3 c1s2mA_ Probab=100.00  E-value=0  Score=351.62  Aligned_columns=370  Identities=29%

Q ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf             50487798889999999787998798999999999769989999279984789999999999983522123356783799
Q batch____         9 QKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRAL   88 (421)
Q Consensus         9 ~~f~~l~l~~~i~~~l~~~g~~~~~~~Q~~ai~~il~g~~viv~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~~l   88 (421)
                      .||++|+|++.|+++|+++||++|+|+|++||+++++|+|+++.||||||||++|++|+++.+....       .+++++
T Consensus         1 ~sf~~l~l~~~i~~~l~~~g~~~~~~~Q~~ai~~il~~~~vii~apTGsGKT~~~~l~~l~~l~~~~-------~~~~~i   73 (377)
T c1s2mA_           1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-------NKIQAL   73 (377)
T ss_dssp             CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-------CSCCEE
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------CCCEEE
T ss_conf             9933679988999999977799879899999999975998999927998678999999999985046-------882899


Q ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             98655999999999999974033960899850441156665420464047724056898764123451001132320123
Q batch____        89 IMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  168 (421)
Q Consensus        89 il~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~de~~  168 (421)
                      +++|+++|+.|+++.++.++......+..+....................+..+.............+......+.++.+
T Consensus        74 ii~p~~~l~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  153 (377)
T c1s2mA_          74 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD  153 (377)
T ss_dssp             EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEECCCE
T ss_conf             98473898799999999973103771599981787378777520357502320388876432000001100022202202


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             32235621577888763121268606876225544478898731666516731566675665158764168678999998
Q batch____       169 RMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQ  248 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (421)
                      ....   .........................................................+.........+.....
T Consensus       154 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (377)
T c1s2mA_         154 KMLS---RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLN  230 (377)
T ss_dssp             HHSS---HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHH
T ss_pred             EECC---CCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf             4413---3221023456641145750563112122002466652156651476401356555259999706035567887


Q ss_pred             HHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf             74001246627886110024578899850101331001355310233444566654102101346788605677984489
Q batch____       249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHV  328 (421)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~vlv~T~~~~~GiD~p~v~~V  328 (421)
                      ...........++++.....+.................++.+...++......|..+...+++||+++++|+|+|+|++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~T~~~~~GiDip~v~~V  310 (377)
T c1s2mA_         231 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV  310 (377)
T ss_dssp             HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred             HHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCHHCCCCCCCCCEE
T ss_conf             42001345226886230112467787542101332222456420121000000112211343102301123564676389


Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             980888889898765200013898239999868889999999999838868522169789
Q batch____       329 FNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDA  388 (421)
Q Consensus       329 I~~~~p~s~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  388 (421)
                      |+||+|.|..+|+||+|||||+|++|.||+|+++.|...+..++++++.+++..+.+.++
T Consensus       311 I~~~~p~s~~~~~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~~~~~i~~  370 (377)
T c1s2mA_         311 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK  370 (377)
T ss_dssp             EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCHHHCCHHHHH
T ss_conf             980888799899886210236888259999878889999999999938714455978774