 Query: 217 THGHMQ--HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH------ 268 T G + ++ L + G+ + +A Q + A Sbjct: 253 TTGRDELGQLLKVSGTRVLCNKVPIVVNGKPVGAVATFQDAGNIQQMEARIRREIYARGH 312 Query: 269 -----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 E +VG+ +R + A + SSV+++GE+GTGKEV A++IH S R N P Sbjct: 313 VATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANGP 372 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+AINCAA+P Q+LESELFGYV GAFTGAS GK GL + A+ GT+FLDEI +M + Q Sbjct: 373 FVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQG 432 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR ++ ++++ +G+ I VD+R+I+ATNQNL++ + E KFR DL+YRLNV+ + LPP Sbjct: 433 KLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLPP 492 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER DI +FL H+ P +E L +H WPGN+REL N +E +V V Sbjct: 493 LRERGADIIRYAEFFLEKHSAAQNRRL-AFTPAALERLARHPWPGNVRELQNTIERIVAV 551 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + D A + EK+ IR+AL+ Sbjct: 552 CRQ------------------PQVDAGLVAQMLEDDADSGIEVAAADSEKEQIRQALAIA 593 Query: 564 NSKK-QVADELGIGIATLYRKIKKYEL 589 K+ + A LG+ +TL+RK+KK L Sbjct: 594 KGKQGEAARLLGVSRSTLWRKMKKLGL 620 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 158/507 (31%), Positives = 257/507 (50%), Gaps = 27/507 (5%) Query: 100 GTPVILQD-RCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 P+ ++ +GV+++ + +H + F + + + Sbjct: 192 AAPIFDENGELLGVVNVAGHYLKVHQHTLGMTVALGKAIE-----FSLRQSRLRREKELA 246 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP---IRFRPLTFESN 215 K +++D++ +G++ +D + R+ +N+TA + LG+ +++ +P + + T Sbjct: 247 GKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKPQDVLNQPADAVLGQHSTVVEA 306 Query: 216 FTHGH----MQHIVSWDDKSELIIGQLHNIQGRQ------LFLMAFHQSHTSFSVANAPD 265 F G + + + +K IG + + + +F H ++A Sbjct: 307 FRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVLAVFKGLSHARGFVKNMAGFKA 366 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + E L G Q+ L + A PS+V+++GESGTGKE+ A+AIH S N PF+ Sbjct: 367 YFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGTGKEMFAQAIHNASSSSNGPFV 426 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 INCAAIP +L+ESELFGY GAFTGA G+ G Q A GTLFLDE+ M + +QAKL Sbjct: 427 GINCAAIPAELIESELFGYEGGAFTGAKREGQPGKFQLAAHGTLFLDEVNAMSMTMQAKL 486 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ R IG I ++ RII+A+N++L + + +G FREDL YRLNV+ I +PPLR Sbjct: 487 LRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVRQGNFREDLLYRLNVVTIEIPPLR 546 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV- 504 ER++D+ L+ +F H+++L I+ +++ + WPGN+REL N++E + Sbjct: 547 ERKDDLVHLIEHFCREHSKKL-KFEFTISEPARKLMMAYHWPGNVRELENVIERCAVMAL 605 Query: 505 -PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 S I+ L + E V DD LE +EK+ + EAL + Sbjct: 606 SRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFDD----NLESLEKRAVEEALKQT 661 Query: 564 NSK-KQVADELGIGIATLYRKIKKYEL 589 + A LG+ TLYRKIKKY + Sbjct: 662 GGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 235/469 (50%), Gaps = 34/469 (7%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 ++L E +I + +I++ + + VVD+ VN K G+ + IIG+P Sbjct: 198 ATQLAEQVTDLRSIQTMLEAIINSSNDAISVVDENGTGLMVNPAYTKLTGLDSDQIIGQP 257 Query: 205 IRFRPLTFES----------------------NFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 ES V D + + IG +H++ Sbjct: 258 ATADISEGESIHMQVLRTKKPVRGARLKLGPHKKDVIVNVAPVVVDGELKGSIGVIHDVS 317 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 +L ++ H +A ++VG + M R A + ++++GE+ Sbjct: 318 --ELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAFAIEQAKRGAKTSFPILLLGET 375 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE+ A AIH S R+ +PF+ +NCAA+ E LLESELFGY +GAF+GA +GK GL + Sbjct: 376 GTGKELFAHAIHNESERKGQPFVRVNCAALTETLLESELFGYEQGAFSGALKSGKKGLFE 435 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A G++FLDEIG+M QAKLLR ++ +EI+ +G + PI + +R+I+ATN +L I Sbjct: 436 EAEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTKPIPIHVRVIAATNVDLEGAIR 495 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 E +FREDL+YRLN +PI +PPLRER D+ L+ + L G I+ V+ Sbjct: 496 ERRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLRKLNLDYGHNIQSISKLVLSRFE 555 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEV-IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 + WPGN+REL N++ + + G + LP +G E+SD T + Sbjct: 556 GYYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFGQSGKREESDATAPKQLQA--- 612 Query: 542 DAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 L E EK+ +R L+ + K + A LGI I +LY K++KY L Sbjct: 613 -----FLAEKEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEKYNL 656 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 5/156 (3%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP 209 E + I + G++VV+ +VQF+N+ A GV IGKPI+ Sbjct: 85 EKVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPIQ--T 142 Query: 210 LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHI 269 L S ++ E G + + R + S + + + Sbjct: 143 LLPSSGLPRVIETQQPEYNQLHEFDNGTVI-VTTRVPLIFGGACSGAIAVFKDVTEATQL 201 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 + V + R ++ + I I S ++ VV E+GTG Sbjct: 202 AEQVTDLRSIQTMLEAI--INSSNDAISVVDENGTG 235 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 143/446 (32%), Positives = 246/446 (55%), Gaps = 30/446 (6%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ 222 ++D++++GV+ + + ++ ++N+ A + L +++ R + E + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 223 HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV------------------ANAP 264 + + + + I + + R++ + S Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEELK 157 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +++G M++L L+ IA S S+V++ GESGTGKE+VA A+H+ S RR PF Sbjct: 158 GRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPF 217 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+ E +LESELFG+VKGAFTGA + G + A+ GTLFLDEIG++ +Q K Sbjct: 218 VKLNCAALSEGVLESELFGHVKGAFTGAV-QSRPGRFELASGGTLFLDEIGEISPSMQVK 276 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ E +G + ++VD+R+I+ATN++L Q + EG FR+DL+YRL VIP+TLPPL Sbjct: 277 LLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPL 336 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RERQ D+ LL+ F+ + LG G+ + +++L + +PGN+REL N++E+ ++ Sbjct: 337 RERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAA-LL 395 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 + ID LP +LL + + L L + +EK++IR A++ Sbjct: 396 CNDSRIDLRHLPGDLL---------PAQSQSSFLELAMMEENPVRYVEKELIRLAMAESG 446 Query: 565 SK-KQVADELGIGIATLYRKIKKYEL 589 +VA +L +G +TL+R++K+ +L Sbjct: 447 GNVSEVARKLSMGRSTLWRRLKEMKL 472 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 159/519 (30%), Positives = 263/519 (50%), Gaps = 28/519 (5%) Query: 94 REKAFLGTPVILQDRCV---GVISLIAVTHEQQEHIS-----DNLREFSDYVRHISTIFV 145 + + I +R + ++S++ + E I N+ + + Sbjct: 32 QNNVSIFLRKINDNRLIPANSMLSMVTFFASRGEEIEVVVEGANVDNAIKEFKGFFYNEL 91 Query: 146 SKLLEDQGPGDNISKI---FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 K E++ + + + + +++ G++V D+ + N+ A G+ + IG Sbjct: 92 GKEKEEKTTYELLKNTSIAYEKIFNSIGSGLIVTDENGAIMIFNKAAESITGINMDQAIG 151 Query: 203 KPIR--FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH------NIQGRQLFLMAFHQS 254 K I+ + G + + +++ + I+G + F Q Sbjct: 152 KKIQEVMSDIKIADVLKTGKEEMNKKLKIGTNVVLTNITPIYTGTKIEGAVIVFYDFPQI 211 Query: 255 H--TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + + + + ++G ++ + S+ A + S+V++ GESGTGKE+VA A Sbjct: 212 EYLENELKRDRKLDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANA 271 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH S R++KPFI +NCAAIP LLESELFG+ +GAFTGA K G + A+ GT+FLD Sbjct: 272 IHYASKRKDKPFIRVNCAAIPVTLLESELFGHERGAFTGAVTQ-KIGKFELADGGTIFLD 330 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGD+P +Q KLLR I+ +E +G I+VD+RII+ATN++L + I EG FREDL+Y Sbjct: 331 EIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYY 390 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIP+ LPPLRER+ DI LLV +F+ ++L + ++ L + WPGN+RE Sbjct: 391 RLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRE 450 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E + + + ID LP + N TT D + L +EE E Sbjct: 451 LENIIERCITL-SDTDYIDYEDLPQYIRNETTTVSDDDIIYLGENSEL-----LTMEEYE 504 Query: 553 KQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 ++I+ A+ R+ S + LG+ T+ K +K+ L++ Sbjct: 505 YKIIKAAIQRYKSFNKAGKVLGLTHKTIAAKARKFGLVD 543 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 145/453 (32%), Positives = 230/453 (50%), Gaps = 18/453 (3%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL 210 P + ++D + GV+ +D R+ +N+ A + G ++ + + L Sbjct: 89 QTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAGEDVTERSLTSLRL 148 Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQLH-------------NIQGRQLFLMAFHQSHTS 257 H + + + +G+L I G + Sbjct: 149 PDHGLLDCLHGRELHDARRELATPLGKLQFFVTRTPIRDGVGRIIGAVEIARDMREIRKL 208 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 D + +VG + R+A + + + + GESGTGKE+ ARA+H S Sbjct: 209 ARTLVDADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRGESGTGKELFARAMHAES 268 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 GR+ PF+ INCAA+PEQLLESELFGY +GAFTG GK GL ++A GT+FLDEIGDM Sbjct: 269 GRK-GPFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGLFESARGGTVFLDEIGDM 327 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL QAK+LR ++ + + IG + + VD RII+ATN+ L + + +G+FR+DL+YR+NV+ Sbjct: 328 PLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERMVEDGRFRQDLYYRINVL 387 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 P+ +PPLRER+ DI LL ++FL R+G P + LR H WPGN+REL N++ Sbjct: 388 PMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALARLRSHEWPGNVRELKNVV 447 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E + V D +L + L G + + +L + + EK+++ Sbjct: 448 ERAAILAGGAVVDDQFILFSHELGKGVFNAARTASAAGQGDTLKEQ----VANFEKKIVE 503 Query: 558 EALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 + + R S ++ A LGI L K++++ ++ Sbjct: 504 DVVRRAPSIRKAAKILGISHTALLDKMRRHGVI 536 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 162/459 (35%), Positives = 244/459 (53%), Gaps = 37/459 (8%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI--RFR 208 +S T++D++ GV VD + R+ N+ A + GV ++ IG+P FR Sbjct: 69 QSAKQHILSPQTETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFR 128 Query: 209 PLTFES----NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP 264 ES FT + IV+ G+ I L+ HT V Sbjct: 129 ANVCESTCVLKFTMETRKPIVNKSVAILRADGREIPIS-VSTALLKNASGHTIGGVETFR 187 Query: 265 D-------------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 D + + +V + M +L ++ +A S S+V++ GESGTGKE+++R Sbjct: 188 DLSLVETLRKEIDRQYRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSR 247 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 A+H LS R PF+AINC A+P+ LLESELFG+V GAFT A N + G A GTLFL Sbjct: 248 AVHSLSSRAAGPFVAINCGALPDTLLESELFGHVAGAFTDARKN-RAGRFAQAEGGTLFL 306 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGD+ LQ +LLR +E R P+G+S + ++RI++A+N++LAQ +AEG FR+DL+ Sbjct: 307 DEIGDVSPALQVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLY 366 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YR+NV+ + LP L R+EDI LL +F+ + G++ + + + +H WPGN+R Sbjct: 367 YRINVVKLELPTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIR 426 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N++EY + G +I LP L + L D+GG +L + Sbjct: 427 ELENVIEYAFILCRGG-LIQPAFLPEYLHAHA--------------CVLPDSGGLSLRDN 471 Query: 552 EKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 E + IR+AL R+ ++ A ELGI TL RK+K+ + Sbjct: 472 EARAIRDALDRNQWRRMATARELGIDKNTLRRKMKRLNI 510 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 146/462 (31%), Positives = 245/462 (53%), Gaps = 41/462 (8%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF------- 212 + ++D+M +GV +D + R+ N++ G + +G+ RF + Sbjct: 12 RFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGFSHCLGTLCP 71 Query: 213 ------------------------ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFL 248 E Q V DD EL IG + + Sbjct: 72 ADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNGEL-IGIVETVTDMTELQ 130 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 A H++ + + + ++G+ VM+++ + A S S+V++ GESGTGKE+ Sbjct: 131 KARHKAEEATRLLGQH--YSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKEL 188 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 +ARAIH S + ++PF+ +NC+A+ E LLESELFG+VKGAFTGA + + G + A+ G+ Sbjct: 189 IARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRD-RAGRFEEAHRGS 247 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 +FLDEIG++ +Q KLLR ++ RE+ +G S +DIR+I AT+++L + +A+G FR+ Sbjct: 248 IFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQ 307 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRL V PITLPPLR+R+ED+ LLV++F+ G G+AP+ + ++ ++ WPG Sbjct: 308 DLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPG 367 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N +E+ V+ SGE I LP ++ T + EA + Sbjct: 368 NVRELENAIEHAF-VLTSGEQIQVNDLPAEII----TPRPSPERAREAGVPRTAGSRQHH 422 Query: 549 EEMEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 E+ +++ + L + K A +LG+ +++ +KK+ + Sbjct: 423 EQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 162/466 (34%), Positives = 245/466 (52%), Gaps = 31/466 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR----F 207 +++ + T+I D V V+D++ V+ A K V N IIG+PI + Sbjct: 90 YNSYNDLLAFYNTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDY 149 Query: 208 RPLTFESNFTHGHMQHIVSWDDKSEL--------------IIGQL--------HNIQGRQ 245 + L + G + +L IIG + + Sbjct: 150 KDLEILQSLHDGKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEK 209 Query: 246 LFLMAFHQSHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 LF M+ VA D + G+ V+++ +L ++ S+V+++GESG Sbjct: 210 LFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGV 269 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKEV A+AIH+ S N PFI+INC AIPE L ESELFGY +GAF+GA++ GK G I+ A Sbjct: 270 GKEVFAKAIHEASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELA 329 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L + + +G Sbjct: 330 QGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKG 389 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ L + Sbjct: 390 TFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHY 449 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++E LV G +I LP + + E S +S + L + Sbjct: 450 NWPGNIRELRNVVERLVVFATDG-IIKQEYLPFHTNDTLENETSHSLLLSNNNTIL--SL 506 Query: 545 GTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 ++E EK++I AL + K + A +LG+ ATLY ++K+ L Sbjct: 507 QEEMDEHEKKIIERALRILDGNKLECAKQLGVTRATLYNRLKRLGL 552 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 156/459 (33%), Positives = 229/459 (49%), Gaps = 34/459 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFES 214 + + D + + + VVD +V N+ A + G+ I+G PI F L + Sbjct: 120 RQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIEEFFSNLIITA 179 Query: 215 NFTHGHM-----------------------QHIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 + +E I ++ N+ + A Sbjct: 180 VLASSQAISDKYHQPKPGAHVLINAAPICCDGSIIGSIAAERDITEIVNLTQQLCATNAK 239 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 S + G V+RQ +IA S V++ GESGTGKEV AR Sbjct: 240 VMSLKREIKEINAQPDPFAAICGHNTVLRQEIATARKIAISSVPVLIRGESGTGKEVFAR 299 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S RR PF+ +NC AIP L ESE FGY GAFTGA GK GL + A+ GTLFL Sbjct: 300 AIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAHGGTLFL 358 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG++P +Q KLLR ++ + +G P+QVD+RII+AT++NL I + +FR DL+ Sbjct: 359 DEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQEFRHDLY 418 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+ + LPPLR+R++DI LVH + G + P+V+ + ++ WPGN+R Sbjct: 419 YRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAVFLEYDWPGNVR 478 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N++E LV ++ G V+ LP +L G + + +L A E M Sbjct: 479 ELYNVLERLV-ILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLP------AATERM 531 Query: 552 EKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 E+ +I +AL+ +K Q A +LGI +TLY K+++ L Sbjct: 532 ERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGL 570 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 164/496 (33%), Positives = 245/496 (49%), Gaps = 31/496 (6%) Query: 100 GTPV-ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIF--VSKLLEDQGPGD 156 P+ VGV+ + I + ++ V + + L E Q Sbjct: 154 AAPICNADGDVVGVL-----DVSGEAGIERGMERLAEVVLMGAKLIEQSLHLTELQRDFH 208 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 + + M G + +D + +N+ K LG + ++G F++ Sbjct: 209 FARQGIEKAGEMMRDGFIAIDSRGIITEINREGAKLLGRKREELVG---HLAADVFDNRR 265 Query: 217 THGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 + + + +S+ + +L + Q M + S A + VG Sbjct: 266 WSFNGKSLYMQSSESDNLTSRLVKVTDEQGAPMG---AIGVLSPAPREERSQETMWVGRS 322 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 + + + + A + S+V++ GESGTGKE+VAR +H+ S R NKPF+AINCAAIP L Sbjct: 323 QATQSVFSRADKAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAIPATL 382 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 +ESELFGY GAFTGA G G + A GT+FLDEIGDMP +QA LLR ++ RE++ Sbjct: 383 IESELFGYADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQEREVVR 442 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 IG S P VD+R+++ATN++L+ I +G FR DL+YRL V+ I +PPL R +DI LV Sbjct: 443 IGDSRPRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIYDLVP 502 Query: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 YF+ R G G+ +V E L + WPGN+REL N ME +V + + + LP Sbjct: 503 YFVKKICRASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAM-AEHSYLTTDDLP 561 Query: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGI 575 + N +S G T LE+ K+ I +AL+ N K A LGI Sbjct: 562 AEIAKN---------------VSAVSCGETLLEQQTKKAIMQALAETNGKIAPAARLLGI 606 Query: 576 GIATLYRKIKKYELLN 591 G TLYRKI++ + + Sbjct: 607 GRTTLYRKIEELGIKS 622 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 152/495 (30%), Positives = 247/495 (49%), Gaps = 29/495 (5%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQ 171 +I V + ++ +S ++ +L + + + M+ + + Sbjct: 142 IIGASLVNELTERMGGHSIFIYSRSSIRLALETAVELADQRRSEIEKRQKIQAMMRAVHE 201 Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 G+L VD + +N A K LGV ++IGK I + + + +++ K+ Sbjct: 202 GILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVAPEIKLDDVFKRGKPLLNVAQKT 261 Query: 232 EL---------------IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 + +IG + IQ Q A + E ++G+ Sbjct: 262 KQGMLLVNRIPVVHQGELIGAVATIQDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKN 321 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 +L A + +++++ GE+GTGKE+ A++IH S R PF+A+NCAA+PE + Sbjct: 322 STFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHNASNRNRHPFVAVNCAALPESI 381 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 LESELFGY +GAFTGA GK GL + A+ GT+FLDEIG+M L LQ++LLR ++ +E++ Sbjct: 382 LESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMR 441 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 +G+ I +D+RII+ATN++L + +G FR+DL+YRLNV+ I LPPLRER +D+ L Sbjct: 442 LGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLNVLSIELPPLRERLDDLPDLFR 501 Query: 457 YFLHLHTRRLGSV-YPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +FL + +L + ++ +L H WPGN+REL N+ E + ++ + +D L Sbjct: 502 FFLKNY--KLDKQLIEKVLSIMLPVLCHHNWPGNIRELENIAERVSVLLKAHVTMDEVL- 558 Query: 516 PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELG 574 E S + +E E+Q I + L SK + A LG Sbjct: 559 ---------AEVKKELFGSHIEILDSTDLTKEVENWERQRILQVLREVRGSKTKAAALLG 609 Query: 575 IGIATLYRKIKKYEL 589 I TL+RKIK Y + Sbjct: 610 ISRTTLWRKIKDYGI 624 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 162/466 (34%), Positives = 241/466 (51%), Gaps = 31/466 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR----F 207 + + + T+I D V V+D + V+ A K V N IIG+PI + Sbjct: 6 YKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDY 65 Query: 208 RPLTFESNFTHGHMQHIVSWDDKSEL--------------IIGQL--------HNIQGRQ 245 + L + G + +L IIG + + Sbjct: 66 KDLEILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEK 125 Query: 246 LFLMAFHQSHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 LF M+ VA DE + G+ V+++ +L ++ S+V+++GESG Sbjct: 126 LFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGV 185 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKEV A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK G I+ A Sbjct: 186 GKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELA 245 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L + + +G Sbjct: 246 QGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKG 305 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ L + Sbjct: 306 TFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHY 365 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++E LV G +I LP + + +S + L + Sbjct: 366 NWPGNIRELRNVVERLVVFATDG-IIKQEYLPFHTTETLDNHTAHSLLLSNNNTIL--SL 422 Query: 545 GTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 ++E EK++I AL N K + A +LG+ ATLY ++KK L Sbjct: 423 QEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGL 468 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 146/469 (31%), Positives = 243/469 (51%), Gaps = 27/469 (5%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI- 205 +L E+ + + +I + D+ + VVD+ +N+ K G+ + +IGKP Sbjct: 223 ELAEEVTNLKQVRTMLEAIIQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPAN 282 Query: 206 -------RFRPLTFESNFTHGHMQHIVSWDDKSELI--------------IGQLHNIQGR 244 E+ ++ V ++K ++ +G +H++ Sbjct: 283 TDISEGESMHLKVLETRRPVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGVIHDVSEI 342 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 ++ +++ A + + ++G+ M A +P+++++ GESGT Sbjct: 343 KMLTAELNRARQIIRTLEA--KYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGT 400 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A AIH S R+ FI +NCAA+ E LLESELFGY GAF+GA GK GL + A Sbjct: 401 GKELFAHAIHNESDRKYNKFIRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEA 460 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 N G++FLDEIG++ +QAKLLR ++ +EI+ +G + I V++R+I+ATN N+ + +A+G Sbjct: 461 NNGSIFLDEIGELTQNMQAKLLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADG 520 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YR+N PI++PPLR+R EDIE L + R G G++ + L + Sbjct: 521 TFREDLYYRINRYPISIPPLRQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAY 580 Query: 485 RWPGNLRELSNLMEYLVNVVPSG-EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 WPGN+REL N++ + + E I+ LP L + T + + Sbjct: 581 HWPGNVRELENVLGRAMIFLNPHMEWIEKDHLPVFELEQKENDTDQGTGFDFPDIE-GEK 639 Query: 544 GGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 A+E+ E +I++ L +H+ ++ + A LG+ I LY K+ KY L N Sbjct: 640 LSVAVEKFEAHLIQQTLEKHHFNRTKTAKALGVSIRNLYYKMDKYGLAN 688 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK---IFATMIDN 168 VI E + + ++ I + E Q + + + + ++ Sbjct: 66 VIHTTGDQAVFDELLQRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYDRIFNS 125 Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWD 228 G++ +D + N A K +G + +IG+PI+ + + + ++ Sbjct: 126 THDGMIFIDINEEIILFNHMAEKMVGKKREEVIGRPIK--EVIPSTKMPRILKTRVPEYN 183 Query: 229 DKSEL 233 K L Sbjct: 184 QKQLL 188 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 150/459 (32%), Positives = 241/459 (52%), Gaps = 20/459 (4%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI---I 201 ++ + S+ F T++D +G++ VD + VN A+K G+ + + Sbjct: 181 AKRVARVRRQEQERSEQFRTILDYSTEGIITVDAAGAINLVNAAAMKITGLSGEAVGLAV 240 Query: 202 GKPIRFRPLTFESNFTHGHMQHIVSWDDKSELI-----------IGQLHNIQGRQLFLMA 250 K + L+ + + + + + + +G + Q Sbjct: 241 DKLLPQLGLSRVLASGRAELGEVETVNGQQVAVNRVPIIIRGQAVGAVATFQPVADIQAL 300 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + ++G+ +RQ + + S+V++ GE+GTGKE+ A Sbjct: 301 EGKIRQKIYKRGLVARLTFDDILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFA 360 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 ++IH S RR PF+A+NCAA+PE LLESELFGY +GAFTGA+ GK GL + A+ GT+F Sbjct: 361 QSIHNASSRRKGPFVAVNCAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGTIF 420 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEI ++ LQ +LLR ++ REI+ +G I VD+RII+ATN++L Q + G FR+DL Sbjct: 421 LDEISEISPKLQGRLLRVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDL 480 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YR++V+ + LPPLRERQEDI L+ +FL L+ R I PD +LR++ WPGN+ Sbjct: 481 YYRVDVLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNRPVKEIGPDAQAMLRRYHWPGNV 540 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N+ E L V+ SG VI + + L T E ++E G + Sbjct: 541 RELRNIAERLA-VLASGPVIGARDIAAVL----TGETGRRKAINETAEPAAALAGANDVD 595 Query: 551 MEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYE 588 + + ++ +AL + + A LGI TL+R++K+Y+ Sbjct: 596 LNRAILLKALEEADYHYGRAAARLGISRTTLWRRLKQYQ 634 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 159/369 (43%), Positives = 221/369 (59%), Gaps = 15/369 (4%) Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANA----PDEPHIEQLVGECRVMRQ 281 S +K+ + L I FL+ + F + +++ + G+ + + Sbjct: 372 SCREKAIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIE 431 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 +K+LI + A S +V++ GESG GKE+ AR IH LS R +KPF+AINCAAIPE LLESEL Sbjct: 432 VKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESEL 491 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FGY +GAFTGA GK G I+ A+ GTLFLDEIGDMPL +Q KLLR I+ RE IG+++ Sbjct: 492 FGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNT 551 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 P +VDIRII+ATNQ LA+ + EG+FR DL+YRLNV I +PPLRER++DI LLV+ F++ Sbjct: 552 PRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNE 611 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN 521 R + + + IL + WPGN+REL N++E + G +I LP L + Sbjct: 612 FCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYL-AEGNLIKPEHLPAQLTS 670 Query: 522 NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV-ADELGIGIATL 580 +S ++ A+ E+EK++I E L N K A LGI ATL Sbjct: 671 KA---------LSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRATL 721 Query: 581 YRKIKKYEL 589 Y+KIK+Y + Sbjct: 722 YQKIKEYGI 730 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 168/521 (32%), Positives = 257/521 (49%), Gaps = 39/521 (7%) Query: 98 FLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLL-EDQGPGD 156 +I D + + A ++E I + + I +++ + Sbjct: 42 EYNCAIIYVDDSFTAL-IDAFSYELAVIILNEND------EPLCCITSQQMIPFLYKSYN 94 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR----FRPLTF 212 + + T+I D V V+D + V+ A K V N IIG+PI ++ L Sbjct: 95 ELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEI 154 Query: 213 ESNFTHGHMQHIVSWDDKSEL--------------IIGQL--------HNIQGRQLFLMA 250 + G + +L IIG + +LF M+ Sbjct: 155 LQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMS 214 Query: 251 FHQSHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 VA DE + G+ V+++ +L ++ S+V+++GESG GKEV Sbjct: 215 HEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVF 274 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK G I+ A GTL Sbjct: 275 AKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTL 334 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L + + +G FRED Sbjct: 335 FLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFRED 394 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ L + WPGN Sbjct: 395 LYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGN 454 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E LV G +I LP + + +S + L + ++ Sbjct: 455 IRELRNVVERLVVFATDG-IIKQEYLPFHTTETLDNHTAHSLLLSNNNTIL--SLQEEMD 511 Query: 550 EMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 E EK++I AL N K + A +LG+ ATLY ++KK L Sbjct: 512 EHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLRL 552 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 179/603 (29%), Positives = 294/603 (48%), Gaps = 53/603 (8%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVD----ENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 L + ++ + +++ + + +V AGT K +G G LL+ Sbjct: 77 LENMLSHVECYI-IISDEQGVILSVVKALGGNGFKLEAGTIWTEKTIGTCSHGMCILLKS 135 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQD-RCVGVISLIAVTHEQQE 124 ++ LC A P+ ++ G +++ + Sbjct: 136 PIQ--------------LCGPEHFSHIFENIACSSAPIFDENGNLEGTLTITSPN----- 176 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 + + + ++ + ++IF ++N ++ +L DD+ ++ Sbjct: 177 -LRSHNSQTLGLAISMAMGIQKQFQIAL-----QNEIFDAALENTEEIMLFSDDDGKIIR 230 Query: 185 VNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNFTHGHMQHIVSWDDKSELI--- 234 N ALK + + ++IG + F E+ T H+ + + K + Sbjct: 231 TNMNALKIIELFGRDLIGSQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYTKKKLFLTSI 290 Query: 235 --IGQLHNIQGRQLFLMAF-HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 I I G + L H + S A + + ++G +LK + + A Sbjct: 291 KPIKSKDKISGYIVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMKLKSMAKKFAH 350 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S++++ GESGTGK+V A+AIH R N P+IA+NCAAIP+ L+ SELFGY GAFTG Sbjct: 351 FNSNILIQGESGTGKDVYAQAIHFE-NRPNGPYIAVNCAAIPQNLIASELFGYEGGAFTG 409 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A GK G I+ AN GTLFLDEIGDMPL LQA LLR +E + I+ +G S I VD R+I+ Sbjct: 410 AERQGKPGKIELANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLIT 469 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NL + +FREDL+YR++V +++PPLRER DI L+ +F+ +++ G P Sbjct: 470 ATNKNLLDLVKNNQFREDLYYRISVFKLSVPPLRERGSDIVQLIEHFIRIYSSNQGIDEP 529 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN----NGTTEQ 527 ++ +L ++ WPGN+R+L N + Y V + G +I LP +L+ +G T Sbjct: 530 ILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMSNEG-IIRPENLPEEILSYQPPSGLTLA 588 Query: 528 SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKK 586 E S + LD+ +++E+EK+ I +AL N+ + A LG+ +TLYRKIK+ Sbjct: 589 QPEPEPSPNEIILDNTP--SMKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIKE 646 Query: 587 YEL 589 YE+ Sbjct: 647 YEI 649 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 151/459 (32%), Positives = 236/459 (51%), Gaps = 39/459 (8%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFE 213 T++ ++++ + +V+ + + + N+ A K + + IIG+ ++ L Sbjct: 11 TLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVL 70 Query: 214 SNFTHGHMQHIVSWDDKSELI---------------------IGQLHNIQGRQLFLMAFH 252 N + + DK LI I + + Sbjct: 71 ENQQPVRDIYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSEEL 130 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 Q + N D+P + G ++ + + ++A + +++++ GESG GKE+ A+A Sbjct: 131 QQLKQQMIQNNRDDP-FSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQA 189 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH+ S R K FI INC AIP L ESELFGY GA+TGA+ GK G I+ A+ GTLFLD Sbjct: 190 IHEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLD 249 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 E+G++PL +Q KLLRA++ +EI IG +P ++D+RII+ATN+ L + G FR DLFY Sbjct: 250 EVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFY 309 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNV +PPLRER +DI L H+F + + P + + + L + WPGN+RE Sbjct: 310 RLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIRE 369 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N +E L+ + E+ +S +L +S VS+ LSL D E +E Sbjct: 370 LRNFIERLIVLHEGSEIYESDIL-----KLLPQAKSFSEPVSQTTLSLTDER----ESLE 420 Query: 553 KQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 K I + L + + +K A +LG+ A LY+KIKKY + Sbjct: 421 KTRILQTLQQTYGNKSITAKKLGMSRANLYKKIKKYRIT 459 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 161/469 (34%), Positives = 249/469 (53%), Gaps = 41/469 (8%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 +N+ + + D + V++VD++ ++ +N+ L V + IG+P Sbjct: 5 LKNFENVVDVVDRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVEVDHN 64 Query: 206 RFRPLTFESNF-------------THGHMQHIVSWDDKSELIIG-----------QLHNI 241 P+ +S + I +D S I+G +L ++ Sbjct: 65 SKWPVVLKSGEFDIAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDL 124 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + L + + + + M K+ + A + +V++ GE Sbjct: 125 ADKNKLLEKKLDHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGE 184 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SG GKE+ A+AIH S R + PFI +NCAAIPE LLESELFGY GAFTGAS GK G Sbjct: 185 SGVGKEIFAQAIHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKF 244 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + A+ GTLF DEIGDMP +QAKLLR I+ E+ +G +VD+RII+ATN+NL + + Sbjct: 245 ELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELV 304 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 A FREDLFYR+NV+ + +PPL++R+EDI LL FL+ + +G I+ + VE+L Sbjct: 305 ATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGEN-KQISQEAVEVL 363 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 +K+ WPGN+R+L N+++ L V VI+ + +P LL ++SE+ + Sbjct: 364 QKYDWPGNIRQLKNIIQRLA-VNAETTVIEKSDIPIKLLKQ--------LQISESPSYPE 414 Query: 542 DAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 + +E++EK++IRE L ++ +K A L I +TLYRK+KKY L Sbjct: 415 EGLNEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKKYGL 463 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 278/505 (55%), Gaps = 40/505 (7%) Query: 110 VGVISLIAVTH----EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM 165 + ++S+ + ++ S N + +S I + + N K+ + Sbjct: 30 INIVSIEVFPKTVFIKIEDIYSHNKDLIKKKLYEVSGIIMVCEINLLEYEKNERKLL-AI 88 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-----------------FR 208 ID +D GV+ V+ ++ N K +++II K IR ++ Sbjct: 89 IDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDIIDKDIRTVLEDPLIIDLIKSGKDYK 148 Query: 209 PLTFESNFTHGHMQHI---VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 + + N G +Q++ ++ D S IG + +I + + SV + D Sbjct: 149 NVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVSSITDIKKVIEL-------ASVVSKMD 201 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + ++G + ++ +K ++ ++ S S+V++ GESGTGKE+ ARAI +LS R++K F+ Sbjct: 202 KEAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGKELFARAIQRLSNRKDKRFV 261 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 +NCAA+PE L+ESELFGYVKG+FTGA+ NGK GL + AN GT+FLDEIG++ ++LQAKL Sbjct: 262 ILNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANEGTIFLDEIGELSMVLQAKL 321 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ + IG+ + +VD+RII+ATN+NL + + +G+FREDL+YRLNVIPI +P LR Sbjct: 322 LRVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEFREDLYYRLNVIPIFIPSLR 381 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER EDI +V +F+ +L G+ D ++ L K+ WPGN+REL N++E +N+ Sbjct: 382 ERMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNWPGNIRELQNVVERAMNLC- 440 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G+++ L N + + E + D +E EK+ I +AL ++ + Sbjct: 441 DGKLLTKKHLMIN-------SYINPISLDEVKEASDLKLKDIVEACEKEAIIKALKKNKT 493 Query: 566 KKQVADELGIGIATLYRKIKKYELL 590 ++ A LG+ T+ KIKKY ++ Sbjct: 494 FRKTAKVLGVSHTTIINKIKKYNIV 518 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 155/499 (31%), Positives = 256/499 (51%), Gaps = 20/499 (4%) Query: 108 RCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMID 167 + +I+ I E Q + + + +D + + + S+L + T + Sbjct: 222 HTLALITAITKAIEAQLKLHKSYEKLADNNQQLL-LANSELSAANQQILTTHDLLRTTLS 280 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQN-----NIIG---KPIRFRPLTFESNFTHG 219 + ++ +D + + +N+TA K L + + NI G K E Sbjct: 281 LTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAEGKDLTD 340 Query: 220 HMQHIVSWDDKSELIIGQ---LHNIQGRQLFLMAFHQSHT----SFSVANAPDEPHIEQL 272 + + I+ L + + L ++ F + T + A H + L Sbjct: 341 KEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKRAGTNASFHFDDL 400 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +GE + L + + + ++++++GESGTGKE++A++IH R PFIA+NCAAI Sbjct: 401 IGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YRPEGPFIALNCAAI 459 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P L+ESELFGY G+FTGA G+ G I+ A+ GTLFLDEIGDMPL +QA LLR +E R Sbjct: 460 PRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDIQAVLLRVLEDR 519 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 ++L IG VD R+I+ATN++L + + E FRED+++RL+V+ I +PPLR R DIE Sbjct: 520 KVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTIHIPPLRTRSGDIE 579 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 L YFL + R G ++ + + +L + WPGN+R+L N + Y +N+ +I++ Sbjct: 580 KLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIYGINL-SDNSLIEA 638 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-TALEEMEKQMIREALSRHNSK-KQVA 570 LP ++L E+ E + + G + L+EME I AL + N+ + A Sbjct: 639 RHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNAIIMALEKTNNSVTKAA 698 Query: 571 DELGIGIATLYRKIKKYEL 589 L I +TLYR++++ + Sbjct: 699 KILNISKSTLYRRLRELNM 717 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 160/509 (31%), Positives = 260/509 (51%), Gaps = 46/509 (9%) Query: 112 VISLIAVTHEQQE--HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNM 169 +I + Q++ + + + + + + E+ + +++++ Sbjct: 72 IIEATGSSEVQRKIHKLKHQGTAVMEALAGNLLMSILQAKEELLEVKKLKSELWAILNSV 131 Query: 170 DQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI--------------RFRPLTFESN 215 + + V D+ +++ N + G+ + +GK I + +P+ + Sbjct: 132 QEAIEVADNSGLIKYTNPAFTRVTGIPEAQRVGKNIFEASPHGALAQALVKQKPVVGYRS 191 Query: 216 FTHGHMQHIVS------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP----- 264 G ++S + + E + I + +S T A Sbjct: 192 KVGGSGVEVISNAAPILVEGEVEGAVVVFQPITDILKLMDELQKSTTIIENLYAKIDQIT 251 Query: 265 -DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 + + L G +V + + A S S V++ GESGTGKE+ A AIH+ S RR KP Sbjct: 252 GSKYTFDDLTGSSKVFAATIDMAKKAAKSDSPVLLTGESGTGKELYAHAIHQASQRRGKP 311 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 FI I CA++PE+LLESELFG+ KGAFTGA K G ++ AN GTLFLDEIG+M LQ Sbjct: 312 FIKIGCASVPEELLESELFGHEKGAFTGAVKT-KLGKVELANGGTLFLDEIGEMNPYLQG 370 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KL+R ++ +E +G S I+ D+R+I+ATN +L + +G+FRE+L++ LNVI + LPP Sbjct: 371 KLMRLLQDQEFERVGGSETIRSDVRVITATNIDLKSLVRKGRFREELYFLLNVIELNLPP 430 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LR+R+EDI +LV +F+ R+LG G+APD +++L + WPGN+REL N++E + V Sbjct: 431 LRQRREDIPVLVEHFIGKLNRKLGKKVRGVAPDALQLLSGYDWPGNIRELENVIERAM-V 489 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 EVI P + E + TE+ L++ME+ M++ AL+R+ Sbjct: 490 SVETEVIGRQHFSPYIGQFTNAETTQCTEI------------VPLDKMEQMMLKAALARY 537 Query: 564 N----SKKQVADELGIGIATLYRKIKKYE 588 KK+ A L I +ATLY K+KKY+ Sbjct: 538 GESLEGKKKAAQALNISLATLYNKLKKYK 566 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 162/519 (31%), Positives = 272/519 (52%), Gaps = 36/519 (6%) Query: 100 GTPVILQ-DRCVGVISLIAVTHEQ--QEHISDNLREFSDYVRHISTIF--VSKLLEDQGP 154 P++ + +G ++L+ E+ +++ S+ +V ++ K+ Sbjct: 167 AAPILDEMGEVLGTLALVQDMGEKPWEKNRSNLHIHSLGWVSSLAEAIGNQIKIQNSYDV 226 Query: 155 GDNIS-------KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR- 206 + ++ + +++ +D+GV+ ++ R+ N + L V I G+ I Sbjct: 227 LNQVNNDLRKATETLKIILEFIDEGVITIEPNGRILSSNHEGSRILNVNHGEIRGRNIGE 286 Query: 207 -------FRPLTFESNFTHGHMQHIVSWDDKSELIIG-QLHNIQGRQLFLMAFHQSHTSF 258 + +++V+ ++ + ++ + QG A + + S Sbjct: 287 FLLPRSALMDYVADKKTVDYMEEYVVNGREEKQYLVSLRPVYKQGNDELDFAILRFNHSD 346 Query: 259 SV-------ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + A + E +VG+ M + K L R A + +V+++GESGTGKE+ A+ Sbjct: 347 KINALVNTRSGAVAKFRFEDIVGQSEAMLKAKALARRFARTRENVLLLGESGTGKELFAQ 406 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S R PFIA+NCAA+P L+ESELFGY G+FTGA NG+ G I+ AN GTLFL Sbjct: 407 AIHN-SHRPGGPFIAVNCAAMPRNLIESELFGYESGSFTGAEKNGRPGKIELANGGTLFL 465 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMP+ LQA LLR ++ + ++ IG + QVD R+I+ATNQ+L E KFREDL+ Sbjct: 466 DEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRLITATNQDLKLSAQERKFREDLY 525 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 +R++V+ I +PPLR R DI +L +F+ + +R+G I+P+ + ++ WPGN+R Sbjct: 526 FRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLPAAVISPEAKRRILEYNWPGNVR 585 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 +L N M Y VN+ G+ I + LP L T + + L +++++ Sbjct: 586 QLENAMIYAVNLSEEGQ-IMLSHLPKELSEKRTALPMVSEKECDKPEEL-----FSMKDL 639 Query: 552 EKQMIREALSRHNSKKQVA-DELGIGIATLYRKIKKYEL 589 EK I++AL R + +A D LGI TLYRK+K++ + Sbjct: 640 EKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHNI 678 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 248/472 (52%), Gaps = 42/472 (8%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 + K+ E+ + T +D+ G+L+ D+ N ++ V+ L+ + + +++ K Sbjct: 224 IEKMAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMVSPPLLELFNLDKKDVLHKK 283 Query: 205 IRFRPLTFESNFTHGHMQHIVS---------------WDDKSELIIGQLHNIQGRQLFLM 249 + + + VS K +IG + + RQL + Sbjct: 284 VDIVMPQLKLDQVFKTEAAEVSDLHERNGIKYIVHRIPIKKEGKVIGAIGKVMFRQLNEV 343 Query: 250 AFHQSHTSFSVANA-----------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + + + A + ++ + M +LK+ ++ A S+V++ Sbjct: 344 SALFKRLQKAESKASFYHQQLQKSETARFTWDHILSKHPYMDKLKKSAAKAAKGRSTVLI 403 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE+ A AIH S R + F+ +NCAAIPE LLESE FGY +GAFTGA GK Sbjct: 404 RGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLLESEFFGYDEGAFTGAKQRGKV 463 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G AN GTLFLDEIGDM + LQAKLLR ++ RE +G +S I+VD+RII+ATN++L Sbjct: 464 GKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAATNRDLE 523 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + EG+FREDL+YRLNVI + +PPLRER D+E L + LG+ GI+P Sbjct: 524 KMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITGISPKAK 583 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 E L ++ WPGN+REL N++E + G I LP L++ T + + ++ Sbjct: 584 ESLLQYNWPGNVRELKNILERAMTFAEHGN-IQVEDLPDYLIDQLTIPKKEKNGLA---- 638 Query: 539 SLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 E+ E + IR+AL++ + +K Q A LGI + LY K+KKYEL Sbjct: 639 ----------EDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKKYEL 680 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 151/491 (30%), Positives = 242/491 (49%), Gaps = 41/491 (8%) Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQT 188 F Y+ + + L+ + I+K + ++ G++V D+ +N + Sbjct: 67 ETEFFKGYIGVMCNAELRDLV--INKLEEINKELEAIFESSHDGIVVADENGVFIRINSS 124 Query: 189 ALKTLGVVQNNIIGKPIR-------------------FRPLTFESNFTHGHMQHI----- 224 + G+ + IIGK + + TF F G I Sbjct: 125 YERITGIPREEIIGKTAQSIVEKGLVSDSVTIHVLKTGQSHTFSQTFRSGRQSVITGSPV 184 Query: 225 VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS-----VANAPDEPHI-EQLVGECRV 278 +++ ++ + ++ +S + V +E E+L+ R Sbjct: 185 FDSNNRIIRVVTNVRDMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRK 244 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M ++ + A + +++ GESG GKEV+A +++ S R+ PF+ INC AIPE LLE Sbjct: 245 MEVVRDSAIKFAKVDAPLLITGESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLE 304 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY GAFTGA G+TGL + AN GT+ LDEIG++PL LQ KLLR ++ +E +G Sbjct: 305 SELFGYEGGAFTGAKKEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVG 364 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++VD+R+I+ATN++L + + + +FR DLFYRLNV+ I +PPLRER EDI LV+Y Sbjct: 365 GKKVVKVDVRLIAATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYL 424 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L + ++ I+ DV + W GN+REL NL+E LV + E I LP Sbjct: 425 LDKYNKKYNVS-KRISGDVYHAFTNYTWVGNVRELENLIERLVVICDRDE-ITLDYLPDE 482 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIA 578 + + D + A EE E++ AL ++ S +Q A++LG+ + Sbjct: 483 MKKAIYVWRDDSIGREQ-------TYKEAKEEFEREFFCRALEKYKSSRQAAEKLGLDHS 535 Query: 579 TLYRKIKKYEL 589 T+ +K KY + Sbjct: 536 TIVKKAAKYGI 546 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 165/518 (31%), Positives = 258/518 (49%), Gaps = 47/518 (9%) Query: 103 VILQDRCVGVIS------LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGD 156 +I +D C I L+ +Q+ + + V KL E Sbjct: 86 IIDEDTCFSEICHKPIDRLVIFNQKQKLTGVLTRIDLINKVHRALENTEDKLAEAF---- 141 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 ++ ++I+ G++VVD + VQ VN + + L ++ G + PL + Sbjct: 142 ETNQRLRSIIEASYDGIIVVDSQGVVQMVNSSYFR-LQDSSHDPAGTSLEQIPLDCHDDV 200 Query: 217 THGHMQ-------------------------HIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 + I+ + ++ LH+ + Sbjct: 201 IKVFQEVMQQGKVAFARYQGENLSELTITGSPILDDQNSPVHVVISLHDFTELNQLRLQS 260 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + ++ L+ M ++ + R++ S+V++ GESG GKEV+AR Sbjct: 261 ARYSEELKSLRTKNQK---DLIFHDTAMERVVKKALRVSEVDSTVLITGESGVGKEVIAR 317 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH+ S R PFI INC AIPE LLESELFGY KGAFTGA+ GK G+++ AN GTL L Sbjct: 318 TIHRNSPRAEGPFIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGMMELANGGTLLL 377 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE+GD+PL LQ KLLRA++ +EI IG + +++++RI++ATN+NL Q IAE KFREDLF Sbjct: 378 DEVGDLPLNLQVKLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLF 437 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+PI +PPLRER+ DI L +FL + + + +V ++ ++ WPGN+R Sbjct: 438 YRLNVVPIHIPPLRERKSDILPLSMHFLEKFNNKYN-FHRLFSSEVFKLFEQYPWPGNIR 496 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL+NL+E L+ ++ E I LPP T + + A E++ Sbjct: 497 ELANLVERLI-IMSEQETIYPDQLPPTFFG------KPSTSPLQISIDEIIPLKEAREQV 549 Query: 552 EKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 E ++I +AL ++ S ++ D LG+ +TL RK + + Sbjct: 550 ESELIVKALKQYRSLRRAGDALGVAHSTLLRKARALGI 587 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 159/451 (35%), Positives = 251/451 (55%), Gaps = 19/451 (4%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FR 208 PG + + ++ D + +++ D E + VN A K G+ + ++GK + F+ Sbjct: 3 KLTPGWQRTSVLESVFDQLSDALVLYDPEFCITGVNHAAEKLFGMSSDEMLGKHCQEIFK 62 Query: 209 PLTFESN--FTHGHMQHIVSWDDKSELI----IGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 E N G Q + S + L + +L ++ Q+F A H + ++ + Sbjct: 63 CSVCEPNCGVLVGLNQPLASANCTVRLHTPNGMERLVVMRTNQMFDDAGHLTGVVATIKD 122 Query: 263 APDE--PHIEQLVGECRVMRQLKRLISRIAPSPSS-VMVVGESGTGKEVVARAIHKLSGR 319 +E P +++ E MR++ + R++ S ++ +++ GE+GTGK++VA+ +H S R Sbjct: 123 ITEEAAPQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKDLVAKTLHYQSVR 182 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 + +PFIAINCAAIPE LLESELFGY KGAFT A A K G+ + A+ GTLFLDEIG++PL Sbjct: 183 QAEPFIAINCAAIPETLLESELFGYEKGAFTDARAQ-KRGIFELADKGTLFLDEIGEIPL 241 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 MLQAKLLR +E + +G I +D+R+I+ATN+NL + + EG FR+DL++RLNVI I Sbjct: 242 MLQAKLLRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQDLYFRLNVIQI 301 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +PPLRER EDI + +F+ + R+ G+ ++L H WPGN+REL N +E Sbjct: 302 LIPPLRERPEDIVPMTKFFIEHYNRKFKRQIEGVTDSAAKLLMAHDWPGNVRELRNAIER 361 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 + ++ G I + LP ++ E G +LE+ E+ ++ A Sbjct: 362 SM-ILEEGAYITAASLPISISRPENGLPLGNAAGMELPTD-----GLSLEDNERSLLVRA 415 Query: 560 LSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 L + ++ Q A L I TL K+KK+ L Sbjct: 416 LEKTEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 161/481 (33%), Positives = 255/481 (53%), Gaps = 38/481 (7%) Query: 138 RHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ 197 R I + L + D + + D + D ++ +A K G+ Sbjct: 99 REIIFFLLDNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKP 158 Query: 198 NNIIGKPIRFRP-----------LTFESNFTHGHMQHIVSW-------------DDKSEL 233 ++IGK + + E +Q + D+ + Sbjct: 159 EDLIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKR 218 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP------HIEQLVGECRVMRQLKRLIS 287 I+ +I + Q+ +++ + M +L L++ Sbjct: 219 IVSISKDITDEEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVN 278 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 ++AP+ S++++ GE+G GKEV+A+ IH +S R PFI INC AIPE LLE+ELFGY KG Sbjct: 279 KVAPTESTILIYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKG 337 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 AFTGA + GK GLI+ A+ GTL LDEI ++PL LQ KLLR ++ +E + +G PI+VD+ Sbjct: 338 AFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDV 397 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 RII+A+N++L + + EGKFR+DL+YRLNV+P+T+PPLRER +DI +L ++FL+++ + G Sbjct: 398 RIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYG 457 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 + +V+EI K+ WPGN+REL N++E +V + + I LP LLN T Sbjct: 458 HS-KQLTNEVMEIFMKYPWPGNVRELENVIERIVII-SENDQITKKDLPGELLNQEETNH 515 Query: 528 SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 S VS + L +A +E Q+I++A+ S + A+ LG+ +T+ RK+KKY Sbjct: 516 SFGVHVSRL-MPLKEASAL----VEYQLIKQAIEECGSSYKAAEVLGVDQSTIIRKLKKY 570 Query: 588 E 588 E Sbjct: 571 E 571 >UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearothermophilus RepID=LIHY_BACST Length = 543 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 155/442 (35%), Positives = 242/442 (54%), Gaps = 41/442 (9%) Query: 157 NISKIFATMIDNM----DQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF 212 N +I+ ++++M GVLV+D + + + N A L V Q +I+ K + R ++ Sbjct: 134 NEEQIWKYVVESMGEETADGVLVLDQDQTILYANSAAYSFLRVKQGDIL-KEEQLREISH 192 Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 + +I + + G QLF+ + + ++ Sbjct: 193 Q--------------------LIKKETSKYGVQLFIFKRAKRGPLLVTKPDKEPYRFGRV 232 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 V + R S + S ++V+++GE+G+GKEV+AR IH+ S RRN PF+A+N AI Sbjct: 233 VTYNPSFEKELRTASIASQSDANVLILGETGSGKEVLARTIHEQSPRRNGPFVALNAGAI 292 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P +L+ SELFGYV+GAFTGA G+ G + A+ GTLFLDEIGDMPL LQ LLR +E R Sbjct: 293 PRELIASELFGYVEGAFTGARKGGRPGKFEVADGGTLFLDEIGDMPLELQVNLLRVLEER 352 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIA-EGKFREDLFYRLNVIPITLPPLRERQEDI 451 +++ IG +++R+I+ATN+NL + IA G FR DL+YRLNV I +PPLR+R+EDI Sbjct: 353 KVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVFTIHIPPLRDRKEDI 412 Query: 452 ELLVHYFLHLHTRRL-GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 E L FL + G ++ +++L+ + WPGN+REL N++E + I Sbjct: 413 ETLSLQFLKNFHQHYCGKGTCHLSNSALQLLQSYNWPGNIRELRNVIERAFLLAIDEPEI 472 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 LP + N A+ ++ + L+++EK+MI +AL S + A Sbjct: 473 LPIHLPEEIQN--------------ANCAIPPSSVNNLKDVEKKMIEQALKESKSLTEAA 518 Query: 571 DELGIGIATLYRKIKKYELLNT 592 +LGI +TLYRKIK++++ T Sbjct: 519 KKLGITRSTLYRKIKQWKIHKT 540 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 170/520 (32%), Positives = 263/520 (50%), Gaps = 47/520 (9%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA 163 +R V ++ E + I+ N + S + S + + K + Sbjct: 37 KSNNRHVDILK----NKETHKKINKNSKVESKISINESECATTIDYKLYSEMKKDIKYYK 92 Query: 164 TMID-------NMDQGVLVVDDENRVQFVNQTALKTLGVVQ------NNIIGKPIRFRPL 210 +++D +++ ++VVD + +++ K + ++I K + Sbjct: 93 SVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCKDPEGKYVGDVI-KDTMLHRV 151 Query: 211 TFESNFTHGHMQHIVSWD--------DKSELIIGQLHNIQ-----------GRQLFLMAF 251 N G +Q I K IIG + I G+ Sbjct: 152 LKTGNIESGEVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNT 211 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 H+ + + S N + + +VG+ +K L + A + S+V++VGESGTGKE+ A Sbjct: 212 HKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAH 271 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 +IH S RR PFI INC AIP +LLESELFGY GAFTGA GK G + AN GT+FL Sbjct: 272 SIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGTIFL 331 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMP+ +Q KLLR I+ RE+ +G + ++D+RII+ATN+NL + + + KFREDL+ Sbjct: 332 DEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFREDLY 391 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNVI I +P LRER+EDI L+ + + + RLG GI+ + E L + WPGN+R Sbjct: 392 YRLNVIRINVPSLRERKEDILLISDFLVKKVSHRLGICIKGISKEAKEYLCNYNWPGNIR 451 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N++E N++ S VI LP +L + + +A + + E+ Sbjct: 452 ELENVIERSANLLDSDFVIKPKHLPKEILKSY---------IVKAPTKENKYLKDIISEV 502 Query: 552 EKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYELL 590 EK++I L ++N K + + LGI A LY+KI +Y ++ Sbjct: 503 EKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV 542 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 170/494 (34%), Positives = 263/494 (53%), Gaps = 31/494 (6%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 I + R + D S + + + ++I + + ++ + + +L V+++ V F+ Sbjct: 86 IVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFL 145 Query: 186 NQTALKTLGVV-QNNIIGKPI-------RFRPLTFESNFTHGHMQHIVSWDD-------- 229 + + K LG+ N +GK R + GH+Q I + + Sbjct: 146 SGSYAKFLGIDDPNEAVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNRNIIATRIPIV 205 Query: 230 KSELIIGQLHNIQ----------GRQLFLMAFHQSHTSFSVANAPD-EPHIEQLVGECRV 278 K IIG + I G Q+ M S+ + + + ++GE Sbjct: 206 KDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLSYYQTELQRLQEGRLSFQSIIGESAK 265 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M+++K + +++ S S+V++ GESGTGKE+ A A+H+ S R + FI +NCAAIP LLE Sbjct: 266 MKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIPRDLLE 325 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 +ELFGY +GAFTGA GK G I+ A GTLFLDEIGDM L +Q KLLR ++ +EI IG Sbjct: 326 AELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIG 385 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 + +VD+R I+AT++NL + + G+FREDL+YRLNV I +PPLRER+ED+ + + Sbjct: 386 GTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFL 445 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + LGS V EI +H WPGN+REL N++E +NV+ G +I LP Sbjct: 446 IKKLNGELGSNVISFDERVREIFMEHDWPGNIRELENVLERAMNVI-EGMIIQVHHLPAY 504 Query: 519 LLNNGTTEQ--SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGI 575 L E+ D+ + + + + +E EK+ I AL + + K+ A LGI Sbjct: 505 LRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAARLLGI 564 Query: 576 GIATLYRKIKKYEL 589 A+LYRKI+KYE+ Sbjct: 565 HRASLYRKIEKYEI 578 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 168/492 (34%), Positives = 249/492 (50%), Gaps = 38/492 (7%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPG--DNISKIFATMIDNMDQGVLVVDDENRVQ 183 I D+ V ++ I LE + + + ++ G+ + D E Sbjct: 452 IFDDQGNIMLVVTNVRDITELNELEREFKKMVGLRERELDAVFESSYDGLYITDGEANTL 511 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFR---------------------PLTFESNFTHGHMQ 222 +N+ + LGV IG+ +R +T ++ + Sbjct: 512 RLNEAFERILGVKAEECIGRNMRELVAEGVYSRSGTLLALEKQDQVTITLQAKTGKTALV 571 Query: 223 HIVSWDDKSELIIGQLHNIQ-----GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECR 277 D+ II + N++ + + + F + + Q V Sbjct: 572 TSTPIRDEHGNIILVVTNVRDISELNELQEKLGHAEELSRFFQSELQEMKLRTQCVIHSS 631 Query: 278 VMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLL 337 MR+L ++ RIA S+V++ GESG GKE+VA IH S RR +P I INC AIPE LL Sbjct: 632 KMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSNSNRREQPMIKINCGAIPENLL 691 Query: 338 ESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPI 397 ESELFGY GAFTGAS GK G+ + A+ G LFLDEIGD+PL LQ KLLR ++ +EIL + Sbjct: 692 ESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGDLPLSLQVKLLRVLQDKEILRV 751 Query: 398 GASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHY 457 G + PI+VD+RII+ TN NL + + + FR+DLFYRLNVIPIT+PPLRER+EDI +L ++ Sbjct: 752 GGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNVIPITVPPLRERREDIPILANH 811 Query: 458 FLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPP 517 FL ++ G ++ ++ ++ WPGN+REL NL+E LV V + I + L Sbjct: 812 FLDNFNQKHGMN-KKLSGSILAYFMEYDWPGNVRELENLVERLV-VTSLNQTITAHDLSA 869 Query: 518 NLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGI 577 + + ++ + L D ALE E++++ A S S +VA LGI Sbjct: 870 ----WSELKPENKSDNEHGIVRLQD----ALENTERRILENAFSVCKSTYEVARALGISQ 921 Query: 578 ATLYRKIKKYEL 589 T+ RK KY + Sbjct: 922 PTVVRKAAKYGI 933 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 10/165 (6%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI-FATMIDNMDQGVLVVDDENRVQF 184 I D + + ++ I LE + + T++D+ G+ + D E Sbjct: 329 IFDEQGNIAFIITNVRDITELNELERRLKHIGLRDRELDTILDSSFDGIFITDGEANTLR 388 Query: 185 VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR 244 +NQ + GV +G+ ++ L E F+ ++ +K E L G+ Sbjct: 389 LNQAFERITGVTAQECVGRNMK--ELVDEGYFSGSGTLLVL---EKRERATITLVTRTGK 443 Query: 245 QLFLMAF----HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 ++ + + Q + V N D + +L E + M L+ Sbjct: 444 EVLVTSTPIFDDQGNIMLVVTNVRDITELNELEREFKKMVGLRER 488 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 11/140 (7%) Query: 137 VRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV 196 ++ IS + + E+ +++ + ++ G+ + D E +NQ ++ G+ Sbjct: 220 LQDISEL--EHIAEELARTRELNRQLDAIFESSFDGLYLTDGEGNTLRLNQGFVRITGIS 277 Query: 197 QNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF----H 252 +G +R L F+ + +K E L G+++ + + Sbjct: 278 MEECVGSNMR--ELVDTGVFSDSGTLLAL---EKQERTTITLVARTGKEVLVTSTPIFDE 332 Query: 253 QSHTSFSVANAPDEPHIEQL 272 Q + +F + N D + +L Sbjct: 333 QGNIAFIITNVRDITELNEL 352 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 18/142 (12%) Query: 131 REFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTAL 190 + + + I+ E + +++ V+ +D E R+ +N+ Sbjct: 106 DSYFHLIWQLCRIWHKNASE-----------WEACFNSIYNPVISIDGEGRINLLNRALE 154 Query: 191 KTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA 250 K+ G+ + GK + FT+ + +++ Q + Sbjct: 155 KSTGISASEARGKKV-------TDIFTNSKLNEVLTTGQTQATRKIQYQDKILLTNRTPL 207 Query: 251 FHQSHTSFSVANAPDEPHIEQL 272 + + +VA D +E + Sbjct: 208 YKNGRIAGAVAVLQDISELEHI 229 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 169/528 (32%), Positives = 257/528 (48%), Gaps = 54/528 (10%) Query: 89 SKENCREKAFLGT---PVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTI- 143 + CR FL P+ + VGV+++ H + + + + Sbjct: 153 WEHFCRPNHFLTCSAAPIFDPEGEIVGVLNISGDYRYANAHTLGMVVAAVNAIEKQLCLH 212 Query: 144 -FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 SKL T+++++ G++ V++ + +N + K G+ G Sbjct: 213 KVTSKLYISYKYS-------QTLLESISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKG 265 Query: 203 KPI--------------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 K I R R + E+ + DD IG + ++ Sbjct: 266 KHINTVMRQQAPILSLLATGEGYRDREILLENQGKKVFSSATLLLDDSGNT-IGAVAVLR 324 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + L + H+S + ++GE + + K A S S++++ GES Sbjct: 325 QARDALKSRRAQHSSL------PRYSFDDIIGESPAISEAKEWARIAANSGSTILLSGES 378 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE+ A++IH +S RN PFIAINCAAIPE L+ESELFGY +G FTGA G G + Sbjct: 379 GTGKELFAQSIHNVSSFRNGPFIAINCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFE 438 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 +A+ GTLFLDEIGDMPL +QAK+LR I+ ++I +G+S QV+IRII++T++NL + Sbjct: 439 SADRGTLFLDEIGDMPLTVQAKVLRVIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVL 498 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 G FREDLFYRLNV+ + +PPLR+R DI L+ + + + R+G L Sbjct: 499 NGNFREDLFYRLNVLVVQVPPLRDRGGDIPLVACHLVEKISARMGKQRIVGEDAFWGKLA 558 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 H WPGN+REL N +E V V+ + L +++ + VS Sbjct: 559 SHNWPGNVRELENAIEQAVVRSDDSGVLLARHLTFDVVESVAPTGGRAEIVS-------- 610 Query: 543 AGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 L EMEKQ I AL + + ++ A +LGIG TLYRKI++Y + Sbjct: 611 -----LTEMEKQAITAALHLYDGNIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 248/504 (49%), Gaps = 40/504 (7%) Query: 100 GTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 P+ R +G ++L T +H + + +E+ + Sbjct: 168 AAPIHDSTGRFLGALNLAISTENFHQHTLGLVEA------------AAHAIEEHLRLRAL 215 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH 218 +++ +D GV V+ + + +N A LG+ +++G+ IR ES Sbjct: 216 IASQRVILELLDDGVAVLGADGTIVSLNGQACSMLGLSP-DVVGRDIRSF--VRESEVLR 272 Query: 219 GHMQHIVSWDDKS---ELIIGQLHNIQGRQLF---------LMAFHQSHTSFSVANAPDE 266 + ++ D+ L+ G+L F + VA A Sbjct: 273 AILADRQTFHDREVTFRLVQGELSCALSCAPFADGGVILTLRETRRMRKYAARVAGAKAV 332 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 E ++G+ + +R+ RL A ++ +++GESGTGKE+ A+A+H RR PF+ Sbjct: 333 YTFEHILGQSKALREAVRLARVAAQGDATTLLLGESGTGKELFAQAVHNAGARRKGPFVV 392 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NC A+P L++SELFGYV GAF+GA G G + A+ GTLFLDEIG+MPL Q LL Sbjct: 393 VNCGALPRNLVQSELFGYVAGAFSGALKEGSPGKFELADGGTLFLDEIGEMPLEAQVSLL 452 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ E+ +G +VD+RII+ATN++LA + FR DL+YRLNV+ I +PPLR+ Sbjct: 453 RLLQENEVTRLGGKEARRVDVRIIAATNKDLALAVRNNAFRGDLYYRLNVLSIAIPPLRQ 512 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+ D+ LL FL T LG I+ + + L H WPGN+REL N +E LVNV S Sbjct: 513 REGDVPLLTRLFLDKFTASLGKPELEISREALAALAAHHWPGNVRELENCIERLVNVACS 572 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 ID LP +++ T++ + G +L+ +++ +I E L Sbjct: 573 SR-IDIADLPQDVM----------TDMLRGRPAAPGEAGMSLKRIQRALILETLRETGGN 621 Query: 567 -KQVADELGIGIATLYRKIKKYEL 589 ++ ++ L I TLY K+K+Y + Sbjct: 622 FRRASNLLNISRTTLYAKLKQYGI 645 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 154/441 (34%), Positives = 229/441 (51%), Gaps = 36/441 (8%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 ++ + N+ QGV +D RV ++L + + ++G+ PL +E Sbjct: 318 QTAQSIDAALQNL-QGVETID--GRVF-------ESLPLPEGFVLGEKQVVVPLYYEDIL 367 Query: 217 THGHMQHIVSW----DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 + S D ELI L + G + HQ + E + Sbjct: 368 CGAMLASCSSKCKCDSDSMELISLVLSHASGT-IRRAILHQEEIKKLKQGVSESAGFEGM 426 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +G M+ + RLI +AP+ +V++ GESGTGKE+VA+AIH S RR+ PF+ INC+A Sbjct: 427 IGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFVVINCSAY 486 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P LLESELFG+ KGAFTGA + G + A GT+FLDEI ++ L Q KLLR ++ + Sbjct: 487 PATLLESELFGHEKGAFTGAIRQ-RPGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQ 545 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 + +G I+VD+RI++ATN++L + + G+FREDL+YRL+V+PI LPPLRER D Sbjct: 546 KFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRERGNDTA 605 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 LL +FL I+ + L + WPGN+REL N+ME V V+ GE I Sbjct: 606 LLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNVRELENVMEQAV-VLCKGETIAL 664 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VAD 571 LP L + +E+ EK ++ E L K+ A+ Sbjct: 665 EDLPDKLQGARPARR------------------KTIEDQEKNLLLETLEACGWNKKMAAE 706 Query: 572 ELGIGIATLYRKIKKYELLNT 592 LGIG +TLY K+KK+ ++++ Sbjct: 707 RLGIGRSTLYAKLKKHGIMDS 727 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 159/462 (34%), Positives = 257/462 (55%), Gaps = 34/462 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG-VVQNNIIGKP----------- 204 + K +I++ G+++ D E R+ NQ+ + G + +++GK Sbjct: 17 RLKKELDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVADLLGKTALELEKEGIIL 76 Query: 205 ------IRFRPLTFESNFTHGHMQHIVS---WDDKSELI--------IGQLHNIQGRQLF 247 + PLT + N G I S +DD+ + + +L ++ Sbjct: 77 SQSKIILGKDPLTLKQNIRTGVELFITSKPAYDDRGRFLFYVATIRDMTELSRLRQEVEE 136 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 + + +++V R M+ + R+A + ++V++ G SG+GKE Sbjct: 137 TKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICERAIRVAQTDTNVLISGPSGSGKE 196 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 ++A+ IH S R++ PF+ INC AIPE LLESELFGY KGAFTGA GK GL++ A+ G Sbjct: 197 MIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYEKGAFTGAGRQGKIGLMEMADLG 256 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+ LDEIGD+ ++Q KLLRAI+ + I +G+++PI++++RII+ATN+NL + + E FR Sbjct: 257 TILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKLNVRIIAATNKNLEKMVEENLFR 316 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNVIPI +PPLRER+E I L +FL ++ G+ ++P+V ++ WP Sbjct: 317 EDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQKHGTD-KSLSPEVCACFEEYDWP 375 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL NL+E +V + +V+ LP N+ ++G +SD++ E + + + A Sbjct: 376 GNVRELENLIERMVVISDE-KVLTPYWLPRNV-SSGQAPRSDMSPKQE--CTAEISLKQA 431 Query: 548 LEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 E E+ I ALS H S ++ A LG+ +T+ RK+K L Sbjct: 432 RESAERDAICRALSLHGSIRKAAKSLGVDHSTVVRKMKSLGL 473 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 165/508 (32%), Positives = 257/508 (50%), Gaps = 73/508 (14%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 TP+ +G I + + IS + + K Sbjct: 90 TPLYRNGELIGAIGV---------------------LEDISQM---------EHYHTLLK 119 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----------RFRP 209 T+I+ G+ VVD VN G + ++GK + Sbjct: 120 QMETIIEFSTDGIYVVDQNGITTMVNSAYEAITGFRREELVGKHMYDLVKKGYFDQSVSL 179 Query: 210 LTFESNFTHGHMQHIVSWDD-------------KSELIIGQLHNIQGRQLFLMAFHQSHT 256 L + +Q I D E+++ + +I ++ + Sbjct: 180 LVLQQKKRISILQKIGGKKDVIVTGNPVFNEQGDIEMVVTSVRDISHLIQMKAELEKAKS 239 Query: 257 SFSVANAPDEPHI----EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 ++ + EQ+V M+QL + +IAP P++V++ G SG GKEV+A Sbjct: 240 FSEMSQHRYTFSVDGSKEQIVFRSPSMKQLFDKVEQIAPYPTTVLLTGPSGVGKEVIANL 299 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH LS R+NKPFI +NC AIPE LLESELFGY KGAFTGA +GK GL++ A+ GT+ LD Sbjct: 300 IHHLSPRKNKPFIKVNCGAIPEPLLESELFGYEKGAFTGARQDGKIGLLELADKGTIMLD 359 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIG+MPL LQ KLLR ++ +++ IG+ ++D+RII+ATNQNL + I++GKFREDL+Y Sbjct: 360 EIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLKELISQGKFREDLYY 419 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RL VI + +PPL ER EDIE L+ ++ + + + ++P EIL+++ WPGN+RE Sbjct: 420 RLQVIEMYIPPLAERPEDIEPLIDHYFSFYCKLY-RINKHLSPKTKEILQRYHWPGNVRE 478 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L NLME +V VPS ++I+ LP ++ + + + +E+ E Sbjct: 479 LKNLMENMVVSVPS-QLIEPHDLPLHIYD-------------QTAATSPLTLKERVEQFE 524 Query: 553 KQMIREALSRHNSKKQVADELGIGIATL 580 +++I EA+ ++ S ++ A +LGI +TL Sbjct: 525 RRLIYEAIEKNTSLRKAAQQLGIDHSTL 552 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 10/90 (11%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGH 220 I+ + ++ GV+VVD ++ +N +A K L + N GK IR T + Sbjct: 10 IWENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQ------- 62 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMA 250 + + IG NI GRQ + Sbjct: 63 ---LPHVLENGTSSIGVKMNIAGRQCLVNR 89 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 147/463 (31%), Positives = 238/463 (51%), Gaps = 35/463 (7%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN------I 200 K + N A + +++ G+L VD V NQ A + G +++ Sbjct: 125 KYKQAIDREANTRTNLAAIFESVKDGLLSVDASGCVTDFNQAASRLCGWSKDDRGEKIDA 184 Query: 201 IGKPI---------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 + P R +H+ L L N +G + Sbjct: 185 LSMPCAGTCRDLLTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPLQNKEGDVFGAVMV 244 Query: 252 HQSHTSFS--VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + T + +++ M+Q+ LI +A PS+V+++GESGTGKE+V Sbjct: 245 VRDETRLDDLERSLNKRQSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELV 304 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A A+H R+N+P + +NCAA+ + LLESELFG+VKG+FTGA + G Q A+ GT+ Sbjct: 305 AEALHLSGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKD-HVGRFQKADGGTI 363 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGD+ +Q +LLR ++ +E+ IG S+P++VD+RI++ATNQ+L + + G+FR+D Sbjct: 364 FLDEIGDISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQD 423 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRL VI + LPPLRER+EDI +V +F+ + LG G+ +V+ ++ + WPGN Sbjct: 424 LYYRLKVITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWPGN 483 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +R+L + +E+ + + + + +P +L + E Sbjct: 484 VRQLEHAIEH-ILIHCTEPLASLAHVPEEILQGEQAVGKYCADS---------------E 527 Query: 550 EMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 E E+Q I AL + + +K + A LGI TLYRKI+K+ L+ Sbjct: 528 EQEQQQILAALDKTDWNKAKAARLLGIDRKTLYRKIEKFGLVE 570 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 148/451 (32%), Positives = 248/451 (54%), Gaps = 27/451 (5%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH 218 + ++D+++ G+ V+ + F N+ A K G + N++GK E Sbjct: 130 EQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKAC-GTLFAGEGKQVC 188 Query: 219 GHMQHIVSWDDKSELIIGQLHNIQGRQLFL-----------------MAFHQSHTSFSVA 261 ++ +++ + + G+L + QG + + +A Q T Sbjct: 189 QALKQVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAFQDMTLVQQL 248 Query: 262 NA--PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 N + H ++G+ M+++ ++ +A + S++++ G +GTGK+++A+ IH S R Sbjct: 249 NQAIKGQYHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHSESNR 308 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 +PF+ +NCAAIP+ L+ESE+FGYV+GAFTGA + K G A++GT+FLDEIGD+PL Sbjct: 309 SKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRD-KPGRFSEAHSGTIFLDEIGDLPL 367 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQAKLLR +E RE P+G+ +VD+RI+SATN+ L +A+ FREDLFYRLNV+ I Sbjct: 368 ALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNVLRI 427 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 LPPL R+ D+ LL+ + + + +P I +EIL + +PGN+REL N++E+ Sbjct: 428 DLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNIRELENIIEH 487 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 + + EVI S LP +L+ E + + +G E+Q I + Sbjct: 488 AIILCQE-EVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQ----ERQQILDV 542 Query: 560 LSRHNSKKQ-VADELGIGIATLYRKIKKYEL 589 L + +Q A+ LG+ TL+RK++K+++ Sbjct: 543 LRANRWHRQTTANLLGMDRTTLWRKMRKFKI 573 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 16/141 (11%) Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------- 206 G N+ + ++D+ + GV++VD+ R++ N +A L + ++ IIG + Sbjct: 2 GHNLYDQWLKILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPC 61 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSE------LIIGQLHNIQGRQLFLMAFHQSHTSFS- 259 F F T V + D++ + L + QGR + Q H+ F+ Sbjct: 62 FPTCPFHDPETSDVRDMDVEFLDEAGEKHRVTRVGAPLLDDQGRVQGCVTVLQDHSPFNE 121 Query: 260 -VANAPDEPHIEQLVGECRVM 279 V E +++ + M Sbjct: 122 LVNRIHYEEQSLKIILDSLNM 142 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 236/461 (51%), Gaps = 44/461 (9%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL------- 210 + + ++D M +G+L+VD + ++ VN+ + G ++ +IG Sbjct: 23 LETHWHEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCSLFKCDACRRVR 82 Query: 211 --------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ-------------LFLM 249 + + + D + + I + +I + L + Sbjct: 83 SEARQAWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTVGAVETMTDLSEL 142 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 ++ +E +VG MR++ LI + A S + V + GESGTGKE+V Sbjct: 143 DRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELV 202 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 ARAIH L R ++P++ NCAA+ E LLESELFG+VKGAFTGA + + G +AA+ G + Sbjct: 203 ARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRH-RQGRFEAAHGGDI 261 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGD+P+ +Q KLLR +E + +G + + VD+RII+ATN+ L + I++G+FRED Sbjct: 262 FLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFRED 321 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 LFYR+NVIP+ LP LRER+EDI LL YF+ + G++P + + + WPGN Sbjct: 322 LFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGN 381 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL + +EY + G I+ LP N++ G Sbjct: 382 VRELKSSLEYAFVLADHGH-IEPEHLPHNVVVTAPPVAEP-------------RYGNPGH 427 Query: 550 EMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 + ++Q + +AL + +K + A LGI T+ +++K+ + Sbjct: 428 DSQRQQLVQALHQAGGNKSEAARILGINRVTVLNRMRKHGI 468 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 158/463 (34%), Positives = 241/463 (52%), Gaps = 36/463 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------- 206 N ++ + + +V+++ V + N A++T + + I+ K I Sbjct: 3 NELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLMV 62 Query: 207 FRPLTFESNFT----------HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 + L ++ T H + +D++ LI Q+ + + T Sbjct: 63 LKVLRTKARITDQYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVST 122 Query: 257 SFSVANAP-------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 S + +E +L G+ R +R ++ ++ A + + +++GESGTGKE+ Sbjct: 123 SIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEIC 182 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 ARAIH+ S R+N PFI +NC +IP L ESELFGY G FTGA GK G I+ A+ GTL Sbjct: 183 ARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTL 242 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG++PL +Q KLLR ++ + I IG +S ++++R I+ATNQ++ + + E FR D Sbjct: 243 FLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSD 302 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNVI IT+PPLR R +DI +L YFL + P +APD + L+ + WPGN Sbjct: 303 LYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPGN 362 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL NLME +V ++ ID L N T S E Sbjct: 363 VRELRNLMERMV-ILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEK-------E 414 Query: 550 EMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 MEKQ+I +AL + +K A ELGI TLY+K+KK+ + + Sbjct: 415 NMEKQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGIGS 457 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 155/459 (33%), Positives = 239/459 (52%), Gaps = 31/459 (6%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESN 215 ++ I+ ++++M +G++ D ++R+ F+NQTA + G+ N IG+ I + Sbjct: 2 QQLTTIYRDILESMAEGIIFADADDRLTFINQTAEEIRGIKAENFIGRTIFSVHSPNSAK 61 Query: 216 FTHGHMQHIVSWDDKSELII--------------------GQLHNIQGRQLFLMAFHQSH 255 +Q + K + G L + + H Sbjct: 62 RIKELLQKLRDGSIKQARRVIEVKGRYFENSYYPVSSPDGGYLGTLLISRDVTERQQLQH 121 Query: 256 TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 + S+ V M + + I +A S+V++ GESGTGKE+VA AIH+ Sbjct: 122 ENQSLKQRMACGSFGGFVSISSSMLPVFQTIGAVAGLESTVLITGESGTGKELVAAAIHR 181 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 S R + + +NCAA+PE L+ESELFGY +GAFTGA N + G + A+ T+FLDE+G Sbjct: 182 NSARNERAMVTVNCAALPEHLVESELFGYQRGAFTGAVGNHR-GKFEQADKSTIFLDEVG 240 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 D+P QAKLLR ++ R + +G+ I+VD+RII+ATN+NL Q +A+G FREDL+YRLN Sbjct: 241 DLPANAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRLN 300 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 VI + +PPLRER+EDI + +FL + R+ GI +L + +PGN+REL + Sbjct: 301 VISLPVPPLRERREDILPMAEFFLKRFSERMERPQLGICEATRSVLLSYDYPGNVRELEH 360 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLL----NNGTTEQSDVTEVSEAHLSLDDAGGTAL--- 548 +E V + P G I LP + + G Q ++ + DDA L Sbjct: 361 GIERAVALCP-GSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLANA 419 Query: 549 -EEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIK 585 EE E+++I +AL R +K + A L I TL+ K+K Sbjct: 420 REESERRLILDALVRTGGRKAEAAKLLNISRKTLWEKLK 458 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 208/345 (60%), Gaps = 10/345 (2%) Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 F+ +S+ + QLVG M+++ RLI ++A + ++V++ GESGTGK Sbjct: 404 FIAQLEKSNFHLRQELKAFQGKFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGK 463 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+VARAIH S R PF++INCAA+PE LLESELFG+ +GAFTGA K GL + AN Sbjct: 464 ELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAFTGAV-TAKKGLFEEANE 522 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIGD+ L LQ+KLLR ++ E L +G + P +V++R+++ATN++L + + +G F Sbjct: 523 GTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAF 582 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R +L YRLNVI I LPPLRER++DI LL +FL +RLG G + ++ L + W Sbjct: 583 RPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALIRADW 642 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E V ++ + I+ LP N S + + Sbjct: 643 PGNVRELENVIERAV-ILTESKRIELGDLPRQFRNMA-------AGASGWAFTRGMSFKE 694 Query: 547 ALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYELL 590 A+ E ++I +AL + + A+ LG+ +TL IK+Y L+ Sbjct: 695 AVAAYESRLILQALEESQGVQARAAEILGLKRSTLNEMIKRYNLM 739 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 164/434 (37%), Positives = 242/434 (55%), Gaps = 22/434 (5%) Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNI--IGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 +V D F+N+T + + + I IG P+ +S+++ Sbjct: 99 VVPDVHREPLFLNRTRAR-TNLPKGEISFIGVPVMLAENPVGVLSVDRLFGPEISFEEDI 157 Query: 232 ELI------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 + IGQ N+Q + S D + ++G+C+ ++++ Sbjct: 158 RFLTVVATMIGQFLNLQRTFASSQQVLREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDY 217 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 I+++APS ++ +++GESGTGKE+VARAIH+ R +PFI +NCAA+PE LLESEL G+ Sbjct: 218 IAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCAALPENLLESELLGHE 277 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA K G + A+ GTLFLDEIG++PL LQAKLLR ++ R +G S I V Sbjct: 278 KGAFTGAV-GQKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAV 336 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+RII+ATN++L + EG FR DL+YRLNV+P+ LPPLRER+EDI LL+ +FL R Sbjct: 337 DVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRH 396 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN--- 522 A V+ L ++ WPGN+REL NL+E LV +V GEV++ LP L + Sbjct: 397 NRRRVK-FAAAVIRRLNEYSWPGNVRELQNLVERLVIMV-DGEVVNLDDLPAYLADPDPA 454 Query: 523 ------GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGI 575 G +Q + + + A G +L EMEK+ + AL RH + + A +LGI Sbjct: 455 NRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRRHGWVQTRAARDLGI 514 Query: 576 GIATLYRKIKKYEL 589 + +I+KY + Sbjct: 515 TPRQMGYRIRKYAI 528 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 164/457 (35%), Positives = 243/457 (53%), Gaps = 40/457 (8%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFES 214 I ++ D +G LVVD +R+ + + + LGV + IGKP+ Sbjct: 8 EIYELLEKAFDEF-KGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIPHSRMSE 66 Query: 215 NFTHGHMQHIVSWDDKSELII------------------------GQLHNIQGRQLFLMA 250 G + W+ K E I ++ + GR +L A Sbjct: 67 VLKSGEPEIAQVWEVKGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDA 126 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + S +E ++G + ++K ++ IA + S++++ GE+GTGKE+ A Sbjct: 127 ELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFA 186 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 A+H S RR I +NCAAIP++LLESELFGY +GAFTGA GK G + AN GTLF Sbjct: 187 HALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLF 246 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG+MP LQAKLLR ++ EI IG + P+QVD+RI++ATN+NLA+ + +FREDL Sbjct: 247 LDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDL 306 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRLNVI + +PPLRER EDI LV +F+ RLG GI P+V E+ + + WPGN+ Sbjct: 307 YYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHWPGNV 366 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++E +NV+ +VI + L ++ + S L Sbjct: 367 RELYNVLERTMNVIQR-DVIGLADINWFLPRVLSSSGRQTSRSS-----------NTLRN 414 Query: 551 MEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586 +E ++I L +K + A+ LGI +T+Y K+K+ Sbjct: 415 LEAKIIHRVLESCNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 156/506 (30%), Positives = 240/506 (47%), Gaps = 47/506 (9%) Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQT 188 + + + I + +++ D P + + F ++DN+ GVL +D E RV +N+ Sbjct: 98 DRAALFETLGRIPDLLEFRIV-DTLPAEERANRFLVLLDNLRDGVLSIDAEGRVTSINKV 156 Query: 189 ALKTLGVVQN-----------------------NIIGKP-------IRFRPLTFESNFTH 218 A + G + +G P + R L Sbjct: 157 AREAYGCTGAPGVSGTSGTPGGTPAADLSGLPLDALGLPDRGILDCLSGRELVDAKREVA 216 Query: 219 GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 + + I I G + P + +VG+ Sbjct: 217 TPGGGRLQFFVTRRPIRDGEGRIIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPA 276 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 + R+A + S + + GESGTGKE+ ARAIH SGR PF+ +NCAA+PEQLLE Sbjct: 277 IGFAISFARRVAATDSIIAIRGESGTGKELFARAIHTASGR-QGPFVPVNCAALPEQLLE 335 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY GAFTG +GK GL + A GT+ LDEIGDMPL QAK+LR ++ + +G Sbjct: 336 SELFGYEAGAFTGGRRDGKPGLFETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVG 395 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++ + VD+RII+ATN+ L + + EG+FR+DL+YR+NV+PI +PPL+ER DI +L +F Sbjct: 396 GTAEVPVDVRIITATNRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHF 455 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L RLG ++P + L H WPGN+REL N++E + P V +L + Sbjct: 456 LLGLAARLGGPVRSLSPGALARLAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFAH 515 Query: 519 LLNNGTTEQSD---------------VTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 L G +S + E H + + EK++I +A++ Sbjct: 516 ELEGGLFGESARLADGVADTVADAAALASGHEHHGDGEGRLKDMIAVFEKRIIVDAVAAA 575 Query: 564 NSKKQVADELGIGIATLYRKIKKYEL 589 S ++ A +LGI L K++++ L Sbjct: 576 GSVRKAARKLGISHTALLDKLRRHGL 601 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 153/503 (30%), Positives = 261/503 (51%), Gaps = 35/503 (6%) Query: 100 GTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 P+ + +GV++L H + S+ + + ++ E + Sbjct: 159 AAPIKDSHGKLIGVLNLTGYIECVHSHTLGMVIAASNAIEEML-----RVKEYNKIQNIN 213 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ---------NNIIGKPIRFRP 209 +K + +++ ++ D +++ N AL G N ++ R Sbjct: 214 NKHIKNLFNSIPVAIITSDMNGKIKVCNNKALDMFGSNSINKLKAYEMNELVENWDEIRN 273 Query: 210 -LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM-AFHQSHTSFSVANAPDEP 267 + +F+ + + + L++ ++N + + ++ F + + Sbjct: 274 AIYLGESFSREVNIRTLRNNFRCNLMVSSIYNCEEDDIEVVYVFEEVKKIKRKNHGQAYY 333 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 ++++G+ ++ +I+ S S+++++GESGTGKEV A++IH S R + PFIA+ Sbjct: 334 TFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFIAL 393 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NC AIP+QL+ESELFGY +GAFTGA G G + A+ GT+ LDEIG+MPL +Q KLLR Sbjct: 394 NCGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLR 453 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ I IG+S I VD+RII+ATN++L + + G+FR+DL+YRLNV+P+ LPPLRER Sbjct: 454 VVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRER 513 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 + DI L++ Y + ++RL P I+ + ++ + + WPGN+REL N++E Sbjct: 514 KGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELENVVE--------- 564 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK- 566 +I++ +P NG + +SE L LD A EK+ + + L + Sbjct: 565 LIINTESIPSGYFQNGNCYNEVLINISEDSLKLDFA--------EKEHLVKVLKKFKGNI 616 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A+ LGI TLY KIKKY + Sbjct: 617 TRSAEALGIRRNTLYSKIKKYNI 639 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 151/462 (32%), Positives = 242/462 (52%), Gaps = 40/462 (8%) Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------- 206 D+ ++ M++ G+++VD E + ++ LGV Q IGK + Sbjct: 110 NDHQVELLEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVTEVIENTRM 169 Query: 207 -----------FRPLTFESNFTHGHMQHIVSWDDKSELI-------IGQLHNIQGRQLFL 248 ++ I+ + + +G +++ R + Sbjct: 170 HIVAKSGKTEVAELQKIRGDYMIATRVPIIKNGQVTGAVGKVLFKNVGGFNSLYKRVNSM 229 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + ++G ++ Q K+ + A S S+V+++GESGTGKE+ Sbjct: 230 EKELKRYKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSDSNVLLLGESGTGKEL 289 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A +IH S R F+ +NCAAIP LLESELFGY +G+FTGA GK G +AA+ GT Sbjct: 290 FAHSIHNESRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTGAIKGGKKGKFEAADGGT 349 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 +FLDEIG++PL +Q K LR ++ +E+ IG+S+ VD+R+I+ATN++L + + G+FR Sbjct: 350 IFLDEIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIAATNRDLEKMVQAGEFRL 409 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV+PIT+P LR+R+ DI L YFL + R+ V I P+ + L ++ WPG Sbjct: 410 DLYYRLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNMVARDIHPEAILALEQYEWPG 469 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N++E VNV + ++I LP + G +S V + + + Sbjct: 470 NIRELENVIERAVNVAENEKMIRRCHLPEKI--TGVQFRSGVRPLEQ-----------VM 516 Query: 549 EEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 EE EK+ I AL +N++ + A+ L I +LY K+KK+ L Sbjct: 517 EETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKKHRL 558 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 150/472 (31%), Positives = 245/472 (51%), Gaps = 39/472 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 + P + +++N +G+++VD + ++ ++ +G+ Sbjct: 1 MSQSRKKSAAPRKIPQDLLDALLNNPYEGLILVDAQGIIRHMSSANEGIYPFTPQESVGR 60 Query: 204 PIRFRPLTFE------------------SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 I + T + +S D K G+L + + Sbjct: 61 HIHDVSPKSRMDRTIRTGKAEIGRSMILDDKTRVVARFPLSKDGKVIGAAGKLLFMDPGK 120 Query: 246 LFLMAFHQSHTSFSVANAPDE--------PHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 + + +H + DE ++ ++G+ + Q KRL + A + S V+ Sbjct: 121 MKELYERITHLERRLEKYEDELAQIYRTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVL 180 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 ++GESGTGKE+ A AIH LS R + + +NCAAIP +LLE+ELFGY +GAFTGA GK Sbjct: 181 IMGESGTGKELFAHAIHGLSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGK 240 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A+ GT+FLDEIGDMPL +Q K+LR ++ RE+ +G++ P +VD R+I ATN++L Sbjct: 241 AGKFELAHGGTIFLDEIGDMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDL 300 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + +G FR+DL+YR+NV+ + LPPLR+ ++DI L +F + R P I P V Sbjct: 301 PKLMRQGLFRQDLYYRINVMTLKLPPLRDCRDDIFPLFQHFSRILGRE--KTPPKILPGV 358 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 EIL K+ WPGN+REL N+ E + V + LP ++Q + +V E Sbjct: 359 KEILEKYSWPGNVRELRNVTERALIVC-RDNTVSPADLPD------LSQQEVLPQVIEEK 411 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 SL +++ EK++I +AL + +S+ + A LGI LY+K+KK+ + Sbjct: 412 ASLKAL----MDQAEKKIIEQALVQASSRAEAARNLGIHRTGLYQKMKKHGI 459 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 154/449 (34%), Positives = 231/449 (51%), Gaps = 22/449 (4%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG-------------VVQNNIIG 202 + ++ T++D G +V+D + ++ N A++ L + +II Sbjct: 81 EEREQLIETILDASSDGFIVIDKDGTIKLTNSRAIQILRQAGNLEGKSIYTILPAPDIIK 140 Query: 203 KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 K + + H S + + IQG L L H Sbjct: 141 KALSKGIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLILTLRDMHDVREMVYSIT 200 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + +V + M + L IA + S+V++ GESGTGKE+ ARAIH R NK Sbjct: 201 QARQITFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGKELFARAIHAAGKRHNK 260 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PFI +NCAAIP+ L+ESELFGY G FTG GK GL + A+ GTLFLDE+ ++ +Q Sbjct: 261 PFIPLNCAAIPDTLIESELFGYEDGTFTGGKKGGKQGLFELAHGGTLFLDEVAELSAYVQ 320 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ + +G I VD+RII+ATN+NL + G+FREDLFYRLNVIP+ +P Sbjct: 321 AKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQFREDLFYRLNVIPLYIP 380 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRE EDI LL+ +F+ + +LG ++P VE + ++ WPGN+RELSN++E + Sbjct: 381 PLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPWPGNVRELSNVVERAIY 440 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + G VI + Q+ V + + A A+E E+++I EA+ R Sbjct: 441 LC-DGRVITEDHI--------VFAQAAVDQPAAAVNDAIPLLREAVEATERKLIAEAIRR 491 Query: 563 HNSKKQVADELGIGIATLYRKIKKYELLN 591 + S +Q A LG+ L ++KK + Sbjct: 492 YGSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 155/468 (33%), Positives = 240/468 (51%), Gaps = 53/468 (11%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG-KPIRFRPLTFESNFT 217 + F + + + D E+R N+TAL+ LG+ +G + P T ++ Sbjct: 182 EERFRDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRL 241 Query: 218 HGHMQHIVSWDDKSELIIGQLHN--------------------------IQGRQLFLMAF 251 + + ++ +L I + LM Sbjct: 242 VKEAFASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPDRGGQFTRTVFIDVTERVLMER 301 Query: 252 HQSHTSFSVANAPDEP----HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 Q+ +E + +++VG+ + + + +S++A + S+V++ GE+GTGKE Sbjct: 302 EQARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKE 361 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VARA+H S R+ KP I +NCAA+P L+ESELFG+ KGAFTGA A K G + A+ G Sbjct: 362 LVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVAR-KPGRFELADGG 420 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 TLFLDE+G++ L QAKLLR ++ RE +G ++P++VD+R+I+ATN++LAQ + EG FR Sbjct: 421 TLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFR 480 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 DL YRLNV P+ LP LRER DI LLV +F+ RLG ++ D ++ L + WP Sbjct: 481 ADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWP 540 Query: 488 GNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 GN+REL N++E + E VID +LP V+ + AGG Sbjct: 541 GNIRELENVIERAAILSDGPELVIDPDVLP----------------VTRGGAAPAGAGGQ 584 Query: 547 ALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 +L +E IR L++ + A LG+ TL ++KK +L Sbjct: 585 SLVAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGIL 632 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 251/472 (53%), Gaps = 38/472 (8%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP 209 + K ++ + V+D + + +N+ GV N++GK + Sbjct: 90 NELNELKEQVKELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENLLGKNVADLE 149 Query: 210 LTFESNFTHGHMQHIVS----------------------WDDKSELI--------IGQLH 239 N + M +D+ E+I I +L Sbjct: 150 REGYYNPSVSRMVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVVNSRDISELL 209 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 N++ + +S+ + + + ++L+ M+++ ++ ++A S+V+++ Sbjct: 210 NLRKQLEDTEQLVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVAQVDSTVLIM 269 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESG GK V+A +H+LS R PFI INC AIPE LLESELFGY GAFTGA GK G Sbjct: 270 GESGVGKGVIASRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFTGARKEGKKG 329 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 L++ AN GT+FLDEI ++PL LQ KLL+ I+ ++++ +G S I VDIR ++ATN+++ + Sbjct: 330 LLELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQR 389 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 +AEG FREDL+YRLNVIP+ +PPLR RQEDI +L+ YFL + P+ +E Sbjct: 390 MVAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKN-KKFTPEAIE 448 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ILR + WPGN+REL NL+E L+ V G I + LP + + + + + L Sbjct: 449 ILRNYNWPGNVRELENLVERLL-VTKEGNEITVSHLPEYIFEGKSRFPNRIYVLDICPL- 506 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 A+EEMEKQ+ A +R + +VAD L I +T+ RKI+KY LL+ Sbjct: 507 -----KEAVEEMEKQLFSMAYNRLKNTYKVADALAINQSTVVRKIQKYNLLS 553 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 142/349 (40%), Positives = 211/349 (60%), Gaps = 6/349 (1%) Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 R L + + + + P E ++G+ MR+L +I+ +AP+ ++V+V GES Sbjct: 115 ERALDHLRLARENENLRQKLGPGVVGPE-IIGKSPAMRELFSMIAMVAPTEATVLVTGES 173 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE+VA+A+H S R P +A+NCAA+ E LLESELFG+ KGAFTGA + G Sbjct: 174 GTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERR-REGRFM 232 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 AA+ G++FLDEIG++ +QAKLLR I+ REI +G P+ VD+RI++ATN++L + + Sbjct: 233 AADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVE 292 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 G+FREDL+YRLNV+ I++PPLRER +DI LL +FL + G P ++ L Sbjct: 293 AGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLL 352 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+REL N +E V ++ GE + LP + + + A D Sbjct: 353 RCPWPGNVRELENAVERAV-ILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDM 411 Query: 543 AG--GTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYE 588 AG G AL+++E+++I L +K + A LGI ATL++K+KKY Sbjct: 412 AGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 217/353 (61%), Gaps = 11/353 (3%) Query: 238 LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 I ++ H+ + N D+ ++++G+ M++L LI ++A ++M Sbjct: 252 FERIPSERIIKSVTHEFKNFNKLNN--DKIGFKEMIGQSNSMKELYELIEKVADKNVNIM 309 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 V GESGTGKE+V RA+H RR+ PF+ +NCAA+P+ +LESELFG+ KGAFTGA + Sbjct: 310 VTGESGTGKELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKK-R 368 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A+ GTLFLDEIGDM L +QAK LR I+ +E +G + I+VD+RII ATN++L Sbjct: 369 VGRFELAHKGTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDL 428 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + EG+FREDL+YRLN I + +PPLRER+EDI L+H+FL ++ + P I+P+V Sbjct: 429 KKEVKEGRFREDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEV 488 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + L ++ WPGN+REL N ME + + ++I LP +++ N H Sbjct: 489 FDALMEYDWPGNVRELENAMERAIILCGK-DLIRLNNLPISIVKNNKEFD------ESKH 541 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 ++ D + ME+++I EAL + + ++ + + LGI TLY K+K++ + Sbjct: 542 VTPIDIKEITIRNMEREIIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 243/472 (51%), Gaps = 29/472 (6%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 K+ ++ ++ + +++ + G+ V++ + + +VN+ L+ L + +I+ K IR Sbjct: 215 KVKDELKTVKDLKERLQLILETVQDGICVINSDGYITYVNKAYLRILNEKEEDILNKNIR 274 Query: 207 FRPLTFESNFTHGHMQHIV---SWDDKSELII----------------------GQLHNI 241 + I+ S+ + +I+ ++ + Sbjct: 275 DVSPEGARIKVLKTGESIIGAISYKENGVIIVSNVNPIVIDGEITGVVSIVKNVTEVQKL 334 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + + A + + + +G + + A + ++V++ GE Sbjct: 335 SEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGHSGKILDALATTLKAAKTDTTVLIRGE 394 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE++A IH S PFI +NCAAIP+ LLESELFGY KGAFTGA K G Sbjct: 395 SGTGKELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESELFGYEKGAFTGAIKR-KLGKF 453 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + A GT+ LDEIG+M +QAK+LR I+ +E IG I++++RII+AT++NL + + Sbjct: 454 ELAQNGTILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEETIKINVRIIAATHRNLEEMV 513 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 +FREDL+YRLNVIPI LPPLRER++DI L+ +F+ +R+ + D +E L Sbjct: 514 KSMEFREDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDKIGKRINKRITVVTNDAMESL 573 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL- 540 +++WPGN+REL NL+E ++ + EVI+ + LP + + T ++ + + + + Sbjct: 574 LEYKWPGNIRELENLVERIMAL-NETEVIELSDLPAYMRKDINTVKNAIKSKNNNEIDML 632 Query: 541 -DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 + L+E EK +I +AL ++ S LG+ T+ K ++Y + Sbjct: 633 IETDEILPLKEYEKIIIEKALKKYGSYNAAGKALGLTHKTVAAKARQYGIEK 684 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 78/188 (41%), Gaps = 21/188 (11%) Query: 113 ISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKL-LEDQGPGDNISKI-------FAT 164 + L+ V ++ + + + + + + S LED+ + + I Sbjct: 56 LVLLKVKQNEKIIVEVHGEDPKNALDELCDFLQSDFDLEDKSTINQVDNIINNNTITLEH 115 Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHI 224 + N+ G++ D+++ + N+ A + LG+ + IGK + + + F + H Sbjct: 116 VFSNIPNGIIATDEKDIISIFNEEAERLLGISSGDAIGKKV-YEIIEFTN-------LHE 167 Query: 225 VSWDDKSELIIGQLHNIQGRQLFLMA---FHQSHTSFSVANAPDEPHIEQLVGECRVMRQ 281 ++ KSEL++ ++ I R L + ++A D +E++ E + ++ Sbjct: 168 INRTGKSELMVKEI--INNRILLINRTPIIIDKKPKGALAVFNDISKLEKVKDELKTVKD 225 Query: 282 LKRLISRI 289 LK + I Sbjct: 226 LKERLQLI 233 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 170/526 (32%), Positives = 267/526 (50%), Gaps = 52/526 (9%) Query: 96 KAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPG 155 + + P+++ +G I+ + + + + + + LLE G Sbjct: 149 YSSVCAPIVVNKELIGAINATSPFGALPQEALEVIIAAGKLIESL-------LLERDG-- 199 Query: 156 DNISKIF---ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-IIGKPIRFRPLT 211 N+++ F +ID ++ +D+ENR+ N+ A + LG Q + +PI + Sbjct: 200 QNLAENFQPWRELIDCSSWALIFLDEENRIAAANKVACQELGCGQEEQWLNRPIEEVLID 259 Query: 212 F---------ESNFTHGHMQHIVSWDDKSELIIGQLHNIQ--------GRQLFLMAFHQS 254 +S + D I + I+ GR ++ Sbjct: 260 KRDSAYLTRDDSGQPKPPQKIRFKLHDSQGGAIRSMELIRKNSLELALGRYRRVLLLDPG 319 Query: 255 HTSFSVANAPDEPHIE----------QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + P++P + +G+ +++K L+SR +P PSSV+++GE+GT Sbjct: 320 LPAHGGPVNPEQPVSSYLLNNHSQEVEFLGKGEEWKKIKELVSRTSPFPSSVLLLGETGT 379 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKEV+AR IH+LS R+ F+A+NC AIP +LL+SELFGYV GAFTGA + G G + A Sbjct: 380 GKEVLARTIHRLSQRQGN-FVAVNCGAIPRELLQSELFGYVGGAFTGARSGGSVGKFEHA 438 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDEIG+MP+ +Q LLR ++ R + I ++ P VD+RII+ATN+N+ + +G Sbjct: 439 HKGTLFLDEIGEMPMDMQVSLLRFLQERTVTKINSNYPKPVDVRIIAATNKNMYDLVGQG 498 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YRLNVI I +PPLRER+EDI +L +F+ ++ + I +E L +H Sbjct: 499 LFREDLYYRLNVIEINIPPLRERKEDIPMLAQFFVAELCKQFNILPKKIDEATMETLDRH 558 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N+ME V V+ +G+ I +LP + T + D+ G Sbjct: 559 VWPGNVRELKNVMEKAV-VMTAGDTITPDVLPKQIFQ---------TLEPPSPQPADNPG 608 Query: 545 GTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 A E EK I L +H Q A L I TLYR++ K+ + Sbjct: 609 TEAEELSEKDYILHMLEQHGGNVAQTAKALNIARNTLYRRLLKHNI 654 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 154/475 (32%), Positives = 242/475 (50%), Gaps = 36/475 (7%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 V + + D + + T+ + + ++ V V VN+ LG+ G+ Sbjct: 122 VVDQKQRLEREKDELRRHLETVFNAVPDAIVTVSSGFTVLSVNEACRNILGMDTAAAGGQ 181 Query: 204 PI---------RFRPLTFESNFTHGHMQH--IVSWDDKSELII----------------G 236 P PL E+ +Q + D+ E+I+ Sbjct: 182 PCDKALGSAAAECMPLLREAVRAGHIVQRGGVAVQHDRGEIIVDISAVPLACAATATEHS 241 Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + G + ++ T A A ++G VMR + RL+ +A + ++V Sbjct: 242 PGTDASGGVMLIVRDVTRLTGLERALAAQHIR-RSMIGRSSVMRGVFRLVESLADTDTTV 300 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 +V GESGTGKE+VA A+H R PF+ +NC+A+ E LLESELFG+V+GAFTGA+ + Sbjct: 301 LVTGESGTGKELVADALHHSGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKD- 359 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 +TG IQ A+ GTLFLDEIGD+ +Q KLLR ++ +EI +G P++VD+R+++ATN++ Sbjct: 360 RTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKS 419 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L +A GKFREDL+YRL V+ + LP LRER+EDI LL +F+ G+ Sbjct: 420 LRALVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSS 479 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 ++L ++ WPGN+REL + +E+ ++ G VI + LP L+ +G + Sbjct: 480 AQQLLVQYDWPGNVRELRHAVEHAF-IMAGGNVIPAAALPAELMQSGRFSAQSAGTGALR 538 Query: 537 HLSLDDAGGTALEEME-KQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 H + D A A E KQ + AL K + A LGI T+YR++++ + Sbjct: 539 HDAPDAAAQGA----EWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 160/467 (34%), Positives = 247/467 (52%), Gaps = 32/467 (6%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------R 206 D + ++D+ + + VD E RV ++N+ L V GKP+ R Sbjct: 8 SSDEMVDFLIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIPNTR 67 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELI----IGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 + + G +Q+I I G++ G+ LF + + Sbjct: 68 LQVVVKTGIPELGKVQNINGRRAIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELVSKLKE 127 Query: 263 APD------------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 D + E ++ + +K L ++AP +VM++GESG+GKE++A Sbjct: 128 EVDCYKRELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLA 187 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 +IH S R +KPF+ INCAAIPE ++ESELFGY GAFT A +NGK G ++ AN GT+F Sbjct: 188 HSIHSASTRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVF 247 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGDMP +QAKLLR ++ E+ +G+ P+ V++R+I ATN+N+ + + +G FR DL Sbjct: 248 LDEIGDMPPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADL 307 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRL+ I + +PPLRER EDIELL +FL T + I + +EIL+ + WPGN+ Sbjct: 308 YYRLSSIILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGNV 367 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA--- 547 REL +L+E L + G +I + LP L + E+ LS ++ G Sbjct: 368 RELQHLLETLCCI-TDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYI 426 Query: 548 ----LEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 + EK+++ E L +K++ A+ LGI TLY K++KY + Sbjct: 427 CSDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNM 473 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 163/508 (32%), Positives = 265/508 (52%), Gaps = 34/508 (6%) Query: 86 GCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFV 145 C C + L L++ ++A+ + ++ + + Sbjct: 48 TCPEGTACPYELILS--FKLEEDIF----VVALPKNIDRDLKLTPAFLVKFLLTVLEMLY 101 Query: 146 SKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 + E + I++ + + + + D++ ++ L + I Sbjct: 102 --IPEQKSDNLLIAEALQFLANQFNIEFFLFDNKGQL---------ILSQTHSPIQLSTF 150 Query: 206 RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 ++ G ++ +W + I + G ++ + + + + Sbjct: 151 TLWEKVSQTGEPEGFIK--TTWGNFYYRIFTKDGITTGSIVWKTEPTKQEENKFLFH--- 205 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + + G+ ++K L+ +IA + S+V++ GESGTGKE+ AR IH LS R+N PFI Sbjct: 206 DDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQGESGTGKELFARYIHYLSPRKNHPFI 265 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AINCAAIP+ LLESELFGY G+FTGA GK G + AN GT+FLDEIGDMPL LQAKL Sbjct: 266 AINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQLQAKL 325 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR +E R++ IGA+ +D+RII+ATN++L + I FREDLF+RLNV P+ +PPLR Sbjct: 326 LRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLR 385 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER++DI LL+ ++L + +P+ +EIL+ + WPGN+REL N++ Y V++ Sbjct: 386 ERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSIC- 444 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G++I LP L N ++ +S EV H + ++++ K + L+++ + Sbjct: 445 KGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQ------VDQL-KDQLEILLAKYGN 497 Query: 566 ----KKQVADELGIGIATLYRKIKKYEL 589 KK +A ELGI +ATLYR ++KY L Sbjct: 498 STQSKKLIAQELGISLATLYRWLRKYHL 525 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 164/528 (31%), Positives = 271/528 (51%), Gaps = 68/528 (12%) Query: 91 ENCREKAFLGT----PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 + CR+ L PV+ ++ +GV+ +QEHI D L Sbjct: 103 DECRDIMILKNIGILPVLRDNKIIGVL--------KQEHIRDYL---------------- 138 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 ++ +I + +G+ +++E V N+ + + +I+G+P+ Sbjct: 139 -----YMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSEDIVGRPMN 193 Query: 207 --FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH------------------NIQGRQL 246 E + + DK E + +H ++ ++ Sbjct: 194 EFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVCTEVDVTEAKI 253 Query: 247 FLMAFHQSHTSFS----VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + + + + + ++++G+ + + K + ++A + SS+ + GES Sbjct: 254 LALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNSSIFIWGES 313 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKEV ARAIH S R+ + FI +NC+AIP +L ESE FGY GAFTGAS G+ G+ + Sbjct: 314 GTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGASKKGRIGIFE 372 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A GT+FLDEI D+PL +QAKLLR ++ +EI +G + I+++ RIISATN++L++ + Sbjct: 373 LAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATNKDLSKMVK 432 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 KFREDL+YRLNV+ I +PPLRER+EDI LLVH FL ++ I+ DV++I + Sbjct: 433 AEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTISKDVIDIFQ 492 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 +RW GN+REL N +E +V V+ ID +P ++++ ++ TE E L L Sbjct: 493 NYRWKGNIRELKNTIENIV-VLSQNSKIDVDDVPSYMMDS----TNNSTEEEEYPLDL-- 545 Query: 543 AGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 A +++E + I +AL + +K + A L I TLY KI +Y++ Sbjct: 546 --TKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKI 591 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 162/497 (32%), Positives = 266/497 (53%), Gaps = 35/497 (7%) Query: 108 RCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMID 167 +G+I+ +A E Q ++ ++ S + K++ + + T ++ Sbjct: 214 HTLGLITALAKAIETQLKLNQTNELLTE-----SNSNLIKVIHEL---NTTMDTLETTLE 265 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF-------ESNFTHGH 220 MD+G++ +D R+ +N+ + + K I T + + Sbjct: 266 VMDEGIITLDPSGRIINMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALITAGKSVDI 325 Query: 221 MQHIVSWDDKSELIIG--QLHNIQGRQLFLMAFHQSHTSFSVANAPDE------PHIEQL 272 +++V +D+ II + N + +Q+ +H A A + E + Sbjct: 326 EENLVIGNDEQPYIINIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECI 385 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 VGE +++ + R A S +V+++GESGTGKE+ A+AIH S PF+A+NCAA+ Sbjct: 386 VGESEEIKKAVSIARRFATSSENVLLMGESGTGKELFAQAIHNHSC-PLGPFMAVNCAAM 444 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P +L+ESELFGY G+FTGA G+ G I+ A+ GTLFLDEIGDMPL LQA LLRA+E + Sbjct: 445 PRELIESELFGYEGGSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDK 504 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 +I+ IG +VD R+I+ATN+NL + + E ++REDL++RL+V+ IT+P LR R+ DI+ Sbjct: 505 QIMRIGGRRYKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDID 564 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 +L YF+ + ++ G P I + ++++ WPGN+R+L N + Y VN +VID+ Sbjct: 565 VLSQYFIKNYCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVN-SAHNDVIDT 623 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVAD 571 LP +L + + Q + +++ +LE +EK I+ AL + A Sbjct: 624 DSLPQYILLDSSPFQDEPNFTTDS---------LSLEHLEKNAIKTALLHAKNSIPDAAK 674 Query: 572 ELGIGIATLYRKIKKYE 588 LGI +TLYRK+K Y Sbjct: 675 LLGISRSTLYRKLKDYG 691 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 149/472 (31%), Positives = 261/472 (55%), Gaps = 40/472 (8%) Query: 146 SKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 S+L+ + + ++I +++N D V+V+D + V ++N+ + + + ++G+ + Sbjct: 14 SRLITTEYFKEWDAQILLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKLMGRNL 73 Query: 206 R--------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 R + + +++I S + S + L++ + ++ A + T Sbjct: 74 YDIEPQAKLLRVMEDGGGRDNDEVEYIKSLNIDSVGLAFPLYDSRKEKVGACAIFKDVTQ 133 Query: 258 FSVANAPDEPH-------------------IEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + + + + + +++ L +++A + ++++ Sbjct: 134 VVELTRKLQKSKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVANTNCTILI 193 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESG GKEV+A+ IH S R+ +P I +NCA+IPE LLESELFGY +GAFTGA GK Sbjct: 194 QGESGVGKEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTGARKGGKL 253 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN GT+ LDEIGDM L +Q+KLLR ++ +E+ +G + I++D+R+I+ATNQNL Sbjct: 254 GKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIAATNQNLE 313 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + + +FR DL+YRL+V+PI +P LR R+EDI LV YF+ + G + P Sbjct: 314 EMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEG---TDLTPGAA 370 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 +L ++ WPGN+REL N++EY + V +G++++ P L +G ++ + Sbjct: 371 RMLEEYGWPGNVRELQNVIEYAMIV-KTGDILEIKDFPQYLRGDG----AEDGPAEDGPC 425 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNSKKQVA-DELGIGIATLYRKIKKYEL 589 L D A+E++EK MI+ AL R+N K +A +ELG+ + Y K++KY L Sbjct: 426 RLKD----AVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGL 473 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 161/521 (30%), Positives = 256/521 (49%), Gaps = 26/521 (4%) Query: 85 EGCDSKENCREKAF-LGTPVILQDRCVGVISLIAVT---HEQQEHISDNLREFSDYVRHI 140 GC+ C++ + L D C + ++ ++ + H + ++ +R Sbjct: 141 SGCEHY--CQKLHSWTCSAAPLYDECGDISGVLQMSGPCEKTHPHTLGMVVASAEAIRKQ 198 Query: 141 STIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV-QNN 199 +++ E +S +F T M G LV+D + RV VN A K G Sbjct: 199 LSVWQRN-NELVLANAQLSHLFQT----MSDGALVIDADGRVIQVNPVARKVFGKELSGE 253 Query: 200 IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL---------HNIQGRQLFLMA 250 + + I + TH V ++E + L + G +F Sbjct: 254 KLNRIITAADSPDLISSTHSCKDLDVVLHTETEPVEALLTVKPLKDDNSDQSGAVVFFNP 313 Query: 251 FHQSHTSF-SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + A H ++GE ++ + + A + S V+++GESGTGKE++ Sbjct: 314 IRKMKKLVNRFGGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELL 373 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+AIH S RRN PF+A+NCAA+P L+ SELFGY GAFTGAS G+ G + A+ GTL Sbjct: 374 AQAIHNHSMRRNGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTL 433 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 LDEIGDMPL QA LLR ++ + + +G+ I VD+R+I ATN+NL +++G FR+D Sbjct: 434 LLDEIGDMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQD 493 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV I +PPLRER D+ELL + L + RL P + VV L + WPGN Sbjct: 494 LYYRLNVTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGN 553 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E +++ V E + LP + ++ V + + Sbjct: 554 VRELENVVERMIHTVEE-ETLHCAHLPREICCETPVGRALPDSVVTTQDAA--TLKQVVG 610 Query: 550 EMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 E E++++ + L R+ + +A E+ + T+YRK+ Y + Sbjct: 611 EQERRLLVDLLQRYQGNISLIAREMAVSRNTIYRKMHHYNI 651 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 214/366 (58%), Gaps = 10/366 (2%) Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 I + + + +++ S + PD ++G+ ++++ ++I ++A +PS Sbjct: 100 ITKPFDQAELSSVVAKAAKTNESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPS 159 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE++A A+H S RR+KPFI INCAAIP LLESELFGY +GAFTGA Sbjct: 160 TVLITGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAV- 218 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 K G + A+ GTLFLDEIG++P+ +Q KLLRAI+ E +G +VD+R+++ATN Sbjct: 219 TSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATN 278 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++L I G+FR+DL+YRL V+PI+LP LRER+ D+ +L +F+ + RRL GIA Sbjct: 279 RDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIA 338 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS------ 528 D + +L+ + WPGN+REL NL+E V + G +I + LP + + Sbjct: 339 DDAMALLQGYAWPGNIRELENLIER-VLLFADGPLITARDLPEPVRQGTGVQAGANLASA 397 Query: 529 -DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKK 586 +V + L D E+E+ +I + L + A L I +L K+K+ Sbjct: 398 VASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKE 457 Query: 587 YELLNT 592 + L +T Sbjct: 458 FGLRDT 463 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 246/504 (48%), Gaps = 30/504 (5%) Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPG-DNISKIFATMIDNMDQGV 173 L V + H ++ + I V + + ++ +++N+++GV Sbjct: 91 LTGVRDNMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLNNLNEGV 150 Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNI----IGKPIRFRPLTFES--------NFTHGHM 221 ++ + V + N L I + + + + N + Sbjct: 151 FILSSDGEVLYQNNALAGILATQSAQSTQPEIPRELLQKIQSGSGGDFVYHLNNKVYSVN 210 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN------APDEPHIEQLVGE 275 ++ E + + N+ ++++ + + + + Sbjct: 211 VAPFPCNESEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVSKISQEHYTFGNIFSV 270 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 M + L ++AP+ ++V++ GESGTGKE++A AIH+ S R++ P I INC AIPE Sbjct: 271 SPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINCGAIPEN 330 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 L ESE FGY GAFTGA GK G + A+ GTLFLDEIGD+PL +QAKLLRA++ Sbjct: 331 LAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFY 390 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 +G P+ VD+RII+ATNQNL + + +FREDL+YR+NV + LPPLRE+ EDI L Sbjct: 391 RVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTEDIMPLT 450 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 F+ ++ G I V++ L ++ WPGN+REL N++E LV G+ I L Sbjct: 451 KRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGK-ISIKAL 509 Query: 516 PPNLLNNGTTEQSDVTEVSEA---------HLSLDDAGGTALEEMEKQMIREALSRHN-S 565 P L D ++ E + S + ++E+E++ I ++L +H+ + Sbjct: 510 PSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLKKHSFN 569 Query: 566 KKQVADELGIGIATLYRKIKKYEL 589 K +VA EL I +TLY ++K + Sbjct: 570 KAKVARELNIPRSTLYYRMKVLNI 593 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 147/361 (40%), Positives = 216/361 (59%), Gaps = 10/361 (2%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHI--EQLVGECRVMRQLKRLISRIAPSPS 294 L ++ + + + + PH ++G R M L +I ++A S + Sbjct: 105 NLDELESVVMRALEYQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESSA 164 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ ARAIH+LS R +K F+ +NCAAIP+ LLESELFG+VKG+FTGA A Sbjct: 165 TVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNCAAIPDDLLESELFGHVKGSFTGAYA 224 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 N + G + A+ GTLFLDEIGDM LQ KLLR ++A+E P+G++ +VD+RII+A+N Sbjct: 225 N-RIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASN 283 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + +A FREDL+YRL+VIPIT+PPLR+R+EDI LL+++F R + G Sbjct: 284 KNLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVKGFT 343 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT--- 531 + +E+L + WPGN+REL NL+E ++ + SG I LP L T ++ Sbjct: 344 REALEMLCNYDWPGNVRELENLVERMITMKESG-FITVDDLPEKYLAPRTVVAPPLSVSG 402 Query: 532 --EVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYE 588 V + +A++ E +I +AL R +KK+ A L + TL K+KK Sbjct: 403 SVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRTTLIEKLKKKN 462 Query: 589 L 589 L Sbjct: 463 L 463 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 246/471 (52%), Gaps = 39/471 (8%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 ++K+ + + N+ KI+ +++ + + + +VD+E V F N+ + L + IGK Sbjct: 5 LAKIFKAKDTSCNVCKIYEYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAIGKH 64 Query: 205 I-------RFRPLTFESNFTHGHMQHIVSWDDKSELI--------IGQLHNIQGRQL--- 246 + R + ++Q+I + + I +G + I R + Sbjct: 65 VTEIIENTRLHVVISTEKPEIDYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDVDEV 124 Query: 247 ------FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 +A +++ + ++G + + +KRL ++A + ++V++ G Sbjct: 125 KSLAKKLQVAENKAKKFENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQG 184 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 E+G GKE+ A AIH S N PF++INCAAIP+ LLESELFGY +GAFTGA NGK G Sbjct: 185 ETGVGKELFAHAIHNNSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGKIGK 244 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A+ GT+FLDEIGDMPL +Q+KLLR ++ R+ +G + +VD+R+I+ATN N+ Sbjct: 245 FELADGGTIFLDEIGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDK 304 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT-RRLGSVYPGIAPDVVE 479 + +FR DLFYRLN I + +PPLRER EDI L+V L G+ + ++ Sbjct: 305 VRNNEFRADLFYRLNTISLIIPPLRERYEDISLIVDKSLKNLNSSEYGN--KRFSSQAMQ 362 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 L + WPGN+REL N++E L +V S ++++ + L + E+ T E + Sbjct: 363 TLTMYDWPGNIRELLNVVERLFFLVDS-DLVEENHVKQALSGINSEERKSNTNALEDQIH 421 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 L EK I AL N K Q A LGI TLY+K+KK + Sbjct: 422 LT----------EKDAIINALESCNGNKAQAAKLLGIHRTTLYQKMKKLNM 462 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 156/422 (36%), Positives = 240/422 (56%), Gaps = 18/422 (4%) Query: 173 VLVVDDENRVQFVNQTALKTLGVVQNN-----IIGKPIRFRPLTFESNFTHGHMQHIVSW 227 V+V+D ++ N + + L ++ + +I T G ++ Sbjct: 53 VVVLD----IKMPNLSGMDLLRGIKADRPDVEVIMMTAFATVETAVEAVKAGAYDYLTKP 108 Query: 228 DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLIS 287 + + + + R+ + +V E L+G+ MR + +L+ Sbjct: 109 FENIDEVSLTVAKAAERKALKDRTRALEEALTV-----RSQFEDLIGQSTQMRSVFKLVE 163 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 ++ S ++V++ GESGTGKE+VARAIH S R++KPF+A+NC+A+ E LLESELFG+VKG Sbjct: 164 TVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKG 223 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 +FTGA+ K GL +AA+ GT+FLDEIGD+P Q +LLR ++ E+ +GA+ P++VD+ Sbjct: 224 SFTGAT-GNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDV 282 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 R+I+AT+ +L++ +GKFREDLFYRLNVI I LPPLR+R ED+ LL H+FL L+ + Sbjct: 283 RVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVPLLAHHFLKLYASKAD 342 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 GI+P +E L +RW GN+REL N++E V V+ EVID LPP + Sbjct: 343 KKVTGISPRAMEALTCNRWTGNVRELENVIERAV-VLTGNEVIDVEDLPPGF-QSAPQPD 400 Query: 528 SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKK 586 S V S AHL A A+ E++ + L ++N + A G+ + R +K+ Sbjct: 401 STVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQ 460 Query: 587 YE 588 YE Sbjct: 461 YE 462 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 167/464 (35%), Positives = 246/464 (53%), Gaps = 35/464 (7%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-FRPL 210 D + + +I N+ +GV VVD + V + TA K V ++GK + F P Sbjct: 129 YSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVKSKELLGKKLESFFPT 188 Query: 211 TFESNFTHGHMQHI---VSWDDKSELIIGQL---------------HNIQGRQLFLMAFH 252 S DKS II + +I + Sbjct: 189 ALLLTVLKSEKPIRNVYHSPRDKSYAIISAVPIYINGELVAAVSTDRDITETANLSVELE 248 Query: 253 QSHTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + ++ ++++G+ +V+++ ++A + SSV++ GESGTGK Sbjct: 249 TTKEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVASTNSSVLIGGESGTGK 308 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 EV ARAIH++SGR+ PF+AINC+AIPE L ESE+FGY GAFTGA GK G ++ A Sbjct: 309 EVFARAIHQVSGRK-GPFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGKVELAEN 367 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEIGDMPL +QAKLLR ++ ++I+ +G P+ VD+RIISAT++NL + EGKF Sbjct: 368 GTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTMVMEGKF 427 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDLFYRLNV+ I LP L+ R EDI + ++ F+ + P I+ +V L + W Sbjct: 428 REDLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIPKISMEVFHTLMNYDW 487 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N +E+LV +GE+I + +P ++L Q T + Sbjct: 488 PGNIRELKNTVEHLVVFSKNGEII-MSSIPEHILEKIGDSQYVDTPE-------NYDLQE 539 Query: 547 ALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 ++ +E IR+A+ + +K Q A L I +TLY KIK Y + Sbjct: 540 NIKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNI 583 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 130/322 (40%), Positives = 206/322 (63%), Gaps = 11/322 (3%) Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 +Q++G+ + ++ K + + A S S+V+++GESGTGK + ARAIH R++ PFI +NC Sbjct: 428 QQIIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIHFSGNRKDGPFIKVNC 487 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 +AIPE LLESELFGY +G+FTGA GK G + AN GT+FLDEIGDMP +QAK+LR + Sbjct: 488 SAIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQAKMLRVL 547 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + REI IG I +D+R+I+ATN++L + I +FREDL+YRL+V+ I++PPLRE Sbjct: 548 QEREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPPLREMAS 607 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI +L + ++ ++ +V+ + ++ WPGN+REL N++E L+N+V ++ Sbjct: 608 DIPVLTQSLIERICKKHHVPPKKVSEEVMGVFCRYPWPGNVRELENMLERLLNLVEE-DI 666 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQ 568 I+ LP +L + + + + S +++ E+E+ I AL N++ + Sbjct: 667 INIDHLPAHLWQHIQSSRYLASGHSLDNMT---------SEVERDAIINALKATKNNRSK 717 Query: 569 VADELGIGIATLYRKIKKYELL 590 A LG+ +T Y K+K+Y+LL Sbjct: 718 AAKLLGLHRSTFYEKLKRYDLL 739 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 141/446 (31%), Positives = 230/446 (51%), Gaps = 33/446 (7%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN-------------NIIGKPIRFRP 209 ++D++++GV VD +Q +N A K G + + G+ R Sbjct: 11 NIVLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPIRQ 70 Query: 210 LTFESNFTHGHMQHIVSWDDK---SELIIGQLHNIQGRQLFLMAFHQSHTSFSV--ANAP 264 +I++ ++ + LH+ +GR + + Q + Sbjct: 71 TLTTGEPVVNRRTYILNAKEECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCRELK 130 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + +VG M+ + + +A S S+V++ GESGTGKE+ AR +H S R F Sbjct: 131 SHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRCRGQF 190 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+P+ LLESE FGY GAFT A ++G + A+ G++FLDEIGD+ LQ + Sbjct: 191 VPVNCAALPDTLLESEFFGYEPGAFTDA-KRSRSGRFELAHCGSIFLDEIGDISQALQVR 249 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ R + P+G+ +D+R+I ATNQNL + +G FR DL+YR+ VI + +PPL Sbjct: 250 LLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRIPPL 309 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER++DI LL+ +F++ + G+ V+ L ++ +PGN+REL N++E Sbjct: 310 RERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAFVFC 369 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 G +I+ LP L + +++ L D G L+EME+ +I AL + Sbjct: 370 -QGALIEMRHLPSELRD------------TQSRNLLGDKQGLTLKEMERALITRALQINK 416 Query: 565 SKKQ-VADELGIGIATLYRKIKKYEL 589 ++ A LGI +TLYRK+K E+ Sbjct: 417 GHRKNSARTLGINPSTLYRKMKALEI 442 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 155/466 (33%), Positives = 237/466 (50%), Gaps = 38/466 (8%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----- 205 + ++ + D++ G LV D++ + N+ LGV + IG+ Sbjct: 7 RIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHCTESVV 66 Query: 206 --RFRPLTFESNFTHGHMQHIVSWDDKSELI-------------------IGQLHNIQGR 244 R + +I+ + I + L + Sbjct: 67 NSRMHIVARTGKPEINQSHNIIGKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDLSRLASE 126 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 L + + + + + + ++G +++LK R A + V++ GESGT Sbjct: 127 LKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLICGESGT 186 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A+AIH S R+ PF+ INCAAIP+ LLE+ELFGY KGAFTGA ++GK G + A Sbjct: 187 GKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKPGKFELA 246 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDE+GD+PL +Q KLLRA+E RE +G + I+ D+RII+ATNQ+L Q +A+G Sbjct: 247 HQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLDQMMADG 306 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FR+DLFYRLNVIPI +PPLR+R+ DI Y L + LR H Sbjct: 307 RFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQAALRNH 366 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 +WPGN+RELSN++E ++ + +G I + LP L + + + +A Sbjct: 367 QWPGNVRELSNVLERTLSAL-NGRTIGLSDLPFYLHQDRKPLSNGGSSSLKAVQ------ 419 Query: 545 GTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 +E++ I AL + +K + A+ LGI LY+KIKKY + Sbjct: 420 ----ARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAI 461 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 154/537 (28%), Positives = 272/537 (50%), Gaps = 27/537 (5%) Query: 70 KTEKVVTQSRFDPLCEGCDSKEN-CREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 K + C +N C A L + +G + + H S Sbjct: 161 KKPVYIVGP-EHY----CTVFQNSCTSAAPLT---NEDNEIIGYLVVSYHIDFPLSHDSY 212 Query: 129 NLREF-SDYVRHISTIFVSKLLEDQGPG--DNISKIFATMIDNMDQGVLVVDDENRVQFV 185 L + + ++ +KL + + + ++ +++G+++ D+ ++ + Sbjct: 213 YLSTYPLGLITAMAVAVENKLRFTKSYQLLKSAHHMQEVILSVIEEGIIITDNRGKIITI 272 Query: 186 NQTALKTLGVVQNNIIGKPIRFRP-----LTFESNFTHGHMQHIVSWD-DKSELIIGQLH 239 N+ + + IIG+ I +N T + I S + DKS L++ + Sbjct: 273 NKEVVNIFNTAEEEIIGRTIDRFLGPQIGEAVRNNETVDIEEAICSNNHDKSYLVLIRPL 332 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDE------PHIEQLVGECRVMRQLKRLISRIAPSP 293 + G + A + ++++G+ + +++ L R + S Sbjct: 333 DKHGNYPNGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSN 392 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 ++++ GESGTGKE+ A+AIH R PFIA+NCAA+P +L+ESELFGY G+FTGA Sbjct: 393 ENILLTGESGTGKELFAQAIHNA-HRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGAE 451 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 G+ G I+ A+ GTLFLDEIGDMPL +QA LLR +E ++++ IG + +VD R+++AT Sbjct: 452 RRGRAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAAT 511 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N++L + E FR DLF+RL+++ I LPPLR+R D+E+L +YF+ + ++ P I Sbjct: 512 NKDLERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLI 571 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 + + +E+L+ + WPGN+R+L N + Y VN+ G++I LP +L ++ + + Sbjct: 572 SEEALEVLKSYGWPGNVRQLENSVIYAVNL-AQGDLIQCRHLPESLYAASSSPAENYRDP 630 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 S ++ MEK +I AL + + + ++ LG+ +TLYRK K+ + Sbjct: 631 PGMTGSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKAKELNI 687 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 158/472 (33%), Positives = 260/472 (55%), Gaps = 40/472 (8%) Query: 147 KLLEDQGPGDN-ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 +++E + + ++ ++ +I+N +G++VV+ + + F+N T L LG+ +++ IGK + Sbjct: 10 QIIEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKSDAIGKHV 69 Query: 206 --------------RFRPLTFESNFTHGHMQHIVSWD--DKSELIIGQL-----HNIQGR 244 RP+ ++ +G +V + +IG + +I Sbjct: 70 WDVTSHSQLPQVIETGRPILYDFWEVNGRKLIVVRIPIINNEGNVIGAIGKSLFTDIPSG 129 Query: 245 QLFLMAFHQSHTSFSVAN------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 +L + + + L+GE ++++K+L ++A S S++++ Sbjct: 130 KLLFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVASSNSTILI 189 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE++A+AIH R +PF+ +NCAA+PE LLE+ELFGY GAFTGA GK Sbjct: 190 TGESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTGAKKGGKP 249 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A GT+FLDEIG++PL +Q+KLL ++ RE+ +G + +D+R+ISATN+NL Sbjct: 250 GKFELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVISATNRNLE 309 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + G FREDL+YRLNVI LP LRER EDI LLV+Y H ++L G + Sbjct: 310 DMVKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHVEGYTEQAM 369 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++L K+ WPGN+R+L N +E + + +++ + +P L S+V S A Sbjct: 370 QLLTKYHWPGNVRQLENALERMFSF-TDDKILSTEHMP-FLKKIVNVNSSEVNTKSLAE- 426 Query: 539 SLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 + E EK+MI +AL + ++ + A L I ++ LYRKIKKY++ Sbjct: 427 --------TIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 163/502 (32%), Positives = 258/502 (51%), Gaps = 21/502 (4%) Query: 99 LGTPVILQDRCVGVI-SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDN 157 + + + D C G + +I T + L ++ T + L+ + Sbjct: 169 VCSAAPVHDPCTGELLGIIDFTAPHEYAQPHTLEMARIIALNLQTEYSRISLDTKNY--- 225 Query: 158 ISKIFATMIDN-MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 + + +A + + + +L+ D R+ A L +Q+ G R + ++ Sbjct: 226 LYEEYAKVRNRWPGEALLLFDRTLRIIAETPEARNFLCNLQHQFPG--CSPRAVIRDALL 283 Query: 217 THGHMQHIVSWDDKSELIIGQLHNIQGRQL--FLMAFHQSHTSFSVANAPDEPHIE---- 270 G + H + D + G+Q+ ++ S + + + + I Sbjct: 284 ACGGVTHTIELLDPKYKLTSMPVLRNGQQVGCIILLARDSQSRHTRGHRVTDNAINVNHP 343 Query: 271 --QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 ++G RV+++ + +A + + V++ GESGTGKE+ ARAIH+ S R +PF+A+N Sbjct: 344 WRTIIGSSRVIQRAIQRAQIVAATNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVN 403 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 AA+P +L+ SELFGY GAFTGA GK G + AN GTLFLDEIGDMPL LQ LLR Sbjct: 404 IAALPRELIASELFGYEPGAFTGAHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRV 463 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ ++I +G+++ VD+RII+ATNQNLAQ +A G+FR DLFYRLNV+ I LPPLR+R Sbjct: 464 LQEKKITRLGSTTSEAVDVRIIAATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRL 523 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 D+ + +FL L ++ P+V+ + +++ WPGN+REL N++EY V + Sbjct: 524 ADVPSIAQHFLSLFAQKHDKSVERFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDS 583 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-K 567 I LP L + EVS+ + A+E E+++I L + N Sbjct: 584 -ITVNDLPDYLTRSIFKN----LEVSDKPIYDTIEMSDAIENEERRLIAYWLEKTNGNIS 638 Query: 568 QVADELGIGIATLYRKIKKYEL 589 QVA +L T+YRKIK Y L Sbjct: 639 QVARQLRRSRTTIYRKIKHYGL 660 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 163/528 (30%), Positives = 248/528 (46%), Gaps = 42/528 (7%) Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLGTPV--ILQDRCVGVISLIAVTHEQQEHISDNLR 131 V+ + + EN + + PV +G+++L + H Sbjct: 147 VLRTKQSSQVLFSEHFCENVHDWYCVAFPVLAPFTKELLGIVNLAGNASDVHRHSIGY-- 204 Query: 132 EFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK 191 + + +S T ++ MD VL VD +++ N+ A + Sbjct: 205 ----ALAEAKNMALSLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQILTRNEGANR 260 Query: 192 TLGVVQNNIIGKPIRFRPLT--FESNFTHGHMQHIVSWDDKSELIIGQ-----LHNIQGR 244 + I + L +N + I + +I G Sbjct: 261 SERFQNETSIASFPELKALVANVRTNGQQIVNEQIQDGSTNKRYQVSIYPVRFQDHIYGV 320 Query: 245 QLFLMAFHQ--SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 +FL + + S A +VG + L + + A S++++ GE+ Sbjct: 321 VIFLQQDQRVVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGET 380 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKEV+A+AIH+ S R KPF+AINC A+P LLESEL GY GAFTG+ A G G + Sbjct: 381 GTGKEVLAQAIHQASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFE 440 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 AN GT+FLDEIGDMPL LQ LLR +E R + IG S PI VD+R+ISATN++L + + Sbjct: 441 QANGGTIFLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQ 500 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 +G FREDL+YRL V+ + LPPLRER EDI +L+ FL + G + + + IL Sbjct: 501 KGTFREDLYYRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILE 560 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 ++ WPGN+REL N+++ + V+ G+VI LP + + + Sbjct: 561 RYHWPGNIRELKNVLQQAMFVM-DGDVIHPHHLPDSFYSQTQS----------------- 602 Query: 543 AGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 +E EKQ + AL + + + A L + AT+YR++KKY L Sbjct: 603 ------DEYEKQKLLRALEQQEGNVTKAAASLNMSRATIYRRLKKYRL 644 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 154/440 (35%), Positives = 234/440 (53%), Gaps = 23/440 (5%) Query: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNII---------GKPIRFRPLTFESNFTHGHM 221 ++V D +F+N+T ++ + + + + G++ Sbjct: 92 DPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTFQARKVGVLSADCTIEPGSGNL 151 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQ 281 + II Q ++ + + + + D IE +G R+M+Q Sbjct: 152 DEELRVLTTISSIIAQAVILRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRIMQQ 211 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 + + +A S ++V+++GESGTGKEVVA+AIH S R +PF+ INCAAIPE LLESEL Sbjct: 212 ISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSPRNRRPFVQINCAAIPESLLESEL 271 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FG+ KGAFTGA + + G + A+ GTLFLDE+G++ +Q KLLR ++ R + +G + Sbjct: 272 FGHEKGAFTGAHVS-RPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTK 330 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 I VD+RII+ATN+NL + I + +FREDL+YRLNV+PI LPPLR+R+EDI LLV++FL Sbjct: 331 TIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGR 390 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV------IDSTLL 515 + G I+P+ + L +H WPGN+REL N ME LV + + + L Sbjct: 391 FNQENGRSM-TISPEAISALIEHDWPGNVRELENTMERLVVMTQADSIDITDVRRTLALF 449 Query: 516 PPNLLNNGTTEQSDVTEVS--EAHLSLDDAG---GTALEEMEKQMIREALSRHNS-KKQV 569 P L + E+ + S E SL A+ E+E+ I + L R K + Sbjct: 450 PSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILDVLDRTGWIKTRA 509 Query: 570 ADELGIGIATLYRKIKKYEL 589 A LGI L ++ KY + Sbjct: 510 AALLGITPRQLGYRMMKYGI 529 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 208/352 (59%), Gaps = 13/352 (3%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 Q+ G+ L + Q + ++GE ++ + +I R A + ++V Sbjct: 110 QVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATV 169 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 +++GESGTGKE++A+A+H+ S R++KPFI ++CAA+ E LLESELFG+ KG+FTGA A Sbjct: 170 LILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALAR- 228 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A+ GTLFLDEIG++ +Q KLLR ++ RE +G + ++VD+RI++AT+++ Sbjct: 229 KEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRD 288 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + G+FREDL+YRLNV+ +TLPPLR+R+ D+ LV++FL ++ G G+AP Sbjct: 289 LVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPG 348 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 ++ L H WPGN+REL N +E V V+ G+ + + LPP L S + Sbjct: 349 TLQALLSHDWPGNIRELENAIERAV-VLAQGQELSTDDLPPVLRGPRPHGTSTGALIP-- 405 Query: 537 HLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKY 587 G L +E++ I L S + A+ LGI + + ++K+Y Sbjct: 406 --------GATLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 151/477 (31%), Positives = 256/477 (53%), Gaps = 20/477 (4%) Query: 127 SDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 S + +I + + +E N K+ +ID + G+L ++ +++ N Sbjct: 52 SAKKVSIIKKLLNIDGVIKVQEVELLSYEKNERKLL-AIIDAVQDGILAINHNEQIELFN 110 Query: 187 QTALKTLGVVQNNIIGKPIRFR-------PLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 K + I+GK IR ++ + +++ + I Sbjct: 111 NYCEKIFHTKKEYIVGKNIRQLLGFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGR 170 Query: 240 NIQGRQ-------LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPS 292 +++ + L +++ +V + ++ + ++G M + +++ +A Sbjct: 171 SVKDDKGQTLAAVASLKDINEAIEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANG 230 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 S++++ GESGTGKE+ A+AIHKLS R +K F+AINCAA+P+ L+ESELFGY KG+FTGA Sbjct: 231 NSTILLRGESGTGKELYAKAIHKLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGA 290 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 GK GL +AA+ GTLFLDEIG++ L LQAKLLR ++ I IG++ ++D+RII+A Sbjct: 291 IEKGKDGLFKAAHNGTLFLDEIGELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAA 350 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 TN+NL I++ FREDL+YRLNVIPI +P L++R EDI +LV++F+ +++G G Sbjct: 351 TNRNLEDMISKNTFREDLYYRLNVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKG 410 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 +E L WPGN+REL N++E +N+ G ++ L + N E T Sbjct: 411 AEMAFIEKLVNSNWPGNVRELKNVVERAMNLC-HGSLLKEENLIMDFEKNSNYE----TA 465 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 + + + +E EK+ + A+ ++ S ++ A LG+ T+ K+ KY++ Sbjct: 466 SDDYEFNFNFKLKDVVEAAEKKALISAIKKYKSCRKAAKALGVSHTTIINKLNKYKI 522 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 155/460 (33%), Positives = 232/460 (50%), Gaps = 39/460 (8%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK--- 203 ++L + ++++ G++V+D + + VN+ + L + ++ G+ Sbjct: 191 RILRRNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQEVS 248 Query: 204 ----------PIRFRPLTF--ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 IR P + Q+I ++ G + F Sbjct: 249 VLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQSMLGVVLEFEPID 308 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + ++A E ++G R+ + + R A S S+V++ GE+GTGKE+ A+ Sbjct: 309 SVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKELFAQ 368 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S RR+ PF+ INC AIP +LLESELFGYV GAFTGA G+ G + A+ GT+ L Sbjct: 369 AIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGTILL 428 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMP +Q KLLR ++ E+ IGA P VD RII+ T+ +L + +A G+FREDL+ Sbjct: 429 DEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFREDLY 488 Query: 432 YRLNVIPITLPPLRER-QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 YRLNV+PI +P LRER ++DI L +FL R P + V+ L H WPGN+ Sbjct: 489 YRLNVLPIVIPALRERGRDDILALTEFFLS----RNRVTPPQLTVGAVKALENHPWPGNV 544 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N ++ +++ E ID+ L G E + S LEE Sbjct: 545 RELENTIQRALHLCEENE-IDAACL-------GVPETAAAASSS--------TPRGTLEE 588 Query: 551 MEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 +E+ I + L + + A LGI ATLYRK+K+Y L Sbjct: 589 IERLAIEQTLEDTKGNMAETAKTLGISRATLYRKVKRYSL 628 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 163/477 (34%), Positives = 247/477 (51%), Gaps = 35/477 (7%) Query: 145 VSKLLEDQGPGDNISKI----FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI 200 ++ + G D +S I F I+++ VL+ D ++ V+ +N+ GV N I Sbjct: 101 IAGFINTSGSNDFLSLITTPFFDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGI 160 Query: 201 IGKPIRFR------------------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 GK + E + + + VS K + +I Sbjct: 161 EGKKVNSVRKGAQISHAVNTGVAMKNIYRQEGDREYFVDLYPVSVGGKILGGVVLAKDIT 220 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPH------IEQLVGECRVMRQLKRLISRIAPSPSSV 296 Q +Q T FS + H + ++ + M+ L ++A S +++ Sbjct: 221 EIQHLTKKVNQWKTQFSKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNI 280 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGK++ ++AIH S R+N PF+AINCA+I L+ SELFGY GAFTGAS G Sbjct: 281 LIRGESGTGKDIFSQAIHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGG 340 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K GL + AN GTLFLDEIGDM L LQ+KLLRA+E I +G S+ I+V++R+I+ATN + Sbjct: 341 KIGLFELANKGTLFLDEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVD 400 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + I + +FR DL++RLN+IPI LPPLR+R+E+I LV L + L I P+ Sbjct: 401 LEEKIRKNEFRSDLYFRLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLI-ITPE 459 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V L+ + WPGN+REL N++ + ++ +VI LP + + + + Sbjct: 460 TVTSLKHYHWPGNIRELQNVLVFAATMIDE-DVITIDCLPKKIKER-ILDHAVPPQPPHE 517 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 S + E+EK I + L + KK+VA LGI +ATLY KI +Y + Sbjct: 518 PRSFITPLRESQSELEKDKISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGI 574 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 160/479 (33%), Positives = 246/479 (51%), Gaps = 38/479 (7%) Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI-FATMIDNMDQGVLVVDDENRVQ 183 + F + R I + L ++ K +IDN+ +GVL D ++ Sbjct: 113 DLEGQRVAFREAARIIKDLVHDLLNRGYYASFSLYKANIERLIDNLHEGVLAHDLGRKIF 172 Query: 184 FVNQTALKTLGVVQNNIIGKPIR-----------------FRPLTFESNFTHGHMQHIVS 226 F ++ A + G+ ++IGK P TF+ I Sbjct: 173 FFSKGAERITGLSAVDVIGKNCHDVFVPRLCGENCSFCDGCEPPTFQKKSYSTVAPEIEG 232 Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA--NAPDEPHIEQLVGECRVMRQLKR 284 + ++ + L + GR ++A T+F A E ++G MR L Sbjct: 233 QRKELDVTVVPLRDPAGRIQGVVAALADQTAFKEAVRGQKGEDGFAGIIGRTPEMRSLFH 292 Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 I ++ V + GE+GTGKE+VARAIH S RRN PF+ INC A+PE L+ESELFG+ Sbjct: 293 QIRDLSVYDVPVNISGETGTGKELVARAIHGESTRRNGPFVPINCGALPEGLVESELFGH 352 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 V+G+F+GA + K G + A+ GT+FLDE+ ++P+ Q KLLR ++ + +G+ Sbjct: 353 VRGSFSGAVRD-KKGRFELAHNGTIFLDEVAELPMSTQVKLLRFLQEGVLEKVGSEKQTS 411 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 VD+R+ISATN+NL + +A+G FREDL+YRLNV+PI LPPLR R+ DI LL +YF+ Sbjct: 412 VDVRVISATNKNLKKEVAKGTFREDLYYRLNVVPIHLPPLRMRKNDIPLLANYFVRHAAM 471 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 + I D + +L ++ WPGN+REL N++++LV + SG I + LPP + Sbjct: 472 GARTGNVTITDDAMGLLAEYAWPGNVRELQNIIQFLV-IKASGNKITAAHLPPEI----- 525 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYR 582 Q D T + + + ++E AL++ +K + A LG+G ATLYR Sbjct: 526 --QGDGTPLPQKRGRRNKLDTGSVET--------ALAKAGGNKAKAARLLGVGRATLYR 574 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 144/385 (37%), Positives = 218/385 (56%), Gaps = 16/385 (4%) Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGE 275 G +I D++E+ + ++ R L + ++ D ++GE Sbjct: 96 LKTGAFDYITKPFDQNEVRVVVKKALRTRDLASADATRDVSAAQPRGGSDRFG---IIGE 152 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 +++L ++ R+A +P++V++ GESGTGKE+VARA+H+ SGRR++PFI +NCAAIP+ Sbjct: 153 SPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAAIPKD 212 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 L+ESELFGY +GAFTGA A+ K G + A+ GTLFLDEIG++P +Q KLLR ++ E Sbjct: 213 LMESELFGYERGAFTGAVAS-KPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFE 271 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 +G I VD+R+++ATN++L + IA G FREDLFYRLNV+PI LP LR+R+ DI L Sbjct: 272 RVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLC 331 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +F+ RL I P+ +E L H WPGN+REL N++E + + G I L Sbjct: 332 AHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERAL-LFADGARIRLDDL 390 Query: 516 PPNLLNNGTT----------EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HN 564 P + T+ +D + L + A+ ++E+ +I AL + H Sbjct: 391 PEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHG 450 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 + A L I L K+K+ L Sbjct: 451 NVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 132/358 (36%), Positives = 209/358 (58%), Gaps = 14/358 (3%) Query: 231 SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIA 290 L + + + + L + + + + +VG+ + + ++ R A Sbjct: 113 KPLDVNAVLVVLEKALEKLRLQRDTANLR-ERVRERYRFHNIVGDAPELHAVYEVVKRAA 171 Query: 291 PSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT 350 P+ ++V+++GESGTGKE+ A+A+H+ S R +K FI +NCAA+ E LLESELFG+ KGAFT Sbjct: 172 PTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFT 231 Query: 351 GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRII 410 GA K G + A+ GTLFLDEIGD+ LQ KLLR ++ RE +G + ++VD+R++ Sbjct: 232 GAI-GRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLV 290 Query: 411 SATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVY 470 +ATN++LA + G+FREDL+YRLNV+ +TLPPLR+R+ DI LV +F+ +++ G Sbjct: 291 AATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDI 350 Query: 471 PGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDV 530 G+AP + + H WPGN+REL N++E V V+ G + + LPP L E++ Sbjct: 351 RGLAPGTLNAVLSHDWPGNVRELENVVERAV-VLCKGSELTADDLPPTLRGPRPRERAPG 409 Query: 531 TEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKY 587 + G L E+E++ I L S + A+ LGI + + ++K+Y Sbjct: 410 ALIP----------GATLYEIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 246/471 (52%), Gaps = 45/471 (9%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----- 205 + +++++A+++D+ ++VVD V +N LG +IG+ + Sbjct: 104 ETNSLKALNELYASLLDDFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKDILP 163 Query: 206 ---------------------RFRPLTFESNFTHGHMQHIVSWDDKS----ELIIGQLHN 240 R + L H++ K+ +L + Sbjct: 164 FTSLPEVLSSGMAVAGREVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSD 223 Query: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 + R L + + D+ + ++G M +LK++ +R+A ++V++ G Sbjct: 224 LARRLQVLEGKVLFYQQELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITG 283 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE++A+AIH+ S RRN+P I INCAAIPE LLE+ELFGY +GAFTGA+ GK G Sbjct: 284 ESGTGKELLAQAIHRASPRRNEPLIKINCAAIPENLLEAELFGYEEGAFTGAARGGKPGK 343 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A+ GT+FLDE+GD+PL +Q KLLR ++ R +G I+VD+RII+ATNQ+L Sbjct: 344 FELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDLLAL 403 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 A GKFR DL+YRL V+ +T+PPLRER D+E+LV + R G+ P+V + Sbjct: 404 EAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRL 463 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSG-EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ++ WPGN+REL N++E+ N + G E+I LP + Sbjct: 464 FSRYSWPGNVRELENVLEHAFNFLDPGEEIITLKHLPATMQRTIGGGGG----------- 512 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYEL 589 +A+ E+++I +AL+ KQ A LGI + LY+K+K+Y++ Sbjct: 513 --LKLKSAVATAEREVILKALAAAGGNKQEAARLLGIHPSGLYQKLKRYDI 561 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 234/469 (49%), Gaps = 43/469 (9%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 K + + + F + N G+ + D VN+ + GV + +IG+ + Sbjct: 93 KFAPQMEQLEQMYQDFREIYRNSFDGIFIADGTGTTLMVNEGCERNYGVPASEMIGRHVS 152 Query: 207 FRPLTFESNFTHGH--MQHIVSWDDKSELIIGQLHNIQGR-------------------- 244 + N ++ E IG+ + G Sbjct: 153 EFQRSGLINPVIAMRVIESRQRISAVQETSIGKTIMVTGIPLLDDQGAVRKVIINSRDTT 212 Query: 245 -----QLFLMAFHQSHTSFSVANAP---DEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 Q L + F + + D P I L+ M+Q+ L ++A ++V Sbjct: 213 ELIQLQEELARAQEKLHRFEMEVSQLRMDNPAIAGLITRSPGMQQITALAQKVAKVSATV 272 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESG GKEV+ R IHK S PF+ INC AIP LLESELFGY GAFTGA G Sbjct: 273 LISGESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQG 332 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G+I+ A+ GTLFLDEIG++PL LQ KLL+ ++ R + +G + PIQVD+R+++ATN++ Sbjct: 333 KVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRD 392 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + +FR DLFYRLNV+P+ +PPLRER+EDI L+ ++L + ++ Sbjct: 393 LQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDELNAQYDLD-KRLSEQ 451 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 + L + WPGN+REL N++E LV P +I S LP L + +E+ Sbjct: 452 ALAALLDYDWPGNVRELRNMVERLVVTAPES-LIRSDSLPTLLRS---------SELESD 501 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIK 585 LD +A E+++++EA+ R+ + + A L + +T+ R++K Sbjct: 502 LARLDIKARSA--HFERKIVKEAVERYGNTRAAAKHLQVSQSTVVRRLK 548 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 145/328 (44%), Positives = 209/328 (63%), Gaps = 10/328 (3%) Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 LVG MR++ + ++A + ++V+V+GESGTGKE+VARAIH S RR +PF+ Sbjct: 169 RDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFV 228 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 +I+CAAIPE LLESELFG+ KGAFTGA K G + AN GTLFLDE+G++P +Q KL Sbjct: 229 SISCAAIPEGLLESELFGHEKGAFTGAIRR-KLGRFELANGGTLFLDEVGEIPHAVQVKL 287 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ R+ +G ++VD+R++SATN+NLAQ + G+FREDL+YRLNV+PI LPPLR Sbjct: 288 LRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLR 347 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 +R D+E L +F+ R+ G+AP+ +E+LR+HRWPGN+REL N++E + V Sbjct: 348 DRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQAL-VFA 406 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 GE++ LP + V S D + LE++E+Q+I A + Sbjct: 407 EGELVRPRDLPEGVRKAPPAPSLPVP-------SGDRSLTDILEDLERQLILAAYEKARG 459 Query: 566 -KKQVADELGIGIATLYRKIKKYELLNT 592 K + A LGI + LY K++KY ++ Sbjct: 460 VKAETARLLGIKPSALYYKLEKYGIVKA 487 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 227/387 (58%), Gaps = 12/387 (3%) Query: 209 PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT--SFSVANAPDE 266 P+ + F + + I+ + L A QS T +F A P Sbjct: 77 PVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDTVATFPQAQEPAS 136 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 ++G MR + + I R+A S ++V++ GESGTGKE+VARAIH S RRN PFI Sbjct: 137 STGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIK 196 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCA +P+ LLESELFGY KGAFTGAS+ K G + A+ GT+F DEIG++ L QAKLL Sbjct: 197 VNCANLPDSLLESELFGYEKGAFTGASS-LKVGRFELAHEGTIFFDEIGEISLATQAKLL 255 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 RAI+ +E +G + I+V++RI++ATN+ L Q + EG+FREDLF+RLNV+ I +PPLR+ Sbjct: 256 RAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRD 315 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+EDI LL+ +FL + + G + + +++L + WPGN+REL N++E + ++ Sbjct: 316 RKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSI-IMAR 374 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS- 565 G +I + L ++Q E+ + +LSL + ++E+++I +AL +N Sbjct: 375 GAIIVPEDI---QLGATVSQQPTELEILDENLSLKQ----IISDVERKVILKALEENNWC 427 Query: 566 KKQVADELGIGIATLYRKIKKYELLNT 592 + VA L I +LY K+K+ + Sbjct: 428 RTTVAKVLKINRRSLYAKMKELGIEEN 454 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 145/348 (41%), Positives = 210/348 (60%), Gaps = 17/348 (4%) Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + +F + D + +VG+ + M++L LI ++A ++V+V GE+G Sbjct: 117 QNVFERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETG 176 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+VAR IH N PF+ I+CAA+PE LLESELFG+ +GAFTGA+ K G I+ Sbjct: 177 TGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ-KKGQIEL 235 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEIG++PL LQ K LR ++ +EI+ +G + +VD+RII+ATN++L IA Sbjct: 236 AHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAA 295 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G++REDLFYRLNVI I +PPLRER++DI LV++FL + + G G+ +V+E+ Sbjct: 296 GQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMA 355 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E V V+ G+ I + LPP L S Sbjct: 356 YDWPGNVRELENVIERAV-VLCMGDSIAMSCLPPKLQERSAPAPS--------------T 400 Query: 544 GGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELL 590 G L EMEK++I + L + ++ A ELGI L K+K + LL Sbjct: 401 DGVNLMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGLL 448 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 152/504 (30%), Positives = 271/504 (53%), Gaps = 26/504 (5%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA 163 L +G+IS +A + E + + ++ + +T +L + + + + Sbjct: 219 HLYMHTLGLISSLATSIETKIKLVNHTECLEKSLED-ATKLNEELKKAKDNMASAHESLT 277 Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH----- 218 +D+G++ VD++ +++ +N A++ I + + L+ ES+ H Sbjct: 278 ASFAFIDEGMIAVDNKGKIRQINNEAMRIFRAHPEEIGNRNLNEF-LSAESSIMHRANKG 336 Query: 219 ---GHMQHIVSWDDKSELIIGQLHNIQGRQL---------FLMAFHQSHTSFSVANAPDE 266 + + +K+ + I + + ++ + + Sbjct: 337 ESFTVDECVKVGTNKARPYRISVRPILNQYTKKLDVVILKLISCEKLNNAQSNRSGRSAT 396 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 IE ++GE ++ SR A SP +++++GESGTGKE+ A +IH + R N PF+A Sbjct: 397 YQIEDILGESVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNI-YRPNGPFMA 455 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAA+P +L+ SELFGY G+FTGA GK G I+ A+ GTLFLDEIGDMPL QA LL Sbjct: 456 VNCAALPRELVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPLEHQAILL 515 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R+++ + ++ IG + +VD R+++ATN++L Q + E FREDL+YR++V+ I +PPLRE Sbjct: 516 RSLQDKRVMRIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGIFIPPLRE 575 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R +DI LL F+ + +R+G P ++P+ +++ +++WPGN+R+L N + + +N + Sbjct: 576 RGKDISLLSRLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHHAIN-TAN 634 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS- 565 VI+ + LP +L++ T+ S + ++ +EK+ I AL R N+ Sbjct: 635 DNVIEPSNLPGYVLDDTTSPSSTGLP----RFAGAGDHNLCIKTIEKEAIEAALLRANNC 690 Query: 566 KKQVADELGIGIATLYRKIKKYEL 589 A+ +G+ +TLYRK+K Y + Sbjct: 691 IPTAAEIVGLSRSTLYRKLKDYNI 714 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 264/516 (51%), Gaps = 41/516 (7%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREF--SDYVRHISTIFVSKLLEDQG--PGDNIS 159 I++ + V V + + + I +N+ D I+ I + + D + Sbjct: 85 IMKKKVVSVEKGMPIDECRDLMIKENIGILPVVDDNGKITGILRQEHIRDYLYMQLEEYG 144 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP---------- 209 +I ++ +G+ V++E V N + G+ ++I+G+PI Sbjct: 145 ITLKYIIGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLEDTICERVLR 204 Query: 210 ---------LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV 260 T++ +G + + E + + + ++F T+ + Sbjct: 205 RRIGISDVYSTYKKQDMYGLVHANPIFFG-GEFVGVVCTELDVTEARNLSFELEKTNEKL 263 Query: 261 ANAPDEPH------IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 DE E ++G+ + + K + +IA + SS+ + GESGTGKEV +RAIH Sbjct: 264 KYLQDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEVFSRAIH 323 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 + SGR+ F+ +NC+AIP +L ESE FGY GAFTGA+ GK+G+ + A GT+FLDEI Sbjct: 324 EQSGRK-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGTVFLDEI 382 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 D+PL +QAKLLR ++ +E+ +G I+++ RIISATN++L + + E KFREDL+YRL Sbjct: 383 ADLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFREDLYYRL 442 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV+ I +PPLRER+EDI +L+HYFL R G ++ + +IL +RW GN+REL Sbjct: 443 NVVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKGNIRELK 502 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 N +E +V V+ +I+ +P ++ + D +A+E++E + Sbjct: 503 NTVENMV-VLSDSSIIEKDAIPSYIVESAKNSTDD--------EDYPLDLTSAIEKLEIK 553 Query: 555 MIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 I +AL +K + A L I TLY K+ Y + Sbjct: 554 NITKALEMSKGNKAKAAKILNIPRTTLYYKLDLYGI 589 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 144/463 (31%), Positives = 239/463 (51%), Gaps = 30/463 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 Q D + ++ + +++ D+ V + L G + ++GK + Sbjct: 2 QRVTDILELELDAILKSSTDNIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEKE 61 Query: 206 ------------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLF 247 + T + + +I H++ + Sbjct: 62 NIFCPSVTARVLREKKEVQLMQQTTTGRVVMATGVPVFDQQNCIVRVISFSHDLTELERL 121 Query: 248 LMAFHQSHTSFSVANAP-DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + +E + +V + + M ++ +L+ R+A S ++V+ +GESG GK Sbjct: 122 KEDYEKLRKQMEHYQTEIEELKPQNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGK 181 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 V AR +H S RRN+PFI +NC+AIPE L ESE+FGY KG+FTGA GK GLI+ A+ Sbjct: 182 NVFARFLHLSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQ 241 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEIG++PL +QAKLL+ ++ ++++ +G VD R+I++TN+NL + + +G F Sbjct: 242 GTLFLDEIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIF 301 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DLFYRL+VIPI +P LRER+EDI +L YFL ++ P +V+ L + W Sbjct: 302 RQDLFYRLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMD-KYFHPSIVDHLVHYHW 360 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E LV + + I LP ++ + + + S Sbjct: 361 PGNVRELENMIERLV-ITSETKAIYPEYLPFSIQKHSKVAATPSLAEKRSEPS---TLKE 416 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 A+E++E+Q + A + + ++AD LGI T+ RK+KK+ + Sbjct: 417 AVEQVERQWLLRAAQQCKTTYEMADYLGISQPTVVRKLKKHRI 459 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 144/465 (30%), Positives = 231/465 (49%), Gaps = 41/465 (8%) Query: 149 LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN---------- 198 + + + ++ ++ VD + +V N+ A G+ Sbjct: 138 RKAEMELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNVKNNPFALC 197 Query: 199 ---------NIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM 249 +++ + ++ + E H Q K L L + G L + Sbjct: 198 PTDCCQACRDVLAETLKRKTAIREFQVECNHKQR---PQQKVSLSSAPLESQDGEFLGAV 254 Query: 250 AFHQSHTSF--SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 + T + ++G M+ + +L+ +A ++V++ GESGTGKE Sbjct: 255 LVIRDITRLVDLERELQERNQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKE 314 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VA+A+H R KPF+++NC+A+ E LLESELFG+VKGAFTGA + + G QAA+TG Sbjct: 315 LVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQ-GRFQAAHTG 373 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 TL LDEIGD+ +Q KLLR ++ RE +G PI+VD+R+I+ TNQ+L + + G+FR Sbjct: 374 TLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFR 433 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNV+ I LPPLRER+EDI LL +F ++ PG++ V+ + WP Sbjct: 434 EDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWP 493 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL + +E V+ ++I +P + + + + A Sbjct: 494 GNVRELEHSIERA-TVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAAD---------- 542 Query: 548 LEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 E I +AL R +K + A LG+ T+YRKI+KY + + Sbjct: 543 ----EPNEIIDALKRTGWNKAKAARLLGVSRKTIYRKIEKYGIQS 583 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 142/347 (40%), Positives = 213/347 (61%), Gaps = 12/347 (3%) Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 RQ ++ Q +F + + Q+VG + + + LI ++A S ++V+V GESG Sbjct: 117 RQALMVNHLQEEVTFLRSELNKKYG--QIVGNSQAIHDVCGLIEKVADSNATVLVTGESG 174 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+ A +IH+LS RR+KPF+ INCAA+PE LLESELFG+ KGAFTGA A K G + Sbjct: 175 TGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVAR-KLGRFEL 233 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 AN GTLFLDEI +MPL +Q KLLR ++ +E +G + I++D+R+I+ATN++ + I + Sbjct: 234 ANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRK 293 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYRLNV+PI LPPLRER EDI LL +F+ ++P+ + +L Sbjct: 294 GTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPEAMGLLIS 350 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E + ++ G I LP + + E + + Sbjct: 351 YEWPGNIRELQNVIERSI-ILAQGNEIKPHHLPKEIQKLDEVK----NETTHGLIINFPD 405 Query: 544 GGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 G + +E+EK++I +AL + + ++ + A LGI + L + +KY L Sbjct: 406 DGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRL 452 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 167/606 (27%), Positives = 271/606 (44%), Gaps = 93/606 (15%) Query: 14 QPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSG--NSRLLRHVLETKT 71 Q I+ F A ++ + E + +GR++ + L +L+T Sbjct: 28 QGIIKLFNEAAAKIMGVAKE----------------ETIGRRVEEVIPNTSLLEILKTGK 71 Query: 72 EKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLR 131 + + NC E P+ + VG I + Sbjct: 72 AE--NNQKMH--------LGNC-EIISNRGPICKDGKIVGAIGV---------------- 104 Query: 132 EFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK 191 + IS L + I+ +I+++ G++V + + N L+ Sbjct: 105 -----FQDISDFEALSL--ELDNVKEINNDLDAIIESVADGIVVGSADGMILRANSAYLQ 157 Query: 192 TLGVVQNNIIGKPIR-------FRPLTFESNFTHGHMQHIVSWDDKSEL----------- 233 G+ + +GK +R E F ++V EL Sbjct: 158 ITGIQEKEFVGKNVRELINQGYMNKSVTEMVFRTKSRVNVVDIRSGKELLMTGAPVFNEE 217 Query: 234 -----IIGQLHNIQGRQLFLMAFHQSHTSF-----SVANAPDEPHIEQLVGECRVMRQLK 283 ++ + +I Q+ + + + + ++++ + M++ Sbjct: 218 KEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAFKKIITKNNDMQKKL 277 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 +A S+V+++GESG GKE++A+ IH+ S R KPFI INC AIP LLESE FG Sbjct: 278 DTAYHVARVDSTVLILGESGVGKELIAQLIHRASHRSEKPFIKINCGAIPANLLESEFFG 337 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y G+FTGA GK GL + A+ GTLFLDE+G++PL Q K+LRAI+ +EIL +G I Sbjct: 338 YEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLRAIQEKEILRVGGKKTI 397 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 ++DIRII+ATN++L I E FREDL+YRLNV+P+T+PPLR+R+ED+ + L + Sbjct: 398 KLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQRKEDVIPIALELLARYN 457 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 G I P+V++ L + WPGN+REL N +E LV + + Sbjct: 458 TAYGYQ-KWIHPEVMDCLLNYDWPGNIRELENTIERLVVTSMDDCITKDAM--------A 508 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRK 583 + DV SL LE+ E +++ EA S ++ A LGI +++ +K Sbjct: 509 EIKYIDVHPAPNGLTSLKAF----LEKEENRLLEEAYRLMGSTRKAAAVLGISQSSMVKK 564 Query: 584 IKKYEL 589 +KKY + Sbjct: 565 MKKYGI 570 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 19/134 (14%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNFT 217 + D++ GV+ +D + ++ N+ A K +GV + IG+ + + Sbjct: 14 IFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTSLLEILKTGKAE 73 Query: 218 HGHMQHI-----------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 + H+ + D K IG +I + + + +A E Sbjct: 74 NNQKMHLGNCEIISNRGPICKDGKIVGAIGVFQDISDFEALSLELDNVKEINNDLDAIIE 133 Query: 267 PHIEQL-VGECRVM 279 + + VG M Sbjct: 134 SVADGIVVGSADGM 147 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 151/462 (32%), Positives = 239/462 (51%), Gaps = 30/462 (6%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 ++L Q + ++ T+I+++D G++ VD+ V +N+ A + L + Sbjct: 179 LSRQMLTIQRMEEANARRIETIINSVDYGIIAVDNAGAVTALNREARRLLALAHGAPDNH 238 Query: 204 PIRFRPLTFESNFTHGHMQHIVSWDDKSELII------------GQLHNIQGRQLFLMAF 251 P+ + L + +D EL+I G + +Q + F Sbjct: 239 PLLVK-LRRHGQLGERLTGSVERLEDGRELVINYLPITIGGETAGAVATLQELRQFQDIE 297 Query: 252 HQSHTSFSVANAPDEPHIEQLV-GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 ++ + +L MR + R A +++++ GE+G GKE A Sbjct: 298 RRTRQELARRGRLARHTFLELEETAAPAMRAVIDEARRFAAVDATILIQGETGVGKEYFA 357 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 AIH S RR PF+A+NCAAIP +LESELFGY +GAFTGA GK GL + A+ GT+F Sbjct: 358 HAIHAASPRRYGPFVAVNCAAIPATVLESELFGYAEGAFTGAKKGGKVGLFEQAHGGTIF 417 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG+M LQA+LLR ++ EI IG I VDIR+I+ATN++L +A G+FREDL Sbjct: 418 LDEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPVDIRVIAATNRDLRAMVAAGRFREDL 477 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRL+V+ + +PPLR R++DI L V F+ + GI + + +L + WPGN+ Sbjct: 478 YYRLDVLALEVPPLRARKQDIPLFVRKFIDEFNHKYRRAVQGIDDEGLALLAAYDWPGNV 537 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N+++ L+ + G VI +T + L + +A + Sbjct: 538 RELHNVVDRLMALAA-GPVITATEVRQCLERRLRSSDRPAAPGMKAAEAAA--------- 587 Query: 551 MEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 IR+AL+R + +K+Q A LGIG +TL+RK+++ + + Sbjct: 588 -----IRDALARANGNKQQAARLLGIGRSTLWRKLRELGIAD 624 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 158/456 (34%), Positives = 251/456 (55%), Gaps = 39/456 (8%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--------------FRPL 210 +IDN +G +VV+ + V F++ L T+ + + + IGK I +P+ Sbjct: 21 LIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGKPI 80 Query: 211 TFESNFTHGHMQHIVSWD--DKSELIIGQL-----HNIQGRQLFLMAFHQSHTSFSVANA 263 +++ T G +V + + + +IG + +I + Q Sbjct: 81 SYDYWETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYRQ 140 Query: 264 ------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + ++GE ++++K++ +IA S S+V++ GESGTGKE+ A+AIH S Sbjct: 141 ELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNAS 200 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R PF+ INCAA+PE LLE+ELFGY +GAFTGA GK G + A GT+FLDEIG++ Sbjct: 201 YRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGEL 260 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL +Q+KLL ++ REI +G + VD R+I+ATN+NL + EG FR+DL+YRLNVI Sbjct: 261 PLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNVI 320 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 + +P LRERQ+DI LLV+YF +L + + +L KH WPGN+REL N + Sbjct: 321 SLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNTL 380 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E V ++ +I LP ++ + L+LD+ +++ EK++I Sbjct: 381 ER-VFILSDDNIISVNHLPFSIKMRK------GNIIQSKRLTLDE----MIDQTEKRIIL 429 Query: 558 EALSR-HNSKKQVADELGIGIATLYRKIKKYELLNT 592 + LS + + A+ LGI +++LYRK+KK+ + + Sbjct: 430 DTLSNVKDDRIAAAELLGIHLSSLYRKMKKHGIKKS 465 >UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-binding response regulator n=1 Tax=uncultured bacterium RepID=C5JBC1_9BACT Length = 584 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 143/460 (31%), Positives = 238/460 (51%), Gaps = 24/460 (5%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-----------I 200 Q + + +D ++ +D+E R+ +N A K L + ++ + Sbjct: 124 QNEKKMLVNRMEAVFQGVDDAIVAMDNEWRIIQINDAACKLLKLNHSSMNQSFQNEISWL 183 Query: 201 IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIG--------QLHNIQGRQLFLMAFH 252 K E + I ++ E I+ + N QG + L+ Sbjct: 184 FHKVEPLLRQAQEEWLGKRAVCMISMHENGMERILNCTASLFHDPIQNAQG--IILVVRD 241 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 +S + LVG M+++ LI R+A S+V++ GE+GTGKE+VARA Sbjct: 242 ESRLAMLERETQTRQGWHGLVGSSLPMQEVYELIERLAEVDSTVLITGETGTGKELVARA 301 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 +H +S R F+A+NCAA+P L+ESELFG+V+GAFT A + K G + A+ GT+FLD Sbjct: 302 LHAISPRSQHSFVAVNCAALPVGLMESELFGHVRGAFTNAVRD-KPGRFKMADGGTIFLD 360 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGD+PL +Q +LLR ++ + +G ++PIQV++R+++AT++NL + + EG FREDL+Y Sbjct: 361 EIGDLPLDMQVRLLRVLQEQTFEAVGDNNPIQVNVRVVAATHRNLRERVQEGLFREDLYY 420 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RL V+ + LP LRE + D+ +L+ +FL R+ GI +V+ + +H WPGN+RE Sbjct: 421 RLKVVEMRLPSLREHKTDLPMLIDHFLKKFNARMKRSIKGITDEVLTAIMEHDWPGNVRE 480 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L + +E+ + V P ++ + LP + N + + S G + + Sbjct: 481 LEHTLEHAMVVAPQS-ILAWSNLPHDFRNRYFPVMKLLQQPSHQRGRPLKNGHPSGRGPD 539 Query: 553 KQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYELLN 591 ++ I + L + Q A L I +TL+R++K L N Sbjct: 540 RETILQTLEDSRWQLQIAATRLQISRSTLWRRMKSMGLNN 579 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 156/384 (40%), Positives = 225/384 (58%), Gaps = 14/384 (3%) Query: 210 LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQS---HTSFSVANAPDE 266 L + +V + G +H + MA + + S + Sbjct: 63 LVLTRVILGPVEKFVVEAESLGVTKTGGVHGDSPKAKDEMARYTTVFRQVSEVLNRIEAR 122 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 ++V + + MRQ+ I R+AP+ S+V++ GESGTGKE+VA +IH+ S R + F+ Sbjct: 123 KLFPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVK 182 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIP+ LLESELFGY KGAFTGA+A K G + AN GT+FLDEIGDMPL QAK+L Sbjct: 183 INCAAIPDTLLESELFGYEKGAFTGAAAR-KPGKFEQANGGTVFLDEIGDMPLETQAKIL 241 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E +E+ +G PI VD+R+++ATN+N+ + +A+G FREDLF+RLNV PI LPPLRE Sbjct: 242 RVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRE 301 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R EDI L+ F+ ++ I+P + IL H+WPGN+REL N +E +++ Sbjct: 302 RPEDIPFLIEEFMKFSSKE-----STISPPAMHILCAHQWPGNVRELRNAVES--SLLFG 354 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS- 565 EV++ LPP L + +S SLD L+E+EK ++ EAL R + Sbjct: 355 KEVVEPEHLPPALAGSMAVPTPAGVLISGEDESLD--LDFRLQELEKGILVEALKRSDGV 412 Query: 566 KKQVADELGIGIATLYRKIKKYEL 589 + Q A LGI +L+ ++KKY + Sbjct: 413 QAQAARLLGIKERSLWHRVKKYGI 436 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 157/458 (34%), Positives = 240/458 (52%), Gaps = 34/458 (7%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE-- 213 + +++ +G+L +D ++ VN +A K L + +I G + P E Sbjct: 197 QEKTSRIHVLLNASKEGLLSIDSLRYIRMVNHSARKILHIS-ESITGMKVMDAPFPREFK 255 Query: 214 ----------------SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 + ++ V + + I+ NI + S Sbjct: 256 KLLLEDTACTNEIFKYGDMMLNVTKYPVMVQNSNMGIVVSFQNISDIMDLENDIRRKIHS 315 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + H + +VGE +R + + + + S+++++G+SGTGKE+ A++IH S Sbjct: 316 ---KGHVAKAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQSGTGKELFAQSIHNHS 372 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++ PF+A+NCAAIPE LLESELFGY GAFTGA GK G + A+ GTLFLDEIG++ Sbjct: 373 MRKDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQKGGKPGYFELAHNGTLFLDEIGEI 432 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL QAKLLRAI+ REI+ +G+ I V+IRII+ATN+NL Q + EG+FREDLFYRL+V+ Sbjct: 433 PLKFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATNRNLEQLVREGEFREDLFYRLDVL 492 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 I +P L R+EDI LL +L H ++ D +L + W GN+R+L N+ Sbjct: 493 RIEIPFLENRREDIPLLARGWLLKHA-----PGTELSDDACRLLSQAEWNGNIRQLFNIC 547 Query: 498 EYLVNVVPSGEVIDSTL----LPPNLLNNGTTEQSDVTEVS-EAHLSLDDAGGTALEEME 552 E L +V+ SG +I LP G+ E S A + ++ E Sbjct: 548 ERL-SVLCSGSLIAGKDVRNVLPTLPQEPGSPALPLPAEPSLPPAAPFRSAEEDSPKDSE 606 Query: 553 KQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 ++ I +AL S+ + A LGI +TL+RK+K++ L Sbjct: 607 RETILKALEICRYSRSRAAALLGISRSTLWRKMKEFNL 644 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 139/337 (41%), Positives = 202/337 (59%), Gaps = 4/337 (1%) Query: 254 SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 + + + + ++G M+ + + ++ + S+++++GESGTGKE+VA+AI Sbjct: 138 AENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAI 197 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H RR KPF+AINC AIP +LLESELFG+V+GAFTGA A+ KTG Q A+ GT+FLDE Sbjct: 198 HYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVAD-KTGKFQQAHQGTIFLDE 256 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG MPL LQ KLLR ++ +E+ +G+S I++D+R+ISATN NL + + +G+FR DL+YR Sbjct: 257 IGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYR 316 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNVIPI LPPLRER+EDI LL YFL + I P + L + WPGN+REL Sbjct: 317 LNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVREL 376 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 N++E V + S I + LP N+ + ++ S D + +E+ Sbjct: 377 ENVIERTVTLTDS-IAIGKSDLPANISGSCCEDEDPQISCPRLTESGMD-MPEVIAGIER 434 Query: 554 QMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 +I+ A+ K + A L I TL KIK+ + Sbjct: 435 CLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 171/559 (30%), Positives = 269/559 (48%), Gaps = 67/559 (11%) Query: 58 GNSRLLRHV---LETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVIS 114 + +HV + +V Q+ + D +N E + + + L D C ++ Sbjct: 41 KEGFIGKHVADVIPNTRLHIVVQTGVPEV----DEVQNVGENIIITSRMPLTDECGNILG 96 Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 +AV R I+++ KL E+ I +ID+ + Sbjct: 97 AVAV------------------FRDITSM--RKLAEEITNLHQIEARLKAIIDSTYDAIS 136 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDD----- 229 V D+ + VN+ K G+ +IGKP ES ++ Sbjct: 137 VADENGYIVLVNKAYTKITGLKPEEVIGKPATVDIAEGESIHMKVARTKKPIFNARLKVG 196 Query: 230 --KSELIIGQLHNI-------------QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVG 274 K E+I+ + I ++ + + + + + ++G Sbjct: 197 PLKREVIVNAMPLIVRGKFSGSVAVVHDVSEILELTRELNEVKRYIRQLKAQYTFDDIIG 256 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 + + K ++A +P++V + GESGTGKE+ A AIH S R+N PF+ +NCAAIPE Sbjct: 257 KSEKLLIAKEQAKKVAKTPATVFLRGESGTGKELFAHAIHNESNRKNNPFVTVNCAAIPE 316 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 +LE ELFGY K F G+ GLI+ A GTLFLDEIG MP+ +QAK+LR IE RE Sbjct: 317 NMLEIELFGYTKDTF------GQKGLIEEAEGGTLFLDEIGKMPISVQAKILRFIENREF 370 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 LPIG++ +V++RII++TN N+ + I + +F DL+YRLNV PI +PPLRER+EDIE L Sbjct: 371 LPIGSNRVKKVNVRIIASTNMNIEELIRKEQFLIDLYYRLNVFPIYIPPLRERKEDIEEL 430 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI-DST 513 + R+ G I + VE L+K+ WPGN+REL N++ + + GE I D Sbjct: 431 AKFLAKKIGRQYGRNVVDITDNAVEYLKKYDWPGNIRELENIIGRAIINMDIGETILDKR 490 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADE 572 +P L N + L + + + +E+ E++MI +L +N + A + Sbjct: 491 HIPLLFLENNSI------------LKKEGSLRSMVEDFERKMIESSLKENNGDRTLTAKK 538 Query: 573 LGIGIATLYRKIKKYELLN 591 L I + TLY K+++Y LL Sbjct: 539 LKISLRTLYYKMERYGLLK 557 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFESN 215 + K + T+++++ +GV++VD + ++ ++N+ A+ L + + IGK + P T Sbjct: 2 ELMKFYRTVLESIIEGVIIVDKDAKILYINKRAMHILKLKEG-FIGKHVADVIPNTRLHI 60 Query: 216 FTHGHMQHIVSWDDKSELII 235 + + + E II Sbjct: 61 VVQTGVPEVDEVQNVGENII 80 >UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2X5_DESRD Length = 525 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 152/506 (30%), Positives = 249/506 (49%), Gaps = 26/506 (5%) Query: 104 ILQDRCVGVISLIAVTHEQQ-----EHISDNLREFSDYVRHISTI--FVSKLLEDQGPGD 156 +L + + ++S+ + E +++L D +R + I + P + Sbjct: 21 MLGEDSINILSMEVDASGDRTFVYFETQAEDLCSSDDLMRRLKEIPGLLEISTIRTMPQE 80 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 + +++++ G++ +D+ R+ N+ A G IIG+PI+ L S Sbjct: 81 KRERSLEVILNSVSDGIVAIDEHRRIIVANRVARNIFGCKDPEIIGRPIQALNLPDLSML 140 Query: 217 THGHMQHIVSWDDKSELIIGQLH-------------NIQGRQLFLMAFHQSHTSFSVANA 263 + + K + G H I G + + + Sbjct: 141 ECLRGKRYHNVPRKCQTPAGLFHFFASAQPFKDSNGRIVGAVEVMKDMKEIKQLANFVAD 200 Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 P E ++G+ + ++A S + + + GESGTGKE+ A+AIH SG + Sbjct: 201 PARITFEDIIGKSPAITSAIAFAKQVARSNAVISIRGESGTGKELFAQAIHHASG-LSGL 259 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+ INCA +PEQLLESELFGY G+FTGA GK GL + A GT+FLDEI +MP QA Sbjct: 260 FLPINCATLPEQLLESELFGYEGGSFTGADKQGKVGLFEKAKDGTIFLDEIAEMPPNCQA 319 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR I+ R + IG S+ I ++ RI++AT++NL + + FR+DL+YR+NV+PI LP Sbjct: 320 KLLRVIQERRVRRIGGSAEIPINARIVTATSKNLESMVRDNLFRDDLYYRINVLPIYLPA 379 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER EDI LL +FL +L + + +E L H WPGN+REL N++E + Sbjct: 380 LRERLEDIPLLAEHFLFQLNYKLNKGHQLLTKGALEKLSGHAWPGNIRELRNVIERAAIL 439 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + ++ +L + + V D L+ +E++++++AL R Sbjct: 440 GGANQISQECILFSFEVGQRQEDPGGVYPSCSVEGLRDQ-----LDSLERKLLQQALDRT 494 Query: 564 NSKKQVADELGIGIATLYRKIKKYEL 589 S +Q A +L I + L K++K++L Sbjct: 495 ASIRQAARQLRISHSALLNKMRKHKL 520 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 246/472 (52%), Gaps = 38/472 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 +++ + ++K T+I+ G+++V + R++ VN + L +G + ++IGK Sbjct: 413 LINEKRSELKEIQILNKEMDTLINFSCDGLVMVSKDGRIERVNHSYLNMVGFKRQDLIGK 472 Query: 204 ------------------------PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 I T + + + + E ++ + Sbjct: 473 RVEELEKERYIYPSVASLALKEKRNITLVENTSDKKRLLATANPVFNENGDLEWVVVNVR 532 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAP----DEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 N+ + + E + ++ M+ + +IA + S+ Sbjct: 533 NLDLINDEKDKEKEKLKKYLDNAPQLDNNPEGNTGHIIVSSDEMKNILMTCRKIAGTDST 592 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V++ GESG GKEVVAR IH+ S R + F+ INCAAIPE LLESELFGY GAF+GA Sbjct: 593 VLITGESGVGKEVVARYIHEQSPGRQE-FVKINCAAIPESLLESELFGYETGAFSGAKRA 651 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 GK GLI+ A+ GTLFLDEIG+MPL +QAKLL+ ++ R++ IG P+++D R+I+ATN+ Sbjct: 652 GKPGLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAATNR 711 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 +L Q + + FR+DLFYRLNV+P+ +PPLR+R EDI L+ YFL + + + Sbjct: 712 DLRQMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIK-LTR 770 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 D E+L + WPGN+REL+NL+E LV V +D ++ + + + E Sbjct: 771 DAEELLLSYSWPGNVRELTNLIERLV-VTCEESFVDRNIIIEYI-------DNPEVKTPE 822 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 ++ A+ +EK+++ A S+ NS +A LG+ +T+ RK+ KY Sbjct: 823 ILINKIMPLPEAVARVEKKLLSMARSKGNSTYDMAKLLGVNQSTVVRKLHKY 874 >UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHA0_MOOTA Length = 752 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 145/319 (45%), Positives = 203/319 (63%), Gaps = 8/319 (2%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++ M ++ L R+A S+V+++GESG GKEVVAR IH LS R PF+ INC Sbjct: 439 NIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARLIHALSERGKGPFVKINCG 498 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGY +GAFTGA+ GK G ++ GT+FLDEI ++PL LQ KLL+ ++ Sbjct: 499 AIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQ 558 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 + ++ +G I+++IRIISATN+NL Q + EG FREDL+YRLNVIP+T+PPLRER ED Sbjct: 559 EQRLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPED 618 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 IE L+ +F+ RR I+ L + WPGN+REL N++E L +V G I Sbjct: 619 IEALIDHFMDRLNRRY-KQEKRISRRARRYLLAYPWPGNVRELHNVIEQLFVLV-EGTEI 676 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 LP + ++ S + + A+EE+EKQ++ +AL ++ S QVA Sbjct: 677 LPEHLPYYIRDDPARYSSHMLVKDIIPM------KEAIEEVEKQLLLKALEKYRSTYQVA 730 Query: 571 DELGIGIATLYRKIKKYEL 589 ++LG+ +T+ RKIKKY L Sbjct: 731 EKLGVNQSTVVRKIKKYGL 749 >UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRZ0_DESMR Length = 523 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 153/452 (33%), Positives = 233/452 (51%), Gaps = 18/452 (3%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL 210 + P + + + T++DN+D+ V+ +D V +N A + + + +G+ +R PL Sbjct: 76 EAMPHEKQANLLRTVLDNVDESVVAIDASGCVTLINNVARENFKCGRADPVGRHVRELPL 135 Query: 211 TFESNFTH-------------GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 + + + + I+ + G + Sbjct: 136 PDHAILGCLEGRRYNNVRKNVTVGRKRLQYFATGRPILDAEGGVTGAVEIAKDAQEIRDL 195 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 P + ++G MRQ+ + +IA S + V + GESGTGK+++A+A+H S Sbjct: 196 AKSIYEPADVGFSDIIGASAAMRQVVAMAEKIASSEAIVTIRGESGTGKDMLAQAMHAAS 255 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 G + F+AINCAA+PE L+ESELFGYV GAF+GA GK GL + A GT+F DEI +M Sbjct: 256 GLPGQ-FVAINCAAVPETLMESELFGYVGGAFSGARREGKPGLFELAKDGTVFFDEIAEM 314 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL QAK+LR I+ + +G S Q + RII+ATN+NL QF+ +G FREDL+YR+NV+ Sbjct: 315 PLAAQAKILRLIQNGRLRRLGDSRETQANARIITATNRNLEQFVEKGLFREDLYYRINVL 374 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 P+ +PPLRER EDI L +FL + RLG G P + L +H WPGN+REL N++ Sbjct: 375 PLHIPPLRERPEDICALADHFLFQLSARLGKELTGFDPAARDKLVRHGWPGNVRELKNVV 434 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E + + + +L + L LSL A+E E+ ++ Sbjct: 435 ERAAILCDQPVIGERHVLLVHELGRDPLAGGGAVSDVGGRLSLR----AAMERYERDLLE 490 Query: 558 EALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 AL S +Q A ELG+ L +K+KK+ L Sbjct: 491 SALKGRKSLRQAARELGLSHTALLQKVKKHRL 522 >UniRef50_B6WWU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWU2_9DELT Length = 567 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 175/517 (33%), Positives = 270/517 (52%), Gaps = 43/517 (8%) Query: 98 FLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIF-VSKLLEDQGPGD 156 L P +L+ R I L + +I D+ + D V +S I V K+ ED Sbjct: 51 ELSLPKVLEARDATEIKLRKLNIADHTYIIDSFFDGEDLVILLSDITDVKKMAEDLSQQF 110 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL---TFE 213 F + + G++V D RV F+N T + + ++ L F Sbjct: 111 THLLRFKMSMQCITDGIVVADAFERVVFMNATMHDIISSQHKKYDVRTLKDLELLLGIFS 170 Query: 214 SNFTHGHMQHIVSWDDK--------------------SELIIGQLHNIQGRQLFLMAFHQ 253 N + D+K LI + + + + Sbjct: 171 ENEEGASLSESSYRDEKTGQTFLAEKRKLMISGERLHGFLIYFSAVSAEEGKPLKNSLKT 230 Query: 254 SHTSFSVANAP--------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 + T S P ++P I+ VG+ + + ++K +I ++APS S+V++ ESGTG Sbjct: 231 AQTPLSELRYPPAGNRKGAEKPSIQSFVGQSKSVLRIKAIIKKVAPSSSTVLLQSESGTG 290 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE++AR++H+LS R + PFI +NCA++PE LLE+E+FGY GAFTGA +G GL + A+ Sbjct: 291 KELLARSLHELSERADGPFIKLNCASLPESLLEAEVFGYDSGAFTGAKKSGNPGLFEQAH 350 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 TGT+FLDE+G+M L LQAKLLR I+ RE+ IG S Q+D+RI++ATN++L Q + +G+ Sbjct: 351 TGTIFLDELGEMSLSLQAKLLRIIQEREVQRIGGQSSKQLDVRIVAATNRDLLQLVKQGR 410 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FR DL +RLNV+ IT+PPLRER+EDI+ L+ YFL L+++ G++ +V + + Sbjct: 411 FRSDLLFRLNVVSITIPPLRERKEDIKSLIIYFLRLYSQIFKKNISGVSKEVYYLFMNYD 470 Query: 486 WPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG 545 WPGN+RELSN++EY N++ G +I+S LP LL+ T + + + D A Sbjct: 471 WPGNVRELSNIIEYAFNII-DGNIIESRHLPQYLLDASTYPSGGSRTLDD--MMADYAFK 527 Query: 546 TALEEMEKQMIREALSRHNSKKQVADELGIGIATLYR 582 ++ +E +K A LGI A LYR Sbjct: 528 AVMDSLE--------QHKGNKALAALSLGISRAKLYR 556 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 145/446 (32%), Positives = 239/446 (53%), Gaps = 28/446 (6%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN-NIIGKPIRFRPLTFESN- 215 SK+ +T+++ ++ V +Q +N A +T + + G+P+ + Sbjct: 206 RSKMTSTILNTSSDALIAVSGSGLIQALNNQAYRTFQLSSQADYTGRPVEEVCPALKWKD 265 Query: 216 --FTHGHMQHIVSWDDKSELI-----------IGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 T + ++ W D+ G + + + + A + S + Sbjct: 266 VVETGREREEVIQWKDRKLYTEYRPVLVDKMGKGAIIVARYTEQIIEAETKIRQSLAKQG 325 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + + ++G +R+ + R + S+V++VGE+GTGKE+ A +IH+ S R + Sbjct: 326 LTAKYSFDDIIGSSPAIRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIHRESRRSAE 385 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+A+NCAA+PE LLESELFGY GAF+GAS NGKTGL + A+ GT+FLDEIG++P+ LQ Sbjct: 386 PFVALNCAALPENLLESELFGYEPGAFSGASKNGKTGLFELAHKGTIFLDEIGEIPISLQ 445 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ REI IG++ VD+R+ISATN N+ + I EG+FR DL+YRLN++ IT+P Sbjct: 446 AKLLRVLQEREIRRIGSNRVQPVDVRVISATNINIEEKIQEGQFRADLYYRLNLLDITIP 505 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER +DI +V ++L +G P ++ + V+++ + WPGN+REL N+ E L+ Sbjct: 506 PLRERGDDIREMVDFYLTRFACEMGKPIPRLSKEAVDLMTHYGWPGNVRELRNICERLIV 565 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + + E+ + + E L ++ E ++ L Sbjct: 566 LSDTTEI-----------GLREIQMLKIFRKKEGPLPGTQTPDKETDQPETGIVYANLKP 614 Query: 563 HNSKKQVADELGIGIATLYR--KIKK 586 K+ +A ELG+ TL+R K+ + Sbjct: 615 RKKKQDIAKELGVSRTTLWRMEKMAR 640 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 176/618 (28%), Positives = 282/618 (45%), Gaps = 56/618 (9%) Query: 2 ELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFL--------- 52 +LA +L + Q L L V I + + G Y + Sbjct: 94 KLAPETRLLCDLVTEAQPHINNLIRKRGLIVTISNPQGYLINMFGDYRALICAEKLNFGP 153 Query: 53 GRQLSGNS---RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRC 109 G S S + L + V+ + CEG ++++ + + D Sbjct: 154 GANWSEASVGTNAIGTALASGVALTVS--GLEHFCEG--------HQSWICSAAPIFDLS 203 Query: 110 VGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGP--GDNISKIFATMID 167 +I + N+ + + I S+LL+ Q + + + Sbjct: 204 GTMIG--CIDISGPTTSIHNIP--LPLAINGARIIESQLLKKQANELKQQSVNLVTSAFN 259 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF-------RPLTFESNFTHGH 220 + G++V+D ++ VN TA L + Q ++IG + +S H Sbjct: 260 AVATGMMVLDPNGIIKTVNPTAAVLLNMSQESLIGCSAQICFEIETALERLKKSPEIHAT 319 Query: 221 MQHIVSWDDKSE-----LIIGQLHNIQGRQLFLMAFHQS--HTSFSVANAPDEPHIEQLV 273 M V W ++ I + G L ++ Q+ H + + +P ++ Sbjct: 320 MGVTVKWKQRASANARVYPITTPNGSLGCLLLVLYESQNRPHMALPMETKTHDP-FNAVI 378 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G + ++AP +S+++ GESGTGKE++A+A+H+ S R KPF+AINC AIP Sbjct: 379 GVSSAILSAVETAKQVAPQMTSILITGESGTGKEIMAKALHRASPRAQKPFVAINCGAIP 438 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +L++SELFGY +GAFTGA+ G G + AN GTLFLDEI +MPL LQ LLR +E Sbjct: 439 HELIQSELFGYAQGAFTGANRGGNPGKFEQANEGTLFLDEIAEMPLDLQVNLLRVLEENS 498 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + +G + PI VD+RI+SAT++NL + I + FREDL+YRL V+ I LPPLR+R D++L Sbjct: 499 VTRVGGNHPIPVDVRILSATSKNLKELILQKTFREDLYYRLKVVKIDLPPLRQRGRDMDL 558 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L +F++ ++ L + P L H WPGN+REL + +E + ++ + Sbjct: 559 LAEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGNVRELKHAIEGAIALMSGDTL---- 614 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADE 572 G + E LS+ D L +EK+ I+ A +R + A Sbjct: 615 --------FGDALCDSPGNLQETALSVPDKERLNLMRVEKETIQLAYARFSGNISHTAKA 666 Query: 573 LGIGIATLYRKIKKYELL 590 LGIG TLY K+ KY++ Sbjct: 667 LGIGRNTLYAKLLKYKIT 684 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 155/565 (27%), Positives = 275/565 (48%), Gaps = 51/565 (9%) Query: 53 GRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL---QDRC 109 + G SR + + R L N R + + + Sbjct: 117 NNYVPGCSRAEEVAGTNAISLALIEKRPVQLTGAEHW--NVRHHLWTCAAAPVFSPEGML 174 Query: 110 VGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK--IFATMID 167 +G ++L T H + ++ +R +L E + + + A+++ Sbjct: 175 LGAVTLSGETTRAHRHTLGMVISAAEAIRE-------RLREREMAEEKRGSDVLLASVLG 227 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP-IRFRP----------------- 209 ++ + ++++D V +N A K+L V I GKP +R P Sbjct: 228 SISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQGKPFVRLFPSQPELAQLLPVRGDNAA 287 Query: 210 --LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 ++ E GH +E + G + ++ R+ FL + + Sbjct: 288 FEVSSERPGGRGHFVITPYVMYANEAVTGAILALRERREFLNEVRE------FSGFNAVF 341 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++GE + + L A + ++++GE+GTGKE+ A++IH S RR+ PF+A+ Sbjct: 342 TFDDILGESPALLRQIELARTAARQNTRILILGETGTGKELFAQSIHNCSPRRSGPFVAL 401 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP +L+ESE+FGY GAFTGA G+ G ++ A+ GT+FLDEI MPL LQ+KLLR Sbjct: 402 NCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLELADGGTIFLDEINQMPLDLQSKLLR 461 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 A++ I +G + PI++D+R+I+A N++L G+FR+DL+YRL+V+ + LPPLRER Sbjct: 462 ALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQDLYYRLSVVELALPPLRER 521 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI L+ + L ++ ++P +E+LR++ WPGN+REL N++E + ++ G Sbjct: 522 GDDIALIARHLLDTLGEKIDKPALSLSPPAIELLRQYPWPGNVRELENVLE-MGAIMAEG 580 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK 567 +I L + + T E+ S ++ ++ +IR A+ N Sbjct: 581 SIIKPGHLAYRMRDRRTPERQHAAASSR---------DQSIPAIQLDLIRSAIEEFNGNV 631 Query: 568 Q-VADELGIGIATLYRKIKKYELLN 591 V +LG+ AT+YR+++++ ++ Sbjct: 632 DLVGRKLGLSRATVYRRMQQHGIVK 656 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 154/373 (41%), Positives = 217/373 (58%), Gaps = 10/373 (2%) Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECR 277 +G +I D EL I +Q R + A + I+ LVG+ Sbjct: 95 NGAYDYIAKPFDIDELDITVSKALQFRDIL------KDNQRMRAELAEHQQIDSLVGDSP 148 Query: 278 VMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLL 337 R++ + + + S +++++ GESGTGKE+VARAIHK R +KPF+A+NCAAIPE LL Sbjct: 149 AFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLL 208 Query: 338 ESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPI 397 ESE+FG+ KGAFTGA A+ + G Q A+ GTLFLDE+GDMPL LQAK+LRA++ R I P+ Sbjct: 209 ESEMFGHRKGAFTGAVAD-RVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPV 267 Query: 398 GASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHY 457 G +VD+R+I+ATN+NL + +A +FREDL+YRLNV PI LP LRER EDI LL + Sbjct: 268 GDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARH 327 Query: 458 FLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPP 517 F H G G +P+ ++ + + WPGN+REL N +E +V +G+VI+ LP Sbjct: 328 FAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVERA-TIVATGQVIEEKDLPG 386 Query: 518 NLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADEL-GIG 576 L +S D AL E+EK I AL + N + A +L GI Sbjct: 387 YLFGPQAQGTESSAAISVGPQVPSD-LEAALAEVEKAYILAALQQSNGVQAAAAQLIGIS 445 Query: 577 IATLYRKIKKYEL 589 + + ++KK + Sbjct: 446 ERSFWYRLKKLGI 458 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 146/467 (31%), Positives = 236/467 (50%), Gaps = 40/467 (8%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR----- 208 +++ + T++D + GV++V E + VN+ G Q+ ++G+ Sbjct: 2 NSSDLNLYWKTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSSC 61 Query: 209 -------------------------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG 243 L + +++ D IIG + I Sbjct: 62 EIARNAEGCHWCVMFKHGRLRRQRCALIRKDGIPVQIVKNASVLKDGEGQIIGAVETITD 121 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + +A D ++G M+ L LI S + V++ GESG Sbjct: 122 ITDLTTKESLIASYRQELDAQDR--FYGMIGASAPMQALFELIRNAGQSDAPVIIFGESG 179 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 GKE++A+AIH+ R P+I +NCAA+ E LLESELFG+VKG+FTGA + + G +A Sbjct: 180 AGKELIAKAIHEAGSRSQFPYIKVNCAALNESLLESELFGHVKGSFTGAHRD-REGRFEA 238 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ G +FLDEIGD+PL Q KLLR +E + + +G PIQVD+RIISATN++L I++ Sbjct: 239 ADKGDIFLDEIGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISK 298 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G+FRED FYR+NVIP+ P LRER+ DI LL F + + G GI+ + ++ L Sbjct: 299 GEFREDFFYRINVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALAN 358 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL + +E+ V ++I+ LP + + D + Sbjct: 359 YNWPGNVRELKSALEFAF-VSCHEDLIEPRHLPAPI-----AAEPDCAPPQPVPVQSRGP 412 Query: 544 GGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYEL 589 GG L+++++ + +AL S ++ + A LGI +++ ++K+Y+L Sbjct: 413 GGATLDQVKRTRLIDALTSAKGNQSEAARILGISRTSVWAQVKRYQL 459 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 148/464 (31%), Positives = 231/464 (49%), Gaps = 40/464 (8%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESN 215 + ++D +D V +VD E RV N+ A + G+ +I+G+ I F P + Sbjct: 6 LQASLGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPSSLMVR 65 Query: 216 FTHGHMQHI-------------------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 Q + V D + I ++ Q+ Sbjct: 66 RVLESGQRVEWTYHQPRPGIYVLVSAAPVIRDGQVVGAIAVERDVTDLVELSNELLQARG 125 Query: 257 SFSVANAP----------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + G +R+ RL S +A + ++V++ GE+G GK Sbjct: 126 QVDALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATVLIRGETGAGK 185 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+ ARAIH+ S RR+ PF+ +NC AIP L ESELFGY GAFTGA+ G+ G ++ A+ Sbjct: 186 ELFARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGAFTGANPKGQRGKLELAHG 245 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDE+GD+PL Q KLLR +E R+ +G S+PI VD+R++ ATN++L + + +G++ Sbjct: 246 GTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRDLEELVRQGRY 305 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DL++RLNV + +PPLRER+EDI L+ FLH + R G + P V++ + +H W Sbjct: 306 RDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPAVIQAMMEHTW 365 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL + +E +V + P G V L+P L + Sbjct: 366 PGNVRELRSAVERMVILSPDGAV-GPELIPAILGPARRGAAAAGPAAPPCAPGAAPQD-- 422 Query: 547 ALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 E++ I AL+ ++ A LGI TLY ++++ L Sbjct: 423 -----EREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGL 461 >UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6Q8_9CLOT Length = 476 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 165/457 (36%), Positives = 248/457 (54%), Gaps = 42/457 (9%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-----------PIRFR 208 F +ID+M VL+ D++ + ++N + G +IGK I Sbjct: 19 SEFQRLIDSMYDEVLIYDNQYTIVYINDACSRHYGYQPEQMIGKSFFEFVDGNCWDISVL 78 Query: 209 PLTFESNFTHGHMQHIV--------------SWDDKSELIIGQLHNIQGRQLFLMAFHQS 254 P+ +E T+ Q S + + +I+ N+ G +LF + Sbjct: 79 PVIYEKKKTYAVKQKTKLGSELLTIAVPIFDSQKNLAYVIMNVRDNLSGVKLFNPDYIYR 138 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 +S S + P + + R M Q+ + RI+ + ++ GESGTGK +VAR IH Sbjct: 139 KSSLSYSTVP--------MCKSREMEQVIQFAERISQVDVTCILTGESGTGKTMVARYIH 190 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 +S R +PFI++NCA+IP +L+ESELFGY+KGAFTGA+ GK GL +AA+ GTL LDEI Sbjct: 191 SISPRNARPFISLNCASIPNELVESELFGYIKGAFTGANTQGKKGLFEAASGGTLLLDEI 250 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 ++ L QAKLL ++ E +PIG SSP++VD+RII+ATN+NL Q +A+G+FREDLFYRL Sbjct: 251 AELSLSTQAKLLHVLQDHEFIPIGGSSPVKVDVRIIAATNKNLRQMVADGQFREDLFYRL 310 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV+ I LPPLR+R+ DI L+ FL + + +E L + W GN+REL Sbjct: 311 NVVEIYLPPLRKRKADIPDLIQQFLKEFNEKYNLS-RSLDSHALETLVNYEWKGNVRELR 369 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 +++E LV V +G++I + LP N+ + T + + T ++ E+ Sbjct: 370 HMIERLV-VTVTGDLITTGHLPQNMTGSTDTGTAR-------EVPKITDYHTRMQNFEEA 421 Query: 555 MIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 MIREA + S +++A L I R I+KY L N Sbjct: 422 MIREAYQKCGSSRKMAAYLNISQTKANRLIQKYLLGN 458 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 137/397 (34%), Positives = 225/397 (56%), Gaps = 28/397 (7%) Query: 197 QNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 + +IG I L+ FT ++ + ++ ++ + I Q + Sbjct: 126 KERLIG-AIYLDSLSQRGRFTRDNLPFLEAFAHQAAIAIENAQLYQALREENRRLRSEIQ 184 Query: 257 SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 +++VG+ MR++ ++R+ + ++V++ GESGTGKE++ARAIH Sbjct: 185 RLH--------GFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYN 236 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R++KPF+ + C ++P++LLESELFGY KGAFTGA ++ K GL + A+ GT+FLDE+GD Sbjct: 237 SERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSD-KKGLFEVADGGTVFLDEVGD 295 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 + +Q LLR ++ EI +G + +VD+R+ISATN+ L + + +GKFREDL+YRLN Sbjct: 296 LSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNT 355 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 I IT+PPLR R+ DI LL H+FL + + + G P+ +E+L ++ WPGN+REL N Sbjct: 356 IQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENT 415 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E V V+ GE+I L + + D+ L+E+E++++ Sbjct: 416 IERAV-VLARGELITPEDLRLPDTDGADPFEPDLP----------------LKEVERRVV 458 Query: 557 REALSRHNSK-KQVADELGIGIATLYRKIKKYELLNT 592 L RH + A LG+ L+ K+K++++ N Sbjct: 459 LRTLKRHGGNISETARVLGVSRRWLHYKLKEWDVQNA 495 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 143/459 (31%), Positives = 226/459 (49%), Gaps = 42/459 (9%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE 213 + + ++ ++ V + RV +N L L + + G+ + +E Sbjct: 132 ELQRLRAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGEWE 191 Query: 214 SNFTHGHMQHIVS--------------------WDDKSELIIGQLHNIQGRQLFLMAFHQ 253 S + S ++ + + G+ + G L L + Sbjct: 192 SQLGDVLRHALESRQRVPRRRVNITVDEGASQVFEVSASPLRGETGDYLGAVLVLRDISR 251 Query: 254 SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 AP E LVG M+++ L+ +AP+ ++V+V GESGTGKE+VA A+ Sbjct: 252 LAACCPPGGAPGEWG---LVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEAL 308 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H R P I +NCAA+PE LLESELFG+V+GAFTGA + + G Q A+ GT+FLDE Sbjct: 309 HNAGPRATGPLIKVNCAALPETLLESELFGHVRGAFTGALRD-RVGRFQLAHGGTIFLDE 367 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IGD+ +Q +LLR ++ RE +G + +VD+R+I+AT++NL + +A G FREDL+YR Sbjct: 368 IGDLSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYR 427 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 L V+ + +PPLRER ED+ LL +F+ + ++ G L H WPGN+REL Sbjct: 428 LRVVELHMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVREL 487 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 + +E+ ++ GE ID LPP++ + Sbjct: 488 RHAVEHGF-ILCKGERIDLADLPPDVQGTEASVFPRAERSGVHEA--------------- 531 Query: 554 QMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 +REAL + +K + A LG+ TLYRK+ +Y + + Sbjct: 532 -AVREALKKAGGNKARAARLLGVARQTLYRKLAEYGIRD 569 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 148/465 (31%), Positives = 228/465 (49%), Gaps = 30/465 (6%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF 207 L E+ I + +I++ ++ + VVD++ R +N K G+ + +IIGKP Sbjct: 239 LAEEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATT 298 Query: 208 RPLTFESNFTHGHMQHI----------------------VSWDDKSELIIGQLHNIQGRQ 245 + ES V D + +G + ++ Q Sbjct: 299 DIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQ 358 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 +++ A + + +VG A +P++V++ GESGTG Sbjct: 359 KLTNELNRARQIIRTLEA--KYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTG 416 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE+ A AIH S R+ F+ +NCAAI E LLESELFGY +GAF+GA GK G + AN Sbjct: 417 KELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEAN 476 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 G++FLDEIG++ QAKLLR ++ +EI+ +G + I +++R+I+AT+ NL + I EGK Sbjct: 477 NGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGK 536 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FREDL+YRLN IPI +P LR+R+ DI + + + G G+ + L+ + Sbjct: 537 FREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAILYLQSYE 596 Query: 486 WPGNLRELSNLMEYLVNVVPSGEV-IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++ + + E ID LPP + L+ Sbjct: 597 WPGNVRELENILGRAIIFMNYNETYIDVHHLPPLHNEEQVESKQSHLLPELEEKPLEHL- 655 Query: 545 GTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYE 588 + E E +I E L R +K Q A LGI + LY K++KY+ Sbjct: 656 ---VTEFEGNIIHEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 697 Score = 59.4 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 70/197 (35%), Gaps = 16/197 (8%) Query: 108 RCVGVI-SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQG---PGDNISKIFA 163 + VI + + + ++ I+ I E +G + ++ Sbjct: 76 MHIDVIFDMTGEDDVHKVLLEKKKKDTLLIPGDIAKIVTGLAHEKEGLIGRLEEQTQQGE 135 Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ- 222 ++++ G++V+D E +V+ N++A + +G + IGK I T + Q Sbjct: 136 LILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRTKQI 195 Query: 223 ---HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH--------IEQ 271 + ++ ++ ++I ++ ++ AF V + +E +E Sbjct: 196 EVNYELTLENGKKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEVTDLKEIQTLLEA 255 Query: 272 LVGECRVMRQLKRLISR 288 ++ + R Sbjct: 256 IINSSEEAISVVDEKGR 272 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 220/365 (60%), Gaps = 17/365 (4%) Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP---HIEQLVGECRVMRQLK 283 + + I+ L + + A + T V L+ + MR++ Sbjct: 95 REGAYDFIVKPLDTARLKVCIDRALEKKETMREVQTLRRRLKQLGSSDLIAQSVGMRKVI 154 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 L+ ++APS +SV + GESGTGKEVV+RA+H LS RR+KPFIAINCA+IP L+ESELFG Sbjct: 155 ELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIESELFG 214 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 + +GAFTGA + G+ + A+ GTLFLDE+G++P+ LQAKLLR +E ++ +G I Sbjct: 215 HERGAFTGAD-QRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEI 273 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 +VD+R++ ATN++L Q I G+FREDL++RLNV I LPPLRER++D+ +LV +F+ Sbjct: 274 EVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFR 333 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 G G+ P+ +E+L+ + WPGN+REL N +E V ++ GE+I LPP++ Sbjct: 334 GDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAV-ILCDGELITREHLPPDMAGK- 391 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYR 582 S + G +L+ +E++ I +L R+ + K + A+ LG+ TLY Sbjct: 392 ----------SPERHTFRLPFGLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYN 441 Query: 583 KIKKY 587 K+ +Y Sbjct: 442 KLNRY 446 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 159/516 (30%), Positives = 253/516 (49%), Gaps = 43/516 (8%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 P+ + +G S + ++ + N+ +R IS +L+ +++ Sbjct: 189 PLPVNKLVIGDRSFLPYRNDVVQD--GNVIGSVLVLREISEF--EELVRQSQYTQKLNRE 244 Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----------------- 204 + ++ G+ V D + +N+ + GV +G+ Sbjct: 245 LDAIFESSFDGLYVTDGQAITLRLNKGFERITGVTAAECVGRHMADLVKEGKFSRSGTLL 304 Query: 205 -------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 + + N I + L++ + +I Q Sbjct: 305 ALEKKERVTISLVAATGNEVLVTSNPIFDEEGNIILVVTNVRDITELNELQRKLEQVEGL 364 Query: 258 FSVANAP-DEPHIE---QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 + + ++ ++ QLV M++L L+ R+ S++++ GESG GKE++A I Sbjct: 365 TQLYRSQLEQIKLQTSRQLVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKELIAEII 424 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H S R++ P I +NC AIPE LLESELFGY GAFTGAS +GK GL + A G LFLDE Sbjct: 425 HSSSNRKDGPLIKVNCGAIPENLLESELFGYEAGAFTGASKSGKIGLFELAQGGILFLDE 484 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG++PL LQ KLLR ++ +EIL +G PI VD+RI++ TN+NL + IA +FR DL+YR Sbjct: 485 IGELPLNLQVKLLRFLQDKEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFRLDLYYR 544 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNVIPI +PPLRER ED+ +L +YFL++ + + V+++L ++ WPGN+REL Sbjct: 545 LNVIPIFVPPLRERPEDVPVLANYFLNVFNNKYQMN-KRLHKSVIDVLMEYHWPGNVREL 603 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 NLME +V V +I LP + S+ + A+E E+ Sbjct: 604 ENLMERMV-VTSINNIISMQDLPASFKVPRLKLDSEQDLLP---------LRQAVENTER 653 Query: 554 QMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 +++ A +R S QVA L + +T+ RK KY + Sbjct: 654 ELLEAAFARFRSSYQVATALQVNQSTVIRKAAKYGI 689 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 ID + V+ +D++ R++ N+ A + LG+ G + L + + Sbjct: 128 AAIDAVYNPVIEIDNDFRIKIFNRQASRLLGIDIEEARGANVH--DLLGGTEVLDSLIHG 185 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLK 283 ++L+IG + R + + SV + E+LV + + ++L Sbjct: 186 NHKPLPVNKLVIGDRSFLPYRNDVV---QDGNVIGSVLVLREISEFEELVRQSQYTQKLN 242 Query: 284 RLISRI 289 R + I Sbjct: 243 RELDAI 248 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 141/328 (42%), Positives = 211/328 (64%), Gaps = 4/328 (1%) Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 + ++ +G+ R M+ + + I ++ S +V++ GESGTGKEVVAR IH S R ++P Sbjct: 135 QETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRP 194 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 FI INCA IPEQL+ESELFG+ KG+FTGA + K G + A+ G +FLDEIG++PL QA Sbjct: 195 FIKINCATIPEQLMESELFGHEKGSFTGAVSQ-KAGKFEIAHNGIVFLDEIGELPLHTQA 253 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR ++ +E +G + I+VD+RI++ATN+NL + EGKFREDL+YRLNV+ + LPP Sbjct: 254 KLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPP 313 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER+EDI LL++YF+ R+ GI+ + + K+ WPGN+RE+ N+ E V V Sbjct: 314 LRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVREIKNVCEQAV-V 372 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + V+ +P NG E + ++S + + E+EKQ+I ++L+ + Sbjct: 373 MARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTND-KRSLKDIVAEVEKQVILKSLNEN 431 Query: 564 NSKKQ-VADELGIGIATLYRKIKKYELL 590 N +Q A LG+ +LY K+K+Y+LL Sbjct: 432 NWNRQNTAKALGLNRRSLYAKMKEYDLL 459 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 144/414 (34%), Positives = 218/414 (52%), Gaps = 8/414 (1%) Query: 183 QFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 F+N+T + L I PI+F + V+ ++ ++ I Sbjct: 101 IFLNRTRSRDLQKDTIAFICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIA 160 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHI------EQLVGECRVMRQLKRLISRIAPSPSSV 296 + N + VG MR + IS++APS ++V Sbjct: 161 HAARARQNVMDERVAAIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVAPSSTTV 220 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ A AIH R PFI++NCAA+PE L+ESELFG+ KGAFTGA + Sbjct: 221 LLYGESGTGKELAAHAIHSAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGA-SGI 279 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 + G + A+ GTLFLDE+G++ L+ QAKLLR ++ R +G + + VD+RII+ATN++ Sbjct: 280 RKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRD 339 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 LA+ + EG FR DL+YRLNV PI +PPLRERQ DI+ L YF+ + G I+ Sbjct: 340 LARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLA 399 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V+++L+++ WPGN+REL N+ME V +V +I LP L + + Sbjct: 400 VMDMLQRYTWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVE 459 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 + L+E+E+ I +AL+RH A LG+ + ++KK+ + Sbjct: 460 PYAASGTLQDRLDELERACITDALARHKGHMGHAAQALGLTERVMALRMKKHGI 513 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 9/383 (2%) Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIE 270 T + F+ + Q + D+ + +G + + Q + S I Sbjct: 287 TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS-EQLLSNLGIG 345 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++ + + M L + + +A S S+V++ GE+GTGKEV+ARAIH+LS RR+KP + INCA Sbjct: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP LLESELFG+ KGAFTGA + G + A+ GTLFLDEIGD+PL LQ KLLR ++ Sbjct: 406 AIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQ 464 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 REI +G S I V++R+I+ATN++L Q + + +FR DLFYRLNV P+ LPPLR+R ED Sbjct: 465 EREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPED 524 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 I LL +F R + I + + L WPGN+REL N++E V + + Sbjct: 525 IPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL- 583 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK---- 566 + L T D S L EE E+Q I + L N Sbjct: 584 -NLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE-ERQRIVQVLRETNGIVAGP 641 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A LG+ TL ++++ + Sbjct: 642 RGAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 151/362 (41%), Positives = 215/362 (59%), Gaps = 16/362 (4%) Query: 229 DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISR 288 D+ LI+ + +Q + + HQ+ ++ ++ M + + ++ Sbjct: 110 DELNLIVQRALQLQSMKKEIRHLHQALST--------SWQWGHILTNSPAMMDICKDTAK 161 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 IA S +SV++ GESGTGKE++ARAIH S R PFI +NCAA+PE LLESELFG+ KGA Sbjct: 162 IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGA 221 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTGA + GL + AN GTL LDEIG+MPL+LQAKLLR ++ RE IG I+VDIR Sbjct: 222 FTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 II+ATN++L + EG FREDLFYRLNVI + LPPLR+R+EDI LL ++FL + Sbjct: 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQR 340 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 I P + +L WPGN+RELSN++E V V+ SG +I S LPP + Sbjct: 341 DIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV-VMNSGPIIFSEDLPPQIRQ-PVCNAG 398 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKY 587 +V +L + ++ +EK++I E L + ++ + A LGI L K+++Y Sbjct: 399 EVKTAPVGERNLKEE----IKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEY 454 Query: 588 EL 589 + Sbjct: 455 GI 456 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 153/333 (45%), Positives = 212/333 (63%), Gaps = 8/333 (2%) Query: 252 HQSHTSFSVANAP---DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 HQ+ S S + P + + ++GE M L +I ++A S S+V++ GESGTGKE+ Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VARAIH LS R +K F+A+NCAAIP++LLESELFG+VKG+FTGA A+ + G + A+ GT Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVAS-RIGRFEMADKGT 239 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDM LQ KLLR +++RE+ P+G++ +VD+RII+ATNQNL +A +FRE Sbjct: 240 LFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRE 299 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRL+VIPI LPPLRER D+ LL++ FL R G V+EIL + WPG Sbjct: 300 DLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPG 359 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL NL+E LV + +G VI LP TT ++ +A+ Sbjct: 360 NVRELENLVERLVIIKTTG-VISIHDLPEKYRGGRTTTVLHGEPMTLPDDGF--CLNSAV 416 Query: 549 EEMEKQMIREALSR-HNSKKQVADELGIGIATL 580 EE E ++I +AL + +KK+ A+ L + TL Sbjct: 417 EEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 146/515 (28%), Positives = 257/515 (49%), Gaps = 57/515 (11%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + ++ +G+I+ ++ E IS D Sbjct: 98 IDKNNKIIGIITHTDFINDLVEKISKKC-------------------RDIKNTKLGLTEL 138 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF--------------- 207 ++I+ G+ + D E +N G+ + ++G+ ++ Sbjct: 139 DSIIECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSATLLV 198 Query: 208 ----RPLTFESNFTHGHMQHIVS--WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA 261 + T + F G + S DK+ II + N++ Q + + Sbjct: 199 LKNRKTTTIQQEFKTGVKVLVSSNPIFDKNGKIIMVVTNVRDVTQLYELKEQLQKNKEIT 258 Query: 262 NA---------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + ++V E ++ +L +RIA ++++++GE+G GK+ +A+ Sbjct: 259 LKYVSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKY 318 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IHK+S R K FI +NC A+P L+ESE FGY KGAFTGA+ GK GL + A+ GT+FLD Sbjct: 319 IHKVSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLD 378 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 E+G++P+ +Q KLLR ++ E++ IG + PI++D+R+++ATN++L I + +FREDL+Y Sbjct: 379 EVGELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYY 438 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIP+ +PPLRER+ DI L+++FL ++ A D + + ++ WPGN+RE Sbjct: 439 RLNVIPLYIPPLRERKHDILPLINFFLTQLNKKYNFN-KIFASDALNCMYEYNWPGNVRE 497 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E V ++ + I + LP N++ S+ V+ L+ +E Sbjct: 498 LKNIVERAV-IMSEDDKIKRSDLPKNIIG------SNGMIVTLNTFEEGINLKETLDAIE 550 Query: 553 KQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 K++I++A ++ + + A LGI +T RK +KY Sbjct: 551 KKLIKKAYDKYGNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 219/367 (59%), Gaps = 5/367 (1%) Query: 228 DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLIS 287 D+ ++ + + + + + P +++GE ++ + RL+ Sbjct: 163 DEDTQRLTAIASQVSTALQSTSLYQELQRAKEQPQVPVGYFFNRIIGESPQLQAIYRLVR 222 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 + AP+ ++V++ GESG+GKE+ ARA+H RR++PFI ++CAA+P L+E+ELFG+ +G Sbjct: 223 KAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFGHERG 282 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 AFTGA G +AA+ GT+F+DEIG++PL +Q KLLR I+ RE +G + ++VD+ Sbjct: 283 AFTGADHRV-PGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVDV 341 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ-EDIELLVHYFLHLHTRRL 466 RI++AT+++LA+ +AEG+FREDL+YR+ V+ + LPPLRER EDIE L +F+ RR Sbjct: 342 RIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARRH 401 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 P ++ VE L+++RWPGN+REL N +E V V+ GE+++ L P++ Sbjct: 402 RLTPPRLSAAAVERLKRYRWPGNVRELENCIESAV-VLCEGEILEEHLPLPDVDRAALPP 460 Query: 527 QSDVTEVSEAHLSLD-DAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKI 584 + V+ DAG L E+E++ I L ++ A L IG TL RK+ Sbjct: 461 PAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLDAVKGNRTAAARVLAIGRNTLARKL 520 Query: 585 KKYELLN 591 K+Y L + Sbjct: 521 KEYGLGD 527 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 231/475 (48%), Gaps = 40/475 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 K+L G ++ ++DN +G+ V+D + +V + K G+ +G Sbjct: 89 VADKILGPYGNNSINEEMVRMVLDNPYEGLSVIDTKGKVTMFSPANEKWFGLESGGGMGL 148 Query: 204 PI-RFRPLTFESNFTHGHMQHIVSWDDKSELIIG------------------------QL 238 + + P T + + D E I QL Sbjct: 149 SLSQLAPGTHLTKVARTGVGERAVVDLHGETKITINLPVRKDNRVIGAFGRILFQSPEQL 208 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + R + + + + E ++ + M+++ RIA S ++V++ Sbjct: 209 EKLADRVRAMERKVERYETLLDEMRRHRFSFENILTQNPDMQRIIEQARRIAASSATVLI 268 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESGTGKE+ A+A+H+ S RR PF+AINC AIP L+ESELFGY +GAF+GAS GK Sbjct: 269 LGESGTGKELFAQALHEASHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKP 328 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A GTLFLDEIG++P+ QAKLLR +E R+I +G ++PI VD R++ ATN++L Sbjct: 329 GKFELACDGTLFLDEIGELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLT 388 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 GKFR DLFYR+N PI +PPLR+R +DI LL +FL ++ G P + + + Sbjct: 389 ALANSGKFRSDLFYRINEFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFSEEAI 448 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++L + WPGN+REL +L+ + G ++ LP E + Sbjct: 449 KVLMSYEWPGNVRELRSLI-RQMAWKFQGMTVELHNLPQAFHK-------------ERKV 494 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYELLNT 592 ++ L E+ I AL N + A LGI LY+K+ + + T Sbjct: 495 TMSGTLEEQLARAERNAIETALQTSNGNRALAARMLGIHRTALYKKMNRLGVDGT 549 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 165/461 (35%), Positives = 242/461 (52%), Gaps = 34/461 (7%) Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG---- 202 +L D +T I+ + VL D + F N+TA + L ++ + Sbjct: 195 SILSSMERKDEYLTTISTTINRISNAVLSFDTSGSLLFSNETAERMLPTLRECLFSGEAE 254 Query: 203 --KPIRFRPLTFESNFTHGHMQHIVSWDDK---------SELIIGQLHNIQGRQLFLMAF 251 I RP+ ++N + S + + + A Sbjct: 255 SFLHIGRRPIEGKANLHKKQQILRLGGKIYVAEYLPVIVSRRLKSIVVIVSSENSIQSAE 314 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + S S + H E ++GE RV++ L + A S SSV++ GE+GTGKE+ A+ Sbjct: 315 KRLRLSKSERGYTAKSHFEDIIGESRVLKDTIHLARKYARSQSSVLITGETGTGKELFAQ 374 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 +IH S R ++PF+AINCAA+P+ LLESELFGYVKGAFTGA+ GK G+ + A+ GT+FL Sbjct: 375 SIHNESSRADEPFVAINCAALPQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFL 434 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG+M L +QAKLLR ++ RE+ +G I VDIRIISATN+NL + + + FREDL Sbjct: 435 DEIGEMDLNVQAKLLRVLQEREVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLL 494 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+ + LPPLR R D+ LLV+ ++ R PD +E+L + PGN+R Sbjct: 495 YRLNVLELNLPPLRSRTGDVPLLVNAYMKRQNR-----PVTFLPDAMELLSREPCPGNVR 549 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 +L NL+E +V + G I ++ L +G TE L + Sbjct: 550 QLFNLLERIVTL-SDGREISASWLKNIFSFSGKTE------------PLPGLLEDTVGNC 596 Query: 552 EKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 E+ I AL + H ++ + A +LGI ATL+RK+KKY L + Sbjct: 597 EQTEIEHALRKNHGNRAKTAKDLGISTATLWRKMKKYGLFS 637 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 142/429 (33%), Positives = 231/429 (53%), Gaps = 17/429 (3%) Query: 168 NMDQGVLVVDDENRVQ----FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 + ++G+ +VD + V N + L +++ P+ M+ Sbjct: 34 SAEEGLKIVDRADMVLTDLKLPNMDGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKA 93 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLK 283 + + L + + L + A + + A + +VG M+++ Sbjct: 94 GATDFLLKPFSLDHLMQVVDKALEVRALREENRELKAALGR-RYEFDNIVGRSPAMQEIF 152 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 I R+ PS ++V++ GESG GK+++ARAIH S R+++P + INC AIPE L+ESELFG Sbjct: 153 AAIERVGPSRATVLLTGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFG 212 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y KGAFTGA K G + A+TGT+FLDEIGD+P +Q KLLR ++ RE +G++ Sbjct: 213 YEKGAFTGAQTT-KPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTR 271 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 +D+R+++ATNQ+L + +G FREDL+YRLNV+P+ +PPLRER+ DI L ++F+H Sbjct: 272 HIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLA 331 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 G I +E L + WPGN+REL N++E + V+ +G +D+ + Sbjct: 332 PDTGCQVESITDAGMEKLMAYHWPGNVRELENVIERSL-VMATGTQLDADDIKLESAPRP 390 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYR 582 + +D + E G +L++ E+++IREAL R +K Q A LG+ L Sbjct: 391 RAQGNDNHFLPE---------GLSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRY 441 Query: 583 KIKKYELLN 591 ++ + L + Sbjct: 442 RLTQMGLES 450 >UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY50_DESAC Length = 455 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 156/459 (33%), Positives = 248/459 (54%), Gaps = 29/459 (6%) Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFES 214 ++ I+ ++++ M +GV+ +D ++ + N A + V IIG+ I Sbjct: 2 AKEVTSIYQSIVEEMTEGVVFLDADDVICICNPAAERIRRVKAERIIGRSIYSLHPGRMH 61 Query: 215 NFTHGHMQHIVSWDDKSELII------------GQLHNIQGRQLFLMAFHQS-------- 254 + ++ + S S I + G L + + Sbjct: 62 DRIRQLIESLKSGRISSGSRIIHAQKRFFSNSYTAIKAPDGTYLGTLLISRDVTEEKRLR 121 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 + S+ + + ++ LV ++ + + S+V+V GE+GTGKE V +H Sbjct: 122 EENESLRSRQSDEKMKCLVVHSDAALRVMDMAVSLGQIDSTVLVTGENGTGKECVVELLH 181 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 + S RRN P + +NCAA+P+ L+ESELFG+VKGAFTGA+ N K G + AN GTLFLDE+ Sbjct: 182 QNSPRRNGPLVKVNCAALPDNLIESELFGFVKGAFTGATENRK-GKFELANGGTLFLDEV 240 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GD+PL QAKLLR ++ R++ P+G S + +D+RI++ATN L+ +A GKFREDLFYRL Sbjct: 241 GDLPLASQAKLLRVLQERKVQPLGGKSEVLIDVRIVAATNHILSDDVAGGKFREDLFYRL 300 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NVI I +PPLRER+EDIE L FL + ++ ++ + + IL H +PGN+R+L Sbjct: 301 NVIHIDVPPLRERREDIEPLAEMFLDKFSTQMNKPVRHLSTEALNILLHHHFPGNIRQLE 360 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 + ME V + SGE+I LP +LL+ + V ++ + A A++ E+ Sbjct: 361 HAMERAVAL-SSGELILPDDLPQDLLS------ASVVTTAQHTIQGGLALKEAVDFFERD 413 Query: 555 MIREALSRHNSKK-QVADELGIGIATLYRKIKKYELLNT 592 I AL + + KK + A+ LGI +L+ KI++Y L + Sbjct: 414 YIAAALKQCDYKKSKTAEHLGISRKSLWEKIQRYNLTDA 452 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 155/450 (34%), Positives = 235/450 (52%), Gaps = 34/450 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI---------RF 207 K ++D++ G+ VD+ + N+ A + GV IG+P Sbjct: 120 RSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQEAIGRPCYEIFKSEACTG 179 Query: 208 RPLTFESNFTHGHMQHIVSWDDKS------ELIIGQLHNIQGRQLFLMAFHQSHTSFSV- 260 E+ T +Q V D+ + L++ G + + + T + Sbjct: 180 ACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAGNVMGGVETVRDLTPITAI 239 Query: 261 -ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 ++ LV MR+L ++ IA S ++V + GESGTGKE+ ARAIH LS R Sbjct: 240 KEEIREKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNGESGTGKELFARAIHDLSPR 299 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 R P + +NC A+PE LLESE+FG KGAFTGA+ N + G ++ N GT FLDEIGD+PL Sbjct: 300 REGPMVIVNCGALPETLLESEIFGVRKGAFTGATEN-RPGRLELCNGGTFFLDEIGDLPL 358 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ KLLR +E E P+GA SPI+ D+R I+AT++NL + +AEG FR+DL++R+N++ + Sbjct: 359 PLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMVAEGTFRQDLYFRINIVTL 418 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +PPLR+R+EDI LLV L ++P+V+++L H +PGN+REL NL+E Sbjct: 419 NIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLLLTHSFPGNVRELLNLIEQ 478 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 V ++ G I LP N L + + + + D + Sbjct: 479 SV-ILCRGTEITLDHLPTNFLGQSHEQAQNTRRSGKIPTAAD--------------LNAL 523 Query: 560 LSRH-NSKKQVADELGIGIATLYRKIKKYE 588 LSR+ ++ +VA EL I TL+R +K+ Sbjct: 524 LSRYSGNRAEVARELNIDRTTLWRWMKRLG 553 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 8/140 (5%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 K F+ ++D++ GV VD + V N+ A G+ + + +G+P Sbjct: 8 EQLKYFSHIMDSVADGVFTVDRDMHVIAFNRAAELMTGIKRADAVGRPCH----EIFRTS 63 Query: 217 THGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 + + K + + + I+ + L+ S + +E L Sbjct: 64 VCDNGCPVREAMKKGKPVTNREVTIKNAEDKLIPVSVSASILYDDEGNPIGGVETL---- 119 Query: 277 RVMRQLKRLISRIAPSPSSV 296 R M+++ ++ +A +V Sbjct: 120 RSMKRIYAIMDSVADGLFTV 139 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 147/466 (31%), Positives = 245/466 (52%), Gaps = 49/466 (10%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-----------RFRP 209 ++ +D++ GV + D+E ++ +VN+ K G+ +++G + P Sbjct: 24 VYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYEDVVGHYVDDLEAKGIFKNSTSP 83 Query: 210 LTFESNFTHGHM-------------QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 N + + I +++ ++ +I ++ + Sbjct: 84 HVRRENKIISSIGKAKDGVEMLITGKPIYDENNELIYVVVNQRDISDLEIMRQKLIVTEN 143 Query: 257 SFSVANAPDEPHIE-------------QLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 +V + E ++G+ +R + LI++IAP +V++ GESG Sbjct: 144 KMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSEEIRDVIYLINKIAPLDVTVLITGESG 203 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 GKEV+A I + S R+NK FI +NCAAIP LLESELFGY KGAFTGA K GL Q Sbjct: 204 VGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLLESELFGYEKGAFTGADK-AKKGLFQL 262 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GT+FLDEIGD+PL +Q KLLRA++ +E++P+G + ++D+RII+ATN++L+Q + E Sbjct: 263 ADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVGGTQIQKLDVRIIAATNKDLSQQVKE 322 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 GKFR+DL+YRLNV PI +PPLRER+ DI L YFL + ++ G ++ + +L Sbjct: 323 GKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYFLKQYNKKYGKSVV-LSSEAYSLLMN 381 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E L+ + VI+ + + N + + + + + + Sbjct: 382 YDWPGNVRELQNIIERLIIISDDQTVINKDQIEKIMFPNTMLDITKSEKGLKEIIQEIEK 441 Query: 544 GGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 + + L + ++ A +L I +TL +K+KKY + Sbjct: 442 EI----------LIDVLKNTGTTRKAAKKLKIDQSTLVKKLKKYGI 477 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 137/362 (37%), Positives = 210/362 (58%), Gaps = 11/362 (3%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + + + LMA + +T + ++G+ + ++ + ++AP+ S+V Sbjct: 123 ERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTV 182 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+GTGKE+VA AIH S R N+PF+ +NCAA+ +LESELFG+ KGAFTGA A Sbjct: 183 LLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQ- 241 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 + G + A+ GTLFLDE GD+P+ +Q KLLRA++ RE +G + I+VD+R+ISATN++ Sbjct: 242 RPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNRD 301 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L I G FREDL+YRLNV PI LPPLR+R ED+ LV +F+ R + PG+ Sbjct: 302 LEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGA 361 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE----QSDVTE 532 ++ LR + WPGN+REL N++E + ++ G +D+ L T S ++E Sbjct: 362 ALDKLRSYTWPGNVRELENIIERAM-ILARGRELDADHLDFGRRAQNATPVSGTPSVISE 420 Query: 533 VSEAHLSLDDAGGTALEE----MEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKY 587 + L L E E++ I A+ + N+ A LGI +TLY +++K+ Sbjct: 421 TASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRKH 480 Query: 588 EL 589 L Sbjct: 481 GL 482 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 149/456 (32%), Positives = 241/456 (52%), Gaps = 42/456 (9%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN-NIIGK-------PIRFR 208 I +++N +G+++VD + ++ +N +G + GK R Sbjct: 126 EQKAILEAILENAYEGIVIVDKQGKIVKMNNAYRSFIGGKDEAEVEGKFVADVIENTRLH 185 Query: 209 PLTFESNFTHGHMQHIVSWDD--------KSELIIGQLHNI--QGRQLFLMAFHQSHTSF 258 + G +Q I + ++ ++G + + +G ++ Sbjct: 186 EVVKSGIPERGEIQRIEGQNMVVHRIPIWQNHRVVGAVGMLIFEGVSELYEILQRARVFL 245 Query: 259 SVANAPDEPHIEQ-------LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 S + EP + L+G ++ K ++A + ++V++ GE+GTGKE+ AR Sbjct: 246 SEESLSTEPTKKNATSVERRLIGRSEALQSCKCFARKVARTKATVLLTGETGTGKELFAR 305 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH++S + N PF+AINCAA+PE LLE+ELFGY +GAFTGA G G + A+ GTLFL Sbjct: 306 LIHQMSNQANGPFVAINCAAMPETLLEAELFGYEEGAFTGARRGGAVGKFEQASGGTLFL 365 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE G+M LQAKLLR +E +++ +G+ P+Q D R+I+ATN +L Q +A+GKFR+DL+ Sbjct: 366 DEAGEMSNALQAKLLRVLETKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGKFRKDLY 425 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL I + +PPLRER+EDI L+ F+ + G + D + ++ WPGN+R Sbjct: 426 YRLVAITLNIPPLRERKEDIPYLISAFMDRFAQEYGLRHKRFCEDALHAFLEYDWPGNVR 485 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL+N ++Y++ + E + S LPP L N H + ++ T Sbjct: 486 ELANAIDYIMAI-GEEEKVTSNTLPPFLRN---------------HAAKKESLKTVARRS 529 Query: 552 EKQMIREALS-RHNSKKQVADELGIGIATLYRKIKK 586 EK+ I +A+ + +K + A LGI ATLYRK+K+ Sbjct: 530 EKERIEQAIVLANGNKAKAAKLLGIHRATLYRKLKE 565 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 242/506 (47%), Gaps = 32/506 (6%) Query: 100 GTPV--ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDN 157 +P+ +GVI L + H + + S +R + LE Q Sbjct: 158 SSPIFSPDGKELLGVICLSGYSENMHVHTIGLVSQASKNIRSRL-----QSLEKQQEIAI 212 Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-------IIGKPIRFRPL 210 ++ +I++ G++ VD + + N A L + + IG + Sbjct: 213 KNQYMTAIIESKSSGIVTVDQQGNIVQTNHKARNLLAIKADARDNLLTTYIGNSLNIADC 272 Query: 211 T-----FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 F + + + + + + + G F+ + + Sbjct: 273 LERGRGFRAREIVSKKTGVSYFASLDPIRLEEEQLVGGIFTFVEKNEALRRAVKLIGTQA 332 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + ++G+ ++ L A + +SV++ GE+GTGKE+ A+AIH S +N F+ Sbjct: 333 PFTFDSILGDSPALKSALHLARISAKNTASVLLYGETGTGKELFAQAIHNASEHKNGSFV 392 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AINC AIP++LLESELFGY +GAFTGA G+ G I+ AN GTLFLDEIGDMP +Q KL Sbjct: 393 AINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIELANNGTLFLDEIGDMPFEMQVKL 452 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ EI +G I V++RIISAT+++L + I +FR DL+YR++ + I +PPLR Sbjct: 453 LRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDVQQFRADLYYRISTLRINIPPLR 512 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ERQ DI LV YF+ H + + + K+ WPGN+R+L + E + + Sbjct: 513 ERQGDILKLVQYFIDRHIIKFDRRKQVLPSQTRLAISKYSWPGNIRQLESATERAIYLAE 572 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G ++ +L +N E + G LEE+E Q+I E L+ ++ Sbjct: 573 DGVLLPEHFAISDLFSNTNKEV------------VKVVGTQTLEEVESQIITETLAFFDN 620 Query: 566 K-KQVADELGIGIATLYRKIKKYELL 590 + A LGI TLYRKI KY ++ Sbjct: 621 NISKTAQSLGISRPTLYRKIDKYRIV 646 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 140/322 (43%), Positives = 207/322 (64%), Gaps = 4/322 (1%) Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331 ++G+ ++++ I +++ + ++ +++GESGTGKE+VA+ IH+ S R KPFI +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391 IP +LLESELFG+ KGAFTGA N + G + AN GT+FLDEIGDMPL LQ K+LR I+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQ-NCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQE 120 Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451 + IG + PIQV++RII+ATN++L + EG+FREDLF+RLNV+P+ +PPLRER+EDI Sbjct: 121 KTFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDI 180 Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511 LL YF++ + + G I P+V++I + WPGN+REL NL+E L V+ G I+ Sbjct: 181 PLLCEYFINKFSHKFGYSLQ-IKPEVMQIFLNYTWPGNVRELENLIERL-YVLNEGGNIN 238 Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVA 570 +P + + Q ++ S L+E EK++I AL+ H K + A Sbjct: 239 IKDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAA 298 Query: 571 DELGIGIATLYRKIKKYELLNT 592 L I TL K+K+ + + Sbjct: 299 KYLNINRTTLIEKMKRLNIKDN 320 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 173/603 (28%), Positives = 293/603 (48%), Gaps = 71/603 (11%) Query: 15 PTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKV 74 I +A + + EV IVDE+ + G + K +L + LE ++ Sbjct: 26 EAISSAFNKMAKLYKDEVLIVDEDDNII---GIFTKNDLYKLENQGKKFNDNLENYIKRD 82 Query: 75 VTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFS 134 V + + + K P++ + +G++ L + +E Sbjct: 83 VITISEEKSIISARNIM-VKNKIE-RLPIVHNRKIIGIVHLDDLNNEL------------ 128 Query: 135 DYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG 194 + + + +++NM + V + +++ V + N+++ G Sbjct: 129 -----------------YTNVEELYALQDRILENMHEAVCITNNKGVVIYWNKSSEDLYG 171 Query: 195 VVQNNIIGKPIRF--------------RPLTFESNFTHGHMQHIVS----WDDKSELI-- 234 V + IIGK + R +T +N I+S ++ K++LI Sbjct: 172 VKRQEIIGKYLGSFFPNALILKVLKNPRKITNVNNEPSPGKTVILSAVPIFNSKNKLIAV 231 Query: 235 ------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISR 288 I ++ ++ + + S ++G+ + + + + + Sbjct: 232 ASTDRDITEVISLSKELMQEKKKVEFFESAYKKEIASNYSFSSIIGKSQKIIENIAIAKK 291 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 +AP+ +SV++ GESGTGKEV A+AIHK SGR F+AINC+AIPE L ESELFGYV G Sbjct: 292 VAPTSASVLITGESGTGKEVFAKAIHKASGR-TGNFVAINCSAIPENLFESELFGYVGGT 350 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTG+ GK G + AN GTLFLDEIGDMPL +QAKLLR ++ + IG+ +V+ R Sbjct: 351 FTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQDGVVYRIGSQKGTKVNCR 410 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 I++ATN++L I E FREDLFYR V+ I LPPLRER++DI+ + F++ + + G Sbjct: 411 ILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDIKDFIDLFINQISEKEGI 470 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 I +V +IL ++W GN+R+L N++E +V + +GEV + +P +++ + Sbjct: 471 KINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEV-TISSVPNHIVQD------ 523 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKY 587 E E ++ EK++I+E + +KK+ A+ L I +TLY K+ +Y Sbjct: 524 --VEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILNIKRSTLYYKLNQY 581 Query: 588 ELL 590 +L+ Sbjct: 582 DLI 584 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 149/395 (37%), Positives = 227/395 (57%), Gaps = 14/395 (3%) Query: 203 KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSH----TSF 258 K + F P + + + I + +++ ++ L +QS + Sbjct: 73 KSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRIYQSRKVEVENL 132 Query: 259 SVANAPD-EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + + + +E+++G M+ + I ++A S ++V++ GESGTGKE+VA AIH+LS Sbjct: 133 QLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQLS 192 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R+N PF+ ++CAA+ QLLESELFG+ KGAFTGA + G + A GTLFLDEIG++ Sbjct: 193 PRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIER-RIGRFEEAARGTLFLDEIGEI 251 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 L Q KLLRA+ + I +G++ + VD+R+I+ATN+NL + + EGKFREDLF+RLNV+ Sbjct: 252 DLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVV 311 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 I +PPLRER+EDI LL FL G ++P+ ++IL ++ WPGN+REL + Sbjct: 312 RIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNVRELKMAI 371 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E+ V V+ GE I LP + + ++ S + L+E EK++I Sbjct: 372 EHGV-VLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFN------LKEAEKRLIL 424 Query: 558 EALSRHNSKK-QVADELGIGIATLYRKIKKYELLN 591 AL KK A +LGI TL RKIK++EL + Sbjct: 425 HALRVCQGKKTSAAKKLGISRKTLQRKIKQFELTD 459 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 147/385 (38%), Positives = 226/385 (58%), Gaps = 17/385 (4%) Query: 210 LTFESNFTHGHMQHIVSWDDKSELIIGQL-HNIQGRQLFLMAFHQSHTSFSVANAPDEPH 268 ++F S + + + + + E I QL IQ + L A + +E Sbjct: 273 ISFYSRNADTYTEELFTLLGRMENGIRQLLEQIQQKNDALSARIVARKRVEKPLIDNEVL 332 Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 E +VG V + I+ ++ +PSSV+++GESGTGKE++AR IH+ S R+NKP I +N Sbjct: 333 FEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVN 392 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAA+P +L+ESELFG+ KGAFTGA+ + + G + A+ GT+FLDEIG++P+ Q KLLR Sbjct: 393 CAALPAELIESELFGHEKGAFTGAT-DKRAGKFEMADGGTIFLDEIGELPIESQVKLLRV 451 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ +E +G S I+VD+R+I+ATN+NL + +AEG+FR DL+YRLNV P+ LP LRER+ Sbjct: 452 LQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERK 511 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 EDI LL +F+ + +L I+PD ++ LR + WPGN+RE+ ++ME + ++ +G Sbjct: 512 EDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSYDWPGNIREMEHVMERSL-LMTTGT 570 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-- 566 ++ +LP + V S D LEEME + I + L K Sbjct: 571 ILKQIMLP----------KMAAQPVGTTISSADGNRIKTLEEMEIEHILQVLKSCKGKVC 620 Query: 567 --KQVADELGIGIATLYRKIKKYEL 589 A+ LG+ +TL KI+K + Sbjct: 621 GVGGAAELLGLPPSTLNSKIRKLGI 645 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 176/523 (33%), Positives = 277/523 (52%), Gaps = 52/523 (9%) Query: 96 KAFLGTPVILQDRCV--GVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQG 153 KA L + + + + I +I + E + ++ F+D K+ Sbjct: 67 KAELSQMIFINGKEIISNRIPII-----KDEMVEGSIEIFTDITDQ------KKMQNKIN 115 Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------R 206 + T++D ++ +V++++ + ++ + LG +N IGK + + Sbjct: 116 LDKDYIDALLTVMDAFNEWFVVINEKGIITSISDDYKEFLGC--DNPIGKKVEDIIENTK 173 Query: 207 FRPLTFESNFTHGHMQHI-----------VSWDDKSELIIGQL--------HNIQGRQLF 247 + G +Q I + D K +G++ H + + L Sbjct: 174 MGKVLKTGIADIGGIQEIKGNKMIAMRVPIKKDGKVISAVGKVVFKDISDFHALSKKLLD 233 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 L + + S N + +E ++G +R++K LI ++A + S+V++ GESGTGKE Sbjct: 234 LEKEVEFYKSKIAENKTAKYSVENIIGHSNKIRKVKDLIGKVANTNSNVLINGESGTGKE 293 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 ++A +IH S R PFI INCA+IP +LLESELFGY +GAFTGA GK G + AN G Sbjct: 294 MIAHSIHNSSKRYLAPFIKINCASIPAELLESELFGYEEGAFTGAKKGGKKGKFELANGG 353 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 ++FLDEIGDM + +QAK+LR I+ REI IG S VD+RII+ATN+NL + + +G+FR Sbjct: 354 SIFLDEIGDMNINMQAKILRVIQEREIESIGGSGVKSVDVRIITATNKNLEELVKKGEFR 413 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNV+ I PPLRER+EDI L + +RL GI+ D +E L + WP Sbjct: 414 EDLYYRLNVVKIVSPPLRERKEDIPALANALRIKIAKRLDVYVEGISKDAIECLGNYDWP 473 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N++E +N++ S +I + L + SD ++ T Sbjct: 474 GNIRELENVIERAINLLDSNIMIKTEHLSKRFTSAKYKRYSDK----------NEYLKTI 523 Query: 548 LEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589 +EE+EK++I E L+R+N K + A LGI A LY+KI+++ L Sbjct: 524 VEEVEKEVILECLNRNNWNKNKTAQILGISRAGLYKKIEEFNL 566 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESN 215 + + F +I N+++ ++V+D + + +N+ A G+ +GK I + Sbjct: 3 LEECFELIIQNVNEALIVIDKKGIILVINKKAEDMFGISSERNLGKYIGEVLPEIQIPKI 62 Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQ 271 G + + II I ++ + ++ ++++ Sbjct: 63 TKAGKAELSQMIFINGKEIISNRIPIIKDEMVEGSIEIFTDITDQKKMQNKINLDK 118 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 225/425 (52%), Gaps = 40/425 (9%) Query: 180 NRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 R+ + A ++ G Q +IG+ + + + + + Sbjct: 198 GRLILFREVACRSAGDAQCRVIGRSVELWE-----DPQEDLRHLQLGDRGPNAEPVAATA 252 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 G + P LVG ++ R+AP+P++V+ Sbjct: 253 EALGE-----------------HTPTSGQDPTLVGASSAFNAAFHMVRRVAPTPATVLFT 295 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESG GKE+ AR++H+ S R +PF+AINCAAIPE L+ESELFG +GAFTGA A+ + G Sbjct: 296 GESGVGKEMFARSLHRNSDRAARPFVAINCAAIPETLIESELFGVERGAFTGAGAS-RPG 354 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + A+ GTLFLDEIG + L+ Q KLLRA++ EI +G + ++V++R+++ATN++L + Sbjct: 355 RFERADGGTLFLDEIGTLSLVAQGKLLRALQEGEIERVGGTKTVKVNVRVVAATNEHLRE 414 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + +G FREDLFYRLNV PI LPPLRER++DI LL+ +FL+ + R PG + V+ Sbjct: 415 AVRKGSFREDLFYRLNVFPIHLPPLRERRDDIPLLMQHFLNHYRERYQREVPGFSQRAVK 474 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST--------------LLPPNLLNNGTT 525 L + +PGN+REL NL+E V +V GE+ID LP + + Sbjct: 475 ALFNYGFPGNIRELQNLIERAVIMVNDGELIDVHQLFRGGEELSEGVLSLPASAAGDAGG 534 Query: 526 EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKI 584 TE S +H+SL G L E++ I AL R + A +LGI ATL + Sbjct: 535 RLVGGTESSSSHVSL--TPGQTLGGAEQEWIAAALRRSAGNIAAAARQLGITRATLLYRA 592 Query: 585 KKYEL 589 K++ + Sbjct: 593 KQHGI 597 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 147/451 (32%), Positives = 236/451 (52%), Gaps = 27/451 (5%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF------RPL 210 S +F T+ GVL VD + ++ N ALK + + G ++ P+ Sbjct: 195 ERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGPKKKLQGLSLQSAFPFLSEPV 254 Query: 211 TFESNFTHGHMQHIVSWDDK-----------SELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 + + ++ W + + I G + Q Q + Sbjct: 255 STVISTGTELPNQLIRWKNYTINATIHPVIINSRITGIVVTFQDVTQIQQVEIQIRKKMT 314 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 H ++ E + + + A S++++ GE+GTGKE+ A++IH S R Sbjct: 315 DKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEGETGTGKELFAQSIHNASTR 374 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 N PF+A+NCAA+PE LLESELFGYV+GAFTG + GKTGL + A+ GTLFLDEI ++PL Sbjct: 375 CNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGGKTGLFELAHKGTLFLDEISEIPL 434 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 +Q KLLR ++ E+ +G I VD+RII+ATN +L++ +G+FR+DL YRLNV+ + Sbjct: 435 SIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHSLSRITEQGRFRQDLLYRLNVLKL 494 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 LPPLR R D ++L ++L+L+ R+LG + P +A +++L + +PGN+REL N+ E Sbjct: 495 FLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVATAAIQMLSDYHFPGNIRELRNVTER 554 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 LV + E I + + L E+ S D ++ E++ + Sbjct: 555 LVVICMDKEEITADDMREAL---------HPEELPVKFQSTDMPIPPFYQDGEREFLIRI 605 Query: 560 LSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 L N ++ A++LGI TL+R++KK+ + Sbjct: 606 LEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_Q39QH6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=5 Tax=Geobacter RepID=Q39QH6_GEOMG Length = 609 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 173/525 (32%), Positives = 270/525 (51%), Gaps = 65/525 (12%) Query: 101 TPVILQDRCVG-VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 P++ DR VG V++++ V ++ + SD+L + Sbjct: 106 VPIVEDDRIVGGVLTVLGVLPKETDGSSDDL-------------------------KELL 140 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------FRPL 210 + +D G++++D V VNQ+ + L +IGK + P+ Sbjct: 141 RSAGAFMDLDYHGIIILDRNGTVVMVNQSFAEVLDATPQTMIGKHVHQAYHNSQPSRMPV 200 Query: 211 TFESNFTHGHMQHIVSWD--------DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 E+ ++ + K +IG + I + + ++ + + Sbjct: 201 VMETGKPEISSHYMNGKEVFASRYPLIKQGKVIGCVGKILFKDVREISLLANRLQSAREK 260 Query: 263 APD-----------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + I+ +VG+ + +LK + R+AP S+V++ GESGTGKE+ A Sbjct: 261 KTPARAIAEKGSLFKYDIDSIVGQSAKIAELKETLLRVAPKNSNVLLRGESGTGKELCAH 320 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S RR PF+ +NCAAIP+ LLESELFGY GAFTGA G+ G + A+TGT+FL Sbjct: 321 AIHAASTRRYAPFVKVNCAAIPDHLLESELFGYADGAFTGAKKGGQVGKFELADTGTIFL 380 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMPL +QAKLLR ++ RE++P+G++ P VD+R+++ATN NL Q ++EGKFREDL+ Sbjct: 381 DEIGDMPLAMQAKLLRVLQERELVPLGSTVPKVVDVRVVAATNSNLEQLVSEGKFREDLY 440 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+ +T+P L++R EDI ++ F+ G GI + E+L+ H WPGN+R Sbjct: 441 YRLNVVALTIPALKDRMEDIYIITKNFIDHFNAEFGLSVQGIDSEAWEVLKHHNWPGNIR 500 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNL--------LNNGTTEQSDVTEVSEAHLSLDDA 543 EL N++E N V SG +I LP L L + D+ HL + Sbjct: 501 ELRNVLESAFNAV-SGPLITKENLPIRLAQLCPHSTLPHEFAPGEDLESYIRQHLGKKNI 559 Query: 544 GGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKY 587 ++++E+ ++ +AL N K A LGI LY+K++KY Sbjct: 560 SDM-MDDLERVILEKALEICNGNKLHAAQLLGISRPGLYKKLQKY 603 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 158/497 (31%), Positives = 251/497 (50%), Gaps = 29/497 (5%) Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDN 168 +G L ++ I+ + + + ++ L+ D I + +++ Sbjct: 145 VIG--GLSVARMAKRFGIAAIMGDADEMAIRLAVEQARHTLKYVLNLDRQYNIVSAILNC 202 Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNII---------------GKPIRFRPLTFE 213 ++G+L VD + +N A + LG + + I G+PIR R + Sbjct: 203 ANEGILGVDGSGTIFELNHHAHRLLGCGRGDNINTILPESDSRIAITNGEPIRSRIV--- 259 Query: 214 SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLV 273 N + S D E G + +Q + E +V Sbjct: 260 -NSGKATLIFNASPIDYGENGGGTVLTVQEGDYIQGISQKIRQQHIAKGHVARIRFEDIV 318 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G+ + + A S SSV+++GE+GTGKE+ A++IH S R +KPF+AINCAA+P Sbjct: 319 GKGEAIHHTIERAKKFALSESSVLIIGETGTGKELFAQSIHNHSRRHSKPFVAINCAALP 378 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +LESELFGYV+GAFTGA GK+G+ + A+ G++FLDEIG++P+ +QAKLLR I+ R+ Sbjct: 379 NNVLESELFGYVRGAFTGAKDAGKSGIFELAHGGSVFLDEIGEIPIEMQAKLLRVIQERQ 438 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + IG + VD+R+ISATN+N+ + G+FREDL++RLN + + LPPLRER D+ Sbjct: 439 VQRIGDDKLVPVDVRVISATNKNVDNEVKLGRFREDLYFRLNTLELELPPLRERTGDVPT 498 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L+ +F+ G PD L + WPGN+R+L N +E L NV+ + + Sbjct: 499 LIRHFMGRA----GRREVSFTPDAQRFLNVYSWPGNVRQLGNFIERL-NVLYDQPSMSLS 553 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADE 572 + L + + L+ DD LE+ME+ +I EAL ++++ + Sbjct: 554 EVCDLLGTAAGASVQGAAQQRPSTLAPDD--ENVLEKMERDLIAEALDITTGNREKASII 611 Query: 573 LGIGIATLYRKIKKYEL 589 LGI +TL RK K+Y L Sbjct: 612 LGISPSTLGRKKKQYGL 628 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 160/396 (40%), Positives = 232/396 (58%), Gaps = 15/396 (3%) Query: 200 IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 I+G P+ R + ES G + + + E II +Q L ++ Sbjct: 82 IVGVPVDHRGMALES-LRRGAFFCLNTPYNHEETIIATSRALQHHDLLTKGEIKAR---- 136 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISR-IAPSPSSVMVVGESGTGKEVVARAIHKLSG 318 ++G+ MRQL I + A SSV+V+GESGTGKE+VARAIH Sbjct: 137 --KFRKSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIHAHGP 194 Query: 319 RRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 R K F+ +NCAAIPE LLESELFGYVKGAFTGA+ K G +Q A GTLFLDEIGDM Sbjct: 195 RSRKNFVPVNCAAIPEDLLESELFGYVKGAFTGAT-QAKMGRLQYAEGGTLFLDEIGDMK 253 Query: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 LQAKLLR ++ +E P+G P+ VD+RI++AT+++L + +AEG+FREDL+YRLNVIP Sbjct: 254 ASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIP 313 Query: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 + +PPLR+R+EDI LL+ F+ ++ R+ + + G + D ++ L+++ WPGN+REL NL++ Sbjct: 314 LQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQALKQYPWPGNVRELENLVQ 373 Query: 499 YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---GTALEEMEKQM 555 + G+ + LP +Q V E E +SL+D G + E Q+ Sbjct: 374 RMSIFFA-GQSVSRKDLPEKYQGCDEAQQQPVQE-QENSISLEDGGVDFNLLVNRFENQL 431 Query: 556 IREALS-RHNSKKQVADELGIGIATLYRKIKKYELL 590 I +AL+ +K++ A L + TL K+K+ +L Sbjct: 432 ILQALNVTGGNKREAAKLLNLKRTTLIEKLKRKNIL 467 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 178/517 (34%), Positives = 275/517 (53%), Gaps = 46/517 (8%) Query: 99 LGTPVILQDRCVGVISLIAVTHEQQEH---ISDNLREFSDYVR--------HISTIFVSK 147 + + L++ V +++ ++ Q++ + D L+ F + + + K Sbjct: 1 MSNKIKLENIDVSLLTSVSKALSQKDFDKALRDILKIFYSFWGVEYSYIAFYDKSTKTIK 60 Query: 148 LLEDQGPGDNISKIF----ATMIDNMDQ---GVLVVDDENRVQFVNQTALKTLGVVQNNI 200 + E G ++ KI ++ N+ + V++ D ++ F+N+T K L ++N Sbjct: 61 IREAFGFNQSVKKILFESGKGIVGNIFKNSIPVVIKDPKHDKAFLNKT--KILDKIKNEA 118 Query: 201 -IGKPIRFRPLT------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQ 253 IG PIR T F+ H + IV +IG + + G A + Sbjct: 119 FIGVPIRSEDRTIGVFCLFKDLNKHEELTRIVDIMLVVSAMIGMSYKLFGILQEEKASWE 178 Query: 254 SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 D IE VG+ + LK I +IA + S+V+++GESG GK ++A+AI Sbjct: 179 EQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAI 238 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H LS R++KPFI++NCAAIPE LLE+ELFGY KGAFTGA + K G + AN GT+FLDE Sbjct: 239 HTLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAV-HSKKGKFELANGGTIFLDE 297 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG++PL Q+KLLR I+ +E+ +GA I V++R+I++TN++LA +A G+FREDL+YR Sbjct: 298 IGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYR 357 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNVIPI +P LRER+EDI LLV +FL + I + +E L + WPGN+REL Sbjct: 358 LNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHI-NIEKEAMEALVNYNWPGNIREL 416 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 NL+E LV + + LL + +N L + +E EK Sbjct: 417 ENLIERLVVINNKDITKEDVLLATKINSN----------------KLQTDIPSIIESTEK 460 Query: 554 QMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 + I++AL + K + A LG+ + L +IKKY + Sbjct: 461 EAIKKALEKCGYVKSKAAKILGLTLRQLDYRIKKYNI 497 >UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WJF2_BACSK Length = 511 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 159/463 (34%), Positives = 244/463 (52%), Gaps = 40/463 (8%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF---- 207 + TM++ MD V +VD+E R+ +N + + + I GKP+R Sbjct: 64 LEELKRTNAFLQTMMEAMDDAVTMVDEEQRIIQINAKSEQLYALTSCAIAGKPLRDYFDE 123 Query: 208 ------------RPLTFESNFTHGHMQHIVS--WDDKSELIIGQLHNIQGRQLFLMAFHQ 253 +P+ + N + IV+ + E +G L I+ ++ ++ Sbjct: 124 EALVLWSVMKDKQPVVHQYNQPKPGLHVIVNTVPVFEGEACVGGLS-IERDITDVVRLNE 182 Query: 254 SHTSFS-----VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 +S + + ++ ++++G +R+ L +++A + ++V++ GESG GKE+ Sbjct: 183 ELSSKTASLHHLNTTSEDEPFQKIIGRSEPIRRAIHLAAKVAKTTANVLITGESGVGKEL 242 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A IH+ S R KPFIAINC AIP L ESELFGYV+GAFTGA+ GK G + AA GT Sbjct: 243 FAEGIHQASDRAEKPFIAINCGAIPAALFESELFGYVQGAFTGAAKGGKKGKLDAAKGGT 302 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDE+G+MP LQ KLLR +E R +G I +D+RI++ATN++L + +AEG+FRE Sbjct: 303 LFLDEVGEMPAELQVKLLRVLEERAYYRVGGHEAIPLDVRIVAATNRDLEKMVAEGRFRE 362 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 D +YRL+VI I++PPLRER ED+ LV FL +R P + P+V+ LR +W G Sbjct: 363 DFYYRLHVISISIPPLRERIEDLPELVQSFLQEFAQRYEKPVPKLDPEVLYALRTQKWEG 422 Query: 489 NLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 N+R+L NL+E +V + E + LP + + + Sbjct: 423 NIRQLRNLIERIVILNGDHEGSVHWYHLPESYQQKLKHMPLASKDKPKKD---------- 472 Query: 548 LEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 E+ I AL + + +K A LGI ATLY K+K Y+L Sbjct: 473 ----ERMEIINALEKTYGNKSAAAKLLGISRATLYNKLKHYKL 511 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 138/346 (39%), Positives = 205/346 (59%), Gaps = 15/346 (4%) Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIE-QLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + ++ +HT S + + P + +VG+ MR L I+ +APS ++V++ GE Sbjct: 111 DKLQLTLSEALAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGE 170 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+VARA+H S R +P + +NCAA+ E LLESELFG+ KGAFTGA + G Sbjct: 171 SGTGKELVARALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKR-REGRF 229 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 A+ GTLFLDEIGD+ ++Q +LLRAI+ RE+ +G++ + VD+R+I+AT+++LA+ + Sbjct: 230 VEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEV 289 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 + G+FR+DL+YRLNV+ I +PPLR R+EDI L YFL + R G P +++L Sbjct: 290 SAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLL 349 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 + WPGN+REL N +E V ++ +GE I LP + + Sbjct: 350 IHYAWPGNIRELENAVERAVVLL-TGEYISERELPLAITGTPVADAPHG----------- 397 Query: 542 DAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586 D L E+EK+ I AL R +K + A LGI TL K+ + Sbjct: 398 DDSIQPLVEVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 159/463 (34%), Positives = 249/463 (53%), Gaps = 41/463 (8%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG-VVQNNIIGKPIR------------ 206 +I +ID++ GV++ D + R +VN T + +G + ++ GK ++ Sbjct: 38 EITKLIIDHL-DGVVITDAQGRYVYVNDTWSEMMGGIKLEDVKGKYVKDLIPDTKIDFVL 96 Query: 207 --FRPLTFESNFTHGHMQ------HIVSWDDKSELIIGQLHNIQGRQLFLMAFH------ 252 +P+T G + +I ++ + +L+ G +H I + F Sbjct: 97 KTGKPITGHVIIAKGPSKIKSFSTYIPIFNKQGKLVAGFIHVIIKGMENAIDFSFRINSM 156 Query: 253 ----QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + + I+ +VG+ +++LKR I + + + S+V++ GE+G GKE+ Sbjct: 157 ATQLEYYQQELKKIRGAKYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKEL 216 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VA +IH LS R + PF+ +NC+AIP +LLESE FGY +GAFTGA GK G + AN G+ Sbjct: 217 VAHSIHDLSNRDSFPFVKVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGS 276 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEI +PL Q KLLRA++ +EI +G I VD+R+I+A N NL + I E KFR Sbjct: 277 LFLDEINQLPLFSQPKLLRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRS 336 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL--RKHRW 486 DLFYRLNV+ I +PPLR+R+EDI L+V + +LG PGI+ D L + W Sbjct: 337 DLFYRLNVLKIVIPPLRKRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTEVHYDW 396 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E +N GE ++ + +++ + + + Sbjct: 397 PGNIRELQNIVERAMN-SSWGETLEWVHFKDYFRSKNPKFIDKISQNNMSKI------KD 449 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 EE+EK+ I AL SK + A +LGI Y+K+KKYE+ Sbjct: 450 IKEELEKETIINALENSKSKAEAAKKLGISRTAFYKKLKKYEI 492 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 148/443 (33%), Positives = 241/443 (54%), Gaps = 20/443 (4%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH 218 + I +++ G++ +D + F+N A + L + I + + H Sbjct: 193 NSITEEILECTHSGIIAIDKNHSPLFINNQAKRLLFNQVDKFIKDYLTSDDILDSLKNGH 252 Query: 219 GHMQHIVSWDDKS-----------ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 +I+S+ S +L G + IQ + + S + + Sbjct: 253 SLCNNIISFKGLSLTFDCFPIIIDKLHFGCVATIQDIENIQSTEKEIRESLISKSHCAKS 312 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 ++G + + + A S S++++ GESGTGKE+ A++IH S R N PF+AI Sbjct: 313 TFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIHNYSNRFNGPFVAI 372 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIPE +LESELFGYVKGAFTGA GK G+ + A+ GT+FLDEIG++ +Q KLLR Sbjct: 373 NCAAIPENILESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEISKDVQVKLLR 432 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ RE+ IG + + +++R+I+ATN+NL + I FREDLFYRL V+ + LPPLRER Sbjct: 433 VLQEREVTRIGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVLKLDLPPLRER 492 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDIE L + + + + I+ +++L ++ +PGN+R+L N++E LV + Sbjct: 493 KEDIEQLTYSIISHYNK-----PVSISDSALKLLSRYDFPGNIRQLKNIVERLVVMCDDN 547 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-K 566 V L ++L + + D+ + + S + + + EK++I E L ++N K Sbjct: 548 FV--DEHLVSDILISEPHFRKDINLIPAINYSPVLSDNKIV-DYEKKLILETLEKNNGVK 604 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 A++LGI TL+RK+KKY+L Sbjct: 605 SITANQLGISTTTLWRKLKKYKL 627 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 162/498 (32%), Positives = 248/498 (49%), Gaps = 20/498 (4%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + + V V + AV Q+ + L E + S + E + S Sbjct: 142 IKSKGIKVVVGGMPAVLTAQKYGLRGVLVECGEEAIQQSLQEALHIAEVRKIEAARSARL 201 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFESN 215 ++D++ QGV+V ++ N++ N A K + ++GK R + Sbjct: 202 KVILDSITQGVIVTNEHNKIVLYNPAAEKIFDLSSKKVLGKDAFETIPNTRMHNVLESGE 261 Query: 216 FTHGHMQHIVSWDDKSELI--------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 G +Q I + I IG + + + + Sbjct: 262 AEIGVLQDINGGTIATNRIPIEVDGKRIGVVSTFEDITKIQQLEQKIRERIYKKGFVAKY 321 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E ++ M +LK++ A + + +++ GESGTGKE+ A++IH S R N PF+A+ Sbjct: 322 FFEDILTANESMIELKKIADLYAKTDAEILIQGESGTGKELFAQSIHNASTRSNGPFVAV 381 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP+ LLESELFGY GAFTGA GK GL + A+ GT+FLDEIG++ LQA+LLR Sbjct: 382 NCAAIPDNLLESELFGYEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEISKGLQARLLR 441 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 I+ +EI+ +G I +DIRI+SATNQNL + I G+FR+DL+YRLNV I LPPLRER Sbjct: 442 VIQEKEIMRVGGDKVIPIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFNIILPPLRER 501 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI L+ + L + + ++ +L ++ WPGN+RE +N++E L V Sbjct: 502 KEDISLIANKLLKKFAENYDIDFNKVIKEINPLLIEYDWPGNIREFNNIIERLALVA--- 558 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SK 566 V + L + E ++L + A++E EK +I L +++ K Sbjct: 559 -VQTKSHNWAETLRKVMHTVEAMDEHIVVKVNLKNGLKDAVKEFEKYIINSMLLKYDQDK 617 Query: 567 KQVADELGIGIATLYRKI 584 +V EL IG AT +RKI Sbjct: 618 DKVIKELKIGRATFWRKI 635 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 152/509 (29%), Positives = 252/509 (49%), Gaps = 29/509 (5%) Query: 106 QDRCVGVISLIAVTHEQQEHISDNLREFSDY--VRHISTIFVSKLLEDQGPG--DNISKI 161 + + V+ L+ + + + ++ V ++ ++L + + Sbjct: 191 DGKVIAVLILLQKLGDDPWDLDLHNLQYLTLGWVTSLAMEIKTQLNLKLSNSLFKSTNTA 250 Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI--------RFRPLTFE 213 T I M +G+++V E +Q +N A + N IG+ I + Sbjct: 251 LQTAIKMMTEGMVIVSREGLIQHINSPAAQIFNCNTNEAIGRNIMEFLVKNDALAEALRQ 310 Query: 214 SNFTHGHMQHIVSWDDKSELIIG-------QLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 H +++ + G + + S + A + Sbjct: 311 LKMIHNIEVEVLNDYGTQGYTFSIQPLPADSSGSSGGVVKIVDTEKAKNMVSSSSGAKLD 370 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 + + G M + K L R A SP++++++GESGTGKE+ A+AIH R + PFI Sbjct: 371 FDFQSIKGASTKMLRTKSLAQRFARSPANILLIGESGTGKELFAQAIHNE-YRPSGPFIV 429 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAAIP+ L+ESELFGY GAFTGA NG G I+ A GTLFLDEIGDMP+ +QA LL Sbjct: 430 LNCAAIPKNLIESELFGYDSGAFTGAKKNGSPGKIELAEGGTLFLDEIGDMPIEIQAVLL 489 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E ++++ IG S VD R+++ATN++LA + G+FR+DL+YRL+V+ + +PPLR+ Sbjct: 490 RVLENKQVMRIGGSKYRAVDFRMVAATNKDLATLVQSGQFRQDLYYRLSVLRVDIPPLRQ 549 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R D+ L +F+ + R S P ++ + L ++ WPGN+R+L N + Y +NV Sbjct: 550 RDSDVLSLAEFFIQKYNWR--SKLPKLSHETKIKLMEYTWPGNVRQLENAIIYALNV-SE 606 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT-----ALEEMEKQMIREALS 561 E+I LP +++N S E + +L+E EK +++ AL+ Sbjct: 607 DELILPEHLPDEIIHNKNHPASLSLNPIELSKENNLNEAELRDVVSLKEAEKIVVQNALA 666 Query: 562 RHNSKK-QVADELGIGIATLYRKIKKYEL 589 + + A+ LG+ +TLYRK+K + Sbjct: 667 KSGNNICIAAELLGLSKSTLYRKLKLLGI 695 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 +WDD + ++ + + EP ++VG M++L Sbjct: 273 TWDDNALTLLVCAAQLLDAMGESATERSQLRAALSQRGSIEPG--RVVGSSPQMKKLHVF 330 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 + R+A + ++V+V GESGTGKE+ AR IH S R +PF+AINCAA+PE LLESE FG+ Sbjct: 331 LERVAATNATVLVNGESGTGKELAARMIHARSPRAERPFVAINCAAVPENLLESEFFGHE 390 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA A G+ + A+TGTLFLDEI +M QA++LR +E R +G + ++V Sbjct: 391 KGAFTGAVAR-HQGVFERAHTGTLFLDEIAEMAPATQARMLRVLENRSFTRVGGTEEVKV 449 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+R+++AT+++L + +A+G+FREDL YRL+VI LPPLRER+ DI LV +F + Sbjct: 450 DVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPPLRERRGDIPELVRHFCSVLGDD 509 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTT 525 +G +A D + +L +RWPGN+REL N++E + V+ G V++ LPP L + G Sbjct: 510 MGRHVETVADDALAVLVNYRWPGNVRELRNVVERAL-VLGDGPVLELDDLPPELQHAGPH 568 Query: 526 EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKI 584 + + L E+E+Q I AL K + A LGI TLYRK+ Sbjct: 569 PDQPGASPVVSPQKV-----LPLAELEQQAIAAALEATGGNKARAAALLGIDRTTLYRKL 623 Query: 585 K 585 K Sbjct: 624 K 624 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 159/443 (35%), Positives = 240/443 (54%), Gaps = 24/443 (5%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----IRFRPLTFESNFT 217 +++ +G+ V D + + N+ ++ + + I + L + Sbjct: 119 LNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPWTNLQQAIDRG 178 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV----------ANAPDEP 267 ++S D ++ ++ R L ++ + Sbjct: 179 KTFSTEVLSPDGQALRLVFLPIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQQGTARY 238 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 I +VG +++ + K L +R A S S+V++ GESGTGKE+ A AIH +S RR F+ + Sbjct: 239 SINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRKGSFVKV 298 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+PE LLESELFGY +GAFTGA GK G + AN GT+FLDEI DM L +QAKLLR Sbjct: 299 NCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSMQAKLLR 358 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E+ IG+ S +V+IR+I+ATNQNLA+ ++E KFREDLFYRLNVI + L PLR+R Sbjct: 359 VLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNLLPLRQR 418 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LL H+ LH + LG+ I P+V++ + WPGN+REL N +E VN G Sbjct: 419 VDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAVNFC-EG 477 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 I +P N++ ++ + + +H SLD+ G EK +I E L +K Sbjct: 478 NTITINDIPDNIIQR----KNHYSSTTGSHSSLDNILGKQ----EKALIEEVLKNCGGNK 529 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A L I + LYRK+ KY++ Sbjct: 530 SKAAKTLNIHRSVLYRKLHKYDI 552 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE 213 + + ++ N+D+G+L+ D + F N+ A K LG+ N I+G+ + Sbjct: 6 ELHSHDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLKPHLT 65 Query: 214 SNFTHGHMQHIVS 226 + + IV Sbjct: 66 FDNIIKDQRRIVK 78 >UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=A5GDL0_GEOUR Length = 591 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 158/598 (26%), Positives = 278/598 (46%), Gaps = 62/598 (10%) Query: 22 RMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFD 81 + L + + + V V+ + + + + G L VL KVV + R Sbjct: 27 QALVNAMGVGVLAVNTSGMTILANKSARENFGAY---PGIHLNDVLPELWPKVVQRLRKH 83 Query: 82 PLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIS 141 + +P++L VG + + + +E + + Sbjct: 84 THSIEVSVRGGEANYLVRVSPILLDKEQVGAVCVFVESTGLEEMAM----QMQTF----- 134 Query: 142 TIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII 201 ++ +I++ G+ + D + V +N + + + +++ Sbjct: 135 --------------QELTSELGAIINSSSDGLWICDSQANVLRINPASERINHIKAEDVV 180 Query: 202 GKPIRF--------RPLTFESNFTHGHMQHIVSWDDKSELIIGQ-LHNIQGRQLFLMAFH 252 G +R + T E T + + + ++ G + + GR + ++ Sbjct: 181 GHNMRDLVAEGVFDKSATLEVLRTGNVANMLQQREGRKLILTGTPVFDTAGRLIRVVVSE 240 Query: 253 QSHTSFSV--------------------ANAPDEPHIEQLVGECRVMRQLKRLISRIAPS 292 + T + E +++ VM + +++ Sbjct: 241 RDITEIDILQRELEEQEAMKDQFRHHMIEKQQVELESHRVIARSPVMLKALHQAIKVSTV 300 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 SSV+++GESG GK ++A IHK S R KP I INC AIPE L+ESELFGY KGAFTGA Sbjct: 301 DSSVLILGESGVGKGLIADLIHKNSLRAKKPLIKINCGAIPESLIESELFGYEKGAFTGA 360 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 A GK G + A+ GTLFLDEI ++PL Q KLLR +E I +G ++ VD+RI++A Sbjct: 361 QAGGKPGYFELADGGTLFLDEIAELPLSSQVKLLRFLEDGRITRLGGTNGRTVDVRILAA 420 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 T++NL + +++GKFR DL+YRL VIPI +P +RER++ I L+H+++ + G Sbjct: 421 THRNLEEMVSQGKFRLDLYYRLKVIPIYVPSVRERKDCILPLIHHYIDFFGTKTGIK-KR 479 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 + +IL + +PGN+REL N+ E LV V+ E+ID LP +++ Sbjct: 480 LTRAASDILMSYPYPGNVRELMNICERLV-VMSEMELIDLKDLPGDIVARVEETGKASMA 538 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 E + + A++ +E+ ++ +A+ R+ ++ ++A+ LG+ +T+ RK+KKY L Sbjct: 539 WPE-----EMSLQQAIDSVERNVLAQAVERYGNQCRMAEVLGVNQSTIARKLKKYGLT 591 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 141/345 (40%), Positives = 209/345 (60%), Gaps = 21/345 (6%) Query: 265 DEPHIEQ--LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 D+P E+ LVG M +L+++I R+AP+ ++V++ GESGTGKE+VAR ++ S RR++ Sbjct: 133 DDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQ 192 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 FI +NCAAI E L+ESE FG+ +GAFTGA+ + G + A+ GTL LDE+ ++P LQ Sbjct: 193 AFIKVNCAAISENLIESEFFGHERGAFTGATER-REGRFELAHQGTLLLDEVSEIPANLQ 251 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ RE +G S I+V++RII+ +N++L + + +G+FR+DL+YRLNV P+ +P Sbjct: 252 AKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVP 311 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 LRER EDI LL +FL R+ G G A L +RWPGN+REL N +E V Sbjct: 312 ALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQNTVERAVI 371 Query: 503 VVPSGEVID------STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA--------- 547 + +G + P L +V + A ++ + AG + Sbjct: 372 LSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQV 431 Query: 548 --LEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 L+E+EKQ IR AL + ++ Q A ELGI I TL K+++Y L Sbjct: 432 LKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 >UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424F3 Length = 475 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 32/458 (6%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI---------------- 205 ++ +++ D E V + L GV N I+G+ + Sbjct: 12 LQAILKGSKDNIVITDGEGNVLKASPNCLDIYGVEFNQILGRSVYDLEKEDIFSPSITVR 71 Query: 206 ------RFRPLTFESNFTHGHMQHIVSWDDKSELI--IGQLHNIQGRQLFLMAFHQSHTS 257 + L + +++ ELI I +++ + +H Sbjct: 72 VLNEKKECQVLQHTKGERTVLATGMPVFNENGELIRVISFSYDLTEIEELRENYHTLQER 131 Query: 258 FSVANAPDEPHIE------QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + E +E ++ + + ++++ L+ R++ S ++V+ +GESG GK V AR Sbjct: 132 MGLYESQIEELLEKEEQDRDVILKSKAIKRVWELVKRVSDSEATVVFLGESGVGKNVFAR 191 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 A+H S R +KPFI +NC+AIPE L ESE+FGY G+FTGA GK G+I+ A+ GTLFL Sbjct: 192 ALHNGSSRASKPFIEVNCSAIPEALFESEMFGYESGSFTGAHKKGKPGMIELADGGTLFL 251 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIG++PL +QAKLL+ ++ + + +G P ++D R+I++TNQNL + G FR+DL+ Sbjct: 252 DEIGELPLSMQAKLLKVLQEKTVTRVGGLKPHKIDFRLIASTNQNLEEMARSGSFRQDLY 311 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL+VIPI +PPLR+R++DI LL+ ++LH ++ V+ + ++ L + WPGN+R Sbjct: 312 YRLHVIPIEIPPLRKRKDDILLLIQHYLHSFNQKYN-VHKHLQALALDELLAYHWPGNVR 370 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N ME LV + + I+ + LP + + T A+ ++ Sbjct: 371 ELENTMERLV-LTSEKDRIEISDLPLLIHKQQHNSIEESTASQSNEAINASTYKEAMAQV 429 Query: 552 EKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 EK + A+ + + ++A+ LG+ +T+ RK+ KY L Sbjct: 430 EKHWLEHAIKQCKTTYEMAELLGLSQSTVVRKLHKYNL 467 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 150/534 (28%), Positives = 266/534 (49%), Gaps = 53/534 (9%) Query: 64 RHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFL-GTPVILQDRCVGVISLIAVTHEQ 122 + +L+ K +C C K E+ + + S+ + + Sbjct: 30 KKLLDVKENDFCK--GLFSICNSCPLKLVLEERESVQVYDIKTNTDVHACWSMSPLFNGD 87 Query: 123 QEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRV 182 + + + +S + T+++++ + +LV+D+ + Sbjct: 88 K------CEGVVEVFKDVSNVVSC-----ILESQRQKTYKETILNSIVEAILVLDENGYI 136 Query: 183 QFVNQTALKTL-GVVQNNIIGKPIR-FRPLTFESNFTHGHMQHIV----SWDDKSELIIG 236 N A K L + ++IG+ I+ L+ E G + K+ ++ Sbjct: 137 VEHNNIAKKMLCRTSEESLIGRHIKELVNLSLEEFPPQGERTDVYIETPCGRQKASTLVS 196 Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 ++ G + Q + SF ++ + + +++ L+ + +V Sbjct: 197 PMNLGFGYVVSFYVIQQDNMSFC-------DKLDYIFTKSPTFQKVLDLVKSCSEHNVNV 249 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+G GK ++A+ IH LS RR+ PF+ +NCAAIPE LLE+ELFGYVKGAFTGA+ + Sbjct: 250 LIEGETGIGKSLLAKYIHLLSPRRDAPFVKVNCAAIPENLLEAELFGYVKGAFTGATKD- 308 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A+ GTLFLDEIGDMPL LQAK+L +E +E +G+++P + + RII++TN++ Sbjct: 309 KPGKAEIADGGTLFLDEIGDMPLSLQAKILHLVEEKEFERLGSNTPRKTNTRIIASTNKD 368 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 + + + +G+FREDL+YRL+V+ I LPPLRER+EDI LL++ F+ +++ I+ D Sbjct: 369 IKELMRQGRFREDLYYRLSVVNIYLPPLRERKEDIPLLINNFIEKYSKLYSKRVKSISGD 428 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 +++L + +PGN+REL +++E V + G +I+ + + +N +Q Sbjct: 429 AIKMLLGYDFPGNIRELEHIIEKAV-ITCRGSIINIEDISLDFQSNNHKQQE-------- 479 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 EK+ I+ L + N +K A LGI TL+RK+K+ + Sbjct: 480 ---------------EKERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 137/329 (41%), Positives = 204/329 (62%), Gaps = 17/329 (5%) Query: 262 NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRN 321 + +++GE M++L IS IAPS +++++ GESGTGKE+VA AIH+ S R+ Sbjct: 130 EPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKE 189 Query: 322 KPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLML 381 I INCAA+ E LLESELFG+ GAFTGA+ K GL + A+ GTLFLDEIGDM L Sbjct: 190 GALIRINCAALHENLLESELFGHELGAFTGAAKQ-KKGLFERADKGTLFLDEIGDMSLTT 248 Query: 382 QAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITL 441 Q K+LR ++ E +G + I+V++RII+A+++NL + I EG FR+DLF+RL+V+P+ L Sbjct: 249 QVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHL 308 Query: 442 PPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV 501 P LRER DI +L ++FL L+ ++ G + + +++L ++ WPGN+REL N +E V Sbjct: 309 PALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGV 368 Query: 502 NVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS 561 ++ GE I + LPP N + + + L ++EK+ I++AL+ Sbjct: 369 -ILCLGEQITAHELPPQFFRNRSPG--------------ELSSRDTLRDVEKRAIQQALA 413 Query: 562 RHN-SKKQVADELGIGIATLYRKIKKYEL 589 R +K A +LGI TL KI+ Y L Sbjct: 414 RSGFNKSATAKQLGIARQTLLNKIRDYGL 442 >UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5 Tax=Geobacillus RepID=A4IJQ7_GEOTN Length = 689 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 143/506 (28%), Positives = 251/506 (49%), Gaps = 50/506 (9%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 +P+I + + VG + + E +++ H + I Sbjct: 205 SPIIDEGQVVGAVGVFQDISE------------IEFISH-----------ELETVKQIVN 241 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRPLTFESNFTHG 219 T++D G+ ++D + N+ +++ + P+ R F+S + Sbjct: 242 ELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSCS 301 Query: 220 HMQH--------------IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 + I+ + ++E ++ + ++ + + ++ + + Sbjct: 302 MLHQGAETGNTLIVSAVPIIEKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKE 361 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + L+ M + + + A +V++ GESGTGKE +A I + S R N+PF+ Sbjct: 362 ----DGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEELANFIWRQSARSNRPFV 417 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 +NC AIPE L+ESELFGY GAFTGA GK G + A+ GT+FLDEI ++PL LQ KL Sbjct: 418 KVNCGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKL 477 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR +++ EI+ +GA +P Q+D+R+I+ATN+ L + + G+FR DLFYRLNV+PI +PPLR Sbjct: 478 LRVLQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLR 537 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 +R+EDI LLV ++ + +E + + WPGN+REL N +E + V Sbjct: 538 DRKEDIPLLVDHYRKRFAEKYQKPLV-FTDRALEAMMDYHWPGNVRELVNAVERMF-VTA 595 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 + ++D + L +S + A+ E+E+Q++ +AL++ + Sbjct: 596 TSSIVDEDQVAKWL------HLEPSPTISPVAIGEIIPLKQAVAEVERQLMIKALNKART 649 Query: 566 KKQVADELGIGIATLYRKIKKYELLN 591 +Q A LG+ +TL RK +KY++ + Sbjct: 650 YRQAAKLLGVDASTLVRKAQKYKIKS 675 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 138 RHISTIFVSKLLEDQGPGDNI-SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV 196 R + + + LE + K + + G++ +D E R+ +N A K Sbjct: 102 RLVGVLTKGQYLEAYAKAVQLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTT 161 Query: 197 QNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELI-IGQLHNIQGRQLFLMAFHQSH 255 + IG+ + G + + + + +E +G+ I R + + Sbjct: 162 KEEAIGR------FLTDVVIPSGLLDVVRTGEGHTEKYRVGKRIYITNRSPII---DEGQ 212 Query: 256 TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRI--APSP 293 +V D IE + E ++Q+ + + A S Sbjct: 213 VVGAVGVFQDISEIEFISHELETVKQIVNELQTVMDAASD 252 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 150/464 (32%), Positives = 241/464 (51%), Gaps = 23/464 (4%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 ++++ Q ++ T++ + GV+ +D+ ++ +N +A + +IGK Sbjct: 184 AQRIIKVQDKEKKSAEQLRTILSFIHDGVIAIDNTGKITVINPSAESIFKLKNTQVIGKN 243 Query: 205 IR---------------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM 249 I+ + N G + + + I+G + + Sbjct: 244 IKQVIPNTKMLDVLKHGKAEIEQLQNTPSGMVVTNRVPIEINGEIMGVVATFKEAGRIQQ 303 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + T + E ++ MR++ R A + +V++ ESG GKE+ Sbjct: 304 TEQKIRTKLYSQGLYAKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELF 363 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A++IH+ S R PF+AINC+A+P QLLESELFGYV+GAFTGA GK GLI+ A+ GTL Sbjct: 364 AQSIHQASSRCRGPFVAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAHGGTL 423 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGDM L LQA+LLR +E R+++ +GA + VDIRI++ATN L Q + G+FR D Sbjct: 424 FLDEIGDMELTLQARLLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMD 483 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 LF+RLNV+ +++PPLR R+EDI L YFL + G + +IL ++ WPGN Sbjct: 484 LFHRLNVLNLSIPPLRHRREDIIPLAEYFLAEFANKYGQRPIELTAAAKDILLRYSWPGN 543 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH------LSLDDA 543 +REL N+ME + V + + + +L L N+ SD + + A Sbjct: 544 VRELRNIMERISLVYEEAQDVSA-ILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPERFL 602 Query: 544 GGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586 ++ +M++Q+ L+ +K + A +LGI ATL R +++ Sbjct: 603 LPQSIRDMKRQLAISTLAACGGNKSKAAKQLGITRATLDRLLRQ 646 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 152/429 (35%), Positives = 222/429 (51%), Gaps = 15/429 (3%) Query: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDK 230 Q VL D+ R+ VN G V N ++GK ++ +S Sbjct: 133 QAVLFDDEGKRLNAVNSK-----GDVNNQLLGKVSEAAKECMKAQKPVLGKSTFISGASA 187 Query: 231 SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIA 290 + I + +Q + + ++GE + MR+ K L A Sbjct: 188 VRIPITKEIGFGFNNEDTALKNQKLLEEVKKYQTAKYNFTDIIGESQQMRKAKELGEAAA 247 Query: 291 PSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT 350 S SSV++ GE+GTGKE+ A++IH S R +KPFIAINCAA+P L+ES LFGYV+GAFT Sbjct: 248 SSDSSVLICGETGTGKELFAQSIHNASYRCSKPFIAINCAALPPSLIESNLFGYVEGAFT 307 Query: 351 GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRII 410 GA G TG+ + AN GTLFLDEI +M L LQ+KLLR ++ +E+ IG I +++RII Sbjct: 308 GAKKGGATGVFEKANNGTLFLDEISEMDLDLQSKLLRVLQEKEVTRIGGRKVIPLNLRII 367 Query: 411 SATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVY 470 +ATN+NL I +G+FR DLF+RLNVI + LPPLR+ +EDI LLV+ + G Sbjct: 368 AATNRNLEDMIQKGQFRRDLFFRLNVIEVKLPPLRDMKEDIPLLVNETIIKMNSIFGKAI 427 Query: 471 PGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG------- 523 G+ + +E+L + WPGN+REL N +E N++ I L N Sbjct: 428 KGVDKEALEMLINYDWPGNVRELYNCIERAFNLIGDDNYIRKKHLNFKFNNGNGITAQNY 487 Query: 524 --TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATL 580 E ++ ++ + + + + EKQ+I L + + A L I ATL Sbjct: 488 MEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQVIEAVLKEVKGIRAKAAKRLNISPATL 547 Query: 581 YRKIKKYEL 589 +RK+KK + Sbjct: 548 WRKMKKLNI 556 >UniRef50_C6BSU4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=C6BSU4_DESAD Length = 454 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 151/449 (33%), Positives = 236/449 (52%), Gaps = 28/449 (6%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------------------- 205 +++ + G+ V+D E RV+ VN+ G + + G Sbjct: 10 LLNEVPIGIAVLDIEGRVKLVNRAWQTITGADPDAMQGLKCYLGLRCDYCFKGCPVMADK 69 Query: 206 -RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP 264 F+ ++ +++ + V I+ + I G + Q S A+ Sbjct: 70 ADFQTVSVDADII-DRTRTKVPIRLNISPIVNSDNVISGYIETIQDIRQVAELSSTASKA 128 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + L+G M ++ ++ IA + SSV++ GE+GTGK+V+A AIH S R PF Sbjct: 129 --YSLGGLIGTSPEMVKIFSMVPSIAATDSSVLITGETGTGKDVLAEAIHNASDRAGAPF 186 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 I +NC A+PE LLESELFG+VKGA+TGA+ + + G I+ A+ G+ FL EIGD+PL LQ K Sbjct: 187 IKVNCGALPETLLESELFGHVKGAYTGANED-RPGRIKLAHNGSFFLTEIGDLPLPLQVK 245 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LL ++ + I P+G+S D+R+I AT+++L + + E FR DL +RLNV+ + LPPL Sbjct: 246 LLSFLDDKVIHPLGSSRGFNADVRVIVATHRDLKKMVHEKTFRADLLFRLNVVHLHLPPL 305 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER +DI LL ++FL + + G + +IL +R+PGN+RELSN++EY VN Sbjct: 306 RERGDDILLLKNHFLMEYCNKFNKKIKGFSKKSAKILSAYRYPGNVRELSNIVEYAVNFC 365 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQ--SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 ++I S LP L E L+ + ++ EKQMI + L + Sbjct: 366 DR-DLIGSAHLPAYLTEQDILRPVTESAHAAQERTAPLEYSSAQNWDDAEKQMIMDTLLK 424 Query: 563 HNSKK-QVADELGIGIATLYRKIKKYELL 590 +K + A LG ATL+RK+KK+ + Sbjct: 425 CGGRKGEAASRLGWSRATLWRKMKKHSIT 453 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 152/441 (34%), Positives = 236/441 (53%), Gaps = 30/441 (6%) Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-RFRP-LTFESNFT 217 + ++ ++ VL VD ++R+ VN + + L ++G+P+ R RP LT Sbjct: 205 EQLNGVLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAMVGQPLDRLRPELTLRPTLD 264 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA---------FHQSHTSFSVANAP---- 264 G + + I+ R + A H++ TS V Sbjct: 265 TGQPESAGLLRLGGRDWLANRMPIRERGAVVGAALTLYDAGRIHEADTSLRVQQRRRQNT 324 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + +L+G + R R A + +V++ GESG GKE+ A+AIH S R ++PF Sbjct: 325 AKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKELFAQAIHNESRRADRPF 384 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +A+NCA+ PE LLESELFGY +GAFTG+ GK GL +AA+TGTLFLDEIGDMPL LQ++ Sbjct: 385 VAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGDMPLPLQSR 444 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ RE+ +GA++ I VD+RII+AT+Q L+ +A+ +FR+DL+YR+N + + +PPL Sbjct: 445 LLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQDLYYRINTLRLEVPPL 504 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYP--GIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 RER +DI+ L+ + RRLG+ G+ + LR++ WPGN+REL N+ E + Sbjct: 505 RERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPWLPRLRRYAWPGNVRELENISERMAV 564 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + P + + D E+ EA ++ G + ++ AL Sbjct: 565 FLMQ--------YPHAADVDHDALRHDCPELFEAGAAVAADEGRS----QRDRALRALEA 612 Query: 563 HNSKKQ-VADELGIGIATLYR 582 +Q A LGI +TL+R Sbjct: 613 CGGNRQEAARRLGISRSTLWR 633 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 206/346 (59%), Gaps = 10/346 (2%) Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 +L + + + + E ++GE M+ + + ++ + ++V + GE+GT Sbjct: 348 RLKVAEERLRGENTYLKRREENLRFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGT 407 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE++A AIH S RR+K F+A NCAA+PE LLESELFG+ KGAFT A + K GL + A Sbjct: 408 GKELIATAIHYESNRRDKMFVAQNCAALPENLLESELFGHKKGAFTSADTD-KKGLFEIA 466 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDEIG+MPL LQAK+LR ++ I P+G++ QVD RII ATN++LA + +G Sbjct: 467 DGGTLFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKG 526 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FR+DL+YRL V PI LPPLRER+EDI L +FL ++R G + + ++++ + Sbjct: 527 SFRQDLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTY 586 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 +WPGN+REL N ++ LV +G I+ + L P L V Sbjct: 587 QWPGNIRELENEVQRLVIQTDAGSWIEVSELSPRLRK--------VEGTLARIAPKKGTL 638 Query: 545 GTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 +E++E+ ++ EAL H N+K + A LGI L++K+ KY + Sbjct: 639 KAMMEQVERWLLAEALREHDNNKTRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 147/445 (33%), Positives = 230/445 (51%), Gaps = 34/445 (7%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR----------PLTFE 213 + D++ +GV +D R+ NQ A + G + +GK R P+ Sbjct: 128 AVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEALGKQCRDIFRSDLCERGCPMRQA 187 Query: 214 SNFTHGHMQHIVSWDDKSE------LIIGQLHNIQGRQLFLMAFHQSHT-SFSVANAPDE 266 M V DK + + L N G+ + + + T + + + D+ Sbjct: 188 IESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQLVGAVETFRCLTDEYHLPSLADK 247 Query: 267 PH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + +VG+ VMR+L +++ +A S +SV++ GESGTGKE+ ARAIH LS PF+ Sbjct: 248 TGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGESGTGKEIFARAIHSLSPSSKGPFV 307 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 A+NC+AI E L+E+E FG+ KG+FTGA + G + A GT+FLDE+ ++ Q KL Sbjct: 308 AVNCSAIAESLIEAEFFGHEKGSFTGAD-QSRAGRFEVAKGGTIFLDEVAELRPEHQVKL 366 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR +E + +G + I ++ R+ISATN ++ + E FREDL+YRL +P+ LPPLR Sbjct: 367 LRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLEERTFREDLYYRLRTVPMHLPPLR 426 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER EDI LLV +F+ + ++ + P V+ ++ WPGN+REL +MEY V Sbjct: 427 ERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFMEYHWPGNVRELERVMEYAYVFV- 485 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G VI LP T E+ S +D+ E E++ I AL + Sbjct: 486 KGPVIMMKHLP-------TIEEFAAKRKSGIPQDIDE------EASERRAILRALEKAGG 532 Query: 566 KKQ-VADELGIGIATLYRKIKKYEL 589 K+Q A+ LG+ +L+R++K + Sbjct: 533 KRQEAANLLGMSRTSLWRRMKSLGM 557 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 14/402 (3%) Query: 189 ALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFL 248 A + L + + PI + + V D+ ++ + + + + + Sbjct: 108 ARRFLNRSELAFLCVPIIYDNRVV-GVLSADKAARQVEDLDRELAMLSSISELIAKSVHI 166 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 A + + +++G RVM+++ LI+++A S ++V++ GE+GTGKE+ Sbjct: 167 RALEEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKEL 226 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VARAIH S R P I +NCAA+P+ L+ESELFG+ KGAFTGA + + G + A+ GT Sbjct: 227 VARAIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGAL-HARRGRFEEAHGGT 285 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 +FLDE+G++ QAKLLR I+ ++ P+GAS + VD+RII+ATN+NL + +A G FR Sbjct: 286 IFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRA 345 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV PI LPPLRER DI LL YF+ + + +G I+ V+E H WPG Sbjct: 346 DLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPG 405 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N +E V ++ +G+ I++ LPP+L E + Sbjct: 406 NVRELENCIERAV-LLATGDSIETLHLPPSLQ----------IRSREGEKKESGKFNAMI 454 Query: 549 EEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 E E+ MI +AL H ++ Q A LG + KI+K+ + Sbjct: 455 ESQERAMIVDALKESHGNQSQAARILGTTKRIIQYKIQKFGI 496 Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 57 SGNSRLLRHVLETKTEKVVTQSRFDPLCE---GCDSKENCREKAFLGTPVILQDRCVGVI 113 G + V +T V + G N E AFL P+I +R VGV+ Sbjct: 76 PGEG-ITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVPIIYDNRVVGVL 134 Query: 114 SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGV 173 S ++ ++L + IS + + + ++ M+ Sbjct: 135 SA-----DKAARQVEDLDRELAMLSSISELIAKSV--HIRALEEENRRLRHMLGRST--- 184 Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNI-IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSE 232 V D E + ++ + G++ + T H S K Sbjct: 185 -VPDSE--IIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRSSRCKGP 241 Query: 233 LIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQ 271 LI + + F +F+ A E+ Sbjct: 242 LIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEE 280 >UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAE8_9DELT Length = 477 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 234/476 (49%), Gaps = 50/476 (10%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------FR 208 +++ ++D+++ GV + + + VN + G+ + +IGK + Sbjct: 1 MARHLDAILDSIEDGVFIANRDGYALKVNAAYEQLTGMSKAELIGKNVEELKKAGLFNLA 60 Query: 209 PLTFESNFTHGHMQHI-VSWDDKSELIIGQ-LHNIQGRQLFLMAFHQSHTSFSVAN---- 262 P+T E T I V+ D++S I G+ + + G ++ + + T + Sbjct: 61 PITPEIVATGRPASSIQVTRDNRSMTIDGKPVRDPDGTVSLVVLYARDITLMARMRERIS 120 Query: 263 ----------------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + I + E M++L L+ R+A + + +V+GE+G GK Sbjct: 121 RQQELIETYQHQMDFFIREGGGITNFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGK 180 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+ AR IH+ S RR KPF+ ++CA+IPE L+ESELFGY GAFTGA G+ G + A Sbjct: 181 ELFARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEG 240 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIG+MPL+LQ+KLLR ++ RE+ P+G+S + D+R+I+ATN+NL G F Sbjct: 241 GTIFLDEIGEMPLLLQSKLLRVLQDRELTPVGSSRARKTDVRVIAATNRNLEAEARVGTF 300 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R DLF+RL V + +PPLR+R +DI L FL R + +V +L + W Sbjct: 301 RSDLFFRLRVAVLEIPPLRDRPDDILPLARLFLQRFGARYRKRA-AFSLEVERVLAHYNW 359 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL----------------NNGTTEQSDV 530 PGN+REL NL+E LV I + LP + T S Sbjct: 360 PGNVRELENLIEGLVITC--DGEIAADDLPTAMRVKECPLPAAAMGGPGGAMATGGPSPA 417 Query: 531 TEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 +A D L E + A++ + + A LG+ T++RK+KK Sbjct: 418 ASCPDATPDWDRPYKDVLAAFEHDYLERAIAHFGTVGEAARRLGLDRTTIFRKMKK 473 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 23/388 (5%) Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLV-GECRVMR 280 Q + +++ + + ++ + + L + + + + P ++ G +R Sbjct: 652 QDLRRLNEEMRIKVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIR 711 Query: 281 QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340 + + ++A S S+V+V GESGTGKE++A+A+H+ S R KP + +NCAA+ LLESE Sbjct: 712 SVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLVRVNCAALSPSLLESE 771 Query: 341 LFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS 400 LFG+VKGAFTGA + + G + AN GTLFLDEIGD+ L Q KLLR ++ R +G S Sbjct: 772 LFGHVKGAFTGAHED-RVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGS 830 Query: 401 SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460 + VD+R+I+AT+QNL Q I EG FREDL+YRLNVI ITLPPLRER+EDI L YFL Sbjct: 831 ETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLK 890 Query: 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL 520 RLG I PD +E L + WPGN+R+L N++E V V+ EVI LP +LL Sbjct: 891 RTANRLGKRISHIDPDAIEALERAPWPGNIRQLENVIERAV-VLAESEVITMKDLPADLL 949 Query: 521 NNGTTEQSDVTEVSEAHLSLDDAGGTALEEM-----------------EKQMIREALSRH 563 + V E ++ D L E+ E + ++ AL+ Sbjct: 950 EQKKRLPARVFETK--NVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAEC 1007 Query: 564 -NSKKQVADELGIGIATLYRKIKKYELL 590 +K Q A LG+ +T Y K+KKY++ Sbjct: 1008 DGNKAQAARLLGMPRSTYYSKLKKYDIT 1035 >UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACC6_CARHZ Length = 480 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 158/481 (32%), Positives = 252/481 (52%), Gaps = 44/481 (9%) Query: 140 ISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN 199 I+ + D + + ++D++ +G+ + D++ ++++NQ + G+ + Sbjct: 13 IADNKGLSQITDLVLAQKMREELLKILDSLQEGIEIADEKGEIKYINQAFTRITGIEKEE 72 Query: 200 IIGKPI--------------RFRPLTFESNFTHGHMQHIVS------WDDKSE------L 233 IGK I +P+ G +VS D K Sbjct: 73 RIGKNIFEVSPYGALAQAIKLMKPVIGHRTLVGGSKAEVVSNAVPIFIDGKLSGGAVVFQ 132 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSP 293 + + I + +S + + ++G+ + + K++ + A S Sbjct: 133 TVTDILKISEQLSKTQEMLESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSD 192 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 ++V+++GESGTGKE+ A+AIH S R +KPF+ INCAAIPE LLESELFGY KGAFTGA+ Sbjct: 193 ATVLLLGESGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTGAT 252 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 K G + A+ GT+FLDEIGD+ L LQAKLLR +E ++ +G I D+R+I+AT Sbjct: 253 KT-KMGKFELAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIETITTDVRVIAAT 311 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER-QEDIELLVHYFLHLHTRRLGSVYPG 472 N++L + + E KFREDL++RL VI I LPPLR+R +EDI L+ + RR G G Sbjct: 312 NRDLKRMVKERKFREDLYFRLKVIDIELPPLRKRNKEDILLIAENIIGRLNRRFGKKVKG 371 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 + P E+ + + WPGN+REL NL+E + +V E +D ++ Sbjct: 372 LTPKAQELFQNYPWPGNIRELENLLERTIILV-DDEYLDEHHFYGYF-----------SK 419 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYE 588 +E + L ++EK++I AL ++ +KK +A++LGI +A+LY KIK+Y Sbjct: 420 ANEPPVLEKSFPIKKLGDIEKEVISMALEKYGRSLSAKKMIAEKLGISLASLYNKIKRYN 479 Query: 589 L 589 L Sbjct: 480 L 480 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 776 0.0 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 686 0.0 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 683 0.0 UniRef50_B0TS74 Putative sigma54 specific transcriptional regula... 682 0.0 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 675 0.0 UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis ... 673 0.0 UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis ... 671 0.0 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 667 0.0 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 657 0.0 UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=1... 655 0.0 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 653 0.0 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 650 0.0 UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional ... 648 0.0 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 642 0.0 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 641 0.0 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 637 0.0 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 636 0.0 UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-c... 636 0.0 UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium ... 634 e-180 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 630 e-179 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 630 e-179 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 627 e-178 UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Des... 627 e-178 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 593 e-168 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 585 e-165 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 579 e-164 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 579 e-163 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 577 e-163 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 575 e-162 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 575 e-162 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 574 e-162 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 573 e-162 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 572 e-161 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 570 e-161 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 570 e-161 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 568 e-160 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 566 e-160 UniRef50_P26047 Signal-transduction and transcriptional-control ... 564 e-159 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 563 e-159 UniRef50_C5EGG3 Signal-transduction and transcriptional-control ... 563 e-159 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 563 e-159 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 562 e-158 UniRef50_UPI000197326E probable transcriptional regulator n=1 Ta... 561 e-158 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 561 e-158 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 561 e-158 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 561 e-158 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 560 e-158 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 560 e-158 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 559 e-158 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 558 e-157 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 557 e-157 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 556 e-157 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 556 e-156 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 555 e-156 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 555 e-156 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 555 e-156 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 554 e-156 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 552 e-155 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 552 e-155 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 551 e-155 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 551 e-155 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 551 e-155 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 550 e-155 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 550 e-155 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 549 e-154 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 548 e-154 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 548 e-154 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 548 e-154 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 547 e-154 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 547 e-154 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 547 e-154 UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis... 547 e-154 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 545 e-153 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 545 e-153 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 544 e-153 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 543 e-153 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 543 e-153 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 542 e-152 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 541 e-152 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 541 e-152 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 540 e-152 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 540 e-152 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 540 e-152 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 540 e-152 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 540 e-152 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 539 e-152 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 539 e-151 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 539 e-151 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 538 e-151 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 538 e-151 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 538 e-151 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 537 e-151 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 537 e-151 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 536 e-151 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 535 e-150 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 535 e-150 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 535 e-150 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 534 e-150 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 534 e-150 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 533 e-150 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 532 e-149 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 532 e-149 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 531 e-149 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 531 e-149 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 530 e-149 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 530 e-149 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 530 e-149 UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clo... 530 e-149 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 530 e-149 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 530 e-149 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 530 e-149 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 530 e-149 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 529 e-148 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 529 e-148 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 529 e-148 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 529 e-148 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 529 e-148 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 528 e-148 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 528 e-148 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 528 e-148 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 528 e-148 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 528 e-148 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 528 e-148 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 528 e-148 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 527 e-148 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 526 e-148 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 526 e-148 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 526 e-148 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 526 e-147 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 526 e-147 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_Q3A203 Two component signal transduction response regul... 525 e-147 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 525 e-147 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 525 e-147 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 525 e-147 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 523 e-147 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 523 e-147 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 523 e-147 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5... 523 e-146 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 522 e-146 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 522 e-146 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 522 e-146 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 521 e-146 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 521 e-146 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 521 e-146 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 521 e-146 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 521 e-146 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 520 e-146 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 520 e-146 UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearot... 520 e-146 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 519 e-146 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 519 e-145 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 519 e-145 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 519 e-145 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 519 e-145 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 518 e-145 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 518 e-145 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 518 e-145 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 518 e-145 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 518 e-145 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 518 e-145 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 518 e-145 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 517 e-145 UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-bindi... 517 e-145 UniRef50_A5N2U4 Predicted signal transduction and transcriptiona... 517 e-145 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 517 e-145 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 517 e-145 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 516 e-144 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 516 e-144 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 516 e-144 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 516 e-144 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 515 e-144 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 515 e-144 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 515 e-144 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 515 e-144 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 514 e-144 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 514 e-144 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 514 e-144 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 514 e-144 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional r... 514 e-144 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 513 e-144 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 513 e-143 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 513 e-143 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 512 e-143 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 512 e-143 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 512 e-143 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 512 e-143 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 512 e-143 UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 511 e-143 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 511 e-143 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 511 e-143 UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional r... 510 e-143 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 510 e-143 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 510 e-143 UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Ta... 510 e-143 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 510 e-143 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 510 e-143 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 509 e-142 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 509 e-142 UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostri... 509 e-142 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 509 e-142 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 509 e-142 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 509 e-142 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 509 e-142 UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillu... 509 e-142 UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 T... 509 e-142 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 508 e-142 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with ... 508 e-142 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 508 e-142 UniRef50_B8J2Z7 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interact... 508 e-142 UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostri... 508 e-142 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 508 e-142 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 507 e-142 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 507 e-142 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 507 e-142 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 507 e-142 Sequences not found previously or not previously below threshold: >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 776 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 592/592 (100%), Positives = 592/592 (100%) Query: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS Sbjct: 1 MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNS 60 Query: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH Sbjct: 61 RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN Sbjct: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN Sbjct: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN 240 Query: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG Sbjct: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL Sbjct: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF Sbjct: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI Sbjct: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL Sbjct: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT Sbjct: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 210/600 (35%), Positives = 330/600 (55%), Gaps = 32/600 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L +I ++Q + +ASV+ ++V IVD +L R+AGTG Y + +G ++ NS VL Sbjct: 3 LRKIVSSVQNVSEAIASVINVDVTIVDHHLNRIAGTGCYKEQVGEKVDENS-AFGFVLRQ 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 ++ R +C C++ NC E A + P+ ++D+ VGVI LIA EQ+ + N Sbjct: 62 GESLIIENPRQHDICLQCENVGNCMEYAEVCCPIKVKDQIVGVIGLIAFEEEQKTAMIGN 121 Query: 130 LREFSDYVRHISTIFVSKLLEDQ--GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + +++ ++ + SK++E + + K T++D++D+G++ VD ++ N+ Sbjct: 122 QKNLMEFLNKMADLISSKVIEQESTDQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYNK 181 Query: 188 TALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLF 247 A+ + +N + + I+ F+ N + + + + Sbjct: 182 RAIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPI 241 Query: 248 LMAFHQSHTSFSVANAPDEPH-------------IEQLVGECRVMRQLKRLISRIAPSPS 294 + F+ +N D + ++GE ++ ++K + A S S Sbjct: 242 RIGSENFGIVFTFSNISDVLGIINDMTTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSSS 301 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ ARAIH S R KPFI INCAAIPEQLLESELFGY +GAFTGA Sbjct: 302 TVLIQGESGTGKELFARAIHFHSQRCKKPFIPINCAAIPEQLLESELFGYEEGAFTGAKR 361 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK+G + AN GT+FLDEIGDMPL LQ KLLR ++ + I +G I +D RII+ATN Sbjct: 362 GGKSGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATN 421 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++L + EG+FR+DLFYR+NVIP+ +PPLR+R ED+ +LV Y L+ +LG + Sbjct: 422 KDLENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVH 481 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 P V ++ ++WPGN+REL N +EY VN+ G +I LP L T + + Sbjct: 482 PGVFDVFMSYQWPGNVRELENTIEYAVNMCS-GSIIMERDLPKRLSRRQTESKDESFR-- 538 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 G T+++E+E++ + +A++ + KQ A LGIG ATLYRK+K Y + Sbjct: 539 ---------GITSIQELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLKIYGIK 589 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 215/595 (36%), Positives = 327/595 (54%), Gaps = 24/595 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 SVL IQ I +A ++ + +VEI+DE+L R+AGTG Y L ++ N + RH Sbjct: 1 MISVLSNIQDDICNYADAISGITGTDVEIIDESLMRIAGTGKYRHMLNENVAKNGYIYRH 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VL+ + ++ PLC+ C+ C E L P+ L +R +GVI +I T Q++ Sbjct: 61 VLQVRETVLIKNPGEHPLCQLCEKHHYCSEMLDLNAPIFLNNRVIGVIGIICSTQAQRDT 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + + +F ++ I+ + SK+ E ++ F +ID MD+GV+ +D + + Sbjct: 121 LLSQIDKFVTFIEQIAVMISSKVFECLERLRAQETLGAFRRLIDAMDRGVVAIDGKGLIW 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI-- 241 N +A + L + G P+ + + +G + ++ + + ++ + ++ Sbjct: 181 HANHSADRILNR---EVQGLPLT---IETTGDSLYGDEEAWLTLEGQKHHVLCKQISLSS 234 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIE---QLVGECRVMRQLKRLISRIAPSPSSVMV 298 Q M + + P + +L+G M QL+ I +IA S +SV++ Sbjct: 235 QDNDRLTMIIFRDAHDYLSNLTPSPYESDMQVRLIGHSPSMEQLRSTIGKIANSYASVLI 294 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESG+GKEVVA AIH+ S R+ PF+ INCAAIPEQLLESELFGYV+GAF+GA G+ Sbjct: 295 TGESGSGKEVVAFAIHQSSPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGADPKGRM 354 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN G+LFLDEIGDMPL LQAKLLR ++ + I +G+++ I +D+RII+ATN+N+ Sbjct: 355 GKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAATNKNIN 414 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + +FREDLFYRLNV+P+ LP LRER+ DI +L YF + + DV+ Sbjct: 415 AMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQKLPDDVI 474 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 L WPGN+REL N++EY+ + I+++ LPP LL ++ +T Sbjct: 475 NRLYAWHWPGNIRELRNVIEYIFVMRGEAAGINASHLPPYLLTAADGRKTTMTAQPRQLA 534 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 S ++ E++ I + R KKQ A ELGI IATLYRKIK Y L Sbjct: 535 SKG-------KQAEREAIENVIQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_B0TS74 Putative sigma54 specific transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=B0TS74_SHEHH Length = 555 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 299/564 (53%), Positives = 403/564 (71%), Gaps = 10/564 (1%) Query: 27 VLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEG 86 +LQL+ E+VD +L R+AGTG Y K LG++L+ +SR+ R+++ETK KVV ++R DP+CEG Sbjct: 1 MLQLDAEVVDADLVRIAGTGPYNKSLGKKLNNSSRIFRYIIETKQSKVVVKTRSDPICEG 60 Query: 87 CDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 C + +NCRE AFLG P++L DRC+GV+SL+A E + I +N++ F DY+ HIS + V Sbjct: 61 CSNHDNCRETAFLGVPIMLDDRCIGVVSLVAFNQESGDRIKNNIQLFLDYIEHISQLVVI 120 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 K+ E + G N+ ++F+ +I+NMDQGVLV+DD NRV N AL L + + + + Sbjct: 121 KVSEAKKNGSNLDEVFSNLINNMDQGVLVLDDANRVLHGNPQALDILNISHSELALIEVN 180 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 +PL +N G QHIV+ + EL++GQ H I +QLFLM+FHQ +TS + + P Sbjct: 181 IQPLLPHNNKLKGPEQHIVTLGECQELVVGQFHVIANKQLFLMSFHQPNTSITADDTPAS 240 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 P ++GE M QLK LI+R+A SPSS+++ GESGTGKEV A+AIHK S R + F+A Sbjct: 241 P-FSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKYSDRSEQNFVA 299 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIPEQLLESELFGYVKGAFTGA GK GLIQAAN GTLFLDEIGDM + LQ+KLL Sbjct: 300 INCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLL 359 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E RE++P+G+++ V+IRIISATN+N A+ IA +FREDL+YRLNVIP+ LP LRE Sbjct: 360 RVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRE 419 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+ DIELLV+YFL H++ +G+ YPGI +V+ L + WPGN+RELSNL+EYLVN+VPS Sbjct: 420 REGDIELLVYYFLDRHSQAIGTCYPGITEEVINSLNAYHWPGNIRELSNLVEYLVNIVPS 479 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G+ ID LLPP D + S + + +LEEME+ I ++++R ++ Sbjct: 480 GDQIDIDLLPPYF---------DTPQESCTPMVSINDDNVSLEEMERIKIEDSINRLGNR 530 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 K VA ELGIG+ATLYRK+KKY L Sbjct: 531 KLVAKELGIGVATLYRKLKKYRLS 554 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 198/603 (32%), Positives = 322/603 (53%), Gaps = 30/603 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L + Q+ A +A+VL++EVEI+D +L RVAGTG +G +L + +HVL Sbjct: 2 SRLALVSENGQKVAEAIATVLKVEVEIIDTDLVRVAGTGIVRYDVGTRLLR-GLVNKHVL 60 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T + + ++ F +C C C KA + P+ ++ +G ISLIA Q+E + Sbjct: 61 QTGSHIFIREAGFHEICLSCPLTGRCFYKASIVYPITVESEVIGTISLIAFDVAQKETLC 120 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFV 185 N +++ ++ + SK++E + + ++ ++D + +GV+ VD + + Sbjct: 121 KNTDSLIEFIGRMADLISSKVVEQEIMAERTVLANRLEAVVDAVGEGVMAVDRDGCITHF 180 Query: 186 NQTALKTLGVVQNNIIGKPIRFR------PLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 N++A + G + +IGK + + + ++++ + ++ Sbjct: 181 NRSAERIFGAKKEQVIGKDSKILFPSLPLSSVLQDGIGFNSKEVFINYEGRKLHLLSTAK 240 Query: 240 NIQGR--------QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 I+ + F ++ + N + + +VG + + ++K +I+ Sbjct: 241 PIKVKNGQVAGVVASFQDFKETQKLAYEIMNTHEMIGFDDIVGASKPLLEVKAKAKKISA 300 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S S+V++VGESGTGKE+ ARAIH +KPF+AINC A+PE LLE ELFGYV+GAF+G Sbjct: 301 SNSNVLIVGESGTGKEIFARAIHSAGPYGHKPFVAINCGAMPENLLEIELFGYVEGAFSG 360 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A GK G + AN GT+FLDE+G+M L LQ KLLR ++ R I +G + P+ V+IRII+ Sbjct: 361 ARRGGKPGKFELANGGTIFLDEVGNMSLYLQTKLLRVLKERVIERVGGTRPVPVEIRIIA 420 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN +L + + + FR+DL+Y L+VIP+ +PPLR RQEDI LL+ +++ R LG Sbjct: 421 ATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPLRTRQEDIPLLLDFYMKRFNRLLGKDIK 480 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT 531 G + +E K+ WPGN+REL +EY VN+ +I LPP + D Sbjct: 481 GFTDEAMEACIKYPWPGNVRELVYAVEYAVNL-EEEPLISPESLPPAIREGARKRTRDGI 539 Query: 532 EVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKY 587 L L ++EK+ I AL ++ K + A LGI AT+YRKI+K+ Sbjct: 540 AGGGQLLQ--------LAQLEKEAITAALEQYGWSDEGKTKAARALGISRATIYRKIQKF 591 Query: 588 ELL 590 +L Sbjct: 592 KLS 594 >UniRef50_A4J154 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Peptococcaceae RepID=A4J154_DESRM Length = 593 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 205/596 (34%), Positives = 329/596 (55%), Gaps = 19/596 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +L++IQ T++++A ++A + +VE+VD +L RVAGTG + F+ +S R Sbjct: 1 MAGILLEIQETVEKYASIMAKISNFDVEVVDADLFRVAGTGIFAPFVNMDMSAEGYAYRQ 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VL+T +++ DP+C+ C + NC E+ + P++ + + +GVI L+ + + Sbjct: 61 VLKTGKLQIIYTPGRDPICQDCPKRHNCTEEIEIAMPILARGKTIGVIGLVGSSEWHRNT 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLED--QGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I + + + I+ +K E Q +++ + ID+M+QG+L++ + + Sbjct: 121 ILQDEGTYLGLIEQIANFIAAKATERIDQKKQESMLSALSCTIDHMEQGILILGSDRTIT 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL----H 239 N A K L + + G ++ P + +G ++++S +K I+G++ Sbjct: 181 LANYEARKQLKL--EILEGSQVKLTP---TRDKINGQSEYLLSVAEKKTYILGEIYIPFK 235 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + L+ + + ++G L+ I ++A S S+V++ Sbjct: 236 VDESYAEVLVFTRSKNLHQKMYALTAAISTGNIIGSSEETAALRMEIEKVANSASTVLIT 295 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKEV A AI + RR++ F+A+NCAAIPE LLESELFGYVKGAFTGA NG+ G Sbjct: 296 GESGTGKEVAATAIWRAGNRRDQQFVALNCAAIPESLLESELFGYVKGAFTGADPNGRIG 355 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G +FLDEIGDMPL LQAKLLR ++ R+I+ IG++ I VD+R+I+ATN++L Sbjct: 356 KFELANHGIVFLDEIGDMPLYLQAKLLRILQDRKIVRIGSNQLIPVDVRVIAATNKDLKS 415 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 IA+GKFREDL+YRLNVIP+ + PLR+RQ+DI L + F + R G I P ++ Sbjct: 416 MIADGKFREDLYYRLNVIPLNILPLRQRQKDIPDLANLFAQRYATRFGKSQCRIPPQTMD 475 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS----DVTEVSE 535 L H W GN+REL N +E++VN+ ++D LP + L + Sbjct: 476 ALLAHPWYGNVRELENTIEFMVNMSDEEGILDLDTLPRDFLEHQRRAAYKHDWSANPAEG 535 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKY 587 + D L+E+E++ I++AL KK A LGI +ATLYRK +++ Sbjct: 536 SLPPTDAQTVLPLKEVERREIQKALQLFGESTQGKKSAAKSLGISLATLYRKTEEF 591 >UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMP1_ACIFE Length = 596 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 209/597 (35%), Positives = 340/597 (56%), Gaps = 21/597 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +S L IQ T+ +A +++ + ++VE+VD+NL RVAGTG + + ++ + R Sbjct: 8 IRSRLRNIQRTVASYAGIISKIAGVDVEVVDDNLYRVAGTGMFAAGVDASMAQEGHVYRK 67 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 VLET +V+ Q + +C+GC + NC E+ L P++ + +GVI L+ + EQ+ H Sbjct: 68 VLETGKRRVIYQPGEELVCQGCPNFLNCPEEIELAMPILAEGHPIGVIGLVGSSREQKLH 127 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I +N F + + I+ K +E + + + ++++ QG+L++ + RV Sbjct: 128 ILENETLFLELIEQIADFISVKAMERERALQREALLSTLNATLEHIQQGILILGKDFRVT 187 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQ------ 237 N+ A++ L N+ G+ I + + ++ ++ + ++G Sbjct: 188 DCNRAAMEQLETP--NLAGERIFLE---ATGDNLAKYTEYSLTALGRQYRLMGTYLPVPQ 242 Query: 238 -LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + Q +F + F A P ++G +LK IS++A S S+V Sbjct: 243 PTRDYQSVLIFYRSREIKERYFETAALPAVDK-TSILGSSPATLKLKEEISKVARSTSTV 301 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+VA +I + S RR+K FIA+NCAAIPE ++ESELFGYVKGAFTGA NG Sbjct: 302 LITGESGTGKEMVATSIWRESDRRDKRFIALNCAAIPESIMESELFGYVKGAFTGADPNG 361 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 + G + N G +FLDEIGDMPL LQ+KLLR ++ R+I+ IG++ + +D+R+I+ATN++ Sbjct: 362 RMGKFELTNEGVIFLDEIGDMPLYLQSKLLRVLQERKIVRIGSNQLMDIDVRVIAATNKD 421 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + E +FREDL+YRL+VIP+ + PLRER EDIE L ++ R+ G P + + Sbjct: 422 LKKMVREKRFREDLYYRLDVIPLRVAPLRERLEDIEDLTLFYSQRFARKFGKKAPRLTEE 481 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V++ L+ +RWPGN+REL N +EY+VN++ +D ++LP ++ + Sbjct: 482 VMDALKGYRWPGNVRELENAVEYMVNLMGEDGTLDVSMLPEDIRTGSREAAAPTENGPGK 541 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYEL 589 +L E+EK IR+AL + + A +LGIG+ATLYRKI++Y L Sbjct: 542 QTGAGQIL--SLRELEKNAIRQALLQCGNHTAGKAMAARKLGIGMATLYRKIQQYGL 596 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 667 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 211/594 (35%), Positives = 323/594 (54%), Gaps = 25/594 (4%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L I P I R A++++ V+ L+VE+V+ R+AGTG Y + +G + ++ R Sbjct: 1 MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARR 60 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 T V + RF P+C+GC K+ C EK L P+ + + G+I +I E + I Sbjct: 61 TGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILK 120 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGP--GDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 F D+V +S I +S + Q N + +++D GV V + ++ +VN Sbjct: 121 TRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVN 180 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQL 246 + A +T+ + + P LT N ++ +S++ K +++G+ + + Sbjct: 181 EHAKRTIRLPDPPL---PANL-TLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDP 236 Query: 247 FLMAFHQSHTSFSVANAPDEPH-------IEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + ++G + +LK + IA S S+V++ Sbjct: 237 RFARLVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIE 296 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+ ARAIHK S R ++PFIAINC AIP+ LLESELFGY+ GAFTGA ++G+ G Sbjct: 297 GESGTGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIG 356 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G LFLDEI MPL LQ KLLR ++ R I +G++ I +DIR+I+ATN NL++ Sbjct: 357 KFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSE 416 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 IA FR DL+YRL VIP +PPLRER ED+++L +F + R G I P ++ Sbjct: 417 LIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMD 476 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 +L+ + WPGN+RE N +E++VN++P V+ +LPP L E+ + + + + Sbjct: 477 MLKSYPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIP 536 Query: 540 LDDAGGTALEEMEKQMIREALSR----HNSKKQVADELGIGIATLYRKIKKYEL 589 L E+E+Q I+ AL R KK A+ LGIG+ATLYRKI+ Y L Sbjct: 537 --------LSELERQAIQRALDRFGSTTGGKKLAAERLGIGLATLYRKIQLYGL 582 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 226/601 (37%), Positives = 354/601 (58%), Gaps = 31/601 (5%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +++L IQPT+ ++A++++ VL++EVEI DENL R+AGTG + K + + + G + R Sbjct: 1 MKTILEDIQPTVIKYAKIISKVLKVEVEIADENLVRIAGTGIFKKKINKSMLGEGYVYRT 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L T +++ + LC C NC EK + TP+ L D +GVI LI + +EQ+EH Sbjct: 61 ALRTGIPQIIENPGKEKLCLPCCKCGNCEEKFEMCTPIKLGDDVIGVIGLICLNNEQREH 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQ 183 + + + ++++ IS E + + + +ID MD+GV++++ + ++ Sbjct: 121 LMKDFHAYMEFLKQISEFISITAYERKEKLREQVLLRSLNLVIDKMDRGVIILNKKGKIT 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN--- 240 +N+ A++ L + N+ I + + G ++ + +++ ++G +H+ Sbjct: 181 HINKKAMEILNFIDNHFIHE----VKVEEVGESIAGMHEYKLKINNQKFSVVGNIHDMGL 236 Query: 241 ----IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 +F V+NA + ++GEC VM LK+ + +I+ S S+V Sbjct: 237 NENQFDKIIIFQDNKSFKDIVTGVSNAGNNIVCNDILGECEVMITLKKNLKKISLSSSTV 296 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ ARA+H R+ + FIAINCAAIP+ LLESELFGYVKGAFTGAS+ G Sbjct: 297 LITGESGTGKEMFARAMHNEGNRKKEAFIAINCAAIPDSLLESELFGYVKGAFTGASSTG 356 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + AN GT+FLDEIGDMPL LQ KLLR ++ R I+ IG++ PI +D+R+I+ATN+N Sbjct: 357 KIGKFELANKGTIFLDEIGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKN 416 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVY--PGIA 474 L + I E KFREDL+YRLNVIP +PPLRER +DI++LV+ F+ +T+ L + I Sbjct: 417 LVKLIEENKFREDLYYRLNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDKHFSSIHID 476 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 V E + WPGN+REL N +E+++N++ + + +P ++L N + EV Sbjct: 477 NKVWETFYNYSWPGNIRELENTIEFMINMLGTDGNLTIDSIPNSVLYNERKIKKGKKEV- 535 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYELL 590 L+E+EK I +AL+ + KK A +LGIGIATLYRKI++Y L Sbjct: 536 -----------YNLKELEKNEIIKALNIYGPSAQGKKAAAKKLGIGIATLYRKIEEYNLS 584 Query: 591 N 591 Sbjct: 585 K 585 >UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=A5I5X3_CLOBH Length = 587 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 223/597 (37%), Positives = 348/597 (58%), Gaps = 29/597 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L++IQ T+ ++A +++SV++++VEIVD+NLCR+AGTG Y + + +S + +V+ Sbjct: 4 STLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVI 63 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T ++++ LC+ C+ + NC EK + TP+IL D +GVI L+ Q+ H Sbjct: 64 KTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFI 123 Query: 128 DNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 +N F + IS +K E + + + +ID++D+GVLV N + + Sbjct: 124 ENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVT-KNNEIVHM 182 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIG-------QL 238 N +A+K L + NN K I ++ S + G + + D++ ++G L Sbjct: 183 NTSAMKQLKLKANN-TNKKIT---ISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVL 238 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + +F H V+ + +E ++G+ + M QLK I +IA S S+V++ Sbjct: 239 SDYDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNSIKKIASSSSTVLI 298 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKEV+ARAIH S + PFIAINC AIP+ LLESELFGYV+GAF+GA NG+ Sbjct: 299 TGESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRV 358 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + AN G +FLDEIGDMPL LQ K+LR ++ R+++ IG++ I +DIR+I+ATN++L Sbjct: 359 GKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLK 418 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + I E KFREDL+YRLNVIP+ +PPLRER+EDIELL+ + + G + I + Sbjct: 419 KLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECK 478 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 +IL + W GN+REL N +E+++N+ ++ +LP N++ N + + Sbjct: 479 DILIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMN------- 531 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYELLN 591 D L+++EK I AL + K+ A+ LGIGIATLYRK++ + N Sbjct: 532 --IDEDIRPLKDVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLE--GIKN 584 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 206/594 (34%), Positives = 314/594 (52%), Gaps = 16/594 (2%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L IQ ++Q+ A +ASVL++EVEI D R+AGTG + R ++G + R L Sbjct: 3 LRDIQESVQQIASAVASVLRVEVEIADSQFLRIAGTGKNEAGVLRTMAGEDHIYRESLLA 62 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 V+ D C C NC E + P+ L + +GVI L+A EQ+E + + Sbjct: 63 GHPVVIMNPGQDERCRPCMHYGNCTETGEICCPIQLDNENIGVIGLLAFDEEQRERLFAD 122 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNIS--KIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + Y++ ++ + KL E + + + ++D MD+ V +VD +NR+ NQ Sbjct: 123 VDAILTYLQKMAELIAIKLKEHYLYVEQLHTVEKLRVVMDEMDKAVFLVDQDNRIIQANQ 182 Query: 188 TALKTLGVVQNNIIG-KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ- 245 A + L + ++ + I L + + V +DK+ L + + G Sbjct: 183 RARQYLQLDHDDSQTAEWIDAIRLADAAQSAPKQVVLSVGQEDKTFLFAIKPILLAGTVK 242 Query: 246 ----LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + V+ + + G + Q K + R+A S S+V++ GE Sbjct: 243 EWVITLDDVQEVVQIARQVSGYSEPDPFRMIGGNSPAIVQAKEVARRVAASDSTVLLQGE 302 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+ A+AIH+ S RR++PF++INCAAIPE L+ESELFGY +G+FTGA GK GL Sbjct: 303 SGTGKELFAKAIHQASPRRDEPFLSINCAAIPEHLMESELFGYEEGSFTGARKGGKPGLF 362 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS-SPIQVDIRIISATNQNLAQF 420 + A GTLFLDEIGDM + LQ+KLLR ++ +E+ IG + PI++ RII+AT+ +L + Sbjct: 363 EVAGKGTLFLDEIGDMSMHLQSKLLRVLQEKELYRIGGNGKPIRLAARIIAATHLDLQER 422 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + G FR DL+YRL+VIPI LP LRER+EDI L + L H R+G G + + I Sbjct: 423 VDAGLFRLDLYYRLHVIPIHLPSLRERREDILPLANDILLAHANRVGKGLHGFSKETQNI 482 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L H W GN+REL N++EY VN+ + + LP + E S + Sbjct: 483 LFHHDWRGNVRELENVIEYAVNMEAT-SWVQPASLP--IRTGRLRESSPHSVEESQGPFD 539 Query: 541 DDAGGTALEEMEKQMIREALS----RHNSKKQVADELGIGIATLYRKIKKYELL 590 G L+E+E+ I A+ R+ K++ A LGI ATL+RK+++Y + Sbjct: 540 WQKQGLLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREYGIT 593 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 198/597 (33%), Positives = 336/597 (56%), Gaps = 21/597 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + L+ I+ + R+ +++++L ++V +VD+N+ RV GTG Y G + ++ Sbjct: 1 MEVSLLNIKEDVNRYINIISNLLNVDVGVVDKNMFRVTGTGLYKNIDGVYAL--GSVYKN 58 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 LET ++ R LC C K+NC+EK + TP+ +GV+ L+ EQ+ Sbjct: 59 TLETGKTHIIENPRLHTLCTQCKDKKNCKEKLEISTPIYCHKEIIGVLGLVCFNDEQKNK 118 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGP--GDNISKIFATMIDNMDQGVLVVDDENRVQ 183 I N + + + I+ K E Q + T+++N+++GV+++D +N + Sbjct: 119 ILANCESYLHFTKQIAEFIGIKFFEYQENLLQKDQENTLKTILENINKGVIIIDKDNTIV 178 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ- 242 +N A++ L + +GK I + ++++ +S ++K ++G+ ++ Sbjct: 179 SINPIAIEKLNLKF-QCVGKKI---IIITQNDYLMNEEVFKLSINNKDFTVVGKKISLTS 234 Query: 243 -----GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 + + + + + + + G ++LK I +IA + S+V+ Sbjct: 235 FDNRKNSAFIFEDIKKINENIAEITNNNVISLNDIYGNSEATKKLKENILKIADTSSTVL 294 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKE+VAR++H S R+NKPF+ INC+AIP+ LLESELFGYVKGAFTGA+ NG+ Sbjct: 295 ITGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANNNGR 354 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + ANTG +FLDEIGDMPL LQAK+LR I+ ++I IG++ I +DI+II+ATN NL Sbjct: 355 IGKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATNVNL 414 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + I E KFR DL+YRLNVIP L PLRER+EDI ++ + + R G I +V Sbjct: 415 EEKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIISIDDEV 474 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + + WPGN+REL N++E + N+ + +++S+LLP N+ + +++ + Sbjct: 475 KQAFLSYDWPGNVRELENVIELMFNISGNSSILNSSLLPENISKKSVSNPPKSSQIIIKN 534 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 S D + +EK I + L + + + +++++GIG+ TLYRK+K++ + Sbjct: 535 PSDDF---ENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLKRFGIE 588 >UniRef50_B2V0C5 Hypothetical sigma-54-dependent transcriptional regulator YgeV n=3 Tax=Clostridium botulinum RepID=B2V0C5_CLOBA Length = 580 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 206/589 (34%), Positives = 342/589 (58%), Gaps = 17/589 (2%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + L+ I+ I +++ +L+++L ++VEIVD+ L RVA TG Y K +G + + + Sbjct: 1 MKINLVDIKEIINKYSVLLSNLLTIDVEIVDDKLIRVAATGIYEKRIGENIRDQGYVYKK 60 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L+T V+ D LC+ C K NC E + P+ ++ GVI L+ +Q+E Sbjct: 61 SLDTGKTLVIENPGKDALCDECKKKGNCSEFMEICVPIKYEETTFGVIGLVCSNEDQKEK 120 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + NL ++ I+ K++E +N K F +++++D G++ VD ++ + Sbjct: 121 LKSNLPIMITFLEQIAEFISIKVIEQNQIFENENSIKFFKEIVNSVDDGIITVDIKDEII 180 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHN--I 241 N ALK L V NI+GK I +T + + +++ IIG++ I Sbjct: 181 TANNNALKLLKVKP-NIVGKKITVEE---TDEYTPKGGIYNFNIENEKFKIIGKVVKNCI 236 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + + + + + + + +VG+ + +LK+ I +++ + +++++ GE Sbjct: 237 NNKDCNKIIIFKELITIEEELKNNSINCDSIVGQANNIAELKKKIKKVSYTDATILITGE 296 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+VARAIH R+N PFIAINC AIPE LLESELFGYVKGAF+GAS+ G+ G Sbjct: 297 SGTGKELVARAIHSEGNRKNMPFIAINCGAIPENLLESELFGYVKGAFSGASSGGRIGKF 356 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + AN G +FLDEIGDMPL LQ K+LR ++ + I+ IG++ I ++IR+I+ATN+NL + + Sbjct: 357 ELANNGVIFLDEIGDMPLYLQVKILRVLQEKTIVKIGSNKLINLNIRVIAATNKNLKKLV 416 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 EGKFR DL+YRLN+IP+ +P LR+R ED+ L+ + + R I +++ I Sbjct: 417 DEGKFRADLYYRLNIIPMEVPSLRDRGEDVLLITKMLIEKYNARCNKYIHTIDKELIRIF 476 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 + + WPGN+REL N++E++V++ V++ ++LP + + + E + + Sbjct: 477 KDYSWPGNIRELENIVEFMVSLSGENGVLEKSMLPISFVQSYNEELKNRRDEICM----- 531 Query: 542 DAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKK 586 D L+E+EK I++AL ++ + K +VA +LGIGIATLYRKI++ Sbjct: 532 DDEIMKLKEIEKIYIKKALEKYGNSTKSKMKVAKKLGIGIATLYRKIEE 580 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 203/599 (33%), Positives = 326/599 (54%), Gaps = 31/599 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ IQ A + SVL ++V IV++ L R+AGTG Y +G ++ + + L Sbjct: 7 LEYIKSDIQNIAEAIVSVLNIDVTIVNKELFRIAGTGVYIDKIGEKVDKYT-AFKKSLTE 65 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 + ++ + +C C C E A + P+I GVI LIA T EQ + I +N Sbjct: 66 QITILIDDPKSSDICRECYKSGACVEFAEVCCPIICDGVSHGVIGLIAFTKEQAQIIENN 125 Query: 130 LREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMI--DNMDQGVLVVDDENRVQFVNQ 187 +++ ++ + +KL + + +NMD+ V+ +D + ++ N Sbjct: 126 KSGLINFLGKMADLISNKLKAQIKTYELELEKKKLETLLNNMDKAVVSIDVDGKIDKYNS 185 Query: 188 TALKTLGVVQNNIIGKPIRFR--------PLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 + + ++I GK I F+ + + +D K I ++ Sbjct: 186 KFKELFNIK-DSITGKNIFVELDFIKKPSINNFKKDKSCSFFYKRYGYDSKGIYNINKIV 244 Query: 240 ---NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 ++G + + + +++ N +E ++GE +R K+ + S S+V Sbjct: 245 LKNELKGYVIDFIDKRDAIKNYNKMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTV 304 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESGTGKE+ ARAIH S R + PFIA+NCAAIP+ LLESELFGY +GAFTGA G Sbjct: 305 LITGESGTGKELFARAIHNHSNRVDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGG 364 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G+ + A+ G++FLDEIGDM L LQ+KLLR ++ +E+ IG+ S + +D+RII+ATN++ Sbjct: 365 KLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKD 424 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + G FREDL+YRLNVIPI LP LRER+EDI L++ + + ++++L I Sbjct: 425 LEKMVQNGTFREDLYYRLNVIPIKLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDSR 484 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 VV+ + +++WPGN+REL N++EY VN+ S +I ++P + N S Sbjct: 485 VVDAMMEYKWPGNIRELQNIIEYSVNMSSS-SIITMNVIPQKIKN-----------TSVE 532 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELLN 591 L + L+E+EK I +AL+++ K+ A LGI ATLYRKI+KY +++ Sbjct: 533 ELEVKSDRIIPLDELEKIEIIKALNKYKDYKKDKELTAKALGISRATLYRKIEKYNIIS 591 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 200/592 (33%), Positives = 322/592 (54%), Gaps = 27/592 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 ++L +I+ +Q A + ++ ++V IVDE L R+AGTG + + +GR NS Sbjct: 16 MDNILEEIKNDLQSIAETIKAITNVDVTIVDEKLKRIAGTGPFKEKIGRYAPKNS-AFEK 74 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L+T + + P+C C+ +NC+E+ L P+ ++ +G++ + + Sbjct: 75 ALKTGRQYFIVNPGKHPICASCEEHQNCKEELELCIPIRNGEKIIGILGMSIFDKNTKID 134 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + +F ++ + S + +K+ E + + S T+I+++++G++++D +NRV Sbjct: 135 FLNKQEDFKNFEKRFSELITTKINEKKLGVMIEYRSSELMTLINSINEGIIILDSQNRVV 194 Query: 184 FVNQTALKTLGVVQNNIIGK--PIRFRPLTFESNFTHGHMQHIVS---WDDKSELIIGQL 238 VN+ + L V + + P++ + +F + + S I + Sbjct: 195 TVNKYLKEKLNVSEKTPVKSIFPVKLLQELEKKDFEGEVGPVEIKGIKFVINSSPIAVKG 254 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + +F + + + + + +VGE ++ K +IA S V++ Sbjct: 255 QRVGTVLVFSDFSKMQESVYKASKMSEIVTFDDIVGESDAIKYAKSQAIQIADSEVPVLL 314 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESGTGKE+ ARAIH S R+N+ F+ INC AIPE L+ESELFGY KG+FTGA+ GK Sbjct: 315 LGESGTGKELFARAIHFQSSRKNEIFMPINCGAIPETLIESELFGYEKGSFTGANVTGKI 374 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A GT+FLDEIGD+PL +Q KLLRA+E +EI+ IG +PI+V+ RIISAT+++L Sbjct: 375 GKFELAKDGTIFLDEIGDLPLSMQVKLLRALEEKEIVRIGGYTPIKVNPRIISATHKDLY 434 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 Q + EGKFREDLFYRLNV+PI +PPLRER DI +L +YFL + G G + + Sbjct: 435 QMVLEGKFREDLFYRLNVVPIVIPPLRERGYDIIILANYFLEKFNKIYGKNIKGFSKESE 494 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++L + +PGN+REL NL+EY VN S + I + L E Sbjct: 495 KLLLSYPFPGNIRELRNLIEYAVNF-ESKDYISPETINQRLHRKTLEEGK---------- 543 Query: 539 SLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 ++ EK +I+E + R+ SKK +A +LGI IATLYRK+ + Sbjct: 544 ----TLAEMVKNYEKNVIKEYMLRYGSDVESKKLIAKKLGISIATLYRKMAE 591 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 196/602 (32%), Positives = 322/602 (53%), Gaps = 33/602 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L I+ ++Q A +A+VL+++V I+D+N R+A TG Y KF+G ++ G + E Sbjct: 3 LNSIKSSVQEVAEAIAAVLKVDVTIIDKNFNRIAATGKYKKFIGNKIPGKCLFELVMKEK 62 Query: 70 KTEKVVTQSRFDP------LCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 KT + + + +CE C++KE C E A +G P+I++D +GVI + +Q Sbjct: 63 KTNHIKRYLKDNEKKINPSVCESCEAKERCTEYATIGYPIIMEDEVIGVIGINIFNEKQL 122 Query: 124 EHISDNLREFSDYVRHISTIFVSKLL--EDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 IS ++ +ST+ V ++ + ++ +ID++ G++ VD+ Sbjct: 123 NMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTEETNHIIDSLSHGIMCVDNNGI 182 Query: 182 VQFVNQTALKTLGVVQNNIIGKPIRF----RPLTFESNFTHGHMQHIVSWDD----KSEL 233 ++++N K L + + +++ I+ + S G I ++ KS Sbjct: 183 LKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIKLLSKEYKGKRISIHGKNESFLIKSSP 242 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSP 293 II + + F + ++ + + E ++G ++ +K + IA + Sbjct: 243 IIFKGERVSNIIEFNKKIDEVQAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTD 302 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE+ ARAIH S R + PFIA+NCA+IP+ LLESE FGY GAF+GA Sbjct: 303 STVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAK 362 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 G+ G + AN GT+FLDEIGD+PL LQ K+LR ++ + IG I VD+RII+AT Sbjct: 363 REGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIAAT 422 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N++L + G+FR+DL+YRLNVIPI LP L++R EDI LL Y + R + Sbjct: 423 NRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIKQL 482 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 + +V + +K+ WPGN+REL N++EY+VN +I + LP + + E+S Sbjct: 483 SKEVKDSFKKYSWPGNIRELENVIEYIVNTTKEN-IIYNEHLPKSFKISKEDEKS----- 536 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + + L + EK ++ + + K+++A EL I ++TLYRK+ KY L Sbjct: 537 -------NKSLQDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRKLNKYNL 589 Query: 590 LN 591 Sbjct: 590 QK 591 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 228/596 (38%), Positives = 332/596 (55%), Gaps = 20/596 (3%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S+L +IQ ++ +A ++A +LQ +VEI DE+L R+AGTG Y + + + ++V Sbjct: 2 SLLKKIQNYVKDYAEIIADILQCDVEIADEDLVRIAGTGQYSENINELCK--GIVYKNVF 59 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 ETK +++ + D LCE C K+ C E + P+ +D+ +GVI LI T E ++ + Sbjct: 60 ETKKSRILINPKEDELCEECSHKDTCTETLEMSAPIFYKDKVIGVIGLICFTEEDKKRLL 119 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI--FATMIDNMDQGVLVVDDENRVQFV 185 N+ + + I K+ E + + + +I+N D+ VLVVD E ++ Sbjct: 120 KNMETYLKFTEKIGDFISGKVFELEEELEKKEIMGIMKQIINNYDKCVLVVDSEGKILDA 179 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG-- 243 N ALK L + +G + + ++ G + + +IG L + G Sbjct: 180 NDLALKELKIESG--LGLAYQRINIIPKNEALFGKDIFSAEINREKYNLIGTLIPVTGFS 237 Query: 244 -----RQLFLMAFHQSHTSFSVANAPDEPHI-EQLVGECRVMRQLKRLISRIAPSPSSVM 297 LF S E ++ + M +LK I +IA + S+V+ Sbjct: 238 SKEYKIFLFENFNFDKSKEISKNKYAANNIFLEDIISKSEKMSKLKEKIRKIAKTQSTVL 297 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKE++ARAIH S R +PFIAINC AIPE LLESELFGYVKGAF+GAS G+ Sbjct: 298 ITGESGTGKELIARAIHNCSDRAKQPFIAINCGAIPENLLESELFGYVKGAFSGASNEGR 357 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + AN G +FLDEIG+MP LQ KLLR ++ R I+ IG++ I ++IR+I+ATN+NL Sbjct: 358 VGKFELANNGVIFLDEIGEMPFFLQVKLLRVLQERTIVRIGSNKLINLNIRVIAATNKNL 417 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + EGKFREDL+YRLNVIP+ +P LRERQEDI LL Y +++ LGS + D+ Sbjct: 418 LKLVKEGKFREDLYYRLNVIPLKVPALRERQEDILLLRDYLNTKYSKSLGSSKIVMDDDI 477 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 EI KH WPGN+REL N +E+L+N+ ID L S + Sbjct: 478 NEIFLKHSWPGNVRELENSVEFLLNMSDENGNIDEE--TREDLKRNLKSNSKYDDKILEK 535 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 ++D LEE EK++I +AL + K A++LGIGIATLYRKI+KY+L Sbjct: 536 KVIEDDEIITLEESEKRLISKALRIYGSDTTGKNICAEKLGIGIATLYRKIEKYKL 591 >UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-control protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5B22 Length = 577 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 222/595 (37%), Positives = 348/595 (58%), Gaps = 29/595 (4%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 + +L Q+Q Q++ +L+ +L+++V I+D R+AG+G + LG +S +++ Sbjct: 1 MEGILQQMQGIAQKYVDILSEILKIDVTIIDIRQIRIAGSGRMQERLG-DMSSYGYIVKT 59 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 LE+K V+T +C C K C K+ + P+IL D+ +G + + +Q+ H Sbjct: 60 CLESKKRIVLTNPEDSEICFSCPKKATCDNKSEVWQPLILDDKVIGALGFVCFNQKQKNH 119 Query: 126 ISDNLREFSDYVRHISTIFVSKLLE--DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 N F ++ S + VSK + + ++ +F +ID ++ G++V++ E Sbjct: 120 FEKNYNLFLKFLEQFSDLIVSKARDVIEFNRNKDVLLLFENVIDRVEMGMIVLNKEEEAV 179 Query: 184 FVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ- 242 +NQ A K L + + GK + + ++ + ++ + IG+ ++++ Sbjct: 180 KINQLARKILHINEA---GKKLPDILFSETGKKVLDLKEYQIQIENITYTAIGKFYDVEL 236 Query: 243 ----GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 LF A + + N+ + I++++G + +K I IAPS SSV + Sbjct: 237 EDYKKVFLFQNAVYDEENILGINNSLQKRDIDKILGVSSKIMSIKEKIQIIAPSASSVFI 296 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 GESGTGKE+VA A+H S R+N PFIA NCA+IPE LLESELFGYVKGAFTGA G+ Sbjct: 297 TGESGTGKELVATALHSESERKNFPFIAFNCASIPENLLESELFGYVKGAFTGADNKGRI 356 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G+ +AAN GTLFLDE+GDMP LQ KLLR +E +EI +G++ I++D+R+I+ATN+N+ Sbjct: 357 GIFEAANGGTLFLDEVGDMPSYLQVKLLRVLERKEITRLGSNQVIKIDVRLIAATNKNME 416 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + + +G+FREDL+YRLNVIPI LPPLRER+EDI++L F+ ++ L GI + Sbjct: 417 ELVTKGEFREDLYYRLNVIPIKLPPLRERKEDIKILAKNFIDKYSSILNKTVSGIDQNFW 476 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 + ++ WPGN+REL N MEY+VN++ EVI+ LLP +L H+ Sbjct: 477 RKMEEYSWPGNVRELQNSMEYVVNMMKYTEVINFRLLPHKVLGK--------------HI 522 Query: 539 SLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 ++D+ LE MEK+MI + L+ + K+++A +LGIGIATLYRKIK YEL Sbjct: 523 TIDEEENFNLEHMEKRMIEKLLNIYGYSPEAKQEIAKKLGIGIATLYRKIKVYEL 577 >UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium RepID=A5TW11_FUSNP Length = 571 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 312/593 (52%), Gaps = 34/593 (5%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 + L I +++++ +++ V+ ++VEI+D + R+AGTG + +G + S + VL Sbjct: 2 NFLNFILDDVKKYSEIVSKVINIDVEIMDSSFTRIAGTGTLKEKVGLNMKDESHIYHQVL 61 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +TK ++ + R D C C K+ C+E+ + TP+I QD +GVI LI +++ Sbjct: 62 KTKKTIIIFEPREDTHCFTCQKKDLCKEELEISTPIIYQDEVIGVIGLICFEKDKKYDFI 121 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQG--PGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + + ++ IS K+ ++I + +I+ + +++ + +N ++ + Sbjct: 122 EKKDLYIQFLEQISKFISYKVYVYLSSLQLKRDNEILSNIINRVQDIIILTNRKNEIELI 181 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 N+ LG + + + + S+ + + K IG + + Sbjct: 182 NKKGQNILGSISED-------EKIILKTSSNFLNQKEFNFLYSGKEISAIGDIFTFSLEK 234 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQ----LVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + ++ E M+ + +S++A + +SV++ GE Sbjct: 235 SEELTKTLFVFKEISEFKNYLLSFHGNSSIILLESPQMQDIYSHVSKVARNDTSVLITGE 294 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE++A+ IH LS N PFI +NC AIPE L+ESELFGY KGAFTGA GK G Sbjct: 295 SGTGKEIIAKQIHDLSSYSNGPFITVNCGAIPESLMESELFGYTKGAFTGADPKGKIGFF 354 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + AN GT+FLDEIG+MPL +Q K+LR ++ ++I PIG+ + Q+++RII+ATN+NL + + Sbjct: 355 EKANNGTIFLDEIGEMPLQIQVKILRVLQDKKITPIGSRTEKQINVRIIAATNKNLEEEV 414 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 + FR+DLFYRL+V PI +PPLRER++DI+ LV +F+ + I+ DV + Sbjct: 415 EKRNFRQDLFYRLSVFPIDIPPLRERKKDIKTLVEFFIKKYYISFQKEQKEISTDVYQHF 474 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 ++ WPGN+REL N +EY +N++ E ID LPP L N Sbjct: 475 LEYSWPGNIRELKNTIEYCMNMIEENEKTIDLKHLPPKFLGNKE---------------- 518 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQV----ADELGIGIATLYRKIKKYEL 589 D L+E+EK+ I L + + + A LG+GIATLYRK+ Y L Sbjct: 519 KDEKIKTLKELEKEAISNLLKIYGNSSEAKKIIAKSLGVGIATLYRKLSSYNL 571 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 211/600 (35%), Positives = 332/600 (55%), Gaps = 18/600 (3%) Query: 5 TTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLR 64 T S L + Q + ++ +ASVL +++EIVD+ L R++GTG Y + + + Sbjct: 4 TMLSKLKEFQQEMIKYTETVASVLDVDIEIVDDRLIRISGTGLYKSKINESVVTEGFIYD 63 Query: 65 HVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQE 124 +V++T E VV + LC C C K + P+ +R +GVI I+ ++ Sbjct: 64 NVIQTGQELVVLDICDNQLCIECSHYMKCLNKVIIAVPIKYNNRTIGVIGAISTDKTKKV 123 Query: 125 HISDNLREFSDYVRHISTIFVSKL--LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRV 182 IS + + +V HI + K+ E + +I+N+++GV+++D +++ Sbjct: 124 EISAKIDNYLKFVNHICDLISMKIEEHEASKNSSRKMDMMIEIIENVEKGVIILDINSKI 183 Query: 183 QFVNQTALKTLGVVQ---NNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 ++N ALK L + + NI+ I + + K + ++ Sbjct: 184 SYINNIALKKLDIYKNIIENIVNIVSVESSSNGHELLEIDIDNKIYNINAKIIPVYPYIN 243 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 +F + V + IE ++G M ++K ++A S S+V++ Sbjct: 244 QYDKIIIFDKTYINHKGHGKVNSGWGNSDIESIIGNSEAMLKVKERTKKLAKSNSTVLIT 303 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE++ARAIH R NKPFIAINCAAIPE LLESELFGY+KGAF+GAS+ GK G Sbjct: 304 GESGTGKELIARAIHAEGSRWNKPFIAINCAAIPENLLESELFGYIKGAFSGASSGGKVG 363 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + AN G +FLDEIGD+ + LQAKLLR ++ R+ IG++ I +DIR+I+ATN+NL + Sbjct: 364 KFELANEGVIFLDEIGDLSMPLQAKLLRVLQERKFARIGSNKLIDLDIRVIAATNKNLLK 423 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + EGKFR+DL+YRLNVIPI LPPLRER++DIE ++ F ++ LG I +V+ Sbjct: 424 LVNEGKFRDDLYYRLNVIPINLPPLRERKDDIEAIMMKFASKYSLELGIQLNKIEENVMN 483 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 +L + WPGN+REL N +EY++N+V +I +LP ++LN + + Sbjct: 484 MLINYNWPGNIRELENAVEYMMNLVGDDGIIYKDMLPLDILNYYNINGNVCKNKDINIIF 543 Query: 540 LDDAGGTALEEMEK---------QMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 DD G +E E+ I + L+++ +KK++A +LGIG+ATLYRK+++ Sbjct: 544 EDDIVGGIVENQERILSIKELELTYINKLLNKYGRDTKTKKKIAKDLGIGLATLYRKLEE 603 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 194/597 (32%), Positives = 296/597 (49%), Gaps = 33/597 (5%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLET 69 L +P I++ ++ +L ++ +++E V T Y K G + S + VL Sbjct: 4 LDLCKPAIEKVITSISDILNVDAAVINERGHLVVSTERYLKQKGENVHVPS--IEFVLAK 61 Query: 70 KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDN 129 VV + +C+GC ++C K L + + + + +GV+SL + T E Q +S + Sbjct: 62 GQ-YVVDKPGSMEMCKGCRFLDSCPAKVELLSSIKVANHAIGVVSLTSFTKEGQNRLSKH 120 Query: 130 LREFSDYVRHISTIF----VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + + +S + S D+ ++ +D + D V Sbjct: 121 TERYQQILTEVSEMITAIVQSHATRQTESSDDSMRLLEGALDTVADAYFTFDRSGNVIHT 180 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 N +A + L Q++++ + L S T + DK + I Q Sbjct: 181 NASARRLL--SQHDLLPAEVSRMLLPSLSGLTAHSLPIANCLVDKLDAPTEATPIIVNNQ 238 Query: 246 LFLMAFHQSHTSFSVANAPDE---------PHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 L S +V D + Q+VG ++Q+K + +I S S+V Sbjct: 239 LIGGVLRVQRGSLTVPRLMDHQGSRSPGKADSLAQIVGNSPAIKQVKEMAMKIGNSNSTV 298 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+GTGK +A+AIH+ S R PF+AINCA+IPE L ESELFGY GAFTGA G Sbjct: 299 LITGETGTGKGHLAKAIHEASTRAYSPFVAINCASIPENLFESELFGYEDGAFTGAKKGG 358 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A GTLFLDEIGDMPL LQAKLLR ++ + + IG + + +RII+ATNQN Sbjct: 359 KPGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQN 418 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + + FR DL+YRLNVIPI +P L ER+EDIELL F+ + + G + GIA + Sbjct: 419 LEELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAGRTFFGIARE 478 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 + +L + WPGN+REL N +EY +N+ V+ + LPP L S Sbjct: 479 AINLLTHYHWPGNVRELENAIEYAMNM-EQDTVLTADSLPPRLRARPLVAPSHSGP---- 533 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 A + + + IR +L +H K++VA+ELGIG+ TLYRK+K + Sbjct: 534 ------AIKVRVADAQADAIRASLQKHGSDLKGKQRVAEELGIGLRTLYRKLKLLGI 584 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 190/591 (32%), Positives = 316/591 (53%), Gaps = 27/591 (4%) Query: 17 IQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVT 76 +Q+ A ++ VL L+V IVD +L RVAGTG+Y +G +L ++++ + Sbjct: 21 VQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLP-PGSGYEFSIKSRQATTIN 79 Query: 77 QSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDY 136 + + +C C K C+EKA + +P+ L + + +I + A T Q++ ++ ++ + Sbjct: 80 KPGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSF 139 Query: 137 VRHISTIFVSKLLEDQGPGDNISKIFA--TMIDNMDQGVLVVDDENRVQFVNQTALKTLG 194 ++ +S + +Q + +++++ +G+L VDD N V N L Sbjct: 140 IKKMSELLADSFSNEQIILEKTKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLD 199 Query: 195 VVQNNIIGKPIR---------FRPLTFESNFTHGHMQHIVSWD--DKSELIIGQLHNIQG 243 + + +IIG+ + T S H V + I + Sbjct: 200 I-RGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGIHCLVNMKPIKMNNKVVGA 258 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 +F V+ ++ + +++LK +++ + S+V++ GESG Sbjct: 259 VATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESG 318 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+ ARAIH S R PF+ ++C AIPE LLESELFGY GAFTGA GK G + Sbjct: 319 TGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFEL 378 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A GT+FLDEIGDMP+ LQ KLLR ++ IG+ I++D+R+++AT+Q L +FI + Sbjct: 379 AEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEK 438 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 KFR DLFYRLNV+P+ +P LRER+EDI LL+++FL+ + +L P ++ +++ L + Sbjct: 439 NKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQ 498 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N+ EY +N+ G +D LP N+ + + E + ++ D Sbjct: 499 YSWPGNVRELENVAEYFININEKG-YLDLGDLPKNMKDK-------LLETQDYQKNVGDD 550 Query: 544 GGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYELL 590 LEE+EK+ +A+ + K+ +A +LG+ AT+YRK+KKY L+ Sbjct: 551 EILPLEELEKRSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGLI 601 >UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6ANF6_DESPS Length = 600 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 201/587 (34%), Positives = 315/587 (53%), Gaps = 21/587 (3%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 VL+ +Q IQ +A ++ V EVE+VD NL R+AGTG Y K +G+ + LL+ L+ Sbjct: 19 VLLSLQKQIQYYADTISKVTGFEVEVVDTNLIRIAGTGDYSKNIGKSIKKAGNLLKATLK 78 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + + R + +C+GC +KE C E + P+ G + LI + E ++ + Sbjct: 79 STKPLFIENPRKNSICKGCQTKEQCHELLSICAPISDGKNTYGAMELICFSEEIRKKLIP 138 Query: 129 NLREFSDYVRHISTIFVSKLLED--QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 + ++++ +++ + +LE Q +++ + +I+ ++G ++ D +V F N Sbjct: 139 QRDVYVNFLQLLTSSIAAHVLEKHAQKNLNDLFDAMSEVIEINNRGTMICDTNGKVVFKN 198 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR-- 244 A + L + LT + I+ D+ +L+ G+ + + Sbjct: 199 ARAQEILHKT----LNSNFENFSLTATGVTFSDLDEFIIRQGDRQQLLAGKRVKLDSKTS 254 Query: 245 ----QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 + S ++P++ ++ ++G ++R LK I + + SSV++ G Sbjct: 255 RFSSVFIFDTIQSVISLSSGPSSPEDASLQHIIGNSPLIRTLKSQIQATSDTNSSVLISG 314 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE+VARAIH R +PF+AINC AIP+ LLESELFGYV GAFTGAS G+ G Sbjct: 315 ESGTGKELVARAIHFSGNRNKEPFVAINCGAIPDTLLESELFGYVGGAFTGASKQGQIGK 374 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A G +FLDEI MPL LQ KLLR ++ R I +GA++PI VDIRII+A N NL + Sbjct: 375 FELAAGGVIFLDEISSMPLYLQVKLLRVLQERTITRLGAANPISVDIRIIAACNDNLHEM 434 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + + KFR DL+YRLNVIPI PPLR R ED+ LL+ +F + + ++ ++ + Sbjct: 435 MLQNKFRNDLYYRLNVIPIETPPLRNRMEDLTLLIKHFTNKYCDLFNKDQIFLSKNIRQR 494 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 + K+ WPGN+REL N +EYLVN+ ID T + L N + + H + Sbjct: 495 MEKYLWPGNIRELENAIEYLVNIADKKGKIDETSIYSGFLVNPENLGTTIPLSPNNHPPV 554 Query: 541 DDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRK 583 L+E+E Q I A++ + K+Q A LGI +ATLYRK Sbjct: 555 I-----PLKELEFQAITRAIALYGDSTEGKRQAAKSLGISLATLYRK 596 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 169/568 (29%), Positives = 266/568 (46%), Gaps = 47/568 (8%) Query: 37 ENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREK 96 E + +AG + +G G S + ++ + + C+ Sbjct: 106 EEIGFIAGADWSEQVMGTNAIGTSIAIDRPIQ--------------VFAEEHYTKICQSW 151 Query: 97 AFLGTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPG 155 P+ R +GV+++ + H + + + KL E+ Sbjct: 152 TCSAAPIHDPDGRIIGVLNMSGPYEKVHSHTLGMVVSAVKAIE-----YQLKLHENAEKN 206 Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----------I 205 + + +NM +G+L++D + ++ N K + Q + K Sbjct: 207 VMMQRFLEATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLEEKKLDDLFNDPSIC 266 Query: 206 RFRPLTFESNFTH---GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 PL ++ H + I + I + ++ Sbjct: 267 SNHPLHLQNQELHLSVKPSNAVHHVLVDKIPIYEKKERIGSMIIVKEIEKVRQFVNHLSG 326 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + ++G+ + A + S+V+++GESGTGKE+VA+AIH S RRNK Sbjct: 327 NQAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNK 386 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PFIAINC IP LL SELFGYV GAFTGA G G + AN GTLFLDEIG+M L +Q Sbjct: 387 PFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQ 446 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 LLR I+ +E++ IG I VD+RII+ATN++L + + +G FREDLF+RLNV+PI LP Sbjct: 447 VLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLP 506 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+EDI LLV +F+ + +P I D +E L ++ WPGN+REL N++E ++N Sbjct: 507 PLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQYDWPGNIRELQNMIERVLN 566 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 V+ + LP + + Q + + + E++KQ I EAL + Sbjct: 567 QCTK-PVLTAADLPEEIFQPSCSSQ------------VRENVDISRNEIKKQSIIEALKQ 613 Query: 563 H-NSKKQVADELGIGIATLYRKIKKYEL 589 + + A LGI +T YR++ K+ + Sbjct: 614 CNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 165/532 (31%), Positives = 284/532 (53%), Gaps = 20/532 (3%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 S + +I+ IQ +S+++ ++ ++D +L RVA TG + + +G+ L + Sbjct: 1 MYSAMYEIREFIQNLIETTSSIIEFDIYVMDSHLVRVAATGLFKESIGQALPK-GCANDY 59 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSK--ENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 V+E ++ + + +C+ C K C + + P+ +C+G I+++++T + + Sbjct: 60 VIENGEVLIIDSPKGNKICDTCPIKTYGKCFNEYSIAYPIKNDGKCIGAITIMSLTSKLK 119 Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 E + ++ ++ ++K+ E T+++++ +GV++ + Sbjct: 120 EKQVKIRSQLITFLERLAESILTKIKE-----KETKDRLITVLNSISEGVVLTSSSGEIL 174 Query: 184 FVNQTALKTLGVVQN--NIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI 241 N + L N I + ++ ++ I+ + + + I Sbjct: 175 VFNSVMEEILKHKNNIKEIFVEDNFENIISDFKEEAEKELEVILRAPIPNNRMFVSVKFI 234 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDE---------PHIEQLVGECRVMRQLKRLISRIAPS 292 + N + +++ + G +++ Q K L ++ A Sbjct: 235 NNSNEKTDILFIFKHKKELTNIAYKLLADASHLNINLDSIKGNSKLINQTKNLATQAAKY 294 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 S+++++GESGTGKEV ARAIHK+S R+++PFIAINCAAIPE LLESELFGY GAFTGA Sbjct: 295 ESNILILGESGTGKEVFARAIHKMSKRKDEPFIAINCAAIPENLLESELFGYESGAFTGA 354 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 + GK G + AN GT+FLDE+GD+ L LQ KLLR IE ++ +G I++D+RIISA Sbjct: 355 NKGGKPGKFELANGGTIFLDEVGDLSLHLQPKLLRVIEQGQLERVGGVKSIKLDVRIISA 414 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 TN++L + +G+FRED FYRL VIPI +PPLR+R EDI LL +FL + ++L G Sbjct: 415 TNKDLETMVKKGEFREDFFYRLCVIPIMIPPLRKRLEDIILLAEHFLDKYNKKLNKNIVG 474 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 I+ +V + L + WPGN+REL N++EY VN+ + +V+ + +P + Sbjct: 475 ISEEVKKQLLLYDWPGNVRELENVVEYSVNM-ENKDVLTLSCIPKKISAEKK 525 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 183/578 (31%), Positives = 292/578 (50%), Gaps = 71/578 (12%) Query: 37 ENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREK 96 E L +V A G+F+ + L VL+T + G + Sbjct: 60 ERLFKVPAEKAMGRFVSEVVPMTG--LLKVLKTGNSHI-----------GRKFVQGNSLY 106 Query: 97 AFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGD 156 TP++ ++ VG + + E Q ++ + + Sbjct: 107 IVNRTPILHDNKVVGAVGVAQDITELQ-----------------------QIANELNSVN 143 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRP 209 + T+ID G LVV+ E V +N+ + + + + IG+ I Sbjct: 144 EMKSTLETIIDTGHDGYLVVNKEGYVITLNKAYAELIDINPEDAIGRHIKEVIPETELHL 203 Query: 210 LTFESNFTHGHMQHIVSWD--------DKSELIIGQLHNI--QGRQLFLMAFHQSHTSFS 259 ++ G + + + +K IIG + + + F+ + ++S Sbjct: 204 VSQTGKTQIGEVLRVKGREAVVMRYPINKDGRIIGAVSKVMFRDVNQFITSAKTVYSSQR 263 Query: 260 VAN------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 A ++ L+G+ M +LK + R+A PS+V++ GESGTGKE++A ++ Sbjct: 264 RIKGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSL 323 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H S R PF+ +NCAA+PE LLESELFGYV+GAFTGA G+ G + AN GT+FLDE Sbjct: 324 HVGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDE 383 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IGDMPL++QAKLLR ++ +EI +G + V++R+++ATN+ L Q IA+ FREDL+YR Sbjct: 384 IGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYR 443 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNV+ + +P LRER +D++ LV YFL + G G++ D +E+ + WPGN+REL Sbjct: 444 LNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVREL 503 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 N++E N+V G +ID LPP L G +++ S++ + + LE++EK Sbjct: 504 ENVVERAFNLV-DGHIIDVMHLPPYLQKFGKSKRH----------SINKSLPSLLEQVEK 552 Query: 554 QMIREALS-RHNSKKQVADELGIGIATLYRKIKKYELL 590 + I +ALS + +K Q A LGI A LY+KI +Y + Sbjct: 553 EAIADALSVTNGNKMQAAKILGISRAWLYKKIAQYGIK 590 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 163/570 (28%), Positives = 269/570 (47%), Gaps = 51/570 (8%) Query: 57 SGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLG-----TPVILQDRCVG 111 S ++ + + ++ K C + P + Sbjct: 10 SKVNKYCDYSIRVG-AIIINNLGEIQFMSDECRKILCAREYSYNHIQQLIPCFNMKDLIN 68 Query: 112 VISLIAVTHEQQ----EHISDNLREFSDYVRHISTI-FVSKLLEDQGPGDNISKIFATMI 166 + + + E IS +++ + + + E+ + KI + ++ Sbjct: 69 SSTKRKIKLNNKKLNMEVISLKEECMKEFLITLIDANVIDVMYEELKAKEKNLKILSFIL 128 Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHG 219 + G++V+D + +N+T LGV Q IGK + R + Sbjct: 129 ELAYDGLVVIDKYGYITMINKTYADFLGVDQERSIGKHVTEVIESTRMHIVAKTGIAETA 188 Query: 220 HMQHIVSWDDKSELI-------------------IGQLHNIQGRQLFLMAFHQSHTSFSV 260 +Q + + I I +L + + + ++ + Sbjct: 189 QLQKVKGKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYKKIRNIENEYKKYKGQFD 248 Query: 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 + + ++G+ + + K L + A + S+V++ GESGTGKE+ A AIH S R Sbjct: 249 ESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERV 308 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 FI +NCAAIP LLESELFGY GAFTGA GK G + A+ GT+FLDEIGDMPL Sbjct: 309 YGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLH 368 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 +QAKLLR ++ RE+ IGA+ ++D+R+ISATN++L + I EG+FREDL+YRLNV+ + Sbjct: 369 MQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVN 428 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLRER+EDI++L Y L +++LG + + + L ++W G +R+L N++E Sbjct: 429 IPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIERA 488 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 VN+V E+I+ P N+++N + D + ++EK +I E L Sbjct: 489 VNLVEHNEMIEPKHFPGNIVSNKY-------------IVEDSDLNKLINQVEKDIILETL 535 Query: 561 SRHN-SKKQVADELGIGIATLYRKIKKYEL 589 N +K A +L I +LY KI K+ + Sbjct: 536 IYCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 170/541 (31%), Positives = 274/541 (50%), Gaps = 30/541 (5%) Query: 62 LLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVT-H 120 ++ + ++ R LC C + C L P G + Sbjct: 47 IIEEAKRQNSAIMINSPRQHHLCAQCPVIDMCSLALELFFPFAENSLTSGSGLCLQFPLE 106 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS--KIFATMIDNMDQGVLVVDD 178 L ++ +++ + F + E + + ++ + +G++++D+ Sbjct: 107 SLTSMQVMGLNQWLRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDE 166 Query: 179 ENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL 238 + ++ +N+ A + ++ I ++ Sbjct: 167 QKKISTLNERAEQL-------------NLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKV 213 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPH----IEQLVGECRVMRQLKRLISRIAPSPS 294 N + F+ A + +++ P ++G+ ++++ +I ++A S S Sbjct: 214 KNFYQDKKFIGAICHTQNFDTISPLPQRTQRSPVFPGIIGKGPALQKILEIIKQVAKSES 273 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ A +IH+LS R + PF+AINCAAIPE LLESELFGY +G+FTGA Sbjct: 274 TVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESELFGYEEGSFTGARK 333 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 GK G ++ AN GTLFLDEIGDMPL LQAKLLR I+ + I P+G S P+ +++R+I+AT+ Sbjct: 334 GGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATH 393 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + I G FREDLF+RLNVIPI +PPLR+R ED ELL+HY+L + L + ++ Sbjct: 394 RNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILS 453 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 ++ L K+ WPGN+REL NL+EYLVN+ +I LP + E + Sbjct: 454 YAALQQLVKYHWPGNIRELENLVEYLVNIHNQD-IISPEDLPITIQQPIKEENQPIGIQP 512 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYELL 590 + +G + E+ + L+R KK+ A LG+ +ATLYR+IKKY+L Sbjct: 513 VEPQTRKSSGQRSQAEL-----IQMLNRFGWHTDGKKKAAAALGVSLATLYRRIKKYKLK 567 Query: 591 N 591 Sbjct: 568 E 568 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 161/569 (28%), Positives = 266/569 (46%), Gaps = 38/569 (6%) Query: 38 NLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETK--TEKVVTQSRFDPLCEGCDSKENCRE 95 ++ G F G ++ +L L+ T + ++R + + R+ Sbjct: 112 HINLTDAEGVTLHFCGLDITPVGSVLLESLQGTNCTGLAIAENRLVYVLSEENFGTWLRQ 171 Query: 96 KAFLGT--PVI-LQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQ 152 + P+ L R + +++L A H ++ ++ V Q Sbjct: 172 RRMHCAAAPIRDLGGRTLAILTLTAEPGRFHFHTLGTVQAAAEAVSR------------Q 219 Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI------IGKPIR 206 + + T+++ +++G++V+D+ ++ +N+ A + V ++ + +G+ R Sbjct: 220 MALQALLEEQRTLLEVLNEGLVVLDERGCIKALNRYARQLFRVERDLLGAPFHRLGRGER 279 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR----QLFLMAFHQSHTSFSVAN 262 L ++ + + D + L R + + Sbjct: 280 VDSLLLRADEGLHDLDITLQLHDGTHLSCLASVCPTERGGRIVSLRENRRIREITRRIIG 339 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 E ++G R M+ RL + S+ +++GESGTGKE+ A+AIH S R Sbjct: 340 TQASYTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNASERCGG 399 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+A+NC AIP L++SELFGY++GAFTG++ G G + A+ GT+FLDEIGDMP Q Sbjct: 400 PFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMPFDAQ 459 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 A LLR ++ E+ +GA VD+RI++ATN+NL++ +A+G FREDL+YRLNV+ +++P Sbjct: 460 ASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSLSVP 519 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLR R+EDI L +FL R L GI + ++IL H WPGN+REL N +E N Sbjct: 520 PLRMRREDIPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIERAAN 579 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + GE+I++ LP L A L E I AL Sbjct: 580 L-AGGELIEAEDLPLELAQVARRAAEPAVRCGAA---------MDLGSHEMNAIAAALRE 629 Query: 563 H-NSKKQVADELGIGIATLYRKIKKYELL 590 + + A LG+ LY K+ +Y L Sbjct: 630 CRGNVRLAAKRLGVSRGGLYNKMNRYGLS 658 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 163/562 (29%), Positives = 263/562 (46%), Gaps = 47/562 (8%) Query: 44 GTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPV 103 G G G + R L+ + E + P+ Sbjct: 118 GANWNESLRGTNAIGTCLVERKPLK--------------IHASEHFFEENQTLTCSAAPI 163 Query: 104 IL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + + V++L + + ++ + + +L K Sbjct: 164 FSPEGELLAVLNLSGDHRYANDLALGMVVAGANAIEN-----QLQLHRVNTKLYASYKYS 218 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR-----PLTFESNFT 217 T+I +M +G+++VD + +NQ + LGV IG I P+ Sbjct: 219 DTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIGLHISKMFGDNAPVLDLLRTG 278 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQG--------RQLFLMAFHQSHTSFSVANAPDEPHI 269 + V D ++ + + Sbjct: 279 IAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGAVSVLRPRSSSKRSRCLPTTQRARYSF 338 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 ++++G+ M++ + + R + S S+V++ GESGTGKE++A+ IH S R +PF+A+NC Sbjct: 339 DEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNASSRHGQPFVAVNC 398 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAI E LLESELFGY +G+FTGA G+ G ++ AN GTLFLDEIGDMPL +Q KLLR + Sbjct: 399 AAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRML 458 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + R I +G+S I +D+RII+AT+QNL Q + EG FR+DL+YRLNV+PIT+PPLRER + Sbjct: 459 QERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERMD 518 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ L + + + R G I+ + + + WPGN+REL N++E +N+V G+ Sbjct: 519 DLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNIRELENVIERAMNMVDDGDA 578 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQ 568 + + ++ D+ V G L+E+E +M+ AL + Sbjct: 579 LTAEMI-------------DLDPVELPADHAIPDGVRPLKEVEMEMVVRALEMSRGNIVH 625 Query: 569 VADELGIGIATLYRKIKKYELL 590 + LGI T+YRKIK+Y+++ Sbjct: 626 ASSLLGISRNTIYRKIKEYDIV 647 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 180/642 (28%), Positives = 280/642 (43%), Gaps = 104/642 (16%) Query: 18 QRFARMLASVLQLE----VEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEK 73 Q FA M ++ + V + + R+ G +GR+ + V+ Sbjct: 144 QVFASMADGLIVTDAHDVVTVFNPAAERIMGM-RASDVIGRKA-------KAVIAGSRMH 195 Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLG--TPVILQDRCVGVISLIAVTHEQQEHISDNLR 131 +V ++ L ++ + L TP+++ + G +++ Sbjct: 196 IVAETGQPEL----GRRQMIGDAVILTNRTPIVVDGQVKGAVAV---------------- 235 Query: 132 EFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK 191 IS + K+ + + + +++++ G+ VVD E V +VN + Sbjct: 236 -----FEDISAL--EKVTHELHEVKELKERLQLVLESVQDGICVVDREGCVTYVNPAYAR 288 Query: 192 TLGVVQNNIIGKPIRFRPLT-------------------FESNFTHGHMQHIVSWDDKSE 232 + + ++IG+ +R + + T + + D + Sbjct: 289 IVNGRREDLIGRDVRNLSPRGARRQALETGKPVLGHLAQKDGDVTVIADAYPIIVDGEVT 348 Query: 233 LIIGQLHNIQGRQLFLMAFHQS------HTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 ++ + + Q ++ + +G+ +R + Sbjct: 349 GVVSIVKTLTDVQTLAEKLNRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVRDALAMA 408 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 + A P++V++ GESGTGKE+VA IH+ R PFI +NCAAIPE LLESELFG+ K Sbjct: 409 EKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHEK 468 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAFTGA K G + A+ GTLFLDEIG++ +QAKLLR ++ +EI IG VD Sbjct: 469 GAFTGAIKR-KLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVD 527 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 ++II+ATNQ+L + +AEG+FREDL+YRLNVIPI LPPLRER+EDI LLV +FL R Sbjct: 528 VKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQ 587 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 G GI D +E L + WPGN+REL+NL+E V + G I + LP L E Sbjct: 588 GKALRGIHSDALEALMHYSWPGNVRELANLIER-VVTLSDGPWITDSDLPTYLRERAAEE 646 Query: 527 QSDVTEVSEAHLSLDDAGGT------------------------------------ALEE 550 + + E G E Sbjct: 647 NHEGRPLEERPAGGRYGAGERGYNGREHKIGRSVGGISGSLFRENRWEEQGDAPLLTWEA 706 Query: 551 MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 E+Q+I AL RH S A LG+ T+ K +KY + Sbjct: 707 YEQQIITLALRRHGSFNAAAKALGLTHKTVAAKARKYGIDKN 748 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 168/595 (28%), Positives = 294/595 (49%), Gaps = 58/595 (9%) Query: 21 ARMLASVLQLEVEIV---------------DENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 A LA++L+ E++ D ++ G F G ++ +LR Sbjct: 77 AEELAAILEHNAELILVARSIMENLLAYNPDGHINLTDAQGVTLHFCGADMTPVGSILRE 136 Query: 66 -VLETK-TEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQ---DRCVGVISLIAVTH 120 VL T T + + + R + G + K + R++ ++ + +GV++L A Sbjct: 137 EVLGTNCTARCLIEQRLVYVLSGENWKFDLRKRHRQCAAAPVRDASGQLIGVLTLTATPD 196 Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 H ++ ++ V Q + ++++ +++GV+V D Sbjct: 197 NFNAHTLGTVQAAAEAVGQ------------QLMLRRLLAEQQSILETLNEGVIVCDRHG 244 Query: 181 RVQFVNQTALKTL-GVVQN----NIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELII 235 R++ +N+ A + G+ + +++ +P + L +Q + +I Sbjct: 245 RIKTLNRYARQIFSGLDPDAGTIDVLLQP-QGASLLTMPFCNDRELQFMPDGVQSIPCLI 303 Query: 236 GQLHNIQGRQLFLMAFHQSHTSFSVA--NAPDEPHIEQLVGECRVMRQLKRLISRIAPSP 293 + G ++ + +Q + + + + G ++Q + + + Sbjct: 304 SLMPAPDGGRVLSLRENQRIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTD 363 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE+ A+AIH S R+ + FIA+NC A+P L++SELFGYV GAFTG+ Sbjct: 364 STVLLTGESGTGKELFAQAIHNASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSR 423 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 G G + A+ GTLFLDEIG+MPL Q LLR ++ E++ IGA++P++V++RII+AT Sbjct: 424 RGGSPGKFELADGGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAAT 483 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 + NL + +G FR DL+YRLNV+ + +PPLRERQEDI LV+ F+ RL + P + Sbjct: 484 HCNLLDAVEKGAFRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQV 543 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 +P+ + L+ WPGN+REL NL+E +VN+ G ID LP +++ Sbjct: 544 SPEAMRCLQAWHWPGNVRELENLVERMVNLC-EGLEIDRQDLPDDMVQRQQPPVQLP--- 599 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKY 587 +L+E E+Q + + + +H + +Q A LGI LY K+ ++ Sbjct: 600 -------------SLQENERQHVLQVVAEQHGNLRQSAQLLGISRTALYNKLNQW 641 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 166/615 (26%), Positives = 279/615 (45%), Gaps = 67/615 (10%) Query: 7 QSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVA--GTGAYGKFLGRQLSGNSRLLR 64 + L + ++ S + V + ++ RV K + +L+ Sbjct: 114 RVFLESYRNISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKAENVK--GKLID 171 Query: 65 HVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQE 124 V T + +S + N +P+I +G + ++ E +E Sbjct: 172 DVYPTSRLTNIIKSGQVETLQ--KIMLNNHYFISNRSPIIKDGEIIGAVGVLQDISELEE 229 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 L + +++ +I++ G+ + D Sbjct: 230 -----------------------LSRELKYVKELNEELDAIIESSYDGLYITDGNGMTLR 266 Query: 185 VNQTALKTLGVVQNNIIGKPI------------------------RFRPLTFESNFTHGH 220 +N+ G+ +G+ + T T Sbjct: 267 LNKAFEMITGINGREFLGRHVDDIAREGIVSESVSSLALARKETVTIIQETRSGKTTLAT 326 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQ-----SHTSFSVANAPDEPHIEQLVGE 275 + ++ + +I + Q H + ++++ + Sbjct: 327 GSPVFDKIGNIFRVVCNVRDITELNMLKQKLEQVQGLSQHYESQLKTLRIYSGTDKIISK 386 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 MR+L + R+A S++++ GESGTGKE++A IH S R KPFI +NC AIPE Sbjct: 387 STEMRKLLETVVRLAEVDSTILINGESGTGKELIAETIHNHSARAKKPFIKVNCGAIPEN 446 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 L+ESELFGY GAFTGA GK G + A+ GTLFLDEIGD+P LQ KLLR ++++EI Sbjct: 447 LMESELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQVKLLRVLQSKEIN 506 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 +G ++VD RI++ATN+NL + + + +FREDL+YRL+VIP+ +PPLR+R+EDI L+ Sbjct: 507 RVGGRQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPPLRDRKEDIPSLI 566 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +F+ L R+ I+PDVV+IL + WPGN+REL NL+E LV + S +I L Sbjct: 567 VHFIALFNRKYKLN-KRISPDVVDILMAYDWPGNVRELENLIERLVVISSSD-IISRDEL 624 Query: 516 PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGI 575 P +L S + + +S A+E +E+Q++ A +++ + +Q+A +L + Sbjct: 625 PVHL-------SSAAVDNPQVSVSAIIPLKEAVESVERQLLERAFAQYRTTRQMAQKLEV 677 Query: 576 GIATLYRKIKKYELL 590 +T+ RK KY + Sbjct: 678 NASTVVRKAAKYGIS 692 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 172/585 (29%), Positives = 285/585 (48%), Gaps = 47/585 (8%) Query: 33 EIVDENLCRVA-------GTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCE 85 I D++ R A G + +G G + +L+ ++ S + C Sbjct: 106 TIGDQDTIRGAENIDLLPGACWREEEIGNNGVGTAVVLKKPVQV--------SGKEHYCR 157 Query: 86 GCDSKENCREKAFLGTPVILQDR-CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIF 144 C G P++ +D+ +G++ + + H + + + Sbjct: 158 K-HHSWTCS-----GAPILNEDKQVIGILEMSGPVEKTHLHTLGMVVAAVEAISD----- 206 Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 ++ + +S + + + G++V+D + + +N + LG I+G P Sbjct: 207 QLRIQQKNRELLLLSNRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGIP 266 Query: 205 IRFRPLTFESNFTHGHMQHIVSWDD-------------KSELIIGQLHNIQGRQLFLMAF 251 ++ + S+ + + I+ + + G +F+ Sbjct: 267 VKELFEPGQRVEEMLDSGRDFSYSELTLGIGEAVQCLVSGKAIMDEQGKVNGGVIFINPI 326 Query: 252 HQSHTSFSV-ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + + + A H ++G+ + + ++ R+ S A S S++++ GESGTGKEV A Sbjct: 327 NHIKSLVNRFSGAQASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFA 386 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 +AIH S RR+ PFIA+NC AIP +LL SELFGYV GAFTGA G+ G + A+ GT+F Sbjct: 387 QAIHNASSRRDAPFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIF 446 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG+MPL Q LLR ++ R + IG I VD+R+I A+N+ L + + +G FR DL Sbjct: 447 LDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDL 506 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 FYRLNVI ITLPPLR+R+EDI LL H+FL +++LG P + +V+ L+ + WPGN+ Sbjct: 507 FYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPGNV 566 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL----SLDDAGGT 546 REL N++E +VN+ I LP + + ++ ++ L + Sbjct: 567 RELQNVVERMVNIAEESR-ISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRKE 625 Query: 547 ALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYELL 590 +E E++ I L H QVA LG+ T+YRKIK+Y + Sbjct: 626 MEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIKQYRIK 670 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 168/581 (28%), Positives = 284/581 (48%), Gaps = 56/581 (9%) Query: 55 QLSGNS-RLLRHVLETKTEKV-----VTQSRFDPLCEGCDSKENCREKAFLGTPVILQDR 108 ++ + L K V V + + L C ENC+ K +P L+ Sbjct: 4 NVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKE---SPFPLEHE 60 Query: 109 CVGVISLIAVTHEQQ---EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM 165 + + E + E I + + D V + T+ +S LL+ + + + Sbjct: 61 LLN----MCFNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAI 116 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK---------------------- 203 I++ G+ V D + +N+ + G+ ++ +IG+ Sbjct: 117 IESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKE 176 Query: 204 --PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA 261 P+ ++ + + ++ + +I + + Sbjct: 177 KRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHY 236 Query: 262 NA-------------PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + + + +M+ + R+A + ++V+++GESGTGKEV Sbjct: 237 QRKIVELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEV 296 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 +AR IH S R++K F+ +NC AIPE L+ESE FGY GAFTGA GK G + A GT Sbjct: 297 IARFIHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGT 356 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDE+G++PL LQ KLLRA++ +EI+ +G++ PI+VD+RII+ATN+NLA+ + EGKFRE Sbjct: 357 LFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFRE 416 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNVI I +PPLR+R+E+I + FL + GS +V+EIL++++WPG Sbjct: 417 DLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSE-KKFTREVLEILKEYKWPG 475 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N++E+ V I+ LP +L + + + A+ Sbjct: 476 NIRELENVIEHAYVVSQDE--INVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAI 533 Query: 549 EEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 +EK++I +AL ++ ++ + A LG+ +T+ RKIKKY + Sbjct: 534 SLVEKKLIEDALLKYGTETRAASVLGVNQSTISRKIKKYNI 574 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 173/606 (28%), Positives = 293/606 (48%), Gaps = 86/606 (14%) Query: 14 QPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEK 73 + I+ + A +L +E E A TG + S L+ V+ET + Sbjct: 144 KGIIKVWNLSAARLLGIEAE---------AATGKNI----LDVLSTSNLMD-VIETGKVE 189 Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREF 133 + + + + R +P+ + +G ++++ E Sbjct: 190 TLKKVKLND-----------RYFISNRSPIKKDGKIIGAVAVLQDISE------------ 226 Query: 134 SDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTL 193 + K+ ++ +++ ++++ G+ + D + + N+ Sbjct: 227 -----------LDKMSKELCYVKELNEELDAIVESSFDGLFITDGKGIILRYNKAFELLT 275 Query: 194 GVVQNNIIG------------------------KPIRFRPLTFESNFTHGHMQHIVSWDD 229 G+ + +G K I + T ++ + Sbjct: 276 GIDAHEYLGLSVEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGKLTLTTGNPVIDANG 335 Query: 230 KSELIIGQLHNIQGRQLFLMAFHQS-----HTSFSVANAPDEP-HIEQLVGECRVMRQLK 283 + ++ + +I L ++ H + + E LV MR L Sbjct: 336 EIIRVVCNVRDITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNSENLVVTSAKMRNLL 395 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 ++ R+A S+V++ GESGTGKE++A IH S RR+KPFI +NC AIPE LLESELFG Sbjct: 396 DMVVRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNCGAIPENLLESELFG 455 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y GAFTGA GK+G I+ A+ GTLFLDEIG+MPL LQ K+LR ++ +EI+ +G ++ I Sbjct: 456 YDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFLQNKEIIRVGGTNYI 515 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 VD+RI++ATN+NL + + + +FREDL+YRLNV+P+ +PPLR+R++DI L +F+ + Sbjct: 516 NVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKDDIPPLAAHFIEVFN 575 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 + I+P VV+IL ++ WPGN+REL NL+E +V V ++I S LP L + Sbjct: 576 HKYKKN-KKISPGVVDILMQYDWPGNIRELENLIERMV-VTTMDDIITSEDLPSYLRDKV 633 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRK 583 S + +S A+E +EKQ++ A +++ + +Q+A EL + +T+ RK Sbjct: 634 GISSSYII------VSGIVPLRDAVESVEKQLLERAYAKYRTTRQMAKELKVDASTVVRK 687 Query: 584 IKKYEL 589 KY + Sbjct: 688 AAKYCI 693 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 18/138 (13%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT- 211 NIS T++++ ++ VD++ ++ N +A + LG+ GK I T Sbjct: 118 NSYRNISLELDTIMNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVLSTS 177 Query: 212 -----------------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQS 254 ++ + + D K + L +I Sbjct: 178 NLMDVIETGKVETLKKVKLNDRYFISNRSPIKKDGKIIGAVAVLQDISELDKMSKELCYV 237 Query: 255 HTSFSVANAPDEPHIEQL 272 +A E + L Sbjct: 238 KELNEELDAIVESSFDGL 255 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 180/610 (29%), Positives = 291/610 (47%), Gaps = 77/610 (12%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRL--LRHVL 67 L+ I +I + ++ I ++ RV A K LG+ ++ L VL Sbjct: 11 LLNILDSIHNAIVAIDEEGKVI--IFNKASERVFNYPA-KKALGKNINEVLPFSGLNKVL 67 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +T + G K TP+ + + +G I + +E + Sbjct: 68 KTGESHI-----------GRKFKIGDNLYVVNRTPLYYKGKIIGAIGVAQEINELK---- 112 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + ++ + + T+++ +G +V+D + V N+ Sbjct: 113 -------------------NIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTHANK 153 Query: 188 TALKTLGVVQNNIIGKPIRFRP-------------------LTFESNFTHGHMQHIVSWD 228 G+ ++I+ KPI + IV Sbjct: 154 AIADLFGLKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGRQVVAFKYPIVKDY 213 Query: 229 DKSELIIGQLH-------NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQ 281 +I + + + L + + + + +++G + + Sbjct: 214 KLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTENKIIGNHPSIVR 273 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 LK +I +IAP ++V++ GESGTGKE+VA A+H SGR FI +NCAAIPE L E+EL Sbjct: 274 LKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFIKVNCAAIPENLFEAEL 332 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FGYV+GAFTGA G+ G + AN GT+FLDEIGDMPL +QAKLLR ++ +E+ +G Sbjct: 333 FGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRK 392 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 ++++R+I+ATNQNL + I + KFREDL+YRLNVI + +P LRER ED+ LL+ YF+ Sbjct: 393 TRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEK 452 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN 521 + G+ GI+P+V++I + WPGN+REL N++E N+V G+VI+ LPP +L Sbjct: 453 FNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLV-EGKVIEKKYLPPYILG 511 Query: 522 NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA-LSRHNSKKQVADELGIGIATL 580 E+ L + LE EK++I+ A L +K + A+ LGI L Sbjct: 512 E---------ELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQWL 562 Query: 581 YRKIKKYELL 590 ++++K + LL Sbjct: 563 HKRLKYFNLL 572 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 176/585 (30%), Positives = 282/585 (48%), Gaps = 55/585 (9%) Query: 29 QLEVEIV-DENLCR-------VAGTGAYGKFLGRQLSGNSRLLRHVLE-TKTEKVVTQSR 79 + + I+ D+++ R + G K G G + L+ + E + + Sbjct: 78 GVVLTIIGDQDIIRDQIQMGIIEGADMSEKSAGTNGIGTAFAENISLQISGEEHFI-KVF 136 Query: 80 FDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRH 139 C + +G ++L H + + + Sbjct: 137 QIWTCSSSVVHDE-------------DGNIIGCLNLTGRRQLAHPHTLGLVVAAVKSIEN 183 Query: 140 ISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN 199 K+ + Q + + D+++ G+ VD + ++ +N++A L + + + Sbjct: 184 -----HLKVKKTQNELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKSACDMLHINEED 238 Query: 200 IIGKPI------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLF 247 +I K + R R + + ++ I + NI G Sbjct: 239 VINKNVDTVLDSWKHILQRLRNGQSYEDEEIMYSDKKKRFNINVYPIKDKNSNITGMVGI 298 Query: 248 LMAFHQSHTSFSV-ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + N + + ++G+ M++LK I I+ SPS+V++ GESGTGK Sbjct: 299 FKDIQNVYNLVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGK 358 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E++A++IH S RR+K F+AINC AIP+ L+ESELFGY +GAFTGA G G + AN Sbjct: 359 ELIAQSIHNNSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANE 418 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEIG+MPL +Q LLR ++ I IG + + VD+RII+ATN+NL + I +G F Sbjct: 419 GTLFLDEIGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNF 478 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDL+YRL+VIPI +PPLRER DI +L+ +FL + +LG + P I ++ E L + W Sbjct: 479 REDLYYRLSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGW 538 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N +E +VN+ + + T + DV S+ L D Sbjct: 539 PGNVRELENCIENIVNMNGN----------TSFNFENRTIKKDVNCYSDVSLEYDMC--- 585 Query: 547 ALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYELL 590 +LEE+EK+ I +++ + LGI +TLY KIKKY + Sbjct: 586 SLEELEKRAISICINQCGGNISKACRILGINRSTLYIKIKKYNIK 630 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 167/463 (36%), Positives = 259/463 (55%), Gaps = 20/463 (4%) Query: 143 IFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 + L + + + ++ + VLVVD + + N +A + Q +IG Sbjct: 1 MNERDLERARQERLKLLREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIG 60 Query: 203 KPIR-------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH------NIQGRQLFLM 249 K + + I+S +LH ++G LFL Sbjct: 61 KHVTEFVQSASLLQYIKQGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLT 120 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + ++ ++G + LK + +IA S S+V++ GESGTGKEV+ Sbjct: 121 KPILLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVL 180 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A++IH+LS R PF+AINCAAIPE LLESELFGY +GAFTGA GK G + A GTL Sbjct: 181 AQSIHRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTL 240 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGDMPL LQAKLLR ++ R I +G + I+VD+RII+AT+++L IA +FRED Sbjct: 241 FLDEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFRED 300 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L++RLNVIP+ +PPLRER+ED+ L+ Y+++ +RLG + ++ + + WPGN Sbjct: 301 LYFRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGN 360 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA-- 547 +REL N++EY+VN+ G+++ + LP ++ ++ D+ E + ++ + Sbjct: 361 IRELENMVEYIVNL-EIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYK 419 Query: 548 LEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKK 586 + E+E+Q+I +AL R K++ A+ LGI +ATLYRK++K Sbjct: 420 INEVEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_C5EGG3 Signal-transduction and transcriptional-control protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGG3_9FIRM Length = 585 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 315/592 (53%), Gaps = 34/592 (5%) Query: 9 VLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLE 68 +L +IQ T+ +A +LA +L+++V IV+ + R+AGTG K + +S +L+ + Sbjct: 17 ILDEIQDTVILYANILAQILKIDVTIVNSSFKRIAGTGRLIKEINTDMSEEGHILKKAMV 76 Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISD 128 + ++V + + +C C S+E+CRE + TPV+++ + +GVI +Q+ H Sbjct: 77 SGETQIVNEPGKNEICRDCHSREHCRETFHMSTPVMIKGQAIGVICFTCFNQKQRSHALK 136 Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDN--ISKIFATMIDNMDQGVLVVDDENRVQFVN 186 N F +++ + + +K E N + ++ T++D +D GV+V+D N V N Sbjct: 137 NQEIFKQFLQQFADLISAKAQEALENKKNLAMKELLETIVDRLDAGVIVMDQHNLVVQTN 196 Query: 187 QTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI--QGR 244 + + L + + ++ P+R P NF G ++ ++ S ++G++ + +GR Sbjct: 197 RMCCQILKMREGDLFTVPVRLAP---TGNFVGGLDEYRLTAGQSSYRLVGKVFELDTEGR 253 Query: 245 QLFLMAFHQSHT---SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 F + T S +A + +E++ G ++ +K+ + R+ SPS V+++GE Sbjct: 254 MTFFLFNQAERTLKDSLGLAGKRERSGLERIDGNSPQIQAVKQEMLRMVNSPSPVLILGE 313 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 GT K A AIH+ R + +NC +P+ + ELFG + A++ GK G + Sbjct: 314 KGTEKTKFAMAIHEEGERAGEMVCTVNCETMPQSQIGRELFGTART----AASKGKAGKL 369 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 +AA+ GTL L+E+ ++P +Q +L ++++ ++ GA +V+ RII ++ NL + + Sbjct: 370 EAASKGTLILEEVENLPYDVQLRLGEFLDSQLVVRQGALKGARVNTRIICTSSVNLGELV 429 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 +G+F +YR+N++P+ +PPLRER+ DI LL +L + R + I+ + Sbjct: 430 EQGRFLPAFYYRINILPLYIPPLRERKGDINLLAQKYLQRYARSMNKNIQTISDGFYACI 489 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 R++ WPGN EL N MEY N++ +ID LLP NL + D+ Sbjct: 490 RQYGWPGNKWELRNAMEYAANMMKLDGMIDIGLLPANLRTGVMQAEDDLN---------- 539 Query: 542 DAGGTALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 LE MEK+MI +A+SR+ + KK+ A LGIG+ATLYRK+ KY L Sbjct: 540 ------LESMEKRMIEKAVSRYGTSVEAKKKAAGALGIGMATLYRKLDKYGL 585 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 261/524 (49%), Gaps = 46/524 (8%) Query: 93 CREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQ 152 E D + + V + ++ I N + + + K E+ Sbjct: 53 VTENFCELVKFNNLDVIIETTGVPEVQEKLRQ-IRGNSTALMEAQAANLMMAILKEKEEL 111 Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------- 205 I + ++++M + + V D +++VN + G+ + IG+ I Sbjct: 112 LEFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNIFEASPDG 171 Query: 206 RFRPLTFESNFTHGHMQHI-------------VSWDDKSELIIGQLHNIQGRQLFLMAFH 252 + G + + D K E + + + Sbjct: 172 ALATVLKTGKVVFGQRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMNLMEELK 231 Query: 253 QSHTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 +S T + + ++G+ +R+ L + A S S+V+++GESGTGK Sbjct: 232 KSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGK 291 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E++A AIH S RR PFI +NCAAIP+ LLESE FGY KGAFTGA + K G + A+ Sbjct: 292 ELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKS-KIGKFELAHG 350 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIGDM L+LQAKLLR ++ E +G + I+VD+R+I+ATN+NL + I +G+F Sbjct: 351 GTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRF 410 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDL+YRLNV+ IT+PPLR R+ED+ LV + + R+LG GI+ D E+L + W Sbjct: 411 REDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEVLFSYDW 470 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E V V E++ ++ + + DV + Sbjct: 471 PGNVRELENVIER-VMVTADEEILTKKNFIQHVNQFRMSSERDVDLMP------------ 517 Query: 547 ALEEMEKQMIREALSRHNS----KKQVADELGIGIATLYRKIKK 586 +E+ME+ +IR+A+S+ + K++ A L I +ATLY K+KK Sbjct: 518 -IEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 178/514 (34%), Positives = 271/514 (52%), Gaps = 44/514 (8%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 V + ++ VI L+ + ++ +D ++ +++ F Sbjct: 99 VPVLNKEGKVIGLLCKAKMVTTLFRHSEQDLTDL---------EHTAKELETVKALNETF 149 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFESN 215 T+++ + G++VVD++ ++ VNQ L + +IGKPI + + Sbjct: 150 DTVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGL 209 Query: 216 FTHGHMQHIV--------SWDDKSELIIGQLHNIQGRQLFLMAFHQSH-----------T 256 + I S K ++G + L Sbjct: 210 SQTSEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKVTFFQ 269 Query: 257 SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 N + ++ +V E M++LK IS +A S S+V++ GESGTGKE VA AIH Sbjct: 270 EELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLG 329 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R PFI +NCA+IPE L+ESE+FGYV GAFTGA+ NGK G I+ A+ GTLFLDEIG+ Sbjct: 330 SDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGE 389 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 MPL LQAKLLR ++ REI +G++ I+V+IRI++ATN+ L+ IA+G+FR+DL+YRLNV Sbjct: 390 MPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNV 449 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 I + LPPLRER EDIE L H+F+ L + GI P+ + L ++ WPGN+REL N+ Sbjct: 450 INLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELENV 509 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E VN SG +I+ LP +++ T + + + H L ++E+ MI Sbjct: 510 VERAVNYTRSG-LIELIHLPHQIISGNTALGQVMNKKTIRHQDR-------LGQIERDMI 561 Query: 557 REALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 AL + +K + A L + + LY K+ KY+L Sbjct: 562 AAALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDL 595 >UniRef50_UPI000197326E probable transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197326E Length = 573 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 190/591 (32%), Positives = 308/591 (52%), Gaps = 28/591 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 + L ++ ++ F A ++E + D T Y K G + ++ V+ Sbjct: 2 TQLEDMRSAVEHFVSAAAEAFRVEAAVFDNESNLFFCTPTYLKKKGNAVHYA--FIQDVI 59 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 +VT+ P C GC E+C + + GVIS A T E Q+ +S Sbjct: 60 VNG-NVLVTEPGKMPACIGCRFNEHCPATMEILCCIHSGTEVAGVISFTAFTKEGQKRVS 118 Query: 128 DNLREFSDYVRHISTIFVSKL--LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + + + + +S++ L L D G + + ++ +Q +L+ D V Sbjct: 119 AHTDIYLNAITKLSSLIGEYLQQLSDDGSAADTINLIENLMALYEQPLLLTDPNGVVLRY 178 Query: 186 NQTALKTL---GVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 N A K L V ++ + I + + + VS + + + +I Sbjct: 179 NSLAAKILKFCNVSATSL--RQIFSEDTARKITSGNDLYEKKVSIGENTAKVTT--RSIY 234 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + F + A + ++L+G + ++++I R+A SP+ +++ GE+ Sbjct: 235 SGDHIHSILVRISNEFYESQA-ESGSFQKLIGSSKEFSHIQKMIKRVADSPTPILITGET 293 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE+VAR+IH+ S R PF+AINC++IPE L ESELFGY +G+FTGA GK G I+ Sbjct: 294 GTGKELVARSIHEQSRRAKYPFVAINCSSIPENLFESELFGYEEGSFTGAKKGGKMGKIE 353 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A GTLFLDE+G+MPL +Q KLLR ++ E+ +G++ I +DIRI++ATN++LA I Sbjct: 354 LAQGGTLFLDELGEMPLSVQPKLLRVLQEYELERVGSTKKIHLDIRIVAATNRDLADMIK 413 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 EGKFREDLFYR++VI I LPPLRER++DI + +L L R+ + I+ + ++ Sbjct: 414 EGKFREDLFYRISVINIKLPPLRERKDDIIPISKNYLELLHSRMSTPLRKISSEAEKLFL 473 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+REL N++EY N+ G+ ++ + LP +L++ E S+ E AHL Sbjct: 474 NYPWPGNIRELQNVIEYAANLC-DGDTLNPSDLPEHLISRLNLEFSEKQEPRSAHLP--- 529 Query: 543 AGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 + EKQ I+E L+ + KK++A LGI + TLYRK+ + +L Sbjct: 530 ------DSQEKQ-IQELLATYGHTLEGKKRIAAALGISLRTLYRKLNQMQL 573 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 174/597 (29%), Positives = 285/597 (47%), Gaps = 67/597 (11%) Query: 24 LASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGN-SRLLRHVLETKTEKVVTQSRFDP 82 L S+ V I D + + K G+ + + + + E + ++ Sbjct: 131 LDSIYNPVVAI-DAEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFEDSQLIRIIRTGKAE 189 Query: 83 LCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIST 142 + TP+ + R VG +++ E + Sbjct: 190 STQKVRLGGKV--YMTNRTPIFMGGRIVGATAVLQDISELEA------------------ 229 Query: 143 IFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 + + IS +I++ G+ V D E R VN+ +T G+ + +++G Sbjct: 230 -----ISNELEHTRRISMELDAIIESSFDGIYVTDGEGRTLRVNKAYERTTGIRREDVVG 284 Query: 203 KPI------------------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL 238 + I + L++ + Sbjct: 285 HTMAELVEQGFFNESVSMRVLENRKGESLVQKVKTGKTVMVTGTPIFDDKGEISLVVTNV 344 Query: 239 HNIQGRQLFLMAFHQSH------TSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPS 292 ++ + + +V + M+++ L R+A Sbjct: 345 RDVTELYNLQNELGRMEVLRTWYENELEQLRESAGAAPSVVIRSKKMKEVHELAMRLARV 404 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 ++V+V GESG GKE+ A IH S R++KPF+ I+CAAIPEQLLESELFGY GAFTGA Sbjct: 405 DATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCAAIPEQLLESELFGYEAGAFTGA 464 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 A GK G+ ++A+ GT+FLDEIG+MPL LQAKLLR ++ ++I+ +GA+ + VDIRI++A Sbjct: 465 KAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSMDVDIRILAA 524 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 TN++L+Q + +G FR DL++RLNV+P+ +PPLRER+E I ++FL + R+ G Sbjct: 525 TNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYNRKYGFA-KQ 583 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 IAPDV++IL + WPGN+REL N +E +V V G+VI+ LP L + Sbjct: 584 IAPDVLDILYDYDWPGNVRELENTVERMVVV-TKGDVIEPADLPEKLRI--------APK 634 Query: 533 VSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 AH + +ALE +E++++++AL H S +VA LG+ +T+ RK+++Y + Sbjct: 635 SGLAHALGGGSLKSALEGLEREILQQALETHGSTHKVAKALGVNQSTVVRKLQRYGI 691 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 18/133 (13%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPL 210 + + + +D++ V+ +D E V F N++ K G I+GKPI + + Sbjct: 123 VMRRMSIFLDSIYNPVVAIDAEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFEDSQLIRI 182 Query: 211 TFESNFTHGHMQHI-----------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 + + + L +I + + Sbjct: 183 IRTGKAESTQKVRLGGKVYMTNRTPIFMGGRIVGATAVLQDISELEAISNELEHTRRISM 242 Query: 260 VANAPDEPHIEQL 272 +A E + + Sbjct: 243 ELDAIIESSFDGI 255 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 167/566 (29%), Positives = 275/566 (48%), Gaps = 45/566 (7%) Query: 35 VDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCD-----S 89 +D +L TG +++ ++ + +L K + + +C+ C Sbjct: 1 MDLDLLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKEGQSCKNLKMFDICKKCPIDYYNK 60 Query: 90 KENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLRE--FSDYVRHISTIFVSK 147 E I+L + + F+ + I +K Sbjct: 61 HSTFPEFEDFN------------ITLSCCSKKVCYSFKPVFENGEFAGIIEEIRD--STK 106 Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF 207 + + + ++D++ ++VVD++ ++ NQ A L + +I G + Sbjct: 107 VNQYIEIIKKEKEFSHLILDSVIDAIVVVDNQGKIINYNQNAKNLL-CREVDIKGMNLSL 165 Query: 208 RPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI--QGRQLFLMAFHQSHTSFSVANAPD 265 I+ ++ + + G + S A + Sbjct: 166 LIKKDLKELPSSREDIIIETPAYGKIKVSAVFTRLKSGEGSIFSFYVVPDCMLSQEAASN 225 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + L+ + +M + + +A + ++V++ GESGTGK V+A+ IH S RR+KPF+ Sbjct: 226 KSR---LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFV 282 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 INCAAIP+ LLESELFGYVKGAFTGA + K G ++ A+ GTLFLDEIG++P LQ+KL Sbjct: 283 KINCAAIPDNLLESELFGYVKGAFTGAVKD-KPGKVELADGGTLFLDEIGELPTYLQSKL 341 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 L I+ +E +G + +VD+RII+ATN++L+Q + EGKFREDL+YRL VI I +P LR Sbjct: 342 LHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALR 401 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+EDI L++YF+ L++++ GI+P+ V +L + +PGN+REL N++E V + Sbjct: 402 ERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVIL-A 460 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN- 564 G+ I+ + LP ++ N + + EKQ I L N Sbjct: 461 KGKFIEVSDLPDEIVYNTKILTQNDLDEEID---------------EKQKILRVLESVNW 505 Query: 565 SKKQVADELGIGIATLYRKIKKYELL 590 +K + A L I TL+RK+KKY L+ Sbjct: 506 NKSKAAKILNIDRVTLWRKLKKYGLV 531 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 168/610 (27%), Positives = 285/610 (46%), Gaps = 77/610 (12%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSG--NSRLLRHVL 67 L + ++ + ++A + +++E+ RVAG K +G ++ + L ++ Sbjct: 8 LQTVLDSV--YNGIVACDTDGRIILINESAARVAGQPK-DKLMGARVDQVFPNTGLLEII 64 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVISLIAVTHEQQEHI 126 T R R +P+ VG I + E + Sbjct: 65 RTGEN------RPHQ-----RLNFQGRLLLSNRSPIRNADGELVGAIGVFQDNSELESMT 113 Query: 127 SDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVN 186 +++ +I++ G+ + D + VN Sbjct: 114 -----------------------HAFKEEKKVAEELQDIIESSYDGMWITDGQGYTLHVN 150 Query: 187 QTALKTLGVVQNNIIGKPIR-------------------------FRPLTFESNFTHGHM 221 + G+ + ++GK ++ + Sbjct: 151 SAYERISGMKKEEVLGKHMQELVDKGYFSDSVTLHVLEKKERVTMMHEIRKTGKRALITG 210 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMAF-----HQSHTSFSVANAPDEPHIEQLVGEC 276 I + + ++ + +I + +A + + +V E Sbjct: 211 NPIFDENGEIVRVVTNVRDITELLNLKQDLEDKAKQAARYQNELAQLRSKSIYDDIVVES 270 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 MR + L + + S+V+++GESG GKEVV + + + S RR++PFI +NC AIPE L Sbjct: 271 PQMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQIVVRSSERRDEPFIKVNCGAIPENL 330 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 LESELFGY KG+FTGA GK G+ + A+ GT+ LDE+ ++PL LQ KLLRAI+ +EI+ Sbjct: 331 LESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEVAEIPLNLQVKLLRAIQEQEIIR 390 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 +G + P+++D+RII+ATN++L + + G+FREDLFYRLNVIPIT+PPLRER+EDI L+ Sbjct: 391 VGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRLNVIPITVPPLRERREDIPALIE 450 Query: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 FL + + +AP+ VE L + WPGN+REL N++E +V + EV LP Sbjct: 451 LFLCKYNEKYRLN-KTLAPETVERLVSYDWPGNVRELQNIVERMVVLSRDDEV-GPDALP 508 Query: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIG 576 L + G T+ +VS AL E+EK+++ +AL ++ + ++ A+ LG+ Sbjct: 509 LQLKSVGKTDADFHVDVSGVV-----PLKDALFEVEKKLVVKALQKYGTTRRAAEALGVD 563 Query: 577 IATLYRKIKK 586 +T+ RK ++ Sbjct: 564 QSTVVRKYQR 573 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 266/485 (54%), Gaps = 30/485 (6%) Query: 121 EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDEN 180 E ++ L++ D +++I + +E P + + ++D +++G++ +D Sbjct: 44 EIEKTDKKTLKQIIDDLKNIPKVLKVHPIE-IMPYEQKEQQLRAVLDTVNEGIIAIDSHG 102 Query: 181 RVQFVNQTALKTLGVVQNNIIGKPIRFRPL-------TFESNFTHGHMQHIVSWDDK--- 230 + NQ+ + G+ +IG+ + T ++ ++ + + I++ + + Sbjct: 103 TISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLH 162 Query: 231 ----SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 I +L NI G L + P ++ MR + + Sbjct: 163 YLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMA 222 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 ++A + ++V++ GESGTGKE+ ARAIH S RR KPF+ +NCAA+PE LLESELFGYV+ Sbjct: 223 KKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVE 282 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAFTGA GK GL++ A+ GTLFLDEI ++P LQAKLLR ++ ++ IG I VD Sbjct: 283 GAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVD 342 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 IRII+ATN+NL + EGKFREDL++RLNV P+ +PPLRER EDIE+L ++FL+ +R Sbjct: 343 IRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRR 402 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 G Y I + + L+ + WPGN+REL N++E + + G VI++ + Sbjct: 403 GIQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDG-VIEAKDI----------- 450 Query: 527 QSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 + + + + A+ ++EK++I AL ++ S +Q A LG+ TL KIKK Sbjct: 451 ---ILDNPQNTYFVARTLEEAVNQVEKELIERALKQYPSIRQAARSLGVTHTTLRNKIKK 507 Query: 587 YELLN 591 +L N Sbjct: 508 LKLTN 512 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 243/473 (51%), Gaps = 43/473 (9%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF---- 207 + +++ G+ + D + + VN + G+ ++ ++GK + Sbjct: 26 ILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQEMVDK 85 Query: 208 ---------------RPLTFESNFTHGHM---------QHIVSWDDKSELIIGQLHNIQG 243 + +T T G ++ + + ++ + +I Sbjct: 86 GFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNVRDITE 145 Query: 244 RQLFLMAFHQSHT------SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 ++ + + +V +++ + +++A S+V+ Sbjct: 146 IVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDSTVL 205 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESG GKE+VA IH LS R P I INC AIPE LLESELFGY GAFTGA GK Sbjct: 206 ITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGARKQGK 265 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G+ + A GTLFLDE+G++ L LQ KLLR ++ E+L +G PI VD+RI++ATN++L Sbjct: 266 PGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAATNKDL 325 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + + KFR+DL+YRLNV+ I +PPLRER+EDI LL +FL ++ G APDV Sbjct: 326 MEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFN-KRFAPDV 384 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 ++ L + WPGN+REL N++E ++ + S E I + LP N+ N + + + Sbjct: 385 IDRLSAYPWPGNIRELENVIERVMVMTKSDE-IRTIHLPGNIKNLSSLQN-------DIM 436 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 S A+E +EK +I +AL ++ S ++VA L + +T+ RKIKKY+L Sbjct: 437 FSEIMPLKKAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKLS 489 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 165/520 (31%), Positives = 263/520 (50%), Gaps = 39/520 (7%) Query: 103 VILQDRCVGVIS--LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 + + + VI +I T E Q H+ + IS KL + + + Sbjct: 71 INYYGKTLSVIKTPIIEPTIENQCHLGNYY-----IFEDISD--SVKLKRELSNARSSAN 123 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLTFE 213 +++ G++++D + N + G+ + +GK + R + Sbjct: 124 AMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISEQEALGKHVTEVIENTRMHKVLET 183 Query: 214 SNFTHGHMQHIVSWDDKSELI-------------------IGQLHNIQGRQLFLMAFHQS 254 G +Q I + + + I ++ + R Sbjct: 184 GKPEIGEIQKIKGCEMVATRVPIYEEGEIVGVLGKVLFRDIKEVKALAERLDAATNELDY 243 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 + + + E +VG + + + K + + S S+V++ GESGTGKE+ A AIH Sbjct: 244 YKGEVRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIH 303 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S RR FI +NCAAIPE LLE+ELFGY KGAFTGA+ GK G + AN GT+FLDEI Sbjct: 304 DGSLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEI 363 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GDMP +Q KLLRA++ RE+ IG+ I +D+RII++TN+NL Q IA+ KFREDL+YRL Sbjct: 364 GDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRL 423 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NV I +PPLRE ++D+E L+++ + +G G++ + +IL + WPGN+REL Sbjct: 424 NVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELK 483 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLN--NGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 N++E +NV G +I +P LL +Q++ S + + ++E E Sbjct: 484 NVLERSMNV-AKGNIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAE 542 Query: 553 KQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELLN 591 K I AL + N+KK+ A+ L I + LY+K+++Y + + Sbjct: 543 KLAIETALKQTNNNKKKAAELLNIHRSGLYKKLEEYNISD 582 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 50/137 (36%), Gaps = 8/137 (5%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGH 220 +F ++++ ++ ++V D+ N+++ N A +T + N+ +G+ I + Sbjct: 1 MFDSLMNAINDALIVTDEHNKIECFNYKAEETFNISHNH-LGEKIEGIIFIPDDLKKSDT 59 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMR 280 + + G+ ++ + + + + E + + ++ Sbjct: 60 ITEGKKESQRRINYYGKTLSVIKTPIIEPTIE------NQCHLGNYYIFEDI-SDSVKLK 112 Query: 281 QLKRLISRIAPSPSSVM 297 + A + +V+ Sbjct: 113 RELSNARSSANAMENVL 129 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 167/591 (28%), Positives = 283/591 (47%), Gaps = 45/591 (7%) Query: 19 RFARMLASVLQLEVEIVDENLCR-VAGTGAYGKFLG----RQLSGNSRLLRHVLETKTEK 73 + + S+ +E+++ ++ R G Y + +G + S ++ VL Sbjct: 64 QLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLN----- 118 Query: 74 VVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREF 133 + + ++ E G +I+ +G + + + IS Sbjct: 119 --LNLIKIEIKKETEALFQIAEAKEKGAKIII-GDTIGACCAAQLGLKSRLIISGKEAVA 175 Query: 134 SDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTL 193 + +L E ++ T++D + G++ VD + R+ N+ A K Sbjct: 176 NALSE------AFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIF 229 Query: 194 GVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHIVSWDDKSELI--------IGQL 238 + + +IGK + R + G +Q I + + +G + Sbjct: 230 KKLPSEVIGKKVETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAV 289 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 Q + + + ++ M+ + + A S+V++ Sbjct: 290 ATFQDVAEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLI 349 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GE+GTGKE+ A++IH S R+N PF+AINCAA+PE LLESELFGY +GAFTGA GK Sbjct: 350 LGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKA 409 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 GL + A+ GT+FLDEIG+MP+ LQ+KLLR I+ ++++ IG I VD+RII ATN+NL Sbjct: 410 GLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLI 469 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 + I EGKF+ DLFYR++++ I +P LRER+EDIE+LV YF+ ++ GI + Sbjct: 470 EMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGM 529 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 E+L+K +PGN+REL +++E + G +ID + +D + Sbjct: 530 ELLKKWDYPGNVRELESIIERACAIC-EGNIIDVRDIKLY---------NDQDSMENKVS 579 Query: 539 SLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYE 588 S L+E+EK+ I++ + + + A +LGI TL+RK+K + Sbjct: 580 SQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN 630 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 160/611 (26%), Positives = 287/611 (46%), Gaps = 78/611 (12%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 S L I ++ + ++A + E+ + +++ + G + LG + + Sbjct: 7 SDLEIILDSV--YNGIIAINKEGEINLFNKSASEILGMSK-EEVLGCDIREI------IP 57 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHIS 127 ET KV+ N + +P+ + +G + + E Sbjct: 58 ETGLFKVLES---SQTFTTEKFVVNKKTLLTNRSPIFKEGELIGALGIFQDISE------ 108 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + + ++ I+ +I++ G + D E +N Sbjct: 109 -----------------LEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINS 151 Query: 188 TALKTLGVVQNNIIGKP------------------------IRFRPLTFESNFTHGHMQH 223 + + G ++G+ + F Sbjct: 152 SYERISGAKAEEVVGRHMKELEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNP 211 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQ-----SHTSFSVANAPDEPHIEQLVGECRV 278 + D ++ + +I + H + ++ ++V + +V Sbjct: 212 VFDSDGNITKVVTNVRDISELLELKDELEKTQALTRHYKEKLTEMEEKLGEGEIVAKSKV 271 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 ++L +R+A S+V++ GE+G GKE+VA+ IH+ S R +PFI INC AIPE LLE Sbjct: 272 KKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLE 331 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFG+ G+FTGAS NGK G + AN GTL LDEIG++ LQ KLLRA++ +EI IG Sbjct: 332 SELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIG 391 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 P Q+D++II+ TN++L + +++G+FREDL+YRL+V+P+ +PPLRER +DI L+ ++ Sbjct: 392 GVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHY 451 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + + G G++ +E L + WPGN+REL N++E LV +VP +I+++ LP Sbjct: 452 IRKYNEKYGVN-KGLSSSALEELVSYNWPGNVRELENMIERLVIMVPEN-LIETSDLPQQ 509 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIA 578 + S + + + A+ ++EK+M+++A+ + N+ ++ A LG+ + Sbjct: 510 IKE------------SNVKILENLSLPDAVSKLEKRMLQKAMEQSNNTREAAQILGVAQS 557 Query: 579 TLYRKIKKYEL 589 T+ RK+ KY L Sbjct: 558 TVVRKLDKYGL 568 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 18/133 (13%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL------T 211 + ++D++ G++ ++ E + N++A + LG+ + ++G IR Sbjct: 5 QNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIREIIPETGLFKV 64 Query: 212 FESNFTHGHMQHIVS------------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 ES+ T + +V+ + + +G +I + ++ Sbjct: 65 LESSQTFTTEKFVVNKKTLLTNRSPIFKEGELIGALGIFQDISELEHISQELAKTKAIND 124 Query: 260 VANAPDEPHIEQL 272 A E + Sbjct: 125 ELRAIIESSYDGF 137 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 173/602 (28%), Positives = 284/602 (47%), Gaps = 49/602 (8%) Query: 10 LMQIQPTIQRFARMLASVLQLEVEIVD----ENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 L + ++ + +++ + + +V AGT K +G G LL+ Sbjct: 77 LENMLSHVECYI-IISDEQGVILSVVKALGGNGFKLEAGTIWTEKTIGTCSHGMCILLKS 135 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQ-DRCVGVISLIAVTHEQQE 124 ++ LC A P+ + G +++ + Sbjct: 136 PIQ--------------LCGPEHFSHIFENIACSSAPIFDENGNLEGTLTITSPN----- 176 Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 + + + ++ + +IF ++N ++ +L DD+ ++ Sbjct: 177 -LRSHNSQTLGLAISMAMGIQKQFQIALQN-----EIFDAALENTEEIMLFSDDDGKIIR 230 Query: 185 VNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNFTHGHMQHIVSWDDKSELI--- 234 N ALK + + ++IG + F E+ T H+ + + K + Sbjct: 231 TNMNALKIIELFGRDLIGSQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYTKKKLFLTSI 290 Query: 235 --IGQLHNIQG-RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 I I G L H + S A + + ++G +LK + + A Sbjct: 291 KPIKSKDKISGYIVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMKLKSMAKKFAH 350 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S++++ GESGTGK+V A+AIH R N P+IA+NCAAIP+ L+ SELFGY GAFTG Sbjct: 351 FNSNILIQGESGTGKDVYAQAIHFE-NRPNGPYIAVNCAAIPQNLIASELFGYEGGAFTG 409 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A GK G I+ AN GTLFLDEIGDMPL LQA LLR +E + I+ +G S I VD R+I+ Sbjct: 410 AERQGKPGKIELANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLIT 469 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NL + +FREDL+YR++V +++PPLRER DI L+ +F+ +++ G P Sbjct: 470 ATNKNLLDLVKNNQFREDLYYRISVFKLSVPPLRERGSDIVQLIEHFIRIYSSNQGIDEP 529 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT 531 ++ +L ++ WPGN+R+L N + Y V + G +I LP +L+ + Sbjct: 530 ILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMSNEG-IIRPENLPEEILSYQPPSGLTLA 588 Query: 532 EVSEAHLSLDDAGGTA--LEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYE 588 + + ++E+EK+ I +AL N+ + A LG+ +TLYRKIK+YE Sbjct: 589 QPEPEPSPNEIILDNTPSMKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIKEYE 648 Query: 589 LL 590 + Sbjct: 649 IS 650 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 165/584 (28%), Positives = 275/584 (47%), Gaps = 52/584 (8%) Query: 24 LASVLQLE-VEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDP 82 + VL + V V L + G + +G + L ++ + Sbjct: 76 ILEVLGDDKVLAVSHGLEMIPGAYMDEEHIGTN------AMGTALAEGIPVQISG---EE 126 Query: 83 LCEGCDSKENCREKAFLGTPVILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIS 141 + C P+ +G ++L + H + ++ + ++ Sbjct: 127 HFVKAYHRWTCS-----AAPIRNSIGEAIGTLNLTGYSEYVHSHTLGMVAAAANAIAYML 181 Query: 142 TIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII 201 E K T++D++D G+ V + ++ +NQ A L + I+ Sbjct: 182 ES-----KEVNNKLFLAKKSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEIL 236 Query: 202 GK--------------PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLF 247 G + E + + + I+ + N+QG Sbjct: 237 GMEGIKLIEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCM 296 Query: 248 LMAFHQSHTSFSVA-NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + + ++++G ++ +I+ SPS+V+++GESGTGK Sbjct: 297 IREIKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGK 356 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 EV A++IH S RR++PF+AINC A+P L+ESELFGY GAFTGA G G + A+ Sbjct: 357 EVFAQSIHNHSERRDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADG 416 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEIG+MPL +QA LLR +E ++ +G + I VD+RII+ATN++L + F Sbjct: 417 GTLFLDEIGEMPLDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNF 476 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R DL+YRLNV+P+ LPPLRER+ DI LL+ YF+ + +L + D+++ + + W Sbjct: 477 RGDLYYRLNVLPLILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTW 536 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 GN+REL N++E N++ SGE+ N + +E+ + Sbjct: 537 RGNIRELENVIE---NLMNSGEL------------NFLERVELSSTSNESSPRVYSLESE 581 Query: 547 ALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 LE+MEK+ I + L+++ + Q A+ LGIG TLYRK+ KY++ Sbjct: 582 PLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAKYKI 625 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 252/492 (51%), Gaps = 27/492 (5%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQ 171 V ++V ++ + L + ++ + ++ F ++D + Sbjct: 145 VGDAVSVRSAKEMGLQAILVTSGKEAISQAIREAREVAMVRRRERARAEQFKAILDFAYE 204 Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNFTHGHMQH- 223 G++ D E R+ VN A K LG+ + ++G+P R + G + Sbjct: 205 GIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQVLQSGQKRLGELHRA 264 Query: 224 -------IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 + +G + Q ++ + E +V + Sbjct: 265 GNTLVAENIIPVIAGRETVGAVATFQDVSHLQAVEARARQELYLKGHVARYTFEDIVTQS 324 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 VM ++ + A + ++V++ GE+GTGKE+VA++IH S RRN PF+A+NCAA+PE L Sbjct: 325 PVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPFVAVNCAAVPENL 384 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 LESELFGY +GAFTGA GK GL + A+ GTLFLDEIG++ L LQA+LLR ++ + I+ Sbjct: 385 LESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLLRVLQQKAIMR 444 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 +G + VD+RII+AT++NL IA FR DL+YRLNV+ I LPPLRER ED+ LL+ Sbjct: 445 VGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRERPEDLPLLIK 504 Query: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 + +RR G + P + +++ ++ + WPGN+REL N++E LV + SGE +++ L Sbjct: 505 ALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLVVL-RSGEEVEAGDLD 563 Query: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK-QVADELGI 575 L Q L A L EME ++IR L+ + K + LG+ Sbjct: 564 EILEPAENQPQP----------VLQLALRGTLAEMEGEIIRRTLALTGNNKEETCRRLGL 613 Query: 576 GIATLYRKIKKY 587 TL+R++K + Sbjct: 614 SKTTLWRRLKSW 625 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 165/448 (36%), Positives = 250/448 (55%), Gaps = 24/448 (5%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL-------------- 210 ++D++ GV+ VD E V + N+ + G+ ++ ++G+ + Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTPL 91 Query: 211 --TFESNFTHGHMQHIVSWDDKSELI--IGQLHNIQGRQLFLMAFHQSHTS--FSVANAP 264 F H + +IV + ++ + +I ++ + N Sbjct: 92 LGVRTRVFDHVVVSNIVPVYHQGRMVGAVSVFRDITEVLALSRQLDEARNTIDLLRENLT 151 Query: 265 DEPHIEQ--LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 P E ++G+ +++ + A S V++ GESGTGKEV+AR IH S RR++ Sbjct: 152 AAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNRSARRSQ 211 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 P IA+NCAAIP LLESELFGY +GAFTG+ G+ GL Q A+ GTLFLDEIGDM LQ Sbjct: 212 PLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGDMDPGLQ 271 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLRA+++ EI +G ++ +V++RIISATNQNLAQ + E +FREDL+YRL VI + LP Sbjct: 272 AKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRVIHLVLP 331 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+ D+ L + + + RLG +P + L + +PGN+REL N++E V Sbjct: 332 PLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENVVEQAVV 391 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-TALEEMEKQMIREALS 561 + G+VID LPP+++ T + L L+D G LEE+E++++ L Sbjct: 392 L-AEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVLEAGLR 450 Query: 562 RHNSKKQVADELGIGIATLYRKIKKYEL 589 +SK ++A LG+ ATLYRK+ +Y L Sbjct: 451 AFDSKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 235/474 (49%), Gaps = 41/474 (8%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG---------KPIR 206 N S + T++D M + V +VD N VQ N+ A + + ++G + IR Sbjct: 68 QNQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIR 127 Query: 207 FRPLTFESNFTHGHMQHI------------VSWDDKSELIIGQLHNIQGRQLFLMAFHQS 254 + + + + I +I + Sbjct: 128 LLDALRQGTSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHT 187 Query: 255 HTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + G ++ ++A + ++V++ GESG GKE+ Sbjct: 188 TAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKEL 247 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A+AIH+ S R KPFIAINC AIP L ESELFGY GAFTGA GK G ++ A+ GT Sbjct: 248 FAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGT 307 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIG++PL LQ KLLRA++ R+ +G + PI V+ RI++ATN+ L Q +A+G+FRE Sbjct: 308 LFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFRE 367 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV + +PPLRER+ED+ LV F+H ++ P I+P+V++ L ++ WPG Sbjct: 368 DLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPG 427 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+R+L N++E L + +G VI LP + ++ + + + Sbjct: 428 NIRQLRNVIERLSILQENG-VILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPI 486 Query: 549 ------------EEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 EK+ I AL R + +KK A+ LG+ TLY K+KK+ + Sbjct: 487 IRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNI 540 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 178/613 (29%), Positives = 293/613 (47%), Gaps = 72/613 (11%) Query: 5 TTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGN-SRLL 63 + S + +I + L + + ++D + + +F+G + + Sbjct: 98 SEDSEIDEIIDASIVANEQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKI 157 Query: 64 RHVLETKT--EKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHE 121 V+ + +++ + G N R +P+ + D+ +G IS+ Sbjct: 158 NEVIPSSQLPHVMLSNLKK----YGSTLHINNRVGLVNSSPLFINDKIIGAISV------ 207 Query: 122 QQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 ++ +S I K I++ F +++N + VD+ Sbjct: 208 ---------------IQDVSDIIGMK---------EINEKFTKILENSQDMICFVDENGI 243 Query: 182 VQFVNQTALKTLGVVQNNIIGKPI----------------RFRPLTFESNFTHGHMQHI- 224 + ++N +K V +++IGK I + I Sbjct: 244 INYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIHKKNGINVISTID 303 Query: 225 -VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS------VANAPDEPHIEQLVGECR 277 + D + + +I + + + ++S + ++G R Sbjct: 304 PLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTR 363 Query: 278 VMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLL 337 ++ + + + + + S+V++ GESGTGKE++A+AIH S R+NKPF+ +NCA+IPE LL Sbjct: 364 TLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLL 423 Query: 338 ESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPI 397 ESELFGY KGAFTGA K G A+TGT+FLDEIGDMPL +Q KLLR ++ REI + Sbjct: 424 ESELFGYEKGAFTGAV-QSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESV 482 Query: 398 GASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHY 457 G +P +D+R+I+ATN+NL + I +G FREDL+YRLNV+ I LPPLRER+EDI L + Sbjct: 483 GGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEH 542 Query: 458 FLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPP 517 F+ ++L GI D + +L ++ WPGN+REL N+ME +N+ G+ IDS+ LP Sbjct: 543 FITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLC-DGDYIDSSYLPS 601 Query: 518 NLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGI 577 L E +L++D EE EKQ+I A+ ++ S + LG+ Sbjct: 602 YLK---------PVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTH 652 Query: 578 ATLYRKIKKYELL 590 T+ K KKY + Sbjct: 653 RTVSLKCKKYNIE 665 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 60/169 (35%), Gaps = 5/169 (2%) Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 LI +E ++I+ S+ E D +++++ G++ Sbjct: 67 LIGSKNEGMIEKLAVQSLLEFIDKNINNPIESEDSEIDEIIDASIVANEQVLESLPIGIV 126 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT----FESNFTHGHMQHIVSWDDK 230 V+D + + +NQ AL+ +G + ++ GK I + + +++ Sbjct: 127 VIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNLKKYGSTLHINNR 186 Query: 231 SELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVM 279 L+ I + + ++ Q + +E +++ + M Sbjct: 187 VGLVNSSPLFINDKIIGAISVIQDVSDIIGMKEINE-KFTKILENSQDM 234 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 146/492 (29%), Positives = 251/492 (51%), Gaps = 41/492 (8%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGP-GDNISKIFATMIDNMDQGVLVVDDENRVQF 184 + +D + ++ K LE+ +++ T+++ GV++VD + + Sbjct: 89 LRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTELLETVMEFAFDGVVMVDKDGYITM 148 Query: 185 VNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHIVSWDDKSELI--- 234 +++ + L V ++IGK R + +Q I + + Sbjct: 149 LSKEYAEFLNVRVEDVIGKHATDVIENTRMHIVAKTGKPEVADLQRIKGDYMIATRVPII 208 Query: 235 ----------------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 +G +++ R + + + +VG+ Sbjct: 209 KNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKGEFREQNKATYTFHHIVGDSDS 268 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 + + K R A S S+V+++GESGTGKE+ A AIH R F+ +NCAAIP LLE Sbjct: 269 IIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNAGSRAPGSFVKVNCAAIPPDLLE 328 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY +G+FTGA GK G +AA+ GT+FLDEIG++PL +Q K LR ++ +E+ +G Sbjct: 329 SELFGYEEGSFTGAKKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVERVG 388 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 +++ +D+R+I+ATN+NL + + +G+FR DLFYRLNV+ I +PPLR+R++D+ L +F Sbjct: 389 STTSKPIDVRVIAATNRNLEEMVDKGEFRLDLFYRLNVVAIHIPPLRDREKDLGQLCLHF 448 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + GI+ D +L +++WPGN+REL N++E +N++ +G VI S LP Sbjct: 449 IEKLNPIMKKKVDGISKDAQRLLHQYKWPGNIRELENVIERALNMLDNGTVIKSEHLPAK 508 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGI 577 L + + ++ ++E+ EK + AL + ++ + A LGI Sbjct: 509 LTDTPSNHSV-------------ESLAVSIEKAEKTALMNALKQTKGNRSKAASLLGISR 555 Query: 578 ATLYRKIKKYEL 589 +T Y K+ KY+L Sbjct: 556 STFYEKLTKYQL 567 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 173/618 (27%), Positives = 269/618 (43%), Gaps = 56/618 (9%) Query: 2 ELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFL--------- 52 +LA +L + Q L L V I + + G Y + Sbjct: 94 KLAPETRLLCDLVTEAQPHINNLIRKRGLIVTISNPQGYLINMFGDYRALICAEKLNFGP 153 Query: 53 GRQLSGNS---RLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVI-LQDR 108 G S S + L + V+ + CEG C P+ L Sbjct: 154 GANWSEASVGTNAIGTALASGVALTVS--GLEHFCEG-HQSWICS-----AAPIFDLSGT 205 Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGP--GDNISKIFATMI 166 +G I + T + + I S+LL+ Q + + Sbjct: 206 MIGCIDISGPTTSIH-------NIPLPLAINGARIIESQLLKKQANELKQQSVNLVTSAF 258 Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF-------------RPLTFE 213 + + G++V+D ++ VN TA L + Q ++IG + P Sbjct: 259 NAVATGMMVLDPNGIIKTVNPTAAVLLNMSQESLIGCSAQICFEIETALERLKKSPEIHA 318 Query: 214 SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLV 273 + + S + + I ++ L L ++ Sbjct: 319 TMGVTVKWKQRASANARVYPITTPNGSLGCLLLVLYESQNRPHMALPMETKTHDPFNAVI 378 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G + ++AP +S+++ GESGTGKE++A+A+H+ S R KPF+AINC AIP Sbjct: 379 GVSSAILSAVETAKQVAPQMTSILITGESGTGKEIMAKALHRASPRAQKPFVAINCGAIP 438 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +L++SELFGY +GAFTGA+ G G + AN GTLFLDEI +MPL LQ LLR +E Sbjct: 439 HELIQSELFGYAQGAFTGANRGGNPGKFEQANEGTLFLDEIAEMPLDLQVNLLRVLEENS 498 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + +G + PI VD+RI+SAT++NL + I + FREDL+YRL V+ I LPPLR+R D++L Sbjct: 499 VTRVGGNHPIPVDVRILSATSKNLKELILQKTFREDLYYRLKVVKIDLPPLRQRGRDMDL 558 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L +F++ ++ L + P L H WPGN+REL + +E + ++ + Sbjct: 559 LAEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGNVRELKHAIEGAIALMSGDTL---- 614 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADE 572 G + E LS+ D L +EK+ I+ A +R + A Sbjct: 615 --------FGDALCDSPGNLQETALSVPDKERLNLMRVEKETIQLAYARFSGNISHTAKA 666 Query: 573 LGIGIATLYRKIKKYELL 590 LGIG TLY K+ KY++ Sbjct: 667 LGIGRNTLYAKLLKYKIT 684 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 146/466 (31%), Positives = 239/466 (51%), Gaps = 35/466 (7%) Query: 137 VRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV 196 ++ ++ + + + + T+++ +GV V+D+ + VN +G Sbjct: 227 IQDMTDVEG--VAHELETVKELKMTLETVLEVAYEGVAVLDEAGMITLVNARFCNKIGKP 284 Query: 197 QNNIIGKPIRFRPLTFESNFTHGHMQ-----------HIVSWDDKSELIIGQLHNIQGRQ 245 ++NIIG+ I + ++ I + ++ ++ Sbjct: 285 KDNIIGENINRFIPLSHNQMPLSVLEINAKPCVVSTLPITKEGNTKGFVVKIYEDLDNLA 344 Query: 246 LFLMAFHQSHTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + ++ + + + +V + LK + ++ S S+V++ Sbjct: 345 DIVQQINRINMQLNYYKNELYKVNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLIT 404 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE+ A +IH S RR +PFI +NC+AIP +L E+ELFGY GAFTGA GK G Sbjct: 405 GESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPG 464 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + A+ GT+FLDEIGDMPL LQ+KLLR I+ +EI +G +VD+RII+ATN++L + Sbjct: 465 KFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKR 524 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + EG FREDL++R+NV+ + +PPLR+R++DI LL F+ + +LG GI +E Sbjct: 525 MVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALE 584 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 L ++ WPGN+REL N++E ++N SG +I+ LP ++ + T Sbjct: 585 ALTRYDWPGNIRELENIIERMLNYRESG-LIELQDLPEEIVGRPGGMAAKAT-------- 635 Query: 540 LDDAGGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKI 584 L ME + I+ AL +K + A LGI + LY K+ Sbjct: 636 ------QTLAVMEMETIQAALAEAGGNKSKAARLLGISRSKLYEKL 675 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 148/459 (32%), Positives = 231/459 (50%), Gaps = 34/459 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII-GK------PIRFRP 209 + F T++D +++ + +D +RV N A + V I+ G+ +R Sbjct: 128 KLRCFFETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKILSGRIEDFFSNLRISN 187 Query: 210 LTFESNFTHGHMQHI------------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 E G V K + +I +++ T Sbjct: 188 CMHEKKEVRGLYHQPCEGAHVLINSAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQ 247 Query: 258 FSVANAPDEP------HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + +L+G +++L +I+ + ++V++ GESGTGKE++AR Sbjct: 248 VKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLAR 307 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH+ S R PFI +NC AIP L ESELFGY GAFTGA GK G+ + AN GTLFL Sbjct: 308 AIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFL 367 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE+G+MP+ +QAKLLR ++ +G S + V++R+++AT++NL I +FREDL+ Sbjct: 368 DEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLY 427 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+ + +PPLR+R+EDI LVH F+ ++ I P V+ + WPGN+R Sbjct: 428 YRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVR 487 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N +E LV + G++ID LP NL N +++ E Sbjct: 488 ELKNAVERLVVL-TDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMNVAV-------EA 539 Query: 552 EKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 EKQ+I + L + ++ + A LGI +TLY K+++ + Sbjct: 540 EKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 179/615 (29%), Positives = 288/615 (46%), Gaps = 76/615 (12%) Query: 9 VLMQIQPTIQRFA-RMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVL 67 +L Q+ + + + + +V V I D V + K LG +L + Sbjct: 131 LLYQLLNDLDFYISQTIEAVHNAVVAI-DAQGRIVFFNPSAEKLLGFHAEE---VLGKPI 186 Query: 68 ETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGT-----PVILQDRCVGVISLIAVTHEQ 122 + F L G + + L T P+IL + +G +++ E Sbjct: 187 KNFFP---DSLTFKALATGEELRGIPMSYGELNTKADFLPIILGHKVLGAVAVFKDITEL 243 Query: 123 QEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRV 182 +E + + + +++N +G++V+DD+ + Sbjct: 244 EE-----------------------VSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENI 280 Query: 183 QFVNQTALKTLGVVQNNIIGKPI------RFRPLTFESN---------FTHGHMQHIVSW 227 +NQ L +GV ++IGK I P T +S + Sbjct: 281 VLMNQFFLDVIGVKVQDVIGKKINDISPNSSLPQTLKSGKAQFGETWHLKGRDFIIMRVP 340 Query: 228 DDKSELIIGQL-----------HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 ++ ++G L + + L + + + ++GE Sbjct: 341 IEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGES 400 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 M++ K L R + + S+++++GESGTGKEV + AIHK S R N P+I +NCAA+PE L Sbjct: 401 PRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDL 460 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 LESELFGY +GAFTGA GK G + A+ GT+FLDEIGDM L +QAKLLR ++ RE+ Sbjct: 461 LESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELER 520 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 +G + PI+VD+RII+ATN++L + + E KFR DL+YRLNV+ I LPPLRER+EDI + Sbjct: 521 LGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIAR 580 Query: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 + +RLG+ G+ P+ + L + WPGN+REL N++E + + I L Sbjct: 581 GLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELENILERAIVICDE-AWILPKHL- 638 Query: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGI 575 + + L + AL+ E++++ + L R +K Q A LGI Sbjct: 639 -----------ALPGVMETITLGAEQTLEYALQAAEREILDKTLRRVQGNKVQAARILGI 687 Query: 576 GIATLYRKIKKYELL 590 + LY+K+ KY + Sbjct: 688 HRSVLYKKLAKYNIQ 702 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 265/524 (50%), Gaps = 49/524 (9%) Query: 94 REKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQG 153 +K + P+++ + + ++S+I N + +++ S+L+ Sbjct: 72 TKKEEIKRPIVVNELNL-ILSIIPFGENT------NTQGSMLIFSNVTNY--SQLIHKLE 122 Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------R 206 + +I T+I+ G++++D + V ++ + LG+ + + IG+ + R Sbjct: 123 EERDSKEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIENTR 182 Query: 207 FRPLTFESNFTHGHMQHI-----------VSWDDKSELIIGQL--------HNIQGRQLF 247 + + I + + + ++G++ +++ R Sbjct: 183 MPIVLETGKEEVAQLHKIKGSYMIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISV 242 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 + ++ S +E ++GE + K ++ + A + S+V+++GESGTGKE Sbjct: 243 IEKELATYKSRFREFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKE 302 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 + A AIH S R PF+ +NCAAIP LLESELFGY GAFTGA GK G + AN G Sbjct: 303 IFAHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEG 362 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIGDMPL +Q KLLR I+ RE+ +G + +++IRII+ATN+NL + + EGKFR Sbjct: 363 TIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFR 422 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRLNV+ I +PPLRER DI L+ ++ + + L GI+ + + L+ + W Sbjct: 423 EDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWK 482 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N++E +N++ + E+I LP + + Sbjct: 483 GNVRELENILERAINIMENSEIIQVKDLPKEITGKKVSMVP-------------KKLQDI 529 Query: 548 LEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 L E EK I AL +K + A L IG +LY KI+KY++ Sbjct: 530 LAESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEKYKIQ 573 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 153/502 (30%), Positives = 249/502 (49%), Gaps = 39/502 (7%) Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 ++A E + H D + +S V + +++ +D+ V Sbjct: 87 ILAFLPELRYHALVCRNNQGDILGVLSYDQVFH--DLALRVCETEARINAVVETVDEAVC 144 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDK---- 230 +VD+ + V N A + G+ +IIGKPI + Q I S + Sbjct: 145 IVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVNKEWQEIRSLHHQPVPG 204 Query: 231 ------------SELIIGQL---HNIQGRQLFLMAFHQSHTSFSVANAP------DEPHI 269 +IG + ++ +Q+ + D Sbjct: 205 THVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQRLEKEIDKFSTDRNPF 264 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + G + + +L + + A + + V++ GESGTGKE+ A+AIH+ S R +K F INC Sbjct: 265 AAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASPRIDKKFCVINC 324 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP L ESE+FGY GAFTGA GK G+ + A+ GTLFLDEI ++PL +Q KLLR + Sbjct: 325 AAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVL 384 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + IG S+PI+VD+RII+ATN++L +A G FREDL+YRLNV+ + +PPLRER+E Sbjct: 385 QDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERRE 444 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LV+ FL ++ + P V+ + WPGN+R+L N++E +V + G+ Sbjct: 445 DIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQLKNIIERMVIL-TEGDT 503 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQ 568 + + +P +L + +Q+ T + E+ E+++I L + + ++ + Sbjct: 504 VLESAIPESLKLSSRQDQATAT----------IGLASVTEQTERELIIRTLKQVNGNRSE 553 Query: 569 VADELGIGIATLYRKIKKYELL 590 A LGI +TLY K+ + ++ Sbjct: 554 AARMLGIPRSTLYYKMHQLGIM 575 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 161/551 (29%), Positives = 263/551 (47%), Gaps = 41/551 (7%) Query: 57 SGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVISL 115 S + + L K + ++ C + C P+ + VGV+++ Sbjct: 132 SKGTNAIGTALMEKQPVQI--LAWEHFCRP-NHFLTCS-----AAPIFDPEGEIVGVLNI 183 Query: 116 IAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLV 175 H + + + L + K T+++++ G++ Sbjct: 184 SGDYRYANAHTLGMVVAAVNAIEKQLC-----LHKVTSKLYISYKYSQTLLESISDGIVS 238 Query: 176 VDDENRVQFVNQTALKTLGVVQNNIIGKPI-----RFRPLTFESNFTHGHMQHIVSWDDK 230 V++ + +N + K G+ GK I + P+ G+ + +++ Sbjct: 239 VNNSGIIAEMNSSGGKIFGINHQAAKGKHINTVMRQQAPILSLLATGEGYRDREILLENQ 298 Query: 231 SELIIGQLHNIQG--------RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQL 282 + + + + A + + ++ + ++GE + + Sbjct: 299 GKKVFSSATLLLDDSGNTIGAVAVLRQARDALKSRRAQHSSLPRYSFDDIIGESPAISEA 358 Query: 283 KRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELF 342 K A S S++++ GESGTGKE+ A++IH +S RN PFIAINCAAIPE L+ESELF Sbjct: 359 KEWARIAANSGSTILLSGESGTGKELFAQSIHNVSSFRNGPFIAINCAAIPEALVESELF 418 Query: 343 GYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSP 402 GY +G FTGA G G ++A+ GTLFLDEIGDMPL +QAK+LR I+ ++I +G+S Sbjct: 419 GYAEGTFTGAKKGGSPGKFESADRGTLFLDEIGDMPLTVQAKVLRVIQEKKISRVGSSEE 478 Query: 403 IQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLH 462 QV+IRII++T++NL + G FREDLFYRLNV+ + +PPLR+R DI L+ + + Sbjct: 479 RQVEIRIIASTHKNLRTEVLNGNFREDLFYRLNVLVVQVPPLRDRGGDIPLVACHLVEKI 538 Query: 463 TRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN 522 + R+G L H WPGN+REL N +E V V+ + L +++ + Sbjct: 539 SARMGKQRIVGEDAFWGKLASHNWPGNVRELENAIEQAVVRSDDSGVLLARHLTFDVVES 598 Query: 523 GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLY 581 + A +L EMEKQ I AL + + ++ A +LGIG TLY Sbjct: 599 VAP-------------TGGRAEIVSLTEMEKQAITAALHLYDGNIQKAASKLGIGRNTLY 645 Query: 582 RKIKKYELLNT 592 RKI++Y + + Sbjct: 646 RKIREYGIAHA 656 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 155/501 (30%), Positives = 245/501 (48%), Gaps = 36/501 (7%) Query: 115 LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 + + ++ + + +R + + + + + +++++ G+ Sbjct: 71 VSSEGDNGRQAVIEMVRFLESDFIMNEASEIHGVDKLLHENALMQERLQMILESVQDGIC 130 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPI------------------RFRPLTFESN- 215 VVD V +VN + L+ + ++G+ + R + + + Sbjct: 131 VVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKKDG 190 Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQS------HTSFSVANAPDEPHI 269 T + + D + ++ + +I Q + Q + Sbjct: 191 TTIVANVNPIFVDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAF 250 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 +G+ + + L S+ A S ++V++ GESGTGKEV+A IH SGRR PFI +NC Sbjct: 251 ANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNC 310 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AIP LLESELFG+ KGAFTGA K G + AN GT+FLDEIG++ LQ KLLR + Sbjct: 311 GAIPGALLESELFGHEKGAFTGAVRR-KLGKFELANHGTIFLDEIGELDKNLQVKLLRVL 369 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +E +G I VD+RII+ATN++L + EG FR+DL+YRLNVIPI LPPLR+R + Sbjct: 370 QQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPD 429 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 DI LLV +F+ ++ GI PD +++ +RWPGN+REL N++E V + ++ Sbjct: 430 DIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIER-VITLMDTDL 488 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV 569 I + +LP + + SL D EE EKQ+I AL + S Sbjct: 489 ITAAMLPSYIKGDI---------AGREVQSLADDTVLPWEEYEKQIIANALRQGTSFNGA 539 Query: 570 ADELGIGIATLYRKIKKYELL 590 A L I T+ K +KY L+ Sbjct: 540 AKLLRISHKTVAAKARKYGLV 560 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 159/528 (30%), Positives = 256/528 (48%), Gaps = 27/528 (5%) Query: 79 RFDPLCEGCDSKENCREKAFLGTPVILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYV 137 R L + P+ + +GV+++ + +H + Sbjct: 171 RPIQLVGPEHYNAQLQYWTCSAAPIFDENGELLGVVNVAGHYLKVHQHTLGMTVALGKAI 230 Query: 138 RHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ 197 F + + + K +++D++ +G++ +D + R+ +N+TA + LG+ Sbjct: 231 E-----FSLRQSRLRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKP 285 Query: 198 NNIIGKPIRFRP-------LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG------R 244 +++ +P F S + + + + +K IG + + Sbjct: 286 QDVLNQPADAVLGQHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVL 345 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 +F H ++A + E L G Q+ L + A PS+V+++GESGT Sbjct: 346 AVFKGLSHARGFVKNMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGT 405 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A+AIH S N PF+ INCAAIP +L+ESELFGY GAFTGA G+ G Q A Sbjct: 406 GKEMFAQAIHNASSSSNGPFVGINCAAIPAELIESELFGYEGGAFTGAKREGQPGKFQLA 465 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 GTLFLDE+ M + +QAKLLR ++ R IG I ++ RII+A+N++L + + +G Sbjct: 466 AHGTLFLDEVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVRQG 525 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL YRLNV+ I +PPLRER++D+ L+ +F H+++L I+ +++ + Sbjct: 526 NFREDLLYRLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKL-KFEFTISEPARKLMMAY 584 Query: 485 RWPGNLRELSNLMEYLVNV--VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 WPGN+REL N++E + S I+ L + E V DD Sbjct: 585 HWPGNVRELENVIERCAVMALSRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFDD 644 Query: 543 AGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 LE +EK+ + EAL + + A LG+ TLYRKIKKY + Sbjct: 645 ----NLESLEKRAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 153/515 (29%), Positives = 249/515 (48%), Gaps = 44/515 (8%) Query: 118 VTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVD 177 V E + + + + +L E D + F + D + + Sbjct: 471 VQEEMRRLGEELAAQKIARLEQQKEEVTHELEETSKALDASEERFRDLFDEAPIAYVHEE 530 Query: 178 DENRVQFVNQTALKTLGVVQNNI-------------------------IGKPIRFRPLTF 212 ++ N+ A++ LG+ ++ IG+ + Sbjct: 531 LDSHFIRANRAAIRILGIKPEDVPHTYGKTFAPDTPDAQRRMREAFESIGRGTDTSGVVL 590 Query: 213 ESNFTHGHMQHIVSW----DDKSELIIGQLHNIQGRQLFLMAFHQSHTS--FSVANAPDE 266 E + W D + +I R L + + + Sbjct: 591 EMRRKDNGKPFWIQWWSRPDPSGKYTRTMFLDITDRVLMEQDKARLEAQNTYLQEEIRSQ 650 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 + ++VG + Q+ R + R+A + S+V++ GE+GTGKE++ARAIH S RR +P + Sbjct: 651 HNFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVK 710 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NC AI L+ESELFG+VKGAFTGA AN + G + A+ GT+FLDE+G++P Q KLL Sbjct: 711 VNCGAISTGLVESELFGHVKGAFTGAIAN-REGRFELADGGTIFLDEVGELPPETQVKLL 769 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ +E PIG++ ++VD+R+I+ATN++L + EGKFR DLFYRLNV+P+T+PPLR+ Sbjct: 770 RVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQ 829 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R DI LL +FL R+LG IA + + L ++ WPGN+REL N++E V + Sbjct: 830 RANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPWPGNIRELQNVIERAVVLST- 888 Query: 507 GEVIDST--LLPPNL-----LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 G ++ LP T E++ + L G ALE++E+Q I Sbjct: 889 GSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASV 948 Query: 560 LSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 L + N + + A L + +TL +++K ++ Sbjct: 949 LQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGIV 983 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 278/565 (49%), Gaps = 46/565 (8%) Query: 40 CRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFL 99 + G +G G + ++ L+ + G C Sbjct: 42 NFIPGACWREDKVGTNGIGTAMVIGQALDVT--------GAEHFSRGL-HSWTCT----- 87 Query: 100 GTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 G+P+ + + +GVI L +E+ S + + + SK ++ + Sbjct: 88 GSPIFSPEGKPIGVIDLSG--PWYRENKLALATIVSSAIAIENNLKQSKAFKETLTYRQL 145 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-------PIRFRPLT 211 S+ F ++N +LV+D+ R+ VN + K LG + ++IG+ + Sbjct: 146 SEYF---LENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFL 202 Query: 212 FESNFTHGHMQHIVSWDDKSELIIGQLHNIQG-----RQLFLMAFHQSHTSFSVANAPDE 266 ++ + + +V + I G + + F +++ P Sbjct: 203 IKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENVAALIALKMHEGSQFYISSPPAL 262 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 E ++G +R+ RL A S + V+++GE+GTGK++ ARAIH+ SGR+ PF+A Sbjct: 263 KGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRK-GPFVA 321 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 IN A+P +L+ SELFGYV GAFTGA GK G + A GTLFLDEIGDMP+ +Q LL Sbjct: 322 INGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLL 381 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R +E ++++ IG I +D+RII+ATN +L + + E KFREDL++RL V+ I L PLRE Sbjct: 382 RVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLRE 441 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+ DI LL +F+H +++LG I P + +L + WPGN+REL N+ E+ VN+ Sbjct: 442 RKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELRNVAEWAVNI-AE 500 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 I + LP L + T ++ + S T+L E+EKQ I + L + Sbjct: 501 VNTISVSHLPSYLSGSQTIRENSNSFSS-----------TSLIELEKQEISQLLEHYGGN 549 Query: 567 -KQVADELGIGIATLYRKIKKYELL 590 +VA LGI TLYRK+ KY L Sbjct: 550 ITKVAKALGIARNTLYRKLYKYGLK 574 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 150/443 (33%), Positives = 246/443 (55%), Gaps = 30/443 (6%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------------FRPLTF 212 ++D++++GV+ + + +V ++N+ A + LG+ Q + G + T Sbjct: 43 ILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEKTI 102 Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQ----LHNIQGRQLFLMAFHQSHTSF--SVANAPDE 266 ES + + + ++ + ++ L + G + + T Sbjct: 103 ESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKELKGR 162 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 +++G+ MR+L L+ +A S S+V++ GESGTGKE++A AIH+ S R++ PFI Sbjct: 163 YAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIK 222 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAA+ E +LESELFG+V+GAFTGA ++ K G + A+ GTLFLDEIG++ +Q KLL Sbjct: 223 VNCAALSEGVLESELFGHVRGAFTGAVSS-KPGRFELASGGTLFLDEIGEISASMQVKLL 281 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ E +G + ++VD+R+I+ATN++L I G FR DL+YRL V+P+ LPPLRE Sbjct: 282 RVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRE 341 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R+EDI LL+ FL + G G++ + IL H +PGN+REL N++E+ V ++ + Sbjct: 342 RREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAV-LLST 400 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NS 565 G I LP +L + + + AL ME MIR+A+ + + Sbjct: 401 GRTIGVRELPRDL---------APIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGN 451 Query: 566 KKQVADELGIGIATLYRKIKKYE 588 Q A LGIG +TL+RK+++ Sbjct: 452 MSQAAKLLGIGRSTLWRKLREMG 474 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 230/471 (48%), Gaps = 45/471 (9%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP------- 204 + + +ID+ G+ + D + V +N + G+ ++G+ Sbjct: 17 YANFNELITELEAIIDSSYDGIFITDGKANVLRLNAAYERITGIKAAEVVGRNMVDLVRE 76 Query: 205 -----------------IRFRPLTFESNF-THGHMQHIVSWDDKSELIIGQLHNIQGRQL 246 + + +N + ++ + ++ Sbjct: 77 GLYDQSVTLLVLEQRARVTIDQIVKRNNKHILVTGNPVFDKRGGIFRVVTNVRDVTDLNR 136 Query: 247 FLMAFHQSHTSFSVANAPDEP------HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 ++ ++ R + + L +++A S+V++ G Sbjct: 137 LQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITG 196 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE+ A+ IH+ N+PFI INC AIPE LLESELFGY GAFTGA GK GL Sbjct: 197 ESGTGKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFGYDGGAFTGAKREGKPGL 256 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A+ GTLFLDEIG+MP +LQ KLLR I+ + ++ +G V++RII+ATN++LA Sbjct: 257 FELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHM 316 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + +G FREDL+YRL V+P+ +PPLRER+EDI LLV +FL ++ G I PDV++ Sbjct: 317 VQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFGFN-KVILPDVIDR 375 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L ++ WPGN+R+L N++E LV V G I + +LP + ++ Sbjct: 376 LTEYSWPGNVRQLENIIERLV-VTTPGNEITADMLPQQVNARIPLPKT------------ 422 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 A+ EK ++ E ++ + +VAD LGI T RK KY L++ Sbjct: 423 GTKLKEAVAATEKYLLTETFRQYGNWNKVADVLGIDRTTACRKAVKYGLIS 473 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 255/503 (50%), Gaps = 28/503 (5%) Query: 113 ISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSK--LLEDQGPGDNISKIFATMIDNMD 170 ++ + V ++ + + + + +F + + + ++ + D Sbjct: 117 LNAMEVIQHVPFYVINEKNGVLEGIIGQNELFAFQKYMKQQLEEARHVIEWLRLSFDTAY 176 Query: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-----------PIRFRPLTFESNFTHG 219 +G+ +VD+ +Q N T + +GV + IG+ P+ + E N H Sbjct: 177 EGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAENVIENTRLPVVLKTGVPERNQVHR 236 Query: 220 HMQHIVSWDD----KSELIIGQLHNI--QGRQLFLMAFHQSHTS------FSVANAPDEP 267 + K +IG + + +G + + Sbjct: 237 LQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILERFDQKDGAVKPLFSKPKKKQI 296 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 H E ++GE + + + K++ + A S +SV++ GESG GKE ARAIH N PFI++ Sbjct: 297 HFEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARAIHGAGVTNNGPFISV 356 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP+ LLESELFGY +GAFTGA NGK G + AN GTLFLDEIGDM L+ Q K+LR Sbjct: 357 NCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHGTLFLDEIGDMSLLTQVKILR 416 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ REI IG + PI VD R+I+ATN++L Q + EG FREDL++RL+VIPI +PPLR R Sbjct: 417 VLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFREDLYHRLHVIPIQIPPLRFR 476 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 ++DI L+V L + + + +V+ ++ + WPGN+REL N++E L + Sbjct: 477 KQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFHYNWPGNVRELINVLERLFAL-SDD 535 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 I + LP EQ + + ++ + +A +E E+ +I L +K Sbjct: 536 VHIRAKDLPEEFYYRDM-EQKKLVPMIQSLPAKQEAMKVVRDEEERGLIERVLKEAKGNK 594 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A LGI ATLY K+ ++++ Sbjct: 595 SKAAALLGISRATLYNKLSRFKI 617 >UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=A5GDL0_GEOUR Length = 591 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 153/600 (25%), Positives = 265/600 (44%), Gaps = 62/600 (10%) Query: 20 FARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSR 79 F + L + + + V V+ + + + + G L VL KVV + R Sbjct: 25 FYQALVNAMGVGVLAVNTSGMTILANKSARENFGAY---PGIHLNDVLPELWPKVVQRLR 81 Query: 80 FDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRH 139 + +P++L VG + + + +E Sbjct: 82 KHTHSIEVSVRGGEANYLVRVSPILLDKEQVGAVCVFVESTGLEEMAM------------ 129 Query: 140 ISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN 199 ++ +I++ G+ + D + V +N + + + + Sbjct: 130 -----------QMQTFQELTSELGAIINSSSDGLWICDSQANVLRINPASERINHIKAED 178 Query: 200 IIGKPIRFR-----------------------PLTFESNFTHGHMQHIVSWDDKSELIIG 236 ++G +R E + + ++ Sbjct: 179 VVGHNMRDLVAEGVFDKSATLEVLRTGNVANMLQQREGRKLILTGTPVFDTAGRLIRVVV 238 Query: 237 QLHNIQGRQLFLMAFHQSHTSFSV------ANAPDEPHIEQLVGECRVMRQLKRLISRIA 290 +I + + E +++ VM + +++ Sbjct: 239 SERDITEIDILQRELEEQEAMKDQFRHHMIEKQQVELESHRVIARSPVMLKALHQAIKVS 298 Query: 291 PSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT 350 SSV+++GESG GK ++A IHK S R KP I INC AIPE L+ESELFGY KGAFT Sbjct: 299 TVDSSVLILGESGVGKGLIADLIHKNSLRAKKPLIKINCGAIPESLIESELFGYEKGAFT 358 Query: 351 GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRII 410 GA A GK G + A+ GTLFLDEI ++PL Q KLLR +E I +G ++ VD+RI+ Sbjct: 359 GAQAGGKPGYFELADGGTLFLDEIAELPLSSQVKLLRFLEDGRITRLGGTNGRTVDVRIL 418 Query: 411 SATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVY 470 +AT++NL + +++GKFR DL+YRL VIPI +P +RER++ I L+H+++ + G Sbjct: 419 AATHRNLEEMVSQGKFRLDLYYRLKVIPIYVPSVRERKDCILPLIHHYIDFFGTKTGIK- 477 Query: 471 PGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDV 530 + +IL + +PGN+REL N+ E LV + E+ID LP +++ Sbjct: 478 KRLTRAASDILMSYPYPGNVRELMNICERLVVM-SEMELIDLKDLPGDIVARVEETGKAS 536 Query: 531 TEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 E + + A++ +E+ ++ +A+ R+ ++ ++A+ LG+ +T+ RK+KKY L Sbjct: 537 MAWPE-----EMSLQQAIDSVERNVLAQAVERYGNQCRMAEVLGVNQSTIARKLKKYGLT 591 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 152/517 (29%), Positives = 250/517 (48%), Gaps = 30/517 (5%) Query: 90 KENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLL 149 + + ++ + V +I V + ++ +S ++ +L Sbjct: 121 YDGVHDAQEKLLRILGSGKSV-IIGASLVNELTERMGGHSIFIYSRSSIRLALETAVELA 179 Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP 209 + + + M+ + +G+L VD + +N A K LGV ++IGK I Sbjct: 180 DQRRSEIEKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVA 239 Query: 210 LTFESNFTHGHMQHIVSWDDK---------------SELIIGQLHNIQGRQLFLMAFHQS 254 + + + +++ K +IG + IQ Q A Sbjct: 240 PEIKLDDVFKRGKPLLNVAQKTKQGMLLVNRIPVVHQGELIGAVATIQDAQAVQKAEKAI 299 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 + E ++G+ +L A + +++++ GE+GTGKE+ A++IH Sbjct: 300 RHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIH 359 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S R PF+A+NCAA+PE +LESELFGY +GAFTGA GK GL + A+ GT+FLDEI Sbjct: 360 NASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEI 419 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 G+M L LQ++LLR ++ +E++ +G+ I +D+RII+ATN++L + +G FR+DL+YRL Sbjct: 420 GEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRL 479 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSV-YPGIAPDVVEILRKHRWPGNLREL 493 NV+ I LPPLRER +D+ L +FL + +L + ++ +L H WPGN+REL Sbjct: 480 NVLSIELPPLRERLDDLPDLFRFFLKNY--KLDKQLIEKVLSIMLPVLCHHNWPGNIREL 537 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 N+ E + ++ + +D E S + +E E+ Sbjct: 538 ENIAERVSVLLKAHVTMD----------EVLAEVKKELFGSHIEILDSTDLTKEVENWER 587 Query: 554 QMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 Q I + L SK + A LGI TL+RKIK Y + Sbjct: 588 QRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGI 624 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 156/540 (28%), Positives = 273/540 (50%), Gaps = 35/540 (6%) Query: 62 LLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHE 121 L+ +++T + + P+ LQ + VG++ ++ T Sbjct: 38 LIDSIVKTGFPIFLAEKERVE---DSHHHG------EWILPIRLQLKVVGLLWVM-FTSG 87 Query: 122 QQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 ++ ++ + + ++S K + + + ++ D+ +L++D + Sbjct: 88 KKIPFNEIEQVVAMIETYLS--MEEKQRQYTVENRKLRQELKGFLEFEDKPLLLLDRQGI 145 Query: 182 VQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH--------IVSWDDKSEL 233 V + LG+ ++ ++G+ I + + +K + Sbjct: 146 VTECSAGVQTVLGLNRSRLLGETIERLTSEKVKIDVTNVFKPSFQTVEMKLEGKREKWHV 205 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSP 293 I + F++ F + T+ + + ++G + + + RIA Sbjct: 206 QIKPTYVQGEVVSFMIKFLKKETNQFKQSKDLLYSFQDIIGSSEAIHFAREMARRIAGQD 265 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 ++++ GESGTGKE+ A+A+H+ S R PF+AINCAAIP+ LLESELFGY GAFTGA Sbjct: 266 ITILLRGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESELFGYESGAFTGAQ 325 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 GK G + A+ GT+FLDEIGDM L LQAKLLR ++ R++ +G + + VD+RII+AT Sbjct: 326 RQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAAT 385 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 ++NL + + + FREDL+YRLNVIPIT+PP+RER+ED+ +L+ YF+ + + Sbjct: 386 HRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRLSNKEKKQPKYF 445 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 + D +++ ++ WPGN+RE+ N++E+ V + +G++I + LP L S + Sbjct: 446 SKDAYDLIFRYPWPGNVREIVNMVEH-VIYLETGDLITADSLPAYLKIKEGKSTSQLQIN 504 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHN----SKKQVADELGIGIATLYRKIKKYEL 589 H EE KQ + L + KK++A E+GI + TLYR++KK ++ Sbjct: 505 VAPHG----------EESFKQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLYRRLKKLKI 554 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 158/583 (27%), Positives = 278/583 (47%), Gaps = 53/583 (9%) Query: 35 VDENLCRVAGTGAYGKFLGRQLSGN-SRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENC 93 +D N + K +G++ R ++ V+ + + ++R + ++ Sbjct: 133 IDINEEIILFNHMAEKMVGKKREEVIGRPIKEVIPSTKMPRILKTRVPEYNQKQLLGDHL 192 Query: 94 REKAFLGTPVILQD-RCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQ 152 + P+I + R +G + + + I+ +L E+ Sbjct: 193 Q-IVTTRLPIIDEGGRLLGALCV---------------------FKDITDAV--ELAEEV 228 Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------- 205 + + +I + D+ + VVD+ +N+ K G+ + +IGKP Sbjct: 229 TNLKQVRTMLEAIIQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEG 288 Query: 206 -RFRPLTFESNFTHGHMQHIVSWDDKSELI--------------IGQLHNIQGRQLFLMA 250 E+ ++ V ++K ++ +G +H++ ++ Sbjct: 289 ESMHLKVLETRRPVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAE 348 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 +++ + + ++G+ M A +P+++++ GESGTGKE+ A Sbjct: 349 LNRARQII--RTLEAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFA 406 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 AIH S R+ FI +NCAA+ E LLESELFGY GAF+GA GK GL + AN G++F Sbjct: 407 HAIHNESDRKYNKFIRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIF 466 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG++ +QAKLLR ++ +EI+ +G + I V++R+I+ATN N+ + +A+G FREDL Sbjct: 467 LDEIGELTQNMQAKLLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDL 526 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YR+N PI++PPLR+R EDIE L + R G G++ + L + WPGN+ Sbjct: 527 YYRINRYPISIPPLRQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNV 586 Query: 491 RELSNLMEYLVNVV-PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 REL N++ + + P E I+ LP L + T + + A+E Sbjct: 587 RELENVLGRAMIFLNPHMEWIEKDHLPVFELEQKENDTDQGTGF-DFPDIEGEKLSVAVE 645 Query: 550 EMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 + E +I++ L +H+ ++ + A LG+ I LY K+ KY L N Sbjct: 646 KFEAHLIQQTLEKHHFNRTKTAKALGVSIRNLYYKMDKYGLAN 688 Score = 64.4 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 40/228 (17%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQ---GPGDNISKIFATMIDN 168 VI E + + ++ I + E Q + + + ++ Sbjct: 66 VIHTTGDQAVFDELLQRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYDRIFNS 125 Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ------ 222 G++ +D + N A K +G + +IG+PI+ + + Sbjct: 126 THDGMIFIDINEEIILFNHMAEKMVGKKREEVIGRPIKEVIPSTKMPRILKTRVPEYNQK 185 Query: 223 --------------HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH 268 I+ + + +I ++ A + Sbjct: 186 QLLGDHLQIVTTRLPIIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEAIIQSS 245 Query: 269 IEQL-------VG-----ECRVMRQL--KRLISRIAPSPSSVMVVGES 302 E + +G M L K +I + A + S GES Sbjct: 246 DEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDIS---EGES 290 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 161/500 (32%), Positives = 268/500 (53%), Gaps = 27/500 (5%) Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 P++ + + V V+ L E++ D ++ + ++ +V++ LE + + Sbjct: 64 FPIVREMKVVSVLLLRPKQGEKERFARDI--QYLKLLSELACQWVAEKLERETWQKKFGE 121 Query: 161 IF---ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------RFRPLT 211 I +I ++ + +VD + R+Q +N+ + ++G+ I Sbjct: 122 IHLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKITQYITKEKWESI 181 Query: 212 FESNFTHGHMQHIVSWDDKSELI-IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIE 270 + + ++ I + N QG +++ T H E Sbjct: 182 KSGKEKDETVVQVPRIKGEAYFATIQLVKNKQGIVSYMILLKSKKTEKPEQAGRRLYHFE 241 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++G +++Q + R++ S ++M+ GESGTGKE+ A+AIH S R+N+PF+A+NCA Sbjct: 242 DILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKNQPFVALNCA 301 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGY KGAFTGA K G + AN GTLFLDEIGDM L LQAK+LR ++ Sbjct: 302 AIPENLLESELFGYEKGAFTGAEKE-KPGRFELANHGTLFLDEIGDMSLYLQAKILRVLQ 360 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 + + IG++ ++D+RII+AT++NL + I +G+FREDL+YR++VIPI +PPLR R+ED Sbjct: 361 EKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIPPLRARKED 420 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 + +L+ +F+ ++ L +A + ++ L ++ WPGN+REL N++ + V + G+ + Sbjct: 421 LPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVEL-QIGDTV 479 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS----K 566 LP +L + V H +EK+ + E L R+ K Sbjct: 480 TLESLPSSLQRGAKSFPPSVKPKRTNHYQTR---------LEKRKVLELLERNGWSTEGK 530 Query: 567 KQVADELGIGIATLYRKIKK 586 K+ A +LGI +ATLYR +KK Sbjct: 531 KKTAADLGISLATLYRYLKK 550 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 147/500 (29%), Positives = 248/500 (49%), Gaps = 20/500 (4%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + + + +++ ++ + E + + ++ + S+ F Sbjct: 139 IKNSGVDIVIGGVMSTQIAERLGLKTVFIETGREAIYHALREAKRVARVRRQEQERSEQF 198 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI---IGKPIRFRPLTFESNFTHG 219 T++D +G++ VD + VN A+K G+ + + K + L+ Sbjct: 199 RTILDYSTEGIITVDAAGAINLVNAAAMKITGLSGEAVGLAVDKLLPQLGLSRVLASGRA 258 Query: 220 HMQHIVSWDDKSELI-----------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH 268 + + + + + + +G + Q + Sbjct: 259 ELGEVETVNGQQVAVNRVPIIIRGQAVGAVATFQPVADIQALEGKIRQKIYKRGLVARLT 318 Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 + ++G+ +RQ + + S+V++ GE+GTGKE+ A++IH S RR PF+A+N Sbjct: 319 FDDILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNASSRRKGPFVAVN 378 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAA+PE LLESELFGY +GAFTGA+ GK GL + A+ GT+FLDEI ++ LQ +LLR Sbjct: 379 CAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGTIFLDEISEISPKLQGRLLRV 438 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ REI+ +G I VD+RII+ATN++L Q + G FR+DL+YR++V+ + LPPLRERQ Sbjct: 439 LQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPPLRERQ 498 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 EDI L+ +FL L+ R I PD +LR++ WPGN+REL N+ E L + SG Sbjct: 499 EDIIPLMQHFLKLYCLRSNRPVKEIGPDAQAMLRRYHWPGNVRELRNIAERLAVL-ASGP 557 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK- 567 VI + + L ++ A ++ + ++ +AL + Sbjct: 558 VIGARDIAAVLTGETGRRKAINETAEPAAALAGANDV----DLNRAILLKALEEADYHYG 613 Query: 568 QVADELGIGIATLYRKIKKY 587 + A LGI TL+R++K+Y Sbjct: 614 RAAARLGISRTTLWRRLKQY 633 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 141/344 (40%), Positives = 204/344 (59%), Gaps = 7/344 (2%) Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + + E VG+ ++++ LI ++A + S+V++ GESGTGK Sbjct: 123 IKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGK 182 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E++ARAIH S RR+ P + INC AIPE+LLESELFG+ KGAFTGA + G + AN Sbjct: 183 ELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKT-RIGRFEVANG 241 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIGDM LQ KLLR I+ + IG++ + VDIRI++ATN++L + + + +F Sbjct: 242 GTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEF 301 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDL+YRLNVIPI +PPLR+R+ DI LL+ +F++ I+ + L H W Sbjct: 302 REDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHW 361 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E V ++ SG+ ID LP +L + E ++ + D Sbjct: 362 PGNVRELENVVER-VLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDH---- 416 Query: 547 ALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 A+EE EK +I +AL N K Q A L I TL K+K+ + Sbjct: 417 AVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 262/466 (56%), Gaps = 38/466 (8%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFR 208 +++ T++D +GV+VVD V+ +N+ + LG+ + + IGK + R Sbjct: 110 HRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLH 169 Query: 209 PLTFESNFTHGHMQHIVSWDD--------KSELIIGQLHNIQ-----------------G 243 G++Q I + +IG + + Sbjct: 170 ICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELS 229 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 R+ +++ S A A +E+++G + +K++I R A PS+V++ GESG Sbjct: 230 REASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESG 289 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKEVVARAIH+ + PF+++NCAAIPE LLE+ELFGY GAFTGA GK G Q Sbjct: 290 TGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQL 349 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEIGDMPL +QAK+LR +E +++ +G S +VD+RII+ATN+ L + + + Sbjct: 350 AHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRD 409 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYRLN+I I LPPLRER+ DI L+ + + R+ G V A + +E+L Sbjct: 410 GTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLIN 469 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E+L+++V GE I+ LP L +T VT + + ++ D Sbjct: 470 YSWPGNIRELVNVVEWLISMV-EGENIEREHLPAYL----STIHPSVTPMPDGGANIADQ 524 Query: 544 GGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYE 588 + + E++ I AL + + +K + A LGI +TLY K+KKY Sbjct: 525 WKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 161/467 (34%), Positives = 241/467 (51%), Gaps = 40/467 (8%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL- 210 ++ +++ M +G+LVV ++ +Q VN G + ++G+P Sbjct: 1 MLKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCD 60 Query: 211 ---------------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ---------- 245 FE H++ D ++ + Q Sbjct: 61 ACKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIV 120 Query: 246 --LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + M +E + +VG R M+ L L+ + A S V + GESG Sbjct: 121 TDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESG 180 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+VA+AIH LS R +P+I +NCAA+ E LLESELFG+VKGAFTGA + G +A Sbjct: 181 TGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGAL-QHRKGRFEA 239 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ G +FLDEIGD+P+ +Q KLLR +E + +G + I VD+R I+ATN+NL IA Sbjct: 240 AHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIAR 299 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYR+NVIPI LPPLRER+ED+ LV +F+ +R+ G++P+ + I + Sbjct: 300 GGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQ 359 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL + +EY V+ G+ I S LP L + G Q+ + A Sbjct: 360 YSWPGNVRELKSALEYS-YVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPA------- 411 Query: 544 GGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 L++ +KQ + EAL + +K Q A LGI T+ +++KY + Sbjct: 412 --ENLQQRQKQELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGI 456 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 246/471 (52%), Gaps = 41/471 (8%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL 210 +Q + ++D+M +GV +D + R+ N++ G + +G+ RF Sbjct: 3 EQTHAVWNVRFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGF 62 Query: 211 TF-------------------------------ESNFTHGHMQHIVSWDDKSELIIGQLH 239 + E Q V DD E +IG + Sbjct: 63 SHCLGTLCPADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNGE-LIGIVE 121 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + A H++ + + + ++G+ VM+++ + A S S+V++ Sbjct: 122 TVTDMTELQKARHKAEEATRLLGQH--YSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQ 179 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESGTGKE++ARAIH S + ++PF+ +NC+A+ E LLESELFG+VKGAFTGA + + G Sbjct: 180 GESGTGKELIARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRD-RAG 238 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 + A+ G++FLDEIG++ +Q KLLR ++ RE+ +G S +DIR+I AT+++L + Sbjct: 239 RFEEAHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNE 298 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 +A+G FR+DL+YRL V PITLPPLR+R+ED+ LLV++F+ G G+AP+ + Sbjct: 299 LLAQGVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMR 358 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ++ ++ WPGN+REL N +E+ + SGE I LP ++ T + EA + Sbjct: 359 LVFEYHWPGNVRELENAIEHAFVL-TSGEQIQVNDLPAEII----TPRPSPERAREAGVP 413 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 E+ +++ + L + K A +LG+ +++ +KK+ + Sbjct: 414 RTAGSRQHHEQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 276/566 (48%), Gaps = 49/566 (8%) Query: 38 NLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKA 97 +L + G K +G V+++K V+ D K C Sbjct: 111 SLKMIPGAFMDEKNIGTNAMSM------VIDSKGPIQVS--GRDHF-IEAYHKWTCS--- 158 Query: 98 FLGTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGD 156 P+ + +GV++L H + S+ + + ++ E + Sbjct: 159 --AAPIKDSHGKLIGVLNLTGYIECVHSHTLGMVIAASNAIEEM-----LRVKEYNKIQN 211 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ---------NNIIGKPIRF 207 +K + +++ ++ D +++ N AL G N ++ Sbjct: 212 INNKHIKNLFNSIPVAIITSDMNGKIKVCNNKALDMFGSNSINKLKAYEMNELVENWDEI 271 Query: 208 RPLTFESN-FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANA-PD 265 R + F+ + + + L++ ++N + + ++ + N Sbjct: 272 RNAIYLGESFSREVNIRTLRNNFRCNLMVSSIYNCEEDDIEVVYVFEEVKKIKRKNHGQA 331 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 ++++G+ ++ +I+ S S+++++GESGTGKEV A++IH S R + PFI Sbjct: 332 YYTFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFI 391 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 A+NC AIP+QL+ESELFGY +GAFTGA G G + A+ GT+ LDEIG+MPL +Q KL Sbjct: 392 ALNCGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKL 451 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ I IG+S I VD+RII+ATN++L + + G+FR+DL+YRLNV+P+ LPPLR Sbjct: 452 LRVVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLR 511 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER+ DI L++ Y + ++RL P I+ + ++ + + WPGN+REL N++E Sbjct: 512 ERKGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELENVVE------- 564 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-N 564 +I++ +P NG + +SE L L+ EK+ + + L + Sbjct: 565 --LIINTESIPSGYFQNGNCYNEVLINISEDSLK--------LDFAEKEHLVKVLKKFKG 614 Query: 565 SKKQVADELGIGIATLYRKIKKYELL 590 + + A+ LGI TLY KIKKY + Sbjct: 615 NITRSAEALGIRRNTLYSKIKKYNIE 640 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 164/492 (33%), Positives = 237/492 (48%), Gaps = 38/492 (7%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGD--NISKIFATMIDNMDQGVLVVDDENRVQ 183 I D+ V ++ I LE + + + ++ G+ + D E Sbjct: 452 IFDDQGNIMLVVTNVRDITELNELEREFKKMVGLRERELDAVFESSYDGLYITDGEANTL 511 Query: 184 FVNQTALKTLGVVQNNIIGKP------------------------IRFRPLTFESNFTHG 219 +N+ + LGV IG+ + Sbjct: 512 RLNEAFERILGVKAEECIGRNMRELVAEGVYSRSGTLLALEKQDQVTITLQAKTGKTALV 571 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF--HQSHTSFSVANAPDEPHIEQLVGECR 277 I L++ + +I + + F + + Q V Sbjct: 572 TSTPIRDEHGNIILVVTNVRDISELNELQEKLGHAEELSRFFQSELQEMKLRTQCVIHSS 631 Query: 278 VMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLL 337 MR+L ++ RIA S+V++ GESG GKE+VA IH S RR +P I INC AIPE LL Sbjct: 632 KMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSNSNRREQPMIKINCGAIPENLL 691 Query: 338 ESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPI 397 ESELFGY GAFTGAS GK G+ + A+ G LFLDEIGD+PL LQ KLLR ++ +EIL + Sbjct: 692 ESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGDLPLSLQVKLLRVLQDKEILRV 751 Query: 398 GASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHY 457 G + PI+VD+RII+ TN NL + + + FR+DLFYRLNVIPIT+PPLRER+EDI +L ++ Sbjct: 752 GGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNVIPITVPPLRERREDIPILANH 811 Query: 458 FLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPP 517 FL ++ G ++ ++ ++ WPGN+REL NL+E LV V + I + L Sbjct: 812 FLDNFNQKHGMN-KKLSGSILAYFMEYDWPGNVRELENLVERLV-VTSLNQTITAHDL-- 867 Query: 518 NLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGI 577 + E + ALE E++++ A S S +VA LGI Sbjct: 868 ------SAWSELKPENKSDNEHGIVRLQDALENTERRILENAFSVCKSTYEVARALGISQ 921 Query: 578 ATLYRKIKKYEL 589 T+ RK KY + Sbjct: 922 PTVVRKAAKYGI 933 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 15/169 (8%), Positives = 42/169 (24%), Gaps = 26/169 (15%) Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + ++ IS + + E+ +++ + ++ G+ + D E +NQ Sbjct: 211 GRIAGAVAVLQDISEL--EHIAEELARTRELNRQLDAIFESSFDGLYLTDGEGNTLRLNQ 268 Query: 188 TALKTLGVVQNNIIGKPIRFR------------------------PLTFESNFTHGHMQH 223 ++ G+ +G +R + Sbjct: 269 GFVRITGISMEECVGSNMRELVDTGVFSDSGTLLALEKQERTTITLVARTGKEVLVTSTP 328 Query: 224 IVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 I II + +I + + + + Sbjct: 329 IFDEQGNIAFIITNVRDITELNELERRLKHIGLRDRELDTILDSSFDGI 377 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 25/161 (15%) Query: 126 ISDNLREFSDYVRHISTIFVSKLLED-QGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 I D + + ++ I LE + T++D+ G+ + D E Sbjct: 329 IFDEQGNIAFIITNVRDITELNELERRLKHIGLRDRELDTILDSSFDGIFITDGEANTLR 388 Query: 185 VNQTALKTLGVVQNNIIGKPIRFR------------------------PLTFESNFTHGH 220 +NQ + GV +G+ ++ +T Sbjct: 389 LNQAFERITGVTAQECVGRNMKELVDEGYFSGSGTLLVLEKRERATITLVTRTGKEVLVT 448 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA 261 I L++ + +I F + Sbjct: 449 STPIFDDQGNIMLVVTNVRDITELNELEREFKKMVGLRERE 489 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 18/135 (13%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESN 215 + + +++ V+ +D E R+ +N+ K+ G+ + GK + + N Sbjct: 120 HKNASEWEACFNSIYNPVISIDGEGRINLLNRALEKSTGISASEARGKKVTDIFTNSKLN 179 Query: 216 FTHGHMQHIVS------------------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 Q + + + + L +I + ++ Sbjct: 180 EVLTTGQTQATRKIQYQDKILLTNRTPLYKNGRIAGAVAVLQDISELEHIAEELARTREL 239 Query: 258 FSVANAPDEPHIEQL 272 +A E + L Sbjct: 240 NRQLDAIFESSFDGL 254 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 176/612 (28%), Positives = 291/612 (47%), Gaps = 53/612 (8%) Query: 14 QPTIQRFARMLASVLQLEVEIVDENL-------CRVAGTGAYGKFLGRQLSGNSRLLRHV 66 QP I + LAS +E+ D + ++ T +G Sbjct: 84 QPLISNYLG-LASTNGHSLELFDPSGAFLLGIHINISSTPVLSIVFNESTTGT------- 135 Query: 67 LETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQ-DRCVGVISLIAVTHEQ--- 122 T + L + + + P++ + +G ++L+ E+ Sbjct: 136 --TAHGLATYHKKPFQLIGPENYLDVWQNMICSAAPILDEMGEVLGTLALVQDMGEKPWE 193 Query: 123 ------QEHISDNLREFSDYVRHISTIFVSK--LLEDQGPGDNISKIFATMIDNMDQGVL 174 H + ++ + + I S L + ++ +++ +D+GV+ Sbjct: 194 KNRSNLHIHSLGWVSSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVI 253 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL--------TFESNFTHGHMQHIVS 226 ++ R+ N + L V I G+ I L + +++V+ Sbjct: 254 TIEPNGRILSSNHEGSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVN 313 Query: 227 WDDKSELIIGQLHNI-QGRQLFLMAFHQSHTSFS-------VANAPDEPHIEQLVGECRV 278 ++ + ++ QG A + + S + A + E +VG+ Sbjct: 314 GREEKQYLVSLRPVYKQGNDELDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEA 373 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M + K L R A + +V+++GESGTGKE+ A+AIH S R PFIA+NCAA+P L+E Sbjct: 374 MLKAKALARRFARTRENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPRNLIE 432 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY G+FTGA NG+ G I+ AN GTLFLDEIGDMP+ LQA LLR ++ + ++ IG Sbjct: 433 SELFGYESGSFTGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIG 492 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 + QVD R+I+ATNQ+L E KFREDL++R++V+ I +PPLR R DI +L +F Sbjct: 493 GRNYRQVDFRLITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHF 552 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + +R+G I+P+ + ++ WPGN+R+L N M Y VN+ G+ I + LP Sbjct: 553 IENYAKRVGLPAAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQ-IMLSHLPKE 611 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA-DELGIGI 577 L T + + L +++++EK I++AL R + +A D LGI Sbjct: 612 LSEKRTALPMVSEKECDKPEELF-----SMKDLEKVTIKKALERAGNSVAIASDLLGISK 666 Query: 578 ATLYRKIKKYEL 589 TLYRK+K++ + Sbjct: 667 TTLYRKLKEHNI 678 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 250/490 (51%), Gaps = 26/490 (5%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQ 171 V I++ + + L + + E + +++F ++++ Sbjct: 146 VGDAISIKQATRLGLKGVLITSGKEAIVQAIHDAENIAEVRISERERAELFRIIVNSSHD 205 Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP-------LTFESNFTHGHMQHI 224 G++ +DD R+ N A K G+ +G IR + + + G +Q++ Sbjct: 206 GIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTNLPRILRQGGSEDGELQYV 265 Query: 225 VSW--------DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 + ++G + N + + ++GE Sbjct: 266 GEKVIVTQRFAIKVNGRVVGAVANFRDVTELQRLERLVRQKLHAKGLVARIRLADIIGES 325 Query: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 ++ L + A ++V++VGE+GTGKE++A+ IH S R N PF+A+NCAA+PE L Sbjct: 326 AALKGLIERARKFAAVDATVLIVGETGTGKEMLAQGIHNASHRANGPFVAVNCAALPENL 385 Query: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 LESELFGY +GAFTGA GK GL + A+ GT+FLDEI +MPL LQ++LLR ++ RE+L Sbjct: 386 LESELFGYAEGAFTGAKKGGKPGLFELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLR 445 Query: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 IG I VD+RII+A+N+NL + +G FR+DL+YRL+++ +T PPLRER+EDI LLV Sbjct: 446 IGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVR 505 Query: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 FL H+ L + I V++L ++ WPGN+REL N ++ L+ + ++I + Sbjct: 506 AFLRKHSH-LNPLVSDIDSLAVQLLAEYEWPGNVRELENAIQRLIILSEE-QIIGKAAVS 563 Query: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVADELGI 575 L + +A +L ++E Q I L +N+K + A LGI Sbjct: 564 ALLEELQGGQTLPFRGKQQAAP--------SLADLEAQYIAAVLAEENNNKSRAAKRLGI 615 Query: 576 GIATLYRKIK 585 +TL+RK++ Sbjct: 616 DRSTLWRKLR 625 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 173/546 (31%), Positives = 259/546 (47%), Gaps = 42/546 (7%) Query: 53 GRQLSGN---SRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPV-ILQDR 108 G S + + VL K V ++ E + NC P+ Sbjct: 112 GANWSEAVRGTNAIGTVLVEKVPLQV--LGWEHYVEQ-NHVLNCW-----AAPICNADGD 163 Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS--KLLEDQGPGDNISKIFATMI 166 VGV+ + I + ++ V + + L E Q + Sbjct: 164 VVGVLDVSGEAG-----IERGMERLAEVVLMGAKLIEQSLHLTELQRDFHFARQGIEKAG 218 Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVS 226 + M G + +D + +N+ K LG + ++G F++ + + + Sbjct: 219 EMMRDGFIAIDSRGIITEINREGAKLLGRKREELVG---HLAADVFDNRRWSFNGKSLYM 275 Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLI 286 +S+ + +L + Q M + S A + VG + + + Sbjct: 276 QSSESDNLTSRLVKVTDEQGAPMG---AIGVLSPAPREERSQETMWVGRSQATQSVFSRA 332 Query: 287 SRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVK 346 + A + S+V++ GESGTGKE+VAR +H+ S R NKPF+AINCAAIP L+ESELFGY Sbjct: 333 DKAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAIPATLIESELFGYAD 392 Query: 347 GAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVD 406 GAFTGA G G + A GT+FLDEIGDMP +QA LLR ++ RE++ IG S P VD Sbjct: 393 GAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQEREVVRIGDSRPRPVD 452 Query: 407 IRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRL 466 +R+++ATN++L+ I +G FR DL+YRL V+ I +PPL R +DI LV YF+ R Sbjct: 453 VRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVKKICRAS 512 Query: 467 GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE 526 G G+ +V E L + WPGN+REL N ME +V + + + LP + N Sbjct: 513 GREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAM-AEHSYLTTDDLPAEIAKN---- 567 Query: 527 QSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIK 585 +S G T LE+ K+ I +AL+ N K A LGIG TLYRKI+ Sbjct: 568 -----------VSAVSCGETLLEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLYRKIE 616 Query: 586 KYELLN 591 + + + Sbjct: 617 ELGIKS 622 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 160/524 (30%), Positives = 254/524 (48%), Gaps = 54/524 (10%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 V L+D V+ +AV + L + + +L + + F Sbjct: 127 VPLRDASGAVLGHLAVFDARPMPPEPRLLYTFQIFAARAAAELDRL-RMDRMLRDSEERF 185 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG-KPIRFRPLTFESNFTHGHM 221 + + + D E+R N+TAL+ LG+ +G + P T ++ Sbjct: 186 RDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRLVKEA 245 Query: 222 QHIVSWDDKSELIIGQLH----------------------------NIQGRQLFLMAFHQ 253 + + ++ +L ++ R L + Sbjct: 246 FASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPDRGGQFTRTVFIDVTERVLMEREQAR 305 Query: 254 SHTS--FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + +++VG+ + + + +S++A + S+V++ GE+GTGKE+VAR Sbjct: 306 LQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVAR 365 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 A+H S R+ KP I +NCAA+P L+ESELFG+ KGAFTGA A K G + A+ GTLFL Sbjct: 366 AVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVAR-KPGRFELADGGTLFL 424 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE+G++ L QAKLLR ++ RE +G ++P++VD+R+I+ATN++LAQ + EG FR DL Sbjct: 425 DEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLL 484 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV P+ LP LRER DI LLV +F+ RLG ++ D ++ L + WPGN+R Sbjct: 485 YRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPGNIR 544 Query: 492 ELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 EL N++E + E VID +LP V+ + AGG +L Sbjct: 545 ELENVIERAAILSDGPELVIDPDVLP----------------VTRGGAAPAGAGGQSLVA 588 Query: 551 MEKQMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 +E IR L++ + A LG+ TL ++KK +L Sbjct: 589 VEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGIL 632 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 152/561 (27%), Positives = 257/561 (45%), Gaps = 45/561 (8%) Query: 72 EKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQD-RCVGVISLIAVTHE--------- 121 + + L ++ PV ++ + +SLI ++ Sbjct: 159 ALALRHKKPVQLFGPEHYLWELQDIVASSAPVFNENNEVIAALSLIQHLNDSPWAEGYQV 218 Query: 122 QQEHISDNLREFSDYVR----------------HISTIFVSKLLEDQGPGDNISKIFATM 165 H + + + + S+L + T Sbjct: 219 LCTHTLALITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQILTTHDLLRTT 278 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN--------IIGKPIRFRPLTFESNFT 217 + + ++ +D + + +N+TA K L + ++ + K E Sbjct: 279 LSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAEGKDL 338 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQ-------LFLMAFHQSHTSFSVANAPDEPHIE 270 + + I+ + + F A + + A H + Sbjct: 339 TDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKRAGTNASFHFD 398 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 L+GE + L + + + ++++++GESGTGKE++A++IH R PFIA+NCA Sbjct: 399 DLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YRPEGPFIALNCA 457 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIP L+ESELFGY G+FTGA G+ G I+ A+ GTLFLDEIGDMPL +QA LLR +E Sbjct: 458 AIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDIQAVLLRVLE 517 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 R++L IG VD R+I+ATN++L + + E FRED+++RL+V+ I +PPLR R D Sbjct: 518 DRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTIHIPPLRTRSGD 577 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 IE L YFL + R G ++ + + +L + WPGN+R+L N + Y +N+ +I Sbjct: 578 IEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIYGINL-SDNSLI 636 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG-TALEEMEKQMIREALSRHNS-KKQ 568 ++ LP ++L E+ E + + G + L+EME I AL + N+ + Sbjct: 637 EARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNAIIMALEKTNNSVTK 696 Query: 569 VADELGIGIATLYRKIKKYEL 589 A L I +TLYR++++ + Sbjct: 697 AAKILNISKSTLYRRLRELNM 717 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 156/502 (31%), Positives = 236/502 (47%), Gaps = 35/502 (6%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA 163 + V V +I Q+ H L + + ++ + + +F Sbjct: 138 FREGADVVVGGVITGKSAQKHHQPYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFR 197 Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNF 216 T++D G++ V+ + R+ N A + + IGK I + Sbjct: 198 TVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVLTTGRD 257 Query: 217 THGHMQHIVSWDDKSELI--------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH 268 G + + + +G + Q + Sbjct: 258 ELGQLLKVSGTRVLCNKVPIVVNGKPVGAVATFQDAGNIQQMEARIRREIYARGHVATFT 317 Query: 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAIN 328 E +VG+ +R + A + SSV+++GE+GTGKEV A++IH S R N PF+AIN Sbjct: 318 FEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANGPFVAIN 377 Query: 329 CAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388 CAA+P Q+LESELFGYV GAFTGAS GK GL + A+ GT+FLDEI +M + Q KLLR Sbjct: 378 CAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQGKLLRV 437 Query: 389 IEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQ 448 ++ ++++ +G+ I VD+R+I+ATNQNL++ + E KFR DL+YRLNV+ + LPPLRER Sbjct: 438 LQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLPPLRERG 497 Query: 449 EDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508 DI +FL H+ P +E L +H WPGN+REL N +E +V V Sbjct: 498 ADIIRYAEFFLEKHSAAQNRRL-AFTPAALERLARHPWPGNVRELQNTIERIVAVCRQ-- 554 Query: 509 VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKK- 567 + D A + EK+ IR+AL+ K+ Sbjct: 555 ----------------PQVDAGLVAQMLEDDADSGIEVAAADSEKEQIRQALAIAKGKQG 598 Query: 568 QVADELGIGIATLYRKIKKYEL 589 + A LG+ +TL+RK+KK L Sbjct: 599 EAARLLGVSRSTLWRKMKKLGL 620 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 160/561 (28%), Positives = 252/561 (44%), Gaps = 64/561 (11%) Query: 58 GNSRLLRHVLET-----KTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGV 112 ++ + ++T +V+ + + +N P+I C G Sbjct: 131 ELAKAIGKPIQTLLPSSGLPRVIETQQPEY--NQLHEFDNGTVIVTTRVPLIFGGACSGA 188 Query: 113 ISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQG 172 I++ E ++L E +I + +I++ + Sbjct: 189 IAVFKDVTE-----------------------ATQLAEQVTDLRSIQTMLEAIINSSNDA 225 Query: 173 VLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFES------------------ 214 + VVD+ VN K G+ + IIG+P ES Sbjct: 226 ISVVDENGTGLMVNPAYTKLTGLDSDQIIGQPATADISEGESIHMQVLRTKKPVRGARLK 285 Query: 215 ----NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIE 270 V D + + IG +H++ + A Sbjct: 286 LGPHKKDVIVNVAPVVVDGELKGSIGVIHDVSELNRLSSQLQHAQKRL--ATLEATYSFS 343 Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++VG + M R A + ++++GE+GTGKE+ A AIH S R+ +PF+ +NCA Sbjct: 344 EIVGTSKEMAFAIEQAKRGAKTSFPILLLGETGTGKELFAHAIHNESERKGQPFVRVNCA 403 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 A+ E LLESELFGY +GAF+GA +GK GL + A G++FLDEIG+M QAKLLR ++ Sbjct: 404 ALTETLLESELFGYEQGAFSGALKSGKKGLFEEAEHGSIFLDEIGEMSPNTQAKLLRVLQ 463 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 +EI+ +G + PI + +R+I+ATN +L I E +FREDL+YRLN +PI +PPLRER D Sbjct: 464 EQEIVRVGGTKPIPIHVRVIAATNVDLEGAIRERRFREDLYYRLNKLPIRIPPLRERLSD 523 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV- 509 + L+ + L G I+ V+ + WPGN+REL N++ + + G Sbjct: 524 LPALIDHLLRKLNLDYGHNIQSISKLVLSRFEGYYWPGNVRELENVLARSMIYMDLGATE 583 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQ 568 + LP +G E+SD T + L E EK+ +R L+ + K + Sbjct: 584 LTDVSLPQEFGQSGKREESDATAPKQ--------LQAFLAEKEKEHLRRTLAEVDGVKTE 635 Query: 569 VADELGIGIATLYRKIKKYEL 589 A LGI I +LY K++KY L Sbjct: 636 AAKLLGISIRSLYYKLEKYNL 656 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP 209 E + I + G++VV+ +VQF+N+ A GV IGKPI+ Sbjct: 85 EKVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPIQTLL 144 Query: 210 LTF---ESNFTHGHMQHIVSWDDKSELIIGQ 237 + T + + D +I+ Sbjct: 145 PSSGLPRVIETQQPEYNQLHEFDNGTVIVTT 175 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 159/547 (29%), Positives = 256/547 (46%), Gaps = 29/547 (5%) Query: 57 SGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQ-DRCVGVISL 115 +G + + L V+ + C+ C P+ + GV+ + Sbjct: 122 AGGTNGIGTALAIGRPVQVS--GCEHYCQKL-HSWTCS-----AAPLYDECGDISGVLQM 173 Query: 116 IAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLV 175 + H + ++ +R +++ + + + M G LV Sbjct: 174 SGPCEKTHPHTLGMVVASAEAIRKQLSVWQRN-----NELVLANAQLSHLFQTMSDGALV 228 Query: 176 VDDENRVQFVNQTALKTLGVV-QNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELI 234 +D + RV VN A K G + + I + TH V ++E + Sbjct: 229 IDADGRVIQVNPVARKVFGKELSGEKLNRIITAADSPDLISSTHSCKDLDVVLHTETEPV 288 Query: 235 IGQL---------HNIQGRQLFLMAFHQSHTSFSV-ANAPDEPHIEQLVGECRVMRQLKR 284 L + G +F + + A H ++GE ++ Sbjct: 289 EALLTVKPLKDDNSDQSGAVVFFNPIRKMKKLVNRFGGAQATFHFSDIIGEHDSVKAAIN 348 Query: 285 LISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGY 344 + + A + S V+++GESGTGKE++A+AIH S RRN PF+A+NCAA+P L+ SELFGY Sbjct: 349 MARKAADNLSHVLILGESGTGKELLAQAIHNHSMRRNGPFLAVNCAALPRDLIASELFGY 408 Query: 345 VKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQ 404 GAFTGAS G+ G + A+ GTL LDEIGDMPL QA LLR ++ + + +G+ I Sbjct: 409 TSGAFTGASPKGRPGKFEMASGGTLLLDEIGDMPLDQQATLLRVLQDKHVTRLGSERAIP 468 Query: 405 VDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR 464 VD+R+I ATN+NL +++G FR+DL+YRLNV I +PPLRER D+ELL + L + Sbjct: 469 VDVRVICATNKNLLDAVSKGHFRQDLYYRLNVTRIDVPPLRERGRDVELLFRFLLKKISL 528 Query: 465 RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT 524 RL P + VV L + WPGN+REL N++E +++ V E + LP + Sbjct: 529 RLHQARPHVDEAVVTALLHYGWPGNVRELENVVERMIHTVEE-ETLHCAHLPREICCETP 587 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRK 583 ++ S + E E++++ + L R+ + +A E+ + T+YRK Sbjct: 588 VGRA--LPDSVVTTQDAATLKQVVGEQERRLLVDLLQRYQGNISLIAREMAVSRNTIYRK 645 Query: 584 IKKYELL 590 + Y + Sbjct: 646 MHHYNIS 652 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 151/534 (28%), Positives = 250/534 (46%), Gaps = 36/534 (6%) Query: 69 TKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVISLIAVTHEQQEHIS 127 + + R + + + P+ R +G ++L T +H Sbjct: 137 NGMGLCLVERRPVHVMGAEHFSSSLHYLSCSAAPIHDSTGRFLGALNLAISTENFHQHTL 196 Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 + + +E+ + +++ +D GV V+ + + +N Sbjct: 197 GLVEA------------AAHAIEEHLRLRALIASQRVILELLDDGVAVLGADGTIVSLNG 244 Query: 188 TALKTLGVVQNNIIGKPIR--------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLH 239 A LG+ +++G+ IR R + + H + + Sbjct: 245 QACSMLGLSP-DVVGRDIRSFVRESEVLRAILADRQTFHDREVTFRLVQGELSCALSCAP 303 Query: 240 NIQGRQLFLMAFHQSHTSF--SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 G + + + + VA A E ++G+ + +R+ RL A ++ + Sbjct: 304 FADGGVILTLRETRRMRKYAARVAGAKAVYTFEHILGQSKALREAVRLARVAAQGDATTL 363 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 ++GESGTGKE+ A+A+H RR PF+ +NC A+P L++SELFGYV GAF+GA G Sbjct: 364 LLGESGTGKELFAQAVHNAGARRKGPFVVVNCGALPRNLVQSELFGYVAGAFSGALKEGS 423 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A+ GTLFLDEIG+MPL Q LLR ++ E+ +G +VD+RII+ATN++L Sbjct: 424 PGKFELADGGTLFLDEIGEMPLEAQVSLLRLLQENEVTRLGGKEARRVDVRIIAATNKDL 483 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 A + FR DL+YRLNV+ I +PPLR+R+ D+ LL FL T LG I+ + Sbjct: 484 ALAVRNNAFRGDLYYRLNVLSIAIPPLRQREGDVPLLTRLFLDKFTASLGKPELEISREA 543 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 + L H WPGN+REL N +E LVNV S ID LP +++ + + + Sbjct: 544 LAALAAHHWPGNVRELENCIERLVNVACSSR-IDIADLPQDVMTDMLRGRPAAPGEA--- 599 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYELL 590 G +L+ +++ +I E L ++ ++ L I TLY K+K+Y + Sbjct: 600 -------GMSLKRIQRALILETLRETGGNFRRASNLLNISRTTLYAKLKQYGIS 646 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 150/385 (38%), Positives = 213/385 (55%), Gaps = 6/385 (1%) Query: 208 RPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 P+ + ++ E I+ ++ + A + +V P Sbjct: 75 VPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPLVTVGKGEIAP 134 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 L+G M+++ + I RIA S +V++ GESGTGKE+VA AIH S R+ KPF+ I Sbjct: 135 RPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKI 194 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 +C AIPE LLESELFG+ KGAFTGA K G + A+ GT+FLDEIGD+ LQAKLLR Sbjct: 195 DCTAIPENLLESELFGHEKGAFTGAHTR-KLGKFELADGGTVFLDEIGDISPALQAKLLR 253 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ + +G + +VD+RII+ATN++L + + G FREDL+YRLNV+ I LPPLRER Sbjct: 254 FLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRER 313 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI LLV YF+ L R+ G G+ V +IL ++ WPGN+REL N+ E V ++ G Sbjct: 314 KEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAV-LMARG 372 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 VI LP LL + + + EME+ I AL + +K Sbjct: 373 NVITPESLPEYLLRAVRGRTEAWHPAEDRGV---LPLKEMVAEMERSAILRALEEYRGNK 429 Query: 567 KQVADELGIGIATLYRKIKKYELLN 591 VA LG+ TLY K+K+ + + Sbjct: 430 TAVARALGMSRTTLYAKMKELGIAD 454 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 162/607 (26%), Positives = 271/607 (44%), Gaps = 93/607 (15%) Query: 14 QPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSG--NSRLLRHVLETKT 71 Q I+ F A ++ + E + +GR++ + L +L+T Sbjct: 28 QGIIKLFNEAAAKIMGVAKE----------------ETIGRRVEEVIPNTSLLEILKTGK 71 Query: 72 EKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLR 131 ++ L NC E P+ + VG I + Sbjct: 72 A---ENNQKMHL-------GNC-EIISNRGPICKDGKIVGAIGV---------------- 104 Query: 132 EFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK 191 + IS L + I+ +I+++ G++V + + N L+ Sbjct: 105 -----FQDISDFEALSL--ELDNVKEINNDLDAIIESVADGIVVGSADGMILRANSAYLQ 157 Query: 192 TLGVVQNNIIGKPIRFRPL-----------------------TFESNFTHGHMQHIVSWD 228 G+ + +GK +R + + + Sbjct: 158 ITGIQEKEFVGKNVRELINQGYMNKSVTEMVFRTKSRVNVVDIRSGKELLMTGAPVFNEE 217 Query: 229 DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV-----ANAPDEPHIEQLVGECRVMRQLK 283 + ++ + +I Q+ + + + + ++++ + M++ Sbjct: 218 KEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAFKKIITKNNDMQKKL 277 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 +A S+V+++GESG GKE++A+ IH+ S R KPFI INC AIP LLESE FG Sbjct: 278 DTAYHVARVDSTVLILGESGVGKELIAQLIHRASHRSEKPFIKINCGAIPANLLESEFFG 337 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y G+FTGA GK GL + A+ GTLFLDE+G++PL Q K+LRAI+ +EIL +G I Sbjct: 338 YEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLRAIQEKEILRVGGKKTI 397 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 ++DIRII+ATN++L I E FREDL+YRLNV+P+T+PPLR+R+ED+ + L + Sbjct: 398 KLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQRKEDVIPIALELLARYN 457 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 G I P+V++ L + WPGN+REL N +E LV V + I + + Sbjct: 458 TAYGYQ-KWIHPEVMDCLLNYDWPGNIRELENTIERLV-VTSMDDCITKDAMAEIKYIDV 515 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRK 583 + +T + LE+ E +++ EA S ++ A LGI +++ +K Sbjct: 516 HPAPNGLT-----------SLKAFLEKEENRLLEEAYRLMGSTRKAAAVLGISQSSMVKK 564 Query: 584 IKKYELL 590 +KKY + Sbjct: 565 MKKYGIE 571 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%) Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTFESNF 216 + D++ GV+ +D + ++ N+ A K +GV + IG+ + + Sbjct: 13 EIFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTSLLEILKTGKA 72 Query: 217 THGHMQHI-----------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 + H+ + D K IG +I + + + +A Sbjct: 73 ENNQKMHLGNCEIISNRGPICKDGKIVGAIGVFQDISDFEALSLELDNVKEINNDLDAII 132 Query: 266 EPHIEQLVGECR 277 E + +V Sbjct: 133 ESVADGIVVGSA 144 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 161/532 (30%), Positives = 260/532 (48%), Gaps = 53/532 (9%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYV---------------RHISTIFVS 146 P++ +++ + ++ D + R I + Sbjct: 48 PILENGNTAERLAITSFLTVKENEDIDLESYNGEVFLVTDDYNEIKGVVTNREIIFFLLD 107 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 L + D + + D + D ++ +A K G+ ++IGK + Sbjct: 108 NLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVS 167 Query: 207 FRPL------------------------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 T D+ + I+ +I Sbjct: 168 ELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDIT 227 Query: 243 GRQLFLMAFHQSHTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + Q+ +++ + M +L L++++AP+ S++ Sbjct: 228 DEEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTI 287 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GE+G GKEV+A+ IH +S R PFI INC AIPE LLE+ELFGY KGAFTGA + G Sbjct: 288 LIYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEG 346 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K GLI+ A+ GTL LDEI ++PL LQ KLLR ++ +E + +G PI+VD+RII+A+N++ Sbjct: 347 KPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKD 406 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + EGKFR+DL+YRLNV+P+T+PPLRER +DI +L ++FL+++ + G + + Sbjct: 407 LKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHS-KQLTNE 465 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 V+EI K+ WPGN+REL N++E +V + + I LP LLN T S Sbjct: 466 VMEIFMKYPWPGNVRELENVIERIVII-SENDQITKKDLPGELLNQEETNHSFGV----- 519 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 H+S A +E Q+I++A+ S + A+ LG+ +T+ RK+KKYE Sbjct: 520 HVSRLMPLKEASALVEYQLIKQAIEECGSSYKAAEVLGVDQSTIIRKLKKYE 571 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 149/505 (29%), Positives = 247/505 (48%), Gaps = 30/505 (5%) Query: 114 SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGP-GDNISKIFATMIDNMDQG 172 L V + H ++ + I V + + ++ +++N+++G Sbjct: 90 DLTGVRDNMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLNNLNEG 149 Query: 173 VLVVDDENRVQFVNQTALKTLGVVQNNI----IGKPIRFRP--------LTFESNFTHGH 220 V ++ + V + N L I + + + + +N + Sbjct: 150 VFILSSDGEVLYQNNALAGILATQSAQSTQPEIPRELLQKIQSGSGGDFVYHLNNKVYSV 209 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN------APDEPHIEQLVG 274 ++ E + + N+ ++++ + + + + Sbjct: 210 NVAPFPCNESEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVSKISQEHYTFGNIFS 269 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 M + L ++AP+ ++V++ GESGTGKE++A AIH+ S R++ P I INC AIPE Sbjct: 270 VSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINCGAIPE 329 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 L ESE FGY GAFTGA GK G + A+ GTLFLDEIGD+PL +QAKLLRA++ Sbjct: 330 NLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSF 389 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 +G P+ VD+RII+ATNQNL + + +FREDL+YR+NV + LPPLRE+ EDI L Sbjct: 390 YRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTEDIMPL 449 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTL 514 F+ ++ G I V++ L ++ WPGN+REL N++E LV G+ I Sbjct: 450 TKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGK-ISIKA 508 Query: 515 LPPNLLNNGTTEQSDVTEV---------SEAHLSLDDAGGTALEEMEKQMIREALSRHN- 564 LP L D ++ + + S + ++E+E++ I ++L +H+ Sbjct: 509 LPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLKKHSF 568 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 +K +VA EL I +TLY ++K + Sbjct: 569 NKAKVARELNIPRSTLYYRMKVLNI 593 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 162/466 (34%), Positives = 243/466 (52%), Gaps = 30/466 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL- 210 P + + ++D + +G++ +D + +N +A K L + NI G+ IR Sbjct: 73 LLPQEEKEQKLRGILDTIGEGIIALDKSGIITMINPSAEKILNLS-ENIEGRDIRDILSA 131 Query: 211 ------TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ-------GRQLFLMAFHQSHTS 257 T + + + + V+ + I+ G + ++ Sbjct: 132 ELPILKTLSAGEDYDNKEIFVTLPGGKSHYLTSGRPIKNDDGNTVGAVAAIKDINEVRKL 191 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 P + ++ E +M + +IA S+V++ GESGTGKE+ ARAIH S Sbjct: 192 VHRITHPTMLSFDDIIAESSIMNETISFAKKIAHGDSTVLLTGESGTGKELFARAIHMES 251 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++ PF+ +NCAAIPE L+ESELFGY +GAFTGA GK GL + AN GT+FLDEIG++ Sbjct: 252 PRKDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGGKHGLFELANKGTVFLDEIGNL 311 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 LQ KLLR ++ RE+ IG I VDIR+I+ATN NL + + EG FREDL+YRLNVI Sbjct: 312 NPQLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHNLEKLVNEGYFREDLYYRLNVI 371 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 PI LPPLR R+EDI L ++ L G Y ++P E+L+ + WPGN+REL N++ Sbjct: 372 PIKLPPLRNRKEDIIPLANHILGQMRTNHGGQYQ-LSPKSRELLKTYSWPGNVRELENII 430 Query: 498 EYLVNVVPSGEVIDSTLL-------------PPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 E VN+ + +I+ L Q+ +E + D Sbjct: 431 ERAVNL-ANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQQYQNGQSEAEISVNYKDKDF 489 Query: 545 GTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 L+ +EKQ++++ LS H S ++ A +LG+ T+ KIKKY L Sbjct: 490 SQILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKIKKYGLQ 535 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 160/513 (31%), Positives = 260/513 (50%), Gaps = 46/513 (8%) Query: 108 RCVGVISLIAVTHEQQE--HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM 165 +I + Q++ + + + + + + E+ + + Sbjct: 68 EIDVIIEATGSSEVQRKIHKLKHQGTAVMEALAGNLLMSILQAKEELLEVKKLKSELWAI 127 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI--------------RFRPLT 211 ++++ + + V D+ +++ N + G+ + +GK I + +P+ Sbjct: 128 LNSVQEAIEVADNSGLIKYTNPAFTRVTGIPEAQRVGKNIFEASPHGALAQALVKQKPVV 187 Query: 212 FESNFTHGHMQHIVS------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP- 264 + G ++S + + E + I + +S T A Sbjct: 188 GYRSKVGGSGVEVISNAAPILVEGEVEGAVVVFQPITDILKLMDELQKSTTIIENLYAKI 247 Query: 265 -----DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 + + L G +V + + A S S V++ GESGTGKE+ A AIH+ S R Sbjct: 248 DQITGSKYTFDDLTGSSKVFAATIDMAKKAAKSDSPVLLTGESGTGKELYAHAIHQASQR 307 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 R KPFI I CA++PE+LLESELFG+ KGAFTGA K G ++ AN GTLFLDEIG+M Sbjct: 308 RGKPFIKIGCASVPEELLESELFGHEKGAFTGAVKT-KLGKVELANGGTLFLDEIGEMNP 366 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ KL+R ++ +E +G S I+ D+R+I+ATN +L + +G+FRE+L++ LNVI + Sbjct: 367 YLQGKLMRLLQDQEFERVGGSETIRSDVRVITATNIDLKSLVRKGRFREELYFLLNVIEL 426 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 LPPLR+R+EDI +LV +F+ R+LG G+APD +++L + WPGN+REL N++E Sbjct: 427 NLPPLRQRREDIPVLVEHFIGKLNRKLGKKVRGVAPDALQLLSGYDWPGNIRELENVIER 486 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 + V EVI P + E + TE+ L++ME+ M++ A Sbjct: 487 AM-VSVETEVIGRQHFSPYIGQFTNAETTQCTEI------------VPLDKMEQMMLKAA 533 Query: 560 LSRHN----SKKQVADELGIGIATLYRKIKKYE 588 L+R+ KK+ A L I +ATLY K+KKY+ Sbjct: 534 LARYGESLEGKKKAAQALNISLATLYNKLKKYK 566 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 255/492 (51%), Gaps = 33/492 (6%) Query: 125 HISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQF 184 DN+ + ++ + + + + ++++ G++V+D + + Sbjct: 225 MTMDNINGAIIIFQDLTDLEC--IASELESVTKLYNTLQSVMEIAYDGIIVIDKKGVITM 282 Query: 185 VNQTALKTLGVVQNNIIGKPI-------RFRPLTFESNFTHGHMQHI-----------VS 226 NQ+ L + N++GKP+ R R + +Q I + Sbjct: 283 ANQSIADFLHKSRENMVGKPVEDIIENSRLRKVIKTGVAELHQLQFINGNPHVVSRMPIV 342 Query: 227 WDDKSELIIGQ--------LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 D K+ +G + N+ + + L + + + ++ +Q++ Sbjct: 343 RDGKALGAVGMILFSNFKDVRNLAQKFIRLDQKVAYYKNQIRNDMSNKITFDQIITSHEA 402 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 +++K A S SS+++ GESGTGKE++A++IH+ R+K + +NCAAIP LLE Sbjct: 403 FKKIKERAEIAAQSSSSILITGESGTGKELMAQSIHEAGVSRDKRLVKVNCAAIPADLLE 462 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SE FGY GAFTGA GK G + A+ GTLFLDEIGDM LQ+KLLR ++ + PIG Sbjct: 463 SEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIG 522 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++ V R+I+ATNQ+L Q + E +FR DL+YRLNVI +PPLRER +DI LLVH+F Sbjct: 523 SNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRERPQDIILLVHFF 582 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 + + LGS I+ D + +L +H WPGN+REL N++E + N V G ++D LPPN Sbjct: 583 IEKYNHILGSAIQDISDDAMTVLLEHTWPGNVRELENVVERVANFV-KGNLVDIDDLPPN 641 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGI 577 L S ++ + LS + ++ +K I+ AL +K + A LGI Sbjct: 642 LKEKEKKSPSF---MAGSPLSTKQRLHKSRDDHDKLAIQSALREADGNKAKAAKILGISR 698 Query: 578 ATLYRKIKKYEL 589 + LY K+ +++L Sbjct: 699 SWLYTKMARFDL 710 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 54/187 (28%), Gaps = 24/187 (12%) Query: 106 QDRCVGVISLIAVTHEQQEHI-SDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFAT 164 +D G ++ I + I ++ E S I E ++ Sbjct: 91 EDMPYGEVTEIVKNSKVGTAIVLNDKNEVKGIFTKASWIMAMFENETL-----LNHQMQI 145 Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHI 224 ++++M GV+ +D ++ +NQ A + G+ GKP+ E + Sbjct: 146 ILNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPVSLFLKGLELDEVLLKGVVS 205 Query: 225 VSWD------------------DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 + D I ++ + ++ + E Sbjct: 206 IGIKSTYGEHTLLCNITPIMTMDNINGAIIIFQDLTDLECIASELESVTKLYNTLQSVME 265 Query: 267 PHIEQLV 273 + ++ Sbjct: 266 IAYDGII 272 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 167/603 (27%), Positives = 278/603 (46%), Gaps = 71/603 (11%) Query: 15 PTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKV 74 I +A + + EV IVDE+ + G + K +L + LE ++ Sbjct: 26 EAISSAFNKMAKLYKDEVLIVDEDDNII---GIFTKNDLYKLENQGKKFNDNLENYIKRD 82 Query: 75 VTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFS 134 V + + + K P++ + +G++ L + +E Sbjct: 83 VITISEEKSIISARN-IMVKNKIE-RLPIVHNRKIIGIVHLDDLNNEL------------ 128 Query: 135 DYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG 194 + + + +++NM + V + +++ V + N+++ G Sbjct: 129 -----------------YTNVEELYALQDRILENMHEAVCITNNKGVVIYWNKSSEDLYG 171 Query: 195 VVQNNIIGKPI--------------------RFRPLTFESNFTHGHMQHIVSWDDKSELI 234 V + IIGK + I + +K + Sbjct: 172 VKRQEIIGKYLGSFFPNALILKVLKNPRKITNVNNEPSPGKTVILSAVPIFNSKNKLIAV 231 Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFS------VANAPDEPHIEQLVGECRVMRQLKRLISR 288 +I Q ++G+ + + + + + Sbjct: 232 ASTDRDITEVISLSKELMQEKKKVEFFESAYKKEIASNYSFSSIIGKSQKIIENIAIAKK 291 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 +AP+ +SV++ GESGTGKEV A+AIHK SGR F+AINC+AIPE L ESELFGYV G Sbjct: 292 VAPTSASVLITGESGTGKEVFAKAIHKASGR-TGNFVAINCSAIPENLFESELFGYVGGT 350 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTG+ GK G + AN GTLFLDEIGDMPL +QAKLLR ++ + IG+ +V+ R Sbjct: 351 FTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQDGVVYRIGSQKGTKVNCR 410 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 I++ATN++L I E FREDLFYR V+ I LPPLRER++DI+ + F++ + + G Sbjct: 411 ILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDIKDFIDLFINQISEKEGI 470 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 I +V +IL ++W GN+R+L N++E +V + +GEV + +P +++ + Sbjct: 471 KINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEV-TISSVPNHIVQD------ 523 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKY 587 E E ++ EK++I+E + +KK+ A+ L I +TLY K+ +Y Sbjct: 524 --VEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILNIKRSTLYYKLNQY 581 Query: 588 ELL 590 +L+ Sbjct: 582 DLI 584 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 143/446 (32%), Positives = 244/446 (54%), Gaps = 30/446 (6%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ 222 ++D++++GV+ + + ++ ++N+ A + L +++ R + E + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 223 HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS------------------FSVANAP 264 + + + + I + + R++ + S Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEELK 157 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 +++G M++L L+ IA S S+V++ GESGTGKE+VA A+H+ S RR PF Sbjct: 158 GRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPF 217 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+ E +LESELFG+VKGAFTGA + G + A+ GTLFLDEIG++ +Q K Sbjct: 218 VKLNCAALSEGVLESELFGHVKGAFTGAV-QSRPGRFELASGGTLFLDEIGEISPSMQVK 276 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ E +G + ++VD+R+I+ATN++L Q + EG FR+DL+YRL VIP+TLPPL Sbjct: 277 LLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPL 336 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RERQ D+ LL+ F+ + LG G+ + +++L + +PGN+REL N++E+ + Sbjct: 337 RERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLC 396 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 ID LP +LL + + L L + +EK++IR A++ Sbjct: 397 NDSR-IDLRHLPGDLL---------PAQSQSSFLELAMMEENPVRYVEKELIRLAMAESG 446 Query: 565 SK-KQVADELGIGIATLYRKIKKYEL 589 +VA +L +G +TL+R++K+ +L Sbjct: 447 GNVSEVARKLSMGRSTLWRRLKEMKL 472 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 162/549 (29%), Positives = 276/549 (50%), Gaps = 31/549 (5%) Query: 64 RHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCV---GVISLIAVTH 120 R +L T + + + + + I +R + ++S++ Sbjct: 5 REILRT--PVSIHSQIAAHIVQKVSHISR-QNNVSIFLRKINDNRLIPANSMLSMVTFFA 61 Query: 121 EQQEHISDNLREFS--DYVRHISTIFVSKLLEDQGPG------DNISKIFATMIDNMDQG 172 + E I + + + ++ F ++L +++ N S + + +++ G Sbjct: 62 SRGEEIEVVVEGANVDNAIKEFKGFFYNELGKEKEEKTTYELLKNTSIAYEKIFNSIGSG 121 Query: 173 VLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNFTHGHMQHIVSWDDK 230 ++V D+ + N+ A G+ + IGK I+ + G + Sbjct: 122 LIVTDENGAIMIFNKAAESITGINMDQAIGKKIQEVMSDIKIADVLKTGKEEMNKKLKIG 181 Query: 231 SELIIGQLH------NIQGRQLFLMAFHQSH--TSFSVANAPDEPHIEQLVGECRVMRQL 282 + +++ + I+G + F Q + + + + ++G ++ Sbjct: 182 TNVVLTNITPIYTGTKIEGAVIVFYDFPQIEYLENELKRDRKLDKAFDIIIGNSGKLKDA 241 Query: 283 KRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELF 342 + S+ A + S+V++ GESGTGKE+VA AIH S R++KPFI +NCAAIP LLESELF Sbjct: 242 LTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIRVNCAAIPVTLLESELF 301 Query: 343 GYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSP 402 G+ +GAFTGA K G + A+ GT+FLDEIGD+P +Q KLLR I+ +E +G Sbjct: 302 GHERGAFTGAVTQ-KIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKT 360 Query: 403 IQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLH 462 I+VD+RII+ATN++L + I EG FREDL+YRLNVIP+ LPPLRER+ DI LLV +F+ Sbjct: 361 IKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKL 420 Query: 463 TRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN 522 ++L + ++ L + WPGN+REL N++E + + + ID LP + N Sbjct: 421 NKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITL-SDTDYIDYEDLPQYIRNE 479 Query: 523 GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYR 582 TT D + +++ +EE E ++I+ A+ R+ S + LG+ T+ Sbjct: 480 TTTVSDD-----DIIYLGENSELLTMEEYEYKIIKAAIQRYKSFNKAGKVLGLTHKTIAA 534 Query: 583 KIKKYELLN 591 K +K+ L++ Sbjct: 535 KARKFGLVD 543 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 160/455 (35%), Positives = 243/455 (53%), Gaps = 35/455 (7%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQ 222 ++D + G+LV+D + V+ +N + GV +IIGKP+ + T Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRPEAQLVSTLKDKS 63 Query: 223 HIVSWDDK---------------SELIIGQLHNIQGRQLFLMAFHQSHTSFS-------- 259 V K + ++G + +G+Q L Sbjct: 64 VRVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQWLQQK 123 Query: 260 -VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSG 318 A+ H E ++G + ++++ + + A +P V++ GESGTGKE+ A+AIH+ Sbjct: 124 VEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAIHRGGK 183 Query: 319 RRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 ++PF+ INCAAIP LLESELFGY GAFTGA NGK GL + A+ GTLFLDEIG++P Sbjct: 184 NASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDEIGELP 243 Query: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 L LQ+KLLR ++ I +GA +V RII+ATNQNLA +++G FREDL+YRL V Sbjct: 244 LSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYRLCVFQ 303 Query: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME 498 + +PPLRER+EDI LL L + I+ + +E L+ + WPGN+REL N ++ Sbjct: 304 LHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVRELKNALQ 363 Query: 499 YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIRE 558 + + ++ V+ + LPP+L + + ++ + LEE E+Q+I Sbjct: 364 FALCMMDE-PVLHPSHLPPHLATDQWQRSTPMSFTPPT------SLKAGLEEAERQLITN 416 Query: 559 ALSRHNS----KKQVADELGIGIATLYRKIKKYEL 589 L+ ++ KKQ A L I +ATLY K+KK+ L Sbjct: 417 VLANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 156/466 (33%), Positives = 227/466 (48%), Gaps = 34/466 (7%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF 212 + + D + + + VVD +V N+ A + G+ I+G PI Sbjct: 116 EQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIEEFFSNL 175 Query: 213 ESNFTHGHMQHIVSWDDK-------------------------SELIIGQLHNIQGRQLF 247 Q I + +E I ++ N+ + Sbjct: 176 IITAVLASSQAISDKYHQPKPGAHVLINAAPICCDGSIIGSIAAERDITEIVNLTQQLCA 235 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 A S + G V+RQ +IA S V++ GESGTGKE Sbjct: 236 TNAKVMSLKREIKEINAQPDPFAAICGHNTVLRQEIATARKIAISSVPVLIRGESGTGKE 295 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 V ARAIH S RR PF+ +NC AIP L ESE FGY GAFTGA GK GL + A+ G Sbjct: 296 VFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAHGG 354 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 TLFLDEIG++P +Q KLLR ++ + +G P+QVD+RII+AT++NL I + +FR Sbjct: 355 TLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQEFR 414 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 DL+YRLNV+ + LPPLR+R++DI LVH + G + P+V+ + ++ WP Sbjct: 415 HDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAVFLEYDWP 474 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N++E LV + G V+ LP +L G + L+ A Sbjct: 475 GNVRELYNVLERLVIL-ADGGVLKFADLPADLQQFGLLLPKKIN------LTAAQNLPAA 527 Query: 548 LEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYELLNT 592 E ME+ +I +AL+ +K Q A +LGI +TLY K+++ L + Sbjct: 528 TERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLNTS 573 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 249/471 (52%), Gaps = 41/471 (8%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 +N+ + + D + V++VD++ ++ +N+ L V + IG+P Sbjct: 5 LKNFENVVDVVDRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVEVDHN 64 Query: 206 RFRPLTFESNF-------------THGHMQHIVSWDDKSELIIG-----------QLHNI 241 P+ +S + I +D S I+G +L ++ Sbjct: 65 SKWPVVLKSGEFDIAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDL 124 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 + L + + + + M K+ + A + +V++ GE Sbjct: 125 ADKNKLLEKKLDHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGE 184 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SG GKE+ A+AIH S R + PFI +NCAAIPE LLESELFGY GAFTGAS GK G Sbjct: 185 SGVGKEIFAQAIHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKF 244 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + A+ GTLF DEIGDMP +QAKLLR I+ E+ +G +VD+RII+ATN+NL + + Sbjct: 245 ELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELV 304 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 A FREDLFYR+NV+ + +PPL++R+EDI LL FL+ + +G I+ + VE+L Sbjct: 305 ATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGEN-KQISQEAVEVL 363 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 +K+ WPGN+R+L N+++ L V VI+ + +P LL ++SE+ + Sbjct: 364 QKYDWPGNIRQLKNIIQRLA-VNAETTVIEKSDIPIKLLKQ--------LQISESPSYPE 414 Query: 542 DAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 + +E++EK++IRE L ++ +K A L I +TLYRK+KKY L Sbjct: 415 EGLNEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKKYGLKE 465 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 156/596 (26%), Positives = 280/596 (46%), Gaps = 62/596 (10%) Query: 23 MLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDP 82 ++A+ + + I +E R+ G + G +G+++ ++E + ++ Sbjct: 124 IIATDEKDIISIFNEEAERLLG-ISSGDAIGKKVYE-------IIEFTNLHEINRTGKSE 175 Query: 83 LCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIST 142 L N R TP+I+ + G +++ + + Sbjct: 176 LMVKE--IINNRILLINRTPIIIDKKPKGALAVFNDISKLE------------------- 214 Query: 143 IFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 K+ ++ ++ + +++ + G+ V++ + + +VN+ L+ L + +I+ Sbjct: 215 ----KVKDELKTVKDLKERLQLILETVQDGICVINSDGYITYVNKAYLRILNEKEEDILN 270 Query: 203 KPIRFRPLTFESNFTHGHMQHIVS-------------------WDDKSELIIGQLHNIQG 243 K IR + I+ D + ++ + N+ Sbjct: 271 KNIRDVSPEGARIKVLKTGESIIGAISYKENGVIIVSNVNPIVIDGEITGVVSIVKNVTE 330 Query: 244 RQLFLMAFHQS------HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 Q Q + + + +G + + A + ++V+ Sbjct: 331 VQKLSEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGHSGKILDALATTLKAAKTDTTVL 390 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GESGTGKE++A IH S PFI +NCAAIP+ LLESELFGY KGAFTGA K Sbjct: 391 IRGESGTGKELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESELFGYEKGAFTGAIKR-K 449 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A GT+ LDEIG+M +QAK+LR I+ +E IG I++++RII+AT++NL Sbjct: 450 LGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEETIKINVRIIAATHRNL 509 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + +FREDL+YRLNVIPI LPPLRER++DI L+ +F+ +R+ + D Sbjct: 510 EEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDKIGKRINKRITVVTNDA 569 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 +E L +++WPGN+REL NL+E ++ + EVI+ + LP + + T ++ + + Sbjct: 570 MESLLEYKWPGNIRELENLVERIMAL-NETEVIELSDLPAYMRKDINTVKNAIKSKNNNE 628 Query: 538 LS--LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 + ++ L+E EK +I +AL ++ S LG+ T+ K ++Y + Sbjct: 629 IDMLIETDEILPLKEYEKIIIEKALKKYGSYNAAGKALGLTHKTVAAKARQYGIEK 684 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 127 SDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI-FATMIDNMDQGVLVVDDENRVQFV 185 + L E D+++ + + N + I + N+ G++ D+++ + Sbjct: 77 KNALDELCDFLQSDFDLEDKSTINQVDNIINNNTITLEHVFSNIPNGIIATDEKDIISIF 136 Query: 186 NQTALKTLGVVQNNIIGKPIRFRP---LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 N+ A + LG+ + IGK + E N T + + L+I + I Sbjct: 137 NEEAERLLGISSGDAIGKKVYEIIEFTNLHEINRTGKSELMVKEIINNRILLINRTPIII 196 Query: 243 GRQ 245 ++ Sbjct: 197 DKK 199 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 155/490 (31%), Positives = 246/490 (50%), Gaps = 32/490 (6%) Query: 130 LREFSDYVRHISTIFVSKLL-EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQT 188 + + + I + +++ +++ + T+I D V V+D++ V+ Sbjct: 67 VVIVNGNLEPICCVTAQQMIPFLYNSYNDLLAFYNTVIQTTDSSVTVIDEKECVRTWTDG 126 Query: 189 ALKTLGVVQNNIIGKPI---------RFRPLTFESNFTHGHMQ-------------HIVS 226 A K V N IIG+PI + + Sbjct: 127 AEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLINSNPVYC 186 Query: 227 WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH-----IEQLVGECRVMRQ 281 D+ ++ + L F+ SH + + + G+ V+++ Sbjct: 187 NDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQR 246 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 +L ++ S+V+++GESG GKEV A+AIH+ S N PFI+INC AIPE L ESEL Sbjct: 247 TIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASETANAPFISINCGAIPEALFESEL 306 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FGY +GAF+GA++ GK G I+ A GTLFLDEIG+MPL +Q KLLR ++ R+ +G Sbjct: 307 FGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEK 366 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 I +D RII+ATN++L + + +G FREDL+YRLNV+ + +PPLRER+EDI L + FL+ Sbjct: 367 EINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLND 426 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN 521 + + ++ L + WPGN+REL N++E LV G +I LP Sbjct: 427 FSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDG-IIKQEYLP--FHT 483 Query: 522 NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATL 580 N T E + ++ + + ++E EK++I AL +K + A +LG+ ATL Sbjct: 484 NDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDGNKLECAKQLGVTRATL 543 Query: 581 YRKIKKYELL 590 Y ++K+ L Sbjct: 544 YNRLKRLGLQ 553 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 174/580 (30%), Positives = 259/580 (44%), Gaps = 56/580 (9%) Query: 23 MLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDP 82 +L SV + V E AG K G G VL TK Sbjct: 110 ILKSVGEKNVLKRAEKRYIFAGGTWTEKSAGTNAVGM------VLRTKQS--------SQ 155 Query: 83 LCEGCDSKENCREKAFLGTPV--ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHI 140 + EN + + PV +G+++L + H + Sbjct: 156 VLFSEHFCENVHDWYCVAFPVLAPFTKELLGIVNLAGNASDVHRHSIGY------ALAEA 209 Query: 141 STIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI 200 + +S T ++ MD VL VD +++ N+ A ++ Sbjct: 210 KNMALSLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQILTRNEGANRSERFQNETS 269 Query: 201 IGKPIRFRPLTFESNFTHGHMQHIVSWDDK-------SELIIGQLHNIQGRQLFLMAFHQ 253 I + L + + D S + +I G +FL + Sbjct: 270 IASFPELKALVANVRTNGQQIVNEQIQDGSTNKRYQVSIYPVRFQDHIYGVVIFLQQDQR 329 Query: 254 SHTSFSVANAPD--EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + +VG + L + + A S++++ GE+GTGKEV+A+ Sbjct: 330 VVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVLAQ 389 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH+ S R KPF+AINC A+P LLESEL GY GAFTG+ A G G + AN GT+FL Sbjct: 390 AIHQASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTIFL 449 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMPL LQ LLR +E R + IG S PI VD+R+ISATN++L + + +G FREDL+ Sbjct: 450 DEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFREDLY 509 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL V+ + LPPLRER EDI +L+ FL + G + + + IL ++ WPGN+R Sbjct: 510 YRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILERYHWPGNIR 569 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N+++ + V+ G+VI LP + + + +E Sbjct: 570 ELKNVLQQAMFVM-DGDVIHPHHLPDSFYSQTQS-----------------------DEY 605 Query: 552 EKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 EKQ + AL + + + A L + AT+YR++KKY L Sbjct: 606 EKQKLLRALEQQEGNVTKAAASLNMSRATIYRRLKKYRLE 645 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 151/559 (27%), Positives = 265/559 (47%), Gaps = 35/559 (6%) Query: 51 FLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL---QD 107 + G SR + + R L N R + + + Sbjct: 115 RDNNYVPGCSRAEEVAGTNAISLALIEKRPVQLTGAEHW--NVRHHLWTCAAAPVFSPEG 172 Query: 108 RCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMID 167 +G ++L T H + ++ +R + E + A+++ Sbjct: 173 MLLGAVTLSGETTRAHRHTLGMVISAAEAIRER-----LREREMAEEKRGSDVLLASVLG 227 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP-IRFRPLTFESNFTHGHMQHIVS 226 ++ + ++++D V +N A K+L V I GKP +R P E + Sbjct: 228 SISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQGKPFVRLFPSQPELAQLLPVRGDNAA 287 Query: 227 WDDKSEL------------IIGQLHNIQGRQLFLMAFHQSHTSFSV-ANAPDEPHIEQLV 273 ++ SE ++ + G L L + + + ++ Sbjct: 288 FEVSSERPGGRGHFVITPYVMYANEAVTGAILALRERREFLNEVREFSGFNAVFTFDDIL 347 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 GE + + L A + ++++GE+GTGKE+ A++IH S RR+ PF+A+NCAAIP Sbjct: 348 GESPALLRQIELARTAARQNTRILILGETGTGKELFAQSIHNCSPRRSGPFVALNCAAIP 407 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +L+ESE+FGY GAFTGA G+ G ++ A+ GT+FLDEI MPL LQ+KLLRA++ Sbjct: 408 RELMESEIFGYRSGAFTGARKGGQVGKLELADGGTIFLDEINQMPLDLQSKLLRALQEGT 467 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 I +G + PI++D+R+I+A N++L G+FR+DL+YRL+V+ + LPPLRER +DI L Sbjct: 468 ITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQDLYYRLSVVELALPPLRERGDDIAL 527 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 + + L ++ ++P +E+LR++ WPGN+REL N++E + ++ G +I Sbjct: 528 IARHLLDTLGEKIDKPALSLSPPAIELLRQYPWPGNVRELENVLE-MGAIMAEGSIIKPG 586 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVADE 572 L + + T E+ S +IR A+ + + V + Sbjct: 587 HLAYRMRDRRTPERQHAAASSRDQSIPAIQL---------DLIRSAIEEFNGNVDLVGRK 637 Query: 573 LGIGIATLYRKIKKYELLN 591 LG+ AT+YR+++++ ++ Sbjct: 638 LGLSRATVYRRMQQHGIVK 656 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 146/463 (31%), Positives = 231/463 (49%), Gaps = 48/463 (10%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL------- 210 + + ++D M +G+L+VD + ++ VN+ + G ++ +IG Sbjct: 23 LETHWHEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCSLFKCDACRRVR 82 Query: 211 ---------TFESNFTHGHMQHIVSWDDKSELI--------------IGQLHNIQGRQLF 247 FE I+ D I +G + + Sbjct: 83 SEARQAWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTVGAVETMTDLSEL 142 Query: 248 LMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 ++ +E +VG MR++ LI + A S + V + GESGTGKE Sbjct: 143 --DRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKE 200 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VARAIH L R ++P++ NCAA+ E LLESELFG+VKGAFTGA + G +AA+ G Sbjct: 201 LVARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFR-HRQGRFEAAHGG 259 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 +FLDEIGD+P+ +Q KLLR +E + +G + + VD+RII+ATN+ L + I++G+FR Sbjct: 260 DIFLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFR 319 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDLFYR+NVIP+ LP LRER+EDI LL YF+ + G++P + + + WP Sbjct: 320 EDLFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWP 379 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL + +EY + G I+ LP N++ Sbjct: 380 GNVRELKSSLEYAFVLADHGH-IEPEHLPHNVVVTAPPVAEPRYGNPGH----------- 427 Query: 548 LEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 + ++Q + +AL + +K + A LGI T+ +++K+ + Sbjct: 428 --DSQRQQLVQALHQAGGNKSEAARILGINRVTVLNRMRKHGI 468 >UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clostridium RepID=A5MZI8_CLOK5 Length = 656 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 159/613 (25%), Positives = 284/613 (46%), Gaps = 55/613 (8%) Query: 3 LATTQSVLMQIQPTIQRFARMLASVLQLEVEIV--------DENLCRVAGTGAYGKFLGR 54 L ++ ++ T ++ +L + ++I+ + +L + G + +G Sbjct: 70 LPIMLNLYEILKNT--NYSIILTDENAVILKILGNEKIMAQNRDLDFLEGRRWKEEDVGT 127 Query: 55 QLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVI 113 G L ++T + K C +P+ + +G I Sbjct: 128 NAIGTCIYLDKPIQT--------LGAEHY-SKRQQKWTCS-----ASPIHDSKGNIIGCI 173 Query: 114 SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGV 173 L + H + E S+ ++ +Q K +++ +G+ Sbjct: 174 DLSGSFEDFHTHTLGIVVEASNTIQ------------EQFSVAEHRKWTEVAFNSIKEGI 221 Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNI---------------IGKPIRFRPLTFESNFTH 218 LV+D++ ++++ N+ LG+ +N + +G I+ T Sbjct: 222 LVIDNDFKLEYFNENICNILGIDKNQMYKLFMKSLLKDVIKDMG-DIKRLNKITYREITM 280 Query: 219 GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 V + ++ + L A +A + + ++ + Sbjct: 281 YVKNRRVECNVSINPVVMNEKHTGFVILVKKADTVRTMVNKIAGFSSKYDFDNILTQNAR 340 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 M+ + RIA + +V++ GESGTGKE+ A +IH S R + PF+AINC+A+P+ L+E Sbjct: 341 MKGIIEDARRIAKNDCTVLITGESGTGKELFAHSIHNGSKRCSGPFVAINCSALPKDLVE 400 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY KG+FTGAS G G + AN GT+FLDEIG++PL +Q KLLR ++ I IG Sbjct: 401 SELFGYEKGSFTGASKEGNPGKFELANGGTIFLDEIGELPLEIQPKLLRVLDNHAITRIG 460 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 +++R+I+ATN+NL + + FR DL++RLNV I L P+RER+EDIE+ + +F Sbjct: 461 GKYERDLNVRVIAATNRNLFKEVKLKNFRSDLYFRLNVFNINLIPVRERREDIEMFIKFF 520 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L ++ I + +++++ + W GN+RE+ N+++ + + G I LLP Sbjct: 521 LEKLAQKNKVKINNIDEEFMDVVKNYEWLGNVREIENVVQRVYYLSEKGR-ITKALLPGY 579 Query: 519 LLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGI 577 ++N + D + S + L+++EKQ+I +AL + + + +G Sbjct: 580 IMNYKKSSTEDDMKFSSDSYNEFKPEIQTLDQVEKQLIIKALRYCNGNVVNASKLINMGK 639 Query: 578 ATLYRKIKKYELL 590 +TLYRKIKKY L Sbjct: 640 STLYRKIKKYNLE 652 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 148/510 (29%), Positives = 244/510 (47%), Gaps = 41/510 (8%) Query: 111 GVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMD 170 G ++ + E F Y+ + + L+ + I+K + ++ Sbjct: 49 GEFKIVQTKNGLLELCYVETEFFKGYIGVMCNAELRDLV--INKLEEINKELEAIFESSH 106 Query: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------------------------ 206 G++V D+ +N + + G+ + IIGK + Sbjct: 107 DGIVVADENGVFIRINSSYERITGIPREEIIGKTAQSIVEKGLVSDSVTIHVLKTGQSHT 166 Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV-----A 261 F + + +++ ++ + ++ +S + Sbjct: 167 FSQTFRSGRQSVITGSPVFDSNNRIIRVVTNVRDMTEINRLKEELAESQKKLTQYSQIVE 226 Query: 262 NAPDEPHI-EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 +E E+L+ R M ++ + A + +++ GESG GKEV+A +++ S R+ Sbjct: 227 TMTEEQMFNEKLIFRSRKMEVVRDSAIKFAKVDAPLLITGESGVGKEVIADLVYRYSPRK 286 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 PF+ INC AIPE LLESELFGY GAFTGA G+TGL + AN GT+ LDEIG++PL Sbjct: 287 GLPFLKINCGAIPETLLESELFGYEGGAFTGAKKEGRTGLFEMANGGTVMLDEIGELPLA 346 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 LQ KLLR ++ +E +G ++VD+R+I+ATN++L + + + +FR DLFYRLNV+ I Sbjct: 347 LQVKLLRFVQQKEFYRVGGKKVVKVDVRLIAATNRDLQEMVNQKQFRSDLFYRLNVLRIH 406 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLRER EDI LV+Y L + ++ I+ DV + W GN+REL NL+E L Sbjct: 407 IPPLRERPEDIIPLVNYLLDKYNKKYNVS-KRISGDVYHAFTNYTWVGNVRELENLIERL 465 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 V + E I LP + + D + + A EE E++ AL Sbjct: 466 VVICDRDE-ITLDYLPDEMKKAIYVWRDDS-------IGREQTYKEAKEEFEREFFCRAL 517 Query: 561 SRHNSKKQVADELGIGIATLYRKIKKYELL 590 ++ S +Q A++LG+ +T+ +K KY + Sbjct: 518 EKYKSSRQAAEKLGLDHSTIVKKAAKYGIK 547 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 174/610 (28%), Positives = 277/610 (45%), Gaps = 96/610 (15%) Query: 2 ELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDEN----------LCRVAGTGAYGKF 51 E ++L +I + + +L+L + I+ E+ R +G + Sbjct: 13 EQPNELTLLAEISRALIN-EEDINKILRLVLLIMSEHMGMLRGVITIFNRDSGEIVIKES 71 Query: 52 LGRQLSGNSR--------LLRHVLETKTEKVVTQSRFDPLCEG---CDSKENCREKAFLG 100 G +R ++ V+ET VV +PL K+ + F+ Sbjct: 72 FGLSPEEQARGRYKLGEGIIGQVVETGKPVVVPSIAKEPLFLDKTRSREKDEKNDLCFVC 131 Query: 101 TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK 160 P+ +G +S R +S+ L G Sbjct: 132 VPIRAGQEVIGTLSAD---------------------RKVSSKNPRVALTQTQGGKQTRG 170 Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGH 220 + G+ D L ++ +I + +R R + E N H Sbjct: 171 -------CGENGMFNSDVN------------LLSIIAA-MISQAVRLRQVAHEENLYHWK 210 Query: 221 MQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMR 280 +S + N ++ ++G + MR Sbjct: 211 SNLQISAPEGKSHNSDVFDNPNSIEVGEQP-------------------ANIIGNAKSMR 251 Query: 281 QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340 + ++I +IAP+ ++V+++GESG GKE+VA AIH S R PFI NCAA+PE ++ESE Sbjct: 252 VVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNCAALPESIVESE 311 Query: 341 LFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS 400 LFG+ +GAFTGASA K G + ANTGT+FLDE+G++ L +QAKLLR ++ +E +G + Sbjct: 312 LFGHERGAFTGASATRK-GRFELANTGTIFLDEVGELSLSIQAKLLRILQEKEFERVGGN 370 Query: 401 SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460 I+ D+RII+ATN+NL + I EGKFREDLFYRLN+ P+T+PPLRER+ DI LL YF+ Sbjct: 371 KTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDILLLADYFVE 430 Query: 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL 520 + + G I+ +++L ++ WPGN+REL N +E V + G VI LPP L Sbjct: 431 KYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDG-VIHGYHLPPTLQ 489 Query: 521 NNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIAT 579 ++ L+ +E ++I EAL + + A ELG+ Sbjct: 490 TAESSGT-----------PCAGPLQQRLDALEYELIVEALKNTKGNMSKAAMELGLTDRV 538 Query: 580 LYRKIKKYEL 589 + ++KK+++ Sbjct: 539 MGLRVKKFDI 548 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 172/612 (28%), Positives = 279/612 (45%), Gaps = 75/612 (12%) Query: 6 TQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 L++ T++ + + + V + DE+L + ++ K G + + Sbjct: 118 MVMTLLKSASTLKDQLETILTHSNIGVLMTDEHLRVIYANASFSKITG---HPINSIYSK 174 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 L + ++ E S + + Q + + Sbjct: 175 DLNETFPSLPMETHGPYHSEEYKSILHMSAYETVT---HKQGKII--------------- 216 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFV 185 + IS I K+ E+ + T +D+ G+L+ D+ N ++ V Sbjct: 217 ----------LFQDISEI--EKMAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMV 264 Query: 186 NQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHM------------------QHIVSW 227 + L+ + + +++ K + + + + + Sbjct: 265 SPPLLELFNLDKKDVLHKKVDIVMPQLKLDQVFKTEAAEVSDLHERNGIKYIVHRIPIKK 324 Query: 228 DDKSELIIGQL--HNIQGRQLFLMAFHQSHT------SFSVANAPDEPHIEQLVGECRVM 279 + K IG++ + ++ + + + ++ + M Sbjct: 325 EGKVIGAIGKVMFRQLNEVSALFKRLQKAESKASFYHQQLQKSETARFTWDHILSKHPYM 384 Query: 280 RQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLES 339 +LK+ ++ A S+V++ GESGTGKE+ A AIH S R + F+ +NCAAIPE LLES Sbjct: 385 DKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLLES 444 Query: 340 ELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGA 399 E FGY +GAFTGA GK G AN GTLFLDEIGDM + LQAKLLR ++ RE +G Sbjct: 445 EFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGG 504 Query: 400 SSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFL 459 +S I+VD+RII+ATN++L + + EG+FREDL+YRLNVI + +PPLRER D+E L + Sbjct: 505 NSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLM 564 Query: 460 HLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNL 519 LG+ GI+P E L ++ WPGN+REL N++E + G I LP L Sbjct: 565 IELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGN-IQVEDLPDYL 623 Query: 520 LNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVADELGIGIA 578 ++ T + + ++ E+ E + IR+AL + +K Q A LGI + Sbjct: 624 IDQLTIPKKEKNGLA--------------EDAELEAIRKALTQANGNKAQAARLLGISRS 669 Query: 579 TLYRKIKKYELL 590 LY K+KKYEL Sbjct: 670 GLYEKLKKYELS 681 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 152/468 (32%), Positives = 239/468 (51%), Gaps = 40/468 (8%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI---- 205 E D+ ++ M++ G+++VD E + ++ LGV Q IGK + Sbjct: 105 EFLHVNDHQVELLEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVTEVI 164 Query: 206 ---RFRPLTFESNFTHGHMQHIVSWDDKSELI-------------------IGQLHNIQG 243 R + +Q I + + +G +++ Sbjct: 165 ENTRMHIVAKSGKTEVAELQKIRGDYMIATRVPIIKNGQVTGAVGKVLFKNVGGFNSLYK 224 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 R + + + ++G ++ Q K+ + A S S+V+++GESG Sbjct: 225 RVNSMEKELKRYKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSDSNVLLLGESG 284 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+ A +IH S R F+ +NCAAIP LLESELFGY +G+FTGA GK G +A Sbjct: 285 TGKELFAHSIHNESRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTGAIKGGKKGKFEA 344 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GT+FLDEIG++PL +Q K LR ++ +E+ IG+S+ VD+R+I+ATN++L + + Sbjct: 345 ADGGTIFLDEIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIAATNRDLEKMVQA 404 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G+FR DL+YRLNV+PIT+P LR+R+ DI L YFL + R+ V I P+ + L + Sbjct: 405 GEFRLDLYYRLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNMVARDIHPEAILALEQ 464 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E VNV + ++I LP + S Sbjct: 465 YEWPGNIRELENVIERAVNVAENEKMIRRCHLPEKITG-------------VQFRSGVRP 511 Query: 544 GGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYELL 590 +EE EK+ I AL +N++ + A+ L I +LY K+KK+ L Sbjct: 512 LEQVMEETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKKHRLS 559 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 269/580 (46%), Gaps = 80/580 (13%) Query: 32 VEIVDEN---LCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCD 88 V +VD N L A + + +R ++ T V ++ + G Sbjct: 22 VIVVDRNGKILLINASAKKLLQIENENW--EGKDIRDLIPTTQLPHVLENGTSSI--GVK 77 Query: 89 SKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKL 148 R+ TP+ +G I + + IS + Sbjct: 78 MNIAGRQCLVNRTPLYRNGELIGAIGV---------------------LEDISQM----- 111 Query: 149 LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP---- 204 + K T+I+ G+ VVD VN G + ++GK Sbjct: 112 ----EHYHTLLKQMETIIEFSTDGIYVVDQNGITTMVNSAYEAITGFRREELVGKHMYDL 167 Query: 205 --------------------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR 244 I + + E+++ + +I Sbjct: 168 VKKGYFDQSVSLLVLQQKKRISILQKIGGKKDVIVTGNPVFNEQGDIEMVVTSVRDISHL 227 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQ----LVGECRVMRQLKRLISRIAPSPSSVMVVG 300 ++ + ++ ++ +V M+QL + +IAP P++V++ G Sbjct: 228 IQMKAELEKAKSFSEMSQHRYTFSVDGSKEQIVFRSPSMKQLFDKVEQIAPYPTTVLLTG 287 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 SG GKEV+A IH LS R+NKPFI +NC AIPE LLESELFGY KGAFTGA +GK GL Sbjct: 288 PSGVGKEVIANLIHHLSPRKNKPFIKVNCGAIPEPLLESELFGYEKGAFTGARQDGKIGL 347 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 ++ A+ GT+ LDEIG+MPL LQ KLLR ++ +++ IG+ ++D+RII+ATNQNL + Sbjct: 348 LELADKGTIMLDEIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLKEL 407 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 I++GKFREDL+YRL VI + +PPL ER EDIE L+ ++ + + ++P EI Sbjct: 408 ISQGKFREDLYYRLQVIEMYIPPLAERPEDIEPLIDHYFSFYCKLYRIN-KHLSPKTKEI 466 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L+++ WPGN+REL NLME +V V ++I+ LP ++ + + Sbjct: 467 LQRYHWPGNVRELKNLMENMV-VSVPSQLIEPHDLPLHIYDQTAA-------------TS 512 Query: 541 DDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATL 580 +E+ E+++I EA+ ++ S ++ A +LGI +TL Sbjct: 513 PLTLKERVEQFERRLIYEAIEKNTSLRKAAQQLGIDHSTL 552 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 11/123 (8%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE--SNFTH 218 I+ + ++ GV+VVD ++ +N +A K L + N GK IR T + + Sbjct: 10 IWENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQLPHVLEN 69 Query: 219 GHMQHIVSWDDKSELII---------GQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHI 269 G V + + G+L G + HT E Sbjct: 70 GTSSIGVKMNIAGRQCLVNRTPLYRNGELIGAIGVLEDISQMEHYHTLLKQMETIIEFST 129 Query: 270 EQL 272 + + Sbjct: 130 DGI 132 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 169/519 (32%), Positives = 262/519 (50%), Gaps = 45/519 (8%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA 163 +R V ++ E + I+ N + S + S + + K + Sbjct: 37 KSNNRHVDIL----KNKETHKKINKNSKVESKISINESECATTIDYKLYSEMKKDIKYYK 92 Query: 164 TMID-------NMDQGVLVVDDENRVQFVNQTALKTLGVVQNN--IIG---KPIRFRPLT 211 +++D +++ ++VVD + +++ K + +G K + Sbjct: 93 SVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCKDPEGKYVGDVIKDTMLHRVL 152 Query: 212 FESNFTHGHMQHIVSWD--------DKSELIIGQLHNIQ-----------GRQLFLMAFH 252 N G +Q I K IIG + I G+ H Sbjct: 153 KTGNIESGEVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTH 212 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + + + S N + + +VG+ +K L + A + S+V++VGESGTGKE+ A + Sbjct: 213 KCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHS 272 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH S RR PFI INC AIP +LLESELFGY GAFTGA GK G + AN GT+FLD Sbjct: 273 IHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGTIFLD 332 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGDMP+ +Q KLLR I+ RE+ +G + ++D+RII+ATN+NL + + + KFREDL+Y Sbjct: 333 EIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFREDLYY 392 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVI I +P LRER+EDI L+ + + + RLG GI+ + E L + WPGN+RE Sbjct: 393 RLNVIRINVPSLRERKEDILLISDFLVKKVSHRLGICIKGISKEAKEYLCNYNWPGNIRE 452 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E N++ S VI LP +L + + +A + + E+E Sbjct: 453 LENVIERSANLLDSDFVIKPKHLPKEILKSY---------IVKAPTKENKYLKDIISEVE 503 Query: 553 KQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 K++I L + + +K + + LGI A LY+KI +Y ++ Sbjct: 504 KEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV 542 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 9/153 (5%) Query: 12 QIQPTIQRFARMLASVLQLEVEI------VDENLCRVAGTGAYGKFLGRQLSGNSRLLRH 65 +++ I+ + +L V ++ I VD+N + + Y KF+ + + + Sbjct: 83 EMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCK-DPEGKYVGD 141 Query: 66 VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEH 125 V++ V ++ G K N ++ + P+ + R +G I I + Sbjct: 142 VIKDTMLHRVLKTGNIE--SGEVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFY 199 Query: 126 ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNI 158 S K + +I Sbjct: 200 FLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDI 232 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 158/522 (30%), Positives = 251/522 (48%), Gaps = 39/522 (7%) Query: 98 FLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLL-EDQGPGD 156 +I D + + A ++E I + + I +++ + Sbjct: 42 EYNCAIIYVDDSFTAL-IDAFSYELAVIILNEND------EPLCCITSQQMIPFLYKSYN 94 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI---------RF 207 + + T+I D V V+D + V+ A K V N IIG+PI Sbjct: 95 ELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEI 154 Query: 208 RPLTFESNFTHGHMQ-------------HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQS 254 + + D+ ++ + L F+ S Sbjct: 155 LQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMS 214 Query: 255 HTSFSVANAPDEPH-----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 H + + + G+ V+++ +L ++ S+V+++GESG GKEV Sbjct: 215 HEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVF 274 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK G I+ A GTL Sbjct: 275 AKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTL 334 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L + + +G FRED Sbjct: 335 FLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFRED 394 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ L + WPGN Sbjct: 395 LYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGN 454 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E LV G +I LP T + + ++ + + ++ Sbjct: 455 IRELRNVVERLVVFATDG-IIKQEYLP--FHTTETLDNHTAHSLLLSNNNTILSLQEEMD 511 Query: 550 EMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 E EK++I AL + +K + A +LG+ ATLY ++KK L Sbjct: 512 EHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLRLQ 553 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 154/502 (30%), Positives = 253/502 (50%), Gaps = 27/502 (5%) Query: 115 LIAVTHEQQEHI---SDNLREFSDYVRHISTI--FVSKLLEDQGPGDNISKIFATMIDNM 169 ++ V+H QQ I S + +R + T+ VS L D P + + T++D + Sbjct: 35 VMEVSHGQQMMIKFRSPDQEGSETLIRDLLTVQGVVSVTLVDYMPYERREQELKTILDLV 94 Query: 170 DQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR---------------PLTFES 214 +G++ V+ ++V +N+ A + + + P + + Sbjct: 95 SEGIIAVNTNHKVTHINEVAAQIFHTTPEEALNQDAELLFEADAPIFETLKTGIPYSLKE 154 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVG 274 + + I ++ + I G V P + + ++ Sbjct: 155 RKIRKNQKLIHFLTSGVPILNKRGQIIGGVMTIKDFRQVEELLSKVERKPQSINFDSIIY 214 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 E R MR L +A S++++ GESGTGKE+ A+AIH S R + FI INCAA+P+ Sbjct: 215 ESRRMRDLIETAKTVARGTSTILLRGESGTGKELFAKAIHAESPRSRQAFIPINCAALPD 274 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 LLESELFGY +G+FTGA+ GK GL + A+ GTLFLDEIG++ +Q +LLR ++ I Sbjct: 275 TLLESELFGYEEGSFTGATKGGKKGLFEQAHGGTLFLDEIGEITPQVQVRLLRVLQEGTI 334 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 IG S I VD+RII+AT++NL + I +G+FREDL+YRLNVIP+ +P LRER EDI L+ Sbjct: 335 RRIGGSKEIPVDVRIIAATHRNLEELIDKGQFREDLYYRLNVIPLHIPSLRERPEDIPLI 394 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV----- 509 R+LG + + ++LR +WPGN+R+L NL+E ++N+ + E+ Sbjct: 395 AQVLTRKIARKLGKSEVHLTKESADLLRAQKWPGNVRQLENLLERIINLNSNSEIKPDSF 454 Query: 510 IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQV 569 + L P L + ++ ++ + ++E+Q++ + L+ H S ++ Sbjct: 455 YEWGDLTPAL--PVSESENTAHQLIIPFGEPWPPLKDIVAQVERQVLLKVLAEHPSSRKA 512 Query: 570 ADELGIGIATLYRKIKKYELLN 591 LG+ T+ K+ Y L Sbjct: 513 GKILGVSNTTILNKMNSYGLGK 534 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 152/467 (32%), Positives = 235/467 (50%), Gaps = 31/467 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 + + + T+I D V V+D + V+ A K V N IIG+PI Sbjct: 6 YKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDY 65 Query: 206 ---RFRPLTFESNFTHGHMQ-------------HIVSWDDKSELIIGQLHNIQGRQLFLM 249 + + D+ ++ + L Sbjct: 66 KDLEILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEK 125 Query: 250 AFHQSHTSFSVANAPDEPH-----IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 F+ SH + + + G+ V+++ +L ++ S+V+++GESG Sbjct: 126 LFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGV 185 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKEV A+AIH+ S PFI+INC AIPE L ESELFGY +GAF+GA++ GK G I+ A Sbjct: 186 GKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELA 245 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 GTLFLDEIG+MPL +Q KLLR ++ R+ +G I +D RII+ATN++L + + +G Sbjct: 246 QGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKG 305 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 FREDL+YRLNV+ + +PPLRER+EDI L + FL+ + + ++ L + Sbjct: 306 TFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHY 365 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++E LV G +I LP T + + ++ + + Sbjct: 366 NWPGNIRELRNVVERLVVFATDG-IIKQEYLP--FHTTETLDNHTAHSLLLSNNNTILSL 422 Query: 545 GTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 ++E EK++I AL + +K + A +LG+ ATLY ++KK L Sbjct: 423 QEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ 469 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 163/435 (37%), Positives = 241/435 (55%), Gaps = 22/435 (5%) Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNI--IGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 +V D F+N+T + + + I IG P+ +S+++ Sbjct: 99 VVPDVHREPLFLNRTRAR-TNLPKGEISFIGVPVMLAENPVGVLSVDRLFGPEISFEEDI 157 Query: 232 ELI------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 + IGQ N+Q + S D + ++G+C+ ++++ Sbjct: 158 RFLTVVATMIGQFLNLQRTFASSQQVLREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDY 217 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 I+++APS ++ +++GESGTGKE+VARAIH+ R +PFI +NCAA+PE LLESEL G+ Sbjct: 218 IAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCAALPENLLESELLGHE 277 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA K G + A+ GTLFLDEIG++PL LQAKLLR ++ R +G S I V Sbjct: 278 KGAFTGAV-GQKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAV 336 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+RII+ATN++L + EG FR DL+YRLNV+P+ LPPLRER+EDI LL+ +FL R Sbjct: 337 DVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRH 396 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGT- 524 A V+ L ++ WPGN+REL NL+E LV +V GEV++ LP L + Sbjct: 397 NRRRVK-FAAAVIRRLNEYSWPGNVRELQNLVERLVIMV-DGEVVNLDDLPAYLADPDPA 454 Query: 525 --------TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGI 575 +Q + + + A G +L EMEK+ + AL RH + + A +LGI Sbjct: 455 NRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRRHGWVQTRAARDLGI 514 Query: 576 GIATLYRKIKKYELL 590 + +I+KY + Sbjct: 515 TPRQMGYRIRKYAIE 529 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 152/343 (44%), Positives = 212/343 (61%), Gaps = 11/343 (3%) Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + + + +++ + G+ + ++K+LI + A S +V++ GESG GKE+ Sbjct: 399 RGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEI 458 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 AR IH LS R +KPF+AINCAAIPE LLESELFGY +GAFTGA GK G I+ A+ GT Sbjct: 459 AARTIHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGT 518 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 LFLDEIGDMPL +Q KLLR I+ RE IG+++P +VDIRII+ATNQ LA+ + EG+FR Sbjct: 519 LFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRM 578 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV I +PPLRER++DI LLV+ F++ R + + + IL + WPG Sbjct: 579 DLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPG 638 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N++E + G +I LP L + +S ++ A+ Sbjct: 639 NIRELQNVIERAYYL-AEGNLIKPEHLPAQLTSK---------ALSGERITKITTFKEAV 688 Query: 549 EEMEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYELL 590 E+EK++I E L N K A LGI ATLY+KIK+Y + Sbjct: 689 AEVEKKLIIEGLKATNYNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 165/519 (31%), Positives = 256/519 (49%), Gaps = 47/519 (9%) Query: 103 VILQDRCVGVIS------LIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGD 156 +I +D C I L+ +Q+ + + V KL E Sbjct: 86 IIDEDTCFSEICHKPIDRLVIFNQKQKLTGVLTRIDLINKVHRALENTEDKLAEAF---- 141 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 ++ ++I+ G++VVD + VQ VN + + L ++ G + PL + Sbjct: 142 ETNQRLRSIIEASYDGIIVVDSQGVVQMVNSSYFR-LQDSSHDPAGTSLEQIPLDCHDDV 200 Query: 217 THG-------------------------HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 I+ + ++ LH+ + Sbjct: 201 IKVFQEVMQQGKVAFARYQGENLSELTITGSPILDDQNSPVHVVISLHDFTELNQLRLQS 260 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + ++ + L+ M ++ + R++ S+V++ GESG GKEV+AR Sbjct: 261 ARYSEELKSLRTKNQ---KDLIFHDTAMERVVKKALRVSEVDSTVLITGESGVGKEVIAR 317 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 IH+ S R PFI INC AIPE LLESELFGY KGAFTGA+ GK G+++ AN GTL L Sbjct: 318 TIHRNSPRAEGPFIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGMMELANGGTLLL 377 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE+GD+PL LQ KLLRA++ +EI IG + +++++RI++ATN+NL Q IAE KFREDLF Sbjct: 378 DEVGDLPLNLQVKLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLF 437 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRLNV+PI +PPLRER+ DI L +FL + + +V ++ ++ WPGN+R Sbjct: 438 YRLNVVPIHIPPLRERKSDILPLSMHFLEKFNNKYNFH-RLFSSEVFKLFEQYPWPGNIR 496 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL+NL+E L+ + E I LPP T + + A E++ Sbjct: 497 ELANLVERLIIM-SEQETIYPDQLPPTFFGK------PSTSPLQISIDEIIPLKEAREQV 549 Query: 552 EKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 E ++I +AL ++ S ++ D LG+ +TL RK + + Sbjct: 550 ESELIVKALKQYRSLRRAGDALGVAHSTLLRKARALGIS 588 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 145/458 (31%), Positives = 230/458 (50%), Gaps = 39/458 (8%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL--------TFE 213 T++ ++++ + +V+ + + + N+ A K + + IIG+ ++ L E Sbjct: 12 LHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVLE 71 Query: 214 SNFTHGHMQHIVSWDD--------------------KSELIIGQLHNIQGRQLFLMAFHQ 253 + + H+ D E I + + Q Sbjct: 72 NQQPVRDIYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSEELQ 131 Query: 254 SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 + N D+P + G ++ + + ++A + +++++ GESG GKE+ A+AI Sbjct: 132 QLKQQMIQNNRDDP-FSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAI 190 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H+ S R K FI INC AIP L ESELFGY GA+TGA+ GK G I+ A+ GTLFLDE Sbjct: 191 HEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDE 250 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 +G++PL +Q KLLRA++ +EI IG +P ++D+RII+ATN+ L + G FR DLFYR Sbjct: 251 VGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYR 310 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNV +PPLRER +DI L H+F + + P + + + L + WPGN+REL Sbjct: 311 LNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIREL 370 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 N +E L+ + E+ +S +L SE + E +EK Sbjct: 371 RNFIERLIVLHEGSEIYESDIL---------KLLPQAKSFSEPVSQTTLSLTDERESLEK 421 Query: 554 QMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 I + L + + +K A +LG+ A LY+KIKKY + Sbjct: 422 TRILQTLQQTYGNKSITAKKLGMSRANLYKKIKKYRIT 459 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 241/490 (49%), Gaps = 29/490 (5%) Query: 127 SDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFAT------MIDNMDQGVLVVDDEN 180 R + + S +++ + F + ++V D Sbjct: 42 LGLHRSSILLLENDSDELRTEIAHGLSEEEIRKGRFKEGEGITGAVLKTGDPIVVPDISR 101 Query: 181 RVQFVNQTALKTLGVVQNNI---------IGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 +F+N+T ++ + + + + G++ + Sbjct: 102 EPRFLNRTGSRSERASRGKLAFLAVPLTFQARKVGVLSADCTIEPGSGNLDEELRVLTTI 161 Query: 232 ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 II Q ++ + + + + D IE +G R+M+Q+ + +A Sbjct: 162 SSIIAQAVILRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRIMQQISESVHLVAK 221 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 S ++V+++GESGTGKEVVA+AIH S R +PF+ INCAAIPE LLESELFG+ KGAFTG Sbjct: 222 SRATVLIMGESGTGKEVVAKAIHFNSPRNRRPFVQINCAAIPESLLESELFGHEKGAFTG 281 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A + + G + A+ GTLFLDE+G++ +Q KLLR ++ R + +G + I VD+RII+ Sbjct: 282 AHVS-RPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIA 340 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NL + I + +FREDL+YRLNV+PI LPPLR+R+EDI LLV++FL + G Sbjct: 341 ATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRSM- 399 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV----------IDSTLLP-PNLL 520 I+P+ + L +H WPGN+REL N ME LV + + + + + LP + Sbjct: 400 TISPEAISALIEHDWPGNVRELENTMERLVVMTQADSIDITDVRRTLALFPSTLPHRREV 459 Query: 521 NNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIAT 579 + E + A+ E+E+ I + L R K + A LGI Sbjct: 460 EEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILDVLDRTGWIKTRAAALLGITPRQ 519 Query: 580 LYRKIKKYEL 589 L ++ KY + Sbjct: 520 LGYRMMKYGI 529 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 158/580 (27%), Positives = 264/580 (45%), Gaps = 61/580 (10%) Query: 32 VEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKE 91 V + +++ R+ G + +G+ + V+ T + +++ + + E Sbjct: 154 VRLFNKSAERIIGYKK-EEAIGKYILE-------VIPTSKLLRIIRTKQIEV-NYELTLE 204 Query: 92 NCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLED 151 N ++ P++ + ++ + I+ + L E+ Sbjct: 205 NGKKIITTRIPILKEG--------------------GEVQGAFAIFKDITEVV--DLAEE 242 Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT 211 I + +I++ ++ + VVD++ R +N K G+ + +IIGKP + Sbjct: 243 VTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVE 302 Query: 212 FESNFTHGHMQHI----------------------VSWDDKSELIIGQLHNIQGRQLFLM 249 ES V D + +G + ++ Q Sbjct: 303 GESMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTN 362 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 +++ + + +VG A +P++V++ GESGTGKE+ Sbjct: 363 ELNRARQII--RTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELF 420 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A AIH S R+ F+ +NCAAI E LLESELFGY +GAF+GA GK G + AN G++ Sbjct: 421 AHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSI 480 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG++ QAKLLR ++ +EI+ +G + I +++R+I+AT+ NL + I EGKFRED Sbjct: 481 FLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFRED 540 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLN IPI +P LR+R+ DI + + + G G+ + L+ + WPGN Sbjct: 541 LYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAILYLQSYEWPGN 600 Query: 490 LRELSNLMEYLVNVVPSGEV-IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 +REL N++ + + E ID LPP EQ + + + + Sbjct: 601 VRELENILGRAIIFMNYNETYIDVHHLPP----LHNEEQVESKQSHLLPELEEKPLEHLV 656 Query: 549 EEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKY 587 E E +I E L R +K Q A LGI + LY K++KY Sbjct: 657 TEFEGNIIHEYLERFDGNKTQTAKALGISVRNLYYKLEKY 696 Score = 67.1 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 69/193 (35%), Gaps = 16/193 (8%) Query: 108 RCVGVI-SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQG---PGDNISKIFA 163 + VI + + + ++ I+ I E +G + ++ Sbjct: 76 MHIDVIFDMTGEDDVHKVLLEKKKKDTLLIPGDIAKIVTGLAHEKEGLIGRLEEQTQQGE 135 Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE----SNFTHG 219 ++++ G++V+D E +V+ N++A + +G + IGK I T + Sbjct: 136 LILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRTKQI 195 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPH--------IEQ 271 + + ++ ++ ++I ++ ++ AF V + +E +E Sbjct: 196 EVNYELTLENGKKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEVTDLKEIQTLLEA 255 Query: 272 LVGECRVMRQLKR 284 ++ + Sbjct: 256 IINSSEEAISVVD 268 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 160/517 (30%), Positives = 249/517 (48%), Gaps = 43/517 (8%) Query: 102 PVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 P+ + +G S + ++ + N+ +R IS +L+ +++ Sbjct: 189 PLPVNKLVIGDRSFLPYRNDVVQD--GNVIGSVLVLREISEF--EELVRQSQYTQKLNRE 244 Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----------------- 204 + ++ G+ V D + +N+ + GV +G+ Sbjct: 245 LDAIFESSFDGLYVTDGQAITLRLNKGFERITGVTAAECVGRHMADLVKEGKFSRSGTLL 304 Query: 205 -------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 + + N I + L++ + +I Q Sbjct: 305 ALEKKERVTISLVAATGNEVLVTSNPIFDEEGNIILVVTNVRDITELNELQRKLEQVEGL 364 Query: 258 FSVANAPDEP----HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 + + E QLV M++L L+ R+ S++++ GESG GKE++A I Sbjct: 365 TQLYRSQLEQIKLQTSRQLVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKELIAEII 424 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H S R++ P I +NC AIPE LLESELFGY GAFTGAS +GK GL + A G LFLDE Sbjct: 425 HSSSNRKDGPLIKVNCGAIPENLLESELFGYEAGAFTGASKSGKIGLFELAQGGILFLDE 484 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG++PL LQ KLLR ++ +EIL +G PI VD+RI++ TN+NL + IA +FR DL+YR Sbjct: 485 IGELPLNLQVKLLRFLQDKEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFRLDLYYR 544 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNVIPI +PPLRER ED+ +L +YFL++ + + V+++L ++ WPGN+REL Sbjct: 545 LNVIPIFVPPLRERPEDVPVLANYFLNVFNNKYQMN-KRLHKSVIDVLMEYHWPGNVREL 603 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 NLME +V V +I LP + V + A+E E+ Sbjct: 604 ENLMERMV-VTSINNIISMQDLPASFK---------VPRLKLDSEQDLLPLRQAVENTER 653 Query: 554 QMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 +++ A +R S QVA L + +T+ RK KY + Sbjct: 654 ELLEAAFARFRSSYQVATALQVNQSTVIRKAAKYGIK 690 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 244/474 (51%), Gaps = 39/474 (8%) Query: 142 TIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII 201 ++K+ + + N+ KI+ +++ + + + +VD+E V F N+ + L + I Sbjct: 2 DSELAKIFKAKDTSCNVCKIYEYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAI 61 Query: 202 GKPI-------RFRPLTFESNFTHGHMQHIVSWDDKSELI--------IGQLHNIQGR-- 244 GK + R + ++Q+I + + I +G + I R Sbjct: 62 GKHVTEIIENTRLHVVISTEKPEIDYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDV 121 Query: 245 -------QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 + +A +++ + ++G + + +KRL ++A + ++V+ Sbjct: 122 DEVKSLAKKLQVAENKAKKFENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVL 181 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 + GE+G GKE+ A AIH S N PF++INCAAIP+ LLESELFGY +GAFTGA NGK Sbjct: 182 IQGETGVGKELFAHAIHNNSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGK 241 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A+ GT+FLDEIGDMPL +Q+KLLR ++ R+ +G + +VD+R+I+ATN N+ Sbjct: 242 IGKFELADGGTIFLDEIGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNI 301 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT-RRLGSVYPGIAPD 476 + +FR DLFYRLN I + +PPLRER EDI L+V L G + Sbjct: 302 EDKVRNNEFRADLFYRLNTISLIIPPLRERYEDISLIVDKSLKNLNSSEYG--NKRFSSQ 359 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 ++ L + WPGN+REL N++E L +V ++++ + L + E+ T E Sbjct: 360 AMQTLTMYDWPGNIRELLNVVERLFFLV-DSDLVEENHVKQALSGINSEERKSNTNALED 418 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 + L EK I AL +K Q A LGI TLY+K+KK + Sbjct: 419 QIHL----------TEKDAIINALESCNGNKAQAAKLLGIHRTTLYQKMKKLNM 462 Score = 41.6 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 6 TQSVLMQI---QPTIQRFARMLASVLQLE---VEIVDENLCRVAGTGAYGKFLGRQLSGN 59 S L +I + T ++ +L + + +VD V Y +FL Sbjct: 1 MDSELAKIFKAKDTSCNVCKIYEYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEA 60 Query: 60 -SRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAV 118 + + ++E VV + + + K RE PV + + +G I I+ Sbjct: 61 IGKHVTEIIENTRLHVVISTEKPEIDYLQNIKG--REAIVQRIPVFMDGKLLGAIGKISF 118 Query: 119 THEQQEHISDNLREFSD 135 + + ++ Sbjct: 119 RDVDEVKSLAKKLQVAE 135 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 152/578 (26%), Positives = 284/578 (49%), Gaps = 24/578 (4%) Query: 34 IVDENLCRVAGTGAYGKFLGRQLSGNSRLLR-----HVLETKTEKVVTQSRFDPLCEGCD 88 + D+N ++ G K + +S + + V + + + Sbjct: 112 LFDKNGVLLSHEGEKIKLISADYPESSIVGQVWSEATVGTCAHVLSMHLKKPVYIVGPEH 171 Query: 89 SKENCREKAFLGTPV-ILQDRCVGVISLIAVTHEQQEHISDNLREF-SDYVRHISTIFVS 146 + P+ + +G + + H S L + + ++ + Sbjct: 172 YCTVFQNSCTSAAPLTNEDNEIIGYLVVSYHIDFPLSHDSYYLSTYPLGLITAMAVAVEN 231 Query: 147 KLL--EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 KL + + + ++ +++G+++ D+ ++ +N+ + + IIG+ Sbjct: 232 KLRFTKSYQLLKSAHHMQEVILSVIEEGIIITDNRGKIITINKEVVNIFNTAEEEIIGRT 291 Query: 205 I------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR----QLFLMAFHQS 254 I + + + DKS L++ + + G + + + Sbjct: 292 IDRFLGPQIGEAVRNNETVDIEEAICSNNHDKSYLVLIRPLDKHGNYPNGAVLRVNPMEI 351 Query: 255 HTSF--SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + + A ++++G+ + +++ L R + S ++++ GESGTGKE+ A+A Sbjct: 352 INALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSNENILLTGESGTGKELFAQA 411 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH R PFIA+NCAA+P +L+ESELFGY G+FTGA G+ G I+ A+ GTLFLD Sbjct: 412 IHNA-HRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGAERRGRAGKIELAHGGTLFLD 470 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGDMPL +QA LLR +E ++++ IG + +VD R+++ATN++L + E FR DLF+ Sbjct: 471 EIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAATNKDLERMSHENLFRSDLFF 530 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RL+++ I LPPLR+R D+E+L +YF+ + ++ P I+ + +E+L+ + WPGN+R+ Sbjct: 531 RLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLISEEALEVLKSYGWPGNVRQ 590 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N + Y VN+ G++I LP +L ++ + + S ++ ME Sbjct: 591 LENSVIYAVNL-AQGDLIQCRHLPESLYAASSSPAENYRDPPGMTGSYTLENIYKIDVME 649 Query: 553 KQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 K +I AL + N+ + ++ LG+ +TLYRK K+ + Sbjct: 650 KILIENALYKTRNNITKASELLGMAKSTLYRKAKELNI 687 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 162/581 (27%), Positives = 253/581 (43%), Gaps = 49/581 (8%) Query: 32 VEIVDENLCRVAGTGA--YGKFLGRQLSGNSR--LLRHVLETKTEKVVTQSRFDPLCEGC 87 V +VD + G+ + R V T + + L + Sbjct: 76 VAVVDGEGYILHMFGSDNIKAKFAERNCAPGYRWTERDVGTTAISLCLERRIAVQLNDKD 135 Query: 88 DSKENCREKAFLGTPVILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVS 146 + PV G++ + + H + + V Sbjct: 136 HYCQRAHGFTSSAAPVFGHAGNLQGILVVSGNSQLVHPHTLCMISSAARSVER-----QL 190 Query: 147 KLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR 206 ++L + ++++ G++V+D + + VN+ + L + ++ G+ + Sbjct: 191 RILRRNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQEVS 248 Query: 207 FRP---------------LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAF 251 Q+I ++ G + F Sbjct: 249 VLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQSMLGVVLEFEPID 308 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + ++A E ++G R+ + + R A S S+V++ GE+GTGKE+ A+ Sbjct: 309 SVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKELFAQ 368 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S RR+ PF+ INC AIP +LLESELFGYV GAFTGA G+ G + A+ GT+ L Sbjct: 369 AIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGTILL 428 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMP +Q KLLR ++ E+ IGA P VD RII+ T+ +L + +A G+FREDL+ Sbjct: 429 DEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFREDLY 488 Query: 432 YRLNVIPITLPPLRER-QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 YRLNV+PI +P LRER ++DI L +FL P + V+ L H WPGN+ Sbjct: 489 YRLNVLPIVIPALRERGRDDILALTEFFLSR----NRVTPPQLTVGAVKALENHPWPGNV 544 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N ++ +++ E ID+ L A + LEE Sbjct: 545 RELENTIQRALHLCEENE-IDAACL---------------GVPETAAAASSSTPRGTLEE 588 Query: 551 MEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 +E+ I + L + + A LGI ATLYRK+K+Y L Sbjct: 589 IERLAIEQTLEDTKGNMAETAKTLGISRATLYRKVKRYSLE 629 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 236/473 (49%), Gaps = 39/473 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 + P + +++N +G+++VD + ++ ++ +G+ Sbjct: 1 MSQSRKKSAAPRKIPQDLLDALLNNPYEGLILVDAQGIIRHMSSANEGIYPFTPQESVGR 60 Query: 204 PIRFRPLTFESNFTHGHMQHIVSWD---DKSELII-----------------------GQ 237 I + T + + D ++ G+ Sbjct: 61 HIHDVSPKSRMDRTIRTGKAEIGRSMILDDKTRVVARFPLSKDGKVIGAAGKLLFMDPGK 120 Query: 238 LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVM 297 + + R L + + ++ ++G+ + Q KRL + A + S V+ Sbjct: 121 MKELYERITHLERRLEKYEDELAQIYRTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVL 180 Query: 298 VVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGK 357 ++GESGTGKE+ A AIH LS R + + +NCAAIP +LLE+ELFGY +GAFTGA GK Sbjct: 181 IMGESGTGKELFAHAIHGLSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGK 240 Query: 358 TGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNL 417 G + A+ GT+FLDEIGDMPL +Q K+LR ++ RE+ +G++ P +VD R+I ATN++L Sbjct: 241 AGKFELAHGGTIFLDEIGDMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDL 300 Query: 418 AQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDV 477 + + +G FR+DL+YR+NV+ + LPPLR+ ++DI L +F + R P I P V Sbjct: 301 PKLMRQGLFRQDLYYRINVMTLKLPPLRDCRDDIFPLFQHFSRILGRE--KTPPKILPGV 358 Query: 478 VEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAH 537 EIL K+ WPGN+REL N+ E + V + LP EV Sbjct: 359 KEILEKYSWPGNVRELRNVTERALIVCRDN-TVSPADLPD----------LSQQEVLPQV 407 Query: 538 LSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 + + +++ EK++I +AL + +S+ + A LGI LY+K+KK+ + Sbjct: 408 IEEKASLKALMDQAEKKIIEQALVQASSRAEAARNLGIHRTGLYQKMKKHGIE 460 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 161/607 (26%), Positives = 288/607 (47%), Gaps = 44/607 (7%) Query: 12 QIQPTIQRFARMLASVLQLEVEIV---DENLC--RVAGTGAYGKFLGR-QLSGNSRLLRH 65 + T + +L I+ DEN + G+ + + + +S L Sbjct: 93 DLVETASNYIHNFHEILNYSNFIMVLTDENGVVLLIEGSKKEIEAFNKLNIRLSSLLNEK 152 Query: 66 VLETK-TEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQ-DRCVGVISLIA-VTHEQ 122 ++ T + + + ++ TP+ +G + ++ + + Sbjct: 153 IIGTSAHTLCIRHRKPIQFIGPYNYSMILQDNISSATPIFNDHGSVIGTLVVVQMLARKD 212 Query: 123 QEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRV 182 ++I + + + + + +L + ++ + +D GV+ V++ + Sbjct: 213 MQNIQAHSLGWVMAMGYAIENLL-ELKKQNNSMTLMNGTLEATLSLIDDGVITVNENCYI 271 Query: 183 QFVNQTALKTL-GVVQNNIIGKPIR---------FRPLTFESNFTHGHMQHIVSWDDKSE 232 +N+ + L Q IIG+ + + + I + Sbjct: 272 SHINKEGINILASNPQEKIIGRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRDT 331 Query: 233 LIIGQLHNIQG---------RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLK 283 + + I + + + P E + G+ + + Sbjct: 332 QYLLNIRPIADGQGKYNSGAVIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSLAKSI 391 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 ++ +A + +V+++GESGTGKE+ A++IH S + + PF+A+NCA++P L+ESELFG Sbjct: 392 QIAQNVARTGYNVLLIGESGTGKELFAQSIHN-SYKADGPFVAVNCASLPRNLIESELFG 450 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y G FTGA NG+ G I+ AN GTLFLDEIGDMPL +Q LLR +E + + +G S I Sbjct: 451 YEGGTFTGADRNGRPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSRGI 510 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 VD R+I+ATN+NL+ + E FREDL++RL++ IT+PPLRER D+ LL YF+ + Sbjct: 511 PVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFIEDIS 570 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNG 523 ++L S P ++P + ++++ WPGN+R+L N M Y VN+ +G VI+ + LP + +N Sbjct: 571 KKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAMVYGVNMSTNG-VIELSNLPDEMTSN- 628 Query: 524 TTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYR 582 + + + L E+EK++I EALS+ + + + LGIG T+YR Sbjct: 629 -----------DYFRTKVNTRKLTLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYR 677 Query: 583 KIKKYEL 589 K+K+Y + Sbjct: 678 KLKEYGI 684 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 158/472 (33%), Positives = 242/472 (51%), Gaps = 38/472 (8%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP----- 204 + K ++ + V+D + + +N+ GV N++GK Sbjct: 90 NELNELKEQVKELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENLLGKNVADLE 149 Query: 205 -------------------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 I T I + + ++ +I Sbjct: 150 REGYYNPSVSRMVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVVNSRDISELL 209 Query: 246 LFLMAFH------QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 +S+ + + + ++L+ M+++ ++ ++A S+V+++ Sbjct: 210 NLRKQLEDTEQLVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVAQVDSTVLIM 269 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GESG GK V+A +H+LS R PFI INC AIPE LLESELFGY GAFTGA GK G Sbjct: 270 GESGVGKGVIASRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFTGARKEGKKG 329 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 L++ AN GT+FLDEI ++PL LQ KLL+ I+ ++++ +G S I VDIR ++ATN+++ + Sbjct: 330 LLELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQR 389 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 +AEG FREDL+YRLNVIP+ +PPLR RQEDI +L+ YFL + P+ +E Sbjct: 390 MVAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKN-KKFTPEAIE 448 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ILR + WPGN+REL NL+E L+ V G I + LP + + + + + Sbjct: 449 ILRNYNWPGNVRELENLVERLL-VTKEGNEITVSHLPEYIFEGKSRFPNRIYVLDICP-- 505 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 A+EEMEKQ+ A +R + +VAD L I +T+ RKI+KY LL+ Sbjct: 506 ----LKEAVEEMEKQLFSMAYNRLKNTYKVADALAINQSTVVRKIQKYNLLS 553 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 161/576 (27%), Positives = 261/576 (45%), Gaps = 58/576 (10%) Query: 35 VDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCR 94 + LCR+ G R++ G + L+ + + V + + G K Sbjct: 47 FNPALCRIVGYPP------REMKGMG--YKTYLDKENAQQVFRVFNEVYLTGQPKKAFNY 98 Query: 95 EKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGP 154 E + V IS+ + + + +R ++ + + Sbjct: 99 EITR-----KDGSKSVVEISIT-----LRRNKEGEPDGYRCIMRDVTDR-----RKAEME 143 Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP----- 209 + ++ ++ VD + +V N+ A G+ N+ P P Sbjct: 144 LAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNVKNNPFALCPTDCCQ 203 Query: 210 -------LTFESNFTHGHMQ----HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSF 258 T + Q H K L L + G L + + T Sbjct: 204 ACRDVLAETLKRKTAIREFQVECNHKQRPQQKVSLSSAPLESQDGEFLGAVLVIRDITRL 263 Query: 259 --SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 + ++G M+ + +L+ +A ++V++ GESGTGKE+VA+A+H Sbjct: 264 VDLERELQERNQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHT 323 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 R KPF+++NC+A+ E LLESELFG+VKGAFTGA + + G QAA+TGTL LDEIGD Sbjct: 324 GSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQ-GRFQAAHTGTLLLDEIGD 382 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 + +Q KLLR ++ RE +G PI+VD+R+I+ TNQ+L + + G+FREDL+YRLNV Sbjct: 383 ISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNV 442 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 + I LPPLRER+EDI LL +F ++ PG++ V+ + WPGN+REL + Sbjct: 443 MEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWPGNVRELEHS 502 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E + ++I +P + + + + A E I Sbjct: 503 IERATVLC-RDKMISLEHIPGEIAEAYSLSGPRLKKQPAAD--------------EPNEI 547 Query: 557 REALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 +AL R +K + A LG+ T+YRKI+KY + + Sbjct: 548 IDALKRTGWNKAKAARLLGVSRKTIYRKIEKYGIQS 583 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 147/465 (31%), Positives = 237/465 (50%), Gaps = 35/465 (7%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN----- 199 K + N A + +++ G+L VD V NQ A + G +++ Sbjct: 123 ALKYKQAIDREANTRTNLAAIFESVKDGLLSVDASGCVTDFNQAASRLCGWSKDDRGEKI 182 Query: 200 -IIGKPI---------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM 249 + P R +H+ L L N +G + Sbjct: 183 DALSMPCAGTCRDLLTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPLQNKEGDVFGAV 242 Query: 250 AFHQSHTSF--SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 + T + +++ M+Q+ LI +A PS+V+++GESGTGKE Sbjct: 243 MVVRDETRLDDLERSLNKRQSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKE 302 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 +VA A+H R+N+P + +NCAA+ + LLESELFG+VKG+FTGA + G Q A+ G Sbjct: 303 LVAEALHLSGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDH-VGRFQKADGG 361 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIGD+ +Q +LLR ++ +E+ IG S+P++VD+RI++ATNQ+L + + G+FR Sbjct: 362 TIFLDEIGDISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFR 421 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 +DL+YRL VI + LPPLRER+EDI +V +F+ + LG G+ +V+ ++ + WP Sbjct: 422 QDLYYRLKVITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWP 481 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+R+L + +E+++ + +P +L + Sbjct: 482 GNVRQLEHAIEHILIHCTE-PLASLAHVPEEILQGEQAVGKYCADS-------------- 526 Query: 548 LEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYELLN 591 EE E+Q I AL + + +K + A LGI TLYRKI+K+ L+ Sbjct: 527 -EEQEQQQILAALDKTDWNKAKAARLLGIDRKTLYRKIEKFGLVE 570 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 141/448 (31%), Positives = 230/448 (51%), Gaps = 33/448 (7%) Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN-------------NIIGKPIRFRP 209 ++D++++GV VD +Q +N A K G + + G+ R Sbjct: 11 NIVLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPIRQ 70 Query: 210 LTFESNFTHGHMQHIVSWDDKSELI---IGQLHNIQGRQLFLMAFHQSHTSFSV--ANAP 264 +I++ ++ + LH+ +GR + + Q + Sbjct: 71 TLTTGEPVVNRRTYILNAKEECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCRELK 130 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + +VG M+ + + +A S S+V++ GESGTGKE+ AR +H S R F Sbjct: 131 SHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRCRGQF 190 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 + +NCAA+P+ LLESE FGY GAFT A ++G + A+ G++FLDEIGD+ LQ + Sbjct: 191 VPVNCAALPDTLLESEFFGYEPGAFTDA-KRSRSGRFELAHCGSIFLDEIGDISQALQVR 249 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ R + P+G+ +D+R+I ATNQNL + +G FR DL+YR+ VI + +PPL Sbjct: 250 LLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRIPPL 309 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER++DI LL+ +F++ + G+ V+ L ++ +PGN+REL N++E Sbjct: 310 RERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAFVFC 369 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 G +I+ LP L + ++ L D G L+EME+ +I AL + Sbjct: 370 -QGALIEMRHLPSELRDT------------QSRNLLGDKQGLTLKEMERALITRALQINK 416 Query: 565 SKKQ-VADELGIGIATLYRKIKKYELLN 591 ++ A LGI +TLYRK+K E+ + Sbjct: 417 GHRKNSARTLGINPSTLYRKMKALEIDS 444 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 153/463 (33%), Positives = 234/463 (50%), Gaps = 36/463 (7%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----------- 205 N ++ + + +V+++ V + N A++T + + I+ K I Sbjct: 3 NELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLMV 62 Query: 206 --------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM-------- 249 R + + D +IG + + + Sbjct: 63 LKVLRTKARITDQYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVST 122 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + + + + +E +L G+ R +R ++ ++ A + + +++GESGTGKE+ Sbjct: 123 SIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEIC 182 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 ARAIH+ S R+N PFI +NC +IP L ESELFGY G FTGA GK G I+ A+ GTL Sbjct: 183 ARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTL 242 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG++PL +Q KLLR ++ + I IG +S ++++R I+ATNQ++ + + E FR D Sbjct: 243 FLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSD 302 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNVI IT+PPLR R +DI +L YFL + P +APD + L+ + WPGN Sbjct: 303 LYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPGN 362 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL NLME +V + ID L N T S E Sbjct: 363 VRELRNLMERMVIL-SEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEK-------E 414 Query: 550 EMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELLN 591 MEKQ+I +AL + +K A ELGI TLY+K+KK+ + + Sbjct: 415 NMEKQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGIGS 457 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 236/467 (50%), Gaps = 21/467 (4%) Query: 141 STIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI 200 + ++++ Q ++ T++ + GV+ +D+ ++ +N +A + + Sbjct: 180 AIEEAQRIIKVQDKEKKSAEQLRTILSFIHDGVIAIDNTGKITVINPSAESIFKLKNTQV 239 Query: 201 IGKPIRFR---------------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 IGK I+ + N G + + + I+G + + Sbjct: 240 IGKNIKQVIPNTKMLDVLKHGKAEIEQLQNTPSGMVVTNRVPIEINGEIMGVVATFKEAG 299 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 + T + E ++ MR++ R A + +V++ ESG G Sbjct: 300 RIQQTEQKIRTKLYSQGLYAKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCG 359 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE+ A++IH+ S R PF+AINC+A+P QLLESELFGYV+GAFTGA GK GLI+ A+ Sbjct: 360 KELFAQSIHQASSRCRGPFVAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAH 419 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 GTLFLDEIGDM L LQA+LLR +E R+++ +GA + VDIRI++ATN L Q + G+ Sbjct: 420 GGTLFLDEIGDMELTLQARLLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQ 479 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FR DLF+RLNV+ +++PPLR R+EDI L YFL + G + +IL ++ Sbjct: 480 FRMDLFHRLNVLNLSIPPLRHRREDIIPLAEYFLAEFANKYGQRPIELTAAAKDILLRYS 539 Query: 486 WPGNLRELSNLMEYLVNVVPSGE---VIDSTLL--PPNLLNNGTTEQSDVTEVSEAHLSL 540 WPGN+REL N+ME + V + I L N+ + A Sbjct: 540 WPGNVRELRNIMERISLVYEEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPE 599 Query: 541 DDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586 ++ +M++Q+ L+ +K + A +LGI ATL R +++ Sbjct: 600 RFLLPQSIRDMKRQLAISTLAACGGNKSKAAKQLGITRATLDRLLRQ 646 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 223/428 (52%), Gaps = 8/428 (1%) Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWD 228 Q ++V + F+N+T + L I PI+F + V+ + Sbjct: 87 SGQPMVVSNVSASPIFLNRTRSRDLQKDTIAFICVPIKFEDEVLGALSVDRVFADAVTLE 146 Query: 229 DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHI------EQLVGECRVMRQL 282 + ++ I + N + VG MR + Sbjct: 147 EDERILTIIASMIAHAARARQNVMDERVAAIEENMRLRNALSAPLRPHGFVGNSDAMRLV 206 Query: 283 KRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELF 342 IS++APS ++V++ GESGTGKE+ A AIH R PFI++NCAA+PE L+ESELF Sbjct: 207 YEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISLNCAALPENLIESELF 266 Query: 343 GYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSP 402 G+ KGAFTGA + + G + A+ GTLFLDE+G++ L+ QAKLLR ++ R +G + Sbjct: 267 GHEKGAFTGA-SGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTES 325 Query: 403 IQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLH 462 + VD+RII+ATN++LA+ + EG FR DL+YRLNV PI +PPLRERQ DI+ L YF+ + Sbjct: 326 LSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKY 385 Query: 463 TRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNN 522 G I+ V+++L+++ WPGN+REL N+ME V +V +I LP L + Sbjct: 386 AAANGRSGIRISLAVMDMLQRYTWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHST 445 Query: 523 GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLY 581 + + L+E+E+ I +AL+RH A LG+ + Sbjct: 446 HCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALARHKGHMGHAAQALGLTERVMA 505 Query: 582 RKIKKYEL 589 ++KK+ + Sbjct: 506 LRMKKHGI 513 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 30/465 (6%) Query: 141 STIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI 200 + ++L Q + ++ T+I+++D G++ VD+ V +N+ A + L + Sbjct: 176 ALELSRQMLTIQRMEEANARRIETIINSVDYGIIAVDNAGAVTALNREARRLLALAHGAP 235 Query: 201 IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELII------------GQLHNIQGRQLFL 248 P+ L + +D EL+I G + +Q + F Sbjct: 236 DNHPL-LVKLRRHGQLGERLTGSVERLEDGRELVINYLPITIGGETAGAVATLQELRQFQ 294 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLV-GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKE 307 ++ + +L MR + R A +++++ GE+G GKE Sbjct: 295 DIERRTRQELARRGRLARHTFLELEETAAPAMRAVIDEARRFAAVDATILIQGETGVGKE 354 Query: 308 VVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTG 367 A AIH S RR PF+A+NCAAIP +LESELFGY +GAFTGA GK GL + A+ G Sbjct: 355 YFAHAIHAASPRRYGPFVAVNCAAIPATVLESELFGYAEGAFTGAKKGGKVGLFEQAHGG 414 Query: 368 TLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR 427 T+FLDEIG+M LQA+LLR ++ EI IG I VDIR+I+ATN++L +A G+FR Sbjct: 415 TIFLDEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPVDIRVIAATNRDLRAMVAAGRFR 474 Query: 428 EDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWP 487 EDL+YRL+V+ + +PPLR R++DI L V F+ + GI + + +L + WP Sbjct: 475 EDLYYRLDVLALEVPPLRARKQDIPLFVRKFIDEFNHKYRRAVQGIDDEGLALLAAYDWP 534 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N+++ L+ + G VI +T + L + +A + Sbjct: 535 GNVRELHNVVDRLMALAA-GPVITATEVRQCLERRLRSSDRPAAPGMKAAEAAA------ 587 Query: 548 LEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELLN 591 IR+AL+R + +K+Q A LGIG +TL+RK+++ + + Sbjct: 588 --------IRDALARANGNKQQAARLLGIGRSTLWRKLRELGIAD 624 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 154/466 (33%), Positives = 236/466 (50%), Gaps = 38/466 (8%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----- 205 + ++ + D++ G LV D++ + N+ LGV + IG+ Sbjct: 7 RIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHCTESVV 66 Query: 206 --RFRPLTFESNFTHGHMQHIVSWDDKSELI-------------------IGQLHNIQGR 244 R + +I+ + I + L + Sbjct: 67 NSRMHIVARTGKPEINQSHNIIGKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDLSRLASE 126 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 L + + + + + + ++G +++LK R A + V++ GESGT Sbjct: 127 LKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLICGESGT 186 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+ A+AIH S R+ PF+ INCAAIP+ LLE+ELFGY KGAFTGA ++GK G + A Sbjct: 187 GKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKPGKFELA 246 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GTLFLDE+GD+PL +Q KLLRA+E RE +G + I+ D+RII+ATNQ+L Q +A+G Sbjct: 247 HQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLDQMMADG 306 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FR+DLFYRLNVIPI +PPLR+R+ DI Y L + LR H Sbjct: 307 RFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQAALRNH 366 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 +WPGN+RELSN++E ++ + +G I + LP L + + + + Sbjct: 367 QWPGNVRELSNVLERTLSAL-NGRTIGLSDLPFYLHQDRKPLSNGGSS----------SL 415 Query: 545 GTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 +E++ I AL + +K + A+ LGI LY+KIKKY + Sbjct: 416 KAVQARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAI 461 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 167/550 (30%), Positives = 254/550 (46%), Gaps = 28/550 (5%) Query: 51 FLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL--QDR 108 LG S S + T + + + + + PV Sbjct: 128 TLGADWSEESAGTNAI---GTAIYLQKP--IQIFSYEHYAQGAHDWVCSAAPVHDPCTGE 182 Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDN 168 +G+I A Q H + R + ++ + + Sbjct: 183 LLGIIDFTAPHEYAQPHTLEMARIIALNLQTEYSRISLDTKNYLYEEYAKVRNRWP---- 238 Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWD 228 + +L+ D R+ A L +Q+ G R + ++ G + H + Sbjct: 239 -GEALLLFDRTLRIIAETPEARNFLCNLQHQFPG--CSPRAVIRDALLACGGVTHTIELL 295 Query: 229 DKSELIIGQLHNIQGRQ-----LFLMAFHQSHTSFSVANAPD---EPHIEQLVGECRVMR 280 D + G+Q L HT ++G RV++ Sbjct: 296 DPKYKLTSMPVLRNGQQVGCIILLARDSQSRHTRGHRVTDNAINVNHPWRTIIGSSRVIQ 355 Query: 281 QLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340 + + +A + + V++ GESGTGKE+ ARAIH+ S R +PF+A+N AA+P +L+ SE Sbjct: 356 RAIQRAQIVAATNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVNIAALPRELIASE 415 Query: 341 LFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS 400 LFGY GAFTGA GK G + AN GTLFLDEIGDMPL LQ LLR ++ ++I +G++ Sbjct: 416 LFGYEPGAFTGAHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQEKKITRLGST 475 Query: 401 SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460 + VD+RII+ATNQNLAQ +A G+FR DLFYRLNV+ I LPPLR+R D+ + +FL Sbjct: 476 TSEAVDVRIIAATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADVPSIAQHFLS 535 Query: 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLL 520 L ++ P+V+ + +++ WPGN+REL N++EY V + I LP L Sbjct: 536 LFAQKHDKSVERFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDS-ITVNDLPDYLT 594 Query: 521 NNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIAT 579 + EVS+ + A+E E+++I L + + QVA +L T Sbjct: 595 RSIFKN----LEVSDKPIYDTIEMSDAIENEERRLIAYWLEKTNGNISQVARQLRRSRTT 650 Query: 580 LYRKIKKYEL 589 +YRKIK Y L Sbjct: 651 IYRKIKHYGL 660 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 167/588 (28%), Positives = 274/588 (46%), Gaps = 62/588 (10%) Query: 38 NLCRVAGTG--AYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCRE 95 ++ RV G +G L+ ++ + C G Sbjct: 129 DMVRVPTEGVAWNESTIGTCAHTICMELKKPIQI--------LGPEHYCVG------LHN 174 Query: 96 KAFLGTPVILQ-DRCVGVISLIAVTH---------EQQEHISDNLREFSDYVR------- 138 P++ + + + I L H + + + Sbjct: 175 IVGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSHTLGLITALAKAIETQLKLNQ 234 Query: 139 --HISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVV 196 + T S L++ + T ++ MD+G++ +D R+ +N+ + + Sbjct: 235 TNELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITLDPSGRIINMNREVTRIFKIR 294 Query: 197 QNNIIGKPIRFRPLTF-------ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLM 249 K I T + + +++V +D+ II + + + Sbjct: 295 PEEKSHKNINEFLHTHSQVAALITAGKSVDIEENLVIGNDEQPYIINIRPVLNKKTQQIE 354 Query: 250 AFHQSHTSFSVANAPD--------EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGE 301 A NA E +VGE +++ + R A S +V+++GE Sbjct: 355 AAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIKKAVSIARRFATSSENVLLMGE 414 Query: 302 SGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLI 361 SGTGKE+ A+AIH S PF+A+NCAA+P +L+ESELFGY G+FTGA G+ G I Sbjct: 415 SGTGKELFAQAIHNHSC-PLGPFMAVNCAAMPRELIESELFGYEGGSFTGAERTGRPGKI 473 Query: 362 QAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421 + A+ GTLFLDEIGDMPL LQA LLRA+E ++I+ IG +VD R+I+ATN+NL + + Sbjct: 474 ELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGRRYKKVDFRLIAATNKNLFKMV 533 Query: 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEIL 481 E ++REDL++RL+V+ IT+P LR R+ DI++L YF+ + ++ G P I + + Sbjct: 534 KERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIKNYCQKQGWKTPKITKGALRKI 593 Query: 482 RKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD 541 +++ WPGN+R+L N + Y VN +VID+ LP +L + + Q + +++ Sbjct: 594 QEYEWPGNVRQLQNALIYAVN-SAHNDVIDTDSLPQYILLDSSPFQDEPNFTTDS----- 647 Query: 542 DAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYE 588 +LE +EK I+ AL + A LGI +TLYRK+K Y Sbjct: 648 ----LSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKDYG 691 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 152/460 (33%), Positives = 237/460 (51%), Gaps = 39/460 (8%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI----- 205 +S T++D++ GV VD + R+ N+ A + GV ++ IG+P Sbjct: 69 QSAKQHILSPQTETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFR 128 Query: 206 ---------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA 250 +P+ +S + + L+ + G Sbjct: 129 ANVCESTCVLKFTMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHTIGGVETFRD 188 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 T + + +V + M +L ++ +A S S+V++ GESGTGKE+++ Sbjct: 189 LSLVET--LRKEIDRQYRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLS 246 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 RA+H LS R PF+AINC A+P+ LLESELFG+V GAFT A N + G A GTLF Sbjct: 247 RAVHSLSSRAAGPFVAINCGALPDTLLESELFGHVAGAFTDARKN-RAGRFAQAEGGTLF 305 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGD+ LQ +LLR +E R P+G+S + ++RI++A+N++LAQ +AEG FR+DL Sbjct: 306 LDEIGDVSPALQVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDL 365 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YR+NV+ + LP L R+EDI LL +F+ + G++ + + + +H WPGN+ Sbjct: 366 YYRINVVKLELPTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNI 425 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++EY + G +I LP L + L D+GG +L + Sbjct: 426 RELENVIEYAFILC-RGGLIQPAFLPEYLHAHA--------------CVLPDSGGLSLRD 470 Query: 551 MEKQMIREALSRHNSKKQV-ADELGIGIATLYRKIKKYEL 589 E + IR+AL R+ ++ A ELGI TL RK+K+ + Sbjct: 471 NEARAIRDALDRNQWRRMATARELGIDKNTLRRKMKRLNI 510 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 177/618 (28%), Positives = 282/618 (45%), Gaps = 64/618 (10%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDEN---LCRVAGTGAYGKFLGRQLSGNSR--- 61 S+L++I+P + +L ++L + I D + +Y + LG + + Sbjct: 67 SLLVRIRPVM----ELLFAMLHCNISICDGKGFVFDLITPLKSYPRTLGTYIEEATCGNG 122 Query: 62 LLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHE 121 L L+ K + + + + P+++ +G I+ + Sbjct: 123 ALTIALQEKVPVRID--------GYEKYRVISHPYSSVCAPIVVNKELIGAINATSPFGA 174 Query: 122 QQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 + + + + + L D + + +ID ++ +D+ENR Sbjct: 175 LPQEALEVIIAAGKLIESLL------LERDGQNLAENFQPWRELIDCSSWALIFLDEENR 228 Query: 182 VQFVNQTALKTLGVVQNN-IIGKPIRFRPL---------TFESNFTHGHMQHIVSWDDKS 231 + N+ A + LG Q + +PI + +S + D Sbjct: 229 IAAANKVACQELGCGQEEQWLNRPIEEVLIDKRDSAYLTRDDSGQPKPPQKIRFKLHDSQ 288 Query: 232 ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE------------PHIEQ------LV 273 I + I+ L L P + + Sbjct: 289 GGAIRSMELIRKNSLELALGRYRRVLLLDPGLPAHGGPVNPEQPVSSYLLNNHSQEVEFL 348 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G+ +++K L+SR +P PSSV+++GE+GTGKEV+AR IH+LS R F+A+NC AIP Sbjct: 349 GKGEEWKKIKELVSRTSPFPSSVLLLGETGTGKEVLARTIHRLSQR-QGNFVAVNCGAIP 407 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +LL+SELFGYV GAFTGA + G G + A+ GTLFLDEIG+MP+ +Q LLR ++ R Sbjct: 408 RELLQSELFGYVGGAFTGARSGGSVGKFEHAHKGTLFLDEIGEMPMDMQVSLLRFLQERT 467 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + I ++ P VD+RII+ATN+N+ + +G FREDL+YRLNVI I +PPLRER+EDI + Sbjct: 468 VTKINSNYPKPVDVRIIAATNKNMYDLVGQGLFREDLYYRLNVIEINIPPLRERKEDIPM 527 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L +F+ ++ + I +E L +H WPGN+REL N+ME V + G+ I Sbjct: 528 LAQFFVAELCKQFNILPKKIDEATMETLDRHVWPGNVRELKNVMEKAVVMTA-GDTITPD 586 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADE 572 +LP + D+ G A E EK I L +H Q A Sbjct: 587 VLPKQIFQTLEPPS---------PQPADNPGTEAEELSEKDYILHMLEQHGGNVAQTAKA 637 Query: 573 LGIGIATLYRKIKKYELL 590 L I TLYR++ K+ + Sbjct: 638 LNIARNTLYRRLLKHNIQ 655 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 163/504 (32%), Positives = 267/504 (52%), Gaps = 26/504 (5%) Query: 104 ILQDRCVGVISLIAVTH----EQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 + D + ++S+ + ++ S N + +S I + + N Sbjct: 24 KIYDLNINIVSIEVFPKTVFIKIEDIYSHNKDLIKKKLYEVSGIIMVCEINLLEYEKNER 83 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTF 212 K+ +ID +D GV+ V+ ++ N K +++II K IR L Sbjct: 84 KLL-AIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDIIDKDIRTVLEDPLIIDLIK 142 Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQLHNIQ------GRQLFLMAFHQSHTSFSVANAPDE 266 I S + + + G + + SV + D+ Sbjct: 143 SGKDYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVSSITDIKKVIELASVVSKMDK 202 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 ++G + ++ +K ++ ++ S S+V++ GESGTGKE+ ARAI +LS R++K F+ Sbjct: 203 EAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGKELFARAIQRLSNRKDKRFVI 262 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 +NCAA+PE L+ESELFGYVKG+FTGA+ NGK GL + AN GT+FLDEIG++ ++LQAKLL Sbjct: 263 LNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANEGTIFLDEIGELSMVLQAKLL 322 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ + IG+ + +VD+RII+ATN+NL + + +G+FREDL+YRLNVIPI +P LRE Sbjct: 323 RVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEFREDLYYRLNVIPIFIPSLRE 382 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R EDI +V +F+ +L G+ D ++ L K+ WPGN+REL N++E +N+ Sbjct: 383 RMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNWPGNIRELQNVVERAMNLC-D 441 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G+++ L + + E + D +E EK+ I +AL ++ + Sbjct: 442 GKLLTKKHL-------MINSYINPISLDEVKEASDLKLKDIVEACEKEAIIKALKKNKTF 494 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 ++ A LG+ T+ KIKKY ++ Sbjct: 495 RKTAKVLGVSHTTIINKIKKYNIV 518 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 143/451 (31%), Positives = 229/451 (50%), Gaps = 18/451 (3%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL 210 P + ++D + GV+ +D R+ +N+ A + G ++ + + L Sbjct: 89 QTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAGEDVTERSLTSLRL 148 Query: 211 -------TFESNFTHGHMQHIVSWDDKSELIIGQ------LHNIQGRQLFLMAFHQSHTS 257 H + + + K + + + + I G + Sbjct: 149 PDHGLLDCLHGRELHDARRELATPLGKLQFFVTRTPIRDGVGRIIGAVEIARDMREIRKL 208 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 D + +VG + R+A + + + + GESGTGKE+ ARA+H S Sbjct: 209 ARTLVDADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRGESGTGKELFARAMHAES 268 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 GR+ PF+ INCAA+PEQLLESELFGY +GAFTG GK GL ++A GT+FLDEIGDM Sbjct: 269 GRK-GPFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGLFESARGGTVFLDEIGDM 327 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL QAK+LR ++ + + IG + + VD RII+ATN+ L + + +G+FR+DL+YR+NV+ Sbjct: 328 PLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERMVEDGRFRQDLYYRINVL 387 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 P+ +PPLRER+ DI LL ++FL R+G P + LR H WPGN+REL N++ Sbjct: 388 PMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALARLRSHEWPGNVRELKNVV 447 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E + G V+D + L ++ + + + D + EK+++ Sbjct: 448 ERAAIL-AGGAVVDDQFI---LFSHELGKGVFNAARTASAAGQGDTLKEQVANFEKKIVE 503 Query: 558 EALSRHNSKKQVADELGIGIATLYRKIKKYE 588 + + R S ++ A LGI L K++++ Sbjct: 504 DVVRRAPSIRKAAKILGISHTALLDKMRRHG 534 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 243/471 (51%), Gaps = 34/471 (7%) Query: 149 LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG-VVQNNIIGK---- 203 + + + K +I++ G+++ D E R+ NQ+ + G + +++GK Sbjct: 9 ITEVDEVRRLKKELDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVADLLGKTALE 68 Query: 204 ------------------PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245 P+ + + + + + ++ Sbjct: 69 LEKEGIILSQSKIILGKDPLTLKQNIRTGVELFITSKPAYDDRGRFLFYVATIRDMTELS 128 Query: 246 LFLMAFHQSHTS------FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 ++ + +++V R M+ + R+A + ++V++ Sbjct: 129 RLRQEVEETKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICERAIRVAQTDTNVLIS 188 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 G SG+GKE++A+ IH S R++ PF+ INC AIPE LLESELFGY KGAFTGA GK G Sbjct: 189 GPSGSGKEMIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYEKGAFTGAGRQGKIG 248 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 L++ A+ GT+ LDEIGD+ ++Q KLLRAI+ + I +G+++PI++++RII+ATN+NL + Sbjct: 249 LMEMADLGTILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKLNVRIIAATNKNLEK 308 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 + E FREDL+YRLNVIPI +PPLRER+E I L +FL ++ G+ ++P+V Sbjct: 309 MVEENLFREDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQKHGTD-KSLSPEVCA 367 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ++ WPGN+REL NL+E +V + +V+ LP N + + + + Sbjct: 368 CFEEYDWPGNVRELENLIERMVVISDE-KVLTPYWLP---RNVSSGQAPRSDMSPKQECT 423 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 + + A E E+ I ALS H S ++ A LG+ +T+ RK+K L Sbjct: 424 AEISLKQARESAERDAICRALSLHGSIRKAAKSLGVDHSTVVRKMKSLGLE 474 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 162/457 (35%), Positives = 243/457 (53%), Gaps = 40/457 (8%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 I ++ D +G LVVD +R+ + + + LGV + IGKP+ + Sbjct: 8 EIYELLEKAFDE-FKGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIPHSRMSE 66 Query: 217 THGHMQHIV---------------SWDDKSELIIG-----------QLHNIQGRQLFLMA 250 + + + E +IG ++ + GR +L A Sbjct: 67 VLKSGEPEIAQVWEVKGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDA 126 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + S +E ++G + ++K ++ IA + S++++ GE+GTGKE+ A Sbjct: 127 ELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFA 186 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 A+H S RR I +NCAAIP++LLESELFGY +GAFTGA GK G + AN GTLF Sbjct: 187 HALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLF 246 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG+MP LQAKLLR ++ EI IG + P+QVD+RI++ATN+NLA+ + +FREDL Sbjct: 247 LDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDL 306 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRLNVI + +PPLRER EDI LV +F+ RLG GI P+V E+ + + WPGN+ Sbjct: 307 YYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHWPGNV 366 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++E +NV+ VI + L ++ + S L Sbjct: 367 RELYNVLERTMNVIQRD-VIGLADINWFLPRVLSSSGRQTSRSS-----------NTLRN 414 Query: 551 MEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586 +E ++I L +K + A+ LGI +T+Y K+K+ Sbjct: 415 LEAKIIHRVLESCNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 144/506 (28%), Positives = 235/506 (46%), Gaps = 47/506 (9%) Query: 110 VGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNM 169 VG++ + ++ + + ++ + T K + + + F + N Sbjct: 60 VGMLEVDGDQYQVECGVLEDREALLLW----PTAAAVKFAPQMEQLEQMYQDFREIYRNS 115 Query: 170 DQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP------------------------I 205 G+ + D VN+ + GV + +IG+ I Sbjct: 116 FDGIFIADGTGTTLMVNEGCERNYGVPASEMIGRHVSEFQRSGLINPVIAMRVIESRQRI 175 Query: 206 RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP- 264 T ++ +I + ++ Sbjct: 176 SAVQETSIGKTIMVTGIPLLDDQGAVRKVIINSRDTTELIQLQEELARAQEKLHRFEMEV 235 Query: 265 -----DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 D P I L+ M+Q+ L ++A ++V++ GESG GKEV+ R IHK S Sbjct: 236 SQLRMDNPAIAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAH 295 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 PF+ INC AIP LLESELFGY GAFTGA GK G+I+ A+ GTLFLDEIG++PL Sbjct: 296 HAGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPL 355 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 LQ KLL+ ++ R + +G + PIQVD+R+++ATN++L + +FR DLFYRLNV+P+ Sbjct: 356 DLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPL 415 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 +PPLRER+EDI L+ ++L + ++ + L + WPGN+REL N++E Sbjct: 416 HVPPLRERREDILPLIQHYLDELNAQYDLD-KRLSEQALAALLDYDWPGNVRELRNMVER 474 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 LV P +I S LP L ++ ++ E+++++EA Sbjct: 475 LVVTAPE-SLIRSDSLPTLLRSSELESDLARLDIKARS-----------AHFERKIVKEA 522 Query: 560 LSRHNSKKQVADELGIGIATLYRKIK 585 + R+ + + A L + +T+ R++K Sbjct: 523 VERYGNTRAAAKHLQVSQSTVVRRLK 548 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 149/460 (32%), Positives = 235/460 (51%), Gaps = 31/460 (6%) Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFES 214 ++ I+ ++++M +G++ D ++R+ F+NQTA + G+ N IG+ I + Sbjct: 1 MQQLTTIYRDILESMAEGIIFADADDRLTFINQTAEEIRGIKAENFIGRTIFSVHSPNSA 60 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLH--------------------NIQGRQLFLMAFHQS 254 +Q + K + ++ + + Sbjct: 61 KRIKELLQKLRDGSIKQARRVIEVKGRYFENSYYPVSSPDGGYLGTLLISRDVTERQQLQ 120 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 H + S+ V M + + I +A S+V++ GESGTGKE+VA AIH Sbjct: 121 HENQSLKQRMACGSFGGFVSISSSMLPVFQTIGAVAGLESTVLITGESGTGKELVAAAIH 180 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 + S R + + +NCAA+PE L+ESELFGY +GAFTGA N + G + A+ T+FLDE+ Sbjct: 181 RNSARNERAMVTVNCAALPEHLVESELFGYQRGAFTGAVGNHR-GKFEQADKSTIFLDEV 239 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 GD+P QAKLLR ++ R + +G+ I+VD+RII+ATN+NL Q +A+G FREDL+YRL Sbjct: 240 GDLPANAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRL 299 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 NVI + +PPLRER+EDI + +FL + R+ GI +L + +PGN+REL Sbjct: 300 NVISLPVPPLRERREDILPMAEFFLKRFSERMERPQLGICEATRSVLLSYDYPGNVRELE 359 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD--------VTEVSEAHLSLDDAGGT 546 + +E V + P G I LP + ++ D + + Sbjct: 360 HGIERAVALCP-GSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLAN 418 Query: 547 ALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIK 585 A EE E+++I +AL R +K + A L I TL+ K+K Sbjct: 419 AREESERRLILDALVRTGGRKAEAAKLLNISRKTLWEKLK 458 >UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Clostridia RepID=B8G1B8_DESHD Length = 628 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 156/543 (28%), Positives = 255/543 (46%), Gaps = 41/543 (7%) Query: 53 GRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVI-LQDRCVG 111 G + G + L + D + C P+ LQ +G Sbjct: 118 GEDVKGT-NAIGTALIEGMPVTI--QGMDHY-VQENHFLTCS-----AAPIHGLQGEIIG 168 Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQ 171 VI + A Q + L +++ + + + L+ G ++ +D + Sbjct: 169 VIDISAEIGNQHCTLDIALVGARLIEQNLRHLTIERELKFYQQGSKLA------VDLLKD 222 Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 G L +D + VN T +G ++++IG+ + + + + D K Sbjct: 223 GCLSIDRHGMITQVNATGASLIGRKKDDLIGRHVTDVLGAPKGWVLNQDTLDLRHKDGKG 282 Query: 232 ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL--VGE-CRVMRQLKRLISR 288 ++ I + +++ L VG R++ + Sbjct: 283 HELVTHFQRISDNSGSSLGAVGVIQIIGQ-------NLDNLSWVGRTSLKSREILEKAHK 335 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 A + SV++ G++GTGKE++AR IH+LS R+N PFIA+NCAAIP LLESELFGY GA Sbjct: 336 AAQTDFSVLLQGQTGTGKEIIARMIHELSPRKNGPFIALNCAAIPNTLLESELFGYADGA 395 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTGA G+ G + A+ GT+FLDEIGDMPL Q LLR ++ + ++ IG + ++D+R Sbjct: 396 FTGARRGGQPGKFELAHGGTIFLDEIGDMPLNAQVALLRLLQEKALVRIGGKTLQKIDVR 455 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 +I+A++++L + FR DLFYRL V+ I LPPLRER ED+ LV +F+H +G Sbjct: 456 VITASHKDLKALVDAHAFRHDLFYRLKVVSIELPPLRERLEDLPELVTHFIHKACAAIGR 515 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 +A V + WPGN+REL N + +V + +G ++ LPP + + + + Sbjct: 516 PMIDMAESVYPYFYSYSWPGNVRELENCLAGMVAMC-NGSLLTVRDLPPEVRESLSEKTE 574 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKY 587 D A + +Q+I +AL + + K + LGI TLYRK+K+ Sbjct: 575 DEDVSLLASQT-------------RQIILQALVKTDGKILPASRLLGISRTTLYRKMKEL 621 Query: 588 ELL 590 ++ Sbjct: 622 KIS 624 >UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5 Tax=Geobacillus RepID=A4IJQ7_GEOTN Length = 689 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 144/543 (26%), Positives = 251/543 (46%), Gaps = 54/543 (9%) Query: 64 RHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQ 123 V+ + VV + R +P+I + + VG + + E + Sbjct: 172 DVVIPSGLLDVVRTGEGH----TEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIE 227 Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + + I T++D G+ ++D + Sbjct: 228 F-----------------------ISHELETVKQIVNELQTVMDAASDGIAIIDRHGGIV 264 Query: 184 FVNQTALKTLGVVQNNIIGKPIR---------------FRPLTFESNFTHGHMQHIVSWD 228 N+ +++ + P+ N I+ + Sbjct: 265 RQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSCSMLHQGAETGNTLIVSAVPIIEKE 324 Query: 229 DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISR 288 ++E ++ + ++ + + ++ + + + L+ M + + + Sbjct: 325 GQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKE----DGLIYRAPAMAHMVNIAKQ 380 Query: 289 IAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348 A +V++ GESGTGKE +A I + S R N+PF+ +NC AIPE L+ESELFGY GA Sbjct: 381 AAAVDVTVLLTGESGTGKEELANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGA 440 Query: 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIR 408 FTGA GK G + A+ GT+FLDEI ++PL LQ KLLR +++ EI+ +GA +P Q+D+R Sbjct: 441 FTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRVLQSMEIVRLGAEAPKQIDVR 500 Query: 409 IISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGS 468 +I+ATN+ L + + G+FR DLFYRLNV+PI +PPLR+R+EDI LLV ++ + Sbjct: 501 VIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQK 560 Query: 469 VYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS 528 +E + + WPGN+REL N +E + V + ++D + L Sbjct: 561 PLV-FTDRALEAMMDYHWPGNVRELVNAVERMF-VTATSSIVDEDQVAKWLH------LE 612 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 +S + A+ E+E+Q++ +AL++ + +Q A LG+ +TL RK +KY+ Sbjct: 613 PSPTISPVAIGEIIPLKQAVAEVERQLMIKALNKARTYRQAAKLLGVDASTLVRKAQKYK 672 Query: 589 LLN 591 + + Sbjct: 673 IKS 675 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 17/137 (12%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT- 211 K + + G++ +D E R+ +N A K + IG+ + + Sbjct: 118 KAVQLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTTKEEAIGRFLTDVVIPS 177 Query: 212 -----------FESNFTHGHMQHIVSW-----DDKSELIIGQLHNIQGRQLFLMAFHQSH 255 + G +I + + + +G +I + Sbjct: 178 GLLDVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVK 237 Query: 256 TSFSVANAPDEPHIEQL 272 + + + + Sbjct: 238 QIVNELQTVMDAASDGI 254 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 158/459 (34%), Positives = 238/459 (51%), Gaps = 31/459 (6%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR------------ 208 F I+++ VL+ D ++ V+ +N+ GV N I GK + Sbjct: 121 FFDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSVRKGAQISHAVNT 180 Query: 209 ------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV-- 260 E + + + VS K + +I Q +Q T FS Sbjct: 181 GVAMKNIYRQEGDREYFVDLYPVSVGGKILGGVVLAKDITEIQHLTKKVNQWKTQFSKLK 240 Query: 261 ----ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKL 316 ++ + ++ + M+ L ++A S +++++ GESGTGK++ ++AIH Sbjct: 241 SSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDIFSQAIHNY 300 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R+N PF+AINCA+I L+ SELFGY GAFTGAS GK GL + AN GTLFLDEIGD Sbjct: 301 SYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGTLFLDEIGD 360 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 M L LQ+KLLRA+E I +G S+ I+V++R+I+ATN +L + I + +FR DL++RLN+ Sbjct: 361 MDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRSDLYFRLNI 420 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 IPI LPPLR+R+E+I LV L + L I P+ V L+ + WPGN+REL N+ Sbjct: 421 IPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLI-ITPETVTSLKHYHWPGNIRELQNV 479 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 + + ++ VI LP + + + + S + E+EK I Sbjct: 480 LVFAATMIDED-VITIDCLPKKIKERI-LDHAVPPQPPHEPRSFITPLRESQSELEKDKI 537 Query: 557 REALSRHN----SKKQVADELGIGIATLYRKIKKYELLN 591 + L + KK+VA LGI +ATLY KI +Y + Sbjct: 538 SKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINK 576 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 144/465 (30%), Positives = 238/465 (51%), Gaps = 30/465 (6%) Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI------ 205 Q D + ++ + +++ D+ V + L G + ++GK + Sbjct: 2 QRVTDILELELDAILKSSTDNIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEKE 61 Query: 206 ------------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLF 247 + T + + +I H++ + Sbjct: 62 NIFCPSVTARVLREKKEVQLMQQTTTGRVVMATGVPVFDQQNCIVRVISFSHDLTELERL 121 Query: 248 LMAFHQSHTSFSVANAP-DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + +E + +V + + M ++ +L+ R+A S ++V+ +GESG GK Sbjct: 122 KEDYEKLRKQMEHYQTEIEELKPQNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGK 181 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 V AR +H S RRN+PFI +NC+AIPE L ESE+FGY KG+FTGA GK GLI+ A+ Sbjct: 182 NVFARFLHLSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQ 241 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEIG++PL +QAKLL+ ++ ++++ +G VD R+I++TN+NL + + +G F Sbjct: 242 GTLFLDEIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIF 301 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DLFYRL+VIPI +P LRER+EDI +L YFL ++ P +V+ L + W Sbjct: 302 RQDLFYRLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMD-KYFHPSIVDHLVHYHW 360 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E LV + I LP ++ + + S Sbjct: 361 PGNVRELENMIERLVI-TSETKAIYPEYLPFSIQKHSKVAATPSLA---EKRSEPSTLKE 416 Query: 547 ALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 A+E++E+Q + A + + ++AD LGI T+ RK+KK+ + + Sbjct: 417 AVEQVERQWLLRAAQQCKTTYEMADYLGISQPTVVRKLKKHRIDS 461 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 267/504 (52%), Gaps = 24/504 (4%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA 163 L +G+IS +A + E + + ++ + +T +L + + + + Sbjct: 219 HLYMHTLGLISSLATSIETKIKLVNHTECLEKSLED-ATKLNEELKKAKDNMASAHESLT 277 Query: 164 TMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQH 223 +D+G++ VD++ +++ +N A++ I + + S + Sbjct: 278 ASFAFIDEGMIAVDNKGKIRQINNEAMRIFRAHPEEIGNRNLNEFLSAESSIMHRANKGE 337 Query: 224 IVSWD-------DKSELIIGQLHNIQGRQLFLMA---------FHQSHTSFSVANAPDEP 267 + D +K+ + I + + ++ + + Sbjct: 338 SFTVDECVKVGTNKARPYRISVRPILNQYTKKLDVVILKLISCEKLNNAQSNRSGRSATY 397 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 IE ++GE ++ SR A SP +++++GESGTGKE+ A +IH + R N PF+A+ Sbjct: 398 QIEDILGESVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNI-YRPNGPFMAV 456 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+P +L+ SELFGY G+FTGA GK G I+ A+ GTLFLDEIGDMPL QA LLR Sbjct: 457 NCAALPRELVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPLEHQAILLR 516 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 +++ + ++ IG + +VD R+++ATN++L Q + E FREDL+YR++V+ I +PPLRER Sbjct: 517 SLQDKRVMRIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGIFIPPLRER 576 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LL F+ + +R+G P ++P+ +++ +++WPGN+R+L N + + +N + Sbjct: 577 GKDISLLSRLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHHAIN-TAND 635 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-K 566 VI+ + LP +L++ T+ S + ++ +EK+ I AL R N+ Sbjct: 636 NVIEPSNLPGYVLDDTTSPSSTGLP----RFAGAGDHNLCIKTIEKEAIEAALLRANNCI 691 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 A+ +G+ +TLYRK+K Y + Sbjct: 692 PTAAEIVGLSRSTLYRKLKDYNIS 715 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 166/470 (35%), Positives = 249/470 (52%), Gaps = 35/470 (7%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF 207 L + D + + +I N+ +GV VVD + V + TA K V ++GK + Sbjct: 125 LDKVYSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVKSKELLGKKLES 184 Query: 208 RPLTFESNFTHGHMQHI----VSWDDKSELIIGQL---------------HNIQGRQLFL 248 T + I S DKS II + +I Sbjct: 185 FFPTALLLTVLKSEKPIRNVYHSPRDKSYAIISAVPIYINGELVAAVSTDRDITETANLS 244 Query: 249 MAFHQSHTSFSVANAP------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + + ++ ++++G+ +V+++ ++A + SSV++ GES Sbjct: 245 VELETTKEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVASTNSSVLIGGES 304 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKEV ARAIH++SGR+ PF+AINC+AIPE L ESE+FGY GAFTGA GK G ++ Sbjct: 305 GTGKEVFARAIHQVSGRK-GPFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGKVE 363 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A GTLFLDEIGDMPL +QAKLLR ++ ++I+ +G P+ VD+RIISAT++NL + Sbjct: 364 LAENGTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTMVM 423 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 EGKFREDLFYRLNV+ I LP L+ R EDI + ++ F+ + P I+ +V L Sbjct: 424 EGKFREDLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIPKISMEVFHTLM 483 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 + WPGN+REL N +E+LV +GE+I + +P ++L + + + Sbjct: 484 NYDWPGNIRELKNTVEHLVVFSKNGEII-MSSIPEHILEK-------IGDSQYVDTPENY 535 Query: 543 AGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYELLN 591 ++ +E IR+A+ + +K Q A L I +TLY KIK Y + Sbjct: 536 DLQENIKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNIKE 585 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 239/506 (47%), Gaps = 47/506 (9%) Query: 129 NLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQT 188 + + + I + ++++ + ++ ++DN+ GVL +D E RV +N+ Sbjct: 98 DRAALFETLGRIPDLLEFRIVDTLPAEERANRFL-VLLDNLRDGVLSIDAEGRVTSINKV 156 Query: 189 ALKTLGVVQN-----------------------NIIGKP-------IRFRPLTFESNFTH 218 A + G + +G P + R L Sbjct: 157 AREAYGCTGAPGVSGTSGTPGGTPAADLSGLPLDALGLPDRGILDCLSGRELVDAKREVA 216 Query: 219 GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRV 278 + + I I G + P + +VG+ Sbjct: 217 TPGGGRLQFFVTRRPIRDGEGRIIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPA 276 Query: 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLE 338 + R+A + S + + GESGTGKE+ ARAIH SGR PF+ +NCAA+PEQLLE Sbjct: 277 IGFAISFARRVAATDSIIAIRGESGTGKELFARAIHTASGR-QGPFVPVNCAALPEQLLE 335 Query: 339 SELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIG 398 SELFGY GAFTG +GK GL + A GT+ LDEIGDMPL QAK+LR ++ + +G Sbjct: 336 SELFGYEAGAFTGGRRDGKPGLFETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVG 395 Query: 399 ASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYF 458 ++ + VD+RII+ATN+ L + + EG+FR+DL+YR+NV+PI +PPL+ER DI +L +F Sbjct: 396 GTAEVPVDVRIITATNRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHF 455 Query: 459 LHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPN 518 L RLG ++P + L H WPGN+REL N++E + P V +L + Sbjct: 456 LLGLAARLGGPVRSLSPGALARLAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFAH 515 Query: 519 LLNNGTTEQSD---------------VTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 L G +S + E H + + EK++I +A++ Sbjct: 516 ELEGGLFGESARLADGVADTVADAAALASGHEHHGDGEGRLKDMIAVFEKRIIVDAVAAA 575 Query: 564 NSKKQVADELGIGIATLYRKIKKYEL 589 S ++ A +LGI L K++++ L Sbjct: 576 GSVRKAARKLGISHTALLDKLRRHGL 601 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 255/470 (54%), Gaps = 39/470 (8%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-- 205 + ++ ++ ++ +I+N +G++VV+ + + F+N T L LG+ +++ IGK + Sbjct: 12 IEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKSDAIGKHVWD 71 Query: 206 ------------RFRPLTFESNFTHGHMQHIVSWD--DKSELIIGQL-----------HN 240 RP+ ++ +G +V + +IG + Sbjct: 72 VTSHSQLPQVIETGRPILYDFWEVNGRKLIVVRIPIINNEGNVIGAIGKSLFTDIPSGKL 131 Query: 241 IQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300 + + L + + + L+GE ++++K+L ++A S S++++ G Sbjct: 132 LFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVASSNSTILITG 191 Query: 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGL 360 ESGTGKE++A+AIH R +PF+ +NCAA+PE LLE+ELFGY GAFTGA GK G Sbjct: 192 ESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTGAKKGGKPGK 251 Query: 361 IQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420 + A GT+FLDEIG++PL +Q+KLL ++ RE+ +G + +D+R+ISATN+NL Sbjct: 252 FELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVISATNRNLEDM 311 Query: 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEI 480 + G FREDL+YRLNVI LP LRER EDI LLV+Y H ++L G +++ Sbjct: 312 VKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHVEGYTEQAMQL 371 Query: 481 LRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSL 540 L K+ WPGN+R+L N +E + + +++ + +P L S+V Sbjct: 372 LTKYHWPGNVRQLENALERMFSF-TDDKILSTEHMP-FLKKIVNVNSSEVNT-------- 421 Query: 541 DDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 + + E EK+MI +AL + ++ + A L I ++ LYRKIKKY++ Sbjct: 422 -KSLAETIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 155/456 (33%), Positives = 247/456 (54%), Gaps = 39/456 (8%) Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRF--------------RPL 210 +IDN +G +VV+ + V F++ L T+ + + + IGK I +P+ Sbjct: 21 LIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGKPI 80 Query: 211 TFESNFTHGHMQHIVSWD--DKSELIIGQL-----------HNIQGRQLFLMAFHQSHTS 257 +++ T G +V + + + +IG + + + L + + Sbjct: 81 SYDYWETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYRQ 140 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + ++GE ++++K++ +IA S S+V++ GESGTGKE+ A+AIH S Sbjct: 141 ELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNAS 200 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R PF+ INCAA+PE LLE+ELFGY +GAFTGA GK G + A GT+FLDEIG++ Sbjct: 201 YRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGEL 260 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL +Q+KLL ++ REI +G + VD R+I+ATN+NL + EG FR+DL+YRLNVI Sbjct: 261 PLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNVI 320 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 + +P LRERQ+DI LLV+YF +L + + +L KH WPGN+REL N + Sbjct: 321 SLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNTL 380 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E V ++ +I LP ++ S +++ EK++I Sbjct: 381 ER-VFILSDDNIISVNHLPFSIKMRK----------GNIIQSKRLTLDEMIDQTEKRIIL 429 Query: 558 EALSR-HNSKKQVADELGIGIATLYRKIKKYELLNT 592 + LS + + A+ LGI +++LYRK+KK+ + + Sbjct: 430 DTLSNVKDDRIAAAELLGIHLSSLYRKMKKHGIKKS 465 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 242/475 (50%), Gaps = 36/475 (7%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 V + + D + + T+ + + ++ V V VN+ LG+ G+ Sbjct: 122 VVDQKQRLEREKDELRRHLETVFNAVPDAIVTVSSGFTVLSVNEACRNILGMDTAAAGGQ 181 Query: 204 PI---------RFRPLTFESNFTHGHMQH--IVSWDDKSELIIGQLH------------- 239 P PL E+ +Q + D+ E+I+ Sbjct: 182 PCDKALGSAAAECMPLLREAVRAGHIVQRGGVAVQHDRGEIIVDISAVPLACAATATEHS 241 Query: 240 ---NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 + G + ++ T A + ++G VMR + RL+ +A + ++V Sbjct: 242 PGTDASGGVMLIVRDVTRLTGLERA-LAAQHIRRSMIGRSSVMRGVFRLVESLADTDTTV 300 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 +V GESGTGKE+VA A+H R PF+ +NC+A+ E LLESELFG+V+GAFTGA+ + Sbjct: 301 LVTGESGTGKELVADALHHSGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKD- 359 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 +TG IQ A+ GTLFLDEIGD+ +Q KLLR ++ +EI +G P++VD+R+++ATN++ Sbjct: 360 RTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKS 419 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L +A GKFREDL+YRL V+ + LP LRER+EDI LL +F+ G+ Sbjct: 420 LRALVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSS 479 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 ++L ++ WPGN+REL + +E+ + G VI + LP L+ +G + Sbjct: 480 AQQLLVQYDWPGNVRELRHAVEHAFIM-AGGNVIPAAALPAELMQSGRFSAQSAGTGALR 538 Query: 537 HLSLDDAGGTALEEME-KQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 H + D A A E KQ + AL +K + A LGI T+YR++++ + Sbjct: 539 HDAPDAAAQGA----EWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 173/564 (30%), Positives = 277/564 (49%), Gaps = 39/564 (6%) Query: 65 HVLETKTEKV----VTQSRFDPLCEGCDSKENCREKAFLGTPVILQDRCVGVISLIAVTH 120 V+ + + C KE + T + + + V + + Sbjct: 17 QVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRKKLVVNQNDSLYRY 76 Query: 121 EQQEH----ISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVV 176 E + I + R + D S + + + ++I + + ++ + + +L V Sbjct: 77 ECKSGNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYESALNLLSECILGV 136 Query: 177 DDENRVQFVNQTALKTLGVV-QNNIIGKPI-------RFRPLTFESNFTHGHMQHIVSWD 228 +++ V F++ + K LG+ N +GK R + GH+Q I + + Sbjct: 137 NEQGIVNFLSGSYAKFLGIDDPNEAVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNRN 196 Query: 229 D--------KSELIIGQLHNIQ-----------GRQLFLMAFHQSHTSFSVANAPDEPHI 269 K IIG + I + + + + + Sbjct: 197 IIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLSYYQTELQRLQEGRLSF 256 Query: 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC 329 + ++GE M+++K + +++ S S+V++ GESGTGKE+ A A+H+ S R + FI +NC Sbjct: 257 QSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNC 316 Query: 330 AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAI 389 AAIP LLE+ELFGY +GAFTGA GK G I+ A GTLFLDEIGDM L +Q KLLR + Sbjct: 317 AAIPRDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVL 376 Query: 390 EAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQE 449 + +EI IG + +VD+R I+AT++NL + + G+FREDL+YRLNV I +PPLRER+E Sbjct: 377 QEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKE 436 Query: 450 DIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEV 509 D+ + + + LGS V EI +H WPGN+REL N++E +NV+ G + Sbjct: 437 DMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIRELENVLERAMNVI-EGMI 495 Query: 510 IDSTLLPPNLLNNGTTEQ--SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 I LP L E+ D+ + + + + +E EK+ I AL + + Sbjct: 496 IQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNI 555 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 K+ A LGI A+LYRKI+KYE+ Sbjct: 556 KEAARLLGIHRASLYRKIEKYEIS 579 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 4/121 (3%) Query: 155 GDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFES 214 ++ + M+ G+ V+ + + + N+ L + IIG+ I + Sbjct: 5 ERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHIS-TIIPDRK 63 Query: 215 NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVG 274 + ++ KS Q+ + +++ + +E ++ Sbjct: 64 KLVVNQNDSLYRYECKSG---NQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIIS 120 Query: 275 E 275 Sbjct: 121 R 121 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 162/498 (32%), Positives = 248/498 (49%), Gaps = 20/498 (4%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + + V V + AV Q+ + L E + S + E + S Sbjct: 142 IKSKGIKVVVGGMPAVLTAQKYGLRGVLVECGEEAIQQSLQEALHIAEVRKIEAARSARL 201 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-------PIRFRPLTFESN 215 ++D++ QGV+V ++ N++ N A K + ++GK R + Sbjct: 202 KVILDSITQGVIVTNEHNKIVLYNPAAEKIFDLSSKKVLGKDAFETIPNTRMHNVLESGE 261 Query: 216 FTHGHMQHIVSWDDKSELI--------IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 G +Q I + I IG + + + + Sbjct: 262 AEIGVLQDINGGTIATNRIPIEVDGKRIGVVSTFEDITKIQQLEQKIRERIYKKGFVAKY 321 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 E ++ M +LK++ A + + +++ GESGTGKE+ A++IH S R N PF+A+ Sbjct: 322 FFEDILTANESMIELKKIADLYAKTDAEILIQGESGTGKELFAQSIHNASTRSNGPFVAV 381 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAAIP+ LLESELFGY GAFTGA GK GL + A+ GT+FLDEIG++ LQA+LLR Sbjct: 382 NCAAIPDNLLESELFGYEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEISKGLQARLLR 441 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 I+ +EI+ +G I +DIRI+SATNQNL + I G+FR+DL+YRLNV I LPPLRER Sbjct: 442 VIQEKEIMRVGGDKVIPIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFNIILPPLRER 501 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI L+ + L + + ++ +L ++ WPGN+RE +N++E L V Sbjct: 502 KEDISLIANKLLKKFAENYDIDFNKVIKEINPLLIEYDWPGNIREFNNIIERLALVA--- 558 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SK 566 V + L + E ++L + A++E EK +I L +++ K Sbjct: 559 -VQTKSHNWAETLRKVMHTVEAMDEHIVVKVNLKNGLKDAVKEFEKYIINSMLLKYDQDK 617 Query: 567 KQVADELGIGIATLYRKI 584 +V EL IG AT +RKI Sbjct: 618 DKVIKELKIGRATFWRKI 635 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 159/468 (33%), Positives = 246/468 (52%), Gaps = 32/468 (6%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------R 206 D + ++D+ + + VD E RV ++N+ L V GKP+ R Sbjct: 8 SSDEMVDFLIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIPNTR 67 Query: 207 FRPLTFESNFTHGHMQHI-----------VSWDDKSELIIGQL-----HNIQGRQLFLMA 250 + + G +Q+I + D K + IG++ L Sbjct: 68 LQVVVKTGIPELGKVQNINGRRAIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELVSKLKE 127 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + E ++ + +K L ++AP +VM++GESG+GKE++A Sbjct: 128 EVDCYKRELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLA 187 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 +IH S R +KPF+ INCAAIPE ++ESELFGY GAFT A +NGK G ++ AN GT+F Sbjct: 188 HSIHSASTRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVF 247 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGDMP +QAKLLR ++ E+ +G+ P+ V++R+I ATN+N+ + + +G FR DL Sbjct: 248 LDEIGDMPPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADL 307 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRL+ I + +PPLRER EDIELL +FL T + I + +EIL+ + WPGN+ Sbjct: 308 YYRLSSIILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGNV 367 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG----- 545 REL +L+E L + G +I + LP L + E+ LS ++ G Sbjct: 368 RELQHLLETLCCI-TDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYI 426 Query: 546 --TALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 + EK+++ E L +K++ A+ LGI TLY K++KY + Sbjct: 427 CSDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQ 474 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 249/475 (52%), Gaps = 40/475 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 S+L+ + + ++I +++N D V+V+D + V ++N+ + + + ++G+ Sbjct: 12 LESRLITTEYFKEWDAQILLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKLMGR 71 Query: 204 PIRFRP----------------------LTFESNFTHGHMQHIVSWDDKSELIIGQLHNI 241 + + + + G + + ++ Sbjct: 72 NLYDIEPQAKLLRVMEDGGGRDNDEVEYIKSLNIDSVGLAFPLYDSRKEKVGACAIFKDV 131 Query: 242 QGRQLFLMAFHQSHTSFSVANAPDE-----PHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 +S + E + + + + +++ L +++A + ++ Sbjct: 132 TQVVELTRKLQKSKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVANTNCTI 191 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 ++ GESG GKEV+A+ IH S R+ +P I +NCA+IPE LLESELFGY +GAFTGA G Sbjct: 192 LIQGESGVGKEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTGARKGG 251 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + AN GT+ LDEIGDM L +Q+KLLR ++ +E+ +G + I++D+R+I+ATNQN Sbjct: 252 KLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIAATNQN 311 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + + + +FR DL+YRL+V+PI +P LR R+EDI LV YF+ + G+ + P Sbjct: 312 LEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEGTD---LTPG 368 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 +L ++ WPGN+REL N++EY + V +G++++ P L +G + Sbjct: 369 AARMLEEYGWPGNVRELQNVIEYAMIV-KTGDILEIKDFPQYLRGDGAEDGPAEDGPCR- 426 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA-DELGIGIATLYRKIKKYELL 590 A+E++EK MI+ AL R+N K +A +ELG+ + Y K++KY L Sbjct: 427 -------LKDAVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGLK 474 >UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearothermophilus RepID=LIHY_BACST Length = 543 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 153/452 (33%), Positives = 242/452 (53%), Gaps = 37/452 (8%) Query: 143 IFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG 202 + + +++ + +M + GVLV+D + + + N A L V Q +I+ Sbjct: 124 LMTNTIIDSANEEQIWKYVVESMGEETADGVLVLDQDQTILYANSAAYSFLRVKQGDIL- 182 Query: 203 KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 K + R ++ + +I + + G QLF+ + Sbjct: 183 KEEQLREISHQ--------------------LIKKETSKYGVQLFIFKRAKRGPLLVTKP 222 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + ++V + R S + S ++V+++GE+G+GKEV+AR IH+ S RRN Sbjct: 223 DKEPYRFGRVVTYNPSFEKELRTASIASQSDANVLILGETGSGKEVLARTIHEQSPRRNG 282 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+A+N AIP +L+ SELFGYV+GAFTGA G+ G + A+ GTLFLDEIGDMPL LQ Sbjct: 283 PFVALNAGAIPRELIASELFGYVEGAFTGARKGGRPGKFEVADGGTLFLDEIGDMPLELQ 342 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA-EGKFREDLFYRLNVIPITL 441 LLR +E R+++ IG +++R+I+ATN+NL + IA G FR DL+YRLNV I + Sbjct: 343 VNLLRVLEERKVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVFTIHI 402 Query: 442 PPLRERQEDIELLVHYFLHLHTRRL-GSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 PPLR+R+EDIE L FL + G ++ +++L+ + WPGN+REL N++E Sbjct: 403 PPLRDRKEDIETLSLQFLKNFHQHYCGKGTCHLSNSALQLLQSYNWPGNIRELRNVIERA 462 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 + I LP + N A+ ++ + L+++EK+MI +AL Sbjct: 463 FLLAIDEPEILPIHLPEEIQN--------------ANCAIPPSSVNNLKDVEKKMIEQAL 508 Query: 561 SRHNSKKQVADELGIGIATLYRKIKKYELLNT 592 S + A +LGI +TLYRKIK++++ T Sbjct: 509 KESKSLTEAAKKLGITRSTLYRKIKQWKIHKT 540 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 156/568 (27%), Positives = 274/568 (48%), Gaps = 58/568 (10%) Query: 30 LEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDS 89 ++ I+DE L G L ++ + + +L+ K +C C Sbjct: 1 MDFSILDELLD-----GVLVIGLDYKIVYANDSAKKLLDVKENDFCK--GLFSICNSCPL 53 Query: 90 KENCREKAFL-GTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKL 148 K E+ + + S+ + + + + + +S + Sbjct: 54 KLVLEERESVQVYDIKTNTDVHACWSMSPLFNGDK------CEGVVEVFKDVSNVVSC-- 105 Query: 149 LEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-IIGKPI-R 206 T+++++ + +LV+D+ + N A K L +IG+ I Sbjct: 106 ---ILESQRQKTYKETILNSIVEAILVLDENGYIVEHNNIAKKMLCRTSEESLIGRHIKE 162 Query: 207 FRPLTFESNFTHGHMQHI----VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 L+ E G + K+ ++ ++ G + Q + SF Sbjct: 163 LVNLSLEEFPPQGERTDVYIETPCGRQKASTLVSPMNLGFGYVVSFYVIQQDNMSFCDK- 221 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 ++ + + +++ L+ + +V++ GE+G GK ++A+ IH LS RR+ Sbjct: 222 ------LDYIFTKSPTFQKVLDLVKSCSEHNVNVLIEGETGIGKSLLAKYIHLLSPRRDA 275 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+ +NCAAIPE LLE+ELFGYVKGAFTGA+ + K G + A+ GTLFLDEIGDMPL LQ Sbjct: 276 PFVKVNCAAIPENLLEAELFGYVKGAFTGATKD-KPGKAEIADGGTLFLDEIGDMPLSLQ 334 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AK+L +E +E +G+++P + + RII++TN+++ + + +G+FREDL+YRL+V+ I LP Sbjct: 335 AKILHLVEEKEFERLGSNTPRKTNTRIIASTNKDIKELMRQGRFREDLYYRLSVVNIYLP 394 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRER+EDI LL++ F+ +++ I+ D +++L + +PGN+REL +++E V Sbjct: 395 PLRERKEDIPLLINNFIEKYSKLYSKRVKSISGDAIKMLLGYDFPGNIRELEHIIEKAVI 454 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 G +I+ + + +N +Q EK+ I+ L + Sbjct: 455 TC-RGSIINIEDISLDFQSNNHKQQE-----------------------EKERIKAVLEK 490 Query: 563 HN-SKKQVADELGIGIATLYRKIKKYEL 589 N +K A LGI TL+RK+K+ + Sbjct: 491 VNYNKSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 149/441 (33%), Positives = 225/441 (51%), Gaps = 34/441 (7%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESN 215 ++ + N+ GV +D RV ++L + + ++G+ PL +E Sbjct: 317 RQTAQSIDAALQNLQ-GVETID--GRVF-------ESLPLPEGFVLGEKQVVVPLYYEDI 366 Query: 216 FTHGHMQHIVSW---DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 + S D S +I + + + HQ + E + Sbjct: 367 LCGAMLASCSSKCKCDSDSMELISLVLSHASGTIRRAILHQEEIKKLKQGVSESAGFEGM 426 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +G M+ + RLI +AP+ +V++ GESGTGKE+VA+AIH S RR+ PF+ INC+A Sbjct: 427 IGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFVVINCSAY 486 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P LLESELFG+ KGAFTGA + G + A GT+FLDEI ++ L Q KLLR ++ + Sbjct: 487 PATLLESELFGHEKGAFTGAIRQ-RPGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQ 545 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 + +G I+VD+RI++ATN++L + + G+FREDL+YRL+V+PI LPPLRER D Sbjct: 546 KFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRERGNDTA 605 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 LL +FL I+ + L + WPGN+REL N+ME V + GE I Sbjct: 606 LLARHFLERFAAVQDKRINEISSSAMRALLDYSWPGNVRELENVMEQAVVLC-KGETIAL 664 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VAD 571 LP L +E+ EK ++ E L K+ A+ Sbjct: 665 EDLPDKLQGARPAR------------------RKTIEDQEKNLLLETLEACGWNKKMAAE 706 Query: 572 ELGIGIATLYRKIKKYELLNT 592 LGIG +TLY K+KK+ ++++ Sbjct: 707 RLGIGRSTLYAKLKKHGIMDS 727 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 168/592 (28%), Positives = 278/592 (46%), Gaps = 39/592 (6%) Query: 32 VEIVDEN---LCRVAGTG---AYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCE 85 V +VD + L R T YG +G + N + + + L Sbjct: 113 VSLVDGSGIVLYRNGNTKMVDRYGNTIGPGVLWNEATIGTC---AHVLSIRHKKPISLLG 169 Query: 86 GCDSKENCREKAFLGTPVIL-QDRCVGVISLIAVTHEQQEHISDNLREFSDY--VRHIST 142 + + P+ + + V+ L+ + + + ++ V ++ Sbjct: 170 PENFPAYFQNDITSTAPLFDSDGKVIAVLILLQKLGDDPWDLDLHNLQYLTLGWVTSLAM 229 Query: 143 IFVSKLLEDQGPG--DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI 200 ++L + + T I M +G+++V E +Q +N A + N Sbjct: 230 EIKTQLNLKLSNSLFKSTNTALQTAIKMMTEGMVIVSREGLIQHINSPAAQIFNCNTNEA 289 Query: 201 IGKPIRFRPL----TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ-----------GRQ 245 IG+ I + E+ + +I G +IQ G Sbjct: 290 IGRNIMEFLVKNDALAEALRQLKMIHNIEVEVLNDYGTQGYTFSIQPLPADSSGSSGGVV 349 Query: 246 LFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTG 305 + + S + A + + + G M + K L R A SP++++++GESGTG Sbjct: 350 KIVDTEKAKNMVSSSSGAKLDFDFQSIKGASTKMLRTKSLAQRFARSPANILLIGESGTG 409 Query: 306 KEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAAN 365 KE+ A+AIH R + PFI +NCAAIP+ L+ESELFGY GAFTGA NG G I+ A Sbjct: 410 KELFAQAIHNE-YRPSGPFIVLNCAAIPKNLIESELFGYDSGAFTGAKKNGSPGKIELAE 468 Query: 366 TGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425 GTLFLDEIGDMP+ +QA LLR +E ++++ IG S VD R+++ATN++LA + G+ Sbjct: 469 GGTLFLDEIGDMPIEIQAVLLRVLENKQVMRIGGSKYRAVDFRMVAATNKDLATLVQSGQ 528 Query: 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR 485 FR+DL+YRL+V+ + +PPLR+R D+ L +F+ + R S P ++ + L ++ Sbjct: 529 FRQDLYYRLSVLRVDIPPLRQRDSDVLSLAEFFIQKYNWR--SKLPKLSHETKIKLMEYT 586 Query: 486 WPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGG 545 WPGN+R+L N + Y +NV E+I LP +++N S E + Sbjct: 587 WPGNVRQLENAIIYALNV-SEDELILPEHLPDEIIHNKNHPASLSLNPIELSKENNLNEA 645 Query: 546 T-----ALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYELLN 591 +L+E EK +++ AL++ + A+ LG+ +TLYRK+K + Sbjct: 646 ELRDVVSLKEAEKIVVQNALAKSGNNICIAAELLGLSKSTLYRKLKLLGIDE 697 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 239/472 (50%), Gaps = 32/472 (6%) Query: 122 QQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVD---- 177 Q+ + D+ + I ++ E + +++ I V++ D Sbjct: 4 QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALAR-----IGEFSPAVVLTDVRMP 58 Query: 178 -DENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIG 236 + +TA + + T G ++ D ++++ Sbjct: 59 QMDGLTLL--KTARE--QGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVT 114 Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSV 296 G+ L + Q + ++GE ++ + +I R A + ++V Sbjct: 115 -----LGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATV 169 Query: 297 MVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANG 356 +++GESGTGKE++A+A+H+ S R++KPFI ++CAA+ E LLESELFG+ KG+FTGA A Sbjct: 170 LILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALAR- 228 Query: 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN 416 K G + A+ GTLFLDEIG++ +Q KLLR ++ RE +G + ++VD+RI++AT+++ Sbjct: 229 KEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRD 288 Query: 417 LAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPD 476 L + G+FREDL+YRLNV+ +TLPPLR+R+ D+ LV++FL ++ G G+AP Sbjct: 289 LVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPG 348 Query: 477 VVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEA 536 ++ L H WPGN+REL N +E V + G+ + + LPP L S + Sbjct: 349 TLQALLSHDWPGNIRELENAIERAVVL-AQGQELSTDDLPPVLRGPRPHGTSTGALIP-- 405 Query: 537 HLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKY 587 G L +E++ I L S + A+ LGI + + ++K+Y Sbjct: 406 --------GATLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 234/458 (51%), Gaps = 28/458 (6%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF 212 + +++ +G+L +D ++ VN +A K L + +I G + P Sbjct: 194 RTEQEKTSRIHVLLNASKEGLLSIDSLRYIRMVNHSARKILHIS-ESITGMKVMDAPFPR 252 Query: 213 ESNFT----HGHMQHIVSWDDKSELI-----------IGQLHNIQGRQLFLMAFHQSHTS 257 E I + D + +G + + Q + + Sbjct: 253 EFKKLLLEDTACTNEIFKYGDMMLNVTKYPVMVQNSNMGIVVSFQNISDIMDLENDIRRK 312 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 + H + +VGE +R + + + + S+++++G+SGTGKE+ A++IH S Sbjct: 313 IHSKGHVAKAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQSGTGKELFAQSIHNHS 372 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 R++ PF+A+NCAAIPE LLESELFGY GAFTGA GK G + A+ GTLFLDEIG++ Sbjct: 373 MRKDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQKGGKPGYFELAHNGTLFLDEIGEI 432 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 PL QAKLLRAI+ REI+ +G+ I V+IRII+ATN+NL Q + EG+FREDLFYRL+V+ Sbjct: 433 PLKFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATNRNLEQLVREGEFREDLFYRLDVL 492 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 I +P L R+EDI LL +L H ++ D +L + W GN+R+L N+ Sbjct: 493 RIEIPFLENRREDIPLLARGWLLKHA-----PGTELSDDACRLLSQAEWNGNIRQLFNIC 547 Query: 498 EYLVNVVPSGEVIDSTL----LPPNLLNNGTTE-QSDVTEVSEAHLSLDDAGGTALEEME 552 E L + G +I LP G+ A + ++ E Sbjct: 548 ERLSVLCS-GSLIAGKDVRNVLPTLPQEPGSPALPLPAEPSLPPAAPFRSAEEDSPKDSE 606 Query: 553 KQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 ++ I +AL S+ + A LGI +TL+RK+K++ L Sbjct: 607 RETILKALEICRYSRSRAAALLGISRSTLWRKMKEFNL 644 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 147/471 (31%), Positives = 230/471 (48%), Gaps = 40/471 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 K+L G ++ ++DN +G+ V+D + +V + K G+ +G Sbjct: 89 VADKILGPYGNNSINEEMVRMVLDNPYEGLSVIDTKGKVTMFSPANEKWFGLESGGGMGL 148 Query: 204 PI-RFRPLTFESNFTHGHMQHIVSWDDKSELIIG------------------------QL 238 + + P T + + D E I QL Sbjct: 149 SLSQLAPGTHLTKVARTGVGERAVVDLHGETKITINLPVRKDNRVIGAFGRILFQSPEQL 208 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMV 298 + R + + + + E ++ + M+++ RIA S ++V++ Sbjct: 209 EKLADRVRAMERKVERYETLLDEMRRHRFSFENILTQNPDMQRIIEQARRIAASSATVLI 268 Query: 299 VGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKT 358 +GESGTGKE+ A+A+H+ S RR PF+AINC AIP L+ESELFGY +GAF+GAS GK Sbjct: 269 LGESGTGKELFAQALHEASHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKP 328 Query: 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLA 418 G + A GTLFLDEIG++P+ QAKLLR +E R+I +G ++PI VD R++ ATN++L Sbjct: 329 GKFELACDGTLFLDEIGELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLT 388 Query: 419 QFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVV 478 GKFR DLFYR+N PI +PPLR+R +DI LL +FL ++ G P + + + Sbjct: 389 ALANSGKFRSDLFYRINEFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFSEEAI 448 Query: 479 EILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHL 538 ++L + WPGN+REL +L+ + G ++ LP E + Sbjct: 449 KVLMSYEWPGNVRELRSLI-RQMAWKFQGMTVELHNLPQAFHK-------------ERKV 494 Query: 539 SLDDAGGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYE 588 ++ L E+ I AL + ++ A LGI LY+K+ + Sbjct: 495 TMSGTLEEQLARAERNAIETALQTSNGNRALAARMLGIHRTALYKKMNRLG 545 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 168/625 (26%), Positives = 287/625 (45%), Gaps = 43/625 (6%) Query: 2 ELATTQSVLMQIQPTIQRFARML-ASVLQLEVEIV--DENLCR--VAGTGAYGKFLGRQL 56 EL ++ ++ + + M+ ++V+ E IV D+N C + G LG Sbjct: 35 ELENILTINKELIEVSKIYIDMVFSAVMDNEFIIVLTDKNGCILYIKGAEENNSKLGGNN 94 Query: 57 SGNSRLLRH--VLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVI 113 + + + + R + + P+ + +G + Sbjct: 95 LEVGAYMDEQNIGTNAMGTAIKEDRCIQITATEHYIKRFHNLTCSAAPIHNTKGEIIGTL 154 Query: 114 SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGV 173 +L + H + + + + + ++IDN+D+G+ Sbjct: 155 NLTGRRDMKHPHTLGLVVFGVKAIENELDKKGIR-----DILNQTYNYMESVIDNVDKGI 209 Query: 174 LVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------FRPLTFESNFTHGHMQHI 224 ++V+ E +V +N+ ++ + ++ II + I L ++ ++ Sbjct: 210 MIVNKEYKVININKLGVEIFNIDKDLIISQDIHYILPDLGNVIEELENHNDDIIKELKLK 269 Query: 225 VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP-DEPHIEQLVGECRVMRQLK 283 + K L+ L + + ++ NA ++G+ + + Sbjct: 270 HTSRHKIRLVFKGLKHKENIIGMVVTISYEKEGKDNKNATGAFFTFNDIIGDSAAIVNVI 329 Query: 284 RLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG 343 IA SPS+V++ GESGTGKE++A+A+H S RR F+AINC AIP ++ESELFG Sbjct: 330 TNCKVIANSPSTVLIQGESGTGKEILAQAMHNYSVRRRNKFVAINCGAIPANIIESELFG 389 Query: 344 YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPI 403 Y G FTG G G + A+ GTLFLDEIG+MP+ Q KLLR ++ + +G S I Sbjct: 390 YEDGTFTGGKRGGNPGKFEIASGGTLFLDEIGEMPIDAQVKLLRVLQNGRVTRLGGSREI 449 Query: 404 QVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463 +D+R+I+ATN+NL + + +G FREDL+YRL VIPITLPPLRER+ D+++L+ +FL + + Sbjct: 450 PIDVRVIAATNKNLKREVQKGNFREDLYYRLCVIPITLPPLRERKGDVKMLIDFFLRIKS 509 Query: 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV----------------VPSG 507 +L P I + L + WPGN+REL N +E +VN+ + Sbjct: 510 FQLNKSIPEIDKSLYNKLLDYDWPGNIRELENYIENIVNLDGRSSFNLWEFEDNQSFETD 569 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG---GTALEEMEKQMIREALSRHN 564 + D +L LN E + + + LEE+E + I EA+ ++ Sbjct: 570 KTYDRKILKDGFLNKEIWEDDQTNGLLKNVNTEKTEYMVNTLNLEELEMKAIHEAVRIND 629 Query: 565 -SKKQVADELGIGIATLYRKIKKYE 588 + + A LGI TLY K+KK++ Sbjct: 630 HNMTKAAKTLGISRNTLYLKLKKHK 654 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 147/464 (31%), Positives = 230/464 (49%), Gaps = 40/464 (8%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR--PLTFESN 215 + ++D +D V +VD E RV N+ A + G+ +I+G+ I P + Sbjct: 6 LQASLGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPSSLMVR 65 Query: 216 FTHGHMQHI-------------------VSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 Q + V D + I ++ Q+ Sbjct: 66 RVLESGQRVEWTYHQPRPGIYVLVSAAPVIRDGQVVGAIAVERDVTDLVELSNELLQARG 125 Query: 257 SFSVANAP----------DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + G +R+ RL S +A + ++V++ GE+G GK Sbjct: 126 QVDALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATVLIRGETGAGK 185 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+ ARAIH+ S RR+ PF+ +NC AIP L ESELFGY GAFTGA+ G+ G ++ A+ Sbjct: 186 ELFARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGAFTGANPKGQRGKLELAHG 245 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDE+GD+PL Q KLLR +E R+ +G S+PI VD+R++ ATN++L + + +G++ Sbjct: 246 GTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRDLEELVRQGRY 305 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DL++RLNV + +PPLRER+EDI L+ FLH + R G + P V++ + +H W Sbjct: 306 RDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPAVIQAMMEHTW 365 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL + +E +V + P G V L+P L + Sbjct: 366 PGNVRELRSAVERMVILSPDGAV-GPELIPAILGPARRGAAAAGPAAPPCAPGAAPQD-- 422 Query: 547 ALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 E++ I AL+ ++ A LGI TLY ++++ L Sbjct: 423 -----EREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGL 461 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 270/584 (46%), Gaps = 68/584 (11%) Query: 32 VEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKE 91 V IVD++ + L + + + V+ +V Q+ + D + Sbjct: 18 VIIVDKDAKILYINKRAMHILKLKEGFIGKHVADVIPNTRLHIVVQTGVPEV----DEVQ 73 Query: 92 NCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLED 151 N E + + + L D C ++ +AV + KL E+ Sbjct: 74 NVGENIIITSRMPLTDECGNILGAVAVFRDITSM--------------------RKLAEE 113 Query: 152 QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT 211 I +ID+ + V D+ + VN+ K G+ +IGKP Sbjct: 114 ITNLHQIEARLKAIIDSTYDAISVADENGYIVLVNKAYTKITGLKPEEVIGKPATVDIAE 173 Query: 212 FESNFTHGHMQHIVSWD----------------------DKSELIIGQLHNIQGRQLFLM 249 ES ++ K + +H++ Sbjct: 174 GESIHMKVARTKKPIFNARLKVGPLKREVIVNAMPLIVRGKFSGSVAVVHDVSEILELTR 233 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 ++ + + + ++G+ + K ++A +P++V + GESGTGKE+ Sbjct: 234 ELNEVKR--YIRQLKAQYTFDDIIGKSEKLLIAKEQAKKVAKTPATVFLRGESGTGKELF 291 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A AIH S R+N PF+ +NCAAIPE +LE ELFGY K F G+ GLI+ A GTL Sbjct: 292 AHAIHNESNRKNNPFVTVNCAAIPENMLEIELFGYTKDTF------GQKGLIEEAEGGTL 345 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG MP+ +QAK+LR IE RE LPIG++ +V++RII++TN N+ + I + +F D Sbjct: 346 FLDEIGKMPISVQAKILRFIENREFLPIGSNRVKKVNVRIIASTNMNIEELIRKEQFLID 405 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV PI +PPLRER+EDIE L + R+ G I + VE L+K+ WPGN Sbjct: 406 LYYRLNVFPIYIPPLRERKEDIEELAKFLAKKIGRQYGRNVVDITDNAVEYLKKYDWPGN 465 Query: 490 LRELSNLMEYLVNVVPSGEVI-DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 +REL N++ + + GE I D +P L N + + + + + + Sbjct: 466 IRELENIIGRAIINMDIGETILDKRHIPLLFLENNSILKK------------EGSLRSMV 513 Query: 549 EEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYELLN 591 E+ E++MI +L +N + A +L I + TLY K+++Y LL Sbjct: 514 EDFERKMIESSLKENNGDRTLTAKKLKISLRTLYYKMERYGLLK 557 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 46/135 (34%), Gaps = 20/135 (14%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRP 209 + K + T+++++ +GV++VD + ++ ++N+ A+ L + + IGK + R Sbjct: 2 ELMKFYRTVLESIIEGVIIVDKDAKILYINKRAMHILKLKEG-FIGKHVADVIPNTRLHI 60 Query: 210 LTFES------------NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 + N + + +I + H Sbjct: 61 VVQTGVPEVDEVQNVGENIIITSRMPLTDECGNILGAVAVFRDITSMRKLAEEITNLHQI 120 Query: 258 FSVANAPDEPHIEQL 272 + A + + + Sbjct: 121 EARLKAIIDSTYDAI 135 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 176/605 (29%), Positives = 278/605 (45%), Gaps = 98/605 (16%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDEN----------LCRVAGTGAYGKFLG---- 53 S+L ++ TI + VL+L + I+ EN L R G + G Sbjct: 13 SLLAEVSRTI-THEEDINKVLRLVLFIMSENMHMQRGMITILNRSTGEIVINESFGLTEE 71 Query: 54 -----RQLSGNSRLLRHVLETKTEKVVTQSRFDPLCE---GCDSKENCREKAFLGTPVIL 105 R G ++ HV++T +V + +PL G ++ E F+ P+ Sbjct: 72 ERERGRYHIGEG-VIGHVVKTGKAVIVPSIQDEPLFLDRTGSRAQAKKEELCFICIPIKA 130 Query: 106 QDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATM 165 +G +S RH+ + + D Sbjct: 131 GSEIIGTLSAD---------------------RHVEPVTADEHRRKTRQTD--------- 160 Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIV 225 D + R+ + Q + L ++ +I + +R + L +E+ + + Sbjct: 161 -----------DRDERIDKL-QFYVDQLSIIAA-MISQAVRLKQLAYEAGSKNVQDLSNL 207 Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 S + P ++G + M L + Sbjct: 208 PPFAASIPP-----------------RSEDRQVNAIPPPSPDRPANIIGNTKPMVSLYSM 250 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 I +IA + ++ +V+GESG GKE+VA AIH S R KPFI NCAA+PE ++ESELFG+ Sbjct: 251 IDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCAALPENIVESELFGHE 310 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA A + G + AN GT+FLDE+G++ L +QAKLLR ++ +E +G S I+V Sbjct: 311 KGAFTGALAT-RHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKV 369 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+R+I+ATN+NL + I +G+FREDLFYRLN+ PIT+PPLRER+ DI LL YF+ + + Sbjct: 370 DVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKYNKA 429 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTT 525 I+ +++L ++ WPGN+REL N +E V + VI LPP L ++ Sbjct: 430 NQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVIL-SEDNVIHGYHLPPTLQTAESS 488 Query: 526 EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKI 584 + L+ +EK+MI EAL R + + A +LG+ + +I Sbjct: 489 GT-----------PYTGSLQQKLDAIEKEMIIEALKRTQGNMSRAAMQLGLSERIMGLRI 537 Query: 585 KKYEL 589 KK+ + Sbjct: 538 KKFNI 542 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 143/388 (36%), Positives = 207/388 (53%), Gaps = 9/388 (2%) Query: 207 FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDE 266 T + F+ + Q + D+ + +G + + Q + S Sbjct: 283 LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLS-EQLLSN 341 Query: 267 PHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIA 326 I ++ + + M L + + +A S S+V++ GE+GTGKEV+ARAIH+LS RR+KP + Sbjct: 342 LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVK 401 Query: 327 INCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLL 386 INCAAIP LLESELFG+ KGAFTGA + G + A+ GTLFLDEIGD+PL LQ KLL Sbjct: 402 INCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLL 460 Query: 387 RAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRE 446 R ++ REI +G S I V++R+I+ATN++L Q + + +FR DLFYRLNV P+ LPPLR+ Sbjct: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520 Query: 447 RQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPS 506 R EDI LL +F R + I + + L WPGN+REL N++E V ++ Sbjct: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAV-LLTR 579 Query: 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK 566 G ++ L T D S L EE E+Q I + L N Sbjct: 580 GNSLNL-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE-ERQRIVQVLRETNGI 637 Query: 567 ----KQVADELGIGIATLYRKIKKYELL 590 + A LG+ TL ++++ + Sbjct: 638 VAGPRGAATRLGMKRTTLLSRMQRLGIS 665 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 207/345 (60%), Gaps = 10/345 (2%) Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 F+ +S+ + QLVG M+++ RLI ++A + ++V++ GESGTGK Sbjct: 404 FIAQLEKSNFHLRQELKAFQGKFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGK 463 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+VARAIH S R PF++INCAA+PE LLESELFG+ +GAFTGA K GL + AN Sbjct: 464 ELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGHARGAFTGAV-TAKKGLFEEANE 522 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIGD+ L LQ+KLLR ++ E L +G + P +V++R+++ATN++L + + +G F Sbjct: 523 GTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAF 582 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R +L YRLNVI I LPPLRER++DI LL +FL +RLG G + ++ L + W Sbjct: 583 RPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALIRADW 642 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N++E V + + I+ LP N S + + Sbjct: 643 PGNVRELENVIERAVIL-TESKRIELGDLPRQFRNM-------AAGASGWAFTRGMSFKE 694 Query: 547 ALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYELL 590 A+ E ++I +AL + + A+ LG+ +TL IK+Y L+ Sbjct: 695 AVAAYESRLILQALEESQGVQARAAEILGLKRSTLNEMIKRYNLM 739 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 152/506 (30%), Positives = 241/506 (47%), Gaps = 32/506 (6%) Query: 100 GTPVI--LQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDN 157 +P+ +GVI L + H + + S +R + LE Q Sbjct: 158 SSPIFSPDGKELLGVICLSGYSENMHVHTIGLVSQASKNIRSR-----LQSLEKQQEIAI 212 Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN-------IIGKPIRFRPL 210 ++ +I++ G++ VD + + N A L + + IG + Sbjct: 213 KNQYMTAIIESKSSGIVTVDQQGNIVQTNHKARNLLAIKADARDNLLTTYIGNSLNIADC 272 Query: 211 T-----FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 F + + + + + + + G F+ + + Sbjct: 273 LERGRGFRAREIVSKKTGVSYFASLDPIRLEEEQLVGGIFTFVEKNEALRRAVKLIGTQA 332 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + ++G+ ++ L A + +SV++ GE+GTGKE+ A+AIH S +N F+ Sbjct: 333 PFTFDSILGDSPALKSALHLARISAKNTASVLLYGETGTGKELFAQAIHNASEHKNGSFV 392 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AINC AIP++LLESELFGY +GAFTGA G+ G I+ AN GTLFLDEIGDMP +Q KL Sbjct: 393 AINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIELANNGTLFLDEIGDMPFEMQVKL 452 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR ++ EI +G I V++RIISAT+++L + I +FR DL+YR++ + I +PPLR Sbjct: 453 LRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDVQQFRADLYYRISTLRINIPPLR 512 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ERQ DI LV YF+ H + + + K+ WPGN+R+L + E + + Sbjct: 513 ERQGDILKLVQYFIDRHIIKFDRRKQVLPSQTRLAISKYSWPGNIRQLESATERAIYLAE 572 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G + LP + + + + G LEE+E Q+I E L+ ++ Sbjct: 573 DGVL-----LPEHFAISDLFSNT-------NKEVVKVVGTQTLEEVESQIITETLAFFDN 620 Query: 566 K-KQVADELGIGIATLYRKIKKYELL 590 + A LGI TLYRKI KY ++ Sbjct: 621 NISKTAQSLGISRPTLYRKIDKYRIV 646 >UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-binding response regulator n=1 Tax=uncultured bacterium RepID=C5JBC1_9BACT Length = 584 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 238/466 (51%), Gaps = 20/466 (4%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNN---- 199 + Q + + +D ++ +D+E R+ +N A K L + ++ Sbjct: 116 LALEHSRVQNEKKMLVNRMEAVFQGVDDAIVAMDNEWRIIQINDAACKLLKLNHSSMNQS 175 Query: 200 -------IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNI------QGRQL 246 + K E + I ++ E I+ ++ + + Sbjct: 176 FQNEISWLFHKVEPLLRQAQEEWLGKRAVCMISMHENGMERILNCTASLFHDPIQNAQGI 235 Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 L+ +S + LVG M+++ LI R+A S+V++ GE+GTGK Sbjct: 236 ILVVRDESRLAMLERETQTRQGWHGLVGSSLPMQEVYELIERLAEVDSTVLITGETGTGK 295 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+VARA+H +S R F+A+NCAA+P L+ESELFG+V+GAFT A + K G + A+ Sbjct: 296 ELVARALHAISPRSQHSFVAVNCAALPVGLMESELFGHVRGAFTNAVRD-KPGRFKMADG 354 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIGD+PL +Q +LLR ++ + +G ++PIQV++R+++AT++NL + + EG F Sbjct: 355 GTIFLDEIGDLPLDMQVRLLRVLQEQTFEAVGDNNPIQVNVRVVAATHRNLRERVQEGLF 414 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 REDL+YRL V+ + LP LRE + D+ +L+ +FL R+ GI +V+ + +H W Sbjct: 415 REDLYYRLKVVEMRLPSLREHKTDLPMLIDHFLKKFNARMKRSIKGITDEVLTAIMEHDW 474 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL + +E+ + V P ++ + LP + N + + S G Sbjct: 475 PGNVRELEHTLEHAMVVAPQ-SILAWSNLPHDFRNRYFPVMKLLQQPSHQRGRPLKNGHP 533 Query: 547 ALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYELLN 591 + +++ I + L + Q A L I +TL+R++K L N Sbjct: 534 SGRGPDRETILQTLEDSRWQLQIAATRLQISRSTLWRRMKSMGLNN 579 >UniRef50_A5N2U4 Predicted signal transduction and transcriptional regulator protein n=2 Tax=Clostridium kluyveri RepID=A5N2U4_CLOK5 Length = 659 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 162/598 (27%), Positives = 281/598 (46%), Gaps = 28/598 (4%) Query: 8 SVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAGTG-----AYGKFLGRQLSGNSRL 62 ++L +I + + L + +E+ + G + + + + G S Sbjct: 74 NLLFKIAEPFMKNLYEVIKPLGFIAMLGNEDGINIDMGGNKKMMSIAEKINA-VKGASFE 132 Query: 63 LRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTPVIL-QDRCVGVISLIAVTHE 121 +++ + R + K N P+ + + VI++ + Sbjct: 133 EKYIGTNAASICSVEKRVAQVTYYEHYKANMHNWCCSSVPIFNKEGNMIAVINVSNMDTS 192 Query: 122 QQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENR 181 + + +L + + + KL + + + + +L +D+ Sbjct: 193 KHTPLLISLIASTARLIEMK----FKLYDANDIYNQNYWFLKESMKKNPRALLFLDNNGC 248 Query: 182 VQFVNQTALKTLGVVQNNIIGKPIRFRP----LTFESNFTHGHMQHIV---SWDDKSELI 234 + +N+ A++ LGV IG+ + + + ++++I+ +K+ L Sbjct: 249 INHINENAVEMLGVSTKESIGRHLSEVFDKKYIKNDKMDVGSNVKNIILEDRNRNKTYLK 308 Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 + ++ + L + + S + + E + C M + + R A + Sbjct: 309 LSKILSSDKYHLGYVGIIEQPVKNSGNHHKAKYSFEDIKYNCSKMDKEIKKAKRAAYNDM 368 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 V + GESGTGKE+ A+AIH R N PFIA+NC A+P +L++SELFGY KGAFTGA Sbjct: 369 VVFINGESGTGKELFAQAIHNYGKRCNGPFIAVNCGALPRELIQSELFGYEKGAFTGAKK 428 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 G+ G Q A GTLFLDEIGDMP+ LQA LLR ++ + + P+G++ I++D+RII+ATN Sbjct: 429 EGQPGKFQLAQKGTLFLDEIGDMPMELQANLLRVLQEKTVTPLGSNEIIELDVRIITATN 488 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR-LGSVYPGI 473 ++L + +G FREDL+YR++ I I +PPLRER +D+E L + FL + + Sbjct: 489 KDLLLEVEKGNFREDLYYRISGINIDVPPLRERGKDVEELFYKFLDKYASDVCEYKNIKV 548 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 + + L +++WPGN+REL N++ ++N + I LP +L E + E Sbjct: 549 TDEFIRALCEYKWPGNVRELENMVISILNNL-EDSCIGVEDLPAKILKCIKVEGNTKPE- 606 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKKYELL 590 D +L+ E I + L R N+ + A LGI ATLYRKI KY++ Sbjct: 607 ------NDGMYLKSLDSTEMINIEQTLKRCNNNISKSAKSLGITRATLYRKIDKYKIK 658 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 139/515 (26%), Positives = 249/515 (48%), Gaps = 57/515 (11%) Query: 103 VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIF 162 + ++ +G+I+ ++ E IS D Sbjct: 98 IDKNNKIIGIITHTDFINDLVEKISKKC-------------------RDIKNTKLGLTEL 138 Query: 163 ATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT----------- 211 ++I+ G+ + D E +N G+ + ++G+ ++ Sbjct: 139 DSIIECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSATLLV 198 Query: 212 -------------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT-- 256 I + K +++ + ++ ++ Sbjct: 199 LKNRKTTTIQQEFKTGVKVLVSSNPIFDKNGKIIMVVTNVRDVTQLYELKEQLQKNKEIT 258 Query: 257 ----SFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 S + ++V E ++ +L +RIA ++++++GE+G GK+ +A+ Sbjct: 259 LKYVSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKY 318 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IHK+S R K FI +NC A+P L+ESE FGY KGAFTGA+ GK GL + A+ GT+FLD Sbjct: 319 IHKVSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLD 378 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 E+G++P+ +Q KLLR ++ E++ IG + PI++D+R+++ATN++L I + +FREDL+Y Sbjct: 379 EVGELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYY 438 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVIP+ +PPLRER+ DI L+++FL ++ A D + + ++ WPGN+RE Sbjct: 439 RLNVIPLYIPPLRERKHDILPLINFFLTQLNKKYNFN-KIFASDALNCMYEYNWPGNVRE 497 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L N++E V + + I + LP N++ S+ V+ L+ +E Sbjct: 498 LKNIVERAVIMSEDDK-IKRSDLPKNIIG------SNGMIVTLNTFEEGINLKETLDAIE 550 Query: 553 KQMIREALSRHNSKKQVADELGIGIATLYRKIKKY 587 K++I++A ++ + + A LGI +T RK +KY Sbjct: 551 KKLIKKAYDKYGNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 163/508 (32%), Positives = 259/508 (50%), Gaps = 34/508 (6%) Query: 86 GCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFV 145 C C + L L++ ++A+ + ++ + + Sbjct: 48 TCPEGTACPYELILS--FKLEEDIF----VVALPKNIDRDLKLTPAFLVKFLLTVLEMLY 101 Query: 146 SKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 + E + I++ + + + + D++ ++ L + I Sbjct: 102 --IPEQKSDNLLIAEALQFLANQFNIEFFLFDNKGQL---------ILSQTHSPIQLSTF 150 Query: 206 RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD 265 ++ G +W + I + G ++ + + + + Sbjct: 151 TLWEKVSQTGEPEG--FIKTTWGNFYYRIFTKDGITTGSIVWKTEPTKQEENKFLFH--- 205 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 + + G+ ++K L+ +IA + S+V++ GESGTGKE+ AR IH LS R+N PFI Sbjct: 206 DDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQGESGTGKELFARYIHYLSPRKNHPFI 265 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 AINCAAIP+ LLESELFGY G+FTGA GK G + AN GT+FLDEIGDMPL LQAKL Sbjct: 266 AINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQLQAKL 325 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LR +E R++ IGA+ +D+RII+ATN++L + I FREDLF+RLNV P+ +PPLR Sbjct: 326 LRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLR 385 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 ER++DI LL+ ++L + +P+ +EIL+ + WPGN+REL N++ Y V++ Sbjct: 386 ERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIEILQNYDWPGNIRELKNVVTYAVSIC- 444 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G++I LP L N ++ +S EV H + K + L+++ + Sbjct: 445 KGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQVDQL-------KDQLEILLAKYGN 497 Query: 566 ----KKQVADELGIGIATLYRKIKKYEL 589 KK +A ELGI +ATLYR ++KY L Sbjct: 498 STQSKKLIAQELGISLATLYRWLRKYHL 525 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 207/354 (58%), Gaps = 14/354 (3%) Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 + + + + L + + T+ + +VG+ + + ++ R AP+ + Sbjct: 117 VNAVLVVLEKALEKLRLQRD-TANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRA 175 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V+++GESGTGKE+ A+A+H+ S R +K FI +NCAA+ E LLESELFG+ KGAFTGA Sbjct: 176 TVLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAI- 234 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 K G + A+ GTLFLDEIGD+ LQ KLLR ++ RE +G + ++VD+R+++ATN Sbjct: 235 GRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATN 294 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++LA + G+FREDL+YRLNV+ +TLPPLR+R+ DI LV +F+ +++ G G+A Sbjct: 295 RDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLA 354 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 P + + H WPGN+REL N++E V + G + + LPP L E++ + Sbjct: 355 PGTLNAVLSHDWPGNVRELENVVERAVVLC-KGSELTADDLPPTLRGPRPRERAPGALIP 413 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKY 587 G L E+E++ I L + A+ LGI + + ++K+Y Sbjct: 414 ----------GATLYEIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 154/449 (34%), Positives = 231/449 (51%), Gaps = 22/449 (4%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG-------------VVQNNIIG 202 + ++ T++D G +V+D + ++ N A++ L + +II Sbjct: 81 EEREQLIETILDASSDGFIVIDKDGTIKLTNSRAIQILRQAGNLEGKSIYTILPAPDIIK 140 Query: 203 KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 K + + H S + + IQG L L H Sbjct: 141 KALSKGIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLILTLRDMHDVREMVYSIT 200 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + +V + M + L IA + S+V++ GESGTGKE+ ARAIH R NK Sbjct: 201 QARQITFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGKELFARAIHAAGKRHNK 260 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PFI +NCAAIP+ L+ESELFGY G FTG GK GL + A+ GTLFLDE+ ++ +Q Sbjct: 261 PFIPLNCAAIPDTLIESELFGYEDGTFTGGKKGGKQGLFELAHGGTLFLDEVAELSAYVQ 320 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 AKLLR ++ + +G I VD+RII+ATN+NL + G+FREDLFYRLNVIP+ +P Sbjct: 321 AKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQFREDLFYRLNVIPLYIP 380 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 PLRE EDI LL+ +F+ + +LG ++P VE + ++ WPGN+RELSN++E + Sbjct: 381 PLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPWPGNVRELSNVVERAIY 440 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + G VI + Q+ V + + A A+E E+++I EA+ R Sbjct: 441 LC-DGRVITEDHI--------VFAQAAVDQPAAAVNDAIPLLREAVEATERKLIAEAIRR 491 Query: 563 HNSKKQVADELGIGIATLYRKIKKYELLN 591 + S +Q A LG+ L ++KK + Sbjct: 492 YGSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 9/402 (2%) Query: 194 GVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQ 253 G+ ++I + P+ + ++ + + L R A Sbjct: 61 GMEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDH 120 Query: 254 SHTSFSVANAPDEPHIE----QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 + N + +++G+ MR+L +I+ +AP+ ++V+V GESGTGKE+V Sbjct: 121 LRLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELV 180 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+A+H S R P +A+NCAA+ E LLESELFG+ KGAFTGA + G AA+ G++ Sbjct: 181 AKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERR-REGRFMAADKGSI 239 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIG++ +QAKLLR I+ REI +G P+ VD+RI++ATN++L + + G+FRED Sbjct: 240 FLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFRED 299 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 L+YRLNV+ I++PPLRER +DI LL +FL + G P ++ L + WPGN Sbjct: 300 LYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGN 359 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG--GTA 547 +REL N +E V + GE + LP + + + A D AG G A Sbjct: 360 VRELENAVERAVILSV-GEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMA 418 Query: 548 LEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYE 588 L+++E+++I L +K + A LGI ATL++K+KKY Sbjct: 419 LDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 146/464 (31%), Positives = 236/464 (50%), Gaps = 27/464 (5%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG- 202 + ++ S +F T+ GVL VD + ++ N ALK + + G Sbjct: 182 EAVRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGPKKKLQGL 241 Query: 203 ----------KPIRFRPLTFES------NFTHGHMQHIVSWDDKSELIIGQLHNIQGRQL 246 +P+ T + + + + + I G + Q Sbjct: 242 SLQSAFPFLSEPVSTVISTGTELPNQLIRWKNYTINATIHPVIINSRITGIVVTFQDVTQ 301 Query: 247 FLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 Q + H ++ E + + + A S++++ GE+GTGK Sbjct: 302 IQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEGETGTGK 361 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+ A++IH S R N PF+A+NCAA+PE LLESELFGYV+GAFTG + GKTGL + A+ Sbjct: 362 ELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGGKTGLFELAHK 421 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GTLFLDEI ++PL +Q KLLR ++ E+ +G I VD+RII+ATN +L++ +G+F Sbjct: 422 GTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHSLSRITEQGRF 481 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R+DL YRLNV+ + LPPLR R D ++L ++L+L+ R+LG + P +A +++L + + Sbjct: 482 RQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVATAAIQMLSDYHF 541 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGT 546 PGN+REL N+ E LV + E I + + L + T++ D Sbjct: 542 PGNIRELRNVTERLVVICMDKEEITADDMREALHPEELPVKFQSTDMPIPPFYQDG---- 597 Query: 547 ALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKYEL 589 E++ + L N ++ A++LGI TL+R++KK+ + Sbjct: 598 -----EREFLIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 157/571 (27%), Positives = 268/571 (46%), Gaps = 52/571 (9%) Query: 43 AGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTP 102 GT G +LR ++ + + E TP Sbjct: 117 FGTIVSEDVTGTNAHTLCAILRKPVQ--------------FIGPYNYCIHLDENIVSSTP 162 Query: 103 VILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFV--SKLLEDQGPGDNIS 159 + Q +G +++ + E+ I + ++ ++ KL + + Sbjct: 163 IFDQYGDLIGTLTIYQLFAEK--DIYNMQAHSLGWITSMAYAIENQLKLKQANEELSLSN 220 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------FRPLTF 212 + ++ G++ +D +N + LG+ Q +G+ + Sbjct: 221 GTLEATLAVVEGGLITLDKRGMTAHINNEGCRILGITQEETLGEHFTKYLQNDKITGILK 280 Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQLH-----------NIQGRQLFLMAFHQSHTSFSV- 260 + H I + + + + ++ + G + L + Sbjct: 281 DGKAVSNHEIIIDNGETEKQYVMSIYPIVPQDTCNINDKLNGIVIHLSRIENIKKLVNDW 340 Query: 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 A E + G+ + ++ + + + ++V++ GESGTGKE+ A+AIH S Sbjct: 341 RGASATYSFEDIQGKDPLFLKIVGIARQYSKLYANVLIHGESGTGKELFAQAIHNASC-P 399 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 PFI+INC+A+P L+ESELFGY GAFTGA G+ GLI+ AN GTLFLDEIGDMPL Sbjct: 400 EGPFISINCSAMPRNLIESELFGYEGGAFTGAERKGRPGLIELANEGTLFLDEIGDMPLE 459 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 +Q LLR +E ++++ +G I V R+ISA+N+NL + E FREDL+YRL V + Sbjct: 460 IQPVLLRVLEEKKVMRVGGKKYIPVSFRVISASNKNLNIMVQEKTFREDLYYRLAVFKLQ 519 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLR+R +DI L +F+ ++++G P ++ ++++++ WPGN+R+L N M Y Sbjct: 520 IPPLRKRPDDIISLAQFFIKGTSQKVGRKMPVLSKAAQKVIKEYAWPGNVRQLENSMVYA 579 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 V++ G+VI + LP ++ N T E S + + +L EME I+ AL Sbjct: 580 VSL-TQGDVIGAEDLPDDITNPITPENSRL-----------FSSVMSLREMEITAIKNAL 627 Query: 561 SRHN-SKKQVADELGIGIATLYRKIKKYELL 590 + N + A+ LG+G +TLY+K+K+Y L Sbjct: 628 EQTNQNIANAANILGLGKSTLYKKLKEYHLE 658 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 166/483 (34%), Positives = 252/483 (52%), Gaps = 40/483 (8%) Query: 136 YVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGV 195 + + + + + + ++ ++DN G+++VD E R+ N K +G+ Sbjct: 1 MIMKQNEVEIESSEDQLQQLKDSLEMIEELLDNAYHGMVLVDHEGRIIKWN--YEKLMGI 58 Query: 196 VQNNIIGKPI-------RFRPLTFESNFTHGHMQHIVSWDDKSELI-------------- 234 + ++ +P+ R + +Q I +D + I Sbjct: 59 KEEEVLMRPVEEIIENTRLHIVAKTGEKELFDVQKIQGYDMITSRIPIVKDGRVIGAAGT 118 Query: 235 -----IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRI 289 + +L ++ R L + + + E +V + R M LK L + Sbjct: 119 VLFKDVKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQMIYLKELARKA 178 Query: 290 APSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAF 349 A S S+V++ GESGTGKE A AIH+ S RR FI INCAAIP +LLESELFGY GAF Sbjct: 179 AESNSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITINCAAIPNELLESELFGYDAGAF 238 Query: 350 TGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRI 409 TGA GK G + N GT+ LDEIG MPL +QAK+LR +E+RE IG + IQ+D+RI Sbjct: 239 TGAKKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRI 298 Query: 410 ISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSV 469 I+ATN+ L + I EG+FR+DL+YRLNVIPI +PPLRER EDI +L L LG Sbjct: 299 IAATNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIE 358 Query: 470 YPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSD 529 + + +E+L+K++WPGN+REL N +E +N+V G++I LP +L+ + + Sbjct: 359 MKELTFETIEVLKKYQWPGNVRELRNTLERALNIV-QGDMIYPEDLPGHLIESSS----- 412 Query: 530 VTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYE 588 ++ S + + E + I+ AL + +K A +LGI LY+KI+ YE Sbjct: 413 -----KSSYSHSLLLKDIMAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQAYE 467 Query: 589 LLN 591 + Sbjct: 468 MNK 470 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 214/370 (57%), Gaps = 15/370 (4%) Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL----VGECRVMRQ 281 + DK++ + L FL+ + + + + +G+ + ++ Sbjct: 380 TCRDKAKAVYHGLAEANMCLPFLLHKSEQEIAHYRQEIQLMETFQGISQQIIGDSKKVKT 439 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 K + + A S S+V+++GESGTGK + ARAIH R++ PFI +NC+AIPE LLESEL Sbjct: 440 AKNFVLKAAQSASTVLLLGESGTGKGLFARAIHFSGNRKDGPFIKVNCSAIPETLLESEL 499 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FGY +G+FTGA GK G + AN GT+FLDEIGDMP +QAK+LR ++ REI IG Sbjct: 500 FGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQAKMLRVLQEREIERIGGHH 559 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 I +D+R+I+ATN++L + I +FREDL+YRL+V+ I++PPLRE DI +L + Sbjct: 560 SIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPPLREMASDIPVLTQSLIER 619 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN 521 ++ ++ +V+ + ++ WPGN+REL N++E L+N+V +I+ LP +L Sbjct: 620 ICKKHHVPPKKVSEEVMGVFCRYPWPGNVRELENMLERLLNLVEED-IINIDHLPAHLWQ 678 Query: 522 NGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATL 580 + + + L+ + E+E+ I AL N++ + A LG+ +T Sbjct: 679 HIQSSRY---------LASGHSLDNMTSEVERDAIINALKATKNNRSKAAKLLGLHRSTF 729 Query: 581 YRKIKKYELL 590 Y K+K+Y+LL Sbjct: 730 YEKLKRYDLL 739 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 146/437 (33%), Positives = 229/437 (52%), Gaps = 45/437 (10%) Query: 185 VNQTALKTLGVVQNNIIGKPIRF-------------------RPLTFESNFTHGHMQHIV 225 +N LG +IG+ ++ R + F + Sbjct: 138 INHLYASLLGAKAGALIGREVKDILPFTSLPEVLSSGMAVAGREVAFRGKKLLLSEVPVK 197 Query: 226 SWDDKSELIIGQLHNIQG-----------RQLFLMAFHQSHTSFSVANAPDEPHIEQLVG 274 +G+ +++ R L + + D+ + ++G Sbjct: 198 DGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQELQSIQGDQDAWQGILG 257 Query: 275 ECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE 334 M +LK++ +R+A ++V++ GESGTGKE++A+AIH+ S RRN+P I INCAAIPE Sbjct: 258 VSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIPE 317 Query: 335 QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREI 394 LLE+ELFGY +GAFTGA+ GK G + A+ GT+FLDE+GD+PL +Q KLLR ++ R Sbjct: 318 NLLEAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAF 377 Query: 395 LPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454 +G I+VD+RII+ATNQ+L A GKFR DL+YRL V+ +T+PPLRER D+E+L Sbjct: 378 ERVGGRRTIKVDVRIIAATNQDLLALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEIL 437 Query: 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG-EVIDST 513 V + R G+ P+V + ++ WPGN+REL N++E+ N + G E+I Sbjct: 438 VAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVLEHAFNFLDPGEEIITLK 497 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADE 572 LP + +A+ E+++I +AL+ +K++ A Sbjct: 498 HLPATMQRTIGGG-------------GGLKLKSAVATAEREVILKALAAAGGNKQEAARL 544 Query: 573 LGIGIATLYRKIKKYEL 589 LGI + LY+K+K+Y++ Sbjct: 545 LGIHPSGLYQKLKRYDI 561 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 143/388 (36%), Positives = 218/388 (56%), Gaps = 12/388 (3%) Query: 208 RPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT--SFSVANAPD 265 P+ + F + + I+ + L A QS T +F A P Sbjct: 76 IPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDTVATFPQAQEPA 135 Query: 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFI 325 ++G MR + + I R+A S ++V++ GESGTGKE+VARAIH S RRN PFI Sbjct: 136 SSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFI 195 Query: 326 AINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKL 385 +NCA +P+ LLESELFGY KGAFTGAS+ K G + A+ GT+F DEIG++ L QAKL Sbjct: 196 KVNCANLPDSLLESELFGYEKGAFTGASS-LKVGRFELAHEGTIFFDEIGEISLATQAKL 254 Query: 386 LRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLR 445 LRAI+ +E +G + I+V++RI++ATN+ L Q + EG+FREDLF+RLNV+ I +PPLR Sbjct: 255 LRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLR 314 Query: 446 ERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVP 505 +R+EDI LL+ +FL + + G + + +++L + WPGN+REL N++E + + Sbjct: 315 DRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERSIIM-A 373 Query: 506 SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS 565 G +I + L + + + ++E+++I +AL +N Sbjct: 374 RGAIIVPEDI-------QLGATVSQQPTELEILDENLSLKQIISDVERKVILKALEENNW 426 Query: 566 -KKQVADELGIGIATLYRKIKKYELLNT 592 + VA L I +LY K+K+ + Sbjct: 427 CRTTVAKVLKINRRSLYAKMKELGIEEN 454 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 154/529 (29%), Positives = 261/529 (49%), Gaps = 35/529 (6%) Query: 80 FDPLCEGCDSKENCREKAFLGTPVILQ-----DRCVGVISLIAVTHEQQEHISDNLREFS 134 + LC+ + ++A + D VG ++ + +E ++ Sbjct: 125 LEKLCQAEIAYYTVHDEASTLEAIHSARANGADVFVGAGTMCGL--CDKEALNRVHIHTK 182 Query: 135 DYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLG 194 D + SK+ +T+++ ++ V +Q +N A +T Sbjct: 183 DIAIEQALKQAMDAARTINMERARSKMTSTILNTSSDALIAVSGSGLIQALNNQAYRTFQ 242 Query: 195 VV-QNNIIGKPIRFRPLTFESN---FTHGHMQHIVSWDDKSELI-----------IGQLH 239 + Q + G+P+ + T + ++ W D+ G + Sbjct: 243 LSSQADYTGRPVEEVCPALKWKDVVETGREREEVIQWKDRKLYTEYRPVLVDKMGKGAII 302 Query: 240 NIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVV 299 + + + A + S + + + ++G +R+ + R + S+V++V Sbjct: 303 VARYTEQIIEAETKIRQSLAKQGLTAKYSFDDIIGSSPAIRENILMAKRYSRVDSNVLIV 362 Query: 300 GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTG 359 GE+GTGKE+ A +IH+ S R +PF+A+NCAA+PE LLESELFGY GAF+GAS NGKTG Sbjct: 363 GETGTGKELFAHSIHRESRRSAEPFVALNCAALPENLLESELFGYEPGAFSGASKNGKTG 422 Query: 360 LIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQ 419 L + A+ GT+FLDEIG++P+ LQAKLLR ++ REI IG++ VD+R+ISATN N+ + Sbjct: 423 LFELAHKGTIFLDEIGEIPISLQAKLLRVLQEREIRRIGSNRVQPVDVRVISATNINIEE 482 Query: 420 FIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVE 479 I EG+FR DL+YRLN++ IT+PPLRER +DI +V ++L +G P ++ + V+ Sbjct: 483 KIQEGQFRADLYYRLNLLDITIPPLRERGDDIREMVDFYLTRFACEMGKPIPRLSKEAVD 542 Query: 480 ILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLS 539 ++ + WPGN+REL N+ E L+ + + E+ + + E L Sbjct: 543 LMTHYGWPGNVRELRNICERLIVLSDTTEI-----------GLREIQMLKIFRKKEGPLP 591 Query: 540 LDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYR--KIKK 586 ++ E ++ L K+ +A ELG+ TL+R K+ + Sbjct: 592 GTQTPDKETDQPETGIVYANLKPRKKKQDIAKELGVSRTTLWRMEKMAR 640 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 274/566 (48%), Gaps = 46/566 (8%) Query: 42 VAGTGAYGKFLGRQLSGNSR--LLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFL 99 + T A K G+ + L+ V + + E+ E Sbjct: 81 IFSTIALAKKYGKNIVVLGFKSLVEEVQQIGPILDIN--------LKAYHIEHEEEGESY 132 Query: 100 GTPVILQDRCVGVI--SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDN 157 +I + I +A + I E + S ++LE Sbjct: 133 IKKIIASGEKIDSILGGTVAENIASKFGIHTVHLETGEAAIEKSIKEAVRILEVSRKEKE 192 Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPL 210 ++ F ++++++QGV+ ++ E +V N A K G+++ +I+GK I + + Sbjct: 193 KAEQFKAILNHINQGVISINKEGKVTTFNPGAEKITGIIEKDILGKDIINFMSNTKLIDV 252 Query: 211 TFESNFTHGHMQHIVS--------WDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVAN 262 + +I + ++G + + + ++ Sbjct: 253 VKTGMPILSQLHNIGKTEILTNDIPIIVDDKVVGAVSTFEAAAKIQEYEQKIRSNLRDKG 312 Query: 263 APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322 + ++ ++GE +++ +K+ + A + S+V++VGESGTGKE+ A+ IH S R+N Sbjct: 313 YIAKYNLSDIIGESEIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIHLSSKRKNG 372 Query: 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQ 382 PF+A+NC AIP L+ESELFGY +GAFTGAS GK GL A+ GT+FLDEIG++P+ Q Sbjct: 373 PFVALNCGAIPGNLIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQ 432 Query: 383 AKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442 A+LLR I+ RE+ P+G++ I +D+RII+A N++L + I +G FR DL+YRLN++ + +P Sbjct: 433 ARLLRVIQEREVRPLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVP 492 Query: 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVN 502 L ER+EDI ++ +FL L R I+ + IL+++ WPGN+REL N+ E LV Sbjct: 493 TLMERREDIGIIFKHFLKLMCSRFNK-VVKISEKAINILKEYNWPGNIRELENITERLVV 551 Query: 503 VVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562 + I L+ L + D ++LE +++ I + LS Sbjct: 552 LAEDE--ITDELVKEEL---------------GDFIHYKDEKVSSLEYLKQNQILKVLSE 594 Query: 563 H-NSKKQVADELGIGIATLYRKIKKY 587 ++ A +LGI L+R +KKY Sbjct: 595 CKGNQTLAAQKLGISRTHLWRLLKKY 620 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/422 (36%), Positives = 238/422 (56%), Gaps = 18/422 (4%) Query: 173 VLVVDDENRVQFVNQTALKTL-GVVQN----NIIGKPIRFRPLTFESNFTHGHMQHIVSW 227 V+V+D ++ N + + L G+ + +I T G ++ Sbjct: 53 VVVLD----IKMPNLSGMDLLRGIKADRPDVEVIMMTAFATVETAVEAVKAGAYDYLTKP 108 Query: 228 DDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLIS 287 + + + + R+ + T E L+G+ MR + +L+ Sbjct: 109 FENIDEVSLTVAKAAERKAL-----KDRTRALEEALTVRSQFEDLIGQSTQMRSVFKLVE 163 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 ++ S ++V++ GESGTGKE+VARAIH S R++KPF+A+NC+A+ E LLESELFG+VKG Sbjct: 164 TVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKG 223 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 +FTGA+ K GL +AA+ GT+FLDEIGD+P Q +LLR ++ E+ +GA+ P++VD+ Sbjct: 224 SFTGAT-GNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDV 282 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 R+I+AT+ +L++ +GKFREDLFYRLNVI I LPPLR+R ED+ LL H+FL L+ + Sbjct: 283 RVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPEDVPLLAHHFLKLYASKAD 342 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 GI+P +E L +RW GN+REL N++E V + EVID LPP + Sbjct: 343 KKVTGISPRAMEALTCNRWTGNVRELENVIERAVVL-TGNEVIDVEDLPPGFQ-SAPQPD 400 Query: 528 SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKK 586 S V S AHL A A+ E++ + L ++N + A G+ + R +K+ Sbjct: 401 STVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQ 460 Query: 587 YE 588 YE Sbjct: 461 YE 462 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 244/461 (52%), Gaps = 27/461 (5%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP 209 E + ++D+++ G+ V+ + F N+ A K G + N++GK Sbjct: 121 ELVNRIHYEEQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKAC-GTL 179 Query: 210 LTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQL-------------------FLMA 250 E ++ +++ + + G+L + QG + Sbjct: 180 FAGEGKQVCQALKQVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAF 239 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + H ++G+ M+++ ++ +A + S++++ G +GTGK+++A Sbjct: 240 QDMTLVQQLNQAIKGQYHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLA 299 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 + IH S R +PF+ +NCAAIP+ L+ESE+FGYV+GAFTGA + K G A++GT+F Sbjct: 300 KIIHSESNRSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRD-KPGRFSEAHSGTIF 358 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGD+PL LQAKLLR +E RE P+G+ +VD+RI+SATN+ L +A+ FREDL Sbjct: 359 LDEIGDLPLALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDL 418 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 FYRLNV+ I LPPL R+ D+ LL+ + + + +P I +EIL + +PGN+ Sbjct: 419 FYRLNVLRIDLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNI 478 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++E+ + + EVI S LP +L+ E + + +G Sbjct: 479 RELENIIEHAIILCQE-EVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGT----A 533 Query: 551 MEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYELL 590 E+Q I + L + +Q A+ LG+ TL+RK++K+++ Sbjct: 534 QERQQILDVLRANRWHRQTTANLLGMDRTTLWRKMRKFKIS 574 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 16/140 (11%) Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR------- 208 N+ + ++D+ + GV++VD+ R++ N +A L + ++ IIG + Sbjct: 3 HNLYDQWLKILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPCF 62 Query: 209 -------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVA 261 P T + + + L + QGR + Q H+ F+ Sbjct: 63 PTCPFHDPETSDVRDMDVEFLDEAGEKHRVTRVGAPLLDDQGRVQGCVTVLQDHSPFNEL 122 Query: 262 NAPDEPHIE--QLVGECRVM 279 + +++ + M Sbjct: 123 VNRIHYEEQSLKIILDSLNM 142 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 259/516 (50%), Gaps = 39/516 (7%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREF--SDYVRHISTIFVSKLLEDQ--GPGDNIS 159 I++ + V V + + + I +N+ D I+ I + + D + Sbjct: 85 IMKKKVVSVEKGMPIDECRDLMIKENIGILPVVDDNGKITGILRQEHIRDYLYMQLEEYG 144 Query: 160 KIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLT-------- 211 +I ++ +G+ V++E V N + G+ ++I+G+PI Sbjct: 145 ITLKYIIGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLEDTICERVLR 204 Query: 212 ------------FESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 + + + + + + ++ ++ + +++ Sbjct: 205 RRIGISDVYSTYKKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNLSFELEKTNEKLK 264 Query: 260 VANAPDEP----HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK 315 + E ++G+ + + K + +IA + SS+ + GESGTGKEV +RAIH+ Sbjct: 265 YLQDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEVFSRAIHE 324 Query: 316 LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIG 375 SGR+ F+ +NC+AIP +L ESE FGY GAFTGA+ GK+G+ + A GT+FLDEI Sbjct: 325 QSGRK-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGTVFLDEIA 383 Query: 376 DMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLN 435 D+PL +QAKLLR ++ +E+ +G I+++ RIISATN++L + + E KFREDL+YRLN Sbjct: 384 DLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFREDLYYRLN 443 Query: 436 VIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495 V+ I +PPLRER+EDI +L+HYFL R G ++ + +IL +RW GN+REL N Sbjct: 444 VVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKGNIRELKN 503 Query: 496 LMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQM 555 +E +V + +I+ +P ++ + D +A+E++E + Sbjct: 504 TVENMVVL-SDSSIIEKDAIPSYIVESAKNSTDD--------EDYPLDLTSAIEKLEIKN 554 Query: 556 IREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 I +AL +K + A L I TLY K+ Y + Sbjct: 555 ITKALEMSKGNKAKAAKILNIPRTTLYYKLDLYGIK 590 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 164/598 (27%), Positives = 288/598 (48%), Gaps = 65/598 (10%) Query: 21 ARMLASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRF 80 + S L + +V++ + Y G +L G S + +L + + V+ SR Sbjct: 125 IEGIFSRLSHGLVVVNKE-NLI----TYVNNEGEKLLGMS--VEKLLNQRADLVIPHSRL 177 Query: 81 DPLCEGCDS----KENCREKAFLG--TPVILQDRCVGVISLIAVTHEQQEHISDNLREFS 134 + + K+ ++ + TP+IL VG ++L Sbjct: 178 HHVLQTGKEEIAQKQVVGKQVIITNRTPIILNQNIVGAVAL------------------- 218 Query: 135 DYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALK--- 191 + IST+ +L+E+ + K ++ ++ + + D + R + N Sbjct: 219 --FQDISTV--EELIEELNRVKELKKQLELILHSVKDLIALTDSKGRFIYCNPEMEGFLN 274 Query: 192 ----------TLGVVQNNIIGKPIRFRPLTFESNFTHG---HMQHIVSWDDKSELIIGQL 238 G+ + K + P + + + I+ ++ I+ Sbjct: 275 SLDNPDKVQFIFGIKKWKFCIKSQKCIPQLLDFKLGNSYIAKLSPILVEEELCGTILTMS 334 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAPDEP-----HIEQLVGECRVMRQLKRLISRIAPSP 293 + + LF ++ + + + +++G V+ + + +++A S Sbjct: 335 PFHETQSLFDQLINEKKRIKYLESELSKYKKLNDSFLEIIGCSDVLMETLFIANKVAKSD 394 Query: 294 SSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS 353 S+V++ GESGTGKE++A+ IHK+S R++KPFI +NCAAIP L+ESELFG+ KGAFTGA Sbjct: 395 STVLITGESGTGKELIAKGIHKVSLRKDKPFIRVNCAAIPPNLIESELFGHEKGAFTGAL 454 Query: 354 ANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISAT 413 + + G + AN GT+FLDEIGD+ L LQ KLLR ++ +EI+ +G I++++R+++AT Sbjct: 455 -HMRRGKFEQANNGTIFLDEIGDLKLDLQVKLLRVLQEKEIVRVGGDKTIKLNVRVLAAT 513 Query: 414 NQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGI 473 N NL + + + +FREDL+YRLNVIPI +PPLRER+ DI+ L+ YF L Sbjct: 514 NGNLQKMVHDREFREDLYYRLNVIPIHIPPLRERKADIQSLIEYFRGHFNTSLNKEIHSY 573 Query: 474 APDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEV 533 D + L K+ WPGN+REL N++E +N+ +V++ LP N+ N ++ Sbjct: 574 TDDFLHALMKYNWPGNIRELQNVIERAMNL-SENDVLEIGDLPDNINMNSQQNSIINNQI 632 Query: 534 SEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 L + E EK++++ + + S LG+ T+ K++KY L + Sbjct: 633 ENTETVL------TMSEYEKKILKHVIQFYPSFNAAGKALGLTHKTVAAKVRKYNLES 684 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 142/466 (30%), Positives = 237/466 (50%), Gaps = 36/466 (7%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR---- 208 +++ + T++D + GV++V E + VN+ G Q+ ++G+ Sbjct: 1 MNSSDLNLYWKTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSS 60 Query: 209 ------------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG------------R 244 + F+ ++ D I+ ++ Sbjct: 61 CEIARNAEGCHWCVMFKHGRLRRQRCALIRKDGIPVQIVKNASVLKDGEGQIIGAVETIT 120 Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + + +S + + ++G M+ L LI S + V++ GESG Sbjct: 121 DITDLTTKESLIASYRQELDAQDRFYGMIGASAPMQALFELIRNAGQSDAPVIIFGESGA 180 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE++A+AIH+ R P+I +NCAA+ E LLESELFG+VKG+FTGA + + G +AA Sbjct: 181 GKELIAKAIHEAGSRSQFPYIKVNCAALNESLLESELFGHVKGSFTGAHRD-REGRFEAA 239 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + G +FLDEIGD+PL Q KLLR +E + + +G PIQVD+RIISATN++L I++G Sbjct: 240 DKGDIFLDEIGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISKG 299 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FRED FYR+NVIP+ P LRER+ DI LL F + + G GI+ + ++ L + Sbjct: 300 EFREDFFYRINVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALANY 359 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL + +E+ V ++I+ LP + + D + G Sbjct: 360 NWPGNVRELKSALEFAF-VSCHEDLIEPRHLPAPI-----AAEPDCAPPQPVPVQSRGPG 413 Query: 545 GTALEEMEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYEL 589 G L+++++ + +AL S ++ + A LGI +++ ++K+Y+L Sbjct: 414 GATLDQVKRTRLIDALTSAKGNQSEAARILGISRTSVWAQVKRYQL 459 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 137/346 (39%), Positives = 202/346 (58%), Gaps = 4/346 (1%) Query: 245 QLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGT 304 + + + + + + ++G M+ + + ++ + S+++++GESGT Sbjct: 129 KAVEKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGT 188 Query: 305 GKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAA 364 GKE+VA+AIH RR KPF+AINC AIP +LLESELFG+V+GAFTGA A+ KTG Q A Sbjct: 189 GKELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVAD-KTGKFQQA 247 Query: 365 NTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEG 424 + GT+FLDEIG MPL LQ KLLR ++ +E+ +G+S I++D+R+ISATN NL + + +G Sbjct: 248 HQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQG 307 Query: 425 KFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKH 484 +FR DL+YRLNVIPI LPPLRER+EDI LL YFL + I P + L + Sbjct: 308 RFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENY 367 Query: 485 RWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAG 544 WPGN+REL N++E V + I + LP N+ + ++ S Sbjct: 368 HWPGNVRELENVIERTVTL-TDSIAIGKSDLPANISGSCCEDEDPQISCPRLTES-GMDM 425 Query: 545 GTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 + +E+ +I+ A+ K + A L I TL KIK+ + Sbjct: 426 PEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2X5_DESRD Length = 525 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 248/506 (49%), Gaps = 26/506 (5%) Query: 104 ILQDRCVGVISLIAVTHEQQ-----EHISDNLREFSDYVRHISTI--FVSKLLEDQGPGD 156 +L + + ++S+ + E +++L D +R + I + P + Sbjct: 21 MLGEDSINILSMEVDASGDRTFVYFETQAEDLCSSDDLMRRLKEIPGLLEISTIRTMPQE 80 Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNF 216 + +++++ G++ +D+ R+ N+ A G IIG+PI+ L S Sbjct: 81 KRERSLEVILNSVSDGIVAIDEHRRIIVANRVARNIFGCKDPEIIGRPIQALNLPDLSML 140 Query: 217 THGHMQHIVSWDDKSELIIGQLH-------------NIQGRQLFLMAFHQSHTSFSVANA 263 + + K + G H I G + + + Sbjct: 141 ECLRGKRYHNVPRKCQTPAGLFHFFASAQPFKDSNGRIVGAVEVMKDMKEIKQLANFVAD 200 Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 P E ++G+ + ++A S + + + GESGTGKE+ A+AIH SG + Sbjct: 201 PARITFEDIIGKSPAITSAIAFAKQVARSNAVISIRGESGTGKELFAQAIHHASG-LSGL 259 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+ INCA +PEQLLESELFGY G+FTGA GK GL + A GT+FLDEI +MP QA Sbjct: 260 FLPINCATLPEQLLESELFGYEGGSFTGADKQGKVGLFEKAKDGTIFLDEIAEMPPNCQA 319 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR I+ R + IG S+ I ++ RI++AT++NL + + FR+DL+YR+NV+PI LP Sbjct: 320 KLLRVIQERRVRRIGGSAEIPINARIVTATSKNLESMVRDNLFRDDLYYRINVLPIYLPA 379 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LRER EDI LL +FL +L + + +E L H WPGN+REL N++E + Sbjct: 380 LRERLEDIPLLAEHFLFQLNYKLNKGHQLLTKGALEKLSGHAWPGNIRELRNVIERAAIL 439 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 + ++ +L + Q + L+ +E++++++AL R Sbjct: 440 GGANQISQ-----ECILFSFEVGQRQEDPGGVYPSCSVEGLRDQLDSLERKLLQQALDRT 494 Query: 564 NSKKQVADELGIGIATLYRKIKKYEL 589 S +Q A +L I + L K++K++L Sbjct: 495 ASIRQAARQLRISHSALLNKMRKHKL 520 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 240/454 (52%), Gaps = 25/454 (5%) Query: 151 DQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPL 210 PG + + ++ D + +++ D E + VN A K G+ + ++GK + Sbjct: 3 KLTPGWQRTSVLESVFDQLSDALVLYDPEFCITGVNHAAEKLFGMSSDEMLGKHCQEIFK 62 Query: 211 TFESNFTHGHMQ-------------HIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 G + + + + L++ + + + L + Sbjct: 63 CSVCEPNCGVLVGLNQPLASANCTVRLHTPNGMERLVVMRTNQMFDDAGHLTGVVATIKD 122 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSS-VMVVGESGTGKEVVARAIHKL 316 + AP + +++ E MR++ + R++ S ++ +++ GE+GTGK++VA+ +H Sbjct: 123 ITEEAAPQK---REVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKDLVAKTLHYQ 179 Query: 317 SGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGD 376 S R+ +PFIAINCAAIPE LLESELFGY KGAFT A A K G+ + A+ GTLFLDEIG+ Sbjct: 180 SVRQAEPFIAINCAAIPETLLESELFGYEKGAFTDARAQ-KRGIFELADKGTLFLDEIGE 238 Query: 377 MPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436 +PLMLQAKLLR +E + +G I +D+R+I+ATN+NL + + EG FR+DL++RLNV Sbjct: 239 IPLMLQAKLLRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQDLYFRLNV 298 Query: 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNL 496 I I +PPLRER EDI + +F+ + R+ G+ ++L H WPGN+REL N Sbjct: 299 IQILIPPLRERPEDIVPMTKFFIEHYNRKFKRQIEGVTDSAAKLLMAHDWPGNVRELRNA 358 Query: 497 MEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI 556 +E + + G I + LP ++ E G +LE+ E+ ++ Sbjct: 359 IERSMIL-EEGAYITAASLPISISRPENGLPLGNAAGMELPTD-----GLSLEDNERSLL 412 Query: 557 REALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 AL + ++ Q A L I TL K+KK+ L Sbjct: 413 VRALEKTEGNQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 246/488 (50%), Gaps = 38/488 (7%) Query: 116 IAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI-FATMIDNMDQGVL 174 +A E + F + R I + L ++ K +IDN+ +GVL Sbjct: 104 VADPAEAVGDLEGQRVAFREAARIIKDLVHDLLNRGYYASFSLYKANIERLIDNLHEGVL 163 Query: 175 VVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR-----------------PLTFESNFT 217 D ++ F ++ A + G+ ++IGK P TF+ Sbjct: 164 AHDLGRKIFFFSKGAERITGLSAVDVIGKNCHDVFVPRLCGENCSFCDGCEPPTFQKKSY 223 Query: 218 HGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSV--ANAPDEPHIEQLVGE 275 I + ++ + L + GR ++A T+F E ++G Sbjct: 224 STVAPEIEGQRKELDVTVVPLRDPAGRIQGVVAALADQTAFKEAVRGQKGEDGFAGIIGR 283 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 MR L I ++ V + GE+GTGKE+VARAIH S RRN PF+ INC A+PE Sbjct: 284 TPEMRSLFHQIRDLSVYDVPVNISGETGTGKELVARAIHGESTRRNGPFVPINCGALPEG 343 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 L+ESELFG+V+G+F+GA + K G + A+ GT+FLDE+ ++P+ Q KLLR ++ + Sbjct: 344 LVESELFGHVRGSFSGAVRD-KKGRFELAHNGTIFLDEVAELPMSTQVKLLRFLQEGVLE 402 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 +G+ VD+R+ISATN+NL + +A+G FREDL+YRLNV+PI LPPLR R+ DI LL Sbjct: 403 KVGSEKQTSVDVRVISATNKNLKKEVAKGTFREDLYYRLNVVPIHLPPLRMRKNDIPLLA 462 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +YF+ + I D + +L ++ WPGN+REL N++++LV SG I + L Sbjct: 463 NYFVRHAAMGARTGNVTITDDAMGLLAEYAWPGNVRELQNIIQFLVI-KASGNKITAAHL 521 Query: 516 PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELG 574 PP + D T + + + ++E AL++ +K + A LG Sbjct: 522 PPEIQG-------DGTPLPQKRGRRNKLDTGSVET--------ALAKAGGNKAKAARLLG 566 Query: 575 IGIATLYR 582 +G ATLYR Sbjct: 567 VGRATLYR 574 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 143/460 (31%), Positives = 225/460 (48%), Gaps = 42/460 (9%) Query: 153 GPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTF 212 + + ++ ++ V + RV +N L L + + G+ + + Sbjct: 131 DELQRLRAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGEW 190 Query: 213 ESNFTHGHMQHIVS--------------------WDDKSELIIGQLHNIQGRQLFLMAFH 252 ES + S ++ + + G+ + G L L Sbjct: 191 ESQLGDVLRHALESRQRVPRRRVNITVDEGASQVFEVSASPLRGETGDYLGAVLVLRDIS 250 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + AP E LVG M+++ L+ +AP+ ++V+V GESGTGKE+VA A Sbjct: 251 RLAACCPPGGAPGEWG---LVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEA 307 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 +H R P I +NCAA+PE LLESELFG+V+GAFTGA + + G Q A+ GT+FLD Sbjct: 308 LHNAGPRATGPLIKVNCAALPETLLESELFGHVRGAFTGALRD-RVGRFQLAHGGTIFLD 366 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIGD+ +Q +LLR ++ RE +G + +VD+R+I+AT++NL + +A G FREDL+Y Sbjct: 367 EIGDLSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYY 426 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RL V+ + +PPLRER ED+ LL +F+ + ++ G L H WPGN+RE Sbjct: 427 RLRVVELHMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRE 486 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEME 552 L + +E+ + GE ID LPP++ + Sbjct: 487 LRHAVEHGFILC-KGERIDLADLPPDVQGTEASVFPRAERSGVHEA-------------- 531 Query: 553 KQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELLN 591 +REAL + +K + A LG+ TLYRK+ +Y + + Sbjct: 532 --AVREALKKAGGNKARAARLLGVARQTLYRKLAEYGIRD 569 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 144/385 (37%), Positives = 218/385 (56%), Gaps = 16/385 (4%) Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGE 275 G +I D++E+ + ++ R L + ++ D ++GE Sbjct: 96 LKTGAFDYITKPFDQNEVRVVVKKALRTRDLASADATRDVSAAQPRGGSDRFG---IIGE 152 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 +++L ++ R+A +P++V++ GESGTGKE+VARA+H+ SGRR++PFI +NCAAIP+ Sbjct: 153 SPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCAAIPKD 212 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 L+ESELFGY +GAFTGA A+ K G + A+ GTLFLDEIG++P +Q KLLR ++ E Sbjct: 213 LMESELFGYERGAFTGAVAS-KPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESEFE 271 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 +G I VD+R+++ATN++L + IA G FREDLFYRLNV+PI LP LR+R+ DI L Sbjct: 272 RVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPHLC 331 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +F+ RL I P+ +E L H WPGN+REL N++E + + G I L Sbjct: 332 AHFVAKFNARLKKSIESIEPEALERLASHAWPGNIRELENVVERAL-LFADGARIRLDDL 390 Query: 516 PPNLLNNGTT----------EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HN 564 P + T+ +D + L + A+ ++E+ +I AL + H Sbjct: 391 PEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHG 450 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 + A L I L K+K+ L Sbjct: 451 NVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 145/456 (31%), Positives = 230/456 (50%), Gaps = 30/456 (6%) Query: 145 VSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP 204 +L + ++ ++ VL VD ++R+ VN + + L ++G+P Sbjct: 190 AIELARVARLEAGRYEQLNGVLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAMVGQP 249 Query: 205 I-------RFRPLTFESNFTHGHMQHIVSWD--------DKSELIIGQLHNIQGRQLFLM 249 + RP + + D + ++G + Sbjct: 250 LDRLRPELTLRPTLDTGQPESAGLLRLGGRDWLANRMPIRERGAVVGAALTLYDAGRIHE 309 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 A + +L+G + R R A + +V++ GESG GKE+ Sbjct: 310 ADTSLRVQQRRRQNTAKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKELF 369 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A+AIH S R ++PF+A+NCA+ PE LLESELFGY +GAFTG+ GK GL +AA+TGTL Sbjct: 370 AQAIHNESRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTL 429 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDEIGDMPL LQ++LLR ++ RE+ +GA++ I VD+RII+AT+Q L+ +A+ +FR+D Sbjct: 430 FLDEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQD 489 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP--GIAPDVVEILRKHRWP 487 L+YR+N + + +PPLRER +DI+ L+ + RRLG+ G+ + LR++ WP Sbjct: 490 LYYRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPWLPRLRRYAWP 549 Query: 488 GNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTA 547 GN+REL N+ E + + P + + D E+ EA ++ G + Sbjct: 550 GNVRELENISERMAVFLMQ--------YPHAADVDHDALRHDCPELFEAGAAVAADEGRS 601 Query: 548 LEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYR 582 ++ AL +Q A LGI +TL+R Sbjct: 602 ----QRDRALRALEACGGNRQEAARRLGISRSTLWR 633 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 215/366 (58%), Gaps = 10/366 (2%) Query: 235 IGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 I + + + +++ S + PD ++G+ ++++ ++I ++A +PS Sbjct: 100 ITKPFDQAELSSVVAKAAKTNESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPS 159 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE++A A+H S RR+KPFI INCAAIP LLESELFGY +GAFTGA Sbjct: 160 TVLITGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVT 219 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 + K G + A+ GTLFLDEIG++P+ +Q KLLRAI+ E +G +VD+R+++ATN Sbjct: 220 S-KPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATN 278 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++L I G+FR+DL+YRL V+PI+LP LRER+ D+ +L +F+ + RRL GIA Sbjct: 279 RDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIA 338 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQS------ 528 D + +L+ + WPGN+REL NL+E V + G +I + LP + + Sbjct: 339 DDAMALLQGYAWPGNIRELENLIER-VLLFADGPLITARDLPEPVRQGTGVQAGANLASA 397 Query: 529 -DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK-KQVADELGIGIATLYRKIKK 586 +V + L D E+E+ +I + L + A L I +L K+K+ Sbjct: 398 VASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKE 457 Query: 587 YELLNT 592 + L +T Sbjct: 458 FGLRDT 463 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 144/348 (41%), Positives = 209/348 (60%), Gaps = 17/348 (4%) Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + +F + D + +VG+ + M++L LI ++A ++V+V GE+G Sbjct: 117 QNVFERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETG 176 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+VAR IH N PF+ I+CAA+PE LLESELFG+ +GAFTGA+ K G I+ Sbjct: 177 TGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ-KKGQIEL 235 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEIG++PL LQ K LR ++ +EI+ +G + +VD+RII+ATN++L IA Sbjct: 236 AHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAA 295 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G++REDLFYRLNVI I +PPLRER++DI LV++FL + + G G+ +V+E+ Sbjct: 296 GQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMA 355 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E V + G+ I + LPP L S Sbjct: 356 YDWPGNVRELENVIERAVVLCM-GDSIAMSCLPPKLQERSAPAPS--------------T 400 Query: 544 GGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELL 590 G L EMEK++I + L + ++ A ELGI L K+K + LL Sbjct: 401 DGVNLMEMEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMKHHGLL 448 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 160/596 (26%), Positives = 281/596 (47%), Gaps = 48/596 (8%) Query: 24 LASVLQLEVEIVDENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPL 83 + V ++E E++D + + + N++ L + + K + Sbjct: 14 IPEVKKVE-EVMDTKFTTIDEDTRIEDAIKEMIKSNTKTLMVIDSSDQLKGIISMTDIHN 72 Query: 84 CEGCDSKENCREKAFLGTPVIL--QDRCVGVISLIAVTHEQQEHISDNLREF--SDYVRH 139 K G PV L + + V + + + I N+ + Sbjct: 73 LYEMHKKYE-------GQPVKLIMKKDVIYVNEGLTLDECRDIMILKNIGILPVLRDNKI 125 Query: 140 ISTIFVSKLLED-QGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQN 198 I + + + ++ +I + +G+ +++E V N+ + + Sbjct: 126 IGVLKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSE 185 Query: 199 NIIGKPIR--FRPLTFESNFTHGHMQHIVSWDDKSEL------------------IIGQL 238 +I+G+P+ E + + DK E ++ Sbjct: 186 DIVGRPMNEFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVCTE 245 Query: 239 HNIQGRQLFLMAFHQSHTSFSVANAP----DEPHIEQLVGECRVMRQLKRLISRIAPSPS 294 ++ ++ + + + + + ++++G+ + + K + ++A + S Sbjct: 246 VDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNS 305 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 S+ + GESGTGKEV ARAIH S R+ + FI +NC+AIP +L ESE FGY GAFTGAS Sbjct: 306 SIFIWGESGTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGASK 364 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 G+ G+ + A GT+FLDEI D+PL +QAKLLR ++ +EI +G + I+++ RIISATN Sbjct: 365 KGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATN 424 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 ++L++ + KFREDL+YRLNV+ I +PPLRER+EDI LLVH FL ++ I+ Sbjct: 425 KDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTIS 484 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVS 534 DV++I + +RW GN+REL N +E +V + ID +P ++++ + Sbjct: 485 KDVIDIFQNYRWKGNIRELKNTIENIVVL-SQNSKIDVDDVPSYMMDSTNNSTEEEE--- 540 Query: 535 EAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRKIKKYEL 589 A +++E + I +AL + +K + A L I TLY KI +Y++ Sbjct: 541 -----YPLDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKI 591 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 249/504 (49%), Gaps = 27/504 (5%) Query: 111 GVISLIAVTHEQQEHISDNLREFSDYVRHISTIF------VSKLLEDQGPGDNISKIFAT 164 G +LI+ +H + I + + +S + + + LL++ N + Sbjct: 142 GCDALISGSHANKCVIKNGFKVYSGIIENSEEAIGRALNSAASLLKNMEYEANQMEFLRL 201 Query: 165 MIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR-------------FRPLT 211 + +N+ G++ VDD R+ N + + + GK + R Sbjct: 202 LAENVTDGLIFVDDRERIGIANANVGRIFP-NRRPVAGKGFQESFPFMAKNYLKACREKQ 260 Query: 212 FESNFTHGHMQHIVSWDDKSELIIGQ----LHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 N + ++ D +I G+ + I Q + + + Sbjct: 261 HLDNEIYRTRDMNIAVDFTPVMIGGEYKGMIITIHDIGRLQQREAQIRSKLNEMGLYAKY 320 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 ++ + VM + + A S+V++ GE+GTGKE+VA++IH S R++ PF+AI Sbjct: 321 QFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGETGTGKELVAQSIHNASKRKSGPFVAI 380 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCA+ PE LLESELFGY +GAFTGA GK GL + A+ GTLFLDE+ ++P+ Q KLLR Sbjct: 381 NCASFPENLLESELFGYEEGAFTGAVKGGKPGLFEQAHGGTLFLDEVSELPVSFQGKLLR 440 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ RE+ +G +++D+RII+ATN+NL Q +G FREDL YRL+V+ + LPPLR+R Sbjct: 441 VLQEREVRRVGGKKVVKIDVRIIAATNKNLKQMTLDGLFREDLLYRLDVLNLPLPPLRKR 500 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +EDI LL ++L + + + D + +L + + GN+REL N++E ++V Sbjct: 501 REDIRLLAEHYLMEYKEQFETCADHFTEDAMTLLSSYPFMGNIRELRNIVER-ISVTAQD 559 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SK 566 + + +L G ++ T + A + ++K+ I L +K Sbjct: 560 TAVQVLDVEESL-GLGEYDRQIQTAGQVGRIQDQAAAPAYIRNIQKEEIERLLKECGYNK 618 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 +VA LG+ TL+RK+ K LL Sbjct: 619 SEVARRLGLNRTTLWRKMGKMGLL 642 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 143/508 (28%), Positives = 244/508 (48%), Gaps = 35/508 (6%) Query: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQ 171 V+++++ E + + +++ + + + E Q + + I + Sbjct: 37 VLNVLSAHLETKRVLLSLMQDSGEL--QLVSAIGLSYEEFQSGRYRVGEGITGKIFQTET 94 Query: 172 GVLVVDDENRVQFVNQTALKTLGVVQNNII---GKPIR-------FRPLTFESNFTHGHM 221 ++V D F+ +T+ + +I G PI+ + + + Sbjct: 95 PIVVRDLAQEPLFLARTSPR--QSQDGEVISFVGVPIKAAREMLGVLCVFRDGQSPSRSV 152 Query: 222 QHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQ 281 H V +IGQ + Q + ++ ++G + M++ Sbjct: 153 DHEVRLLTMVANLIGQTVRLYRSVAAERQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQE 212 Query: 282 LKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341 + + + APS S++++ GESGTGKEV+ARAIH LS R++ PFI +NCAA+ E LLESEL Sbjct: 213 VFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESEL 272 Query: 342 FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASS 401 FG+ KGAFTGA + G + A+ GTLFLDEIG++ QAKLLR ++ RE +G S Sbjct: 273 FGHEKGAFTGAQ-GERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSR 331 Query: 402 PIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHL 461 I+VD+R+++ATN++L + +A+G+FR DL+YR+NV+ I +PPLRER+EDI LV +FL Sbjct: 332 SIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEK 391 Query: 462 HTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTL------- 514 ++P ++++ WPGN+REL N +E ++ G++I Sbjct: 392 FRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCVERTATMM-RGDLITEVHFSCQQNK 450 Query: 515 -LPPNLLNNGTTEQSDVTEVSEAHLSL----------DDAGGTALEEMEKQMIREALSRH 563 L L G + V + A G A E++ + A+ + Sbjct: 451 CLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQGQATGAAPPTSERERLIWAMEQC 510 Query: 564 NS-KKQVADELGIGIATLYRKIKKYELL 590 + + A L I + ++K+ + Sbjct: 511 GWVQAKAARALNISPRQMGYALQKFNIE 538 >UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQE7_ALIAD Length = 535 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 227/467 (48%), Gaps = 38/467 (8%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-- 205 L E + + V V D + VN+ A + G+ Q +IG+ + Sbjct: 78 LAERLREMREAYEELELIFSEAFDEVFVTDGDGITLRVNRAAERLYGLRQEELIGRSVFD 137 Query: 206 ----------------------RFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQG 243 T + + ++I I Sbjct: 138 LEREGVFYPSVTGLALKLRRQVTVLQTTSDGKQLWATANPVFDQHGNIRIVISTAKEISD 197 Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 + ++ TS +A ++P +V MR + + R+A + S +++GE+G Sbjct: 198 --VIRPEVMRAETSVGGMDADEQPP--NMVTRSPKMRHVFHIAKRVAGTDISCLLLGETG 253 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 GK +A+ IH++S R PF+ +NCAA+PE LLESELFGY GAFTGA +GK G ++ Sbjct: 254 VGKSTLAQWIHRMSPRHRGPFVEVNCAALPESLLESELFGYESGAFTGALKSGKPGKVEL 313 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 A+ GTLFLDEI ++PL LQ+KLL +E R + IG + VD RII+ATN++L Q + + Sbjct: 314 AHEGTLFLDEIAEVPLHLQSKLLDFVERRVLTRIGGTRMHTVDARIIAATNRDLKQMVRD 373 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FR DL+YRLN I +PPLRER+EDI LV L ++ + P+V+ L+ Sbjct: 374 GLFRADLYYRLNGAEIEVPPLRERKEDIPELVQQLLRRIFDECPTMVKRVHPEVIRRLQA 433 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL +++ LV + G+ I + L ++ T+ + T Sbjct: 434 YTWPGNVRELEHVVRRLVIL-TDGDYILPSDLQDEWIDEETSGVTPCTSRGPLAQ----- 487 Query: 544 GGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELL 590 L ++E+ + +A S ++A+ LG+ AT+ RK+KKY L Sbjct: 488 ----LAQLERNLYADAARHCRSTYEIAEALGVSQATVVRKLKKYGLS 530 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 142/462 (30%), Positives = 240/462 (51%), Gaps = 22/462 (4%) Query: 140 ISTIFVSKLLEDQGPGDNISKIFATMID-----NMDQGVLVVDDENRVQ----FVNQTAL 190 + + E++ ++ + D + ++G+ +VD + V N Sbjct: 1 MKKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRADMVLTDLKLPNMDGQ 60 Query: 191 KTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA 250 + L +++ P+ M+ + + L + + L + A Sbjct: 61 EFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVRA 120 Query: 251 FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + A + +VG M+++ I R+ PS ++V++ GESG GK+++A Sbjct: 121 LREENRELKAA-LGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 RAIH S R+++P + INC AIPE L+ESELFGY KGAFTGA K G + A+TGT+F Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTT-KPGKFEQADTGTVF 238 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIGD+P +Q KLLR ++ RE +G++ +D+R+++ATNQ+L + +G FREDL Sbjct: 239 LDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDL 298 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRLNV+P+ +PPLRER+ DI L ++F+H G I +E L + WPGN+ Sbjct: 299 YYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNV 358 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N++E + + +G +D+ + +S ++ + + G +L++ Sbjct: 359 RELENVIERSLVM-ATGTQLDADDI---------KLESAPRPRAQGNDNHFLPEGLSLDQ 408 Query: 551 MEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYELLN 591 E+++IREAL R +K Q A LG+ L ++ + L + Sbjct: 409 YEQEIIREALRRADGNKSQAARLLGLTRNALRYRLTQMGLES 450 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 142/348 (40%), Positives = 212/348 (60%), Gaps = 12/348 (3%) Query: 244 RQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303 RQ ++ Q +F + + Q+VG + + + LI ++A S ++V+V GESG Sbjct: 117 RQALMVNHLQEEVTFLRSELNKKYG--QIVGNSQAIHDVCGLIEKVADSNATVLVTGESG 174 Query: 304 TGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQA 363 TGKE+ A +IH+LS RR+KPF+ INCAA+PE LLESELFG+ KGAFTGA A K G + Sbjct: 175 TGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVAR-KLGRFEL 233 Query: 364 ANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE 423 AN GTLFLDEI +MPL +Q KLLR ++ +E +G + I++D+R+I+ATN++ + I + Sbjct: 234 ANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRK 293 Query: 424 GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRK 483 G FREDLFYRLNV+PI LPPLRER EDI LL +F+ ++P+ + +L Sbjct: 294 GTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMSPEAMGLLIS 350 Query: 484 HRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDA 543 + WPGN+REL N++E + + G I LP + + E + + Sbjct: 351 YEWPGNIRELQNVIERSIIL-AQGNEIKPHHLPKEIQKLDEVK----NETTHGLIINFPD 405 Query: 544 GGTALEEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 G + +E+EK++I +AL + + ++ + A LGI + L + +KY L Sbjct: 406 DGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 153/492 (31%), Positives = 250/492 (50%), Gaps = 39/492 (7%) Query: 124 EHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQ 183 + + ++ + + K E ++K T+I+ G+++V + R++ Sbjct: 394 DKAIAVYQGLAEVEMCLPYLINEKRSE-LKEIQILNKEMDTLINFSCDGLVMVSKDGRIE 452 Query: 184 FVNQTALKTLGVVQNNIIGK------------------------PIRFRPLTFESNFTHG 219 VN + L +G + ++IGK I T + Sbjct: 453 RVNHSYLNMVGFKRQDLIGKRVEELEKERYIYPSVASLALKEKRNITLVENTSDKKRLLA 512 Query: 220 HMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQ----LVGE 275 + + + E ++ + N+ + + + + E ++ Sbjct: 513 TANPVFNENGDLEWVVVNVRNLDLINDEKDKEKEKLKKYLDNAPQLDNNPEGNTGHIIVS 572 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 M+ + +IA + S+V++ GESG GKEVVAR IH+ S R + F+ INCAAIPE Sbjct: 573 SDEMKNILMTCRKIAGTDSTVLITGESGVGKEVVARYIHEQSPGRQE-FVKINCAAIPES 631 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 LLESELFGY GAF+GA GK GLI+ A+ GTLFLDEIG+MPL +QAKLL+ ++ R++ Sbjct: 632 LLESELFGYETGAFSGAKRAGKPGLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLT 691 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 IG P+++D R+I+ATN++L Q + + FR+DLFYRLNV+P+ +PPLR+R EDI L+ Sbjct: 692 RIGGVKPVKIDFRLIAATNRDLRQMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLI 751 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 YFL + + + D E+L + WPGN+REL+NL+E LV +D ++ Sbjct: 752 KYFLDQYCEKYNKQIK-LTRDAEELLLSYSWPGNVRELTNLIERLVVTCEE-SFVDRNII 809 Query: 516 PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGI 575 + + + E ++ A+ +EK+++ A S+ NS +A LG+ Sbjct: 810 IEYI-------DNPEVKTPEILINKIMPLPEAVARVEKKLLSMARSKGNSTYDMAKLLGV 862 Query: 576 GIATLYRKIKKY 587 +T+ RK+ KY Sbjct: 863 NQSTVVRKLHKY 874 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 154/516 (29%), Positives = 254/516 (49%), Gaps = 20/516 (3%) Query: 86 GCDSKENCREKAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFV 145 ++ E +I + + + + E H S Sbjct: 120 EIPKLDSFHEFENTIKKLIDDGIEIFIGGKTTKEITSKYNKPCIETEVEKSSIHASINEA 179 Query: 146 SKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI 205 L + I +++ G++ +D + F+N A + L + I + Sbjct: 180 IHLYNIGIEKRINNSITEEILECTHSGIIAIDKNHSPLFINNQAKRLLFNQVDKFIKDYL 239 Query: 206 RFRPLTFESNFTHGHMQHIVSWDDKS-----------ELIIGQLHNIQGRQLFLMAFHQS 254 + H +I+S+ S +L G + IQ + + Sbjct: 240 TSDDILDSLKNGHSLCNNIISFKGLSLTFDCFPIIIDKLHFGCVATIQDIENIQSTEKEI 299 Query: 255 HTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIH 314 S + + ++G + + + A S S++++ GESGTGKE+ A++IH Sbjct: 300 RESLISKSHCAKSTFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIH 359 Query: 315 KLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEI 374 S R N PF+AINCAAIPE +LESELFGYVKGAFTGA GK G+ + A+ GT+FLDEI Sbjct: 360 NYSNRFNGPFVAINCAAIPENILESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEI 419 Query: 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRL 434 G++ +Q KLLR ++ RE+ IG + + +++R+I+ATN+NL + I FREDLFYRL Sbjct: 420 GEISKDVQVKLLRVLQEREVTRIGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRL 479 Query: 435 NVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELS 494 V+ + LPPLRER+EDIE L + + + + I+ +++L ++ +PGN+R+L Sbjct: 480 CVLKLDLPPLRERKEDIEQLTYSIISHYNK-----PVSISDSALKLLSRYDFPGNIRQLK 534 Query: 495 NLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 N++E LV + V L ++L + + D+ + + S + + + EK+ Sbjct: 535 NIVERLVVMCDDNFV--DEHLVSDILISEPHFRKDINLIPAINYSPVLSDNKIV-DYEKK 591 Query: 555 MIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589 +I E L ++N K A++LGI TL+RK+KKY+L Sbjct: 592 LILETLEKNNGVKSITANQLGISTTTLWRKLKKYKL 627 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 243/469 (51%), Gaps = 13/469 (2%) Query: 123 QEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRV 182 + I D+ + ++ + ++ D + + D + + + D + Sbjct: 3 KVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGI- 61 Query: 183 QFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ 242 + + ++ I P+ + M+ L + +L Sbjct: 62 --------EVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAV 113 Query: 243 GRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + + + + ++ +G+ R M+ + + I ++ S +V++ GES Sbjct: 114 QKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGES 173 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKEVVAR IH S R ++PFI INCA IPEQL+ESELFG+ KG+FTGA + K G + Sbjct: 174 GTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQ-KAGKFE 232 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 A+ G +FLDEIG++PL QAKLLR ++ +E +G + I+VD+RI++ATN+NL + Sbjct: 233 IAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQ 292 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 EGKFREDL+YRLNV+ + LPPLRER+EDI LL++YF+ R+ GI+ + + Sbjct: 293 EGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAE 352 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 K+ WPGN+RE+ N+ E V + V+ +P + N + + Sbjct: 353 KYAWPGNVREIKNVCEQAVVM-ARNSVLMLDDMPL-IGNGNGFLEFKNNAKISLDTNDKR 410 Query: 543 AGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYELL 590 + + E+EKQ+I ++L+ +N +Q A LG+ +LY K+K+Y+LL Sbjct: 411 SLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDLL 459 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 152/422 (36%), Positives = 230/422 (54%), Gaps = 11/422 (2%) Query: 173 VLVVDDENRVQFVNQTALKTLGVVQNN-IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKS 231 V+V D + + + + ++ G + I Sbjct: 75 VVVTDLRMVPVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPD 134 Query: 232 ELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAP 291 L +I+ + A + ++ LVG MR++ + ++A Sbjct: 135 VLRARVEKSIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVAS 194 Query: 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351 + ++V+V+GESGTGKE+VARAIH S RR +PF++I+CAAIPE LLESELFG+ KGAFTG Sbjct: 195 TGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTG 254 Query: 352 ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIIS 411 A K G + AN GTLFLDE+G++P +Q KLLR ++ R+ +G ++VD+R++S Sbjct: 255 AIRR-KLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVS 313 Query: 412 ATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP 471 ATN+NLAQ + G+FREDL+YRLNV+PI LPPLR+R D+E L +F+ R+ Sbjct: 314 ATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVT 373 Query: 472 GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT 531 G+AP+ +E+LR+HRWPGN+REL N++E + GE++ LP + V Sbjct: 374 GLAPEALELLRRHRWPGNVRELENVIEQALVF-AEGELVRPRDLPEGVRKAPPAPSLPVP 432 Query: 532 EVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYELL 590 S D + LE++E+Q+I A + K + A LGI + LY K++KY ++ Sbjct: 433 -------SGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGIV 485 Query: 591 NT 592 Sbjct: 486 KA 487 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 144/522 (27%), Positives = 235/522 (45%), Gaps = 63/522 (12%) Query: 117 AVTHEQQEHISDNLREFSDYVRHISTI--FVSKLLEDQGPGDNISKIFATMIDNMDQGVL 174 T E + ++ L + + + + VS +L+ + + + D + Sbjct: 42 CFTGECRVNVLQILFRINQVLTQNADLATLVSIILDGMRQQMRMQRGVMMLYDRHSDAIF 101 Query: 175 VVDDENRVQF-----VNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDD 229 + D + + G V GKPI + +F H Sbjct: 102 IHDSFGLTEEERGRGIYAPGEGITGKVVE--TGKPIIIPRVIDSPDFLDRTRAHNKGRKQ 159 Query: 230 KS----------------------------------------ELIIGQLHNIQGRQLFLM 249 +I + + Sbjct: 160 DKLAFFCVPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVDK 219 Query: 250 AFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVV 309 ++ + ++G + M+++ ++ ++A + ++V+++GESG GKE+V Sbjct: 220 VRLETENRRLKSELKQRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELV 279 Query: 310 ARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTL 369 A A+H S + PFI NCAA+PE L ESELFG+ +GAFT A A K G + A+ GT+ Sbjct: 280 ASALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHK-GYFEQASGGTI 338 Query: 370 FLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429 FLDE+G++ L QAKLLR ++ R +G + P++VD+RII+ATN+NLA+ +AEG FRED Sbjct: 339 FLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFRED 398 Query: 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGN 489 LFYRLNV PIT+PPLR+R D+ L +F+ ++ +G I+ + +L + WPGN Sbjct: 399 LFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGN 458 Query: 490 LRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE 549 +REL N++E V + G VI LPP+L E + Sbjct: 459 VRELENVIERSVILAEEG-VIHGYDLPPSLQTPT-----------ETGTGFSGTLEDRVT 506 Query: 550 EMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 +E +MI EAL + + Q A LG+ L +++++ L Sbjct: 507 AVEYEMIVEALKASNGNVGQAATTLGLTRRMLGLRMERHGLT 548 >UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Exiguobacterium RepID=B1YLR1_EXIS2 Length = 551 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 141/487 (28%), Positives = 227/487 (46%), Gaps = 34/487 (6%) Query: 128 DNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQ 187 L + Y + + + ++ +I + + V + +N Sbjct: 74 GVLEQLIHYFPEAAVLPGEFVRVLLERLAEKERMLEAIIHCTSEAISVANQAGETMLINP 133 Query: 188 TALKTLGVVQNNIIGKP----IRFRPLTFESNFTHGHMQH------------------IV 225 + G + ++IGKP I + G V Sbjct: 134 AYTRMTGYTEGDVIGKPASADIGMQESVHLRVLETGESVRDARMKIGQDRRDIIVNAAPV 193 Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 D + +G + +I + + + + ++ E MR + Sbjct: 194 VVDGQVRGSVGVIRDISEMKALTKELKAAKQKI--RTLEAKYTFDDIIAESESMRFVVDQ 251 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 A P +V++ GESGTGKE+ A AIH S RR + F+ +NCAAI LLESELFGY Sbjct: 252 AKLAATMPVNVLIRGESGTGKELFAHAIHAASDRRYEQFVRVNCAAIAPSLLESELFGYE 311 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 +GAF+GA GK G + A+ G+LFLDEIG++PL +QAKLLR ++ E++ +G + + V Sbjct: 312 EGAFSGARRGGKRGYFEEAHGGSLFLDEIGELPLDVQAKLLRVLQENEVVRVGGAKAVPV 371 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+RII+ATN NL Q I G+FREDL+YR+N +PI +P LRER +D+ L + L + Sbjct: 372 DVRIIAATNANLEQKIITGEFREDLYYRINRLPIHIPALRERPDDLAPLSTHLLRKLNQS 431 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGT 524 G ++ D +E +R+ W GN+REL N++ + E V+ L Sbjct: 432 YGRSVERVSEDALEAIRQQTWKGNVRELENVIGRALIFTDKTEQVLRKGHL--------Q 483 Query: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADELGIGIATLYRK 583 ++ SE + +E+Q+IREAL + +K + A +LGI + LY K Sbjct: 484 LVSPTPSKRSERPKKEIKHLSDEMSYVEEQLIREALDVVNGNKTEAAKQLGISLRALYYK 543 Query: 584 IKKYELL 590 ++++ + Sbjct: 544 VERFNIQ 550 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 154/444 (34%), Positives = 230/444 (51%), Gaps = 24/444 (5%) Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRP----LTFESNFT 217 +++ +G+ V D + + N+ ++ + + + L + Sbjct: 119 LNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPWTNLQQAIDRG 178 Query: 218 HGHMQHIVSWDDKSELIIG----------QLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 ++S D ++ ++ + + Sbjct: 179 KTFSTEVLSPDGQALRLVFLPIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQQGTARY 238 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 I +VG +++ + K L +R A S S+V++ GESGTGKE+ A AIH +S RR F+ + Sbjct: 239 SINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRKGSFVKV 298 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+PE LLESELFGY +GAFTGA GK G + AN GT+FLDEI DM L +QAKLLR Sbjct: 299 NCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSMQAKLLR 358 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ +E+ IG+ S +V+IR+I+ATNQNLA+ ++E KFREDLFYRLNVI + L PLR+R Sbjct: 359 VLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNLLPLRQR 418 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 +DI LL H+ LH + LG+ I P+V++ + WPGN+REL N +E VN G Sbjct: 419 VDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAVNFC-EG 477 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSK 566 I +P N++ S S + L + EK +I E L +K Sbjct: 478 NTITINDIPDNIIQRKNHYSSTTGSHS--------SLDNILGKQEKALIEEVLKNCGGNK 529 Query: 567 KQVADELGIGIATLYRKIKKYELL 590 + A L I + LYRK+ KY++ Sbjct: 530 SKAAKTLNIHRSVLYRKLHKYDIK 553 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 154 PGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE 213 + + ++ N+D+G+L+ D + F N+ A K LG+ N I+G+ + Sbjct: 6 ELHSHDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLKPHLT 65 Query: 214 SNFTHGHMQHIVS 226 + + IV Sbjct: 66 FDNIIKDQRRIVK 78 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 142/456 (31%), Positives = 227/456 (49%), Gaps = 39/456 (8%) Query: 163 ATMIDNMDQ---GVLVVDDENRVQFVNQTALKTLGVV--------QNNIIGKPIR---FR 208 ++ + V+V D Q + G+ Q + +G + Sbjct: 39 EEALEILRDNEVAVIVTD---------QRMPRMTGLELLLKAAEIQPDAVGIILTAYTDL 89 Query: 209 PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFH-----QSHTSFSVANA 263 + ++ +++ + EL H ++ L + +T + Sbjct: 90 DVLVDAINLGQIYRYVTKPWEAKELRGILTHALERYALLRENQRLMAQLREYTGYLNQEI 149 Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 ++G+ + ++ + ++AP+ S+V++ GE+GTGKE+VA AIH S R N+P Sbjct: 150 HGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQP 209 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 F+ +NCAA+ +LESELFG+ KGAFTGA A + G + A+ GTLFLDE GD+P+ +Q Sbjct: 210 FVRVNCAALAPGVLESELFGHEKGAFTGAVAQ-RPGRFELADGGTLFLDECGDLPMEVQI 268 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLRA++ RE +G + I+VD+R+ISATN++L I G FREDL+YRLNV PI LPP Sbjct: 269 KLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPP 328 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LR+R ED+ LV +F+ R + PG+ ++ LR + WPGN+REL N++E + + Sbjct: 329 LRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMIL 388 Query: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTE--------VSEAHLSLDDAGGTALEEMEKQM 555 G +D+ L T S L + E++ Sbjct: 389 -ARGRELDADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERRE 447 Query: 556 IREALSRHNSK-KQVADELGIGIATLYRKIKKYELL 590 I A+ + N+ A LGI +TLY +++K+ L Sbjct: 448 IIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLE 483 >UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Tax=Clostridia RepID=A0Q2I8_CLONN Length = 659 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 152/588 (25%), Positives = 273/588 (46%), Gaps = 77/588 (13%) Query: 37 ENLCRVAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREK 96 + L V G + +G G + L ++T + C C Sbjct: 111 KELNFVKGALWNEEVVGTNAIGTAIYLDKPIQT--------IGAEHYCI-EQHSWTCS-- 159 Query: 97 AFLGTPVILQ-DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPG 155 G P+ + +G I++ + H + + ++ + VS Sbjct: 160 ---GAPIHNEEGEVIGCINMSGNYYNAHPHTLGIVTSAAQSIQKQLAVAVS--------- 207 Query: 156 DNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII-------------- 201 S + +++ +G++V++ +++ VN A + L + +I Sbjct: 208 ---SNLMNITFNSISEGIIVLNKNMKIKKVNGRAAQILNSNIDKLINTDIKDIVKDIDFE 264 Query: 202 ----GK-----PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQ---------G 243 GK I + + + ++ +I + +I G Sbjct: 265 AIISGKYKSFNSIERNFCVKRDEIQIDDKIYKENIKNINKKVIPCILDIIPMKVHEKVIG 324 Query: 244 RQLFLMAFHQSHTSF-SVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGES 302 + Q H V + + ++ + + M+++ +IA + ++++ GES Sbjct: 325 IVITFTETGQIHKLVNKVIGYKAKYTFDDIITQNQSMKKMIERAKKIALNDCNILIEGES 384 Query: 303 GTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQ 362 GTGKE++A++IH S R+ PF+AINCA+IP +L+ESE FGY KGAFTGAS G TG + Sbjct: 385 GTGKELIAQSIHNYSKRKTGPFVAINCASIPRELVESEFFGYEKGAFTGASKEGYTGKFE 444 Query: 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIA 422 AN GT+FLDEIG++PL +Q+KLLR ++ +I +G + Q+++R+I ATN+ L + I Sbjct: 445 LANGGTIFLDEIGELPLDVQSKLLRVLDNNKITRVGGNYEKQLNVRVIGATNRKLKEEIK 504 Query: 423 EGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILR 482 + FR D++YRL+V+ I PL +R++DIE+LV+YF+++ + ++ ++ L Sbjct: 505 QKNFRADVYYRLSVMNIKTIPLNDRKDDIEILVNYFINILDMKNNRKSEKVSKSYIKKLL 564 Query: 483 KHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDD 542 H W GN+REL N++E + E+++ S E + ++ Sbjct: 565 SHSWGGNVRELRNVIERDYYLNDIDELLE----------------SVKDEKENSDKQIEK 608 Query: 543 AGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 G +++ +E + I+ AL +K + L IG +TLYRKIKKY + Sbjct: 609 IGINSMDMVESEAIKNALKECNGNKVKACRLLNIGRSTLYRKIKKYNI 656 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 154/457 (33%), Positives = 229/457 (50%), Gaps = 17/457 (3%) Query: 146 SKLLEDQGPGDNISKIFATMIDNMD--QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 +++ E + I + Q VL D+ R+ VN G V N ++GK Sbjct: 106 AEVAERNRNLEEALLASLPYIAKVAGGQAVLFDDEGKRLNAVNSK-----GDVNNQLLGK 160 Query: 204 PIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANA 263 ++ +S + I + +Q Sbjct: 161 VSEAAKECMKAQKPVLGKSTFISGASAVRIPITKEIGFGFNNEDTALKNQKLLEEVKKYQ 220 Query: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 + + ++GE + MR+ K L A S SSV++ GE+GTGKE+ A++IH S R +KP Sbjct: 221 TAKYNFTDIIGESQQMRKAKELGEAAASSDSSVLICGETGTGKELFAQSIHNASYRCSKP 280 Query: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 FIAINCAA+P L+ES LFGYV+GAFTGA G TG+ + AN GTLFLDEI +M L LQ+ Sbjct: 281 FIAINCAALPPSLIESNLFGYVEGAFTGAKKGGATGVFEKANNGTLFLDEISEMDLDLQS 340 Query: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 KLLR ++ +E+ IG I +++RII+ATN+NL I +G+FR DLF+RLNVI + LPP Sbjct: 341 KLLRVLQEKEVTRIGGRKVIPLNLRIIAATNRNLEDMIQKGQFRRDLFFRLNVIEVKLPP 400 Query: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 LR+ +EDI LLV+ + G G+ + +E+L + WPGN+REL N +E N+ Sbjct: 401 LRDMKEDIPLLVNETIIKMNSIFGKAIKGVDKEALEMLINYDWPGNVRELYNCIERAFNL 460 Query: 504 VPSGEVIDSTLLPPNLLNN---------GTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQ 554 + I L N E ++ ++ + + + + EKQ Sbjct: 461 IGDDNYIRKKHLNFKFNNGNGITAQNYMEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQ 520 Query: 555 MIREALSRHNS-KKQVADELGIGIATLYRKIKKYELL 590 +I L + + A L I ATL+RK+KK + Sbjct: 521 VIEAVLKEVKGIRAKAAKRLNISPATLWRKMKKLNIE 557 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 157/497 (31%), Positives = 249/497 (50%), Gaps = 29/497 (5%) Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDN 168 +G L ++ I+ + + + ++ L+ D I + +++ Sbjct: 145 VIG--GLSVARMAKRFGIAAIMGDADEMAIRLAVEQARHTLKYVLNLDRQYNIVSAILNC 202 Query: 169 MDQGVLVVDDENRVQFVNQTALKTLGVVQNNII---------------GKPIRFRPLTFE 213 ++G+L VD + +N A + LG + + I G+PIR R + Sbjct: 203 ANEGILGVDGSGTIFELNHHAHRLLGCGRGDNINTILPESDSRIAITNGEPIRSRIV--- 259 Query: 214 SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLV 273 N + S D E G + +Q + E +V Sbjct: 260 -NSGKATLIFNASPIDYGENGGGTVLTVQEGDYIQGISQKIRQQHIAKGHVARIRFEDIV 318 Query: 274 GECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIP 333 G+ + + A S SSV+++GE+GTGKE+ A++IH S R +KPF+AINCAA+P Sbjct: 319 GKGEAIHHTIERAKKFALSESSVLIIGETGTGKELFAQSIHNHSRRHSKPFVAINCAALP 378 Query: 334 EQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEARE 393 +LESELFGYV+GAFTGA GK+G+ + A+ G++FLDEIG++P+ +QAKLLR I+ R+ Sbjct: 379 NNVLESELFGYVRGAFTGAKDAGKSGIFELAHGGSVFLDEIGEIPIEMQAKLLRVIQERQ 438 Query: 394 ILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIEL 453 + IG + VD+R+ISATN+N+ + G+FREDL++RLN + + LPPLRER D+ Sbjct: 439 VQRIGDDKLVPVDVRVISATNKNVDNEVKLGRFREDLYFRLNTLELELPPLRERTGDVPT 498 Query: 454 LVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDST 513 L+ +F+ G PD L + WPGN+R+L N +E L NV+ + + Sbjct: 499 LIRHFMGRA----GRREVSFTPDAQRFLNVYSWPGNVRQLGNFIERL-NVLYDQPSMSLS 553 Query: 514 LLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS-RHNSKKQVADE 572 + L S + +L LE+ME+ +I EAL ++++ + Sbjct: 554 EVCDLL--GTAAGASVQGAAQQRPSTLAPDDENVLEKMERDLIAEALDITTGNREKASII 611 Query: 573 LGIGIATLYRKIKKYEL 589 LGI +TL RK K+Y L Sbjct: 612 LGISPSTLGRKKKQYGL 628 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 144/425 (33%), Positives = 225/425 (52%), Gaps = 22/425 (5%) Query: 166 IDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIV 225 I N+ L +D A ++L + + PI F + + V Sbjct: 94 IANLGDEALFLDRTG--------ARRSLNREELAFLCVPI-FYQGRSVGVLSADKLARRV 144 Query: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285 DK I+ + + G+ + A + ++ A ++G +V++++ R Sbjct: 145 EDLDKEVEILSAVAELLGKVVHFRAVEEENSRLRRMLAEARRPTTNIIGRSKVIQEVLRA 204 Query: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345 I ++A + ++V++ GE+GTGKE+VARAIH S R P + +NCAA+P+ LLESELFG+ Sbjct: 205 IDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLVQVNCAAMPDTLLESELFGHE 264 Query: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405 KGAFTGA + G + A GT+FLDE+G++ + QAKLLR ++ RE P+G+S ++V Sbjct: 265 KGAFTGAVTRRR-GRFEEAQGGTIFLDEVGELSPIAQAKLLRVLQEREFQPLGSSRTVKV 323 Query: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465 D+R+I+A+N++L + +A G FR DL+YRLNV PI LPPLRER DI LL YF+ + R Sbjct: 324 DVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRERGPDILLLADYFVLKYARE 383 Query: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTT 525 L I +++L + WPGN+REL N +E V ++ G +DS LPP L Sbjct: 384 LDKDVKRITTSAIDMLMCYHWPGNVRELENCIERAV-LLAGGNAVDSWHLPPTLQMKPVG 442 Query: 526 EQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKI 584 Q+ + E+ +I +AL ++ Q A LG + K+ Sbjct: 443 MQNVS----------RGKLEALVSAFERDLITDALKDVRGNQSQAARLLGTTKRIVQYKV 492 Query: 585 KKYEL 589 +KY + Sbjct: 493 EKYGI 497 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 18/171 (10%) Query: 2 ELATTQSVLMQIQPTIQRFARMLASVLQLE---VEIVDENLCRVAGTGAYGKFLGRQLSG 58 E+A S +++ +Q+ +L+S L +E V ++D G G + Sbjct: 15 EIARVVSRSAELKDQLQQTLDILSSRLGMERGMVSVLDLQ----TGEAWLDVARGVDVER 70 Query: 59 NSRLLR-------HVLETKTEKVVTQSRFDPLCE---GCDSKENCREKAFLGTPVILQDR 108 + R V ++ + + L G N E AFL P+ Q R Sbjct: 71 GTIRYRPGEGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVPIFYQGR 130 Query: 109 CVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNIS 159 VGV+S + E + + S + + + +E++ Sbjct: 131 SVGVLSADKLARRV-EDLDKEVEILSAVAELLGKVVHFRAVEEENSRLRRM 180 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 167/500 (33%), Positives = 253/500 (50%), Gaps = 35/500 (7%) Query: 109 CVGVISLIAVTHEQQEHISDNLREFSD-YVRHISTIFVSKLLEDQGPGDNISKIFATMID 167 +G S+ +E ++ + ++ +L D +T I+ Sbjct: 156 LIGGFSVKRAIEAIRELGLRHIPLMVEPSNISLAIDSALSILSSMERKDEYLTTISTTIN 215 Query: 168 NMDQGVLVVDDENRVQFVNQTALKTLGVVQNNI----------IGK-PIRFRPLTFESNF 216 + VL D + F N+TA + L ++ + IG+ PI + + Sbjct: 216 RISNAVLSFDTSGSLLFSNETAERMLPTLRECLFSGEAESFLHIGRRPIEGKANLHKKQQ 275 Query: 217 THGHMQHIVSWD----DKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 I + S + + + A + S S + H E + Sbjct: 276 ILRLGGKIYVAEYLPVIVSRRLKSIVVIVSSENSIQSAEKRLRLSKSERGYTAKSHFEDI 335 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +GE RV++ L + A S SSV++ GE+GTGKE+ A++IH S R ++PF+AINCAA+ Sbjct: 336 IGESRVLKDTIHLARKYARSQSSVLITGETGTGKELFAQSIHNESSRADEPFVAINCAAL 395 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 P+ LLESELFGYVKGAFTGA+ GK G+ + A+ GT+FLDEIG+M L +QAKLLR ++ R Sbjct: 396 PQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFLDEIGEMDLNVQAKLLRVLQER 455 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 E+ +G I VDIRIISATN+NL + + + FREDL YRLNV+ + LPPLR R D+ Sbjct: 456 EVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLLYRLNVLELNLPPLRSRTGDVP 515 Query: 453 LLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDS 512 LLV+ ++ R PD +E+L + PGN+R+L NL+E +V + G I + Sbjct: 516 LLVNAYMKRQNR-----PVTFLPDAMELLSREPCPGNVRQLFNLLERIVTL-SDGREISA 569 Query: 513 TLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR-HNSKKQVAD 571 + L ++ S L + E+ I AL + H ++ + A Sbjct: 570 SWL------------KNIFSFSGKTEPLPGLLEDTVGNCEQTEIEHALRKNHGNRAKTAK 617 Query: 572 ELGIGIATLYRKIKKYELLN 591 +LGI ATL+RK+KKY L + Sbjct: 618 DLGISTATLWRKMKKYGLFS 637 >UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTF4_9CLOT Length = 670 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 140/482 (29%), Positives = 239/482 (49%), Gaps = 40/482 (8%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK 203 + E + + + +++ ++ VD V +N A + + + +G+ Sbjct: 194 VQKQEREKRKEYEIQLQKHQMLMNYTRDAIINVDARGMVSIMNMEARRMFHLTHS-AVGR 252 Query: 204 PIRFRPLTFESNFTHGHMQHIVSWDDKSELII---------------GQLHNIQGRQLFL 248 IR E + + +V + + + G ++ Q Sbjct: 253 DIRRLLPELEFDELRRTPEQVVGQIIRIQGQLLSVNKIPIVMGGQFEGAIYFFQSVHDIQ 312 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 + + + H E ++G + ++K + A + SS+++ GE+GTGKE+ Sbjct: 313 KSEQRIRLQLHQKGLVAKYHFEDILGISDSLERVKLIARSYAQADSSILLTGETGTGKEL 372 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 A++IH S RRN PF+AINCAA+P+ LL S+LFGY +G+FTGA+ GK G+ + A+ GT Sbjct: 373 FAQSIHNSSPRRNGPFVAINCAALPKDLLSSQLFGYEEGSFTGAAKGGKPGIFELAHGGT 432 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 +FLDEIG++P Q +LLR ++ +E+ + + I +D+R+I ATN+NLA + E +FR Sbjct: 433 IFLDEIGEIPEETQIQLLRVLQEKEVRRLSSDKVIPIDVRVICATNRNLALEVKERRFRM 492 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTR-----RLGSVYPGIAPDVVEILRK 483 DLF+R+NV+ + +PPLRER+EDI LL +FL + R + + G+ P + + Sbjct: 493 DLFFRINVLKLEIPPLRERKEDIPLLADHFLEEYCRGGRLAEVRARMHGLYP----RMME 548 Query: 484 HRWPGNLRELSNLMEYLVNVVPSG--EVIDSTLLP------------PNLLNNGTTEQSD 529 + WPGN+REL + E + ++ G ID+ ++ + Sbjct: 549 YSWPGNIRELQAVTERIAILLDQGFPMEIDAHMMMEEFGYLEGEEGGMGPEPGERPGAEE 608 Query: 530 VTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYE 588 E + A G + E K+ I AL H+ ++Q A LGI +TL+R I+KYE Sbjct: 609 QPEPDRKTEPEESASGRPISECRKEDIIRALKNHHYRRQEAAQALGISRSTLWRLIRKYE 668 Query: 589 LL 590 + Sbjct: 669 IE 670 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 156/461 (33%), Positives = 249/461 (54%), Gaps = 25/461 (5%) Query: 141 STIFVSKLLEDQGPGDNISKIFATMID-NMDQGVLVVDDENRVQFVNQTALKTLGVVQNN 199 + L + ++ + +++ ++ G VD + R V++ + LG+ + Sbjct: 422 KDVVPQTLADQASWKQALADMETWLVEPAINVGQQFVDIQQR-SVVSRFYAEALGLKSSM 480 Query: 200 II-----GKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIG-QLHNIQGRQLFLMAFHQ 253 + GKPI L ++ + D EL + + + R L + Sbjct: 481 YVPIFSKGKPIAALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLE 540 Query: 254 SHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAI 313 ++ + E+++G M+ + I ++AP+ +V+++GE+GTGKE++ARA+ Sbjct: 541 QEKTYLAEEIKTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAV 600 Query: 314 HKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDE 373 H LS RR++P + INCAA+P QL+ESELFG+ +G+FTGA+ + G + AN GTLFLDE Sbjct: 601 HSLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGATEK-RIGKFELANGGTLFLDE 659 Query: 374 IGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYR 433 IG++PL LQAKLLRAI+ +EI +G I ++ RII+ATN+NL Q +A G+FR DL+YR Sbjct: 660 IGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYR 719 Query: 434 LNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLREL 493 LNV PI +PPLRERQEDI L +FL +++LG IA ++ L ++ WPGN+REL Sbjct: 720 LNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITNIANASLQQLLQYPWPGNIREL 779 Query: 494 SNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEK 553 +++E + S + L L T V + SE S+DDA + Sbjct: 780 EHVLERSSILSQSATLT----LAEPLRAATTAFPPFVVQSSEEVKSIDDAM--------R 827 Query: 554 QMIREALSRHNSKKQ----VADELGIGIATLYRKIKKYELL 590 I AL++ ++ + A+ L I TL ++KK + Sbjct: 828 LAILAALAKSGNRIRGTGGAAELLNIKPTTLEARMKKLNIS 868 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 9/330 (2%) Query: 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320 D+ ++++G+ M++L LI ++A ++MV GESGTGKE+V RA+H RR Sbjct: 273 KLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERR 332 Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380 + PF+ +NCAA+P+ +LESELFG+ KGAFTGA + G + A+ GTLFLDEIGDM L Sbjct: 333 DNPFVKVNCAAMPKDILESELFGHEKGAFTGADKK-RVGRFELAHKGTLFLDEIGDMDLS 391 Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440 +QAK LR I+ +E +G + I+VD+RII ATN++L + + EG+FREDL+YRLN I + Sbjct: 392 IQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLY 451 Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500 +PPLRER+EDI L+H+FL ++ + P I+P+V + L ++ WPGN+REL N ME Sbjct: 452 VPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERA 511 Query: 501 VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL 560 + + +I LP +++ N H++ D + ME+++I EAL Sbjct: 512 IILCGKD-LIRLNNLPISIVKNNKEFD------ESKHVTPIDIKEITIRNMEREIIIEAL 564 Query: 561 SRHN-SKKQVADELGIGIATLYRKIKKYEL 589 + + ++ + + LGI TLY K+K++ + Sbjct: 565 EKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 213/380 (56%), Gaps = 17/380 (4%) Query: 213 ESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQL 272 + G +I +LI+ +Q M D + Sbjct: 89 MAAMEKGAYSYIWKPFQNEQLILFV------KQALAMYRVVQENRLLKNELGDRYSFGNI 142 Query: 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332 +G+ M + I ++AP+ ++V++ GESGTGKE+VA++IH S R++ P++A+NCAA+ Sbjct: 143 IGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAAL 202 Query: 333 PEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR 392 E +LESELFG+ KGAFTGA+A K G + A+ GTLFLDEIG++ LQ KLLR ++ + Sbjct: 203 AESILESELFGHEKGAFTGAAA-MKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEK 261 Query: 393 EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIE 452 +G PI+VDIR+I+ATN++L + + FREDLFYRLNV+PI LPPLRERQ+DI Sbjct: 262 TFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIP 321 Query: 453 LLVHYFLHLHTR--RLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 LLV +FL + S + PDV + +++ WPGN+REL N++E + + S I Sbjct: 322 LLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDA-I 380 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQV 569 LP L S + + +D L +E+ MI+ A+ ++ + Sbjct: 381 SVNDLPRELTR------SVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQSHA 434 Query: 570 ADELGIGIATLYRKIKKYEL 589 A LGIG + L +KIKK+ L Sbjct: 435 AQILGIGKSGLNQKIKKFGL 454 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 152/461 (32%), Positives = 237/461 (51%), Gaps = 31/461 (6%) Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPI-------RFRPLT 211 + +I +++ ++VVD + V +++Q + N IG + R + Sbjct: 6 KEWIEQIITLLNERIVVVDAKGIVVYMDQAYCDFIERPVNQCIGYHVKDVIENTRMHVIV 65 Query: 212 FESNFTHGHMQHI-----------VSWDDKSELIIGQL--------HNIQGRQLFLMAFH 252 I + DD+ +G + + + + L+ Sbjct: 66 KTGKIELEDFHPINGSVMIANRFPIVVDDEIVGAVGTVMFPTPENLRDFKNKIQQLVTDL 125 Query: 253 QSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARA 312 + + + L+G + LK +A + SSV++ GESGTGKE+ A A Sbjct: 126 SYYRDKVNNELRSKYTFKDLIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGKELFANA 185 Query: 313 IHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLD 372 IH S R PF+ INC+AIPE+L ESELFGY +GAFT A GK GL + A+ GT+FLD Sbjct: 186 IHNSSLREQHPFLPINCSAIPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHNGTIFLD 245 Query: 373 EIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFY 432 EIG++PL +Q+KLLR ++ REI PIGA I +++RII ATN+NL + + G+FREDL+Y Sbjct: 246 EIGELPLSMQSKLLRVLQEREIQPIGAQKYISINVRIIVATNRNLLKMVENGEFREDLYY 305 Query: 433 RLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRE 492 RLNVI I +PPLR+R+EDI+ + L + I+ +V++ L H WPGN+RE Sbjct: 306 RLNVIHIDIPPLRKRKEDIKQTAYQLLRKLEHKFYRSDVMISKEVIKQLEMHHWPGNVRE 365 Query: 493 LSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLD---DAGGTALE 549 L N++E +N++ I LP + + E+ ++ + + + + Sbjct: 366 LENVLERAINMLKEN-TILLQHLPLYIRDIILEERMNIEQTEKNRGNEIVYLKKMKEVIA 424 Query: 550 EMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 + EKQ I+ ALS +K + A LGIG +LY K +Y + Sbjct: 425 DAEKQAIQNALSHTKGNKLEAAKLLGIGKTSLYDKCHQYSI 465 >UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424F3 Length = 475 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 137/461 (29%), Positives = 236/461 (51%), Gaps = 32/461 (6%) Query: 161 IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKP---------------- 204 ++ +++ D E V + L GV N I+G+ Sbjct: 11 ELQAILKGSKDNIVITDGEGNVLKASPNCLDIYGVEFNQILGRSVYDLEKEDIFSPSITV 70 Query: 205 --------IRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHT 256 + T + + + + +I +++ + +H Sbjct: 71 RVLNEKKECQVLQHTKGERTVLATGMPVFNENGELIRVISFSYDLTEIEELRENYHTLQE 130 Query: 257 SFSVANAPDEPHIE------QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVA 310 + + E +E ++ + + ++++ L+ R++ S ++V+ +GESG GK V A Sbjct: 131 RMGLYESQIEELLEKEEQDRDVILKSKAIKRVWELVKRVSDSEATVVFLGESGVGKNVFA 190 Query: 311 RAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLF 370 RA+H S R +KPFI +NC+AIPE L ESE+FGY G+FTGA GK G+I+ A+ GTLF Sbjct: 191 RALHNGSSRASKPFIEVNCSAIPEALFESEMFGYESGSFTGAHKKGKPGMIELADGGTLF 250 Query: 371 LDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDL 430 LDEIG++PL +QAKLL+ ++ + + +G P ++D R+I++TNQNL + G FR+DL Sbjct: 251 LDEIGELPLSMQAKLLKVLQEKTVTRVGGLKPHKIDFRLIASTNQNLEEMARSGSFRQDL 310 Query: 431 FYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNL 490 +YRL+VIPI +PPLR+R++DI LL+ ++LH ++ + ++ L + WPGN+ Sbjct: 311 YYRLHVIPIEIPPLRKRKDDILLLIQHYLHSFNQKYNVH-KHLQALALDELLAYHWPGNV 369 Query: 491 RELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE 550 REL N ME LV + + I+ + LP + + T A+ + Sbjct: 370 RELENTMERLV-LTSEKDRIEISDLPLLIHKQQHNSIEESTASQSNEAINASTYKEAMAQ 428 Query: 551 MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLN 591 +EK + A+ + + ++A+ LG+ +T+ RK+ KY L + Sbjct: 429 VEKHWLEHAIKQCKTTYEMAELLGLSQSTVVRKLHKYNLNS 469 >UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 Tax=Clostridiales RepID=C5EPL2_9FIRM Length = 640 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 157/503 (31%), Positives = 257/503 (51%), Gaps = 27/503 (5%) Query: 107 DRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMI 166 D +G A +Q+ + + + ++ IS+++ T+I Sbjct: 145 DALIG--GYSANILARQKDFPAVVIRTGEDTVLQAVDEAIHTVDQIRHQRIISQMYKTII 202 Query: 167 DNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR---------FRPLTFESNFT 217 + G+L VD +Q N+ + G + ++ +P++ F + Sbjct: 203 YSSKDGLLYVDAAGVIQVRNRVIRQMNGDIS--LMDRPLKQALPYLYKMFHSVITSGQEE 260 Query: 218 HGHMQHIV----------SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP 267 G + I + ++ I G + + + Q S + Sbjct: 261 SGRILTIPGTKVTVSVSCTPVIANKEISGVVFFLSDITMIQNLESQIRRKLSERGFQAKY 320 Query: 268 HIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAI 327 + ++ + RV+ Q R A S S+V++VGE+GTGKE+ A+ IH S R N PF+AI Sbjct: 321 TFQDIIHQSRVIDQTIETARRYAASDSNVIIVGETGTGKELFAQGIHNSSSRNNGPFVAI 380 Query: 328 NCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLR 387 NCAA+PE LLESELFGYV+GAFTG S GK GL + A+ GTLFLDE+G++ L +Q+KLLR Sbjct: 381 NCAALPENLLESELFGYVEGAFTGTSKGGKMGLFEQAHGGTLFLDEVGEISLPIQSKLLR 440 Query: 388 AIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRER 447 ++ R++ IG + I V++RIISATN+++++ +G+FR DL YRL+V+ + LPPLRER Sbjct: 441 VLQERQVRRIGDNKVIDVNVRIISATNKSISKLSDKGQFRRDLVYRLDVLRLFLPPLRER 500 Query: 448 QEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSG 507 + D+ELL + L + R + P + P + +L ++ + GN+REL N++E +V+ +G Sbjct: 501 ENDVELLFLHLLQVQGRETRTPLPQLEPGALSLLHQYPFIGNIRELKNMVERA-SVLKTG 559 Query: 508 EVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNS-K 566 +I L L D AL E E+ +R+AL + N + Sbjct: 560 NIITRKNLQDALYPPDLDMDPDSGGSLMLSAREGIKDAAALSEPER--LRQALEQCNGSR 617 Query: 567 KQVADELGIGIATLYRKIKKYEL 589 + A LG+ +TL+RK++KY + Sbjct: 618 TRAARLLGMDRSTLWRKMQKYGM 640 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 150/391 (38%), Positives = 212/391 (54%), Gaps = 14/391 (3%) Query: 200 IIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFS 259 +I T G +++ D EL N+ ++ + + Sbjct: 79 VILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL------NLIVQRALQLQSMKKEIRHL 132 Query: 260 VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR 319 ++ M + + ++IA S +SV++ GESGTGKE++ARAIH S R Sbjct: 133 HQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR 192 Query: 320 RNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPL 379 PFI +NCAA+PE LLESELFG+ KGAFTGA + GL + AN GTL LDEIG+MPL Sbjct: 193 AKGPFIKVNCAALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPL 251 Query: 380 MLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPI 439 +LQAKLLR ++ RE IG I+VDIRII+ATN++L + EG FREDLFYRLNVI + Sbjct: 252 VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHL 311 Query: 440 TLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEY 499 LPPLR+R+EDI LL ++FL + I P + +L WPGN+RELSN++E Sbjct: 312 ILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIER 371 Query: 500 LVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREA 559 V + SG +I S LPP + T + ++ +EK++I E Sbjct: 372 AVVM-NSGPIIFSEDLPPQIRQPVCNAGEVKTAP-----VGERNLKEEIKRVEKRIIMEV 425 Query: 560 LSRH-NSKKQVADELGIGIATLYRKIKKYEL 589 L + ++ + A LGI L K+++Y + Sbjct: 426 LEQQEGNRTRTALMLGISRRALMYKLQEYGI 456 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 216/362 (59%), Gaps = 10/362 (2%) Query: 237 QLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHI--EQLVGECRVMRQLKRLISRIAPSPS 294 L ++ + + + + PH ++G R M L +I ++A S + Sbjct: 105 NLDELESVVMRALEYQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESSA 164 Query: 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASA 354 +V++ GESGTGKE+ ARAIH+LS R +K F+ +NCAAIP+ LLESELFG+VKG+FTGA A Sbjct: 165 TVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNCAAIPDDLLESELFGHVKGSFTGAYA 224 Query: 355 NGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATN 414 N + G + A+ GTLFLDEIGDM LQ KLLR ++A+E P+G++ +VD+RII+A+N Sbjct: 225 N-RIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASN 283 Query: 415 QNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIA 474 +NL + +A FREDL+YRL+VIPIT+PPLR+R+EDI LL+++F R + G Sbjct: 284 KNLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVKGFT 343 Query: 475 PDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVT--- 531 + +E+L + WPGN+REL NL+E ++ + SG I LP L T ++ Sbjct: 344 REALEMLCNYDWPGNVRELENLVERMITMKESG-FITVDDLPEKYLAPRTVVAPPLSVSG 402 Query: 532 --EVSEAHLSLDDAGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYE 588 V + +A++ E +I +AL R +KK+ A L + TL K+KK Sbjct: 403 SVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRTTLIEKLKKKN 462 Query: 589 LL 590 L Sbjct: 463 LQ 464 >UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAE8_9DELT Length = 477 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 222/476 (46%), Gaps = 50/476 (10%) Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFR--------- 208 +++ ++D+++ GV + + + VN + G+ + +IGK + Sbjct: 1 MARHLDAILDSIEDGVFIANRDGYALKVNAAYEQLTGMSKAELIGKNVEELKKAGLFNLA 60 Query: 209 ----------------PLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFH 252 +T ++ + + D L++ +I Sbjct: 61 PITPEIVATGRPASSIQVTRDNRSMTIDGKPVRDPDGTVSLVVLYARDITLMARMRERIS 120 Query: 253 QSHTSFSVAN------APDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGK 306 + + I + E M++L L+ R+A + + +V+GE+G GK Sbjct: 121 RQQELIETYQHQMDFFIREGGGITNFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGK 180 Query: 307 EVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANT 366 E+ AR IH+ S RR KPF+ ++CA+IPE L+ESELFGY GAFTGA G+ G + A Sbjct: 181 ELFARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEG 240 Query: 367 GTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKF 426 GT+FLDEIG+MPL+LQ+KLLR ++ RE+ P+G+S + D+R+I+ATN+NL G F Sbjct: 241 GTIFLDEIGEMPLLLQSKLLRVLQDRELTPVGSSRARKTDVRVIAATNRNLEAEARVGTF 300 Query: 427 REDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRW 486 R DLF+RL V + +PPLR+R +DI L FL R + +V +L + W Sbjct: 301 RSDLFFRLRVAVLEIPPLRDRPDDILPLARLFLQRFGARYRKRA-AFSLEVERVLAHYNW 359 Query: 487 PGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTT----------------EQSDV 530 PGN+REL NL+E LV I + LP + S Sbjct: 360 PGNVRELENLIEGLVITC--DGEIAADDLPTAMRVKECPLPAAAMGGPGGAMATGGPSPA 417 Query: 531 TEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKK 586 +A D L E + A++ + + A LG+ T++RK+KK Sbjct: 418 ASCPDATPDWDRPYKDVLAAFEHDYLERAIAHFGTVGEAARRLGLDRTTIFRKMKK 473 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 143/459 (31%), Positives = 229/459 (49%), Gaps = 34/459 (7%) Query: 150 EDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--- 206 E+ + S + D++ +GV +D R+ NQ A + G + +GK R Sbjct: 114 EEDNSLASSSSSLGAVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEALGKQCRDIF 173 Query: 207 ----------FRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR----QLFLMAFH 252 R + I+ ++ + ++ + F Sbjct: 174 RSDLCERGCPMRQAIESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQLVGAVETFR 233 Query: 253 QSHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 + + + D+ + +VG+ VMR+L +++ +A S +SV++ GESGTGKE+ AR Sbjct: 234 CLTDEYHLPSLADKTGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGESGTGKEIFAR 293 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH LS PF+A+NC+AI E L+E+E FG+ KG+FTGA + G + A GT+FL Sbjct: 294 AIHSLSPSSKGPFVAVNCSAIAESLIEAEFFGHEKGSFTGAD-QSRAGRFEVAKGGTIFL 352 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DE+ ++ Q KLLR +E + +G + I ++ R+ISATN ++ + E FREDL+ Sbjct: 353 DEVAELRPEHQVKLLRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLEERTFREDLY 412 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL +P+ LPPLRER EDI LLV +F+ + ++ + P V+ ++ WPGN+R Sbjct: 413 YRLRTVPMHLPPLRERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFMEYHWPGNVR 472 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL +MEY V G VI LP T E+ S +D+ E Sbjct: 473 ELERVMEYAYVFV-KGPVIMMKHLP-------TIEEFAAKRKSGIPQDIDE------EAS 518 Query: 552 EKQMIREALSRHNSKKQ-VADELGIGIATLYRKIKKYEL 589 E++ I AL + K+Q A+ LG+ +L+R++K + Sbjct: 519 ERRAILRALEKAGGKRQEAANLLGMSRTSLWRRMKSLGM 557 >UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHA0_MOOTA Length = 752 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 145/320 (45%), Positives = 201/320 (62%), Gaps = 8/320 (2%) Query: 271 QLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCA 330 ++ M ++ L R+A S+V+++GESG GKEVVAR IH LS R PF+ INC Sbjct: 439 NIIVASPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARLIHALSERGKGPFVKINCG 498 Query: 331 AIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390 AIPE LLESELFGY +GAFTGA+ GK G ++ GT+FLDEI ++PL LQ KLL+ ++ Sbjct: 499 AIPENLLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQ 558 Query: 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED 450 + ++ +G I+++IRIISATN+NL Q + EG FREDL+YRLNVIP+T+PPLRER ED Sbjct: 559 EQRLVRVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPED 618 Query: 451 IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI 510 IE L+ +F+ RR I+ L + WPGN+REL N++E L +V G I Sbjct: 619 IEALIDHFMDRLNRRY-KQEKRISRRARRYLLAYPWPGNVRELHNVIEQLFVLV-EGTEI 676 Query: 511 DSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVA 570 LP + + S + A+EE+EKQ++ +AL ++ S QVA Sbjct: 677 LPEHLPYYIRD------DPARYSSHMLVKDIIPMKEAIEEVEKQLLLKALEKYRSTYQVA 730 Query: 571 DELGIGIATLYRKIKKYELL 590 ++LG+ +T+ RKIKKY L Sbjct: 731 EKLGVNQSTVVRKIKKYGLE 750 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 154/520 (29%), Positives = 245/520 (47%), Gaps = 37/520 (7%) Query: 99 LGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFS-DYVRHISTIFVSKLLEDQGPGDN 157 + + + DR LI + +I ++ E + + + + ++ + Sbjct: 63 VSSFIRSCDRVASADLLIDKLQDIPTYIVNDEGELIGEITGKEWLHYHTTITKELKQKEE 122 Query: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGK-------PIRFRPL 210 + ++ + D +G+ VVDD+ ++ N+ + + V IGK R + Sbjct: 123 MLHLYEMVFDTAYEGLTVVDDKGIIRLFNEAYSRYVKVPTEEAIGKDAALIIENTRLPVV 182 Query: 211 TFESNFTHGHMQHIVSWDDKSELI-------------------IGQLHNIQGRQLFLMAF 251 + + I + +++ + + L Sbjct: 183 LKTGVPERSQAHRLQGQNLVVHRIPIWKDNKVVAAAGILVYEGVSEIYQVIDQMEELDKT 242 Query: 252 HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVAR 311 S + E L+G+ + K++ + + S + V++ GESG GK++VA+ Sbjct: 243 KHSKFTKDPNKKNSLTRFEDLLGDSPCFTKTKKIARKASQSKAPVLITGESGVGKDIVAQ 302 Query: 312 AIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFL 371 AIH S FI++NCAAIPE LLESELFGY GAFTGA GK G I+ A+ GTLFL Sbjct: 303 AIHNESPITRGRFISVNCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIELAHKGTLFL 362 Query: 372 DEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431 DEIGDMPL +QAK+LR I+ + + +G++ +D R+I+ATN+++ Q + EG FREDL+ Sbjct: 363 DEIGDMPLTMQAKILRVIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHEGTFREDLY 422 Query: 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLR 491 YRL VIPI +P LRER EDI ++V + + G I VV+ + W GN+R Sbjct: 423 YRLYVIPIHIPSLRERAEDIPIIVSHKIAELNNEYG-DRKTIDQLVVQWMYTQPWKGNIR 481 Query: 492 ELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEM 551 EL N +E L + S + LP ++ + + + SL EE Sbjct: 482 ELINFLERLYVLSESQHM-TLDNLPDDIDDKQRLSSYNFLANKKVAESLS-------EEE 533 Query: 552 EKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYELL 590 E+ I+E L +K + A LGI ATLY K+ +Y L Sbjct: 534 ERDRIKETLEHVKGNKTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_B8J2Z7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J2Z7_DESDA Length = 605 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 145/481 (30%), Positives = 232/481 (48%), Gaps = 31/481 (6%) Query: 138 RHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQ 197 R + + ++Q + + ++D+M G+ ++D VN+ + + Sbjct: 119 RRFVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSNGTTLHVNKAMKRIANIEP 178 Query: 198 NNIIGKPIRFRPLTFE------------------------SNFTHGHMQHIVSWDDKSEL 233 +IGK + L + I Sbjct: 179 EEMIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPNGIRCLNTSTPIFDKQGNIWR 238 Query: 234 IIGQLHNIQGRQLFLMAFHQSHTSFSVANAPD----EPHIEQLVGECRVMRQLKRLISRI 289 ++ + ++ + + + + A + ++LV +VMR+ + + Sbjct: 239 VVACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHSNEKKLVATGKVMRRCVSELEKA 298 Query: 290 APSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAF 349 A +PS ++++GE+GTGK A IH+ S R + PFI++NCAAIP L+ESELFGY KGAF Sbjct: 299 ARAPSGILILGETGTGKTYAASYIHQKSPRADGPFISVNCAAIPPTLIESELFGYEKGAF 358 Query: 350 TGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRI 409 TGAS +GK G A+ GTL LDEIG++PL +QAK+L ++ + IG ++VD+RI Sbjct: 359 TGASRSGKKGYFGLADKGTLLLDEIGELPLSMQAKILHVLDGQGFRKIGGEKELRVDVRI 418 Query: 410 ISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSV 469 I+ATN+ L Q + G FR DL+YRL V+ I +PPLRE EDI L+ FL R Sbjct: 419 IAATNRPLDQLVNSGLFRADLYYRLRVLSINMPPLREHPEDIPALMMVFLDKACTRYN-T 477 Query: 470 YPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTE-QS 528 +P V++ KH WPGN+REL +++L + VI LP LL + + Sbjct: 478 IKTFSPSVIDCFSKHSWPGNVRELRAAVDFLAAM-TESSVISMRDLPAYLLGDLPGICED 536 Query: 529 DVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYE 588 + E + + A+E +E+ +I EAL+ S + A LGI +T+ RK K+ Sbjct: 537 EEDESLPGQADSNLSFREAVENLERSLISEALAATGSTYKAAARLGISQSTVVRKAKQLR 596 Query: 589 L 589 + Sbjct: 597 I 597 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 257/505 (50%), Gaps = 25/505 (4%) Query: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREF-----SDYVRHISTIFVSKLLEDQGPGDNI 158 L + + + SL ++ + + + +I + + +E N Sbjct: 24 KLYENNISIHSLEVFPNKVYIKVENLQESAKKVSIIKKLLNIDGVIKVQEVELLSYEKNE 83 Query: 159 SKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR--------FRPL 210 K+ +ID + G+L ++ +++ N K + I+GK IR L Sbjct: 84 RKLL-AIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEYIVGKNIRQLLGFDAPIINL 142 Query: 211 TFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGR------QLFLMAFHQSHTSFSVANAP 264 + I + L +++ +V + Sbjct: 143 LKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTLAAVASLKDINEAIEMTNVITSK 202 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 ++ + ++G M + +++ +A S++++ GESGTGKE+ A+AIHKLS R +K F Sbjct: 203 EDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGESGTGKELYAKAIHKLSSRSSKNF 262 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +AINCAA+P+ L+ESELFGY KG+FTGA GK GL +AA+ GTLFLDEIG++ L LQAK Sbjct: 263 LAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLFKAAHNGTLFLDEIGELSLSLQAK 322 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ I IG++ ++D+RII+ATN+NL I++ FREDL+YRLNVIPI +P L Sbjct: 323 LLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMISKNTFREDLYYRLNVIPIYIPCL 382 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 ++R EDI +LV++F+ +++G G +E L WPGN+REL N++E +N+ Sbjct: 383 KDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKLVNSNWPGNVRELKNVVERAMNLC 442 Query: 505 PSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN 564 G ++ L + N E + + + + +E EK+ + A+ ++ Sbjct: 443 -HGSLLKEENLIMDFEKNSNYETAS----DDYEFNFNFKLKDVVEAAEKKALISAIKKYK 497 Query: 565 SKKQVADELGIGIATLYRKIKKYEL 589 S ++ A LG+ T+ K+ KY++ Sbjct: 498 SCRKAAKALGVSHTTIINKLNKYKI 522 >UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRH6_SYNAS Length = 592 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 150/478 (31%), Positives = 234/478 (48%), Gaps = 35/478 (7%) Query: 144 FVSKLLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIG- 202 K+ + ++K +I + G+L+ D E V +N L+ + + + +G Sbjct: 116 VSDKIRAELKSCKKLNKELEGIIASSHDGILITDGEGNVLKINDALLRITELTREHFLGH 175 Query: 203 ------------------------KPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQL 238 K + + ++ Sbjct: 176 KMESLHENGHFHAESIESRARKEQKTVTGIQKIRTGKEVMVTSTPMFDDQGNILRMVTNA 235 Query: 239 HNIQGRQLFLMAFHQSHTSFSVAN------APDEPHIEQLVGECRVMRQLKRLISRIAPS 292 ++ QS S D+ +++ E M ++ + RIA S Sbjct: 236 RDMSEIINLQEQLAQSREVSSRLQTEFNRMLEDDLRANEMITESPTMYRIIEMSRRIAGS 295 Query: 293 PSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGA 352 +V++ GESG GKEV+A+ IH S RR FI +NC AIP+ LLESELFGY +GAFTGA Sbjct: 296 EVTVLIQGESGVGKEVLAKLIHVWSKRR-GAFIKVNCGAIPQHLLESELFGYNRGAFTGA 354 Query: 353 SANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412 + GK G+ + A GTLFLDEI D+PL LQ K L+ ++ R + +G + I++D+R I+A Sbjct: 355 NREGKPGIFELAAEGTLFLDEIEDLPLDLQVKFLQVVQDRAFIRLGGTRVIKLDVRFIAA 414 Query: 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPG 472 +N+ L + +AE KFREDLFYRLNV+PIT+PPLR+R+ED+ LLV++FL+ + + G Sbjct: 415 SNRELNKLVAERKFREDLFYRLNVVPITIPPLRQRKEDVPLLVNHFLNRYNAKYGVE-KT 473 Query: 473 IAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTE 532 +AP ++ + WPGN+REL N++E LV G +ID + L + Sbjct: 474 MAPALLSNFMNYPWPGNIRELKNMIERLVITCS-GNIIDVEAMGTKLNISSRNLTDQTVA 532 Query: 533 VSEAHLSLD-DAGGTALEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589 H +EE EK ++ AL ++ + +Q+ LGI + +K+KKY L Sbjct: 533 PEAGHKEEPLSTLKEVVEEAEKNILSGALKKYRNSRQIGRVLGISHTAVLKKLKKYHL 590 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%) Query: 157 NISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE-SN 215 +I ++++++ G+L VD + + N A K L + +IG P+ P E + Sbjct: 16 KSEEIADLVLNSINYGILAVDRKGMISACNAVARKFLDID-GQLIGNPVASVPQASELLD 74 Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEP------HI 269 F H + QH + +H+I G + + T A + + Sbjct: 75 FIHSNPQHHHERRITFQGRTLCVHSISGSDDETVILLRDATVSDKIRAELKSCKKLNKEL 134 Query: 270 EQLVGEC 276 E ++ Sbjct: 135 EGIIASS 141 >UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RXK4_9CLOT Length = 648 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 152/524 (29%), Positives = 254/524 (48%), Gaps = 43/524 (8%) Query: 104 ILQDRCVGVI--SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKI 161 L++ V VI LI + ++ + E +D + KL+ ++ Sbjct: 131 KLKNEGVDVIVGGLIQTRYARELGLPAVRIELTDKSLSYACQEAEKLIATVKAATRKAEE 190 Query: 162 FATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFE-------- 213 T+++ ++ + VD + + ++N+ A L + PI FE Sbjct: 191 LKTILNTTNEKYVAVDIKGNITWMNRVAKPYLPNPGGLVYDTPITEVLPAFEAVHDVLAT 250 Query: 214 ---------SNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAP 264 S + ++ K+ I+G + H+ + Sbjct: 251 GEEIIQETGSINGADILYDMIPLTYKNGEILGAVITFNDAGTITRGEHKIRDK-GIKGFQ 309 Query: 265 DEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPF 324 + + G + M Q + R A + +V+++GE+G+GKE+ A+++H S RRN PF Sbjct: 310 ATYSFKDICGSSQQMNQCIQHAKRYAHTDLTVLLLGETGSGKEMFAQSMHNASSRRNGPF 369 Query: 325 IAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAK 384 +A+NCAA+PE +LESELFGY GAFTGA +GK GL + A+ GT+FLDEIG+MP+ LQ++ Sbjct: 370 VAVNCAALPEGILESELFGYDDGAFTGARRSGKMGLFELAHNGTIFLDEIGEMPMSLQSR 429 Query: 385 LLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPL 444 LLR ++ R+++ +G V+IRI +ATN+NL + + E KFREDLFYRLNV+ + +PPL Sbjct: 430 LLRVLQERKVMRLGGDRVFPVNIRIFAATNKNLMELVGEHKFREDLFYRLNVLTLKIPPL 489 Query: 445 RERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVV 504 RER EDI L + FL + + P ++L + WPGN R+L + ME + + Sbjct: 490 RERVEDIPDLANLFLRESGGK-----CCLTPAAEKVLTSYGWPGNARQLRHFMEKVRIIC 544 Query: 505 PS--------GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE-----M 551 S G VI + P + G + + + + + EE + Sbjct: 545 DSSVISGEAAGYVIQNYEPPCEMEQRGNSSGFPGSNGIGNYKATKGRVNRSQEEPGQENI 604 Query: 552 EKQMIREALSRH-----NSKKQVADELGIGIATLYRKIKKYELL 590 +++ E L++ +K + A LGI +T++R IKK+ + Sbjct: 605 SREITEECLAQAMEQAGGNKTKAARILGIHRSTIWRYIKKFGME 648 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 153/376 (40%), Positives = 216/376 (57%), Gaps = 10/376 (2%) Query: 216 FTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGE 275 +G +I D EL I +Q R + A + I+ LVG+ Sbjct: 93 MRNGAYDYIAKPFDIDELDITVSKALQFRDILKD------NQRMRAELAEHQQIDSLVGD 146 Query: 276 CRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQ 335 R++ + + + S +++++ GESGTGKE+VARAIHK R +KPF+A+NCAAIPE Sbjct: 147 SPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVAVNCAAIPEG 206 Query: 336 LLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREIL 395 LLESE+FG+ KGAFTGA A+ + G Q A+ GTLFLDE+GDMPL LQAK+LRA++ R I Sbjct: 207 LLESEMFGHRKGAFTGAVAD-RVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIE 265 Query: 396 PIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLV 455 P+G +VD+R+I+ATN+NL + +A +FREDL+YRLNV PI LP LRER EDI LL Sbjct: 266 PVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLA 325 Query: 456 HYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLL 515 +F H G G +P+ ++ + + WPGN+REL N +E V +G+VI+ L Sbjct: 326 RHFAHSLGATAGKRISGFSPEALQAMASYAWPGNIRELQNCVERATIV-ATGQVIEEKDL 384 Query: 516 PPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADEL-G 574 P L +S + AL E+EK I AL + N + A +L G Sbjct: 385 PGYLFGPQAQGTESSAAISVGPQ-VPSDLEAALAEVEKAYILAALQQSNGVQAAAAQLIG 443 Query: 575 IGIATLYRKIKKYELL 590 I + + ++KK + Sbjct: 444 ISERSFWYRLKKLGIQ 459 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 144/486 (29%), Positives = 233/486 (47%), Gaps = 64/486 (13%) Query: 148 LLEDQGPGDNISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNII------ 201 + + + + + ++ I+ ++ VD R VN A + G + I Sbjct: 1 MADTEQHLEEMLRLANFTIERTGTPIVWVDSTTRFARVNDAACRCFGYSPDEFIRLTAQD 60 Query: 202 ---GKPIRFRPL---TFESNFTHGHMQHIVSWDDKSELIIGQ------------------ 237 G P P + H + + + Sbjct: 61 IAPGIPTELWPQHWAELKRMQFRTFSDHFRKRSGEKFPVEVEENFIRFEGREYSCSFIKD 120 Query: 238 ----------LHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLIS 287 L L ++ + + + +++V + + +L+ Sbjct: 121 MTQHFQTQEALRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPIFMKALQLVE 180 Query: 288 RIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKG 347 ++AP+ +SV+++GE+G GKE++ARAIH LS RR++P I +NCAA+P L+E+ELFG+ +G Sbjct: 181 QVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLMENELFGHERG 240 Query: 348 AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDI 407 AFTGA+ K G A+ GTLFLDE+GD+P+ LQ+KLLR ++ E +G + I+VD+ Sbjct: 241 AFTGANCR-KPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDV 299 Query: 408 RIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG 467 RI++AT+ +L +AEG+FR DL+YRLNV PI PPLRER+EDI LLV +F+ + G Sbjct: 300 RILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNG 359 Query: 468 SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQ 527 I V+E L + WPGN+REL N++E V + G ++ LP + Sbjct: 360 KSIELIPRHVMESLEGYPWPGNIRELQNVIERAVII-SRGNKLEIDSLPKMV-------- 410 Query: 528 SDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH----NSKKQVADELGIGIATLYRK 583 ++ D A + LE E++ I AL K A+ LG+ TL + Sbjct: 411 ----------IAADAAPISPLEVTEREHIIRALETTAWRVGGPKGAAEILGLKRTTLQAR 460 Query: 584 IKKYEL 589 ++K + Sbjct: 461 MRKLGI 466 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 149/477 (31%), Positives = 234/477 (49%), Gaps = 16/477 (3%) Query: 116 IAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGVLV 175 Q+ I+++ + + ++ DN K +++ + +++ Sbjct: 9 TVTMKNQKILIAEDDDLNRSNLTELLNAEGYEI----KAVDNGRKAMDAFVEDKYE-LVI 63 Query: 176 VDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELII 235 D ++ N L+ L ++ I + + + + ++D S+ + Sbjct: 64 TD----LKMPNGDGLELLKF-VKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMR 118 Query: 236 GQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSS 295 L + + A Q + ++ +++G M+ + I ++A S S+ Sbjct: 119 NDLVTLTVNRALSYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDST 178 Query: 296 VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASAN 355 V++ GESGTGKE+VARAIH S R N P I +NC AIPE LLESELFG+ KGAFTGA N Sbjct: 179 VIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRN 238 Query: 356 GKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQ 415 + G + A G++FLDEIGDM LQ K+LR I+ ++ IG I D+RII+AT+Q Sbjct: 239 -RLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQ 297 Query: 416 NLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAP 475 NL + E +FREDLFYR+NVIPI LP LRER DI +L ++FL + P Sbjct: 298 NLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTP 357 Query: 476 DVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSE 535 + + + + WPGN+REL NL+E LV + GE I LP + QS Sbjct: 358 EAIACMLHYPWPGNVRELENLIEMLVVMKEDGE-IKLEDLPSKIRQFKKETQSFKEYQIP 416 Query: 536 AHLSLDDAGGTALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYELLN 591 + + EK ++ +AL++ N K + A L + TL K+K+ + + Sbjct: 417 EE---GIDFNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNISS 470 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 144/402 (35%), Positives = 221/402 (54%), Gaps = 14/402 (3%) Query: 189 ALKTLGVVQNNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFL 248 A + L + + PI + V D+ ++ + + + + + Sbjct: 108 ARRFLNRSELAFLCVPI-IYDNRVVGVLSADKAARQVEDLDRELAMLSSISELIAKSVHI 166 Query: 249 MAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEV 308 A + + +++G RVM+++ LI+++A S ++V++ GE+GTGKE+ Sbjct: 167 RALEEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKEL 226 Query: 309 VARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT 368 VARAIH S R P I +NCAA+P+ L+ESELFG+ KGAFTGA + + G + A+ GT Sbjct: 227 VARAIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGAL-HARRGRFEEAHGGT 285 Query: 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428 +FLDE+G++ QAKLLR I+ ++ P+GAS + VD+RII+ATN+NL + +A G FR Sbjct: 286 IFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRA 345 Query: 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPG 488 DL+YRLNV PI LPPLRER DI LL YF+ + + +G I+ V+E H WPG Sbjct: 346 DLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLSHSWPG 405 Query: 489 NLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTAL 548 N+REL N +E V ++ +G+ I++ LPP+L E + Sbjct: 406 NVRELENCIERAV-LLATGDSIETLHLPPSLQIRSR----------EGEKKESGKFNAMI 454 Query: 549 EEMEKQMIREALSR-HNSKKQVADELGIGIATLYRKIKKYEL 589 E E+ MI +AL H ++ Q A LG + KI+K+ + Sbjct: 455 ESQERAMIVDALKESHGNQSQAARILGTTKRIIQYKIQKFGI 496 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 17/145 (11%) Query: 57 SGNSRLLRHVLETKTEKVVTQSRFDPLCE---GCDSKENCREKAFLGTPVILQDRCVGVI 113 G + V +T V + G N E AFL P+I +R VGV+ Sbjct: 76 PGEG-ITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVPIIYDNRVVGVL 134 Query: 114 SLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMDQGV 173 S ++ ++L + IS + + + ++ M+ Sbjct: 135 SA-----DKAARQVEDLDRELAMLSSISELIAKSVH--IRALEEENRRLRHMLGRST--- 184 Query: 174 LVVDDENRVQFVNQTALKTLGVVQN 198 V D E + ++ + G++ Sbjct: 185 -VPDSE--IIGHSRVMQEVFGLIAQ 206 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 217/393 (55%), Gaps = 20/393 (5%) Query: 198 NNIIGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTS 257 IG L+ E T+ + + I+ Q ++ + ++ Sbjct: 159 EEAIG------TLSIERANTNFGWESDLRILGMIASIVAQAARVRRDAAEQIQSLRAENE 212 Query: 258 FSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLS 317 E ++G MR + I ++A S ++V++ GESGTGKE+VA+A+H+ S Sbjct: 213 RLQEEIAHGFRPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKS 272 Query: 318 GRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDM 377 RRNKPF+ NCAA+P+ ++ESELFG+ KGAFTGA A + G ++AN GT+FLDEIGD+ Sbjct: 273 SRRNKPFVKFNCAALPDSIIESELFGHEKGAFTGALA-MRKGRFESANGGTIFLDEIGDI 331 Query: 378 PLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVI 437 L Q KLLR ++ RE +G+ +VD+R+I+AT++NL + + G FREDL+YRLNV Sbjct: 332 SLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVF 391 Query: 438 PITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLM 497 PI +PPLRER+ DI +L +F+ +R+G I+ +++L + W GN+REL N + Sbjct: 392 PIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWAGNVRELENCI 451 Query: 498 EYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIR 557 E V ++ G+ I + LPP L E S+V A++ +E++MI Sbjct: 452 ERAV-LLAKGQSIKAHHLPPTLQKKSRAESSEVA-----------TLEDAIQALEREMIV 499 Query: 558 EALSRHNSK-KQVADELGIGIATLYRKIKKYEL 589 +AL S + + LG+ ++KKY + Sbjct: 500 DALKETGSNLAEASRRLGLTERKAGLRVKKYGI 532 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.170 0.602 Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,408,241,122 Number of Sequences: 3077464 Number of extensions: 277989971 Number of successful extensions: 786469 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 13262 Number of HSP's successfully gapped in prelim test: 3220 Number of HSP's that attempted gapping in prelim test: 740715 Number of HSP's gapped (non-prelim): 29170 length of query: 592 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 458 effective length of database: 628,016,180 effective search space: 287631410440 effective search space used: 287631410440 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 97 (41.6 bits)