BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (229 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 468 e-131 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 409 e-113 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 296 4e-79 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 290 4e-77 UniRef50_P45189 Phosphate regulon transcriptional regulatory pro... 256 5e-67 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 256 5e-67 UniRef50_A9KGK4 Phosphate regulon transcriptional regulatory pro... 251 1e-65 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 248 1e-64 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 236 6e-61 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 234 2e-60 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 230 2e-59 UniRef50_UPI000169905A phosphate regulon transcriptional regulat... 225 7e-58 UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxal... 216 4e-55 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 215 7e-55 UniRef50_B6BUZ2 Two component transcriptional regulator, winged ... 212 8e-54 UniRef50_B1Y714 Two component transcriptional regulator, winged ... 209 6e-53 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 194 2e-48 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 194 2e-48 UniRef50_A4G2G5 Phosphate regulon transcriptional regulatory pro... 192 5e-48 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 189 8e-47 UniRef50_A5EY83 Two component phosphate response regulator PhoB ... 189 8e-47 UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory pro... 188 1e-46 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 187 2e-46 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 186 6e-46 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 184 2e-45 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 183 4e-45 UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostri... 183 5e-45 UniRef50_A3ERN0 Putative two component transcriptional regulator... 182 7e-45 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 182 8e-45 UniRef50_B8G179 Two component transcriptional regulator, winged ... 182 1e-44 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 182 1e-44 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 181 1e-44 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 181 1e-44 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 181 2e-44 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 179 5e-44 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 179 1e-43 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 177 2e-43 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 177 3e-43 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 176 4e-43 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 176 5e-43 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 176 5e-43 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 175 9e-43 UniRef50_D1B7S7 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_D2R5T3 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 174 3e-42 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 174 3e-42 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_C4L340 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_Q04AR8 DNA-binding response regulator, OmpR family (Rec... 173 4e-42 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_UPI0001B559F0 two-component system, response regulator ... 173 4e-42 UniRef50_Q4HSL5 Phosphate regulon response regulator PhoB n=3 Ta... 172 6e-42 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 172 6e-42 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 172 6e-42 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 172 7e-42 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 172 8e-42 UniRef50_B2UR51 Two component transcriptional regulator, winged ... 172 1e-41 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 172 1e-41 UniRef50_C1SGQ1 Response regulator with CheY-like receiver domai... 171 1e-41 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 171 3e-41 UniRef50_D1U371 Two component transcriptional regulator, winged ... 170 3e-41 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 170 3e-41 UniRef50_C3RMH7 Signal transduction regulator n=8 Tax=Bacteria R... 170 3e-41 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 170 3e-41 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 170 3e-41 UniRef50_Q1ASD3 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 170 4e-41 UniRef50_C9RRV7 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 169 5e-41 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 169 5e-41 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 169 5e-41 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 169 6e-41 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 169 6e-41 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 169 6e-41 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 169 9e-41 UniRef50_C6BIK6 Two component transcriptional regulator, winged ... 169 1e-40 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 168 1e-40 UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter rub... 168 1e-40 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 168 1e-40 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 168 1e-40 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 168 1e-40 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 167 2e-40 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 167 2e-40 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_A9FLR1 DNA-binding response regulator n=1 Tax=Sorangium... 167 3e-40 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 167 3e-40 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 167 3e-40 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 167 3e-40 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 167 3e-40 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 167 4e-40 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 166 4e-40 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 166 5e-40 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 166 6e-40 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 166 6e-40 UniRef50_A6TM13 Two component transcriptional regulator, winged ... 166 8e-40 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 166 8e-40 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 166 8e-40 UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechoco... 166 8e-40 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_A6NQN5 Putative uncharacterized protein n=1 Tax=Bactero... 165 1e-39 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 164 2e-39 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillu... 164 3e-39 UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=... 164 3e-39 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 164 3e-39 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_Q0F0D6 Response regulator in two-component regulatory s... 163 3e-39 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 163 3e-39 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 163 4e-39 UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicu... 163 4e-39 UniRef50_C7N7D7 Response regulator with CheY-like receiver domai... 163 4e-39 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 163 5e-39 UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5... 163 5e-39 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 163 5e-39 UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacilla... 163 5e-39 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 162 6e-39 UniRef50_UPI000196BAD1 hypothetical protein CATMIT_00504 n=1 Tax... 162 6e-39 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 162 7e-39 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 162 9e-39 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 162 1e-38 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 162 1e-38 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 162 1e-38 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 162 1e-38 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 162 1e-38 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 162 1e-38 UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=I... 161 1e-38 UniRef50_B8I272 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_A4AL32 Putative two-component system response regulator... 161 1e-38 UniRef50_D1C280 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aq... 161 2e-38 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_C6LCG6 Phosphate regulon transcriptional regulatory pro... 161 2e-38 UniRef50_C7QI13 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_Q6MP48 DNA-binding response regulator PhoB n=1 Tax=Bdel... 161 2e-38 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 160 3e-38 UniRef50_C6RFL7 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 160 3e-38 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 160 4e-38 UniRef50_A6DFF3 DNA-binding response regulator n=2 Tax=Lentispha... 160 4e-38 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 160 4e-38 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 160 4e-38 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 159 5e-38 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 159 6e-38 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 159 6e-38 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 159 6e-38 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 159 6e-38 UniRef50_C4RGF6 Two-component system response regulator receiver... 159 6e-38 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 159 6e-38 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_C6I3R1 Two-component system response regulator n=20 Tax... 159 8e-38 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 159 9e-38 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 159 9e-38 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 159 1e-37 UniRef50_UPI0001745063 two component transcriptional regulator, ... 158 1e-37 UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicu... 158 1e-37 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_C4KYM3 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocys... 158 2e-37 UniRef50_C3RN03 Response regulator arlR n=3 Tax=Bacteria RepID=C... 158 2e-37 UniRef50_A6L7N3 Two-component system response regulator n=9 Tax=... 158 2e-37 UniRef50_B8G869 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 157 2e-37 UniRef50_B1HXG4 DNA-binding response regulator n=2 Tax=Bacillace... 157 2e-37 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 157 3e-37 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 157 4e-37 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 156 4e-37 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 156 4e-37 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 156 4e-37 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 156 5e-37 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 156 5e-37 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 155 7e-37 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_B3QUP3 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 155 8e-37 UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macroco... 155 8e-37 UniRef50_C4ZI38 DNA-binding response regulator, OmpR family (Rec... 155 8e-37 UniRef50_Q3A190 Two component signal transduction response regul... 155 9e-37 UniRef50_A6M0T3 Two component transcriptional regulator, winged ... 155 9e-37 UniRef50_C6D3C2 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 155 1e-36 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 155 1e-36 UniRef50_C4L703 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B9JNY4 Phosphate regulon transcriptional regulatory pro... 155 1e-36 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 155 1e-36 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 155 1e-36 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 155 1e-36 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 154 1e-36 UniRef50_C0YPJ5 DNA-binding response regulator n=1 Tax=Chryseoba... 154 2e-36 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 154 2e-36 UniRef50_A1VI78 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 154 2e-36 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q2SNE0 Response regulator consisting of a CheY-like rec... 154 2e-36 UniRef50_B1YEH2 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 154 3e-36 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 154 3e-36 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 154 3e-36 UniRef50_Q1IY67 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 153 3e-36 UniRef50_A9G6M8 Two-component response regulator n=1 Tax=Sorangi... 153 4e-36 UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc... 153 4e-36 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 153 4e-36 UniRef50_A5V0J0 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_C9M641 Phosphate regulon transcriptional regulatory pro... 153 5e-36 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_Q026B5 Two component heavy metal response transcription... 153 5e-36 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 153 5e-36 UniRef50_A4XGM2 Two component transcriptional regulator, winged ... 153 6e-36 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/229 (99%), Positives = 228/229 (99%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVM GEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF Sbjct: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/229 (88%), Positives = 204/229 (89%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 NHVWGTNVYVEDRTVDV K P G + G F F Sbjct: 181 NHVWGTNVYVEDRTVDVTFVACVKHWSPAGMTAWCRPCAVQGIVFQPAF 229 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 296 bits (758), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 139/226 (61%), Positives = 178/226 (78%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE PIR+M+ LE + +EA D A + + + PDLILLDWMLPG SGI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + LKR+ +T +IP++MLTA+GEE+++V+GLE GADDYITKPFSP+ELVAR+KAV+RR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 M + E I+++GL LDP SHRV + P++MGPTE++LL FF+TH ERVY+R QLL+H Sbjct: 124 TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDH 183 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG NVYVE+RTVDVHIRRLRKAL GHDR +QTVRG GYRFS + Sbjct: 184 VWGGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNK 229 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 290 bits (741), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/228 (61%), Positives = 178/228 (78%), Gaps = 1/228 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + + IL+V+DEAPIREM+ LE G++ +EAE+ A + + PDLILLDWMLPG S Sbjct: 2 VGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTS 61 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + LKR+ +T DIP++MLTA+GEE+++++GLE GADDYITKPFSP+ELVAR+KAV+ Sbjct: 62 GIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVL 121 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P E IE+ GL LDP SHRV +P EMGPTE++LL FFMTH ER Y+R QLL Sbjct: 122 RRTGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLL 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + VWG NVYVE+RTVDVHIRRLRKAL ++ +VQTVRGTGYRFST+ Sbjct: 182 DQVWGGNVYVEERTVDVHIRRLRKALGE-VYENLVQTVRGTGYRFSTK 228 >UniRef50_P45189 Phosphate regulon transcriptional regulatory protein phoB n=18 Tax=Pasteurellaceae RepID=PHOB_HAEIN Length = 231 Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 121/227 (53%), Positives = 162/227 (71%), Gaps = 2/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+IL+VEDE IREM+ L Q + +EA D+ +A+N++ E P LILLDWMLPG S Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFI+++K++ IP++MLTA+ EED + L GADDYITKPFSP+ L+ARI+AV Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI + I++ LS+D + RV ++ + + TEFKLLHFFM HPE+VYSREQLL Sbjct: 120 RRIYEQQ-SQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLL 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N +W ++ VE RTVD +IRRLR+ L P + +QTVRG+GYRFS+ Sbjct: 179 NRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSS 225 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 256 bits (653), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/233 (52%), Positives = 170/233 (72%), Gaps = 5/233 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++ IL+VEDE I E++ L+ G P+ A + A+ + + PD++L+DWMLPG S Sbjct: 3 LSSNILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMS 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + L+ ++ T+ IP++MLTAR EE D+V+GL+ GADDYITKPFSPKEL+ARI+AV+ Sbjct: 63 GVALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVL 122 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVM---AGEEPLE--MGPTEFKLLHFFMTHPERVYS 175 RR +P E +++ GLS+DP+S R + G EPLE +GPTEFKLLH+ M HPERV+S Sbjct: 123 RRRAPQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHS 182 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 R LL+ VWG +V++E+RTVDVHI+RLR+AL P MV+TVRG GYRF+ + Sbjct: 183 RGALLDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRFTAQ 235 >UniRef50_A9KGK4 Phosphate regulon transcriptional regulatory protein n=6 Tax=Coxiella burnetii RepID=A9KGK4_COXBN Length = 248 Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 167/224 (74%), Gaps = 1/224 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L++EDE IR+MV F L + F+ ++AED A+ QL PDLILLDWMLPG SGI+ Sbjct: 20 KLLIIEDEIAIRDMVRFSLP-DEFELLDAEDTAKAIKQLAAQIPDLILLDWMLPGKSGIE 78 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 FI+ +K++ + +DIP+V+LTA+ EEE++VRGL +GADDYITKPFSP EL+ARI+A++RR Sbjct: 79 FIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDELIARIRAILRRG 138 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 ++ + I++ + ++ H V +E + + PTE+K+LHFFM HP + YSR+QL+ ++ Sbjct: 139 PLISSNQEIKIGDIKINTAKHLVTVKDEHIALSPTEYKMLHFFMKHPNKTYSRDQLITYI 198 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 WG N+Y++DRTVDV +RRLR L+ H +++T+RG GY+ ST Sbjct: 199 WGGNIYIDDRTVDVQVRRLRDKLKKYDHHHLIKTIRGAGYQLST 242 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/231 (51%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RIL+VEDE I E++ L G++ +A D A + + P++I+LDWMLPG S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+QF K L+ T+ +P++MLTA+ EE D+V GL++GADDY+TKPFSPKELVAR++A++ Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAG-----EEPLEMGPTEFKLLHFFMTHPERVYS 175 RR P+ + + L LDP+SHRV+A + + +GPTEF+LL FFM +PERV+S Sbjct: 121 RRQMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHS 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 R LL+ VWG+ VY+E+RTVDVHI+RLR AL P DR ++TVRG+GYR + Sbjct: 181 RASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRIT 231 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 155/226 (68%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +LVVEDE + ++ + LE+ G+ A D + A+ Q E PDL+++DWMLP S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L+ T ++P++MLTARGEE DRVRGL+TGADDY+ KPFS EL ARI+AV+ Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI P E+VIE +++D +HRV + + +GPTEF+LL + M HP RV+SREQLL Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + VWG++VYVE RTVDVH+ RLRKAL ++TVR GY F Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFD 226 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/227 (49%), Positives = 160/227 (70%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++ R+LVVEDE I+E++ L++NGF +SA L P L++LDWMLPG + Sbjct: 6 VSSRVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKN 65 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + + L+R TR +P+++LTARGEE DRV GLE+GADDY+ KPFSP+ELVAR+ A++ Sbjct: 66 GLAWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALL 125 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + GL +D +HRV A E + +GPTEF+LL F+T+PERV+SR+ LL Sbjct: 126 RRSYGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLL 185 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + +WG +VE+RTVDVHIRRLR+ LE G+ ++++TVRG GYR S Sbjct: 186 DQIWGRQSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYRCSA 232 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 111/223 (49%), Positives = 157/223 (70%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE I+E++ L++ GF + A L +P P LI+LDWMLPG SG+ Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + + L+R T+ +P+++LTARGEE DRV GLE+GADDY++KPFSP+EL AR++A++RR Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + + L +D +HRV +E + MGPTEF++L F T+P+RVYSRE LL+H+ Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG ++E+RTVDVHIRRLR+AL G+ +++TVRG GYR + Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYRCN 234 >UniRef50_UPI000169905A phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169905A Length = 182 Score = 225 bits (574), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 99/166 (59%), Positives = 137/166 (82%) Query: 26 GFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTAR 85 G++ +EAED A L PDLIL+DWMLPG SG++ + LKR+S+T +IPV++LTAR Sbjct: 2 GYETMEAEDAGQARTCLARQIPDLILMDWMLPGTSGVELTQELKRDSLTAEIPVIVLTAR 61 Query: 86 GEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHR 145 GEE+D+VRGLE+GA+DY+TKPFSP+EL+ARIK ++RR++P A EE +E+ GL LDPTS+R Sbjct: 62 GEEDDKVRGLESGAEDYVTKPFSPRELIARIKVILRRVAPHATEEAVEVAGLRLDPTSYR 121 Query: 146 VMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVE 191 V A + +E+GPTEF+LLHFFMTH +V+SR +LL++VWGTNV+++ Sbjct: 122 VSADSKEIELGPTEFRLLHFFMTHQNKVFSRSRLLDNVWGTNVFID 167 >UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxalobacter formigenes RepID=C3X860_OXAFO Length = 233 Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 151/224 (67%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE I E++ F ++ G++PV + A L PD++LLDWMLP SG++ Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ + +PV+MLTA+ EED+V GL+ GADDYITKPFSPKELVARI A++RR Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 P + ++ ++LDP S +V +EMG +EFKLL F M +P+RV+SR QLL+ VW Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + +E+RTVDVH+ RLRKAL+ G + +V+TVRG GY S + Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK--GQENLVRTVRGMGYMLSEK 229 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 215 bits (548), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 108/227 (47%), Positives = 150/227 (66%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +I VVEDE + ++ + LE GF+ D A +L E PDL++LDWMLPG S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L++ T +P++MLTARGEE +RVRGL TGADDY+ KPFS EL+AR+KA++ Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + ++ + LD +HRV + +GPTEF+LL F M+ P RV+SR QLL Sbjct: 121 RRAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VWG ++YV++RTVDVH+ RLRKAL +++TVRG GY + Sbjct: 181 DGVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_B6BUZ2 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BUZ2_9PROT Length = 233 Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 145/223 (65%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+VEDE I EM+ L N FQP+ A + + A + L + DLILLDWMLPG GI Sbjct: 5 NILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGID 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F+K ++ S T +IPV+MLTA+ EE +++ G + GADDY+ KPFS KEL+ARIKA++RR Sbjct: 65 FLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRK 124 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P + I+ L + P SH V + +++GPTEFKLL+ + RV SRE +++ + Sbjct: 125 KPDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKI 184 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 W ++ RT+DVH++RLR L+ G + ++T+RG GY+ S Sbjct: 185 WNNESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKLS 227 >UniRef50_B1Y714 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=B1Y714_LEPCP Length = 265 Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV+ED+A RE++ L G+ A D A + E PDL+LLD M+ GG + + Sbjct: 5 ILVIEDDAAARELLAGNLRHAGYTVSCASDLGEARARTKETRPDLVLLDRMVAGGHALSY 64 Query: 65 IKHLKRESMTRDIPVVMLTARG-EEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + T I ++++ A + D V LE+GADD + K S E++ARI+AVMRR Sbjct: 65 ARQLRGDQRTSGIAIIVIGADAPQAHDTVAALESGADDCVCKSVSVSEVLARIRAVMRRS 124 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P ++ +E+ GL DP + RV A +E+ E++LLHFFMTHP+R+ R QLL+ V Sbjct: 125 APQCGDQALEISGLRFDPAARRVTALGRDIELCAIEYRLLHFFMTHPDRILGRSQLLDQV 184 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG +V VE+R VD+H+RRLR+ALEP GH +++T+RG GYRF Sbjct: 185 WGDHVCVEERAVDIHVRRLRRALEPSGHAALIETIRGMGYRF 226 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 14/236 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP---------DLILL 52 A RILVVEDEA IR+MV VL+Q GF A D +A+N P DL++L Sbjct: 23 ASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVL 82 Query: 53 DWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112 D MLP +G+ F + L+R+ +T +P++ML+A+ E DRV GLE GADDY+TKPF +EL Sbjct: 83 DLMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 113 VARIKAVMRRIS--PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHP 170 VAR +A++RR P V+ +GL L P RV+ + L + P EF+LL FM HP Sbjct: 141 VARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 171 ERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 RV+SR+QLL +WG + + +T+DVHIR LR+ +E + + TVRG GYR Sbjct: 201 RRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 154/235 (65%), Gaps = 13/235 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEAPIRE++ F L+++G++ A D +A+ + P DL+LLD MLP G++ Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQR--APEADLVLLDIMLPEVDGLE 59 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + LK + T IP++MLTA+ EE DRV GLE GADDY+ KPFS +EL+AR+KAV+RR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 124 SPMAV--------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 + + EE + + GL LD +S++ ++ + + P E++LL +T+P R +S Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKAL--EPGGHDRMVQTVRGTGYRFSTR 228 R++LL +WG Y + RTVDVHIR LR L +P D ++TVRG GYRF+ R Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSD-AIETVRGVGYRFARR 233 >UniRef50_A4G2G5 Phosphate regulon transcriptional regulatory protein PhoB n=3 Tax=Oxalobacteraceae RepID=A4G2G5_HERAR Length = 229 Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 145/224 (64%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE I E++ F LE + V A +A + + P LILLDWMLP SG+Q Sbjct: 8 ILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSGLQL 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ R +P++MLTA+ EED+V GLE GADDY+TKPFSP+EL+AR+ +++ Sbjct: 68 LSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLKHKV 127 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 P +E ++ + LDP S V G + + +G EFKLL + + HP VYSR+QL++ VW Sbjct: 128 PEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRDQLIDRVW 187 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 G ++ +++RTVDV++ RLRK L G + +++TVRG GY + + Sbjct: 188 GRHIAIDERTVDVNVLRLRKVLGEGRY--LIKTVRGVGYMLTEK 229 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 102/226 (45%), Positives = 144/226 (63%), Gaps = 4/226 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSGIQ 63 IL+VEDEA + + + L++ G++ A D +A+ +L EP PD ILLD MLP SG + Sbjct: 13 ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 KHL+ + TRD+PV+M+TA+G E DRV G E GADDY+ KPFS +EL+ RI+A++RR Sbjct: 73 ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132 Query: 124 S-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 P ++I L +D HRV E+ + + EF+LL+ F++ RV +R+ LL+ Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG V RTVD H++RLR+ L G R V+T+RG GYRF R Sbjct: 193 VWGIEADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRFRDR 236 >UniRef50_A5EY83 Two component phosphate response regulator PhoB n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY83_DICNV Length = 229 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 148/230 (64%), Gaps = 4/230 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL+VEDE I++++ + L Q+ +Q +EA A L + PDL+LLDWMLP GS Sbjct: 1 MKKRILLVEDEPAIQQLLLYGL-QDQYQCIEAGTLAQAKTILQQQIPDLVLLDWMLPDGS 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ ++ L++ R +PV+MLTAR +E D ++GL+ GADDY+TKPFS EL +RIKA+ Sbjct: 60 GIKILEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKALF 119 Query: 121 RRISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+ P + EE + + ++++ ++ V ++ L++ EF+LL F+ HP +V SREQ Sbjct: 120 RRM-PESEEEQSCLSWEDITMNLLTYEVFFQDKLLKLNRREFQLLECFLRHPNKVLSREQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 LL+ W + DR VDV IRRLRKA E V ++RG GYR + Sbjct: 179 LLDFAWQGEEDIGDRAVDVAIRRLRKAFENIDEQLPVMSIRGIGYRLGQK 228 >UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXI2_METI4 Length = 258 Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 6/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++ILVVEDE + ++C L GF+ + A++ A+ + PDLI+LD M+P SG+ Sbjct: 32 KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGL 91 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K+LK++ T IP+V+LTA+ + DR+ GLE GADDYI KPFSP+EL+ RI++++RR Sbjct: 92 DVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRR 151 Query: 123 ---ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +P+A E++ + G+ LDP ++ +E+ P EF+LL + V SREQL Sbjct: 152 RLEDNPLA-EQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQL 210 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L VWG + V+ RT+D HIRRLR L G + ++TVRG GYRF Sbjct: 211 LKEVWGYDKTVDTRTIDTHIRRLRDKL--GRASQYLRTVRGIGYRF 254 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 148/227 (65%), Gaps = 5/227 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+A IRE+ LE GF +EA D +A+ QL + D+++LD MLP G Q Sbjct: 1 MLLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQV 60 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 + ++R +PV+MLTA G+EEDR+ GL+ GADDY+ KPFSP+ELV+R++AV+RR Sbjct: 61 LAEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAF 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 ++P +++ GL +D RV AG++ L + P EF LL+F +HP++V+SRE LL+ Sbjct: 119 LAPADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDR 178 Query: 183 VWGTNVYVEDRTVDVHIRRLR-KALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + + RTVDVH+ RLR K L ++TV G GYRF + Sbjct: 179 VWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVK 225 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+A IREM+ + L+ GF + + E PDLILLD MLPG G+ Sbjct: 2 IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+R+ T IPV+M TA+G E D+V+GL+ GADDY+ KPF E+++RIKAV+RR Sbjct: 62 LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + + I + L +DPT++ V G E + + EF+LL F +P RV++R++LL+ VW Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 G E RTVDVHI LR L G+ ++ TVRG GYR R Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEER 223 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 144/225 (64%), Gaps = 3/225 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +L++ED+ I E++ +E+ G+ A D ++ + E +PD I LD MLP G Sbjct: 5 ALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ ++ + IP++MLT +GE +D+++GL+ GADDY+ KPF P ELVAR+KAVMR Sbjct: 65 WELCQEIRWDN--KKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMR 122 Query: 122 RISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R + E +V+ + GL +D ++ AG++ + M P E LL++ ++P +V++R+QLL Sbjct: 123 RADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLL 182 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + +WG + RT+DVHI+R+R+ L ++T+RG GY+F Sbjct: 183 DQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 141/225 (62%), Gaps = 6/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+D+ + E+V E+ GF+ V +D D + + PD+++LD MLPG G+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R IP++MLTA+GEE DRV GLE GADDY+ KPFSP+ELVARIKAV+RR Sbjct: 66 LCRRLR---AVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122 Query: 124 SPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 A ++ GL + +V+ E+ P EF LL+ +P+RV++RE+LL Sbjct: 123 QAADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLG 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 VWG + + + RTVDVHIRRLR L H+ + QTV G GY+F+ Sbjct: 183 AVWGYDYFGDQRTVDVHIRRLRTKLASLPHEYL-QTVWGVGYKFT 226 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 139/224 (62%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 + VVED+ + E++ F LE GF+ + + + + P++I+LD MLPG G++ Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L++ + +DIP++ LTA+ EEED++ G GADDYITKPFS KEL+ARI+AV+ R Sbjct: 66 AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRYK 125 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++++ L LD V +P+ + TEF++L + + + +++ +R++++N +W Sbjct: 126 KTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINMLW 185 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + DRTVDVHI+ LR L G + ++T+RG GY+FS + Sbjct: 186 SYGTDINDRTVDVHIKHLRDKL--GDFGKYIRTIRGVGYKFSLK 227 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 148/225 (65%), Gaps = 4/225 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVVEDEA IR + LE G++ EAE + A+ L E PDL++LD MLPG G++ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +H+ RE+M D +++LTA+G++ D++ GLE GADDY+ KPF+P EL+ARIKA++RR Sbjct: 67 VCQHI-RETMP-DPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR 124 Query: 124 SPMAVEEVIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 G L LD +++++ + +E+ PTE+ LL FM +P + RE++LN Sbjct: 125 DRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNG 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 +WG + + + +T+DVHIRRLR+ +E D R ++T+ G+GYR+ Sbjct: 185 IWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQ 229 >UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYV2_9CLOT Length = 232 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 148/229 (64%), Gaps = 3/229 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++ ++L+++DE I E++ F LE +G++ + + D + E PDLILLDWMLP S Sbjct: 4 VSEKVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNIS 63 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ +K +++++ + IPV+MLTA+ E+D+V GLE GADDYITKPFS KEL+ARI +VM Sbjct: 64 GIEVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVM 123 Query: 121 RRISPMAVEEVIEMQG--LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR +E E+ L L+ T H V ++ +++ EF+LL + + +V SR Sbjct: 124 RRYGMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNF 183 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 LL+ +WG Y E RTVDVHIR LRK LE G D + ++T+RG GY+ Sbjct: 184 LLDEIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKID 232 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 4/230 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+ILV+EDEA I ++ Q F+ + ++ PDLI+LD MLPG Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + LK++ +T IPVV+LTA+ +E DR+ GLE GADDYI KPF+PKEL+ARIKA++ Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR P E G+ LD H AG+ L++ EF LL + + RV R+ Sbjct: 121 RRTEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQM 180 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 LL+ VWG + DRTVDVHIRRLRK L G + VQTV+ GY+F R Sbjct: 181 LLDLVWGADYEGTDRTVDVHIRRLRKKL--GDYQDRVQTVKQIGYKFMDR 228 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 145/229 (63%), Gaps = 6/229 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++ILVV+D+ I E+V + L + G+ ++A D + A+ + D+ ++D MLPG G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ L+ R+ PVV L+A+GEE D+V GLE GADDYITKPFS +E++ARIKAV RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 123 ISPMAVE-----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 I A E + I +GL +D + V ++ + + P EF+LL F + +V+SR+ Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 LL+ +WG + Y + RTVDVHIRRLR +E + + + TVRG GY+F Sbjct: 208 VLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 143/228 (62%), Gaps = 4/228 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+A I+E+V + LE+ G+ + AE+ + A+ LN+ PDL+LLD MLP G+ Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 K ++ T +IP++ML+AR E DRV GLE GADDYITKPFSP+EL+ARIKA +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + L + P S+ V E + + EF+LLH FM P +V+SRE LL Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 VWG V + RTVDVHI LR L+ ++++VRG GYR + + Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLK--SVSPIIESVRGVGYRLAVNY 228 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 14/232 (6%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA IR ++ LE+ + EAE+ D A+ + E DLILLD M+PG GI+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ + T P++MLTA+GEE +RV+G E G DDYI KPFSP+E+V R+KA++RR Sbjct: 68 VCRQIREKKAT---PIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 124 SPMA-------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 S + + V+ LS+D +HRV A + + P E++LL+F P++VY R Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALE---PGGHDRMVQTVRGTGYRF 225 E+LL VW + + RTVD H++RLR+ L P ++V TV G GY+F Sbjct: 185 EKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIV-TVWGVGYKF 235 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 149/257 (57%), Gaps = 36/257 (14%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDEA I E++ L + GF+ D +A+++ PDLI+LD M+PG G++ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 +++++ +D ++MLTARGEE DR+ GL TGADDYI KPFSP+ELVAR++AV+RR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 123 -----------------------ISPMAVEEVIEMQGLSLDPTSHRVMAGEE-------- 151 S VE V +GL ++ ++ +G+ Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 152 --PLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 209 PLE+ P EF LL FM++P RV++R QL++ +WG + + ++R VD HI RLRK +EP Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 210 -GHDRMVQTVRGTGYRF 225 V+TV G GYRF Sbjct: 243 PSAPTFVKTVVGVGYRF 259 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 150/231 (64%), Gaps = 9/231 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGI 62 R+L+VED+ +R++V L + G + D ++A+ L++ P DL+LLD MLPG GI Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 63 QFIKHLKRESMT--RDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 + L RES + R +PVVMLTAR +E V GLE GADDYITKPFSP++L +R++A + Sbjct: 63 SVCREL-RESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQL 121 Query: 121 RR--ISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR ++ A E +E GL +D RV A E +E+ EF++L ++P RVYSR Sbjct: 122 RRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 EQ+++H+WG + E R+ DVHI+ LR+ +EP + R +QTVRG GYRF+ Sbjct: 182 EQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ IL+V+DE IR ++ LE+ F+ EA + A E ILLD MLP Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ L+ T P++MLTA+GEE +RV G E+GADDYI KPFSP+E+V R+KA++ Sbjct: 61 GIQVATKLREHKQT---PIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 RRISPMAVEE-------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR VE+ VIE + L +D +HRV+A + + + P E++LL + P +V Sbjct: 118 RRTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRFSTR 228 + REQLL VW Y + RTVD H++RLR+ L + M+QTV G GY+F + Sbjct: 178 FDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 139/228 (60%), Gaps = 7/228 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DE + E+V F LE+ G++ + A+D + A+ PDLI+LD ++PG G Sbjct: 4 ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 + L+R+ TR IP++ML+AR +E D+V GLE GADDYITKPFSP+ELVAR+ A +RR Sbjct: 64 CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123 Query: 123 ----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 I P + +I L +D + G + + EF+LL+F P + +SR Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 LL W +V + RTVDVHIRR+R+ LE + + ++T RG GYRF Sbjct: 184 LLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 146/236 (61%), Gaps = 14/236 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+V+D+A I E++ L + F D + A+ Q E P+LILLD MLPG G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + +++ T IP++ML+A+GE D+V GLE GADDY+ KPF KELVAR+KAV+RR Sbjct: 65 EVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121 Query: 123 ISP--MAVEEVIEMQ--------GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 + P E+VI + L ++ +++ V + +EM P E +L +F +HP + Sbjct: 122 VVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQ 181 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 V++REQLL+H+WG + RTVDVHI+RLR+ ++ R+ TV G GY+F + Sbjct: 182 VFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVK 236 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+V+DE I E+V F L++ G+ + A + A++ PDL++LD MLPG G + Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 + ++ ++T +IP+VMLTA+GEE D V GLE GA+DYI+KPFSP+ELVARI+ ++R Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124 Query: 122 -RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R+ A + + LS+D HRV+ + L++ +EF++L F +T V++R Q++ Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V G N V +R+VDV I LRK L P ++TVRG GYRF Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPCAD--FIETVRGVGYRF 227 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 144/231 (62%), Gaps = 6/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+IL+V+DE I MV L + G++ + A + A+N + PDLI+LDWM+P S Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ ++ ++++S IP++MLTA+ EE D++ G E G DDY+ KPFS +EL ARIK ++ Sbjct: 61 GIEVLREIRKKS---QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTIL 117 Query: 121 RRISPMAV-EEVIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +R+ + EE++ +G L+L P V +PL++ PTEFKLL F+ +P + YSR + Sbjct: 118 KRLEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFSTR 228 LL + G +RT+D HI LRK +E + +QTV G GY+ R Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 142/235 (60%), Gaps = 15/235 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQ-----LNEPWPD-----LILLDW 54 ILV+EDE IRE V L++ G+ + A D A+N L E P+ LI+LD Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 55 MLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVA 114 MLPG +G+ + ++R+ T +P++M++A+G E DRV GLE GADDY+ KPF +E++A Sbjct: 84 MLPGINGLDLCRLIRRQGCT--VPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 115 RIKAVMRR--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 R +A++RR I + V+ + L L P R E L + P E+KLL FM HP R Sbjct: 142 RCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRR 201 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 V+ REQLL+ VWG + + +TVDVHIR LR+ +E H + + TVRG GYRF Sbjct: 202 VWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRFG 256 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 141/227 (62%), Gaps = 7/227 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++L+VED+ I +++ L+ G+ P A + LN PDLILLD LP GS Sbjct: 1 MNTQVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G F K + + IP+++LTA+ + D+V GLE GADDYITKPF KE+ +RIKAV Sbjct: 61 GFDFCKDINAKYT---IPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVF 117 Query: 121 RRISPMAVEE---VIEMQ-GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RRI A ++ I++ + ++ + V+ +E +++ P E++LL FF+ + +V+SR Sbjct: 118 RRIEKSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSR 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 EQL++++W + + RTVD+HIRR+R L+ GH +++TV G GY Sbjct: 178 EQLIDNIWEFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGY 224 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 140/223 (62%), Gaps = 8/223 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE IR ++ L + G++ EAED + + E DL++LD MLP G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ +K+ + T PV+MLTAR + ED V G E GADDYITKPF+ K L+AR+K+++R+ Sbjct: 67 SILREIKKYTET---PVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + M VE +IE+ L ++ TSH V + +E+ P E+ LL + + + + SRE+LLN Sbjct: 124 TNNM-VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + +DRT+D HI+ LRK + ++T+RG GY+ Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKL 221 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 140/229 (61%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW---PDLILLDWMLP 57 M++ I V+ED+A I +V L+ G+ Y + N L++ P L +LD M+P Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYA---IRLYSTPANLLSDAERQPPALFMLDIMVP 57 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 GG G+ + L+ + IP++ +TAR E DRV GLE GADDYITKPF+P+EL+AR+K Sbjct: 58 GGDGLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVK 117 Query: 118 AVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 AV+RR + +I + + +D ++ ++ E TEF+LL + HP RV+SR+ Sbjct: 118 AVLRRFERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRD 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 LL+ VWG +V R+VDV++RR+R+ +E + R ++TVRG GYRF Sbjct: 178 HLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_D1B7S7 Two component transcriptional regulator, winged helix family n=2 Tax=Synergistaceae RepID=D1B7S7_THEAS Length = 228 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 139/223 (62%), Gaps = 3/223 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE IRE++ + G+ + A D D AV+ PDLI+LD MLP G + Sbjct: 4 RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMDGWE 63 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ E R +PV+MLTAR +E D V GLE GADDY+ KPFS EL+AR++A +RR Sbjct: 64 VCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRRS 123 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 SP E I M L+L+P ++ G PL++ PTE +LL M+ R+ S+E++L Sbjct: 124 DSPQGGEVQISMGNLTLEPQGDVLVDG-RPLDLSPTEHRLLEVLMSGRGRLVSKEEILGK 182 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +WG +V + RTVDV++ RLR+ LE G ++TVRG GYR Sbjct: 183 IWG-HVGSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYRV 224 >UniRef50_D2R5T3 Two component transcriptional regulator, winged helix family n=6 Tax=Planctomycetaceae RepID=D2R5T3_9PLAN Length = 236 Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 140/223 (62%), Gaps = 3/223 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LV+ED+ + E++ + L+Q G++ + A D + Q PD++LLD MLP G+ Sbjct: 5 KVLVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLMLPVIDGLD 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ +S RD+ ++MLTA+ EE D + G GADDY+ KPFS K L+ R+KA+ RR Sbjct: 65 VCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKALRRRR 124 Query: 124 SPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S A EEV G+++D H+ MA +PL++ +EF+LL + P RV+ R +L++ Sbjct: 125 SGEATPEEVTSRLGVTVDRRRHQAMADGKPLQLTRSEFRLLDTLIRQPGRVFHRAELIDA 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G + V +RT+DVHIR LR+ L G + +++TVRG GYR+ Sbjct: 185 ALGEDTMVMERTIDVHIRALRRKL--GQYADVIETVRGVGYRY 225 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILVV+D+ + EM+ VL +GF+PV D A+ PDL+LLD MLPG Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + ++ ES D+P+VMLTA+ + D VRGLE+GADDY+ KPF P ELVAR++A + Sbjct: 90 GIEVCRQIRGES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 146 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R A E + + +++D H V G E + + P EF LL P +V++RE LL Sbjct: 147 RPGDQKA-PETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLL 205 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRFST 227 VWG + R V+VH++RLR +E P + +V TVRG GY+ + Sbjct: 206 EQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPE-VVLTVRGVGYKAGS 253 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 145/229 (63%), Gaps = 9/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +++LVV+DE I E++ F LE+NG+Q ++ + +L + PDL++LD MLPG G Sbjct: 9 GQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGG 68 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K +K + +P++M+TA+ E + V GLE GADDY+ KPFS +EL+AR+++V+R Sbjct: 69 MDLCKKIKEKY---SMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 122 RISPMAVEEV----IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R EE I + + L+ +H+ +++ E+K+L+ FMT+P ++R+ Sbjct: 126 RTKEGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRD 185 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +LL+ VWG ++YV DR VDV+I+RLR L G ++T+RG GYRF+ Sbjct: 186 KLLDRVWGKDIYVTDRAVDVNIKRLRDKL--GDEKERLETIRGIGYRFN 232 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 2/228 (0%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++L+V+D+ + MV LE GF A D + + + + ++LD MLP G Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +P++MLTA+ EE+D++ GL+ GADDY+ KPFSP+ELVAR++A++RR Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 123 ISPMA-VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++++E L++D S++V + +++ P EF+LL+ + +PERV++RE++L Sbjct: 124 DQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 +WG + RTVD H++R+RK LEP G D ++QTV G GY+F + Sbjct: 184 KIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 142/225 (63%), Gaps = 9/225 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV +DE +R+++ LE+ G++ V A + A+ +L E L+LLD M+P G+ Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P+++LTAR EE DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + E+ ++ LS+D V + + + EF LL+ F+T+ E+V+SREQLL+ Sbjct: 124 HSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 +WGT + RTVD HI+ LR L E GG+ +QTV G GY+F Sbjct: 184 QIWGTEYHGNLRTVDTHIKTLRLKLGEAGGY---IQTVWGIGYKF 225 >UniRef50_Q04AR8 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=8 Tax=Bacteria RepID=Q04AR8_LACDB Length = 225 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+ IRE+ + LE F+ ED S L+ PDL++LD MLP G + Sbjct: 4 IWCVEDDESIREIEMYTLESMNFKVRGFEDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ S T D+PV++ +A+ E D+V+ L++GADDY+TKPF E+V+R+KAV+RR + Sbjct: 64 LHRLRSTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 E+ IE G+ + H V +++ E+ LL +THP V+SRE++++ +W Sbjct: 124 RKK-EDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW 182 Query: 185 GTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 T Y E RTVDVH+R LR+ L E G H ++TVRG GYR+ Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAGKH---IETVRGVGYRY 221 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 4/222 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DEA IR + LE G++ + A + + PDLI+LD MLPG G++ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 L+ +S D+ ++MLTAR +E DRV GL GADDY+TKPFSP+ELVAR++A++RR Sbjct: 65 TARLREKS---DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRR 121 Query: 125 PMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V+ V+ + +DP + A + LE+ PTEF LL + RV SRE L+ V Sbjct: 122 GKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKV 181 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + Y DR VDV++ ++R+ +E + +++T RG GYRF Sbjct: 182 WGADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 133/223 (59%), Gaps = 6/223 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVVED+A IR ++ L G+ A D +AV Q PDLI+LD MLP G + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 + L+ + + PV+ LTAR EDR+ GL +G DDY+TKPF +E++ R++A++RR Sbjct: 73 TRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 124 SPMAVEEV---IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +P + V + GLSLD ++H V PL + PTEF+LL F+ HPERV + ++L Sbjct: 131 APASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEIL 190 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VW + + R VD +++ LR+ L+ GG ++ TVRG GY Sbjct: 191 QRVWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGY 233 >UniRef50_Q4HSL5 Phosphate regulon response regulator PhoB n=3 Tax=Campylobacterales RepID=Q4HSL5_CAMUP Length = 224 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 + V+ED+A I E+V + L+ D +S L P +++LD MLP SG + Sbjct: 2 VFVLEDDANILELVLYALKSQNINAQGFLDIESFKKALKTEIPQVLVLDVMLPNASGFEI 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +K LK + T++I V+MLTA E D+V+GL+ GADDYITKPFS E +ARI+A++RRIS Sbjct: 62 LKELKANANTKNISVLMLTALNHEIDKVKGLDLGADDYITKPFSVMEFIARIRAILRRIS 121 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 E I + L L + V + + + EF+LL F + + RV+SR+ LL +W Sbjct: 122 QEQNTENIVLDELELSYKTREVKVCDAIIVLTLKEFELLGFLLKNQNRVFSRDDLLEILW 181 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 G + E RT+D+HI+ LR+ L G R ++T+RG GY+ S Sbjct: 182 GYSYSGESRTIDIHIKTLRQKL--GIASRFIKTIRGVGYKIS 221 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +I+V+EDE I ++ F L+ G+ A D + + PDL+LLD MLPG S Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K +K IP++MLTARG+E DR+ G E GADDY+ KPFSP+EL+ RIK V+ Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 121 RR-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR ++ + + GL+ D ++ ++ + PTEF L F+ + +V SREQL Sbjct: 121 RRNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 L++ WG RTVD H+RRLRK L P + ++TVRG GYR Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLGP--YADWLETVRGIGYR 223 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDE I E + LE GF+ + D A + + PDL+LLD MLPG G++ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 K L+ S IP++MLTAR EE DR+ GLE GADDYI KPFSP+E+VAR+KAV+RR Sbjct: 67 CKELRSFSQ---IPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSN 123 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P + I + LD S V G L++ P+EF +L M+ P RV+SR +LL+ Sbjct: 124 TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLA 183 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 G+ DRT+D HIR LRK ++ D + ++ G GY+F+ Sbjct: 184 IGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 142/225 (63%), Gaps = 8/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV +DE+ IR++V + LE++G++ A D SA+ ++ DL++LD ++P G+ Sbjct: 5 RILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDGLN 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ D+P++ L++R EE DR+ GLE G DDY+TKPFSP+EL R+KAV+RR+ Sbjct: 65 LCRKLRERG---DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRV 121 Query: 124 SPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + + + + L+LDP +H + ++ + + TEF++LH + P RV +R QL Sbjct: 122 AARRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQL 181 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 ++ + ++V +RT+D HIRR+R L P G + ++TV G GY+ Sbjct: 182 IDRAYEDGLHVSERTIDTHIRRIRAKLRPYGIE-AIETVHGLGYK 225 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 134/231 (58%), Gaps = 7/231 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA RILVV+DE IR+++CF LE+ G + A+ DLI+LD +P Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + +++ T +P++ L+AR EE D+V GLE G DDY+TKPFSP+ELVAR+KA++ Sbjct: 61 GLDVCRQIRK---TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAIL 117 Query: 121 RRISPMAVEE---VIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 +R A E I + G LSLD VM G+ + M EF +L ++ P+ V+SR Sbjct: 118 KRSGNEAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSR 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 E+L+ +G YV DRT+D HIR +R G ++ TV G G++ + Sbjct: 178 ERLMEAAYGAGTYVADRTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKLGS 228 >UniRef50_B2UR51 Two component transcriptional regulator, winged helix family n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UR51_AKKM8 Length = 234 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 2/222 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+ ED+ I ++V + LE+ G P+ A D +A+ P+LILLD M+PG G Sbjct: 4 ILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMDGHGV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+R+S T++IPV+ LTA+ + EDR++GLE GADDY+TKPFSPKELV R+ +V++R Sbjct: 64 LRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLKRCE 123 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + E + D + + +E +++ TEFKL+ + + +R LL+ VW Sbjct: 124 HTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDLLSCVW 183 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 G + + RT+D H++RLR+ L P + ++TVR GYRF+ Sbjct: 184 GYSHQAQSRTLDTHMKRLRQKLAP--YADCIETVRSIGYRFT 223 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 134/227 (59%), Gaps = 3/227 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL++ED+A + ++ + LE+ GF A+ + PDLILLD MLP G+ Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++++ IPV+ LTAR E DR+ GLE GA+DY+ KPF +EL+ARIK R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRN 126 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + A ++E G+ LD TS +V PL + TEF+LL F M P V+SREQLLN Sbjct: 127 QATPA--RLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNA 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFSTR 228 VWG + + DR VDV++ RLR+ +E ++ +VRG GY F R Sbjct: 185 VWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPR 231 >UniRef50_C1SGQ1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGQ1_9BACT Length = 223 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 136/221 (61%), Gaps = 3/221 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LV+ED IR+++ + L + F+ + ++ + + L D+ILLD MLPG G+Q Sbjct: 3 KVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKGMQ 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F++ ++ +P+++++A+ E+D + GLE GADDY+TKPFS K L+A+I A++RR Sbjct: 63 FLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILRR- 121 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P +VI + G+++D ++ V E + + E++LL + HP+RV++R Q+LN V Sbjct: 122 NPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNAV 181 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG V RTVD H+ LRK L G +++V GYR Sbjct: 182 WGYESDVYTRTVDTHVSSLRKKL--GTRGSFIKSVPKIGYR 220 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DE +R+M+ LEQ GF VEA D A+ PDL++LD M+P G +F Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ +ES T PV++LTA+ E+ D++ GLE GADDY+TKPF+ +EL+ARI+AV+RR Sbjct: 64 LRAFAKESRT---PVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 125 PMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +E +V+ + LD T V G +++ P+EF +L M P +V+SR LL+ V Sbjct: 121 QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRV 180 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 G +RT+DVHIR LR +E H + ++TV G GYRF+ Sbjct: 181 SGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 10/232 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I++VED I E V L++ F V A AV L + P LI+LD +L G+G Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 65 IKHLKRE------SMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 + ++ + D+P+++L+AR +EEDR+ G GADDY+TKPFSP EL RIK+ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++RR +++ IE+ L +DP V P+E+ P EF+LLH +HP RV+SRE+ Sbjct: 131 ILRRSIGLSIA-CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREE 189 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH---DRMVQTVRGTGYRFST 227 LL VWG + RTVDVH+ RLR LE G + M+ T G GY+ + Sbjct: 190 LLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLES 241 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 136/230 (59%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE + ++V E+ GF E + A+ +L DL++LD LPG G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ ++ E + PV+MLTAR +E DRV GLE GADDY+ KPFSP+ELVAR++A++RR Sbjct: 62 GVLRQMRAEGFEQ--PVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119 Query: 123 ISPMA------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + + + GL LD R + L + P EF LL + +HP +V++R Sbjct: 120 TAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 E LL VWG + YV+ RTVDVHIRRLR L E ++QT G GYRF Sbjct: 180 EVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 139/225 (61%), Gaps = 9/225 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA +R+++ L++ +Q A + A++ + L+LLD M+P G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P++MLTAR +E DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 V++ + + L LD S V +P+ + EF LLH F+ + ++V+SREQLL+ Sbjct: 124 HRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 +WG + RTVD HI+ LR L E GG +QTV G GY+F Sbjct: 184 QIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 3/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+L+VED+ IR+++ L ++ V+ E+ A + L + DL +LD MLPG +G Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +K ++ ++ +D+PV++L+A+ +E D++ GL+ GADDY+TKPFS EL ARI++++RR Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR- 121 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 E +I++ GL +D V EEP+E+ EF+LL + + R SRE+L+N + Sbjct: 122 -SKKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQI 180 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 WG + E RT+DVHI LRK L + +Q+VR GYR + Sbjct: 181 WGYDFIGESRTLDVHINSLRKKL-GNEYAHWIQSVRQVGYRLVS 223 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/215 (40%), Positives = 136/215 (63%), Gaps = 14/215 (6%) Query: 22 LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81 LE GF+ D AV + P L++LD M+PG +G+ ++ ++ S +PV+M Sbjct: 24 LEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS---KVPVIM 80 Query: 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI--------SPMAVEE--V 131 LTA+GE+ DR+ GLE GADDY+ KPF+P+EL+ARIKAV+RR +P A + + Sbjct: 81 LTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSAAQRAVL 140 Query: 132 IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVE 191 +E GL+L+ + H ++ E+ LE+ TEF+LL M +P+ +R++L++ WG + Sbjct: 141 VEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAWGRDFSAY 200 Query: 192 DRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 DR++DVH+ +LR L P GHD+ ++TV GTGY F Sbjct: 201 DRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMF 235 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+ IRE++ + L G+ + DY + L DLI+LD MLPG SG++ Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +K ++ T++IPV+MLTA+ E D++ GL++GADDY+ KPFS EL+AR++A++RR S Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + I + + LD V E +E+ EF+LL++ +++ +V +RE ++ +W Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 G + E RTVDVHI LR+ L+ +++T+R GY+ Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASS--IIKTIRNLGYK 235 >UniRef50_C3RMH7 Signal transduction regulator n=8 Tax=Bacteria RepID=C3RMH7_9MOLU Length = 229 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 142/225 (63%), Gaps = 6/225 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RI VVED+ IRE++ L NG++ V+ ++ A+ ++++ P L + D MLP S Sbjct: 3 MGERIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMS 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI IK + RE+ + ++P+++L+A+ E D+V GL++G+DDY+TKPF EL AR+++++ Sbjct: 63 GIDAIKEI-RETDS-ELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR ++I + L++D + V ++ LE+ E++LL + M + RV RE+LL Sbjct: 121 RR---HVTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 N +WG + E R +DVHIR LR L GH + ++T+R GYRF Sbjct: 178 NEIWGYDFIGESRALDVHIRALRSKLNDDGH-KYIKTIRSVGYRF 221 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + +L+VEDE IR +V ++ GF +EA D + A+ +E DL +LD M+P Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ ++++ S T P+++LTA+ +EED++ G E GADDY+TKPFSPK L+A+ KA++ Sbjct: 61 GLAVCRNIREVSNT---PIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + +++ GL+++ SH V E L + P E+ LL + ++ SR+++L Sbjct: 118 RRTGTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 ++VWG + + + RTVD +I+RLR+ L + + TVRG+GY+F + Sbjct: 178 DNVWGYDYFGDIRTVDTNIKRLREKLLDKAN--YIATVRGSGYKFEVK 223 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 5/222 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + EM+ VL + G++P D + AV + PD++LLD MLPG +G+Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ +S +P+VMLTA+G+ D V+GLE GADDY+TKPF P ELVAR++A +RR Sbjct: 77 ICQDIRTQST---VPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR- 132 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 E + + + +D +H+V P+ + P EF LL P +V++RE LL V Sbjct: 133 GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQV 192 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYR 224 WG + R V+VH++RLR +E +V TVRG GY+ Sbjct: 193 WGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q1ASD3 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASD3_RUBXD Length = 241 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VED+ I + + L + GF+ A + + PDLILLD MLPG SGI+ Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ E D+ ++M+TA+ EED+VRG E GADDY+TKPF KELVARI A ++R Sbjct: 68 CQRIREED--EDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 V+E LSLD + G EPL + EF+LL + P + SRE+L VW Sbjct: 126 AGHRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVW 185 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G RT+DVHIRR+R ALE + T RG GYRF Sbjct: 186 GHAGVGSSRTIDVHIRRIRAALEKKSAYDYIHTARGLGYRF 226 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 141/233 (60%), Gaps = 7/233 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M++ ILVV+DE I ++ + LEQ +Q V ++ AV + + D +++D MLP Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ K +++ IP++MLTA+ + D++ GLE GADDYITKPFSP+EL++RIK ++ Sbjct: 61 GIEATKQIRK--FDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVIL 118 Query: 121 RR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR I+ ++ ++ + +++D V E +++ P EFKLL + + +V SR Sbjct: 119 RRTDRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFSTR 228 +Q+L VWG + R VD+HI LR LE H ++++T+RG GY F ++ Sbjct: 179 DQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSK 231 >UniRef50_C9RRV7 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=C9RRV7_FIBSS Length = 225 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 6/224 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I +VED+A +REM + L+ F + E Q+ PDL +LD MLPG G+ Sbjct: 2 IYIVEDDAEVREMETYALKSGSFDVMAFECGKVMDEQVKVKVPDLFILDIMLPGEDGLSI 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 +K L+ + T++IPV+MLTA+G E D+V+GL+ GADDYI KPF EL++R++AV+RR Sbjct: 62 LKRLRGQENTKNIPVIMLTAKGTELDKVKGLDLGADDYIAKPFGILELISRVRAVLRRSG 121 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 S + + G+ LD V +E+ E++LL M+ P V+SR+Q+L Sbjct: 122 RGSSESTESLSLALGGVILDDQRRSVTVDGVAVELTFKEYELLKLLMSRPGTVFSRQQIL 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 +WG + ++ RTVD+H++ LR+ L G H +VQTVR GY+ Sbjct: 182 EKIWGVDFDMDTRTVDMHVKTLRQKL--GAHGSIVQTVRNVGYK 223 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+D+ I +++ LE+ G+ + A D AV++ + PD++LLD MLP G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++R T D+P++MLTAR +E DR+ GLE GADDY+ KPFSPKE++AR++A+ RR+ Sbjct: 62 VCKEIRR---TSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRL 118 Query: 124 SPMA----VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 P + E ++++ LD S + P+E+ PTE+KLL F+ HP +V+SR QL Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 + V +RTVD HI+ LRK L + ++T+ G GY+ Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 141/228 (61%), Gaps = 6/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL V+D+ I +++ L + GF+ + A + A+ + + PDL++LD M+PG Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + LK + R++P+++L+AR EE DRV G G DDY TKPFSP EL R+KAV+ Sbjct: 61 GFETYQKLKAQ---REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVL 117 Query: 121 RRIS--PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+ + +E +++ L+LD T V +E+ P +F+LL ++P RV+++ Sbjct: 118 RRLGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 LL+ +W ++ Y +D TV VHIRRLR+ +E + ++TV G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 133/219 (60%), Gaps = 3/219 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE + + + L+ G+ D S + E PDLILLDWMLPG SG+ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L++ +P+++LTA+ + DRV GL+ GADDYI KPF+ +EL+AR++A +RR + Sbjct: 66 CKRLRQTGSK--VPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-N 122 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++++ LSL+ + V G +E+ EF LL + M+HP++V SR+Q+L VW Sbjct: 123 HEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVW 182 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 G + + ++V++R LR LE R++QTVRG GY Sbjct: 183 GYDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGY 221 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 139/229 (60%), Gaps = 9/229 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+DE +RE + L GF+ EA+ A + L PD+ L+D M+PG G+ Sbjct: 13 ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLSL 72 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 +HL TRD+PV++LTARGE DR+ GLE GADDY+TKPF P+ELVARI++V+RR Sbjct: 73 TRHLIE---TRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAG 129 Query: 124 -SPM--AVEEVIEMQGLSLDPTSHRVMAGEEPL-EMGPTEFKLLHFFMTHPERVYSREQL 179 +P A + +G LDP R+ + L + EF++L F+ HP++V R++L Sbjct: 130 RAPAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDRL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFST 227 L+ V G ++ DR VD + RLR+ +E + +QTVRG GYRF+ Sbjct: 190 LDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAA 238 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 133/219 (60%), Gaps = 3/219 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV+EDEA + V L G++ A D + + + PDL+LLDWMLPG SG++ Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ S +PVV++TAR E DR GL+ GADDY+ KPFS +EL++RI+ +R+ Sbjct: 71 CRRLR--STGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPR 128 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 +++ M L LDP + V GE +E+ E+ LL + M HP +V +R+Q+L HVW Sbjct: 129 RSRDGQLVFMD-LILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVW 187 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 G + + ++V+IR LR +E G R++QTVRG GY Sbjct: 188 GCDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGY 226 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 135/225 (60%), Gaps = 6/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL++ED+ IR + L +G + +EA + + D++L+D MLP G + Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+R S D+P++M+TAR + D V GLE GADDY+TKPF KEL ARI+A++RR Sbjct: 80 CCRRLRRSS---DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 124 SPMA--VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 EVI++Q L + P + V E L + TEF+LL + P+RVYSREQLL Sbjct: 137 RSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLE 196 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 VWG + + + R VDVH+RRLR +E H R++ TVRG GY+ Sbjct: 197 RVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+VEDE IR+M+ L Q GF+ A D A+ + PDLI+LD MLPG S Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +K +++++ T P+++LTAR +E D++ GLE GADDYITKPFSP+EL RIKAV+ Sbjct: 61 GWEVMKKIRQKNNT---PIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + + LS++P + G+ L + PTEFK+L +P +V+SR +L Sbjct: 118 RRSRPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRF 225 V+G +RT+D HI LR +E G + ++TV G GY+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 139/230 (60%), Gaps = 10/230 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LV +D+ +RE++ E+ + + A D A+ + + PD+++LD M+P G + Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++++ D P++MLTA+ EE DRV GLE GADDY+TKPFSP+E+VARI+A+MRR+ Sbjct: 94 ACREIRKKW---DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRL 150 Query: 124 SPM------AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 P A + L++D V+ E + P EF LL + P V+SRE Sbjct: 151 QPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSRE 210 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 QLL VWG + + + RT+DVHI+++R+ L+ +D +QTV G GY+F Sbjct: 211 QLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD-CIQTVWGIGYKFGV 259 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 134/228 (58%), Gaps = 11/228 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL++ED + M + GF+ D + E DLI+LD MLP G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ T +P++MLTA+ E D+V G E GADDY+TKPFSP LVARIKAV+RR Sbjct: 62 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRY 118 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLE-MGPTEFKLLHFFMTHPERVYSREQ 178 E++IE + +++ + V+ EP+E + P EF LL++ + +P +V+SREQ Sbjct: 119 KATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYRF 225 LL VWG Y ++RTVDVHI+RLRK L D+ + TV G GY+F Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKF 224 >UniRef50_C6BIK6 Two component transcriptional regulator, winged helix family n=9 Tax=cellular organisms RepID=C6BIK6_RALP1 Length = 280 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 5/230 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+VE + E + F L G A + P+L+L++W P Sbjct: 1 MGIQILLVEHDQAEGERLSFSLRDGGHDVQRVSHPGQAQAAILAAMPELLLMEWTWPERE 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 I + L+ TR +PV++L+ G+ +V L+ GADDY+ KP EL ARI+AV+ Sbjct: 61 SIDMLLALRANMQTRGLPVIVLSRHGDARAKVAALDAGADDYVVKPCDTGELHARIRAVL 120 Query: 121 RRISP-MAVEEVIEMQGLSLDPTSHRVMA----GEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR +P ++++++ GL LDP + V A G + + P EF+LLHF + HP+RV+S Sbjct: 121 RRRAPHQHGDDILQVNGLRLDPLTLGVTAQTETGPRAIALSPLEFRLLHFLVAHPQRVHS 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 R QLL+ VWG +V+V +RTVDVH+R+LR AL D ++QTVRG GYR Sbjct: 181 RTQLLDRVWGNHVFVGERTVDVHVRKLRVALAGTPCDGLIQTVRGGGYRL 230 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 147/230 (63%), Gaps = 9/230 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA+ ILV++DEA +RE++ L+ GF EA++ + + PDLILLD M+P Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ F++ +E+ T P+++LTA+ E+ D++ GLE GADDYITKPF+ +E++AR++AV+ Sbjct: 61 GLDFMRAWNKEAET---PIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117 Query: 121 RR---ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR P A +V+ + + L+ ++ +M GE+ +++ P+EF++L M P V+SR Sbjct: 118 RRSYKAQPQA--DVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRL 175 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 LL+ G +RT+DVHIR LR +EP + R ++TV G GYRF+ Sbjct: 176 DLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 139/227 (61%), Gaps = 4/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV++DE I E++ LE G+ ++A A+ + +E PDL++LD MLP S Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +++ES ++P++MLTA+ E+ + G G+DDYITKPFSPK+LVA++ AV+ Sbjct: 61 GENVCERIRKES---EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R+ E +I L +D + +V + + + +E+K+L +P +++SRE+L+ Sbjct: 118 KRVKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELM 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 +++ N+ + DR +D HI+ +R L+ + ++T+RG GYRF+ Sbjct: 178 DYISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFN 224 >UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S085_SALRD Length = 236 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 143/229 (62%), Gaps = 13/229 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DE + +V + LEQ GF + A D A+ Q E PDLI+LD M+P GI+ Sbjct: 13 ILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIEV 72 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L++++ R IP++MLTAR EE+D+V+GL+ GAD Y+ KP S +V++ KA++R S Sbjct: 73 CQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLR--S 130 Query: 125 PMAVE---EVIEMQGLSLDPTSHRVMA----GEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 E + IE+ L +D + V GE + EF+LL+F +HP RV+SR+ Sbjct: 131 AHRYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQ 190 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++L+ VWG +VYV DRTVDVHIR++R+ + ++TV+G GYR Sbjct: 191 EILDEVWGRDVYVVDRTVDVHIRKIREKIGS----EYIETVKGVGYRMK 235 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 140/228 (61%), Gaps = 7/228 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VED+ I +++ LE+ F + D ++ + E PDLI+LD MLP G++ Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 ++++ ++D ++MLTA+GEE DR+ GL TGADDY+ KPFSP+ELVAR++A++RR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVM----AGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 V ++ +D H+ +E LE+ EF LL FM++P RV++R Q Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 L+ +WG + + ++R VD HIRRLRK +EP + ++TV G GY+F Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L++ED+A I E++ +++ G+ + A D + + PD I+LD MLP +G + Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 K ++ E R +P++MLT +GE D ++GL GADDYI KPF P EL+AR+K V+RR Sbjct: 66 VCKTIRMED--RHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRT 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 I + ++ ++ + + +RV+ E ++M P E +L ++ +P++V +R+QLL+ Sbjct: 124 ILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDR 183 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + RTVDVHI+R+R L + T+RG GYRF Sbjct: 184 VWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRF 226 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +IL+VEDE + +M+ L F+ A A L DL+LLD MLP G G Sbjct: 20 AVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDG 79 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + + +PV++LTAR E D V GLE+GADDY+TKPFS EL AR KA++R Sbjct: 80 LLLCQQLRNDG--QQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLR 137 Query: 122 R-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R +S ++IE +GL +D S V+A + PL + EF LL F HP++V+SR QLL Sbjct: 138 RHLSAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLL 197 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRFS 226 + VWG + TV+ HI RLR L PG + +VQTV G GY+F+ Sbjct: 198 DAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRE-LVQTVWGVGYKFT 244 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 144/230 (62%), Gaps = 10/230 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+++VV+DE PI +++ F L++ G+ A D + AV+ + E PD++LLD MLPG Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++++ ++P++MLTA+ E D+V GLE GADDY+TKPFS +EL+AR+KA + Sbjct: 61 GMEVCREVRKKY---EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 RRISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR ++ I ++ + + P ++ + E +E+ EF+L H+ H +V Sbjct: 118 RRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGY 223 +RE LL VWG + + + RTVDV IRRLR+ +E H + T RG GY Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 146/230 (63%), Gaps = 7/230 (3%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 MA+ +IL+V+DE I E++ LE++G+Q AE + A+ + PDL++LD MLPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G++ + ++ + + P++ML+A+GEE D + GLE GADDYITKPFSPK L+ARI++V Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 120 MRR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 +RR +P I + G+++ P H V + +++ P+EF +L F + P V++ Sbjct: 121 LRRQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 R Q+++ + G + V DR+VDV I LRK LE G ++TVRG GYRF Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYGE--YIETVRGVGYRF 228 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 14/234 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DE I ++ + L+Q G++ V A D A++ ILLD MLP G++ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K L++E + P++++TA+ +E D+V GLE GADDYITKPFSP+E++ARIKAV+RR Sbjct: 65 VTKKLRQEKV--QTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 124 SP-----------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +P A V+ + L +D +RV + + + P EF+LL +F+ R Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 V SR+ +LNHVWG + E R VD+HI LR+ +E R+++TVRG GY F Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 135/236 (57%), Gaps = 15/236 (6%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +L+VEDE IR M+ LEQ F VEAE+ A+ L + DL++LD M+PG G Sbjct: 4 AATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ S ++P++ LTARGEE DRV G E GADDY+ KPFSP+ELV R+KA++R Sbjct: 64 WTTCRKIREFS---EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 122 RISP----------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 R S M E+ + LSL P + + E L + P E+ LL + + Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAG 180 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRF 225 RV SR+ LL+ VWG + RTVD H+RRLR+ L V TVRG+GY+F Sbjct: 181 RVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 135/227 (59%), Gaps = 6/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A RILVV+DE I +V + L + G++ A A+ P LI+LD MLPG SG Sbjct: 8 ADRILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ L+ + TR++ V+MLTAR EE DR+RGL GADDY+TKPFSP ELV R+ A++R Sbjct: 68 FDVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILR 127 Query: 122 RI---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R +P++ + ++ + L +D + V + +E+ PTEFKLL RV R Sbjct: 128 RTGSATPVSADTLV-IGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGH 186 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LL VW ++ RTVD+H++RLR L G +++TVRG GYR Sbjct: 187 LLETVWEAAPDIQTRTVDMHVQRLRSKLGAAGE--LIETVRGFGYRL 231 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 143/229 (62%), Gaps = 10/229 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+L+ +DE IR+++ LE+ + A D + A+ +L++LD M+P GI+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + +IP++MLTA+ +E D++ GL GADDYITKPFS E++ARIKA+MRR Sbjct: 65 VCRRLRNNT---NIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRF 121 Query: 124 ----SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 S +E ++ +GL++D + + V G++ + + E +LL FF ++PE+V+++ Sbjct: 122 LVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKT 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 QL +VW +N +D TV VHIR+LRK +E + + +QTV G GY+F Sbjct: 182 QLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_A9FLR1 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FLR1_SORC5 Length = 235 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV+EDE +++++ + L Q G + + A V + PDL+LLD MLP G + Sbjct: 3 RILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPGTE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L++ T+ IPV++++ARG+E DR+ G E GA DY+ KPFS +ELV R++AV+RR Sbjct: 63 VCRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLRRA 122 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S E IE L +D +HRV E +E+ EFKLL ERV +R LL+ Sbjct: 123 KSSGDGERSIEFGCLRIDEGAHRVWVEREEVELTLLEFKLLVALYEARERVQTRTALLDG 182 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG +V + RTVD H++RLR L G +QTVRG GYRF+ Sbjct: 183 VWGIDVSITTRTVDTHVKRLRDKLRRAGD--YIQTVRGIGYRFAA 225 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 136/228 (59%), Gaps = 8/228 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+ +D + E + L+ + + A D A+ + N PDL++LD M+P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+GEE DR+ GLE GADDYI KPFSP+E+V RIK + RR Sbjct: 65 EVCKEIRKIS---NVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 Query: 123 ISPMAVE-----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++ +++ ++D + + +E +++ P E ++L+ T+ RV SRE Sbjct: 122 VGNANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 ++L+ VWG + + + R VD I+R+RK + G ++TV G GY+F Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKF 229 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 136/221 (61%), Gaps = 4/221 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE + E+V LE+ G+ A D + A+ + DLI+LD MLPG G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETASGKI-DLIVLDIMLPGVDGYEV 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ T +IP+V L+A+ EEED++ GL G DDY+TKP SP+ LVA +KAV+RR S Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRR-S 129 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + ++E+ GL + +R E L + TEF+LL + + HP + ++R+QLL +W Sbjct: 130 GVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIW 189 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V +RTVD HI+ LR+ L G + +QTVRG GYRF Sbjct: 190 KDAMMVTERTVDAHIKNLREKL--GDFAKHIQTVRGVGYRF 228 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 139/226 (61%), Gaps = 6/226 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGG 59 M ++LV+EDE +R+++ LE NG+Q + AE+ ++ NE +ILLD MLP Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG +K ++ T +PV+M+TARGEE D++ G E GADDY+ KPFSP+E+VAR+KA+ Sbjct: 61 SGWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAI 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + R + E QG+ +D S V + +E+ P EF LL + + +V SRE+ Sbjct: 118 LSRTYGSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKC 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LN VWG + Y + RTVD HI++LR+ L G +++TV G GY+ Sbjct: 178 LNEVWGYDFYGDLRTVDTHIKQLREKL--GEKRNLIKTVWGIGYKL 221 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED+A +RE++C+ L + G+ AED A+ P L++LD MLPG G + Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ ES +P++MLTAR E D+V GLE GADDY++KPF +EL+AR+KA++RR Sbjct: 91 LCRLIRTES---SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRS 147 Query: 124 ----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 S +++ L + H VM L+ P EF L F + + RV+SREQL Sbjct: 148 QTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQL 207 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 L VWG + RTVDVHI LR+ +E R + TVRGTGY+F Sbjct: 208 LEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 141/227 (62%), Gaps = 6/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 RRIL+VEDE IR+ V LE+ + D A+ + ++ DL++LD MLP G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ S D+P++MLTA+GE EDR+ GLE GADDY+ KPFSP+ELVAR++A++R Sbjct: 68 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 RISPMA--VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R+ + EV+E L++D + H+V+ G + +++ +EFKLL +P RVYSR +L Sbjct: 125 RVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 + V G + +RT+D H++ LR + + + + TV G GYRF Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 138/223 (61%), Gaps = 3/223 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L+VED + + L + G+ A D + A + + E D +++D +LPG +G + Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F++HL RES+ ++P+++LTA D+VRGL GADDY+TKPF +EL+ARIK+++RR Sbjct: 67 FVEHL-RESLI-NVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRR- 123 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 S + E I +GL L+ S +V + L+M EF LL F+ +P V+SRE+++ V Sbjct: 124 SNITKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKV 183 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 W ++ +DV+I LR L+P G+DR +QTV G GYRF Sbjct: 184 WENEKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRFC 226 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 9/227 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + +++VEDE + +V LE +GF+ D A + P+L++LD M+P G+ Sbjct: 2 KHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +S D+P++M+TAR EE DRV GL GADDY+ KPFSPKELVAR++AV+RR Sbjct: 62 TICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + A E ++ +D R+ ++ L + PTEF+LL F+ H +VYSR QLL+H Sbjct: 119 LDRKAEPEQNDL--FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDH 176 Query: 183 VWGTNVYVEDRTVDVHIRRLRK----ALEPGGHDRMVQTVRGTGYRF 225 + + V DR +D HI+ LR+ A + G VQ V G GYRF Sbjct: 177 INPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRF 223 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 133/225 (59%), Gaps = 10/225 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE I +++ L+++GF+ V + PDLILLD LPG +G++ Sbjct: 8 ILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLEV 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K ++ S +P+ M+TA EE DR+ GLE GADDYI KPFSP+E+VARIKA+ RR+ Sbjct: 68 CKEIRAFST---VPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQ 124 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + V E G +D R+ + L++ PTE++LL +++P RVYSR QLL+ + Sbjct: 125 QIGVPEPTRT-GFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCY 183 Query: 185 GTNVYVEDRTVDVHIRRLRK----ALEPGGHDRMVQTVRGTGYRF 225 + DR +D HI+ LRK AL PG ++ V G GYRF Sbjct: 184 QQEQLIIDRVIDSHIKNLRKKISTALPPG--QEVIHAVYGIGYRF 226 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + + VVED+A I +V + LE GF + + + + P+L LLD M+PG Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++ PV+ LTA+ E D++ GL+ GADDYI KPFSP+EL+ARIKAV+ Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR V+ + +D + + + TEF+LL + HP RV++R+QLL Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 + VW YV R+VDV++RR+R+ +E D R ++TVRG GYRF Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_A6TM13 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TM13_ALKMQ Length = 231 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 135/226 (59%), Gaps = 4/226 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 + ILVVED+ + ++ LEQ+ FQ + AED ++ L N D I+LD LP +G Sbjct: 4 KSILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ +K ++ S+ DIPVV+LT+ ++ D V LE GADDYITKPF +EL+ARI +R Sbjct: 64 LELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLR 123 Query: 122 RISPMAVEEVI--EMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + G++LD T+ V + + + EF+LL F+THP +V+SR+ L Sbjct: 124 RAQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRDDL 183 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L +WG + E R +D+HI LRK L+ +++++T+RG GYR Sbjct: 184 LTKLWGESFVSETRVIDMHISSLRKKLDDSD-NQLIETIRGVGYRL 228 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 135/231 (58%), Gaps = 10/231 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGF-QPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++L+++DE I E++ VL + G + V A + Q ++ PDL++LD MLP G G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++ S +P++ L+A+GEE D++ GL G DDYITKPFSPKE+ R+KA +RR Sbjct: 99 DICKQIRDIS---HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRR 155 Query: 123 IS---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +S P +I+ L+ + E +E+ P E L+ +F+ HP RV S+E L Sbjct: 156 VSYLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETL 215 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRFSTR 228 VWG + + D TV VHIRRLR+ +E P D +V TV+G GY+F + Sbjct: 216 YQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLV-TVKGLGYKFVVK 265 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 8/222 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+ I E++ L Q+GF+ +EA + A++ L P D+ +LDWMLPG +G++ Sbjct: 18 VLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLL--PQADVAVLDWMLPGMTGLEL 75 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + + + ++P++MLTAR EED++ GLE GADDY+TKPFSP+E+VAR+K ++RR Sbjct: 76 AR--RAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRR-- 131 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 M V EVIE L LD + E L + EF LL +P ++RE+LL VW Sbjct: 132 -MGVREVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVW 190 Query: 185 GTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 G + +R VDVHI LR+ L + H R ++TVRG GYRF Sbjct: 191 GVDYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRF 232 >UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechococcus RepID=Q0IC97_SYNS3 Length = 240 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 11/228 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGI 62 +L+ +DE I ++ L+ GF V A D SA+ +L EP DL LLDW + G +G+ Sbjct: 8 VLLADDEVNIVTLLEMELQAEGFTVVTATDGISALKKLREPDTPVDLALLDWNMAGITGL 67 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+ ++ +PV+++T+R E +DR+ LETGADD+I+KPF+ +E++AR+KA++RR Sbjct: 68 DICRRLRETDVS--LPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRR 125 Query: 123 -------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 S +++E+ L+L+ L + EF LL FM HP + S Sbjct: 126 ATFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALS 185 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 R QL+ HVWG + + ++ VDV +R LRK LE GG +R++QTVRG G+ Sbjct: 186 RGQLIQHVWGDDYFGDENVVDVFVRYLRKKLEAGGSERVIQTVRGVGF 233 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 141/226 (62%), Gaps = 7/226 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +R+L++EDE I +++ L+ ++ + + A++ + D ++LD MLP SG Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K ++ +S +P++MLTA+ EE DR+ GL+ GADDY+TKPFSPKELVAR++A+MRR Sbjct: 66 EICKRIRLQSQ---VPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122 Query: 123 ISPMAVE-EVIEMQG--LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + ++ +IE+ G L +D +E +E+ TEFKLL F+ + +V+SR++L Sbjct: 123 TNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDEL 182 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V G + DRT+DVHI+ LR +E + +V TV G GYRF Sbjct: 183 VVKVLGYDYVGYDRTIDVHIKNLRHKIECEYYKYIV-TVYGVGYRF 227 >UniRef50_A6NQN5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQN5_9BACE Length = 230 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 138/229 (60%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA RIL+V+DE +R +V G++ E D +AV + E DL++LD MLPG Sbjct: 1 MAERILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERCREGGVDLVILDIMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ ++ S D+PV+ML+ GEE+D+VRG + G DD++ KPFSP+EL+ R+ A++ Sbjct: 61 GYEALRAIRTFS---DVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAIL 117 Query: 121 --RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR +P ++ + GL +DP + V P+++ P EF LL ++HP R+ Sbjct: 118 KRRRPAPAPDAPILGIGGLVVDPAARLVSVDGRPVDLSPKEFDLLLQLVSHPGTAMPRQT 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 LL VWG + +RT+D HI+++R+A+ P + + T+RG GYRF Sbjct: 178 LLEAVWGPDRPKGERTLDTHIKQVRRAIGP--YAERIVTLRGVGYRFDN 224 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 133/220 (60%), Gaps = 3/220 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV EDE + E++ L + G + + + A++ D +LLD MLPG G + Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + R +P++MLTAR E D +RGL+ GADDY+TKPFS EL+AR++AV RR Sbjct: 62 VARRLRHKG--RQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRT 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P ++ + L+LD SH V G+ P+ + TEF LL M + R SR+ L+ +V Sbjct: 120 GPHRSSTLV-CEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNV 178 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 WG + +E+ T+D IR LR+ ++ GH +++QTVRG GY Sbjct: 179 WGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 145/242 (59%), Gaps = 20/242 (8%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL+VEDE I ++V L + G++ D A N+ E DLI+LD MLPG G++ Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-R 122 + ++ S + IPV+MLTA+ +E +++ GLE GADDY+TKPFSP+EL+AR+KA +R R Sbjct: 63 VCRKIRGNS-SLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 123 ISPMAVE----------------EVIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHF 165 + E E ++ G LS+ P +R + L++ P EF+LL+ Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 166 FMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYR 224 +T+ +V +RE+LL +WG + + RTVDVHIR LR+ + E GG +V+TVRG GYR Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYR 241 Query: 225 FS 226 Sbjct: 242 LK 243 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 11/229 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDE I ++ L + G+Q + V+ + DLILLD MLPG G+ Sbjct: 4 ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLTI 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ S +I ++M+TAR +E DR+ GLE GADDYI KPFSP+E+VAR+K ++RRI+ Sbjct: 64 CREIQEFS---NIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 125 P---MAVEEVIEMQG----LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 P + I Q + L+ +++ + P+E+ EF LL+ + P R+YSR Sbjct: 121 PPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRS 180 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYRF 225 QL++ V+ N V +RT+D HI++LRK L D +VQ+V GY+ Sbjct: 181 QLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA++IL++ED+ I ++ L+ GF+ D + ++ PD ILLD MLPG Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + +K++ PVV++TA+GEE DRV GLE GADDYI KPF PKE+VAR+KAV+ Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 121 RRI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + + E + + +++D H P + EF LL M RV RE L Sbjct: 121 RRRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LN VWG + DRTVDVHIRRLRK + G V+TV+ GYRF Sbjct: 181 LNTVWGDDYEGTDRTVDVHIRRLRKKM--GESAAWVETVKQIGYRF 224 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 20/245 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I+V +DE I ++ LE+ G + AE+ + A+ E PDL++LD M+P Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ +++ T D P++MLTARGEE DR+ GL GADDY+TKPFSP+ELV R+ ++ Sbjct: 61 GLEVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNIL 117 Query: 121 RR----------------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 RR +S A + I ++GLS+ P RV E +E+ EF LLH Sbjct: 118 RRAGWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLH 177 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGY 223 +P +V+SR QLLN VW + TV VH+RRLR+ +EP D ++TV G GY Sbjct: 178 LLAMYPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGY 237 Query: 224 RFSTR 228 + + Sbjct: 238 KLDNK 242 >UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9KAM3_BACHD Length = 231 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RR+LVV+DE ++ ++ + + G+ A +A+++L DL+LLD MLP Sbjct: 1 MERRVLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G I L+ + D+ ++MLTA GE E VRGL GADDYI KPF P EL ARI +V+ Sbjct: 61 GFSLIAQLRH--LQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR +A + E Q L ++ +H + + L + TE+++LH +++P R Y+REQLL Sbjct: 119 RRKGGLASRKGEEKQ-LKVNEKAHDISFAGQSLGLTKTEYRVLHRLLSNPGRTYTREQLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYRF 225 + W V + DR VD HI+ +R LE G D ++QTV G GY++ Sbjct: 178 DLAWDRQVEIYDRNVDAHIKNIRDKLEKVGADSTVIQTVWGVGYKY 223 >UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMR2_CLOBB Length = 227 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 139/223 (62%), Gaps = 5/223 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+DE I E V L++ GF EA D +A+ + DL++LD MLP SG + Sbjct: 4 ILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGEEV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 H++ +S D+P++MLTA+ +EEDR+ G + G DDY+ KPF+ KEL+ R+K++++R Sbjct: 64 CNHIRNKS---DVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSG 120 Query: 125 PMAVEEVIEM-QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + ++++ QG+ ++ +SH V + + + TE+K+L ++P+++YSRE+LL V Sbjct: 121 KIDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESV 180 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 DR +D HI+ LR+ +E D ++++T+ G GYRF Sbjct: 181 IEEYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRF 223 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 139/227 (61%), Gaps = 10/227 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I+VV+DE IR+++C LE G++ ++AE+ A+ L + DLI+LD M+P GI+ Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ E +++P++ML+A+ E+ D++ GL GADDY+TKPF+P EL+AR+K+ +RR Sbjct: 66 CTKIREE---KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYK 122 Query: 125 PMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 V+ ++IE+ L+++ +H V GE+ + + P EF +L + V+S E+ Sbjct: 123 KFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEK 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYR 224 + VW + D TV VHIR+LR+ +E + V+TV G GY+ Sbjct: 183 IYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 141/228 (61%), Gaps = 12/228 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+A +R ++ LE G++ + + ++ P +++LD M+PG G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 ++ L+ S ++PV+MLTA+GE+ DR+ GLE GADDYI+KPF+P+EL+ARIKAV+RR Sbjct: 67 LRDLRPHS---NVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAK 123 Query: 124 -----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +P + + I + G+ L ++ + LE+ TEFKLL M +P R +R+ Sbjct: 124 GPENNNPNSGQ--INVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDD 181 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 L+ VWG + DR++DVHI +LR +P H+ ++TV GTGY F Sbjct: 182 LMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_Q0F0D6 Response regulator in two-component regulatory system with PhoR (Or CreC), regulates pho regulon (OmpR family) protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F0D6_9PROT Length = 254 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL++EDE I ++ L G+ D D A++ L + L++LD MLPG G+Q Sbjct: 28 ILIIEDEDAIARLMGLHLRAAGYTTYRCADGDDALSCLRDGQWRLVVLDRMLPGTGGMQV 87 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ LK IPV+M+TA +RV+GL GADDY+ KPF P ELVAR +A++RR Sbjct: 88 LRWLKASEKRAHIPVLMVTALAMASERVQGLNDGADDYLPKPFEPDELVARARALLRRSR 147 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + +E QG+ LDP V G +++ P E+KLL M P + SR+ LL+HVW Sbjct: 148 IVESGVAVE-QGIQLDPDVPVVFEGNVRVDLRPMEYKLLQMLMKKPGKTRSRDYLLDHVW 206 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G +VYVE RTVDV ++RLRKAL+ G V+TVRG GYRF Sbjct: 207 GNDVYVEPRTVDVTVKRLRKALKELGRKNCVETVRGMGYRF 247 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 2/225 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA IR+++ L G+ V A + AV+ + PDLI++D MLP SG Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K L RE+ R PV+ L+AR ED++ GL G DDY+TKPFS E++AR+ A++RR Sbjct: 89 ATKRL-REAGFR-CPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRT 146 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V+ I + L +D S+ V +++ PTEFKLL +FM +P RV S+ Q+L HV Sbjct: 147 KIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHV 206 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 W + + V+ +I +R+ L + ++ T RG GY TR Sbjct: 207 WDYDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 137/229 (59%), Gaps = 13/229 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDE ++ ++ L + GF+ + A+ + A++ L+ DL ++D M+P G F Sbjct: 4 ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 +K L+ T +PV+ LTAR +E+DR+ GL G DDY++KPFS EL+ARI+AV+RR Sbjct: 64 VKKLRE---TSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 123 ------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 I + E++ ++G+ L+ + V + P+ + EF LL F H +V++R Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 E LL VWG + +RTVD HI+ LR L+P G+ ++QTV G GY+ Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN--VIQTVWGIGYKL 227 >UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=A7VHB9_9CLOT Length = 236 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I +VED+ I+E+ F L+ G+ + S +++ E PDLILLD MLP Sbjct: 13 MQALIYIVEDDMNIQEIEMFALKNTGYVTEGFANAKSFFSRMTEKIPDLILLDIMLPDQD 72 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ ++ L+ T +P++++TA+ E D+V+GL+ GADDY+TKPF EL++R+KA++ Sbjct: 73 GLEIVRKLRERPETVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALL 132 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + ++++ ++ ++LD V + P E+ EF+LL M + V RE ++ Sbjct: 133 RRSKSIQEDQILRLKNVTLDSEKRIVHVNDIPCELTFKEFELLKLLMINAGIVLRREVIM 192 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWGT+ E RT+D+HI+ LR+ L G+ M++TVR GY+ Sbjct: 193 MDVWGTDYEGESRTLDMHIKTLRQKLGDAGN--MIKTVRNVGYKM 235 >UniRef50_C7N7D7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=17 Tax=Bacteria RepID=C7N7D7_SLAHD Length = 232 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 12/231 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPV---EAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 I VED+ IRE+ + L G + A D+ A ++L PDL+LLD MLPG G Sbjct: 2 IYYVEDDQNIRELALYALSSQGLEACGFAAAGDFKKACSKLR---PDLVLLDIMLPGEDG 58 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ + ++PV+MLTA+G E D+V GL++GADDY+ KPF ELV+R KA++R Sbjct: 59 LSILSWIRNNADMAEVPVMMLTAKGTEFDKVLGLDSGADDYLAKPFGMMELVSRCKALLR 118 Query: 122 RISPM----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R + + + + +SL H AG L++ EF LL M +P R ++R Sbjct: 119 RPAMAHPADGRDGAVTIGPISLSVRDHEAFAGTAELDLTLKEFDLLRKLMENPGRAFTRS 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG--GHDRMVQTVRGTGYRFS 226 QLL VW + E RTVD HI+ LR+ L G ++T+RG GYRFS Sbjct: 179 QLLKDVWDVSFVGETRTVDTHIQTLRRKLNDAYPGAGNAIETIRGVGYRFS 229 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 4/223 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL+V+D+ ++ L++ G+ A D A N L++LDWMLPG SG++ Sbjct: 2 RILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAH-NCYAFSLLILDWMLPGKSGVE 60 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F + L+ + + P++MLTAR DR+ GL+TGADDY+TKPF +EL+A ++A++RR+ Sbjct: 61 FCRELREQGVR--TPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRV 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +A I + L +DP + V L++ P E+ +L +TH + SR QL H+ Sbjct: 119 E-LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHI 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 W ++ D +DVH++ LR+ L+P G ++QTVRG G+R S Sbjct: 178 WHADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRIS 220 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 134/226 (59%), Gaps = 8/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + E+V L GF A D +A+ PDL++LD MLPG GI+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R +PV+MLTAR +E DR+ GLE GADDY+TKPFSP+EL R+++V+RR Sbjct: 117 VFRRLRAH---RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA 173 Query: 124 S---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + P A V+ L +D + PL + EF LL F + P R ++R +LL Sbjct: 174 NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 HVWG + Y + TV VHIRRLR+ +E RM+ TV G GYR+ Sbjct: 234 EHVWGWS-YGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 139/228 (60%), Gaps = 6/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A ++LVV+D++ I E++ + L + G+ + A + A++ PDLILLD M+P G Sbjct: 10 APKVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + L++ ++ ++ LTAR EE V E GADDYITKP P+ L++RI A+ R Sbjct: 70 IETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFR 129 Query: 122 RISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGP-TEFKLLHFFMTHPERVYSREQL 179 R + A + IE+ LS++ ++ V G E + P EF+LL F P +V+SR++L Sbjct: 130 REAQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDEL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L +WG ++YV +RTVDVHIR+LR+ L D ++T++G GY FS Sbjct: 190 LQKIWGADIYVLERTVDVHIRKLREKL----GDTYIKTLKGVGYMFSN 233 >UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5 Tax=Deinococci RepID=Q1J251_DEIGD Length = 229 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 4/222 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ++V+EDE+ +RE++ F LE+ G + E A L D ++LDWMLPG SG+ + Sbjct: 4 VVVIEDESTVREVLRFHLERAGLRVSALESVQGAQETLR--GADALVLDWMLPGESGLAY 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+ + R +PV+MLTAR E +RV GLE+GADDY+TKPFS ELVAR++A++RR Sbjct: 62 LRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRAQ 121 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 P ++ + LS+D + L + EF LL F + RVY+R +LL+ VW Sbjct: 122 PDTPQQ-LSHGPLSMDLGAAEARLAGIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVW 180 Query: 185 GTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 G + +RTVD H+ +LR L + R ++TVRG GYR Sbjct: 181 GADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRM 222 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 135/227 (59%), Gaps = 10/227 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D SA+ + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 A + V+E + +D H V EP+ + EF LL + M + RV +R QL+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRF 225 + VWG + + +T+DVH++RLR +E P +V TVRG GY+ Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLV-TVRGLGYKL 226 >UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZIT9_BREBN Length = 226 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+ +D+ +RE++ F L + G+ + D + A L + L ++D M+PG + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ D+PV++LTA+GE D+ +G G DDY+TKPF P EL+ RIKA++ Sbjct: 61 GWELCREIRE---FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR M +++I + +D SH V EE + + EF+LL + P+R+++R+QLL Sbjct: 118 RRYQ-MVSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLL 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + + RT+DVHI+RLR+ +D ++ TVRG GY+ R Sbjct: 177 ELVWGGDTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEVR 224 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 136/224 (60%), Gaps = 6/224 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+V+DE IRE++ L+ G+ EA D +A++ L+ DL++LD M+P G+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ + + PV++LTARGEE D++ GLE GADDY+ KPFSP+ELVAR+KAV+ R Sbjct: 134 CLREMRARHI--NTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 124 SPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 P A + + L++D SH V E + + P EF LL F ++ SRE++L Sbjct: 192 MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQ 251 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VW + + EDRTVD H++ LR L G + TV G GY+F Sbjct: 252 KVWNYDYFGEDRTVDTHVKMLRGHL--GKCRGYIATVWGIGYKF 293 >UniRef50_UPI000196BAD1 hypothetical protein CATMIT_00504 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD1 Length = 223 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 141/226 (62%), Gaps = 9/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +I+VV+DE IRE+V F L++ GF +EA + + A++ + + DL ++D M+PG Sbjct: 1 MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ +++ R+ PV+MLTA+ + +D++RG G DDY+TKPF P EL+AR+K ++ Sbjct: 61 GFELVEQMRQ---YREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTIL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R S + V+++ + D + V E+ + + +F+L +P ++++REQL+ Sbjct: 118 KRYS-INSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLI 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYR 224 +WG + DRTVDVHI+R+R+ L PG V TVRG GY+ Sbjct: 177 EKIWGMDYDGFDRTVDVHIKRIRENLGHLPGFK---VVTVRGLGYK 219 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+LVV+D+ +R++V L++ G+ A D ++A+ E PDL++LD MLPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ ++PVVMLTA GEE DRV GLE GADDY+ KPFSP+ELV R+ +++R Sbjct: 68 LEVCRRLRERG---EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILR 124 Query: 122 --RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R S A EV+ L LD + R L + EF LL F + HP R +SR +L Sbjct: 125 RARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 L VWG + + + TV VH+RRLR+ +EP + TV G GYR+ Sbjct: 185 LEQVWGWS-FGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 144/223 (64%), Gaps = 7/223 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGI 62 ++LVV+DE+ +R++V L ++ + +EAE+ + AV+ E LI+LD M+P G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q K +++ S +P++MLTA+ +E+D + G E G D+YI+KPFSPK LVAR++A++RR Sbjct: 65 QVCKEIRKYS---KVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S ++E +E+ G+ +D +H V + +E+ EF+LL +F+T+ SRE++LN+ Sbjct: 122 -SIQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNN 180 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VW + + + RT+D H+++LR + G ++T+ G GY+F Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKMGDKGD--YIKTIWGMGYKF 221 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 8/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + + I +VED + ++ LEQ+ F + D + Q+ PDLILLD MLPG Sbjct: 9 INKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGAD 68 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ S +P++M+TA+ EE DR+ GLE GADDY+ KPFSP+E+VAR+KAV+ Sbjct: 69 GVTLCREIRTFSA---VPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVL 125 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR E I + L L P +H + + L++ +EF LLH FM HP +V+SR++L+ Sbjct: 126 RRGGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELI 185 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKAL---EPGGHDRMVQTVRGTGYRF 225 + G DR +D HI+ LRK L +PG +++V G GY+F Sbjct: 186 AKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEP--IESVYGVGYKF 231 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 139/225 (61%), Gaps = 8/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+L+VEDE I E + +L+ +GF+ A + +L + ++ILLD MLP G+ I Sbjct: 2 RVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAIN 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 I+ LK E DI +++++A+ + D++ G+E GADDY+ KPF+P+E+VAR+KA +RR Sbjct: 62 EIQTLKNE--FPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRT 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 ++EVI L + P+ + V+ + +++ EF++L P+RVYSRE++L + Sbjct: 120 K--GIKEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETI 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 W V DR VDVHI LRK L G D ++ TVRG GY+FS + Sbjct: 178 WTDEYDVFDRVVDVHINSLRKKL---GKDWII-TVRGVGYKFSKK 218 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 14/232 (6%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L+V+DEA IR+++ L G+ V A D + A+N ++ PD+++LD M+P G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++++S D+P++MLTA G+ DR+ GLE GADDY+ KPFSPKEL ARI+AV+RR Sbjct: 76 VCQEIRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 124 SPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + A +I L++D ++ E + + EF LL ++ + +SR Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRA 192 Query: 178 QLLNHVWGTN--VYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRF 225 +L VWG +V+ R VDVHI RLR LE P D ++ T RGTGY F Sbjct: 193 DILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPD-LILTARGTGYLF 243 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+D+ IRE+V LE+ GFQ EA D A+ ++NE D+++LD M+P G Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 L++ DIP++MLTA+GE +V+G G DDY+ KPF P ELV R+KA+++R Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + V + I++ + L+ + V GE+ + + EF+LL + R SREQL+ VW Sbjct: 151 -ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVW 209 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G + +RT+DVHI RLR+ + ++T+RG GYR Sbjct: 210 GYDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRL 250 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 138/223 (61%), Gaps = 9/223 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+ +DE + + + +E G++ V+A + ++ +N+ DL+LLD M+P G++ Sbjct: 8 ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 ++ L+ +R IPV+M+TA+ +E DRV GL +GADDYI KPFSPKEL+ARI+A +RR Sbjct: 68 LRELR---TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124 Query: 123 -ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + +E ++ + + ++ S +V E + + EF LL FM HPE+V++REQLL+ Sbjct: 125 GYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLD 184 Query: 182 HVWGTNVYVED-RTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 HVWG N RTVD H++ +R + GG +TV G GY Sbjct: 185 HVWGVNYTTGGHRTVDTHMKTMRFKMGSGGD--YFRTVYGVGY 225 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 5/224 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL+VEDE + +++ L + P D + + + PDLILLD MLPG G+ Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++R S DIP+VM+TA+ EE DR+ GLE GADDYI KP+SP+E+VAR+K ++RR Sbjct: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 124 SPM-AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 P +++ L +D + + L++ P EF+LL P +V+SREQLLNH Sbjct: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 ++ V DRT+D HI+ LR+ LE ++ V G GYR+ Sbjct: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+++D+ I M+ L G++ A +N + E PDLI+LD M+P Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K L++++ IP++M+T DRV GLETGADDY+ KPF+ +ELVAR+KA++ Sbjct: 61 GLEVCKRLRKDA---GIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR+ E E + L +D ++ + G +E TEF LL FFM HP++V +RE L Sbjct: 118 RRLDHKKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 ++ VWG + E ++V++ LR LE R++ TVRG GY Sbjct: 178 MDRVWGFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGY 221 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 134/232 (57%), Gaps = 14/232 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVED + E++ L G+Q A D +A++ + PDL++LDWMLP G++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 ++ +++ T+ PV+MLTAR EE D V GLE GADDY+TKPF +EL+AR++A++RR Sbjct: 68 LRTIRQ---TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQ 124 Query: 123 -------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 EV+ L LDP H V ++ L++ PTEF +L + +P R +S Sbjct: 125 RIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFS 184 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 R LL+ +WG + DR+VD + RLRK L G ++TV G GYR Sbjct: 185 RNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGD--AIETVWGLGYRLQA 234 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE +RE++ L +EA D +A+ + + PDL+LLD M+P G Q Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ ++ ES +PV+MLTARG DRV+GL GADDYI KPF +EL AR++AV+RR + Sbjct: 68 LQRIREESA---VPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSA 124 Query: 125 PMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V I L++ P + PL + P EF LL HP +V+SRE+LL+ + Sbjct: 125 GQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRI 184 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG + + RTVD HI+ LR L G ++ TV G GYRF+ Sbjct: 185 WGPDFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFA 225 >UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN2_9GAMM Length = 225 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 138/229 (60%), Gaps = 11/229 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP---DLILLDWMLP 57 M +L+++D+ EM + E + VE D V L+ +LILLD MLP Sbjct: 1 MTHSVLLIDDD---HEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLP 57 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 G G+Q ++ L+++ RD V+MLTARG+++DRV GLE GADDY+ KPF+P+EL+AR++ Sbjct: 58 GIDGMQLLQRLRQQH--RDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVR 115 Query: 118 AVMRRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 A++RR + M EV+ + G +LDP+ V +PL M PTEF +L M ++ S+ Sbjct: 116 ALLRRTANTMMQNEVLTVSGFTLDPSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVSK 175 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +QL G + DR++DVHI +RK L P +R +QTVRG GYR Sbjct: 176 DQLSVAALGRKMGPFDRSLDVHISNIRKKL-PANPER-IQTVRGRGYRL 222 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 10/233 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + +IL+++DE + +++ L ++GFQ + A + +A+ N PDLI+LD +LP +G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ ++L++ + + P++ L+ + + D++ GL G DDYITKPFSP ELVARI A +R Sbjct: 63 LELCQNLRKITES---PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 122 RISPMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + + ++ + GL++D ++ + ++P+ + EF++L HP V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 QL +H+WG + + RTV VHI LRK +E + +++ T++G GY+ T Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDT 232 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RR+LVVED+ + E+ L GF A D A++ PDLI+LD MLPG G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ D+P+++LTA G ++R+ GLE GADDYI+KPFSP+ELV R+++++RR Sbjct: 100 EVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156 Query: 123 -ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 I + E + +LD ++H ++ E L + EF LL F + HP + +SREQLL Sbjct: 157 SIGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLK 216 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 VWG + + TV V +RRLR+ +E H ++ TV G GYR + Sbjct: 217 SVWGWE-FGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 14/232 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN---EPWPDLILLDWMLPGGSG 61 I+VVEDE + +V L + G + D +A+ +L +P PDLI+LD MLP G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + +++ +T P++MLTAR E DRV GLE GADDY+TKPFS +EL AR+ A++R Sbjct: 64 LEICRRVRQSKIT---PILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 122 RISPM-AVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 R+ M A+ I+ L++DP S V + +P+ + EF LLH +P RV+ Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 SR+ LL+ VWG + DRTVD HI RLRK L PG + T+ G GY++ Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 128/230 (55%), Gaps = 7/230 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+L+VED+ I VC+ LE++G A Q PD +LLD LP G+G Sbjct: 9 APRVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNG 68 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + + L++ +P+++L+ARGEE DRV GLE GADDY+TKPFSP+ELVAR +A++R Sbjct: 69 LDWCRELRQAGAA--VPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLR 126 Query: 122 RISPMAVEEVIEMQG----LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R+ + S+DP RV PLE+ E++LL + P R+ SRE Sbjct: 127 RVQRLQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSRE 186 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL+ +WG + DRTVD H++ LR L + T RG GY + Sbjct: 187 FLLDSIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSLT 236 >UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aquificaceae RepID=O66657_AQUAE Length = 228 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RI ++ED+ + +V LE+ GF+ E ++E DLIL+D MLP G + Sbjct: 7 RIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFR 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 LK + ++IPV+ +TA+GEEED+++G E GADDYITKPFS KEL+AR++AV++R Sbjct: 67 IANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRY 126 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 ++ +V++ +G+ LD ++ + + P EFK+L M + R SR L+ + Sbjct: 127 KKVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKL 186 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 W +R +DVH++ +R L G + +++TVRG GY+F Sbjct: 187 WDYERETTERAIDVHVKHIRDKL--GKYKGLIKTVRGVGYKFEN 228 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ I +++D+ IR+++ +E+ G+ ++ + + N+ PD+++LD M+PG Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K +++ S D+P+++++AR E+ D++ GLE G+DDYI KPFSP+EL+AR+K+V Sbjct: 61 GYELCKEIRKIS---DVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVF 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR+ I ++ + + P +V+ E + EF+L+ F + + ++REQLL Sbjct: 118 RRVKMPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + + E R VD ++R+RK L+ G + + T+ G GY+ + Sbjct: 178 EKVWKYDSFTETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVES 224 >UniRef50_C6LCG6 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LCG6_9FIRM Length = 224 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +++LVVED+ ++E++ E G+Q +D + + ++ LILLD MLPG + Sbjct: 1 MDQKLLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLPGEN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ S D+PV+ +TAR +EED + G GADDY+TKPFS L A++ A++ Sbjct: 61 GFTICRKIREIS---DVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R+ + I + +D +H V +GEE E+ P E++LL FF+ +P+R++SREQLL Sbjct: 118 GRMHGSSAGRRIRAGDIEVDVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG + +R VD HI++LRK L G M++T+R +GYR Sbjct: 178 IRFWGYDFDGNERVVDNHIKKLRKLLGKSGS--MIRTIRKSGYR 219 >UniRef50_C7QI13 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=C7QI13_CATAD Length = 241 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 136/241 (56%), Gaps = 20/241 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ IL+VED+ E++ L+ G++ A D SA + + PDL++LD MLPG Sbjct: 1 MSAYILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGAD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + L+R T PV+M+TAR E+D + GL+ GADDY+TKP+SP+ELVARI+ V+ Sbjct: 61 GLTICRWLRRRGET---PVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVL 117 Query: 121 RRISPMAV--------------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFF 166 RR P A E V+++ GL +DP H V+ P+ P EF +L Sbjct: 118 RRSRPAATTAAIATAANATGAKEAVLQVGGLLVDPARHSVLCDGRPVACTPDEFAVLAAL 177 Query: 167 MTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYR 224 P RV++R QLL H G + +R VDVH+ LRK +E P R++ TV G GY+ Sbjct: 178 AAAPGRVFTRAQLLRHTRGFDRASTERAVDVHVLNLRKKIEANPARPTRLL-TVYGVGYK 236 Query: 225 F 225 Sbjct: 237 L 237 >UniRef50_Q6MP48 DNA-binding response regulator PhoB n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MP48_BDEBA Length = 225 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 136/223 (60%), Gaps = 9/223 (4%) Query: 7 VVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIK 66 +VEDE IRE++ L + G++ E + A+N++N L +LDWMLPG SG+ + Sbjct: 1 MVEDEQEIRELMALHLLRQGYRVTECASAEEALNEMNRQNYSLFVLDWMLPGLSGVDIVD 60 Query: 67 HLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR---- 122 +K ++ V+M+TA+ E +D V GLE GADDY+TKPF+P +ARIKA++RR Sbjct: 61 KIKAKNT--GASVLMVTAKTEPQDIVAGLEKGADDYMTKPFNPSVFIARIKALLRRSQVQ 118 Query: 123 -ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 +P A + + + GL ++ S+ + EPL + P+EFKLL + + V +REQL+ Sbjct: 119 AAAPAADDGEVSLLGLKINFKSYEISYNGEPLHLTPSEFKLLGALVQNHGCVLTREQLIE 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 ++ G + V RT+D H+ LRK L G DR ++T+RG GYR Sbjct: 179 NIQGEGINVVGRTIDTHVFGLRKKLGEWG-DR-IETIRGVGYR 219 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 139/228 (60%), Gaps = 7/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +ILVV+DE IR+++ LE++ F A D A++++NE PDLI+LD MLP S Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++ T P++MLTA+G EED+V G GADDY+ KPFS +EL+ARIKA++ Sbjct: 61 GEEVCQKIRQDKQT---PILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAIL 117 Query: 121 RRISPMA--VEEVIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR + A E + G L + P +V+ ++ TEF +L + +P +V++RE Sbjct: 118 RRSNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 QL V G DRT+D HI+ +RK L ++++ TV G GY+F Sbjct: 178 QLAKKVMGLEYKGYDRTIDAHIKNIRKKLNL-EKNQLIITVYGVGYKF 224 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 134/225 (59%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L++EDE + E++ LEQ G++ + D AVN + D++LLD MLPG G++ Sbjct: 3 KVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K +++ S +P++M+TA+ EE DR+ GLE GADDY+ KPFSP+E+VAR+KA +RR+ Sbjct: 63 ICKQVRQFS---GVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRV 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + E G LD R + +++ EF+LL + P RV+ R+ ++ + Sbjct: 120 E-LDQAESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSI 178 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFST 227 + + V DRT+D HI++LRK + + ++ +V G GYRF Sbjct: 179 YADSRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFEN 223 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 7/223 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DE + + + LEQ GFQ A D A+++ DLI+LD MLPG G+ Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ MT P++MLTA+ ++ D++ GLE GADDYITKPF+ +EL+ARI+AV+RR Sbjct: 64 CREVRAAGMT---PIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 125 PMAVEE---VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + ++ + + L L P R PLE+ E+ LL HP VY+R++LL+ Sbjct: 121 AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLD 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGY 223 VWG + ++RTVDVH+RR+R+ LE R ++T G GY Sbjct: 181 LVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 >UniRef50_C6RFL7 Two component transcriptional regulator, winged helix family n=1 Tax=Campylobacter showae RM3277 RepID=C6RFL7_9PROT Length = 224 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILV ED+ + +++C L Q GF P+ A D + A+ L DL++ D M+PG SG + Sbjct: 3 KILVAEDDENLNKIICLKLAQEGFLPLAAFDGEQAIKLLESERADLVITDIMMPGLSGYE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K +K + +PV+M+TA+ E +G TGADDY++KP + KEL+ RI A++RR Sbjct: 63 LTKQIKL--LDESLPVLMITAKSGMEGMEKGFVTGADDYMSKPLNLKELILRINALLRR- 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + +A + + + LD + + G E +E+ P EF LL +++P ++++R +++ + Sbjct: 120 AKIASGKRLRFKNSELDYMALSLKIGGEAVELAPKEFYLLFLLLSNPGKIFTRLEIMQEI 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG + ++R VD H+++LR+ LE G D + TVRG GY+ Sbjct: 180 WGYDTDSDERAVDTHVKKLRRKLE-GCTDFEIATVRGIGYK 219 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 9/226 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+DE I + V + L + G+Q AE+ D A+ DL +LD M+PG +G + Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 ++L+ + + PV+ L+AR E D+V GLE GADDY+ KPF +EL+AR++A++RR Sbjct: 68 CRNLRTRT---NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQ 124 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 PMA E I G++LD H +++ P EF+LL M +V SRE LL Sbjct: 125 MDAEPMAGES-ITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 WG E +TVD HI+RLR L G D +++TVRG GYRF Sbjct: 184 REAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DE+ IR ++ LE G++ + A D A+ + NE PD+++LD MLP G + Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ + + RDIPV+MLTA+ + D++ GL+ GADDY+TKPF+ EL+ R+K + RR+ Sbjct: 79 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 136 Query: 124 SPMAV---EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 V EVIE +++ P +V + +++ EF L F+++P+RV+ R++LL Sbjct: 137 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 196 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG R VD+ ++RLRK L G ++T+ G GY+ Sbjct: 197 EKVWGFEYIGNTRAVDIMVQRLRKKL--GNSGEYIKTIYGVGYKLDC 241 >UniRef50_A6DFF3 DNA-binding response regulator n=2 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFF3_9BACT Length = 230 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + ILVVEDE +E++ L GF A+ + P LILLD ML Sbjct: 1 MKKSILVVEDELVTQELIKHALINAGFDVKITSKGKEAIQIAEDEHPSLILLDGMLDDID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + LK+ T IP+ ML+ R +E ++ GLE GADDYITKPF+PK LVA+I A Sbjct: 61 GTEVCQALKKHISTTSIPIFMLSVRSDENHQLTGLELGADDYITKPFNPKILVAKINAAF 120 Query: 121 RRI----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR + + ++VI +GL ++ V + L + P E+KLL F HP RVYSR Sbjct: 121 RRAHLDHTDFSSDDVITHKGLVMNLADFSVKLDGKLLNLTPVEYKLLFFLCKHPGRVYSR 180 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 E +L + G +V + +RTVDVHI +R+ + G + TVRG GY+ + Sbjct: 181 EAILEKIRGEDVIITERTVDVHILSIRRKV--GDFAPNIITVRGIGYKVA 228 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL++ED I ++ LE + D ++ DLI+LD MLP Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+Q +HL+ +++ P++MLTA+ E DRV GLETGADDY+TKPFS +EL AR+KA + Sbjct: 61 GLQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHL 118 Query: 121 RRI-------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR +P A ++ + L +D T R+ G++ + + EF LL + +HP +V Sbjct: 119 RRTDMSQKESTPQA-DDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 +SRE+LL+ VWG + TV+ HI RLR LE + + V TV G GY+F Sbjct: 178 FSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 136/228 (59%), Gaps = 7/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+D+A + E+ +L G++ + AED A+ L+ PDL++LD M+P S Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +K ++ S D+PV++LTA+ + D+V GLE GADDYITKPF KEL+ARIKA++ Sbjct: 61 GFEVLKKIRERS---DVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117 Query: 121 ---RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R + V+ + L +D ++ V EPL++ PTEFK+L + P + ++R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRA 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYR 224 Q+ V + Y+ R +DVHI RLR +E ++QTV GYR Sbjct: 178 QISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 134/227 (59%), Gaps = 6/227 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R ILVVED+ I + L G++ ++A+D + + + + PDL++LD MLP +G Sbjct: 6 RSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGF 65 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +K L++ RD PVV+L+A+G E D++ GL GADDY+ KPF +EL+ARIKAV+RR Sbjct: 66 EVLKELRQRG--RDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRR 123 Query: 123 ISPMAVEEV---IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 P A + +S+D + V P+E+ EFKLL F+ HP R ++RE+L Sbjct: 124 RYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREEL 183 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 L+ WG + RTVD +R+LR EP R TVRG GYRF Sbjct: 184 LSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 5/219 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I ++V L ++GF D D+ + P + +LD LPG G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR++ Sbjct: 71 CRRLREAGDW--TPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVA 128 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + G++LDP V A +P+++ TEF LL M P RV++RE+LL VW Sbjct: 129 GPPPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVW 188 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 G V RTVDVH+ ++R L P + +++T RG GY Sbjct: 189 GYAVPAGTRTVDVHVAQVRAKLGP---ESVIRTHRGVGY 224 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 141/241 (58%), Gaps = 23/241 (9%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +R IL+ +D+ IRE++ LE G++ EA D A+ + DL+LLD M+P G Sbjct: 8 SRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Q ++ ++ S +PV+M++A+G++ D++ GL+ GADDY+TKPF+P E +AR+++ +R Sbjct: 68 YQVLRRVRETSA---LPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLR 124 Query: 122 RI---------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFF 166 R +P+ V V+ ++ L+LD + + G+EPL++ P EF++L F Sbjct: 125 RAYGMPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLF 184 Query: 167 MTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL--EPGGHDRMVQTVRGTGYR 224 M+HP RV++++Q+ WG V V I +LR L +PG + + TVRG GYR Sbjct: 185 MSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGAY---IATVRGLGYR 241 Query: 225 F 225 Sbjct: 242 M 242 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 131/231 (56%), Gaps = 9/231 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGS 60 RILVV+DE PIR ++ LE GF A + P DL+LLD M+PG Sbjct: 3 RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ ++ L+ D V+++TAR EE D++ GL GADDY+TKPFSP+E+ AR+K+V+ Sbjct: 63 GLEVLRRLR---TVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVL 119 Query: 121 --RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + + L++DP + P+ + EF LLH + P RV+SR Q Sbjct: 120 RRRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQ 179 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFSTR 228 LL VWG + Y ++R VDVHIR LR L D ++ TVRG GY+F R Sbjct: 180 LLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIGR 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 137/227 (60%), Gaps = 11/227 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D +A+ + + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 S M+ + V+E + +D H V + + + EF LL + M + RV +R QL+ Sbjct: 121 DDDSEMS-DGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLI 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRF 225 + VWG + + +T+DVH++RLR +E P +V TVRG GY+ Sbjct: 180 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLV-TVRGLGYKL 225 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + +L+V+DE +R +V LE F +EAE+ + A+ L D+IL+D M+P G Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ +S D+P++ LTARG+E D+V+GL+ G DDYI KPFSP EL+ARI+A+MRR Sbjct: 64 TLCARIREQS---DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 123 -ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 E + L +D +V +P+ + EF LL F H +V+SRE LL Sbjct: 121 AYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLA 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + RTVD HI+ LR L+ +QTV G GY+F Sbjct: 181 QVWGYDYTGNARTVDTHIKTLRMKLKQASD--FIQTVWGIGYKF 222 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 136/235 (57%), Gaps = 12/235 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGG 59 M +R+L+V+DE PI ++ + L + GF D +A+ EP+ D I+LD MLP Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPY-DFIVLDIMLPQL 66 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI+ K L+ S P++M++A+ +E D+V LE GADDY+TKPFSP+EL+AR+KA+ Sbjct: 67 DGIEVCKRLR--SKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAI 124 Query: 120 MRRISPMAV-------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +RR E M L L P H V +E L + P E++LL + M HP Sbjct: 125 LRRTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNM 184 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 +RE+LL +WG + E R VDVHI +LR+ +E + +QT+RG GY+F Sbjct: 185 TLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFK 239 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVVEDE I ++V L ++GF D + + P +LD LPG +G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR Sbjct: 71 CRRLREAGDW--TPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTV 128 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 P VE V + ++LDPT V EP+++ TEF LL M P RV++R +LL Sbjct: 129 GVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAA 188 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VWG + RTVDVH+ ++R L GG +++T RG GY Sbjct: 189 VWGYAAHSSTRTVDVHVAQVRAKL--GGAAGVIRTHRGVGY 227 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 137/226 (60%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I + +L + G++ A D A+N+ PDL+LLD MLP G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+ EE D+V GL+ GADDYITKPF KEL+ARI+AV+RR Sbjct: 62 EVCKEIRKIS---NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 Query: 123 I-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 S ++ + I +D V + + + EF++L ++ P RV++R+ ++ Sbjct: 119 YQSDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIK 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 H+WG N + E R VDV+IR LR+ +E H + + TVR GY+F Sbjct: 179 HIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 145/241 (60%), Gaps = 18/241 (7%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLDWMLPG 58 M+++IL++ED+ + E++ L N ++ A ++ L+ E DLI+LD MLP Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 GSGIQFIKHLK--RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 G+Q + ++ + S T +P+VMLTA+G+ DRV GLE GADDYI+KPF P+EL+ARI Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 117 KAVMRR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +AV+RR + + + LS+ P SH V ++P+ + +F+LLH+F TH + Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 173 VYSREQLL----NHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRFS 226 V +REQL N N+ DR +DVHI RLR +E P R++ TVRG GY+F+ Sbjct: 181 VLNREQLWQAMPNDDSSDNI---DRAIDVHISRLRALIEDNPRQPKRII-TVRGVGYQFA 236 Query: 227 T 227 T Sbjct: 237 T 237 >UniRef50_C6I3R1 Two-component system response regulator n=20 Tax=Bacteroidales RepID=C6I3R1_9BACE Length = 229 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 6/227 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVV+DE + E++ F LE G++ A + A+ ++N L+LLD M+ SG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAL-KMNISSYHLLLLDVMMGEISGFK 63 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 LK++ T +P++ +TA+ E D V G GADDYI+KPFS +E++AR+KAV+RR Sbjct: 64 MANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123 Query: 124 SPMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + E E + Q L +D T +V E + + EF++L + + RV+SRE +L Sbjct: 124 ATSDTEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDIL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + +W VYV DRT+DV+I RLRK + G + + + T G GY F T Sbjct: 184 SRIWSDEVYVLDRTIDVNITRLRKKI--GTYGKRIVTRLGYGYCFET 228 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVVEDEA ++ L + G+ D AV Q E D I+LD MLPG G + Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R PV+MLTARG+ +DR+RGL+ GADDY+ KPFS EL AR++A++RR Sbjct: 91 VCRRLREAG--RWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR- 147 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 AVE V+ + L LDP HRV+ PL++ EF LLH M HP+ V +R +++ Sbjct: 148 --GAVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVD 205 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW VD ++R +R+ ++ +++TVRG GYR T Sbjct: 206 HVWDFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRT 251 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVED+ I E + LE G + A D A PDL++LDWMLPG G+ Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ PV+MLTAR EE+ RVR L GADDY+ KPFS KELVAR++A++RR Sbjct: 74 CERWRKGEYF--APVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + GL +D + +V P+++ EF LL HP RVYSR++LL VW Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 G + RT+DVH+R+LR+ LEP V TV G GY+F+ Sbjct: 192 GYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I VVED+ I E++ LE + E+ + + L E P L+LLD MLPG S Sbjct: 1 MGNYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI +K LK + + IP+++L+A+ E D+V LE GADDY+TKPFS EL +RIK+V+ Sbjct: 61 GIDALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR S + ++ + +++D ++ V E + + E+K+L + + + RV +RE+LL Sbjct: 121 RR-SYKVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD---RMVQTVRGTGYRF 225 N VWG + E RT+D+H++ LR + G D + ++T+RG GY+ Sbjct: 180 NEVWGYDFEGESRTLDMHMKTLRNKI--GSEDDKYKYIKTIRGIGYKL 225 >UniRef50_UPI0001745063 two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745063 Length = 235 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+ +DE +RE+V L + G+ VEA D + Q+ PD I+LD M+PG G Sbjct: 7 ILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVMMPGRDGFGV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ + TR IPV+MLTA+G+ +DR+ GLE GADDY++KPFSPKELV R++A++RR + Sbjct: 67 CQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQALLRRAA 126 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + ++ D + ++ G +P+++ EFKLLH + V R+ +L VW Sbjct: 127 TVGSGSELKEGPFEFDLSGVKLNLGGQPMDLTLLEFKLLHLLASRKGEVVERDFILREVW 186 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G V RT+D H++RLR+ L G H +QT RG GY F Sbjct: 187 GYTEQVRTRTLDTHVKRLREKL--GEHAEWLQTSRGFGYIF 225 >UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B0MNE2_9FIRM Length = 232 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQP---VEAEDYDSAVNQLNEPWPDLILLDWMLP 57 MA RI + ED+ IRE+V L ++ V AED +A + PD+ L D MLP Sbjct: 1 MAERIYITEDDDSIRELVTVALSAYSYEVESFVSAEDCLAATEK---QVPDIFLFDIMLP 57 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 G G+Q +K L+ T++ P++MLTA+ E D+V GLE GADDY+TKPF EL ARIK Sbjct: 58 GMDGVQAVKILRENEQTKNTPILMLTAKSAEIDKVFGLENGADDYLTKPFGIMELAARIK 117 Query: 118 AVMR---RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 A++R R + + + I G++++ + V P+E+ E++LL + + + RV Sbjct: 118 ALLRRSGRSTSDSASDKITAGGITVNTSLREVSRDGRPIELTLKEYELLLYLLKNRARVV 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 SRE+LL VWG + E RT+D+HI LRK L + +++TVRG GYRF Sbjct: 178 SREELLTKVWGIDFVGETRTLDMHIGTLRKKLSDDAENAHLIKTVRGVGYRF 229 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 4/222 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV++D+ +R+ + +LEQ GF+ V+A D + PDL+L+D LPG SG + Sbjct: 15 ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTEI 74 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L+ + P+++L+A +E D+V LE GADDY+ KPF +EL ARI+AV+RR S Sbjct: 75 CKQLRAARVA--TPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRAS 132 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 A +V+ + +D V E L++ P E+ LL +F+ +P+R +R+ +LN VW Sbjct: 133 TDA-RKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVW 191 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 G + RTVD H+ +LR+ LEP + + TV G GYRF Sbjct: 192 GYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 135/224 (60%), Gaps = 9/224 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+D+ I +V EQ F A + L PDLI+LD MLP SG+ Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 IK LKR+ +IPV+ LTAR + D + GLE GADDYITKPF+P+ L+ARIKAV RR Sbjct: 62 VIKKLKRK--YEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRY 119 Query: 123 -ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + P V+++ + +D S+ ++ + E+ EF+LL + +P +V++R+++L+ Sbjct: 120 EMGPKD-RNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILD 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + + + RTVDVHI +LR+ + ++TVRG GY+ Sbjct: 179 RVWGMDFFGDFRTVDVHISKLREKI----GSEFIKTVRGVGYKL 218 >UniRef50_C4KYM3 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYM3_EXISA Length = 224 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 136/225 (60%), Gaps = 9/225 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+V+DE +R ++ LE +G+ +EA D SA++++ E PDL+LLD M+P GI Sbjct: 2 KILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKIEER-PDLVLLDIMMPEVDGIS 60 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + LK +M +PVV+LTAR + E ++GL+ GADDY+TKPF L+ARI+AV+RR Sbjct: 61 LCRQLK--TMDPALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVLRRT 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + I+ L D S RV+ E+ + + P +L F+ HP R+++R L + V Sbjct: 119 RVVN----IQYGPLRYDEESGRVLYEEQEIVLTPKATAILKLFLQHPNRLFNRLDLFDLV 174 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGH--DRMVQTVRGTGYRFS 226 W + + RTVD HIR +R+ L G D ++TV G GYR++ Sbjct: 175 WPYSAESDPRTVDAHIRMIREKLGDAGFPIDDYLKTVWGRGYRWT 219 >UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4N0_9DELT Length = 223 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R L+++D+A + E++ L QNG + A D + + L D++LLD M+PG Sbjct: 1 MAIRALLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ ++ L+ S IPV+MLTARG+E DRV GLE GADDYI KPFS +EL+AR++AV+ Sbjct: 61 GLEVLRRLRARSA---IPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR+ P E + G+ + V E + EF LL + RV +R LL Sbjct: 118 RRMHPEVGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + + V +RTVDVHI +LRK L G D+ ++TVRG GY F Sbjct: 178 HEAGRDDTVVSERTVDVHISKLRKKL---GGDK-IKTVRGVGYVFG 219 >UniRef50_C3RN03 Response regulator arlR n=3 Tax=Bacteria RepID=C3RN03_9MOLU Length = 224 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++L++ED+ I +++C L +Q D A Q+ DL+L+DWMLP G+ Sbjct: 2 NKLLIIEDDVSINKILCHELTNKDYQVDSLYDGKDACKQILSNEYDLVLVDWMLPYKDGV 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q I+ + + P+++LTAR E+ED ++GLE+GADDY+ KPF L+ARI+A +RR Sbjct: 62 QIIQECRNNGYIK--PMILLTARSEQEDIIKGLESGADDYLMKPFQANILIARIEAHLRR 119 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + +I+ + +D + H V G+E + + E+ LL F+ + E V SR++LL Sbjct: 120 YHK-HFKGIIKYLDIKMDLSKHEVFVGDELINLTKVEYDLLQMFIDNKEEVLSRQELLMK 178 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +W N + R VD+H+ +L+ L+ Q+VRG GY+ ++ Sbjct: 179 IWNFNYDGDTRLVDIHVFKLKTKLKDS--QACFQSVRGVGYKLVSK 222 >UniRef50_A6L7N3 Two-component system response regulator n=9 Tax=Bacteroides RepID=A6L7N3_BACV8 Length = 229 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVV+DE + E++ F LE G+ A + A+ ++ +L+LLD M+ SG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEAL-KMELTQYNLLLLDVMMGEISGFK 63 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 LK+ T IP++ +TA+ E D V G GADDYI+KPFS +E++AR+KAV+RR Sbjct: 64 MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123 Query: 124 SPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 SP +E ++ +GL +D T +V + + EF++L + + RV+SRE +L Sbjct: 124 SPTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDIL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VW VYV DRT+DV+I RLRK + G + + + T G GY F Sbjct: 184 AKVWQEEVYVLDRTIDVNITRLRKKI--GEYGKCIVTRLGYGYCF 226 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 133/220 (60%), Gaps = 5/220 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ++V+EDE I E + L G + A + SA+ + E DL++LD MLP G+ Sbjct: 19 VVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMVV 78 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ + + +P+++LTARGE ++RV+GL+ GADDYI KPFS EL+AR+ A+ RR Sbjct: 79 CRRLR--AWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAG 136 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 V+++ GLSL+ + V +E+ PTEF LL FM HP RV++R+ LL+ VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGY 223 G + V+VHI LR+ + G H+R +++TV G GY Sbjct: 197 GFTYVGDSNIVEVHISNLREKI--GDHERKLIRTVYGVGY 234 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 134/222 (60%), Gaps = 3/222 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L+VEDE I + V L++ G+ AED + D+I+LD MLPG G+ Sbjct: 18 KVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGLS 77 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +K L++ T +PV+++TARGE ++R+ GL GADDY+TKPF EL+ARI+A+ RR Sbjct: 78 ILKSLRKSGNT--VPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRS 135 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 S ++ ++++ L ++ ++ V E +E+ EF LL + M P RV +R Q+L HV Sbjct: 136 SGKSLS-MMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHV 194 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + VDV ++RLRK ++ G +++TVRG GYR Sbjct: 195 WGYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_B1HXG4 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=B1HXG4_LYSSC Length = 223 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 134/222 (60%), Gaps = 4/222 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVV+D+ I ++V L + G+Q + AE+ A+ LN PDL ++D M+PG G Sbjct: 2 RILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVMMPGMDGFT 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L ++ DIPV++LTA+GE ED+ RG G+DDY+ KPF PKEL+ RI A++RR+ Sbjct: 62 LTETLTQDY---DIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRM 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + I++ L +D S V+ GEE L + EF+LL + P +V++R ++ V Sbjct: 119 DKKN-QITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQV 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + +++T++ H++R+R+ L + TVRG GY+ Sbjct: 178 WGYDYDGDEQTLNTHVKRVRERLNRFDTAVEIITVRGVGYKL 219 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ RILVVEDEA I + + L + G+ AED LN DL++LDW LP Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ ++ ++++ R PV+ LTAR +RV GL+ GADDY+TKPF+ EL+AR++A++ Sbjct: 61 GIQLLRRFRQKN--RTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR A V+E + D + RV G PL++ EF LL FF+ +P +V SR ++ Sbjct: 119 RR-PGQASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIY 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VW + T++VH++ LR LE G R++QT+RG GY T Sbjct: 178 DTVWDDSYDGLSNTLEVHVKELRHKLEACGP-RVIQTLRGRGYVLET 223 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 10/208 (4%) Query: 22 LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81 LEQ GF A D + + + + P L++LD MLP G+ K +++ S T P++M Sbjct: 22 LEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNT---PIIM 78 Query: 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDP 141 +TAR +E+R+ GLE GADDY+ KPF+ +ELVAR++AV+RR P+ ++++ + LD Sbjct: 79 VTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLKRGPIELDL 138 Query: 142 TSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRR 201 H ++P+E+ + LL FM HP ++ SREQLL V+ + DR++D HI R Sbjct: 139 EQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHIAR 198 Query: 202 LRKALEPGGHDRM----VQTVRGTGYRF 225 LR+ +E HDR + TV G GY+F Sbjct: 199 LRQRIE---HDRTNPQYIVTVYGLGYKF 223 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 9/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V + L++ G+ A D A++++ P +++LD MLP + Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K L+ ++I ++MLTA+ + D++ GLE GADDY+TKPF +EL+ARIK+++ Sbjct: 61 GYDVCKRLE----GKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116 Query: 121 RRISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR+ EE VI + L+++ V LE P EF LL+ +++ VYSR Sbjct: 117 RRLDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSR 176 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 EQ+LN +W + RTVD HI+R+RK L D ++QTV G GY+ Sbjct: 177 EQILNIIWNMDYAGGTRTVDTHIQRIRKKLGNNYQD-LIQTVYGIGYK 223 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 135/232 (58%), Gaps = 8/232 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVN-QLNEPWPDLILLDWMLPGGS 60 AR+ LVVED++ I E+V VL F A D + + +P+ +LI+LD MLP Sbjct: 5 ARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPY-NLIILDLMLPTLD 63 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L+ + TR P++MLTA+ EE D+V GL+ GADDY+TKPF P+E +AR+ A++ Sbjct: 64 GWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALL 123 Query: 121 RRISPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + ++ + L++ P S++ ++ +++ P EF+LL + R REQL Sbjct: 124 RRTTDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQL 183 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKA---LEPGGHDRMVQTVRGTGYRFSTR 228 L VWG RT+D HI+RLR+ LEPG VQTV G GY+ + Sbjct: 184 LEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYT--FVQTVWGVGYKLEVK 233 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+D+ IR+++ +E F+ + A +L DL++LD MLP GSG+ Sbjct: 36 QILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLD 95 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + IP+++LTA E+ DR+ GLE GADDY++KPF+P+ELVARI+AV+RR Sbjct: 96 ACRDLR--AKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRR 153 Query: 124 S----PMAVEEVIEMQGLSLDPTSHRVM-AGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 S P+ +G DP V+ +E+ EF LL F+ P RV SR+Q Sbjct: 154 SETPAPVGASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVLSRDQ 213 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LL+ G + DR++DV I R+R+ L+P G R+++TVR GY+F Sbjct: 214 LLDFTRGRSDTF-DRSIDVLISRVRRKLDPSGTARLLKTVRNGGYQF 259 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+DE P+ +MV L + GF +A AV++ PD+++LD LP G++ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 + ++ S D ++MLTARG E+D++ GL GADDYITKPFS +ELV R+ AV+RR Sbjct: 102 VCRRIRTFS---DCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRP 158 Query: 123 ---ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +P V + + L LDP +H+V GE +E+ TEF+LL P +V +R L Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYRFS 226 + VW T ++R VDVHI LR+ L R + TVRG GYR Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRVG 266 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 131/229 (57%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++ILVV+DE I ++ F L+ G+ D ++ L PDLI+LD MLP Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ + L+++S +P+VMLTA + D++ GL+ GADDY+TKPFSP+EL++RI+A+ Sbjct: 61 GIQVCRELRKQSNA--VPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIF 118 Query: 121 RRISPM---AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RRI + A ++ L++ V+ +E+ P EF+LL F H +V SR+ Sbjct: 119 RRIQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 QLL+ VW + + R VDVHI LR +E + TVR GY+ Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 136/230 (59%), Gaps = 10/230 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VEDE IRE+ LE+ ++ A + + PDLI+LD M+P G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++++S ++P++MLTA+GEE DR+ GL GADDY+TKPFSP+ELV R++ ++RR Sbjct: 62 ELCGEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 118 Query: 123 ISPMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + +A++ EVIE L + P + V+ E +E+ EF++L+ HP++V+SR Sbjct: 119 GNQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 QLL +W TV V + RLR+ LE + + TV G GYRF Sbjct: 179 SQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRF 228 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 134/227 (59%), Gaps = 10/227 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+ILVVEDE I +++ L G+ P D A++++ PDL++LD MLPG G Sbjct: 5 RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGT 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+R S IPV+M+TAR EE DR+ GLE GADDYI KPFSP+E+VARI ++ RR Sbjct: 65 AVCRELRRFST---IPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121 Query: 123 I---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + +P+ +++ +D R+ L + PTEF+L+ + P R+Y+R Q+ Sbjct: 122 MEWGNPVPASGPAQLE---IDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQI 178 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 L+ + + V DR +D H++ +RK + D ++ +V G GYR+ Sbjct: 179 LDLAYHGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRY 225 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 8/231 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+A I +++ L ++ V + D + L + D ++LD MLPG G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + + +MTR P+++ +AR E R+ GLE GADDY+ KPFS ELVAR+KA++RR Sbjct: 65 EICRRAR--AMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 123 ISPMAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + +A + +++ GL++DP + L++ P EF LL+FF HP +V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 LLN VWG + TV+ HI RLR +E + + + TV G GY+ + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ L NGF+ A D S + + DLILLD MLPG G Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+R +++PV+M+TAR EE D +RGL GADDYI KPF+P ELVAR+++ + R Sbjct: 62 AVCRELRR---YKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118 Query: 123 ISPMAV-----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + + V++ L + ++RV ++ + EF+LL F HP V+SRE Sbjct: 119 YERILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSRE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 L VWG + TV VHI R+R+ +E H R ++T+RG GYRF Sbjct: 179 ALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 132/231 (57%), Gaps = 10/231 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V L+ F + D + A N + + DL LLD M+P S Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K ++ + P++MLTA+G E D+++GL GADDYITKPF P E+VAR+KA + Sbjct: 129 GLELCKKIRER---YNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 RR-----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR + + EE++E +GL L+ +H E L + PTEF +L V S Sbjct: 186 RRYKRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVS 245 Query: 176 REQLLNHVWGTNVYVE-DRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYR 224 E+L + +W Y + + T+ VHIR LR+ +E + + ++TV G GY+ Sbjct: 246 AEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE I ++ + LEQ F+ + A D A+ + D I+LD MLP GI Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++ + P+++LTA+ E D++ GLE GADDY+TKPFSP+E++ARI+A+ RR Sbjct: 62 AVTKKIREAKLK--TPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR 119 Query: 123 IS-PM-----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + P+ E I + LS+D T G+ L + P EF+LL +FM +V SR Sbjct: 120 TTQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 E+LLN VWG + E R VD+ + LR+ +E H ++TVRG GY+ Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 142/229 (62%), Gaps = 5/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE +R ++ L + G+ VEA + A+ ++ LI+LD M+P Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + +++E++ +P++MLTAR E D+V+GL+ GADDY+TKPF P+EL+AR+ A++ Sbjct: 61 GWEVCEEIRKENLA--LPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118 Query: 121 RR--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR ++ + + L +D H+V + P+ + P EF+LL + +P++V++R+Q Sbjct: 119 RRAVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 LL +WG + ++RTVD HI+ +R L+ G +++TV G GY+ Sbjct: 179 LLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLK 227 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED + E + LE GF A D + ++ D I+LD +LPG SGI+ Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ E ++ +P++MLTA G E+RV GL GADDY+ KPF +ELVAR++A++RR Sbjct: 62 ICRFLRDEEKSQ-VPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR- 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + + +E ++ L ++ + V EPL + EF LL FM +P V+SREQ+L+ + Sbjct: 120 NQVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 W + VDV++ LRK L+P G+D ++TV GYR Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 23/241 (9%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN---EPWPDLILLDWMLPGGS 60 +IL+VED + EM+ ++ + A D + AV Q + + W D+I LD LPG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSW-DIITLDLNLPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+Q + ++ +S +P++MLTAR E D+V GLE GADDY+TKPFSP L+ARIKA+ Sbjct: 61 GMQVAQKIREQSKV--VPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALH 118 Query: 121 RR---------ISPMAVEEV------IEMQGLSLDPTSHRVMAGEEP-LEMGPTEFKLLH 164 RR VEEV ++ + + +EP L++ P EF LL Sbjct: 119 RRAELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLK 178 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 +P +V+SREQLL VW + ++RTVD HI++LR+ +E G +++QTV G GY+ Sbjct: 179 TLAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVGP-QVIQTVWGVGYK 237 Query: 225 F 225 F Sbjct: 238 F 238 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I V+ED+ I E++ + ++ GF + A + + PD+++LD M+P G++F Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K ++ + IP++MLTA+ E D++ GLE GADDY+TKPFS +EL+AR+KA++RR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 125 ----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 P A E + L + P V +P+ + T+FKLL + +V SR+ ++ Sbjct: 124 SLHFPTAKPEY-KFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYII 182 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW + V DRT+DVHI++LR+ L+ G+ ++T+RG GY++ Sbjct: 183 EHVWAWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWEC 227 >UniRef50_B3QUP3 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUP3_CHLT3 Length = 227 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 5/225 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R IL+ +DE+ + LEQ G+ V A D + L++ P+++LLD ++ +G+ Sbjct: 4 RTILIADDESQYVSWLRTRLEQEGYNIVWARDAAETLAHLSQK-PEVVLLD-LMNDSNGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + L+ + +P++ML ++ EE D V GLE GADD+++K SPK L ARIK V++R Sbjct: 62 ELCRQLRALPEGKSVPIIMLASKSEESDEVLGLELGADDFLSKTTSPKVLSARIKNVLKR 121 Query: 123 ISPMAVEEVIEMQ--GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 A EE+ ++ L +D +SH V E+ + + EF+LL T+ +V+SRE LL Sbjct: 122 YHVNAREELTRLKIGDLEIDRSSHTVRLDEKDIFLPRKEFELLWILATNKGKVFSREMLL 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG N+YV DRTVDVHI ++R+ L G D ++T++G GYR Sbjct: 182 RRVWGENIYVTDRTVDVHICKVRQRLGKFGED-AIETIKGVGYRL 225 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 136/235 (57%), Gaps = 15/235 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+D+ IR ++ L+++GF+ A D L DL++LD MLPG G+ Sbjct: 7 ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLTL 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 + L+ S ++PV+MLTA ++ DR+ GLE GADDY+ KPF+P+ELVARI+ V+RR Sbjct: 67 CRKLRARS---ELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRAR 123 Query: 123 --------ISPMAVEEVIEMQGLSLDPTSHRVMAGEE-PLEMGPTEFKLLHFFMTHPERV 173 P A+ I G +LD ++A + + + E++LL FF+ +P RV Sbjct: 124 ALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRV 183 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFST 227 SR+QLL+ G DR++DV + RLR L G + ++++TVRG GY +T Sbjct: 184 MSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLAT 238 >UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E984_MACCJ Length = 223 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILVV+DEA IR V ++ FQ A + D A+N L+ DL ++D M+PG Sbjct: 1 MQNNILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q + +K++ +PV+MLTAR D+ + G+DDY+TKPF +E++ R +A++ Sbjct: 61 GFQLCEQIKQDYQ---LPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAIL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R AVE+V E L +D S+ V +E L + EF+LL++ + H +V +REQL+ Sbjct: 118 KRYEK-AVEKV-EFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLI 175 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 +WG + ++RTVDVH++R+RK L+ +QTVRG GY+ Sbjct: 176 EEIWGYDFDGDERTVDVHVKRIRKRLDAFDSGVEIQTVRGVGYK 219 >UniRef50_C4ZI38 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=8 Tax=Bacteria RepID=C4ZI38_EUBR3 Length = 226 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 130/221 (58%), Gaps = 7/221 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I +VED+ IRE+ L+ + + E+ +L+E PDLILLD MLP SG Sbjct: 8 IYIVEDDESIREIESIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYDI 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L++ T+DIP++M+TA+ E D ++G + GADDYI KPFS EL+ R+KA++RR Sbjct: 68 VRKLRKRPATQDIPIIMVTAKTTEMDMIKGFDGGADDYIKKPFSIMELITRVKALLRR-- 125 Query: 125 PMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 A EE ++++ L +D H V EP+++ E++LL M V +RE ++ Sbjct: 126 -TAKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRS 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VW T+ E RTVD+HI+ LR L G + ++TVR GY Sbjct: 185 VWDTDFEGETRTVDMHIKTLRHKL--GDYGSRIKTVRNVGY 223 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A RILV ED+ IRE + +LE G+ + A+D + A+ E DL LLD M+PG +G Sbjct: 3 ASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM- 120 + L+R + ++MLTA+GEE D+V GLE GADDYITKPF EL ARI AV+ Sbjct: 63 YDVCRELRRRDPA--LAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 121 --RRISPMAVEEV---IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR +P A E+ + + ++D ++R G + E KLL F HP+ Sbjct: 121 RSRRTAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALP 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 R LLN WG + RT+D HI +LRK +EP +++ TV G GYR+ Sbjct: 181 RNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRY 231 >UniRef50_A6M0T3 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridium RepID=A6M0T3_CLOB8 Length = 228 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 140/226 (61%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGG 59 M +IL+ ED+ R++VC ++ + G+ P+EA D + A+N N DL++LD M+P Sbjct: 1 MDIKILIAEDDNIFRDLVCDIVRKEGYMPIEACDGEEAINMFFNNNDIDLVILDVMMPVY 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + +K ++ +S ++P++MLTA G+E+ V GL+ GADDYI KPFS + VAR+ + Sbjct: 61 DGWEVLKEIREKS---EVPIIMLTALGDEKHEVLGLKKGADDYIGKPFSYEIFVARLNNI 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 ++++ +E I + L + +H+V+ +E +++ P E+ LL + + + V SREQ+ Sbjct: 118 VKKVKKKFSDE-IAVGNLRIYQRTHKVVIDDEEIKLNPKEYNLLLYLVGNINTVLSREQI 176 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ VWG N + RT+D HI+ LR L G ++T+RG+GY F Sbjct: 177 LDKVWGYNFDGDIRTIDTHIKTLRAKLSEQGD--WIKTIRGSGYMF 220 >UniRef50_C6D3C2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D3C2_PAESJ Length = 225 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 135/224 (60%), Gaps = 4/224 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+ +D+ IR +V FV+ + G+Q EA+D AV + +L ++D M+P G + Sbjct: 4 LLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVMMPRIDGFEL 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++++ DIP++MLTA+ + D+ +G G DDY+TKPF P+EL+ R+KA+ RR + Sbjct: 64 CEYIRERY---DIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYN 120 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++ ++I M +++D + V G+ L + EF+LL +P R++SRE+L+ VW Sbjct: 121 QVS-HDLIRMNRITIDRKNVEVTDGQSVLLLPMKEFELLAQLAQYPGRLFSREELIRLVW 179 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + +DRTVDVHI+RLR+ D +QTVRG GY+ + Sbjct: 180 AADFEGDDRTVDVHIKRLRQRFADYAEDFTIQTVRGIGYKVEVK 223 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 7 VVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIK 66 VVED IR +V L + G+ + A D + A Q + P ++LD MLP SG + + Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 67 HLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPM 126 + R +I ++MLTA+ E ++ GL GADDY+ KPFSP+EL+AR++AV+RR Sbjct: 69 WI-RSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQF 127 Query: 127 AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW-G 185 + I + GL + P V+ +P+ + EF LL +FM +P V SREQL+ + Sbjct: 128 C--QKISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPH 185 Query: 186 TNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 T+V + DRT+D HI++LR+ +E + +QTVRG GYRF Sbjct: 186 TDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRF 226 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 13/232 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L EDE I V L++ GF + D A + + D+ILLD M+PG G+ Sbjct: 3 VLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGLFI 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 +K+L++ + R+ PV++LTAR E +DR++GL GADDYI KPF +EL+ARI AV+RR Sbjct: 63 LKNLRQ--VGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 123 --------ISPMAVEEVIEMQGLSLDPTSHRVMAG-EEPLEMGPTEFKLLHFFMTHPERV 173 + P ++ + + S G ++ +E+ EF LL + M P RV Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 ++R Q+L HVWG + VDV I+RLRK ++ G++R +++VRG GYRF Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 132/232 (56%), Gaps = 14/232 (6%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA IR ++ L G++ + A + + A+ + +P L++LD M+P G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L++ES D+P++MLTA GE DR+ GLE GADDY+ KPFSPKEL ARI++V+RR Sbjct: 67 VCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 124 SPMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + +I + L +D +V E + + EF LL ++ +SR Sbjct: 124 DKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRA 183 Query: 178 QLLNHVWGTN--VYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRF 225 +L VWG +V+ R VDVHI RLR LE P D ++ T RGTGY F Sbjct: 184 SILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPD-LILTARGTGYLF 234 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE-AEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+V+DE + ++ LE+ GF + A + P L +LD MLP G G Sbjct: 5 RILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEGY 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q + ++ +S +IP++ L+A+ EE D++ GL G DDYITKPFSPKE+ R+KA +RR Sbjct: 65 QLCQQMRAQS---NIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRR 121 Query: 123 ISPMA--VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +S M V E + ++ V E LE+ E LL F+ +P R+ S+E L Sbjct: 122 VSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLF 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 VWG + + D TV VHIRRLR+ +EP + ++TV+G GYR + Sbjct: 182 TQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_B9JNY4 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNY4_AGRRK Length = 226 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 126/223 (56%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RI +VED+ E + G+ D A L PDL++L+W + Sbjct: 1 MVLRIGIVEDDEAFCESLNQAFTNEGYTVDAWRDGRLAQVSLTARLPDLLVLNWTMTSTF 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI +K ++ + IPV+ML E D++ L GADDY+ KPFS E+V R++ ++ Sbjct: 61 GIDLLKGMRSAPRSAAIPVIMLATDATENDKLLALSLGADDYLVKPFSMLEIVLRVRNLL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR+ + V+++ + LD S+ V+ + +++GPTE+K+L F M +P V++R +L Sbjct: 121 RRMKINESQLVLKVSDIVLDRNSYTVLRSNKEIKLGPTEYKILEFLMRNPGTVHTRTDVL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 +VWG + V+ R VDVHI RLRK + +D +++T+RG GY Sbjct: 181 TNVWGPHATVDPRVVDVHIGRLRKCISNSENDDIIRTIRGAGY 223 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 134/225 (59%), Gaps = 10/225 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I +V+D+ IR++V L++ G+ E + A+ E PDL +LD MLPG +G +F Sbjct: 6 IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYEF 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ S T P++M++AR EE D++ GLE G+DDY+TKPFSP+ELVAR+ ++R Sbjct: 66 CRRIRAGSET---PIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWK 122 Query: 125 PMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 M E + L LD V + E +E+ EF++L HP R +SR++LL+ + Sbjct: 123 QMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLI 182 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 WG + + DR VD IRR+RK L D++ ++TV G GYR T Sbjct: 183 WGFDYFGSDRVVDDLIRRIRKKL-----DKIPLETVWGFGYRLRT 222 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R+LVV+DE I + + F L Q+ + A D + A+ + D+ILLD MLP Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ S ++P++MLTA+G++ D++ GL+ GADDYITKPF+ E+ AR+KA++ Sbjct: 70 GLSVCQQIREFS---NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAIL 126 Query: 121 RRISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR S + +E VI+ + +D S + ++ + + EF LL +P +VYSR Sbjct: 127 RRNSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSR 186 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFST 227 + LL VWG + + RTVDVH+RRLR+ +E + + V T G GY F+ Sbjct: 187 DNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 11/220 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VEDE + + L + D +++ + DLI+LD MLP +G++ Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++++ T P++++TA+ + D+V GL+ GADDYI KPF +EL+ARI+A++RR Sbjct: 63 ICRKIRQQQST---PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR- 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P +++I++ G L +V +E+ TE+ LL+ + V REQ+LNHV Sbjct: 119 QPQ--KDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHV 171 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 WG N VE VDV+IR LR L+P D+M++TVRG GY Sbjct: 172 WGYNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGY 211 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 131/230 (56%), Gaps = 11/230 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I + +C L F D + + D+I+LD MLPG G+ Sbjct: 3 VLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGLDI 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+++ + D P+++LTAR E DRV+GL+ GADDY+ KPF +EL ARI+A++RR Sbjct: 63 LRSLRQQGV--DTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + V+E+ L LD + + + +E+ EF LL M P +V +R QLL HVW Sbjct: 121 GTQ-QHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 185 GTNVYVEDRTVDVHIRRLRK---ALEPGGHDRMV---QTVRGTGYRFSTR 228 G + VDV I+R+R +LE G +MV +++RGTGYR S R Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAG--KMVGAIESIRGTGYRLSIR 227 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV +DE I +++ LEQ GF V ++ + +L P LI+LD MLP G + Sbjct: 7 ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGEEV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 ++ S +P++MLTA+ +EDR+RGL+ GADDY+TKPF+P E+VAR++A++RR Sbjct: 67 CMAVRARSA---VPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTM 123 Query: 124 --SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 P+A L +D S V G E+ TE+KLL HP RV+SRE+L+ Sbjct: 124 LDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFS 226 V+G + + RT+D H++ LR +E + +QTV G GYRF Sbjct: 184 RVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFG 229 >UniRef50_C0YPJ5 DNA-binding response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YPJ5_9FLAO Length = 224 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+++IL+++DE I E++ + LE+ G+ A + + + + E PDLILLD M+P Sbjct: 1 MSKKILLIDDELDILEILSYNLEKEGYDIYTATNGNEGIEKAKEIVPDLILLDVMMPEKD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L++ + +V L+AR EE ++ G + GA+DYI K PK L++++ A++ Sbjct: 61 GIETCQELRKVKELQKTLIVFLSARSEEFSQLAGFQAGANDYIVKLIKPKILISKVNALL 120 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + S ++ ++IE+ L +D + RV + + EF LL+ ++ E+V+ RE++ Sbjct: 121 QLTSQVSDNAKLIEIGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTEKVFKREEI 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L VWG +V V +RT+DVHIRRLR+ L +QT++G GY+ Sbjct: 181 LEKVWGNDVIVGERTIDVHIRRLREKLGIN----TIQTLKGIGYKL 222 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 132/231 (57%), Gaps = 12/231 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL++EDE I +++ + L + GF+ A + +L PDL++LDWMLP SG+ Sbjct: 5 RILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSGLD 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K + + +IP++MLTAR + D++ GLE GADDYITKPF +E+V RI+ ++RR+ Sbjct: 65 ICKQVTAQY---NIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRL 121 Query: 124 SPM------AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + A VI + + + V E +++ P EF LL + R+++R Sbjct: 122 AQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRA 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +LL VWG + + RTVD HI+RLRK L+ ++ TV G GY+F R Sbjct: 182 ELLESVWGYDFPGDMRTVDTHIQRLRKKLDAAD---LITTVFGIGYKFEKR 229 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNG-FQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R I+++ED+ I + + + LEQ G F ++ + + E P+LILLD LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 +G + + L+RE T +P++MLTAR +E D++ GL GADDYITKPFS +EL+ARI AV Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V + L +D V + + + EF LL RV +RE L Sbjct: 121 LRRTEGTP-SSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYL 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ VWG + E RT+DVHIRR+R+ L G D ++T G GYRF Sbjct: 180 LDRVWGIDYDGETRTLDVHIRRVRQKL---GIDGYIETAVGIGYRF 222 >UniRef50_A1VI78 Two component transcriptional regulator, winged helix family n=54 Tax=Bacteria RepID=A1VI78_POLNA Length = 282 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 24/245 (9%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE+ I + + +VL +GF PV A+ + + P L++LD LP +G + Sbjct: 34 RILVVEDESGIADTLQYVLSTDGFAPVWCSTAGQALREFSAGLPALVILDIGLPDLNGFE 93 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 K L+ +P++ LTAR +E DRV GLE GADDYI KPFSP+ELVAR++ ++RR Sbjct: 94 LFKRLQALPGGAQVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRGILRRS 153 Query: 123 ------------------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 +PMAV +LD ++ LE+ E+ +L Sbjct: 154 VRQPLAAPLPEPPQPASGATPMAVRMEAAATPFALDEERRQIRFYGRVLELSRYEYGILR 213 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLR---KALEPGGHDRMVQTVRGT 221 + P RV++R++L + VW DRT+D HI+ LR KA+ P H ++T RG+ Sbjct: 214 LLVLRPGRVFTRDELFDQVWTDGSGSLDRTIDAHIKTLRAKLKAVAP--HAEPIRTSRGS 271 Query: 222 GYRFS 226 GY S Sbjct: 272 GYALS 276 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + R+LVVEDE I + LE+ GF D A+ + D +LD MLPG Sbjct: 44 LGMRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPD 103 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI ++ L+ ++ +P+++L+AR E D++ GL +GADDY+ KPFS ELVAR++A++ Sbjct: 104 GISVLRSLRERGIS--LPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALI 161 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + V ++ L+L+ + V G++ +E+ EF +L M P RV++R Q+ Sbjct: 162 RRTAGIGLS-VYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVC 220 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 VW + VDV+I++LRK ++ G +++QTVRG GY+ Sbjct: 221 ERVWNYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYK 264 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 7/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA + +VEDE I E++ LE++G++ A++ + ++ E PD ++LD MLP Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K ++ +T D+P++ML+A+ EEDR+ G+ GADDY+TKPFSP+E++ R++A++ Sbjct: 61 GEEICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAIL 117 Query: 121 RRISPMAVEEVIEMQG--LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + E+ + +D V+ E + + P EF ++ HP RV+SR Sbjct: 118 RRTRTLNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRAD 177 Query: 179 LLNHVWGTNVYV-EDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFSTR 228 LL + + + +R++DVHI+ LRK LE + + TV G GY+F + Sbjct: 178 LLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGK 229 >UniRef50_Q2SNE0 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNE0_HAHCH Length = 244 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL+VEDE IR + V +G+ A D D +N+ DLILLD MLPG +G + Sbjct: 16 RILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVMLPGKNGYE 75 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ + RD P++MLTA+ +ED + GL GADDY+ KPFS +LV R++AV+RR Sbjct: 76 ICEAVRLKD--RDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRS 133 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++++ + + GL +D + E + E +L + H ER SRE+LLN Sbjct: 134 RSASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLN 193 Query: 182 HVWGT--NVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYRFST 227 VWG ++ +E RTVD+HI +LR+ +E P R+V TVRG GYR T Sbjct: 194 KVWGYARDLDIETRTVDIHIAKLRRKIEADPKQPQRLV-TVRGGGYRLMT 242 >UniRef50_B1YEH2 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YEH2_EXIS2 Length = 222 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED+ I+ ++ LE +G + D + A ++ + +LD M+PG +G + Sbjct: 2 KILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMVPGRTGFE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 L+ ++IP++MLTA GE D+ G GADDYITKPF P+ELV R+ AV RR Sbjct: 62 LCALLRS---NQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRY 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 AV ++ +++D S ++ G L + EF+LLH + P RV+SRE+L+ HV Sbjct: 119 QKAAVP-TMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHV 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 WG + +DRTVDVHI+RLR L ++TVRG GYR + Sbjct: 178 WGLDFMGDDRTVDVHIKRLRTRLHQ-TEAITIETVRGLGYRLEVK 221 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 10/231 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+ IRE+V L++NG + A D + L+ D+I+LD MLPG G+ Sbjct: 7 VLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLVL 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 + L R + P+V+LTAR +E DR+ GLE GADDY+ KPF+ +EL+ARIKAV+RR Sbjct: 67 CREL-RAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 -----ISPMAVEEVIEMQGLSLDPTS-HRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + V +++ LD T+ H + A + + E++LL F+ HP+RV SR Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 +QLLN G + DR++D+ + RLR+ L + ++TVR GY F+ Sbjct: 186 DQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVE-AEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+VED+ + ++ + L Q + VE D + + + + + DL +LDWM+ SG++ Sbjct: 3 ILLVEDDPKLGPLIRYKLSQE-YHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGLE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ + P++MLTAR +DRV GL GADDY+ KPF+ +EL ARI A+ RRI Sbjct: 62 LCEEIR--ASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRI 119 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 M E+ E G++LD +H V + L + EF+LL FF+ H E+V +R+Q++N+ Sbjct: 120 PVSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNY 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + + VD I+ LRK ++ G +++ VRG GYR Sbjct: 180 VWGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 15/230 (6%) Query: 1 MARRILVVEDEAPIREMVC--FVLEQNGFQPV-EAEDYDSAVNQLNEPWPDLILLDWMLP 57 M R +LVVED+ I +++C F E+ + V ED SA + L++LD LP Sbjct: 1 MGRHVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDASVT----LVILDLNLP 56 Query: 58 GG-SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 G G++ + ++ S +P+++L+AR E DRV GLE GADDY+TKPFSP+EL+AR+ Sbjct: 57 GRLDGLEVARAIRHRST---VPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARV 113 Query: 117 KAVMRRISPM-AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 +A+ RR+ + + G+ DP + +V+ P+ + EF LL +F HP + Sbjct: 114 RAIERRVEANPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALT 173 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 R +LL+ VWG Y +DRTVDVH+ +LRK L G + TV G GYRF Sbjct: 174 RRELLDGVWGPEWYGDDRTVDVHVLQLRKKL---GGAIAISTVWGVGYRF 220 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 134/233 (57%), Gaps = 9/233 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+ I +++ L G D D + + DLI+LD MLPG G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L++E P++M+TA+ EE D+V GLE GADDYITKPFS +E++AR+KA+ RR Sbjct: 67 DICRRLRQEKCP--TPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR 124 Query: 123 I------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + A + IE+ + ++P +V E +++ EF+LL F HP R +SR Sbjct: 125 VEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFSTR 228 ++LL+ VWG TV+ HI RLR +EP + R V+TV G GYRF+ R Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 138/222 (62%), Gaps = 6/222 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L+VEDE +++++ + + G A+D A+ L DL++LD M+P G Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K L RE ++P++MLTA+G E+D+++G E GADDY+TKPFSPK L+A+ A++RR Sbjct: 82 VCK-LARE--MSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRS 138 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 SP A + + + + + P+SH+V + + + E++LL+F M +P ++++R+QLLN + Sbjct: 139 SP-APLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRI 197 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + RTVD HI+ LR+ L G + + T+ +GY+F Sbjct: 198 WGYDFEGTTRTVDTHIKTLRQKL--GDEGKHIVTLIRSGYKF 237 >UniRef50_Q1IY67 Two component transcriptional regulator, winged helix family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IY67_DEIGD Length = 227 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ IL+VEDE + E++ Q G++ A D +A+ PDLILLD MLPG S Sbjct: 1 MSALILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ +K ++ + T PV+++TAR EE D++ GLE GADDY+ KPF P+E++AR+KAV+ Sbjct: 61 GLDVLKTVRADGPT---PVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVL 117 Query: 121 RRISPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR E + + L +D + R +PL + P EF+LL + P R +RE+ Sbjct: 118 RRAHAALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LL + +E R VD H+ +R+ L+ ++ TVRG GYR Sbjct: 178 LLAAALPDSDALE-RVVDAHLASVRRKLDAAQAGELLHTVRGVGYRL 223 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 136/222 (61%), Gaps = 7/222 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +++VVED+ +R ++ LE G+ V E A+ + P+L++LD MLP G + Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++L++ + D+ ++MLTA G ++D++ G E GADDY+TKPF +EL+ARIKA++RR Sbjct: 66 VAQNLRK--LKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRR- 122 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +++ + I+ L + V+ + +++ TEF LL + + +RV S+E++L+ V Sbjct: 123 KNISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAV 182 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + Y D TV+V++ +RK L P +++T+RG GY+ Sbjct: 183 WGIDYYGSDNTVEVYVNYIRKKLSP----ELIKTIRGVGYKL 220 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSA--VNQLNEPWPDLILLDWMLPGGSG 61 +IL++EDE + + LE+ G+ A D + A + + N DL++LD MLP G Sbjct: 2 KILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDG 61 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I K L+ ++ P++MLTA+ + ED++ GLE+GADDY+ KPFS +EL+ARI+A++R Sbjct: 62 ISLCKDLRAKNFQA--PILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLR 119 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + V++++ +SLD S RV G+ + + EF +L + M + R+ S+EQ+++ Sbjct: 120 RPKNL-MPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIIS 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 HVWG V+ HI+ LRK LE + +++T+RG GYR Sbjct: 179 HVWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_A9G6M8 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G6M8_SORC5 Length = 233 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 6/227 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVVEDE I E + + L ++GF A +A ++++ DLI+LD MLP GSG Sbjct: 3 KVLVVEDEPAIAESIAYFLRRDGFAATVATTLAAAEREIDKA--DLIILDLMLPDGSGFD 60 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 I +R + I ++L++R E DRV LETGADDY+TKPFSP+E+VAR++AV+RR Sbjct: 61 LIGQARRSAARAAI--IVLSSRDGEADRVAALETGADDYVTKPFSPREIVARVRAVLRRA 118 Query: 124 SPMAVEEVIEMQ-GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + + L +D + R + +++ EF LL + P RV++R QL++ Sbjct: 119 ARPSPSAAAPTPLPLVVDEATRRAYVSGQKVDLTRVEFDLLACMLAAPGRVFTRAQLIDR 178 Query: 183 VWGTNVYVEDRTVDVHIRRLR-KALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + DRT+D H++ LR K +E GG +++TVRG GYR + + Sbjct: 179 VWGDGFAITDRTIDSHVKGLRKKVVEAGGDADLIETVRGVGYRVADK 225 >UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7B4Z9_RUMGN Length = 236 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 135/229 (58%), Gaps = 7/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+A I ++ ++E G+Q + A+ + PD +LLD MLPG +G Sbjct: 8 QKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTGE 67 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + R+ +++PV++L+A+ +D+V+ L GADDYITKPF P+E++AR++A MRR Sbjct: 68 AVLDQI-RQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRR 126 Query: 123 ISPMAV-----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + A +EV + LSL P S +V L + E+ +L+ + +P++VYSRE Sbjct: 127 YTKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSRE 186 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYRF 225 L VW Y ED TV+VH+ LRK ++ + ++TV G G++ Sbjct: 187 HLYEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKL 235 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 135/231 (58%), Gaps = 11/231 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ LE + F+ D S +N++ E DLI+LD MLP G Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA---- 118 ++ + T+D+PV+M++A+ EE D+++GL GADDYITKPFSP ELVAR+K+ Sbjct: 62 DILRIIHD---TKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQN 118 Query: 119 ---VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 + + S VI ++GL ++ S +V+ ++ + + EF LL +P RV+ Sbjct: 119 YERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFG 178 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 +++L +WG + + TV VHIRR+R+ +E + ++TV G GYR Sbjct: 179 KDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >UniRef50_A5V0J0 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexaceae RepID=A5V0J0_ROSS1 Length = 229 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 7/225 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV +D+ ++ F+LE G++ ++A D + + + DL+LLD +P SG Sbjct: 3 ILVADDDLASVKLTSFLLEDAGYKVIKAYDATGVLQAVEQRSLDLVLLDVGMPKVSGFDI 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++R S D+P++ +T G+ +DRV GL+ G DDY+ KPF P EL+AR++AV+RR + Sbjct: 63 CRQIRRIS---DVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRN 119 Query: 125 PMAVEEVIEM-QG-LSLDPTSHRVMAGE-EPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 V V + QG L+LDP H V+ + + + P EF+LL++ M + RV S Q+L+ Sbjct: 120 SDLVNPVTRISQGPLTLDPIEHTVLFEDGRSVVLTPIEFRLLYYLMQNTGRVLSASQILS 179 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 VWG + E V V+IRRLR +EP R + TVR GY+F Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKF 224 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 9/236 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + +++L++ED+ I +V L G A D S + D+I+LD MLP Sbjct: 2 LQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLD 61 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L++ + +P++MLT+R EE+D+V L GADDYITKPFS +EL AR+ A + Sbjct: 62 GLEVCQRLRKNHIL--VPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHI 119 Query: 121 RRISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR P + ++ GL LD +H+V + +E+ EF LL FM +P R Y Sbjct: 120 RRYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTY 179 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFSTRF 229 SR +LL+ VWG + + TV+ HI RLR +E + + TV G GY+F+ + Sbjct: 180 SRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQL 235 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 136/231 (58%), Gaps = 9/231 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ++LV+EDE + ++ + L Q G+ + + + + DLI+LD MLPG + Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L++ + P+++LTAR EE+ V+GL+ GADDYITKPF EL+AR+ AV+ Sbjct: 61 GFEILTRLRQNGV--KTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118 Query: 121 RRIS-----PMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR P+ E+VI + LS+ P + V+ E + + P EF++L + + P V Sbjct: 119 RRTQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVI 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +R+ L+N VWG + RTVDVH+ LRK LE G ++++RG GY+ Sbjct: 179 TRDDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL-GQSVQIESIRGVGYKL 228 >UniRef50_C9M641 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M641_9BACT Length = 237 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILV+EDEAPI +++ L+++G++ A D D+ + + PDL+LLD MLPG G + Sbjct: 6 ILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLPGLEGWEV 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + +++ TRD PV+M+TAR +E + V GL GADDYI KPFS EL+AR++A +RR S Sbjct: 66 CRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRRRS 125 Query: 125 PMAVEEVIEMQG--LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 MA ++ E + + LD + V E+ PTEF++L + P R SR+++ Sbjct: 126 -MARQDAEETKDERIVLDQETGVVRIDGWEAELSPTEFQILELLASRPGRPVSRDRITAV 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + E R +D H+ RLRK L + T+R GYR R Sbjct: 185 VWGLD-PAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEWR 229 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVVED+ + ++ + L + G++ ++A+ +L L+LLD MLPG G + Sbjct: 23 LLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGMDGFEL 82 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +H++ + RD+P++M+TA+GEE DR+ G E G DDY+ KPFS +EL RI+A+++R Sbjct: 83 CRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKRER 142 Query: 125 PMA--VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + +EV+ GL +D H V + L + EFKLL + SRE LL+ Sbjct: 143 RQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLLSD 202 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VW + + RT+D HI R+R+ L G + +++TVRG GYR Sbjct: 203 VWDIDKSISTRTIDTHITRIREKL--GNYGALIKTVRGLGYRL 243 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE I + +C LE G+ A +A++ +++ DL++LD MLP G+Q Sbjct: 2 RILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGLQ 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ S PV++L+ARG +DRV+GLE GADDY+ KPF+ EL+AR++A++RR Sbjct: 62 VLEKMR--SRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRG 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P E +++ L+LD +V G E +++ P EF +L + M + R SR ++ HV Sbjct: 120 QP--TPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHV 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 W + VDV+IR LR ++ +++QTVRG GY Sbjct: 178 WDMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGY 217 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 14/237 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++LVV+DE I ++ + L+Q F A + A++ + D++LLD MLP SG Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +K ++ + D PV++LTA+ E D+V GLE GADDY+ KPFSP+E++ARI AV+RR Sbjct: 62 EVLKRIRMDR--NDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119 Query: 123 I-----------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 +P+ ++ ++D ++V ++ L++ P EF+L+ + + H Sbjct: 120 YEKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFST 227 +V SR+QLL VWG + + R VD+ I LR+ +E + ++T+RG GY FST Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFST 236 >UniRef50_A4XGM2 Two component transcriptional regulator, winged helix family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XGM2_CALS8 Length = 221 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 138/223 (61%), Gaps = 10/223 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVED+ + +++ L+ GF+ + + A+++LNE DLI+LD MLP G + Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFEVINSYTAKGALSKLNEA--DLIILDIMLPDMEGYEV 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +K E+ + IP ++LT++ EE D+++G E GA+DYITKPFS EL+AR+K V+RR S Sbjct: 62 LK----EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR-S 116 Query: 125 PMAVEEVIEMQG-LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 E + + G + + P +V+ E + + EF+LL F + + V SR+++L V Sbjct: 117 KNFEESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKV 176 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG + E RTVDVHI++LR+ L+ + +++TV G GY+ S Sbjct: 177 WGFDFIGETRTVDVHIKQLREKLKD--YKFLIKTVWGVGYKLS 217 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 372 e-102 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 341 1e-92 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B8G179 Two component transcriptional regulator, winged ... 336 4e-91 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 335 7e-91 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 334 2e-90 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 331 1e-89 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 329 5e-89 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 328 7e-89 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 328 9e-89 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 327 1e-88 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 327 2e-88 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 327 2e-88 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 325 7e-88 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 325 7e-88 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 325 9e-88 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 325 1e-87 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 324 2e-87 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 321 9e-87 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 321 9e-87 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 321 1e-86 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 320 2e-86 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 320 3e-86 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 320 3e-86 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 319 3e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 319 3e-86 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 319 4e-86 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 319 4e-86 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 318 7e-86 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 317 2e-85 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 317 2e-85 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 317 3e-85 UniRef50_C4L340 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 316 5e-85 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 315 6e-85 UniRef50_P45189 Phosphate regulon transcriptional regulatory pro... 315 7e-85 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 315 9e-85 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 314 1e-84 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 314 1e-84 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 314 1e-84 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 314 1e-84 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 314 1e-84 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 314 2e-84 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 313 4e-84 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 312 6e-84 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 312 9e-84 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 310 3e-83 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 308 9e-83 UniRef50_B6BUZ2 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 308 1e-82 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 307 1e-82 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 307 1e-82 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 307 2e-82 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 307 2e-82 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 307 2e-82 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 307 2e-82 UniRef50_A3ERN0 Putative two component transcriptional regulator... 307 2e-82 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 307 3e-82 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 307 3e-82 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 307 3e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 306 3e-82 UniRef50_B8G223 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 306 4e-82 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 305 5e-82 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 305 8e-82 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 305 8e-82 UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxal... 305 9e-82 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 304 1e-81 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 304 1e-81 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 304 2e-81 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 304 2e-81 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 304 2e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 303 2e-81 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 303 3e-81 UniRef50_D1C280 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 302 6e-81 UniRef50_A4AL32 Putative two-component system response regulator... 302 7e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 302 7e-81 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 302 7e-81 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 302 8e-81 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 301 1e-80 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 301 1e-80 UniRef50_A9KGK4 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_B8I272 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A4J267 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C4L703 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 301 1e-80 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 301 1e-80 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 301 2e-80 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 300 2e-80 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B8I014 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 299 4e-80 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 299 5e-80 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 299 6e-80 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 299 6e-80 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_D1C683 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 299 7e-80 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 298 9e-80 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 298 1e-79 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 298 1e-79 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 298 1e-79 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 297 1e-79 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 297 1e-79 UniRef50_UPI0001B559F0 two-component system, response regulator ... 297 1e-79 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 297 2e-79 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 297 2e-79 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 297 2e-79 UniRef50_B8G869 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_D1B7S7 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacilla... 297 3e-79 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostri... 296 4e-79 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 296 4e-79 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 296 5e-79 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 296 5e-79 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 295 5e-79 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 295 6e-79 UniRef50_B2UR51 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 295 6e-79 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 295 8e-79 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 295 8e-79 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 295 9e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 294 1e-78 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 294 1e-78 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 294 2e-78 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 294 2e-78 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 293 3e-78 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C4RGF6 Two-component system response regulator receiver... 293 4e-78 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 292 5e-78 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 292 5e-78 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 292 5e-78 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 292 5e-78 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory pro... 292 7e-78 UniRef50_C1SGQ1 Response regulator with CheY-like receiver domai... 292 7e-78 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 292 7e-78 UniRef50_C0WE14 Two-component system transcriptional regulator n... 292 7e-78 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 292 7e-78 UniRef50_Q1ASD3 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter rub... 291 1e-77 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q026B5 Two component heavy metal response transcription... 291 1e-77 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 291 1e-77 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 291 1e-77 UniRef50_A6L7N3 Two-component system response regulator n=9 Tax=... 290 2e-77 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 290 2e-77 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 290 3e-77 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 290 3e-77 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 290 3e-77 UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc... 290 3e-77 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 290 3e-77 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 290 3e-77 Sequences not found previously or not previously below threshold: UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 301 2e-80 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 299 4e-80 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 299 4e-80 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 299 5e-80 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 297 2e-79 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 295 6e-79 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 295 6e-79 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 294 2e-78 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 294 2e-78 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 294 2e-78 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 294 2e-78 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 292 9e-78 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 290 2e-77 UniRef50_A7GLY2 Two component transcriptional regulator, winged ... 290 3e-77 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 228/229 (99%), Positives = 228/229 (99%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVM GEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF Sbjct: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 151/234 (64%), Gaps = 11/234 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEAPIRE++ F L+++G++ A D +A+ + E DL+LLD MLP G++ Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + LK + T IP++MLTA+ EE DRV GLE GADDY+ KPFS +EL+AR+KAV+RR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 124 S--------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 + EE + + GL LD +S++ ++ + + P E++LL +T+P R +S Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 R++LL +WG Y + RTVDVHIR LR L+ ++TVRG GYRF+ R Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 339 bits (871), Expect = 4e-92, Method: Composition-based stats. Identities = 115/227 (50%), Positives = 155/227 (68%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +LVVEDE + ++ + LE+ G+ A D + A+ Q E PDL+++DWMLP S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L+ T ++P++MLTARGEE DRVRGL+TGADDY+ KPFS EL ARI+AV+ Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI P E+VIE +++D +HRV + + +GPTEF+LL + M HP RV+SREQLL Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VWG++VYVE RTVDVH+ RLRKAL ++TVR GY F Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 2/228 (0%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++L+V+D+ + MV LE GF A D + + + + ++LD MLP G Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +P++MLTA+ EE+D++ GL+ GADDY+ KPFSP+ELVAR++A++RR Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 123 ISPMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++ ++E L++D S++V + +++ P EF+LL+ + +PERV++RE++L Sbjct: 124 DQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 +WG + RTVD H++R+RK LEP G D ++QTV G GY+F + Sbjct: 184 KIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 143/228 (62%), Gaps = 4/228 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+A I+E+V + LE+ G+ + AE+ + A+ LN+ PDL+LLD MLP G+ Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 K ++ T +IP++ML+AR E DRV GLE GADDYITKPFSP+EL+ARIKA +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + L + P S+ V E + + EF+LLH FM P +V+SRE LL Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 VWG V + RTVDVHI LR L+ ++++VRG GYR + + Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGYRLAVNY 228 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 139/226 (61%), Positives = 178/226 (78%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE PIR+M+ LE + +EA D A + + + PDLILLDWMLPG SGI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + LKR+ +T +IP++MLTA+GEE+++V+GLE GADDYITKPFSP+ELVAR+KAV+RR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 M + E I+++GL LDP SHRV + P++MGPTE++LL FF+TH ERVY+R QLL+H Sbjct: 124 TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDH 183 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG NVYVE+RTVDVHIRRLRKAL GHDR +QTVRG GYRFS + Sbjct: 184 VWGGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNK 229 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 141/227 (62%), Positives = 177/227 (77%), Gaps = 1/227 (0%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + IL+V+DEAPIREM+ LE G++ +EAE+ A + + PDLILLDWMLPG SG Sbjct: 3 GKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + LKR+ +T DIP++MLTA+GEE+++++GLE GADDYITKPFSP+ELVAR+KAV+R Sbjct: 63 IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R P E IE+ GL LDP SHRV +P EMGPTE++LL FFMTH ER Y+R QLL+ Sbjct: 123 RTGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLD 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG NVYVE+RTVDVHIRRLRKAL ++ +VQTVRGTGYRFST+ Sbjct: 183 QVWGGNVYVEERTVDVHIRRLRKALGEV-YENLVQTVRGTGYRFSTK 228 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVVED+A +RE++C+ L + G+ AED A+ P L++LD MLPG G Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ ES +P++MLTAR E D+V GLE GADDY++KPF +EL+AR+KA++RR Sbjct: 90 ELCRLIRTES---SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 123 ISPMAVEEV----IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + +++ L + H VM L+ P EF L F + + RV+SREQ Sbjct: 147 SQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQ 206 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL VWG + RTVDVHI LR+ +E R + TVRGTGY+F Sbjct: 207 LLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 143/230 (62%), Gaps = 6/230 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++ILVV+D+ I E+V + L + G+ ++A D + A+ + D+ ++D MLPG G Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ L+ R+ PVV L+A+GEE D+V GLE GADDYITKPFS +E++ARIKAV R Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 122 RIS-----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RI + I +GL +D + V ++ + + P EF+LL F + +V+SR Sbjct: 147 RIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSR 206 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + LL+ +WG + Y + RTVDVHIRRLR +E + + + TVRG GY+F Sbjct: 207 DVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 7/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA +R+++ L++ +Q A + A++ + L+LLD M+P G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P++MLTAR +E DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 V++ + + L LD S V +P+ + EF LLH F+ + ++V+SREQLL+ Sbjct: 124 HRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +WG + RTVD HI+ LR L G +QTV G GY+F Sbjct: 184 QIWGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFE 226 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 140/229 (61%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL V+D+ I +++ L + GF+ + A + A+ + + PDL++LD M+PG Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + LK + R++P+++L+AR EE DRV G G DDY TKPFSP EL R+KAV+ Sbjct: 61 GFETYQKLKAQ---REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVL 117 Query: 121 RRISPMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+ V E +++ L+LD T V +E+ P +F+LL ++P RV+++ Sbjct: 118 RRLGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL+ +W ++ Y +D TV VHIRRLR+ +E + ++TV G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ IL+V+DE IR ++ LE+ F+ EA + A E ILLD MLP Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ L+ + P++MLTA+GEE +RV G E+GADDYI KPFSP+E+V R+KA++ Sbjct: 61 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 RRISPMAVE-------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR VE +VIE + L +D +HRV+A + + + P E++LL + P +V Sbjct: 118 RRTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRFSTR 228 + REQLL VW Y + RTVD H++RLR+ L + M+QTV G GY+F + Sbjct: 178 FDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 328 bits (843), Expect = 7e-89, Method: Composition-based stats. Identities = 118/231 (51%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RIL+VEDE I E++ L G++ +A D A + + P++I+LDWMLPG S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+QF K L+ T+ +P++MLTA+ EE D+V GL++GADDY+TKPFSPKELVAR++A++ Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVM-----AGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR P+ + + L LDP+SHRV+ A + + +GPTEF+LL FFM +PERV+S Sbjct: 121 RRQMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHS 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 R LL+ VWG+ VY+E+RTVDVHI+RLR AL P DR ++TVRG+GYR + Sbjct: 181 RASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRIT 231 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 14/237 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++IL+V+D+A I E++ L + F D + A+ Q E P+LILLD MLPG G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + +++ T IP++ML+A+GE D+V GLE GADDY+ KPF KELVAR+KAV+R Sbjct: 64 YEVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 122 RISPMAV----------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 R+ P + + L ++ +++ V + +EM P E +L +F +HP Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPN 180 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +V++REQLL+H+WG + RTVDVHI+RLR+ ++ R+ TV G GY+F + Sbjct: 181 QVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVK 236 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL++ED I ++ LE + D ++ DLI+LD MLP Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+Q +HL+ +++ P++MLTA+ E DRV GLETGADDY+TKPFS +EL AR+KA + Sbjct: 61 GLQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHL 118 Query: 121 RRI------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR S ++ + L +D T R+ G++ + + EF LL + +HP +V+ Sbjct: 119 RRTDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 SRE+LL+ VWG + TV+ HI RLR LE + + V TV G GY+F Sbjct: 179 SREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +IL+V+DE IRE++ L+ G+ EA D +A++ L+ DL++LD M+P Sbjct: 72 MA-KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ ++ ++ + + PV++LTARGEE D++ GLE GADDY+ KPFSP+ELVAR+KAV+ Sbjct: 131 GMTCLREMRARHI--NTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVL 188 Query: 121 RRISP--MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R P A + + L++D SH V E + + P EF LL F ++ SRE+ Sbjct: 189 NRTMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREK 248 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +L VW + + EDRTVD H++ LR L + TV G GY+F Sbjct: 249 ILQKVWNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFDP 295 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 141/231 (61%), Gaps = 6/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+IL+V+DE I MV L + G++ + A + A+N + PDLI+LDWM+P S Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ ++ ++++S IP++MLTA+ EE D++ G E G DDY+ KPFS +EL ARIK ++ Sbjct: 61 GIEVLREIRKKS---QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTIL 117 Query: 121 RRISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +R+ + E V+ L+L P V +PL++ PTEFKLL F+ +P + YSR + Sbjct: 118 KRLEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 LL + G +RT+D HI LRK +E + +QTV G GY+ R Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 143/233 (61%), Gaps = 12/233 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA IR ++ LE+ + EAE+ D A+ + E DLILLD M+PG GI+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ + + P++MLTA+GEE +RV+G E G DDYI KPFSP+E+V R+KA++RR Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 124 SPMA-------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 S + + V+ LS+D +HRV A + + P E++LL+F P++VY R Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRFST 227 E+LL VW + + RTVD H++RLR+ L + + + TV G GY+F Sbjct: 185 EKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 143/233 (61%), Gaps = 11/233 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R+L+ +DE IR+++ LE+ + A D + A+ +L++LD M+P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI+ + L+ + +IP++MLTA+ +E D++ GL GADDYITKPFS E++ARIKA+ Sbjct: 61 DGIEVCRRLRNNT---NIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKAL 117 Query: 120 MRRI------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 MRR + + ++ +GL++D + + V G++ + + E +LL FF ++PE+V Sbjct: 118 MRRFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 +++ QL +VW +N +D TV VHIR+LRK +E + + +QTV G GY+F Sbjct: 178 FTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 117/233 (50%), Positives = 167/233 (71%), Gaps = 5/233 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++ IL+VEDE I E++ L+ G P+ A + A+ + + PD++L+DWMLPG S Sbjct: 3 LSSNILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMS 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + L+ ++ T+ IP++MLTAR EE D+V+GL+ GADDYITKPFSPKEL+ARI+AV+ Sbjct: 63 GVALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVL 122 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGE-----EPLEMGPTEFKLLHFFMTHPERVYS 175 RR +P E +++ GLS+DP+S R + + + +GPTEFKLLH+ M HPERV+S Sbjct: 123 RRRAPQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHS 182 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 R LL+ VWG +V++E+RTVDVHI+RLR+AL P MV+TVRG GYRF+ + Sbjct: 183 RGALLDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRFTAQ 235 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 144/230 (62%), Gaps = 10/230 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+++VV+DE PI +++ F L++ G+ A D + AV+ + E PD++LLD MLPG Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++++ ++P++MLTA+ E D+V GLE GADDY+TKPFS +EL+AR+KA + Sbjct: 61 GMEVCREVRKK---YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 RRISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR ++ I ++ + + P ++ + E +E+ EF+L H+ H +V Sbjct: 118 RRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGY 223 +RE LL VWG + + + RTVDV IRRLR+ +E H + T RG GY Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 141/229 (61%), Gaps = 6/229 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 RRIL+VEDE IR+ V LE+ + D A+ + ++ DL++LD MLP G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ S D+P++MLTA+GE EDR+ GLE GADDY+ KPFSP+ELVAR++A++R Sbjct: 68 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 RISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R+ + EV+E L++D + H+V+ G + +++ +EFKLL +P RVYSR +L Sbjct: 125 RVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + V G + +RT+D H++ LR + + + + TV G GYRF Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFED 233 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 146/237 (61%), Gaps = 14/237 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE---------PWPDLILL 52 A RILVVEDEA IR+MV VL+Q GF A D +A+N PDL++L Sbjct: 23 ASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVL 82 Query: 53 DWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112 D MLP +G+ F + L+R+ +T +P++ML+A+ E DRV GLE GADDY+TKPF +EL Sbjct: 83 DLMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 113 VARIKAVMRRISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHP 170 VAR +A++RR E V+ +GL L P RV+ + L + P EF+LL FM HP Sbjct: 141 VARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 171 ERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 RV+SR+QLL +WG + + +T+DVHIR LR+ +E + + TVRG GYR Sbjct: 201 RRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRLG 257 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 10/232 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VEDE IRE+ LE+ ++ A + + PDLI+LD M+P G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++++S ++P++MLTA+GEE DR+ GL GADDY+TKPFSP+ELV R++ ++RR Sbjct: 62 ELCGEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 118 Query: 123 ------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + ++ EVIE L + P + V+ E +E+ EF++L+ HP++V+SR Sbjct: 119 GNQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 QLL +W TV V + RLR+ LE + + TV G GYRF Sbjct: 179 SQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEP 230 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 197/197 (100%), Positives = 197/197 (100%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDV 197 NHVWGTNVYVEDRTVDV Sbjct: 181 NHVWGTNVYVEDRTVDV 197 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 138/227 (60%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+D+ I +++ LE+ G+ + A D AV++ + PD++LLD MLP G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++R T D+P++MLTAR +E DR+ GLE GADDY+ KPFSPKE++AR++A+ RR+ Sbjct: 62 VCKEIRR---TSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRL 118 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 P + E ++++ LD S + P+E+ PTE+KLL F+ HP +V+SR QL Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + V +RTVD HI+ LRK L ++T+ G GY+ Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++ILVV+DE I ++ F L+ G+ D ++ L PDLI+LD MLP Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ + L+++S +P+VMLTA + D++ GL+ GADDY+TKPFSP+EL++RI+A+ Sbjct: 61 GIQVCRELRKQS--NAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIF 118 Query: 121 RRIS---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RRI A ++ L++ V+ +E+ P EF+LL F H +V SR+ Sbjct: 119 RRIQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 QLL+ VW + + R VDVHI LR +E + TVR GY+ Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + +L+V+DE +R +V LE F +EAE+ + A+ L D+IL+D M+P G Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ +S D+P++ LTARG+E D+V+GL+ G DDYI KPFSP EL+ARI+A+MR Sbjct: 63 FTLCARIREQS---DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMR 119 Query: 122 R-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R E + L +D +V +P+ + EF LL F H +V+SRE LL Sbjct: 120 RAYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + RTVD HI+ LR L+ +QTV G GY+F Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQASD--FIQTVWGIGYKFEV 224 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 140/226 (61%), Gaps = 6/226 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+D+ + E+V E+ GF+ V +D D + + PD+++LD MLPG G+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R IP++MLTA+GEE DRV GLE GADDY+ KPFSP+ELVARIKAV+RR Sbjct: 66 LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++ GL + +V+ E+ P EF LL+ +P+RV++RE+LL Sbjct: 123 QAADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLG 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + + + RTVDVHIRRLR L H+ +QTV G GY+F+ Sbjct: 183 AVWGYDYFGDQRTVDVHIRRLRTKLASLPHE-YLQTVWGVGYKFTP 227 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL++ED + M + GF+ D + E DLI+LD MLP G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ T +P++MLTA+ E D+V G E GADDY+TKPFSP LVARIKAV+RR Sbjct: 62 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRY 118 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLE-MGPTEFKLLHFFMTHPERVYSREQ 178 E++IE + +++ + V+ EP+E + P EF LL++ + +P +V+SREQ Sbjct: 119 KATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 LL VWG Y ++RTVDVHI+RLRK L + TV G GY+F Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFD 225 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R+LVV+DE I + + F L Q+ + A D + A+ + D+ILLD MLP Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ S ++P++MLTA+G++ D++ GL+ GADDYITKPF+ E+ AR+KA++ Sbjct: 70 GLSVCQQIREFS---NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAIL 126 Query: 121 RR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR VI+ + +D S + ++ + + EF LL +P +VYSR Sbjct: 127 RRNSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSR 186 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + LL VWG + + RTVDVH+RRLR+ +E + V T G GY F+ Sbjct: 187 DNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 102/233 (43%), Positives = 147/233 (63%), Gaps = 8/233 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGG 59 MA R+L+VED+ +R++V L + G + D ++A+ L++ P DL+LLD MLPG Sbjct: 1 MA-RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGM 59 Query: 60 SGIQFIKHLKR-ESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 GI + L+ S R +PVVMLTAR +E V GLE GADDYITKPFSP++L +R++A Sbjct: 60 DGISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRA 119 Query: 119 VMRR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 +RR + +E GL +D RV A E +E+ EF++L ++P RVY Sbjct: 120 QLRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVY 179 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 SREQ+++H+WG + E R+ DVHI+ LR+ +EP + R +QTVRG GYRF+ Sbjct: 180 SREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 142/243 (58%), Gaps = 20/243 (8%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+VEDE I ++V L + G++ D A N+ E DLI+LD MLPG G+ Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR- 121 + + ++ S IPV+MLTA+ +E +++ GLE GADDY+TKPFSP+EL+AR+KA +R Sbjct: 62 EVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 122 RI-----------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 R E+V + LS+ P +R + L++ P EF+LL+ Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGY 223 +T+ +V +RE+LL +WG + + RTVDVHIR LR+ + E GG +V+TVRG GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 224 RFS 226 R Sbjct: 241 RLK 243 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 7/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVV+DE + + + LEQ GFQ A D A+++ DLI+LD MLPG G+ Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ MT P++MLTA+ ++ D++ GLE GADDYITKPF+ +EL+ARI+AV+RR Sbjct: 62 TICREVRAAGMT---PIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRR 118 Query: 123 ISPMAVEEV---IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + ++ + + L L P R PLE+ E+ LL HP VY+R++L Sbjct: 119 AEAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQEL 178 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ VWG + ++RTVDVH+RR+R+ LE R ++T G GY Sbjct: 179 LDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 140/230 (60%), Gaps = 7/230 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VED+ I +++ LE+ F + D ++ + E PDLI+LD MLP G++ Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR-- 122 ++++ ++D ++MLTA+GEE DR+ GL TGADDY+ KPFSP+ELVAR++A++RR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMA----GEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 V ++ +D H+ +E LE+ EF LL FM++P RV++R Q Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ +WG + + ++R VD HIRRLRK +EP + ++TV G GY+F Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFED 243 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I + +L + G++ A D A+N+ PDL+LLD MLP G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+ EE D+V GL+ GADDYITKPF KEL+ARI+AV+RR Sbjct: 62 EVCKEIRKIS---NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 Query: 123 ISP-MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++ + I +D V + + + EF++L ++ P RV++R+ ++ Sbjct: 119 YQSDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIK 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 H+WG N + E R VDV+IR LR+ +E H + + TVR GY+F Sbjct: 179 HIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + +L+VEDE IR +V ++ GF +EA D + A+ +E DL +LD M+P Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ ++++ S + P+++LTA+ +EED++ G E GADDY+TKPFSPK L+A+ KA++ Sbjct: 61 GLAVCRNIREVS---NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + +++ GL+++ SH V E L + P E+ LL + ++ SR+++L Sbjct: 118 RRTGTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 ++VWG + + + RTVD +I+RLR+ L + + TVRG+GY+F + Sbjct: 178 DNVWGYDYFGDIRTVDTNIKRLREKLLDKAN--YIATVRGSGYKFEVK 223 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 2/229 (0%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 AR+ LVVED++ I E+V VL F A D + +LI+LD MLP G Sbjct: 5 ARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + TR P++MLTA+ EE D+V GL+ GADDY+TKPF P+E +AR+ A++R Sbjct: 65 WEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLR 124 Query: 122 RISP-MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R + ++ + L++ P S++ ++ +++ P EF+LL + R REQLL Sbjct: 125 RTTDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLL 184 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 VWG RT+D HI+RLR+ + VQTV G GY+ + Sbjct: 185 EQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILVV+DEA IR + LE G++ + A + + PDLI+LD MLPG Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ L+ +S D+ ++MLTAR +E DRV GL GADDY+TKPFSP+ELVAR++A++ Sbjct: 61 GMEITARLREKS---DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117 Query: 121 RRISPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR V V+ + +DP + A + LE+ PTEF LL + RV SRE L Sbjct: 118 RRRRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + VWG + Y DR VDV++ ++R+ +E + +++T RG GYRF Sbjct: 178 IEKVWGADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +R+L+V+DE PI ++ + L + GF D +A+ D I+LD MLP Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ K L+ + P++M++A+ +E D+V LE GADDY+TKPFSP+EL+AR+KA++ Sbjct: 68 GIEVCKRLRSKG--SKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 125 Query: 121 RRIS-------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR E M L L P H V +E L + P E++LL + M HP Sbjct: 126 RRTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMT 185 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 +RE+LL +WG + E R VDVHI +LR+ +E + +QT+RG GY+F Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFK 239 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 14/234 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DE I ++ + L+Q G++ V A D A++ ILLD MLP G++ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K L++E + P++++TA+ +E D+V GLE GADDYITKPFSP+E++ARIKAV+RR Sbjct: 65 VTKKLRQEKV--QTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 124 SP-----------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +P A V+ + L +D +RV + + + P EF+LL +F+ R Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 V SR+ +LNHVWG + E R VD+HI LR+ +E R+++TVRG GY F Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 318 bits (817), Expect = 7e-86, Method: Composition-based stats. Identities = 108/227 (47%), Positives = 150/227 (66%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +I VVEDE + ++ + LE GF+ D A +L E PDL++LDWMLPG S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L++ T +P++MLTARGEE +RVRGL TGADDY+ KPFS EL+AR+KA++ Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + ++ + LD +HRV + +GPTEF+LL F M+ P RV+SR QLL Sbjct: 121 RRAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VWG ++YV++RTVDVH+ RLRKAL +++TVRG GY + Sbjct: 181 DGVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 131/228 (57%), Gaps = 1/228 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + + VVED+A I +V + LE GF + + + + P+L LLD M+PG Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++ PV+ LTA+ E D++ GL+ GADDYI KPFSP+EL+ARIKAV+ Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR V+ + +D + + + TEF+LL + HP RV++R+QLL Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 + VW YV R+VDV++RR+R+ +E R ++TVRG GYRF Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 143/226 (63%), Gaps = 4/226 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVVEDEA IR + LE G++ EAE + A+ L E PDL++LD MLPG G++ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +H++ D +++LTA+G++ D++ GLE GADDY+ KPF+P EL+ARIKA++RR Sbjct: 67 VCQHIRE--TMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR 124 Query: 124 SPMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 L LD +++++ + +E+ PTE+ LL FM +P + RE++LN Sbjct: 125 DRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNG 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +WG + + + +T+DVHIRRLR+ +E R ++T+ G+GYR+ Sbjct: 185 IWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQP 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 139/232 (59%), Gaps = 10/232 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++LV +D+ +RE++ E+ + + A D A+ + + PD+++LD M+P G Sbjct: 32 TMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDG 91 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++++ D P++MLTA+ EE DRV GLE GADDY+TKPFSP+E+VARI+A+MR Sbjct: 92 FEACREIRKK---WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMR 148 Query: 122 RISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R+ P E + L++D V+ E + P EF LL + P V+S Sbjct: 149 RLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 REQLL VWG + + + RT+DVHI+++R+ L+ +D +QTV G GY+F Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD-CIQTVWGIGYKFGV 259 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE + + + L+ G+ D S + E PDLILLDWMLPG SG+ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L++ +P+++LTA+ + DRV GL+ GADDYI KPF+ +EL+AR++A +RR + Sbjct: 66 CKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-N 122 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++++ LSL+ + V G +E+ EF LL + M+HP++V SR+Q+L VW Sbjct: 123 HEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVW 182 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 G + + ++V++R LR LE R++QTVRG GY Sbjct: 183 GYDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 141/234 (60%), Gaps = 11/234 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M + I+VV+DE IR+++C LE G++ ++AE+ A+ L + DLI+LD M+P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI+ ++ E +++P++ML+A+ E+ D++ GL GADDY+TKPF+P EL+AR+K+ Sbjct: 61 DGIEACTKIREE---KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQ 117 Query: 120 MRRISPMAV------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 +RR V +++IE+ L+++ +H V GE+ + + P EF +L + V Sbjct: 118 LRRYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 +S E++ VW + D TV VHIR+LR+ +E + V+TV G GY+ Sbjct: 178 FSIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 139/226 (61%), Gaps = 7/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV +DE +R+++ LE+ G++ V A + A+ +L E L+LLD M+P G+ Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P+++LTAR EE DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + E+ ++ LS+D V + + + EF LL+ F+T+ E+V+SREQLL+ Sbjct: 124 HSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +WGT + RTVD HI+ LR L G +QTV G GY+F Sbjct: 184 QIWGTEYHGNLRTVDTHIKTLRLKLGEAG--GYIQTVWGIGYKFEA 227 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 136/245 (55%), Gaps = 20/245 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I+V +DE I ++ LE+ G + AE+ + A+ E PDL++LD M+P Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ +++ T D P++MLTARGEE DR+ GL GADDY+TKPFSP+ELV R+ ++ Sbjct: 61 GLEVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNIL 117 Query: 121 RRI----------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 RR S A + I ++GLS+ P RV E +E+ EF LLH Sbjct: 118 RRAGWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLH 177 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGY 223 +P +V+SR QLLN VW + TV VH+RRLR+ +EP ++TV G GY Sbjct: 178 LLAMYPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGY 237 Query: 224 RFSTR 228 + + Sbjct: 238 KLDNK 242 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+ I +++ L G D D + + DLI+LD MLPG G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L++E P++M+TA+ EE D+V GLE GADDYITKPFS +E++AR+KA+ RR Sbjct: 67 DICRRLRQEKCP--TPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR 124 Query: 123 ------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 A + IE+ + ++P +V E +++ EF+LL F HP R +SR Sbjct: 125 VEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 ++LL+ VWG TV+ HI RLR +EP R V+TV G GYRF+ R Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNG-FQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R I+++ED+ I + + + LEQ G F ++ + + E P+LILLD LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 +G + + L+RE T +P++MLTAR +E D++ GL GADDYITKPFS +EL+ARI AV Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V + L +D V + + + EF LL RV +RE L Sbjct: 121 LRRTEGTPSS-VYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYL 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ VWG + E RT+DVHIRR+R+ L G ++T G GYRF Sbjct: 180 LDRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >UniRef50_P45189 Phosphate regulon transcriptional regulatory protein phoB n=18 Tax=Pasteurellaceae RepID=PHOB_HAEIN Length = 231 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 121/227 (53%), Positives = 162/227 (71%), Gaps = 2/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+IL+VEDE IREM+ L Q + +EA D+ +A+N++ E P LILLDWMLPG S Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFI+++K++ IP++MLTA+ EED + L GADDYITKPFSP+ L+ARI+AV Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI + I++ LS+D + RV ++ + + TEFKLLHFFM HPE+VYSREQLL Sbjct: 120 RRIYEQQ-SQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLL 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N +W ++ VE RTVD +IRRLR+ L P + +QTVRG+GYRFS+ Sbjct: 179 NRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSS 225 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + +++L++ED+ I +V L G A D S + D+I+LD MLP Sbjct: 2 LQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLD 61 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L++ + +P++MLT+R EE+D+V L GADDYITKPFS +EL AR+ A + Sbjct: 62 GLEVCQRLRKNHIL--VPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHI 119 Query: 121 RRISPMAVEEVIE------MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR P I GL LD +H+V + +E+ EF LL FM +P R Y Sbjct: 120 RRYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTY 179 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTRF 229 SR +LL+ VWG + + TV+ HI RLR +E + + TV G GY+F+ + Sbjct: 180 SRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQL 235 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 100/226 (44%), Positives = 146/226 (64%), Gaps = 5/226 (2%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 L+V+D+A IRE+ LE GF +EA D +A+ QL + D+++LD MLP G Q + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI-- 123 ++R +PV+MLTA G+EEDR+ GL+ GADDY+ KPFSP+ELV+R++AV+RR Sbjct: 62 AEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P +++ GL +D RV AG++ L + P EF LL+F +HP++V+SRE LL+ V Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFSTR 228 WG + + RTVDVH+ RLR+ L ++TV G GYRF + Sbjct: 180 WGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVK 225 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ILVV+DE PI +++ L+ GF ++ + A + +L +LD MLP Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ PV+MLTA+ EE D++ GL GADDYITKPF P ELVAR+KA + Sbjct: 61 GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117 Query: 121 RR------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + P E +I GL LD +H E+ + + P EF +L ++ RV Sbjct: 118 RRFTKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVV 177 Query: 175 SREQLLNHVWGTNVYVED-RTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 S E+L + VWG + TV VHIR LR+ + H + ++TV G GY+ Sbjct: 178 SSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ARRILV +D+ +++ L GF ++A D A++ PDL++LD M+P G Sbjct: 4 ARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ S +P+++LTARG+ D+V G GADDY+TKPF ELV R+ A++R Sbjct: 64 FAVCGRIRAASA---VPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILR 120 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R+ + + L ++ ++ V G+ E+ P EF LL +HP ++RE LL Sbjct: 121 RMPTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLA 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VW + + TV V IRRLR+ +E R ++TV G GY+F Sbjct: 181 RVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 139/233 (59%), Gaps = 7/233 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M++ ILVV+DE I ++ + LEQ +Q V ++ AV + + D +++D MLP Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ K +++ IP++MLTA+ + D++ GLE GADDYITKPFSP+EL++RIK ++ Sbjct: 61 GIEATKQIRK--FDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVIL 118 Query: 121 RRISPM----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR ++ ++ + +++D V E +++ P EFKLL + + +V SR Sbjct: 119 RRTDRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 +Q+L VWG + R VD+HI LR LE H ++++T+RG GY F ++ Sbjct: 179 DQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSK 231 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+VEDE IR+M+ L Q GF+ A D A+ + PDLI+LD MLPG S Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +K ++++ + P+++LTAR +E D++ GLE GADDYITKPFSP+EL RIKAV+ Sbjct: 61 GWEVMKKIRQK---NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + + LS++P + G+ L + PTEFK+L +P +V+SR +L Sbjct: 118 RRSRPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRF 225 V+G +RT+D HI LR +E G + ++TV G GY+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 146/232 (62%), Gaps = 6/232 (2%) Query: 1 MARR---ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP 57 M + +L++ED+ I E++ +E+ G+ A D ++ + E +PD I LD MLP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 G + + ++ ++ + IP++MLT +GE +D+++GL+ GADDY+ KPF P ELVAR+K Sbjct: 61 KIDGWELCQEIRWDN--KKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMK 118 Query: 118 AVMRRISPMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 AVMRR + E+ V+ + GL +D ++ AG++ + M P E LL++ ++P +V++R Sbjct: 119 AVMRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +QLL+ +WG + RT+DVHI+R+R+ L ++T+RG GY+F + Sbjct: 179 QQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEK 230 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVED+ I E + LE G + A D A PDL++LDWMLPG G+ Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ PV+MLTAR EE+ RVR L GADDY+ KPFS KELVAR++A++RR Sbjct: 74 CERWRKGEYFA--PVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + GL +D + +V P+++ EF LL HP RVYSR++LL VW Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 G + RT+DVH+R+LR+ LEP V TV G GY+F+ Sbjct: 192 GYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 93/225 (41%), Positives = 134/225 (59%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ILVV+DE +R+M+ LEQ GF VEA D A+ PDL++LD M+P G + Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F L+ + PV++LTA+ E+ D++ GLE GADDY+TKPF+ +EL+ARI+AV+RR Sbjct: 63 F---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRT 119 Query: 124 SPMA-VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 +V+ + LD T V G +++ P+EF +L M P +V+SR LL+ Sbjct: 120 QQTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDR 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 V G +RT+DVHIR LR +E H + ++TV G GYRF+ Sbjct: 180 VSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 112/223 (50%), Positives = 158/223 (70%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + R+LVVEDE I+E++ L++NGF +SA L P L++LDWMLPG +G Sbjct: 7 SSRVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNG 66 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + + L+R TR +P+++LTARGEE DRV GLE+GADDY+ KPFSP+ELVAR+ A++R Sbjct: 67 LAWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLR 126 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + GL +D +HRV A E + +GPTEF+LL F+T+PERV+SR+ LL+ Sbjct: 127 RSYGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLD 186 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 +WG +VE+RTVDVHIRRLR+ LE G+ ++++TVRG GYR Sbjct: 187 QIWGRQSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYR 229 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + E+V L GF A D +A+ PDL++LD MLPG GI+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R +PV+MLTAR +E DR+ GLE GADDY+TKPFSP+EL R+++V+RR Sbjct: 117 VFRRLRAH---RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA 173 Query: 124 S---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + P A V+ L +D + PL + EF LL F + P R ++R +LL Sbjct: 174 NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 HVWG + + TV VHIRRLR+ +E RM+ TV G GYR+ Sbjct: 234 EHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 136/229 (59%), Gaps = 5/229 (2%) Query: 1 MAR--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R ++L++ED+A I E++ +++ G+ + A D + + PD I+LD MLP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 +G + K ++ E R +P++MLT +GE D ++GL GADDYI KPF P EL+AR+K Sbjct: 61 LNGWEVCKTIRME--DRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKT 118 Query: 119 VMRRI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 V+RR + ++ ++ + + +RV+ E ++M P E +L ++ +P++V +R+ Sbjct: 119 VLRRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQ 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 QLL+ VWG + RTVDVHI+R+R L + T+RG GYRF Sbjct: 179 QLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFE 227 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +I+V+EDE I ++ F L+ G+ A D + + PDL+LLD MLPG S Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K +K IP++MLTARG+E DR+ G E GADDY+ KPFSP+EL+ RIK V+ Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 121 RR-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR ++ + + GL+ D ++ ++ + PTEF L F+ + +V SREQL Sbjct: 121 RRNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 L++ WG RTVD H+RRLRK L P ++TVRG GYR Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD--WLETVRGIGYRMK 225 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 14/237 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++LVV+DE I ++ + L+Q F A + A++ + D++LLD MLP SG Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +K ++ + D PV++LTA+ E D+V GLE GADDY+ KPFSP+E++ARI AV+RR Sbjct: 62 EVLKRIRMD--RNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119 Query: 123 I-----------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 +P+ ++ ++D ++V ++ L++ P EF+L+ + + H Sbjct: 120 YEKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +V SR+QLL VWG + + R VD+ I LR+ +E + ++T+RG GY FST Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFST 236 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 99/230 (43%), Positives = 138/230 (60%), Gaps = 7/230 (3%) Query: 1 MARR--ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M ++ IL+VEDE I E + LE GF+ + D A + + PDL+LLD MLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G++ K L+ S IP++MLTAR EE DR+ GLE GADDYI KPFSP+E+VAR+KA Sbjct: 61 KDGMEVCKELRSFS---QIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKA 117 Query: 119 VMRRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 V+RR + P + I + LD S V G L++ P+EF +L M+ P RV+SR Sbjct: 118 VLRRSNTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRN 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 +LL+ G+ DRT+D HIR LRK ++ D + ++ G GY+F+ Sbjct: 178 ELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 141/235 (60%), Gaps = 15/235 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQ-----LNEPWPD-----LILLDW 54 ILV+EDE IRE V L++ G+ + A D A+N L E P+ LI+LD Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 55 MLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVA 114 MLPG +G+ + ++R+ T +P++M++A+G E DRV GLE GADDY+ KPF +E++A Sbjct: 84 MLPGINGLDLCRLIRRQGCT--VPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 115 RIKAVMRRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 R +A++RR + V+ + L L P R E L + P E+KLL FM HP R Sbjct: 142 RCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRR 201 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 V+ REQLL+ VWG + + +TVDVHIR LR+ +E H + + TVRG GYRF Sbjct: 202 VWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRFG 256 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 139/229 (60%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +ILVV+DE IR+++ LE++ F A D A++++NE PDLI+LD MLP S Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++ + P++MLTA+G EED+V G GADDY+ KPFS +EL+ARIKA++ Sbjct: 61 GEEVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAIL 117 Query: 121 RRISPMAVEEVIEM---QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR + A + I + L + P +V+ ++ TEF +L + +P +V++RE Sbjct: 118 RRSNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 QL V G DRT+D HI+ +RK L ++++ TV G GY+F Sbjct: 178 QLAKKVMGLEYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I V+ED+ I E++ + ++ GF + A + + PD+++LD M+P G++F Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K ++ + IP++MLTA+ E D++ GLE GADDY+TKPFS +EL+AR+KA++RR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 125 PMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + + + L + P V +P+ + T+FKLL + +V SR+ ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW + V DRT+DVHI++LR+ L+ G+ ++T+RG GY++ Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWEC 227 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 111/221 (50%), Positives = 156/221 (70%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE I+E++ L++ GF + A L +P P LI+LDWMLPG SG+ Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + + L+R T+ +P+++LTARGEE DRV GLE+GADDY++KPFSP+EL AR++A++RR Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + + L +D +HRV +E + MGPTEF++L F T+P+RVYSRE LL+H+ Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG ++E+RTVDVHIRRLR+AL G+ +++TVRG GYR Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYR 232 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 130/237 (54%), Gaps = 13/237 (5%) Query: 1 MARR-ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R IL+ ED+ I E++ L + G+Q ++A D AV + DL++LD M+P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + ++ ++ + +P++ L+A+ + D++ GL GADDY+TKPF+P EL+AR+ A Sbjct: 63 DGYEVVRVIREQQYR--MPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120 Query: 120 MRR--------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 +RR +P I GL++D V + +++ P EF +L+ +HP+ Sbjct: 121 LRRFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPK 180 Query: 172 RVYSREQLLNHVWGTNVY-VEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 +V+S E + VWG Y TV VHIR LRK L E H + ++TV G GY F Sbjct: 181 KVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 101/229 (44%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVN-QLNEPWPDLILLDWMLPGGS 60 + IL+VEDEA + + + L++ G++ A D +A+ EP PD ILLD MLP S Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + KHL+ + TRD+PV+M+TA+G E DRV G E GADDY+ KPFS +EL+ RI+A++ Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 121 RRI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR P ++I L +D HRV E+ + + EF+LL+ F++ RV +R+ L Sbjct: 130 RRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDAL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 L+ VWG V RTVD H++RLR+ L G R V+T+RG GYRF R Sbjct: 190 LSDVWGIEADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRFRDR 236 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 144/228 (63%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA+ ILV++DEA +RE++ L+ GF EA++ + + PDLILLD M+P Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ F ++ + + P+++LTA+ E+ D++ GLE GADDYITKPF+ +E++AR++AV+ Sbjct: 61 GLDF---MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + +V+ + + L+ ++ +M GE+ +++ P+EF++L M P V+SR L Sbjct: 118 RRSYKAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L+ G +RT+DVHIR LR +EP + R ++TV G GYRF+ Sbjct: 178 LDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+VED++ + E + + E+ GFQ A D + + PDLI+LD MLPG G Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 + + +E+ +P+V+LTA +E R+ GLE GA DY+ KPFS EL+AR++A++R Sbjct: 63 VCRAVAKETT---VPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWN 119 Query: 122 -RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R V+ + + LD S RV + +E+ EF LL M + SR+ LL Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG++ +RT+DVH+R LR+ LEP + +++TVRG GY F Sbjct: 180 ERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQD 227 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 135/234 (57%), Gaps = 11/234 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R IL+ +DEA I +++ LE+ G+ V+A D + A++ + DL++LD M+P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + + ++ + +P++ L+A+ + D+V GL GADDY+TKPF+P ELVAR+ A Sbjct: 61 DGYEVTRQIRAKH---HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 MRRI------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 +RR + +E+ G+ +DP V E +E+ P EF +L+ +HP++V Sbjct: 118 LRRFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 Y+ E + VW + + TV VHIR LRK L E +++++TV G GY F+ Sbjct: 178 YNVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 5/222 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + EM+ VL + G++P D + AV + PD++LLD MLPG +G+Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ +S +P+VMLTA+G+ D V+GLE GADDY+TKPF P ELVAR++A +RR Sbjct: 77 ICQDIRTQST---VPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRG 133 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 E + + + +D +H+V P+ + P EF LL P +V++RE LL V Sbjct: 134 ETGQAEN-LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQV 192 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYR 224 WG + R V+VH++RLR +E +V TVRG GY+ Sbjct: 193 WGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 96/259 (37%), Positives = 140/259 (54%), Gaps = 36/259 (13%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDEA I E++ L + GF+ D +A+++ PDLI+LD M+PG G++ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 +++++ +D ++MLTARGEE DR+ GL TGADDYI KPFSP+ELVAR++AV+RR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVM---------------------------------AG 149 + ++D Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 150 EEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 209 + PLE+ P EF LL FM++P RV++R QL++ +WG + + ++R VD HI RLRK +EP Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 210 GH-DRMVQTVRGTGYRFST 227 V+TV G GYRF Sbjct: 243 PSAPTFVKTVVGVGYRFED 261 >UniRef50_B6BUZ2 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BUZ2_9PROT Length = 233 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 1/230 (0%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M + IL+VEDE I EM+ L N FQP+ A + + A + L + DLILLDWMLPG Sbjct: 1 MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI F+K ++ S T +IPV+MLTA+ EE +++ G + GADDY+ KPFS KEL+ARIKA+ Sbjct: 61 DGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAI 120 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR P + I+ L + P SH V + +++GPTEFKLL+ + RV SRE + Sbjct: 121 LRRKKPDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREII 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 ++ +W ++ RT+DVH++RLR L+ G + ++T+RG GY+ S Sbjct: 181 VDKIWNNESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKLSDEI 230 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 8/224 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE IR ++ L + G++ EAED + + E DL++LD MLP G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ +K+ + PV+MLTAR + ED V G E GADDYITKPF+ K L+AR+K+++R+ Sbjct: 67 SILREIKK---YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + M VE +IE+ L ++ TSH V + +E+ P E+ LL + + + + SRE+LLN Sbjct: 124 TNNM-VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 VWG + +DRT+D HI+ LRK + ++T+RG GY+ Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKLD 222 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW-PDLILLDWMLPGG 59 M ++LV+EDE +R+++ LE NG+Q + AE+ ++ NE +ILLD MLP Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG +K ++ T +PV+M+TARGEE D++ G E GADDY+ KPFSP+E+VAR+KA+ Sbjct: 61 SGWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAI 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + R + E QG+ +D S V + +E+ P EF LL + + +V SRE+ Sbjct: 118 LSRTYGSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKC 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 LN VWG + Y + RTVD HI++LR+ L +++TV G GY+ Sbjct: 178 LNEVWGYDFYGDLRTVDTHIKQLREKLGE--KRNLIKTVWGIGYKLE 222 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D SA+ + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR + Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 125 PMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 V+E + +D H V EP+ + EF LL + M + RV +R QL+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VWG + + +T+DVH++RLR +E + + TVRG GY+ Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILVV+D+ + EM+ VL +GF+PV D A+ PDL+LLD MLPG Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + ++ ES D+P+VMLTA+ + D VRGLE+GADDY+ KPF P ELVAR++A + Sbjct: 90 GIEVCRQIRGES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 146 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R E + + +++D H V G E + + P EF LL P +V++RE LL Sbjct: 147 -RPGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLL 205 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYR 224 VWG + R V+VH++RLR +E +V TVRG GY+ Sbjct: 206 EQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +R+L++EDE I +++ L+ ++ + + A++ + D ++LD MLP SG Sbjct: 5 KKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K ++ +S +P++MLTA+ EE DR+ GL+ GADDY+TKPFSPKELVAR++A+MR Sbjct: 65 EEICKRIRLQS---QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMR 121 Query: 122 RISPMAVEE---VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R + ++ + L +D +E +E+ TEFKLL F+ + +V+SR++ Sbjct: 122 RTNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ V G + DRT+DVHI+ LR +E + + + TV G GYRF Sbjct: 182 LVVKVLGYDYVGYDRTIDVHIKNLRHKIE-CEYYKYIVTVYGVGYRF 227 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + R+LVVEDE I + LE+ GF D A+ + D +LD MLPG Sbjct: 44 LGMRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPD 103 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI ++ L+ ++ +P+++L+AR E D++ GL +GADDY+ KPFS ELVAR++A++ Sbjct: 104 GISVLRSLRERGIS--LPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALI 161 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + V ++ L+L+ + V G++ +E+ EF +L M P RV++R Q+ Sbjct: 162 RRTAGIGLS-VYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVC 220 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + VDV+I++LRK ++ G +++QTVRG GY+ Sbjct: 221 ERVWNYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+ IRE++ + L G+ + DY + L DLI+LD MLPG SG++ Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +K ++ T++IPV+MLTA+ E D++ GL++GADDY+ KPFS EL+AR++A++RR S Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + I + + LD V E +E+ EF+LL++ +++ +V +RE ++ +W Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 G + E RTVDVHI LR+ L+ +++T+R GY+ Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASS--IIKTIRNLGYK 235 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 134/238 (56%), Gaps = 15/238 (6%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +L+VEDE IR M+ LEQ F VEAE+ A+ L + DL++LD M+PG G Sbjct: 4 AATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ S ++P++ LTARGEE DRV G E GADDY+ KPFSP+ELV R+KA++R Sbjct: 64 WTTCRKIREFS---EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 122 RISPMAV----------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 R S E+ + LSL P + + E L + P E+ LL + + Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAG 180 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH--DRMVQTVRGTGYRFST 227 RV SR+ LL+ VWG + RTVD H+RRLR+ L V TVRG+GY+F Sbjct: 181 RVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEV 238 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 4/230 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+ILV+EDEA I ++ Q F+ + ++ PDLI+LD MLPG Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + LK++ +T IPVV+LTA+ +E DR+ GLE GADDYI KPF+PKEL+ARIKA++ Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR P E G+ LD H AG+ L++ EF LL + + RV R+ Sbjct: 121 RRTEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQM 180 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 LL+ VWG + DRTVDVHIRRLRK L + VQTV+ GY+F R Sbjct: 181 LLDLVWGADYEGTDRTVDVHIRRLRKKLGD--YQDRVQTVKQIGYKFMDR 228 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +ILV+ED+ I ++ L+ GF A D +N D+ILLD MLP S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K ++ T +P++MLTA+ E D+V G + GADDY+TKPFS +EL+ARIKA++ Sbjct: 61 GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117 Query: 121 RRISPMAVEE-VIEMQGLSLDPTSHRVMAG--EEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR V + + E + L+++ +++ V + +++ EF+LL F + + V SR+ Sbjct: 118 RRTKKSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++L VWG + D +D++I+ LR ++ + +QTVRG G+ F Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 136/230 (59%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+ +D + E + L+ + + A D A+ + N PDL++LD M+P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+GEE DR+ GLE GADDYI KPFSP+E+V RIK + RR Sbjct: 65 EVCKEIRKIS---NVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 Query: 123 ISPMAVE-----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++ +++ ++D + + +E +++ P E ++L+ T+ RV SRE Sbjct: 122 VGNANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 ++L+ VWG + + + R VD I+R+RK + G ++TV G GY+F Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL++ED+ IR + L +G + +EA + + D++L+D MLP G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + L+R S D+P++M+TAR + D V GLE GADDY+TKPF KEL ARI+A++RR Sbjct: 79 ECCRRLRRSS---DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR 135 Query: 123 ISPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 EVI++Q L + P + V E L + TEF+LL + P+RVYSREQLL Sbjct: 136 SRSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLL 195 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG + + + R VDVH+RRLR +E H R++ TVRG GY+ Sbjct: 196 ERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RI +VEDE I + LE GF+ E+ A ++ + DL+LLD MLPG G+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++ S +P++MLTA+ E ED+V GL+ GADDY+TKPF+ +EL+ARI+ +R+ Sbjct: 66 ICKRVREVS---SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKH 122 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 P EE ++++ L + P + V E + + E+ LL + M + V +R+Q+ Sbjct: 123 VPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQI 182 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 L VWG + + VDV+IR LR L+ H++ + TVRG GY Sbjct: 183 LEKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 137/227 (60%), Gaps = 1/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M++ I V+ED+A I +V L+ G+ + ++ P L +LD M+PGG Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + L+ + IP++ +TAR E DRV GLE GADDYITKPF+P+EL+AR+KAV+ Sbjct: 61 GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + +I + + +D ++ ++ E TEF+LL + HP RV+SR+ LL Sbjct: 121 RRFERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VWG +V R+VDV++RR+R+ +E + R ++TVRG GYRF Sbjct: 181 DAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 6/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+LV++D+ I M+ L G++ A D +N E P+L++LD MLPG Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++ T P+++L+AR E E +V+GL GADDY+ KPF+ +EL+AR++A++ Sbjct: 61 GWEICQRFRKDNFT---PILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + +VI+ L +D + V L + EF LL FM HP +V +REQ++ Sbjct: 118 RR--RITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQII 175 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + VWG + ++V+I LR+ +E G R++ TVRG GY + Sbjct: 176 DRVWGLDFTGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVLKEQ 222 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE +RE++ L +EA D +A+ + + PDL+LLD M+P G Q Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ ++ ES +PV+MLTARG DRV+GL GADDYI KPF +EL AR++AV+RR + Sbjct: 68 LQRIREESA---VPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSA 124 Query: 125 PMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V I L++ P + PL + P EF LL HP +V+SRE+LL+ + Sbjct: 125 GQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRI 184 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG + + RTVD HI+ LR L G ++ TV G GYRF+ Sbjct: 185 WGPDFQGDARTVDAHIKNLRDKLGEGA--GLILTVWGVGYRFA 225 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 13/236 (5%) Query: 1 MAR--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R ++L+V+DE I +V VL++ ++ + A++ + A+ + PDL++LD MLP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G + + ++ T +P++ML+A+GE D+ G GADDY+ KPFSP EL R+KA Sbjct: 61 IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117 Query: 119 VMRRI-------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 ++RR S + I L ++ SH V +P+ + P EF+LL F HP+ Sbjct: 118 LLRRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPD 177 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +V++REQL H+W + T+ V IR+LR+ +E + +QTV G GY+FS Sbjct: 178 QVFTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 8/230 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED+ I +++ L + G++ V A D + + + P L+L+D MLP Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++S ++P+++++AR + D++ L GADDYITKPFSP ELVAR+K+ + Sbjct: 72 GFEVCRQVRQQS---EVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 121 RRISP----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR E+V+ GL+++ V +PL + EF+LL P +V+S+ Sbjct: 129 RRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 EQL N VW + + RTV VHI+ +R+ L G H R + TV G GY+F Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 141/229 (61%), Gaps = 5/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE +R ++ L + G+ VEA + A+ ++ LI+LD M+P Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + +++E++ +P++MLTAR E D+V+GL+ GADDY+TKPF P+EL+AR+ A++ Sbjct: 61 GWEVCEEIRKENLA--LPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + + + L +D H+V + P+ + P EF+LL + +P++V++R+Q Sbjct: 119 RRAVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 LL +WG + ++RTVD HI+ +R L+ G +++TV G GY+ Sbjct: 179 LLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLK 227 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+A I +++ L ++ V + D + L + D ++LD MLPG G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + + +MTR P+++ +AR E R+ GLE GADDY+ KPFS ELVAR+KA++RR Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 123 ISPMAVEEVIEMQ-----GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + +A + I+ GL++DP + L++ P EF LL+FF HP +V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 LLN VWG + TV+ HI RLR +E + TV G GY+ + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 97/230 (42%), Positives = 136/230 (59%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE + ++V E+ GF E + A+ +L DL++LD LPG G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ ++ E + PV+MLTAR +E DRV GLE GADDY+ KPFSP+ELVAR++A++RR Sbjct: 62 GVLRQMRAEGFEQ--PVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119 Query: 123 ISPMAV------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + + + GL LD R + L + P EF LL + +HP +V++R Sbjct: 120 TAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 E LL VWG + YV+ RTVDVHIRRLR L E ++QT G GYRF Sbjct: 180 EVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 305 bits (783), Expect = 6e-82, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA++IL++ED+ I ++ L+ GF+ D + ++ PD ILLD MLPG Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + +K++ PVV++TA+GEE DRV GLE GADDYI KPF PKE+VAR+KAV+ Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 121 RRISPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR E + + +++D H P + EF LL M RV RE L Sbjct: 121 RRRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 LN VWG + DRTVDVHIRRLRK + V+TV+ GYRF Sbjct: 181 LNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA--WVETVKQIGYRF 224 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 146/230 (63%), Gaps = 7/230 (3%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 MA+ +IL+V+DE I E++ LE++G+Q AE + A+ + PDL++LD MLPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G++ + ++ + + P++ML+A+GEE D + GLE GADDYITKPFSPK L+ARI++V Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 120 MRR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 +RR +P I + G+++ P H V + +++ P+EF +L F + P V++ Sbjct: 121 LRRQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 R Q+++ + G + V DR+VDV I LRK LE G ++TVRG GYRF Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYGE--YIETVRGVGYRF 228 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+A IREM+ + L+ GF + + E PDLILLD MLPG G+ Sbjct: 2 IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+R+ T IPV+M TA+G E D+V+GL+ GADDY+ KPF E+++RIKAV+RR Sbjct: 62 LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + + I + L +DPT++ V G E + + EF+LL F +P RV++R++LL+ VW Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 G E RTVDVHI LR L G+ ++ TVRG GYR R Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEER 223 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+++D+ I M+ L G++ A +N + E PDLI+LD M+P Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K L+++ IP++M+T DRV GLETGADDY+ KPF+ +ELVAR+KA++ Sbjct: 61 GLEVCKRLRKD---AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117 Query: 121 RRI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR+ +E + L +D ++ + G +E TEF LL FFM HP++V +RE L Sbjct: 118 RRLDHKKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 ++ VWG + E ++V++ LR LE R++ TVRG GY Sbjct: 178 MDRVWGFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxalobacter formigenes RepID=C3X860_OXAFO Length = 233 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 108/224 (48%), Positives = 151/224 (67%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE I E++ F ++ G++PV + A L PD++LLDWMLP SG++ Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ + +PV+MLTA+ EED+V GL+ GADDYITKPFSPKELVARI A++RR Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 P + ++ ++LDP S +V +EMG +EFKLL F M +P+RV+SR QLL+ VW Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + +E+RTVDVH+ RLRKAL+ G + +V+TVRG GY S + Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK--GQENLVRTVRGMGYMLSEK 229 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 7/226 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D +A+ + + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 125 PMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 E V+E + +D H V + + + EF LL + M + RV +R QL++ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + + +T+DVH++RLR +E + + TVRG GY+ Sbjct: 181 RVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 135/230 (58%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + IL+ +D I +++ ++ PV A D + A+ + P ++LLD M+P G Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ +S D+PV+++TARGE+ +++ GL+ GADDYI KPFSP E++ARI+A++RR Sbjct: 62 EVCRKIRAKS---DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR 118 Query: 123 ISP----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++ E V+ + L ++ + + G + + E + + ++P +V++R+ Sbjct: 119 MTKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDN 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 LL+ +WG + + + RTVD HI+RLR L+ H ++T+ G GY+F Sbjct: 179 LLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEV 228 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 135/234 (57%), Gaps = 12/234 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+V+DEA IR+++ L G+ V A D + A+N ++ PD+++LD M+P G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++++S D+P++MLTA G+ DR+ GLE GADDY+ KPFSPKEL ARI+AV+R Sbjct: 74 YGVCQEIRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLR 130 Query: 122 RISPMA------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + A +I L++D ++ E + + EF LL ++ + +S Sbjct: 131 RTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 176 REQLLNHVWGT--NVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 R +L VWG +V+ R VDVHI RLR LE + ++ T RGTGY F Sbjct: 191 RADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +IL+VED+ I +++ ++ + D SA+ + DLILLD +P + Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L++ T++ P++M+TA+ EE D+V GLE GADDYITKPFS +EL AR KAVM Sbjct: 66 GVEVCRELRK---TKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVM 122 Query: 121 RRISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + ++ L ++ RV + +++ P EF LL +P R Y Sbjct: 123 RRSDAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSY 182 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 SR +LL+ +WG N + TV+ HI RLR +EP G+ + T G GYRF+ Sbjct: 183 SRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFN 235 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V L+ F + D + A N + + DL LLD M+P S Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K ++ P++MLTA+G E D+++GL GADDYITKPF P E+VAR+KA + Sbjct: 129 GLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 RRISP-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR + EE++E +GL L+ +H E L + PTEF +L V S Sbjct: 186 RRYKRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVS 245 Query: 176 REQLLNHVWGTNVYVED-RTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 E+L + +W Y + T+ VHIR LR+ +E + + ++TV G GY+ Sbjct: 246 AEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 3/229 (1%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M++ +ILVV+DEA IR+++ L G+ V A + AV+ + PDLI++D MLP Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG K L+ PV+ L+AR ED++ GL G DDY+TKPFS E++AR+ A+ Sbjct: 85 SGFAATKRLREAGFR--CPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 142 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V+ I + L +D S+ V +++ PTEFKLL +FM +P RV S+ Q+ Sbjct: 143 LRRTKIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQI 202 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 L HVW + + V+ +I +R+ L + ++ T RG GY TR Sbjct: 203 LGHVWDYDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ++LV+EDE + ++ + L Q G+ + + + + DLI+LD MLPG + Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L++ + P+++LTAR EE+ V+GL+ GADDYITKPF EL+AR+ AV+ Sbjct: 61 GFEILTRLRQNGV--KTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118 Query: 121 RRISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR E+VI + LS+ P + V+ E + + P EF++L + + P V Sbjct: 119 RRTQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVI 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +R+ L+N VWG + RTVDVH+ LRK LE G ++++RG GY+ Sbjct: 179 TRDDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL-GQSVQIESIRGVGYKL 228 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 144/227 (63%), Gaps = 5/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +IL+V+DE I E+V F L++ G+ + A + A++ PDL++LD MLPG G Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ ++T +IP+VMLTA+GEE D V GLE GA+DYI+KPFSP+ELVARI+ ++R Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122 Query: 122 ---RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R+ A + + LS+D HRV+ + L++ +EF++L F +T V++R Q Sbjct: 123 RRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQ 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +++ V G N V +R+VDV I LRK L P ++TVRG GYRF Sbjct: 183 IVDAVHGENYAVTERSVDVTIAGLRKKLGP--CADFIETVRGVGYRF 227 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A RILVV+DE I +V + L + G++ A A+ P LI+LD MLPG SG Sbjct: 8 ADRILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ L+ + TR++ V+MLTAR EE DR+RGL GADDY+TKPFSP ELV R+ A++R Sbjct: 68 FDVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILR 127 Query: 122 RISPMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + + + L +D + V + +E+ PTEFKLL RV R L Sbjct: 128 RTGSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHL 187 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L VW ++ RTVD+H++RLR L G +++TVRG GYR Sbjct: 188 LETVWEAAPDIQTRTVDMHVQRLRSKLGAAGE--LIETVRGFGYRLRA 233 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 14/233 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN---EPWPDLILLDWMLPGGSG 61 I+VVEDE + +V L + G + D +A+ +L +P PDLI+LD MLP G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + +++ +T P++MLTAR E DRV GLE GADDY+TKPFS +EL AR+ A++R Sbjct: 64 LEICRRVRQSKIT---PILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 122 R-------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 R I+ L++DP S V + +P+ + EF LLH +P RV+ Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 SR+ LL+ VWG + DRTVD HI RLRK L PG + T+ G GY++ Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 141/237 (59%), Gaps = 10/237 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL--NEPWPDLILLDWMLPG 58 M+++IL++ED+ + E++ L N ++ A ++ L E DLI+LD MLP Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 GSGIQFIKHLK--RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 G+Q + ++ + S T +P+VMLTA+G+ DRV GLE GADDYI+KPF P+EL+ARI Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 117 KAVMRRISPM----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +AV+RR + + + LS+ P SH V ++P+ + +F+LLH+F TH + Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 173 VYSREQLLNHVWGTNVYVE-DRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 V +REQL + + DR +DVHI RLR +E + + TVRG GY+F+T Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M + IL+VEDE I ++ LE G+ + ++ E L+LLD MLPG Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG++ ++ L++ PV++LTAR D+V GL+ GA+DY+TKPF +EL+ARI+A Sbjct: 61 SGLEVLRRLRK--TDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAA 118 Query: 120 MRRISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 +R+ + + L ++ + V G++ +E+ P EF LL + + HP++V +RE Sbjct: 119 LRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTRE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 Q+L+ VWG + + VDV+IR +RK L+ +++ T+RG GY Sbjct: 179 QILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGY 224 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RR+LVVED+ + E+ L GF A D A++ PDLI+LD MLPG G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ D+P+++LTA G ++R+ GLE GADDYI+KPFSP+ELV R+++++RR Sbjct: 100 EVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156 Query: 123 I-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + E + +LD ++H ++ E L + EF LL F + HP + +SREQLL Sbjct: 157 SIGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLK 216 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + TV V +RRLR+ +E H ++ TV G GYR + Sbjct: 217 SVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +R+LV+EDE + ++ + L G++ + + DLILLD MLPG + Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L+ E + PV++LTA+ EE+ V+GL++GADDYITKPF EL+AR+ AV+ Sbjct: 61 GFEIMSKLRSEGV--KTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVL 118 Query: 121 RRISPMAVEEV--------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 RR + E I + L++ P + V EP+ + P EF++L + P Sbjct: 119 RRSTGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGV 178 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 V +R+ L+N VWG + RTVDVH+ LRK LE + ++RG GY+ Sbjct: 179 VMTRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 6/229 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 R ILVVED+ I + L G++ ++A+D + + + + PDL++LD MLP +G Sbjct: 5 TRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +K L++ RD PVV+L+A+G E D++ GL GADDY+ KPF +EL+ARIKAV+R Sbjct: 65 FEVLKELRQRG--RDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLR 122 Query: 122 RISPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R P A + +S+D + V P+E+ EFKLL F+ HP R ++RE+ Sbjct: 123 RRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREE 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 LL+ WG + RTVD +R+LR EP R TVRG GYRF Sbjct: 183 LLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +IL+VEDE + +M+ L F+ A A L DL+LLD MLP G G Sbjct: 20 AVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDG 79 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + + +PV++LTAR E D V GLE+GADDY+TKPFS EL AR KA++R Sbjct: 80 LLLCQQLRNDG--QQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLR 137 Query: 122 RI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R S ++IE +GL +D S V+A + PL + EF LL F HP++V+SR QLL Sbjct: 138 RHLSAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLL 197 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 + VWG + TV+ HI RLR L G +VQTV G GY+F+ Sbjct: 198 DAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED + E + LE GF A D + ++ D I+LD +LPG SGI+ Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ E +P++MLTA G E+RV GL GADDY+ KPF +ELVAR++A++RR Sbjct: 62 ICRFLRDEEK-SQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR- 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + + +E ++ L ++ + V EPL + EF LL FM +P V+SREQ+L+ + Sbjct: 120 NQVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 W + VDV++ LRK L+P G+D ++TV GYR Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + ILV+EDEA + V L G++ A D + + + PDL+LLDWMLPG SG Sbjct: 8 SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ S +PVV++TAR E DR GL+ GADDY+ KPFS +EL++RI+ + Sbjct: 68 LEICRRLR--STGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYL- 124 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + + L LDP + V GE +E+ E+ LL + M HP +V +R+Q+L Sbjct: 125 RQPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILE 184 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 HVWG + + ++V+IR LR +E G R++QTVRG GY Sbjct: 185 HVWGCDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 139/224 (62%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 + VVED+ + E++ F LE GF+ + + + + P++I+LD MLPG G++ Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L++ + +DIP++ LTA+ EEED++ G GADDYITKPFS KEL+ARI+AV+ R Sbjct: 66 AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRYK 125 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++++ L LD V +P+ + TEF++L + + + +++ +R++++N +W Sbjct: 126 KTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINMLW 185 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + DRTVDVHI+ LR L G + ++T+RG GY+FS + Sbjct: 186 SYGTDINDRTVDVHIKHLRDKLGDFG--KYIRTIRGVGYKFSLK 227 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 10/232 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I++VED I E V L++ F V A AV L + P LI+LD +L G+G Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 65 IKHLK------RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 + ++ + D+P+++L+AR +EEDR+ G GADDY+TKPFSP EL RIK+ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++RR +++ IE+ L +DP V P+E+ P EF+LLH +HP RV+SRE+ Sbjct: 131 ILRRSIGLSIA-CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREE 189 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALE---PGGHDRMVQTVRGTGYRFST 227 LL VWG + RTVDVH+ RLR LE G + M+ T G GY+ + Sbjct: 190 LLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLES 241 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+LVV+D+ +R++V L++ G+ A D ++A+ E PDL++LD MLPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ ++PVVMLTA GEE DRV GLE GADDY+ KPFSP+ELV R+ +++R Sbjct: 68 LEVCRRLRERG---EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILR 124 Query: 122 --RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R S A EV+ L LD + R L + EF LL F + HP R +SR +L Sbjct: 125 RARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L VWG + + TV VH+RRLR+ +EP + TV G GYR+ Sbjct: 185 LEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + R+LVVEDEA ++ L + G+ D AV Q E D I+LD MLPG G Sbjct: 29 SMRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDG 88 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ PV+MLTARG+ +DR+RGL+ GADDY+ KPFS EL AR++A++R Sbjct: 89 FEVCRRLREAGRWA--PVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVR 146 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + V+ + L LDP HRV+ PL++ EF LLH M HP+ V +R +++ Sbjct: 147 R-GAVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVD 205 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW VD ++R +R+ ++ +++TVRG GYR T Sbjct: 206 HVWDFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRT 251 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%) Query: 1 MAR---RILVVEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLDWML 56 M+R ++L+++DE I E++ VL + G V A + Q ++ PDL++LD ML Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92 Query: 57 PGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 P G G K ++ S +P++ L+A+GEE D++ GL G DDYITKPFSPKE+ R+ Sbjct: 93 PDGEGYDICKQIRDIS---HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRV 149 Query: 117 KAVMRRI---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 KA +RR+ P +I+ L+ + E +E+ P E L+ +F+ HP RV Sbjct: 150 KAQLRRVSYLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRV 209 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 S+E L VWG + + D TV VHIRRLR+ +E + TV+G GY+F + Sbjct: 210 ISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVVK 265 >UniRef50_A9KGK4 Phosphate regulon transcriptional regulatory protein n=6 Tax=Coxiella burnetii RepID=A9KGK4_COXBN Length = 248 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 166/226 (73%), Gaps = 1/226 (0%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L++EDE IR+MV F L F+ ++AED A+ QL PDLILLDWMLPG SG Sbjct: 18 KIKLLIIEDEIAIRDMVRFSLPDE-FELLDAEDTAKAIKQLAAQIPDLILLDWMLPGKSG 76 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+FI+ +K++ + +DIP+V+LTA+ EEE++VRGL +GADDYITKPFSP EL+ARI+A++R Sbjct: 77 IEFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDELIARIRAILR 136 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R ++ + I++ + ++ H V +E + + PTE+K+LHFFM HP + YSR+QL+ Sbjct: 137 RGPLISSNQEIKIGDIKINTAKHLVTVKDEHIALSPTEYKMLHFFMKHPNKTYSRDQLIT 196 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 ++WG N+Y++DRTVDV +RRLR L+ H +++T+RG GY+ ST Sbjct: 197 YIWGGNIYIDDRTVDVQVRRLRDKLKKYDHHHLIKTIRGAGYQLST 242 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 10/233 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + +IL+++DE + +++ L ++GFQ + A + +A+ N PDLI+LD +LP +G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ ++L++ + + P++ L+ + + D++ GL G DDYITKPFSP ELVARI A +R Sbjct: 63 LELCQNLRKITES---PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 122 RISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + + ++ + GL++D ++ + ++P+ + EF++L HP V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 QL +H+WG + + RTV VHI LRK +E + +++ T++G GY+ T Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDT 232 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 134/228 (58%), Gaps = 7/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+ +D+ I ++V LEQ G++ + A+D + AV PD++++D M+P G++ Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +K M D+P+++L+A+ + D++ G + G DDY TKPFSP EL R+KAV+RR Sbjct: 65 ASQKIK---MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRS 121 Query: 124 SPMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + + +V++ Q ++ ++ V + + + EF +L +HP +++SR QLL Sbjct: 122 KAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLL 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFST 227 +W ++ ++ TV VHIRRLR+ +E +++TV G GY+F Sbjct: 182 EQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGF-QPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 RIL+V+DE + ++ LE+ GF + A + P L +LD MLP G Sbjct: 3 QPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGE 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q + ++ +S +IP++ L+A+ EE D++ GL G DDYITKPFSPKE+ R+KA + Sbjct: 63 GYQLCQQMRAQS---NIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQL 119 Query: 121 RRISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+S M E + ++ V E LE+ E LL F+ +P R+ S+E Sbjct: 120 RRVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKET 179 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L VWG + + D TV VHIRRLR+ +EP ++TV+G GYR + Sbjct: 180 LFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 134/235 (57%), Gaps = 12/235 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R +VVEDE + +V LE+ G++ A D AV+ E PD+++LD LPG G Sbjct: 63 ALRAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDG 122 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + L+ S D VVMLTAR +E D + GL GADDY+TKPFSP+EL+AR++A++R Sbjct: 123 IEVCRRLRTFS---DCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILR 179 Query: 122 RISPMAVEE--------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 R P + ++ LS+D + V +E + + TEF LL P V Sbjct: 180 RPRPKTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLV 239 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 +SR QL++ VWG + ++ VDVHI LR+ L+ + ++TVRG GYR T Sbjct: 240 FSRRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGT 294 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+D+ IRE+V LE+ GFQ EA D A+ ++NE D+++LD M+P G Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 L++ DIP++MLTA+GE +V+G G DDY+ KPF P ELV R+KA+++R Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + V + I++ + L+ + V GE+ + + EF+LL + R SREQL+ VW Sbjct: 151 -ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVW 209 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 G + +RT+DVHI RLR+ + ++T+RG GYR Sbjct: 210 GYDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 139/227 (61%), Gaps = 7/227 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +L+VEDE +++++ + + G A+D A+ L DL++LD M+P Sbjct: 20 MAN-VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLD 78 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K + S ++P++MLTA+G E+D+++G E GADDY+TKPFSPK L+A+ A++ Sbjct: 79 GFSVCKLAREMS---NMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALL 135 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR SP + + + + + + P+SH+V + + + E++LL+F M +P ++++R+QLL Sbjct: 136 RRSSPAPL-DALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLL 194 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N +WG + RTVD HI+ LR+ L G + + T+ +GY+F Sbjct: 195 NRIWGYDFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+V+DE I +++ L+ GF + A+ + D+ +LD MLP Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ + P++MLTA+ E+ D++ GL GADDYITKPF+P E+VAR+K + Sbjct: 61 GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 RRI----SPMAVEEVI----EMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 RR + + +I +++GL ++ +H+ + + + P EF +L + H + Sbjct: 118 RRYMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGY 223 V E+L VWG + TV HI RLR+ + EP + + ++TV G GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RILV EDE IR + L++ GF EA + AV + D++LLD M+P G Sbjct: 2 NRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ + ++ ++MLTAR EED++ GL GADDYI KPFSP ELVARI+A++RR Sbjct: 62 EACAAIRD--LDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119 Query: 123 ISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + + ++ ++ ++D + +V + +++ PTE+ L+ + + E V SR+ LL Sbjct: 120 VEKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + VWG N + + +TVDV+IRRLR+ +E H ++T+ G GY++ Sbjct: 180 DAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RIL+VEDE + + +L+++ + A D ++ + DL +LD MLP SG+ Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ +++ + PV++LTA+ EDRV GL+ GADDY+ KPF KEL+AR++A+ RR Sbjct: 62 ILRAMRKAGL--QTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRT 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +A + IE LD + V EPL + EF+LL FM +P +V S+E +L+ V Sbjct: 120 GQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRV 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 WG + V V+ ++ LRK ++ + TVRG GY F Sbjct: 180 WGPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILV EDE IR + L++ G++ +EAE+ A++ + D++LLD M+P G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + + S + ++MLTAR EED+V GL GADDYI KPFSP EL+ARI++++RR+ Sbjct: 63 VCEQAR--SKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 124 ---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + +D + RV +E+ PTE+ LL F+ + ++V SR++LL Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + VWG N + + +TVDV+IRRLR+ +E + ++T+ G GY++ Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRN 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE I ++ + LEQ F+ + A D A+ + D I+LD MLP GI Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++ + P+++LTA+ E D++ GLE GADDY+TKPFSP+E++ARI+A+ RR Sbjct: 62 AVTKKIREAKL--KTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR 119 Query: 123 ISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + E I + LS+D T G+ L + P EF+LL +FM +V SR Sbjct: 120 TTQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 E+LLN VWG + E R VD+ + LR+ +E H ++TVRG GY+ Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLED 231 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL++ED+A + ++ + LE+ GF A+ + PDLILLD MLP G+ Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++++ IPV+ LTAR E DR+ GLE GA+DY+ KPF +EL+ARIK R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR- 125 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + ++E G+ LD TS +V PL + TEF+LL F M P V+SREQLLN Sbjct: 126 -NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNA 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 VWG + + DR VDV++ RLR+ +E ++ +VRG GY F R Sbjct: 185 VWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPR 231 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+ I M+ L + G+ +A AV + ++++D M+P GI+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 ++ ++ +S +P+++L+A+GE+ D++ GL GADDYI KPFS EL+AR+K +RR Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 Query: 123 -----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++ E + D ++ V G + L + E K+L F +P RV+++ Sbjct: 122 IYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKV 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 Q+ + VWG + TV VH+RRLR +E + ++++TV G GY+ + Sbjct: 182 QIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLT 231 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+LVV+DE I ++V L +GF V A A+ + PDL++LD MLP G Sbjct: 20 APRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADG 79 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + ++ VV LTAR D++ GL G DDYITKPF+ +EL+AR++AV+R Sbjct: 80 FEVCRRLRADG--AEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLR 137 Query: 122 RISPMAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 R A E ++ + LDP +H V ++P+E+ PTEF LL +F+ +P RV SR Sbjct: 138 RTRRPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSR 197 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 Q+L VW + E VD ++ LR+ L G ++ T RG GY Sbjct: 198 AQILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP-LIHTQRGFGYAL 245 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+ I ++ L + G+ + D +AV +L L++LD MLP G + Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ + + PV++L+A+ EE D++ GL GADDY+ KPF EL AR+KA +RR Sbjct: 66 VLQKIREKG---NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRY 122 Query: 124 -----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++I + ++ ++ V G+ + + EF++L F+ +P +V+++ Q Sbjct: 123 LNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQ 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 L +WG N ++ TV VHIRRLR+ +E + +QT+ G GY+ Sbjct: 183 LFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+V+DE I ++V L+ + + A+ +++ DL +LD MLPG S Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ + P++MLT + E D++ GL GADDYITKPF P EL+AR+KA + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 RRISPMAV-----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR + E VI GL ++ +H E+ L + PTEF +L + V S Sbjct: 118 RRYKKFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVS 177 Query: 176 REQLLNHVWGTNVYVED-RTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 E L + +WG + + T+ VHIR LR+ + + + ++TV G GY+ Sbjct: 178 SELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ L NGF+ A D S + + DLILLD MLPG G Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+R +++PV+M+TAR EE D +RGL GADDYI KPF+P ELVAR+++ + R Sbjct: 62 AVCRELRR---YKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118 Query: 123 ISP-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + V++ L + ++RV ++ + EF+LL F HP V+SRE Sbjct: 119 YERILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSRE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 L VWG + TV VHI R+R+ +E H R ++T+RG GYRF Sbjct: 179 ALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 131/234 (55%), Gaps = 12/234 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +ILVV+DEA IR ++ L G++ + A + + A+ + +P L++LD M+P G Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + L++ES D+P++MLTA GE DR+ GLE GADDY+ KPFSPKEL ARI++V+R Sbjct: 65 YGVCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLR 121 Query: 122 RISPMAV------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + +I + L +D +V E + + EF LL ++ +S Sbjct: 122 RADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 176 REQLLNHVWGT--NVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 R +L VWG +V+ R VDVHI RLR LE + ++ T RGTGY F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 9/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V + L++ G+ A D A++++ P +++LD MLP + Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K L ++I ++MLTA+ + D++ GLE GADDY+TKPF +EL+ARIK+++ Sbjct: 61 GYDVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116 Query: 121 RRISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR+ EE VI + L+++ V LE P EF LL+ +++ VYSR Sbjct: 117 RRLDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSR 176 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 EQ+LN +W + RTVD HI+R+RK L + ++QTV G GY+ Sbjct: 177 EQILNIIWNMDYAGGTRTVDTHIQRIRKKLG-NNYQDLIQTVYGIGYK 223 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 21/240 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGG 59 M IL+V+D I E++ +LE GF AE + A++ L++ P+LILLD M+P Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG + ++RE D+P++ L+A+G+ D+V G E GADDYITKPF +EL+ARI+A Sbjct: 61 SGYELCSQIRRE---WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117 Query: 120 MRRISPMAVE--------------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHF 165 +RR + V++ + L + ++ V + +E+ EF+LL F Sbjct: 118 LRRYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTF 177 Query: 166 FMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V++REQ+ + VWG TV VHI+ LR+ LE + ++T GTGY F Sbjct: 178 LAENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVF 234 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 1 MARR--ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R+ +LV+EDE I + L G+ A D + +++ E PDL++LD MLP Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G++ + +++ T + P+++LTA+ +D+V GL++GADDY+ KPFS +EL+AR++A Sbjct: 61 LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +RR++P EV + L ++ + G +E+ EF+LL +P +V+SR + Sbjct: 118 HLRRVNPAVTGEV-RVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFE 176 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + VW VDV+I LR+ LE GG R++ TVRG GY Sbjct: 177 IEEKVW-PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE + E+V LE+ G+ A D + A+ DLI+LD MLPG G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ T +IP+V L+A+ EEED++ GL G DDY+TKP SP+ LVA +KAV+RR S Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRR-S 129 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + ++E+ GL + +R E L + TEF+LL + + HP + ++R+QLL +W Sbjct: 130 GVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIW 189 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V +RTVD HI+ LR+ L + +QTVRG GYRF Sbjct: 190 KDAMMVTERTVDAHIKNLREKLGDFA--KHIQTVRGVGYRF 228 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 138/228 (60%), Gaps = 7/228 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVV+DE + E+V F LE+ G++ + A+D + A+ PDLI+LD ++PG G Sbjct: 4 ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+R+ TR IP++ML+AR +E D+V GLE GADDYITKPFSP+ELVAR+ A +RR Sbjct: 64 CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123 Query: 125 ------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 P + +I L +D + G + + EF+LL+F P + +SR Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 LL W +V + RTVDVHIRR+R+ LE + + ++T RG GYRF Sbjct: 184 LLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 299 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+V+DE I + V + L + G+Q AE+ D A+ DL +LD M+PG +G + Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++L+ + + PV+ L+AR E D+V GLE GADDY+ KPF +EL+AR++A++RR Sbjct: 67 LCRNLRTRT---NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRG 123 Query: 124 SPMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 A E I G++LD H +++ P EF+LL M +V SRE LL Sbjct: 124 QMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 WG E +TVD HI+RLR L G +++TVRG GYRF Sbjct: 184 REAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 299 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DE I +++ LE++GF + A D SA++ + LI+LD MLP +G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S +P++MLTA+ EE++++ G+ GADDY+TKPFS +ELV R++A++RR Sbjct: 66 VCNRIRAVS---SVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRA 122 Query: 124 SP--MAVEEVIEM--QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + +++ L +D V + + EFK+L F+++P +V+SRE+L Sbjct: 123 YRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKL 182 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 + +G N DRTVD +I+ +R+ +E + TV G GY+F Sbjct: 183 VEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L+V+DE I ++ LE G+ + A D +A+ L D +LLD M+PG SG Sbjct: 6 TVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYD 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ RD+PV+ LTAR E+ D++RGL GADD+I K +P E+VARIKAV+RR Sbjct: 66 VLRRIREN---RDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRY 122 Query: 124 SP--MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 A V++ L +D +H V +P+++ EF+LL F HP +V++REQL Sbjct: 123 RRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQ 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +WG + + TV VHI RLR+ +E + R + TV G GYRF Sbjct: 183 RLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFD 226 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ I +++D+ IR+++ +E+ G+ ++ + + N+ PD+++LD M+PG Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K +++ S D+P+++++AR E+ D++ GLE G+DDYI KPFSP+EL+AR+K+V Sbjct: 61 GYELCKEIRKIS---DVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVF 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR+ I ++ + + P +V+ E + EF+L+ F + + ++REQLL Sbjct: 118 RRVKMPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + + E R VD ++R+RK L+ G + + T+ G GY+ + Sbjct: 178 EKVWKYDSFTETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVES 224 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I ++ L + F A+ L E PD ++LD LP GI+ Sbjct: 6 VLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGIEI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ S ++ +++L+ARG + D+V GL GADDY+TKPFS ELVARI A +RR Sbjct: 66 CRKIREHS---NVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQD 122 Query: 125 P-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 ++V+ + + ++ + + +P+ + EF+LL F + +V+S+ QL Sbjct: 123 RWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQL 182 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ VWG + Y ++ T+ V+IRR+R+ +E H +QTV G GY+FST Sbjct: 183 LDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFST 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED+ I++ + +L+ + V+A D ++AV DL++LD LP G Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +K +K D+PV++LTARGEE D++ G G DDY+TKPFSP EL+ RIKAV+RR Sbjct: 63 VLKEIKNR---EDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRY 119 Query: 124 SP-MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 EE+++ ++++ + V+ EP+E+ E+ LL +P R++++EQ+++ Sbjct: 120 RKGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDR 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYR 224 +W + V V +RRLR+ +E R+++TV G GY+ Sbjct: 180 LWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+++DE I +++ LE+ G + A + + + E PDLI+LD M+P G + Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDIDGYE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 + ++ T P+V L+A+ E DR++G G DDY+ KPFS KEL+ARI A +RR Sbjct: 62 VCRKIRD---TVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRRE 118 Query: 123 -----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 ++ ++ + +++D S VM P+ + EF +L HP +V+S+E Sbjct: 119 KRAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 Q+ VWG + + TV HI+ +R +E ++TV G GY++ Sbjct: 179 QIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 139/228 (60%), Gaps = 4/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV++DE I E++ LE G+ ++A A+ + +E PDL++LD MLP S Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +++ES ++P++MLTA+ E+ + G G+DDYITKPFSPK+LVA++ AV+ Sbjct: 61 GENVCERIRKES---EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R+ E +I L +D + +V + + + +E+K+L +P +++SRE+L+ Sbjct: 118 KRVKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELM 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +++ N+ + DR +D HI+ +R L+ + ++T+RG GYRF+ Sbjct: 178 DYISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILVVED+ + +++ LE G+ A D +A+ EP LI+LD MLP S Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L+ E++ P++MLTARG + D+V GL GADDY++KPF+ EL+ARI+AV+ Sbjct: 61 GLEVCQRLRSENVV--TPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + L +D V + L++ EF++L + RE++ Sbjct: 119 RRTHQSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIY 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 VWG + V +RT+D HI RLR LE R + TV G+GYRF Sbjct: 179 QEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 129/220 (58%), Gaps = 11/220 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VEDE + + L + D +++ + DLI+LD MLP +G++ Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++++ + P++++TA+ + D+V GL+ GADDYI KPF +EL+ARI+A++RR Sbjct: 63 ICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR- 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +++I++ G L +V +E+ TE+ LL+ + V REQ+LNHV Sbjct: 119 --QPQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHV 171 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 WG N VE VDV+IR LR L+P D+M++TVRG GY Sbjct: 172 WGYNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGY 211 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 14/234 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVVED + E++ L G+Q A D +A++ + PDL++LDWMLP G+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +++ T+ PV+MLTAR EE D V GLE GADDY+TKPF +EL+AR++A++RR Sbjct: 66 EVLRTIRQ---TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122 Query: 123 ---------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 EV+ L LDP H V ++ L++ PTEF +L + +P R Sbjct: 123 DQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRA 182 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +SR LL+ +WG + DR+VD + RLRK L G ++TV G GYR Sbjct: 183 FSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA--IETVWGLGYRLQA 234 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+DE P+ +MV L + GF +A AV++ PD+++LD LP G++ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 + ++ S D ++MLTARG E+D++ GL GADDYITKPFS +ELV R+ AV+RR Sbjct: 102 VCRRIRTFS---DCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRP 158 Query: 123 ---ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +P V + + L LDP +H+V GE +E+ TEF+LL P +V +R L Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYR 224 + VW T ++R VDVHI LR+ L R + TVRG GYR Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 139/225 (61%), Gaps = 3/225 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+L+VED+ IR+++ L ++ V+ E+ A + L + DL +LD MLPG +G Sbjct: 2 ERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 +K ++ ++ +D+PV++L+A+ +E D++ GL+ GADDY+TKPFS EL ARI++++RR Sbjct: 62 DILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 E +I++ GL +D V EEP+E+ EF+LL + + R SRE+L+N Sbjct: 122 SKK--DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQ 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +WG + E RT+DVHI LRK L + +Q+VR GYR + Sbjct: 180 IWGYDFIGESRTLDVHINSLRKKLG-NEYAHWIQSVRQVGYRLVS 223 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +LVVED+A IR ++ L G+ A D +AV Q PDLI+LD MLP G Sbjct: 10 GHTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + + PV+ LTAR EDR+ GL +G DDY+TKPF +E++ R++A++R Sbjct: 70 FRLTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILR 127 Query: 122 RISPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R A + GLSLD ++H V PL + PTEF+LL F+ HPERV + Sbjct: 128 RAGAPASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKA 187 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 ++L VW + + R VD +++ LR+ L+ GG ++ TVRG GY Sbjct: 188 EILQRVWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A ++LVV+D++ I E++ + L + G+ + A + A++ PDLILLD M+P G Sbjct: 10 APKVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + L++ ++ ++ LTAR EE V E GADDYITKP P+ L++RI A+ R Sbjct: 70 IETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFR 129 Query: 122 R-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLE-MGPTEFKLLHFFMTHPERVYSREQL 179 R + IE+ LS++ ++ V G E + EF+LL F P +V+SR++L Sbjct: 130 REAQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDEL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L +WG ++YV +RTVDVHIR+LR+ L D ++T++G GY FS Sbjct: 190 LQKIWGADIYVLERTVDVHIRKLREKLG----DTYIKTLKGVGYMFSN 233 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+VEDE I + V L++ G+ AED + D+I+LD MLPG G Sbjct: 16 TMKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDG 75 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +K L++ T +PV+++TARGE ++R+ GL GADDY+TKPF EL+ARI+A+ R Sbjct: 76 LSILKSLRKSGNT--VPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHR 133 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R S ++ ++++ L ++ ++ V E +E+ EF LL + M P RV +R Q+L Sbjct: 134 RSSGKSLS-MMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILE 192 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 HVWG + VDV ++RLRK ++ G +++TVRG GYR Sbjct: 193 HVWGYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A+ ILVV+D+ I +++ LE + F + A + + A + D ++LD M+PG +G Sbjct: 3 AKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 F + ++ +S D+P++ L+AR + D++RGL G DDYI K SP E+VAR+KAV+R Sbjct: 63 FAFCRRIRAKS---DVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 119 Query: 122 R--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + E ++E L+L+ T+ + + + + P E++LL F+ HP V+S +QL Sbjct: 120 RSASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 L+ +W + + TV VH+ RLR+ +E + + + V G GYRF Sbjct: 180 LDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+DE +R ++ L + GF+ EA + + A+ D+ILLD MLP G Q Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++ + + ++MLTAR E +D+V GL GADDY+TKPF P+EL+AR+ +++RR Sbjct: 75 VCKKIREK---DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + E +E L + P V+ + +E EF L +R +SRE+L Sbjct: 132 AITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREEL 191 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 +N +WG E R VD HI+ +R+ + G +QTV G GY+F+ Sbjct: 192 VNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFN 239 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 134/227 (59%), Gaps = 2/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I VVED+ I E++ LE + E+ + + L E P L+LLD MLPG S Sbjct: 1 MGNYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI +K LK + + IP+++L+A+ E D+V LE GADDY+TKPFS EL +RIK+V+ Sbjct: 61 GIDALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + ++ + +++D ++ V E + + E+K+L + + + RV +RE+LL Sbjct: 121 RRSYKV-EDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFS 226 N VWG + E RT+D+H++ LR + + ++T+RG GY+ Sbjct: 180 NEVWGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKLG 226 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 3/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++V+EDE I E + L G + A + SA+ + E DL++LD MLP G+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ S +P+++LTARGE ++RV+GL+ GADDYI KPFS EL+AR+ A+ RR Sbjct: 78 VCRRLRAWSE--KLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA 135 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V+++ GLSL+ + V +E+ PTEF LL FM HP RV++R+ LL+ V Sbjct: 136 GISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRV 195 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 WG + V+VHI LR+ + ++++TV G GY Sbjct: 196 WGFTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTLRP 238 >UniRef50_D1B7S7 Two component transcriptional regulator, winged helix family n=2 Tax=Synergistaceae RepID=D1B7S7_THEAS Length = 228 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILVVEDE IRE++ + G+ + A D D AV+ PDLI+LD MLP Sbjct: 1 MRWRILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ E R +PV+MLTAR +E D V GLE GADDY+ KPFS EL+AR++A + Sbjct: 61 GWEVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHL 120 Query: 121 RRISPMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR EV I M L+L+P V+ PL++ PTE +LL M+ R+ S+E++ Sbjct: 121 RRSDSPQGGEVQISMGNLTLEPQG-DVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEI 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 L +WG +V + RTVDV++ RLR+ LE G ++TVRG GYR Sbjct: 180 LGKIWG-HVGSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYR 223 >UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZIT9_BREBN Length = 226 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+ +D+ +RE++ F L + G+ + D + A L + L ++D M+PG + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ D+PV++LTA+GE D+ +G G DDY+TKPF P EL+ RIKA++ Sbjct: 61 GWELCREIREF---YDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR M +++I + +D SH V EE + + EF+LL + P+R+++R+QLL Sbjct: 118 RRYQ-MVSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLL 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + + RT+DVHI+RLR+ +D ++ TVRG GY+ R Sbjct: 177 ELVWGGDTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEVR 224 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++L++ED+ IRE+ L+++ ++ A+D +N + P L+LLD +LPG Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ M + P++ L+ + + D+V+GL+ GADDY+TKPF EL ARIKA + Sbjct: 61 GYEICQKIR---MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 121 RRI----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR + + V L +D S+ V + + E +LL + + V+S Sbjct: 118 RRSKMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 E++ + +WG + + +TV VHI LR+ +E ++++TVRG GY+FST Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFST 229 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 131/230 (56%), Gaps = 5/230 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RIL+ ED+ + + L+ G+ +D DSA+ + DLILLD MLP S Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K L+ + +P++MLTARGE D+V GL++GADDY+TKPF EL+ARI+A++ Sbjct: 61 GFDVCKKLRESEI--GVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALL 118 Query: 121 RR--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + ++ G+++D V +P+ + E++LL + + H +RE Sbjct: 119 RRAPVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRED 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 LL VWG + + RTVDVH+ LR+ LE + R +QTVRG GY+ S Sbjct: 179 LLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSD 228 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 7/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA + +VEDE I E++ LE++G++ A++ + ++ E PD ++LD MLP Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K ++ +T D+P++ML+A+ EEDR+ G+ GADDY+TKPFSP+E++ R++A++ Sbjct: 61 GEEICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAIL 117 Query: 121 RRISPMAVEEVIEMQ--GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + E+ + +D V+ E + + P EF ++ HP RV+SR Sbjct: 118 RRTRTLNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRAD 177 Query: 179 LLNHVWGTNVY-VEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 LL + + + +R++DVHI+ LRK LE + + TV G GY+F + Sbjct: 178 LLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGK 229 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 137/226 (60%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + +L+VED A +R+M+ LE++G++ A + + + PDL+LLD M+PG G+ Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 +F++ + T +PV+ LTAR E D+V GLE GADDY+TKPFS EL+AR++A +RR Sbjct: 83 EFLRRFRA---TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S V+ L LDPT+ + E +++ +EF+L+ F+ P RV++R +LL Sbjct: 140 SSEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ 199 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFST 227 + +RT+DVH+R LR +E G R+++TV G GYR + Sbjct: 200 L-QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNP 244 >UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYV2_9CLOT Length = 232 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 145/228 (63%), Gaps = 3/228 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + ++L+++DE I E++ F LE +G++ + + D + E PDLILLDWMLP SG Sbjct: 5 SEKVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ +K +++++ + IPV+MLTA+ E+D+V GLE GADDYITKPFS KEL+ARI +VMR Sbjct: 65 IEVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMR 124 Query: 122 RISPMA--VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R E + L L+ T H V ++ +++ EF+LL + + +V SR L Sbjct: 125 RYGMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 L+ +WG Y E RTVDVHIR LRK LE G D + ++T+RG GY+ Sbjct: 185 LDEIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKID 232 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 10/232 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I +++ LE+ GF D A + DL+LLD MLPG G Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q + ++ S T P++MLTA+G+ E++V+GL GADDY+TKPF EL+ARI A++RR Sbjct: 64 QVCQKIRETSYT---PIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 123 ISPMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 I E +E L D + + E+ + + E +LL + M +P +V+ R Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 E+L+ +WG + EDR +D++I+RLRK L+ ++TV G GY+F Sbjct: 181 EELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 IL+VEDE ++ ++ L + GF+ + A+ + A++ L+ DL ++D M+P G Sbjct: 2 PTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 F+K L+ T +PV+ LTAR +E+DR+ GL G DDY++KPFS EL+ARI+AV+RR Sbjct: 62 DFVKKLRE---TSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRR 118 Query: 123 ISPMAVE--------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 E++ ++G+ L+ + V + P+ + EF LL F H +V+ Sbjct: 119 TYQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +RE LL VWG + +RTVD HI+ LR L+P G+ ++QTV G GY+ Sbjct: 179 TREHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN--VIQTVWGIGYKL 227 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+++D+ I E+V LE G+ AED + PDL++LD MLP G Sbjct: 2 PRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++RE T DIP++MLTA G+ +D+V G GADDY+TKPF +E++ R++A++RR Sbjct: 62 TVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRR 121 Query: 123 ISPMAVE----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + E++ L+L P + ++ +++ EF+LLH + + S + Sbjct: 122 SDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSE 181 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +L VWG + + T+ VH+R LR LEP + ++TV G GY Sbjct: 182 ILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 131/234 (55%), Gaps = 15/234 (6%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L EDE I V L++ GF + D A + + D+ILLD M+PG G+ Sbjct: 2 HVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGLF 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +K+L++ R+ PV++LTAR E +DR++GL GADDYI KPF +EL+ARI AV+RR Sbjct: 62 ILKNLRQVG--RNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRS 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEP------------LEMGPTEFKLLHFFMTHPE 171 + ++ + LD + V E +E+ EF LL + M P Sbjct: 120 AGEQPN-LVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPG 178 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 RV++R Q+L HVWG + VDV I+RLRK ++ G++R +++VRG GYRF Sbjct: 179 RVFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ LE + F+ D S +N++ E DLI+LD MLP G Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ + T+D+PV+M++A+ EE D+++GL GADDYITKPFSP ELVAR+K+ ++ Sbjct: 62 DILRII---HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQN 118 Query: 123 ISPMAV-------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 + VI ++GL ++ S +V+ ++ + + EF LL +P RV+ Sbjct: 119 YERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFG 178 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFST 227 +++L +WG + + TV VHIRR+R+ +E + ++TV G GYR Sbjct: 179 KDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 12/235 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +IL+V+D+ + +V L G+ A D + L ++LD M+P G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +K L+++S DIPV+MLTA GEE DR+ GLE GADDY+ K FS +EL+AR++AV R Sbjct: 70 FEMLKQLRKQS---DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTR 126 Query: 122 R--------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 R + + + L + + +PL + P E+ LL P RV Sbjct: 127 RHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARV 186 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 SR+QLL+ V G + V DR+VDVHI LR+ L + R +QTVR GY F+ Sbjct: 187 LSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFND 241 >UniRef50_B2UR51 Two component transcriptional regulator, winged helix family n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UR51_AKKM8 Length = 234 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 138/226 (61%), Gaps = 3/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA IL+ ED+ I ++V + LE+ G P+ A D +A+ P+LILLD M+PG Sbjct: 1 MA-TILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMD 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G ++ L+R+S T++IPV+ LTA+ + EDR++GLE GADDY+TKPFSPKELV R+ +V+ Sbjct: 60 GHGVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVL 119 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R + E + D + + +E +++ TEFKL+ + + +R LL Sbjct: 120 KRCEHTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDLL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + VWG + + RT+D H++RLR+ L P ++TVR GYRF+ Sbjct: 180 SCVWGYSHQAQSRTLDTHMKRLRQKLAPYAD--CIETVRSIGYRFT 223 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++ILV++DE IR++ VL++ GFQ AE+ + +LN PDL+LLD MLP SG Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K + ++S +IPV+M++A+ E D+V GLE GA+DYITKPF +EL+ARIK V+RR Sbjct: 62 DLCKEIVKQS---NIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRR 118 Query: 123 ISPMAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + + L ++P + V + + E+ +L P+++++R+ Sbjct: 119 YEHNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 +LL VWG + + R+VD+ I RLRK +E + V+T+ G GY+ Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLG 228 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I + E G+ + A + A+ ++ D+ILLD M+P Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNID 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q + ++ + P++ L+AR E D+++GL G DDYI KPFS KEL AR++A + Sbjct: 60 GFQVCQKIRDK---VSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 RRIS--PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR P+ I L+LD S +V EE + EF ++ HPE+V+S+EQ Sbjct: 117 RREKRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQ 176 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKA-LEPGGHDRMVQTVRGTGYRFS 226 + VWG + + TV HI+++R ++ + TV G GYR+ Sbjct: 177 IYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 5/219 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I ++V L ++GF D D+ + P + +LD LPG G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR++ Sbjct: 71 CRRLREAGDW--TPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVA 128 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + G++LDP V A +P+++ TEF LL M P RV++RE+LL VW Sbjct: 129 GPPPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVW 188 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 G V RTVDVH+ ++R L P + +++T RG GY Sbjct: 189 GYAVPAGTRTVDVHVAQVRAKLGP---ESVIRTHRGVGY 224 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL++ED+ I +V LE+ F+ V D +S + E L+L+D MLP G Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ S ++P+++++A+ + D+V+ GADDY+TKPFSP EL AR+KA +RR Sbjct: 63 CEKIRASS---EVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 125 P--MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 E+ ++ + +D RV A E + + EF+LL F HP RV+++E+L Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 VW + + + RTV VH++ +R L+ G H + ++TV G GY+F Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 144/225 (64%), Gaps = 7/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSGI 62 ++LVV+DE+ +R++V L ++ + +EAE+ + AV+ + LI+LD M+P G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q K +++ S +P++MLTA+ +E+D + G E G D+YI+KPFSPK LVAR++A++RR Sbjct: 65 QVCKEIRKYSK---VPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S ++E +E+ G+ +D +H V + +E+ EF+LL +F+T+ SRE++LN+ Sbjct: 122 -SIQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNN 180 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + + + RT+D H+++LR + G ++T+ G GY+F Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKMGDKGD--YIKTIWGMGYKFEV 223 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ + L+VED+ + E + GF+ A+D A+ + D+I+LD ++P Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K L+ +S +IP++MLTA+ + ED++ GLE GADDYITKPFS KEL+ R+K V+ Sbjct: 61 GVKVCKQLRLQS---EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + EE I ++ L++D +V + + + P EF+LL +P + RE LL Sbjct: 118 RRYNKVQ-EEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLL 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N VWG + VDV+I+ +R LE +++ T+RG GY ST Sbjct: 177 NKVWGIASDYDSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYMLST 222 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 144/229 (62%), Gaps = 9/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +++LVV+DE I E++ F LE+NG+Q ++ + +L + PDL++LD MLPG G Sbjct: 9 GQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGG 68 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K +K + +P++M+TA+ E + V GLE GADDY+ KPFS +EL+AR+++V+R Sbjct: 69 MDLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 122 RISPMAVEEV----IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R EE I + + L+ +H+ +++ E+K+L+ FMT+P ++R+ Sbjct: 126 RTKEGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRD 185 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +LL+ VWG ++YV DR VDV+I+RLR L ++T+RG GYRF+ Sbjct: 186 KLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFN 232 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L++EDE + +++ LE+ G+Q + D + + + PD+++LD MLP SG + Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +++E ++ P++MLTA+G E++++ GL GADDY+ KP SP+E++AR+K ++RR+ Sbjct: 69 IARKIRKE---QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRV 125 Query: 124 SPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +E+I +++D + ++ + + TEF +L +P++V+SRE L Sbjct: 126 GKEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLA 185 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + ++G + RT+D HI+ LR+ +E ++TV G GY+F Sbjct: 186 DRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFG 232 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 8/228 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+A +R ++ LE G++ + + ++ P +++LD M+PG G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+ S ++PV+MLTA+GE+ DR+ GLE GADDYI+KPF+P+EL+ARIKAV+RR Sbjct: 67 LRDLRPHS---NVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAK 123 Query: 125 PMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 I + G+ L ++ + LE+ TEFKLL M +P R +R+ L+ Sbjct: 124 GPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG + DR++DVHI +LR +P H+ ++TV GTGY F + Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVS 231 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 138/229 (60%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++L+VED+ I +++ L+ G+ P A + LN PDLILLD LP GS Sbjct: 1 MNTQVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G F K + + IP+++LTA+ + D+V GLE GADDYITKPF KE+ +RIKAV Sbjct: 61 GFDFCKDINAKYT---IPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVF 117 Query: 121 RRISPMAVEEVIEM----QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RRI A ++ + ++ + V+ +E +++ P E++LL FF+ + +V+SR Sbjct: 118 RRIEKSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSR 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 EQL++++W + + RTVD+HIRR+R L+ GH +++TV G GY Sbjct: 178 EQLIDNIWEFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ILVVED+ I+E++ L + V A D + Q N+ DLILLD M+P +G + Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++ +S ++P++MLTA EEED+++G + G DDYITKPFS L+ R++AV+RR Sbjct: 65 VSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V + + + +D ++RV + + + EF++L + +V +RE ++ V Sbjct: 122 YDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKV 181 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG + + E R +D HI+ LRK L ++T++G GY+ Sbjct: 182 WGYDYFGETRIIDTHIKNLRKKLAIP----YIKTIKGIGYKID 220 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 7/223 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+D+ I +V EQ F A + L PDLI+LD MLP SG+ Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 IK LKR+ +IPV+ LTAR + D + GLE GADDYITKPF+P+ L+ARIKAV RR Sbjct: 62 VIKKLKRK--YEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRY 119 Query: 124 SPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + V+++ + +D S+ ++ + E+ EF+LL + +P +V++R+++L+ Sbjct: 120 EMGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDR 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + + + RTVDVHI +LR+ + ++TVRG GY+ Sbjct: 180 VWGMDFFGDFRTVDVHISKLREKIGS----EFIKTVRGVGYKL 218 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 4/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A IL++ED+ + + E G+ A D D+ + P LI+LD MLP +G Sbjct: 4 AETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ E + ++P++MLTA+G+E D V GL+ GADDY+TKPFS KEL+AR++A +R Sbjct: 64 YEICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLR 121 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R V D T+ ++ + + + P EF LL F +T+ R SR+++++ Sbjct: 122 R-QRKQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMS 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + V R++D + LR +EP R+++TVR GY+F Sbjct: 181 TVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDE I E+V L+ G Q D ++AV ++ DLI+LD MLPG G + Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 I+ P + L+A+ DR++G GADDY+TKPF EL+AR++AV+RR Sbjct: 64 IEQ------ANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQ 117 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 A E + +D +SH+V + +E P E++LL + + SRE+LL VW Sbjct: 118 RTAS--CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVW 175 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 G + + RTVDVHI++LRK LE + ++TV GYR Sbjct: 176 GYDFEGDTRTVDVHIQKLRKKLE---WEDRIKTVYKLGYRLEV 215 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 4/218 (1%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 L+VEDE + + LE GF D S + + DLILLD MLP SGI+ Sbjct: 14 LLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIELC 73 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISP 125 + ++ T+D+P++M+TARGE D V GL++GA+DY+ KPF+ +EL ARI+ ++R+ Sbjct: 74 RRIRE---TKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRES 130 Query: 126 MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWG 185 A +E++ + L + P + RV EE + + P EF LL++ + + E+ SREQ+L VWG Sbjct: 131 KANQEIV-VGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG 189 Query: 186 TNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 + VDV+IR LR +E +++ TVRG GY Sbjct: 190 FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGY 227 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 137/227 (60%), Gaps = 9/227 (3%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 ++VED+ I EMV L + GF V A D + + + DL+LLD MLP +G+ F+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISP 125 K ++ +S +IPV+M++A+ + D+ GL GADDYI KPFS EL AR+KA +RR + Sbjct: 61 KIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 117 Query: 126 MAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + EE VI + L++D + V+ EPL++ TE++LL F ++P++V+++EQ+ Sbjct: 118 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VW + + ++VH+RRLR+ +E + ++T+ G GY+ Sbjct: 178 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLG 224 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 136/227 (59%), Gaps = 9/227 (3%) Query: 1 MARRI--LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M ++ +VVED+ +R ++ LE G+ V E A+ + P+L++LD MLP Sbjct: 1 MENKVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G + ++L++ + D+ ++MLTA G ++D++ G E GADDY+TKPF +EL+ARIKA Sbjct: 61 MDGYEVAQNLRK--LKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKA 118 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++RR +++ + I+ L + V+ + +++ TEF LL + + +RV S+E+ Sbjct: 119 LLRR-KNISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +L+ VWG + Y D TV+V++ +RK L +++T+RG GY+ Sbjct: 178 ILDAVWGIDYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+V+DE IR ++ L+ G+ +A+ + A+ L + L++LD M+P Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ +IP++ML+A+GE+ D+++G+ TGADDY+ KPF+ EL RI+A+ Sbjct: 61 GFEVCSKVRER---YNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALF 117 Query: 121 RR-----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR +++I ++ + +D H++ + + EF++L+ T+ RV+S Sbjct: 118 RRTYFLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFS 177 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 E++ VW Y + TV VH+ RLR LE ++++ TV G GY+ Sbjct: 178 AEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+ +DE + + + +E G++ V+A + ++ +N+ DL+LLD M+P G++ Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 ++ L+ +R IPV+M+TA+ +E DRV GL +GADDYI KPFSPKEL+ARI+A +RR Sbjct: 67 ALRELR---TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRN 123 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + +E ++ + + ++ S +V E + + EF LL FM HPE+V++REQLL Sbjct: 124 YGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLL 183 Query: 181 NHVWGTNV-YVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +HVWG N RTVD H++ +R + GG +TV G GY Sbjct: 184 DHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGD--YFRTVYGVGYVLED 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 135/230 (58%), Gaps = 11/230 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+++DE I E++ L G++ +A + +N +NE +++LD M+PG G Q Sbjct: 4 VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 ++++ +IP++ML+A+ ++ D+++GL TGADDY+ KPF+P EL+AR+K+ +RR Sbjct: 64 CMKIRKD---YNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 124 ------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++IE + ++++ +H+V+ + L++ P E+++L + V+S E Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VW + + TV VHI RLR+ +E ++++TV G GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED++ I+E++ L G+Q A D + + + DL++LD M+P Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K +++ S +P++ LTA +E D+++G + DDYITKPFS L+ R++A++ Sbjct: 61 GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + ++ I + L LD ++ EP+E+ EF +L + +V +RE LL Sbjct: 118 RRSNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + +WG + Y + R VD HI+ +RK + ++TV+G GY Sbjct: 178 DSIWGYDYYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLE 219 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 130/220 (59%), Gaps = 6/220 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VEDE + + LE + D + + DLILLD MLP +G++ Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +++ T P++++TA+ + D+V GL+ GADDYI KPF +EL+ARI+A++RR Sbjct: 63 ICRQIRQNQTT---PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR- 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + +I+++G+ +D + +V +PL++ TE+ LL + + V REQ++ V Sbjct: 119 --QPQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDV 176 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 WG + VE VDV+IR LR L+P G D+ ++TVRG GY Sbjct: 177 WGYDTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGY 216 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 12/234 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+++DE I +++ L+ + + A++ + DL +LD MLP + Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++++ P++MLTA+ EE D++ GL GADDY+TKPF P E+VAR+KA + Sbjct: 78 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 RRISPMAV-------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR + + L L+ +H + E + + PTEF +LH ++ V Sbjct: 135 RRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNV 194 Query: 174 YSREQLLNHVWGTNVYV-EDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 S E+L + VW Y T+ VHIR LR+ L + ++T+ G GY+ Sbjct: 195 VSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I+VV+DE IRE++ L GF+ A A+ + + PDLI+LD MLP G Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + +++E + PV+ LTAR + +D+V GL G DDY+TKPFS +E+VARI+A++RR Sbjct: 74 TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131 Query: 125 PMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 ++ +I + L ++ SH V +P+++ PTE+KLL + M + RV S+ Q+L+HV Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191 Query: 184 WGTNVYVEDRTVDVHIRRLRKAL----------EPGGHDRMVQTVRGTGYRFST 227 W + + V+ +I LRK + E +++T RG GY Sbjct: 192 WQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA RIL++EDE P+R + LE G++ + A D + + ++ PDL+LLD M+P Sbjct: 1 MA-RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLD 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G L+R + +P++MLTA+G+ EDRV GL+ GADDY+ KPFS EL+AR++A++ Sbjct: 60 GFALCAELRR--LANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAML 117 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + + +D G + L E+ +L P SRE+ Sbjct: 118 RRHQREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERF 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 L+ VWG + RTVD HI LR +E R ++TV G GYR Sbjct: 178 LDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVVEDE I ++V L ++GF D + + P +LD LPG +G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR Sbjct: 71 CRRLREAGDW--TPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTV 128 Query: 125 --PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 P VE V + ++LDPT V EP+++ TEF LL M P RV++R +LL Sbjct: 129 GVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAA 188 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VWG + RTVDVH+ ++R L GG +++T RG GY Sbjct: 189 VWGYAAHSSTRTVDVHVAQVRAKL--GGAAGVIRTHRGVGY 227 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ RILVVEDEA I + + L + G+ AED LN DL++LDW LP Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ ++ ++++ T PV+ LTAR +RV GL+ GADDY+TKPF+ EL+AR++A++ Sbjct: 61 GIQLLRRFRQKNRT--TPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR A V+E + D + RV G PL++ EF LL FF+ +P +V SR ++ Sbjct: 119 RRP-GQASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIY 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VW + T++VH++ LR LE G R++QT+RG GY T Sbjct: 178 DTVWDDSYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLET 223 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ RILVV+D+ +RE + L NG+ A D A+ + PD ++LD M+P Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L+ S D+P+++LTAR +RV GL+ GADDY+ KPF+ +EL+AR++A++ Sbjct: 61 GLEVCRQLR--STGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 RRIS----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR A + LSLDP + V G + + TEF LL + +P RV +R Sbjct: 119 RRTKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 ++L VWG + ++V++ LR+ E G R++ TVRG GY Sbjct: 179 SRILEEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DE+ IR ++ LE G++ + A D A+ + NE PD+++LD MLP G + Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ + + RDIPV+MLTA+ + D++ GL+ GADDY+TKPF+ EL+ R+K + RR+ Sbjct: 79 LLRLFREK--DRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 136 Query: 124 SPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 EVIE +++ P +V + +++ EF L F+++P+RV+ R++LL Sbjct: 137 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 196 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG R VD+ ++RLRK L G ++T+ G GY+ Sbjct: 197 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSGE--YIKTIYGVGYKLDC 241 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 17/240 (7%) Query: 1 MARR----ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML 56 M++ I+VV+DE IRE++ L GF+ A AV + P+LI++D ML Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 PGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 P G + +++ + +PV+ LTAR + +D++ GL G DDY+TKPFS +E+VARI Sbjct: 61 PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KAVMRRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 +A++RR P +I++ L ++ SH V P+E+ PTE+KLLH+ M + RV S Sbjct: 119 RAILRRTQEPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLS 178 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKAL------EPGGHDR----MVQTVRGTGYRF 225 + Q+LNHVW + + V+ +I LRK + + G + +++T RG GY Sbjct: 179 KSQILNHVWQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61 +IL++EDE + + LE+ G+ A D + A + DL++LD MLP G Sbjct: 2 KILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDG 61 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I K L+ ++ P++MLTA+ + ED++ GLE+GADDY+ KPFS +EL+ARI+A++R Sbjct: 62 ISLCKDLRAKNFQA--PILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLR 119 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + V++++ +SLD S RV G+ + + EF +L + M + R+ S+EQ+++ Sbjct: 120 RPKNL-MPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIIS 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 HVWG V+ HI+ LRK LE + +++T+RG GYR Sbjct: 179 HVWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+L+VEDE I M+ L G+ + AED ++ + E D++LLD MLPG G + Sbjct: 2 RVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGRE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ +PV+MLTAR E E +V L+ GADDY+TKPF+ +EL+ARI+A++RR Sbjct: 62 VLRR--LRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRA 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + L LD S RV +E+ EF LL + M HP +V SR+Q+L+ V Sbjct: 120 DQ-PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAV 178 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 W VDV++R LR+ L+ G ++ TVRG GYRF Sbjct: 179 WDYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDP 222 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+DE I +++ L+ GF A++ +A+ PD +LD M+PG G Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ D P + LTA+ EDR+ GL GADDY+TKPFS +E++ R++ ++RR+ Sbjct: 91 LLNKLREAG--HDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRV 148 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + EE +I + ++LD H V E +++ PTEF+LL + M + E V S+ ++L+ Sbjct: 149 AKDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILD 208 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 HVW + + V+ ++ LR+ ++ R++ TVRG GY Sbjct: 209 HVWNYDFGGDGNVVESYVSYLRRKIDT-KEPRLIHTVRGVGYVL 251 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+DE I ++V L GF+ +A+ ++ PDL++LD ML G Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ +P + LTAR +D+VRGL G DDY+TKPFS ELVAR++A++RR Sbjct: 140 VCERLR--GAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRA 197 Query: 124 SPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + + L LDP + V +E+ TE++LL F + + V +R QL Sbjct: 198 GSPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQL 257 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+HVWG + E ++ +I LR+ + ++ TVRG GY Sbjct: 258 LDHVWGHDFSGEGGVLETYISYLRRKV-DNVEPPLIHTVRGVGYVL 302 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I + + L+ G+ A + + + L ++D M+P GI Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ D PV+MLTA+ EE D++ GL GADDY+TKPF+P EL+AR+ + +RR S Sbjct: 66 VMKLREN---YDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYS 122 Query: 125 P--------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + + GL L+ + V+ E +++ P EFK+L M +P RV+S Sbjct: 123 KYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSA 182 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 E++ VW D TV VH+R +R+ +E + + ++ V G GY+ + Sbjct: 183 EEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 130/243 (53%), Gaps = 25/243 (10%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 + ++ILVVEDE I + + F L + F+ A + +SA+ E P L+LLD MLP S Sbjct: 2 LKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDIS 61 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K + ++S +VMLTAR + D++ G+E GADDYITKPF +E+ ARI A+ Sbjct: 62 GFELCKIMSQKSY-----IVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIF 116 Query: 121 RRISPMAVEEVIE--------------------MQGLSLDPTSHRVMAGEEPLEMGPTEF 160 RR+S E +++ + V+ + + + EF Sbjct: 117 RRVSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEF 176 Query: 161 KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRG 220 LL + + V++R+QLLN VWG + Y + RTVDVHIRRLR L + +V+TV G Sbjct: 177 DLLSYLYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKENSIVETVFG 236 Query: 221 TGY 223 GY Sbjct: 237 VGY 239 >UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXI2_METI4 Length = 258 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 139/227 (61%), Gaps = 4/227 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++ILVVEDE + ++C L GF+ + A++ A+ + PDLI+LD M+P SG Sbjct: 31 KKKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSG 90 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K+LK++ T IP+V+LTA+ + DR+ GLE GADDYI KPFSP+EL+ RI++++R Sbjct: 91 LDVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILR 150 Query: 122 RI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R E++ + G+ LDP ++ +E+ P EF+LL + V SREQL Sbjct: 151 RRLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQL 210 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 L VWG + V+ RT+D HIRRLR L + ++TVRG GYRF Sbjct: 211 LKEVWGYDKTVDTRTIDTHIRRLRDKLGRAS--QYLRTVRGIGYRFK 255 >UniRef50_C1SGQ1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGQ1_9BACT Length = 223 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 136/221 (61%), Gaps = 3/221 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LV+ED IR+++ + L + F+ + ++ + + L D+ILLD MLPG G+Q Sbjct: 3 KVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKGMQ 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F++ ++ +P+++++A+ E+D + GLE GADDY+TKPFS K L+A+I A++RR Sbjct: 63 FLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILRR- 121 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P +VI + G+++D ++ V E + + E++LL + HP+RV++R Q+LN V Sbjct: 122 NPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNAV 181 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG V RTVD H+ LRK L G +++V GYR Sbjct: 182 WGYESDVYTRTVDTHVSSLRKKLGTRGS--FIKSVPKIGYR 220 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 134/235 (57%), Gaps = 13/235 (5%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M + RIL++EDE I +++ + L + GF+ A + +L PDL++LDWMLP Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG+ K + + +IP++MLTAR + D++ GLE GADDYITKPF +E+V RI+ + Sbjct: 61 SGLDICKQV---TAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTI 117 Query: 120 MRRIS------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 +RR++ A VI + + + V E +++ P EF LL + R+ Sbjct: 118 LRRLAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRI 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 ++R +LL VWG + + RTVD HI+RLRK L+ ++ TV G GY+F R Sbjct: 178 FTRAELLESVWGYDFPGDMRTVDTHIQRLRKKLDAA---DLITTVFGIGYKFEKR 229 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 137/241 (56%), Gaps = 19/241 (7%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +R IL+ +D+ IRE++ LE G++ EA D A+ + DL+LLD M+P G Sbjct: 8 SRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Q ++ ++ T +PV+M++A+G++ D++ GL+ GADDY+TKPF+P E +AR+++ +R Sbjct: 68 YQVLRRVRE---TSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLR 124 Query: 122 RI---------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFF 166 R +P+ V V+ ++ L+LD + + G+EPL++ P EF++L F Sbjct: 125 RAYGMPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLF 184 Query: 167 MTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 M+HP RV++++Q+ WG V V I +LR L + TVRG GYR Sbjct: 185 MSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA-YIATVRGLGYRME 243 Query: 227 T 227 Sbjct: 244 A 244 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A IL+ +D+ + ++ + F A D A+ +L E PD+++LD M+PG G Sbjct: 3 ANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ + DIP++ L+A+ +E DR+ GL GADDY+ KPF +EL+AR+K+ +R Sbjct: 63 FEVCRRARQFT---DIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLR 119 Query: 122 RISPMAVEEV--IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + +V E++ L +D V + + + PTEF LL + P+RV+SR QL Sbjct: 120 RRRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQL 179 Query: 180 LNHVWGTNVY-VEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L G Y +RT+D HIR LRK LEP + TV G GY+F Sbjct: 180 LEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQ 228 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + I++V+DE +REM L+ G+ + AED + A++ + + PDLILLD +PG G+ Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ + IPV+ L+ R D+V E GADDY+TKPF +EL ARIKA +R Sbjct: 62 EVCREIRSQ---LSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRM 118 Query: 123 I--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +P + + L +DP + + E + + E KLL F HP +V++ EQL Sbjct: 119 YAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLY 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 + +W + TV VHI LR+ +E + +QTVRG GYRF Sbjct: 179 DRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224 >UniRef50_Q1ASD3 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASD3_RUBXD Length = 241 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VED+ I + + L + GF+ A + + PDLILLD MLPG SGI+ Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ E D+ ++M+TA+ EED+VRG E GADDY+TKPF KELVARI A ++R Sbjct: 68 CQRIREE--DEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 V+E LSLD + G EPL + EF+LL + P + SRE+L VW Sbjct: 126 AGHRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVW 185 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 G RT+DVHIRR+R ALE + T RG GYRF Sbjct: 186 GHAGVGSSRTIDVHIRRIRAALEKKSAYDYIHTARGLGYRFEP 228 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++IL+V+DE I ++ VL++ GF+ ++ + PDLILLD MLP Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +++ + +P+ L+A+ E+ D++ GL G DDYITKPFSPKE+ ++KA Sbjct: 70 GYSVCEQIRQFTF---VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFF 126 Query: 121 RRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + + +++D V+ L + EF +L F + +P +++S+ +L Sbjct: 127 RRNQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARL 186 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 VWG D + VH+R LR+ +E + TVRG GY+ +T+ Sbjct: 187 YEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTK 236 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+D+ I+ + L + GF+ A AV PDLI+LD LP G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ ++ +P++ L+ R ++ D++ G G DDYITKPFSP LVA++K+ +RR Sbjct: 66 CRIIRTKTK---VPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK 122 Query: 125 PMAVE-------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 ++ + L++D V +P+ + EF+LL + RV+S E Sbjct: 123 ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAE 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L + +WG + + + RTV VHI LRK +E + TVRG GY+F+ Sbjct: 183 HLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232 >UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S085_SALRD Length = 236 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ILVV+DE + +V + LEQ GF + A D A+ Q E PDLI+LD M+P GI+ Sbjct: 12 TILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIE 71 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L++++ R IP++MLTAR EE+D+V+GL+ GAD Y+ KP S +V++ KA++R Sbjct: 72 VCQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSA 131 Query: 124 SP-MAVEEVIEMQGLSLDPTSHRVMA----GEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + IE+ L +D + V GE + EF+LL+F +HP RV+SR++ Sbjct: 132 HRYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQE 191 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +L+ VWG +VYV DRTVDVHIR++R+ + ++TV+G GYR Sbjct: 192 ILDEVWGRDVYVVDRTVDVHIRKIREKIGS----EYIETVKGVGYRMK 235 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I + +C L F D + + D+I+LD MLPG G+ Sbjct: 3 VLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGLDI 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+++ + D P+++LTAR E DRV+GL+ GADDY+ KPF +EL ARI+A++RR Sbjct: 63 LRSLRQQGV--DTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + V+E+ L LD + + + +E+ EF LL M P +V +R QLL HVW Sbjct: 121 GTQ-QHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 185 GTNVYVEDRTVDVHIRRLRKA---LEPGGH-DRMVQTVRGTGYRFSTR 228 G + VDV I+R+R LE G ++++RGTGYR S R Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSIR 227 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 133/224 (59%), Gaps = 4/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE I + +C LE G+ A +A++ +++ DL++LD MLP G+Q Sbjct: 2 RILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGLQ 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ S PV++L+ARG +DRV+GLE GADDY+ KPF+ EL+AR++A++RR Sbjct: 62 VLEKMR--SRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRG 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P E +++ L+LD +V G E +++ P EF +L + M + R SR ++ HV Sbjct: 120 QP--TPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHV 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 W + VDV+IR LR ++ +++QTVRG GY Sbjct: 178 WDMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEA 221 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 14/233 (6%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL++EDE I+ ++ + + GF+ + ++ E P L++LD MLP S Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + L + + ++MLTAR + D+V GLE GADDYITKPF +E VAR+K + Sbjct: 61 GFDVCRELNKLNAN----IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVAL 116 Query: 121 RR-------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR + V++ + + + S +V EE + + P E +LL +F+ +P Sbjct: 117 RRKDKFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIA 176 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 SR+Q+L+ VWG + + RTVDVH+RRLR+ L ++ +++T+ G GY F Sbjct: 177 LSRDQILDGVWGDEYFGDFRTVDVHVRRLRQKL---NNEEIIETIFGLGYMFK 226 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 132/220 (60%), Gaps = 3/220 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV EDE + E++ L + G + + + A++ D +LLD MLPG G + Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + R +P++MLTAR E D +RGL+ GADDY+TKPFS EL+AR++AV RR Sbjct: 62 VARRLRHKG--RQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRT 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 P + + L+LD SH V G+ P+ + TEF LL M + R SR+ L+ +V Sbjct: 120 GP-HRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNV 178 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 WG + +E+ T+D IR LR+ ++ GH +++QTVRG GY Sbjct: 179 WGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++I VV+DE I E++ LE +G+ A + A+N N+ PDLI+LD MLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L++ S +P++MLT + +EED + GL+ GADDY+TKPFSP++LVAR+KA++RR Sbjct: 70 DICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 126 Query: 123 ISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 E+ + L ++ ++ V + + P E+ +L + +P ++++RE+ Sbjct: 127 TEDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ G N DRT+D HI+ LR +E + T+RG GY+F + Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_A6L7N3 Two-component system response regulator n=9 Tax=Bacteroides RepID=A6L7N3_BACV8 Length = 229 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVV+DE + E++ F LE G+ A + A+ ++ +L+LLD M+ SG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEAL-KMELTQYNLLLLDVMMGEISGFK 63 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 LK+ T IP++ +TA+ E D V G GADDYI+KPFS +E++AR+KAV+RR Sbjct: 64 MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123 Query: 124 SPM---AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 SP +E ++ +GL +D T +V + + EF++L + + RV+SRE +L Sbjct: 124 SPTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDIL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW VYV DRT+DV+I RLRK + G + + T G GY F Sbjct: 184 AKVWQEEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFEC 228 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 130/234 (55%), Gaps = 11/234 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R+L+ +DE I E++ LE++G A + A+ +N D+ ++D M+P Sbjct: 1 MA-RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQID 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G ++ ++ D+PV+ML+A+ E D++ GL+ GADDYITKPF+ E++AR+KA + Sbjct: 60 GYHLVRKIREN---YDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQL 116 Query: 121 RRISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + E+ +E L L+ + + + + TE+K+L + + + +V+ Sbjct: 117 RRYNKSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVF 176 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +++Q+ +VW Y +D + VHI LR +E + ++T+RG GY+ + Sbjct: 177 TKKQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDS 230 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 139/231 (60%), Gaps = 11/231 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61 +IL+V+D+ I +++ G++P+ A + A+ +LN PD L++LD M+P +G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNT-MPDISLVILDLMMPEMNG 60 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + I+ ++++S IP+++L+A+ + D+++GL TGADDY+TKPF+P E++AR+K+++R Sbjct: 61 MDVIRQVRKDS---SIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 RISPMAVE---EVIEMQGLSLDPTSHRV-MAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R +V+ + L ++ SH V +P+++ EF +L+ +HP RV+S + Sbjct: 118 RSENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 + VW V +TV VH+ LR +E G +++++TV G GY+ Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVEN 228 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 I +V+D+ IR++V L++ G+ E + A+ E PDL +LD MLPG +G + Sbjct: 5 HIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 F + ++ S + P++M++AR EE D++ GLE G+DDY+TKPFSP+ELVAR+ ++R Sbjct: 65 FCRRIRAGS---ETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRW 121 Query: 124 SPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 M E + L LD V + E +E+ EF++L HP R +SR++LL+ Sbjct: 122 KQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSL 181 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +WG + + DR VD IRR+RK L+ ++TV G GYR T Sbjct: 182 IWGFDYFGSDRVVDDLIRRIRKKLDKIP----LETVWGFGYRLRT 222 >UniRef50_A7GLY2 Two component transcriptional regulator, winged helix family n=9 Tax=Firmicutes RepID=A7GLY2_BACCN Length = 220 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED+ I+E++ L + A D + Q N+ DLILLD M+P + Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ +S +IP+++LTA EE+D+++G + G DDYITKPFS + R++AV+ Sbjct: 61 GFEVANIIRNQS---NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + + +D +++V + + + EF++L + + +V +RE ++ Sbjct: 118 RRSYGERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIV 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 VWG Y E R +D HI+ +RK L + ++TV+G GY+ Sbjct: 178 ERVWGYEPYGETRIIDTHIKNIRKKL----NTPYIKTVKGIGYKID 219 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+IL+VEDE + ++V L+ GFQ + A D SA++ ++ +L +LD MLP G Sbjct: 2 RKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGS 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +++++R++ PV+MLTA+ + D+V GADDYI KPFS EL AR+KAV+RR Sbjct: 62 EVLQYIRRKTSK---PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRR 118 Query: 123 I--------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 + + E ++ L ++ + V + + EF LL + P RV Sbjct: 119 TEGTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVV 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + Q+ VWG +D TV VHI RLR +E + + +QTVRG GYR Sbjct: 179 TIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 129/235 (54%), Gaps = 13/235 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 RR+L+VED+ I + LE GF D L + DLILLD MLPG SG Sbjct: 4 KRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ + DIP++M+TAR E D++RGL GADDYI KPF P ELVAR+ A +R Sbjct: 64 YDICREIREQ---VDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLR 120 Query: 122 RISPMAVE---------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 + M + E I + L + S +V GE ++ EF+LL F +P Sbjct: 121 QYDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNI 180 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 V+SREQL +WG + + TV VHI R+R+ +E + ++++TV G GYRF+ Sbjct: 181 VFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFN 235 >UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7B4Z9_RUMGN Length = 236 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 136/231 (58%), Gaps = 7/231 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++IL+VED+A I ++ ++E G+Q + A+ + PD +LLD MLPG +G Sbjct: 7 RQKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTG 66 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++++ +++PV++L+A+ +D+V+ L GADDYITKPF P+E++AR++A MR Sbjct: 67 EAVLDQIRQK-QKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMR 125 Query: 122 RISPMA-----VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 R + A +EV + LSL P S +V L + E+ +L+ + +P++VYSR Sbjct: 126 RYTKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSR 185 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 E L VW Y ED TV+VH+ LRK + + + ++TV G G++ Sbjct: 186 EHLYEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+L++EDE I + LE+ F A D +S + DL L+DWMLP SGI+ Sbjct: 2 RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGIE 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L++ +PV+ LTAR +D V GL GADDY+ KPF+ +EL+ARI+A +R+ Sbjct: 62 VCRQLRKAGSA--VPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQN 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P + L LDP +HR L + P EF LL + + + +RV +R +++ HV Sbjct: 120 TPTTGP--LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHV 177 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 W + + +DV++ LR+ LE G +++TVRG GY T Sbjct: 178 WDIHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRT 221 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 21/242 (8%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSG 61 +IL+VED + EM+ ++ + A D + AV Q + D+I LD LPG G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 +Q + ++ +S +P++MLTAR E D+V GLE GADDY+TKPFSP L+ARIKA+ R Sbjct: 62 MQVAQKIREQSKV--VPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHR 119 Query: 122 RIS---------PMAVEEV------IEMQGLSLDPTSHRVMAGEEPL-EMGPTEFKLLHF 165 R VEEV ++ + + +EP+ ++ P EF LL Sbjct: 120 RAELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKT 179 Query: 166 FMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +P +V+SREQLL VW + ++RTVD HI++LR+ +E G +++QTV G GY+F Sbjct: 180 LAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG-PQVIQTVWGVGYKF 238 Query: 226 ST 227 Sbjct: 239 DD 240 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 LVVED+ + ++ + L + G++ ++A+ +L L+LLD MLPG G + Sbjct: 24 LVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGMDGFELC 83 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR--RI 123 +H++ + RD+P++M+TA+GEE DR+ G E G DDY+ KPFS +EL RI+A+++ R Sbjct: 84 RHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKRERR 143 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +EV+ GL +D H V + L + EFKLL + SRE LL+ V Sbjct: 144 QSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLLSDV 203 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 W + + RT+D HI R+R+ L G +++TVRG GYR + Sbjct: 204 WDIDKSISTRTIDTHITRIREKLGNYGA--LIKTVRGLGYRLEPQ 246 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 12/233 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++L++EDE + + L + G+ A D S + E LI+LD MLPG +GI Sbjct: 2 KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K L+++ +T P++MLTA G E+ V GL++GADDY+ KPF EL+ARI++++RR Sbjct: 62 VCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRN 119 Query: 124 SP----------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 + + V+++ L LD + + + + TE++LL + M +P+RV Sbjct: 120 NDTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRV 179 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 SR ++L +VWG + + + VDV++ LRK + ++QTV G GY Sbjct: 180 LSRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLK 232 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+VEDE+ I E++ L + G++ + D V+ + +ILLD MLP G Sbjct: 3 NEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +++ S D+P++M+TA+ EE DR+ G E G DDYI KPFSP+E+VAR+ AV+R Sbjct: 63 KTVCREVRKFS---DVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLR 119 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + ++V+ + + L+ TS L + P+EF + + P RV++R QL+ Sbjct: 120 RTFKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIE 179 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 V G N +RT+D HI+ LRK + ++++Q+ G GY+ Sbjct: 180 KVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 350 3e-95 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 347 1e-94 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 343 3e-93 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 342 4e-93 UniRef50_B8G179 Two component transcriptional regulator, winged ... 342 7e-93 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 342 7e-93 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 340 3e-92 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 340 3e-92 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 339 4e-92 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 338 8e-92 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 337 1e-91 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 337 2e-91 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 336 4e-91 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 336 4e-91 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 335 5e-91 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 335 7e-91 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 333 3e-90 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 332 6e-90 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 332 8e-90 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 331 9e-90 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 331 1e-89 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 330 3e-89 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 330 3e-89 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 329 3e-89 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 329 3e-89 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 329 3e-89 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 329 4e-89 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 329 4e-89 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 329 6e-89 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 329 7e-89 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 329 7e-89 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 328 7e-89 UniRef50_C4L340 Two component transcriptional regulator, winged ... 328 9e-89 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 326 4e-88 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 326 5e-88 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 325 8e-88 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 325 9e-88 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 323 2e-87 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 323 4e-87 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 322 6e-87 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 322 6e-87 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 322 9e-87 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 321 1e-86 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 321 1e-86 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B8G223 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 320 3e-86 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 319 4e-86 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 319 6e-86 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 318 6e-86 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 318 7e-86 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 318 8e-86 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 318 1e-85 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 318 1e-85 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 317 2e-85 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 316 4e-85 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 315 5e-85 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 315 6e-85 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 315 7e-85 UniRef50_A3ERN0 Putative two component transcriptional regulator... 315 8e-85 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 315 8e-85 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 315 9e-85 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 315 9e-85 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 315 9e-85 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 315 9e-85 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 315 1e-84 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 315 1e-84 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 315 1e-84 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 314 1e-84 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 314 1e-84 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_D1C280 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_B8I272 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 314 2e-84 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 313 3e-84 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 313 3e-84 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 313 3e-84 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 313 3e-84 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 312 5e-84 UniRef50_B8I014 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 312 6e-84 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 312 7e-84 UniRef50_D1C683 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_A4AL32 Putative two-component system response regulator... 311 9e-84 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 311 9e-84 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 311 1e-83 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 311 1e-83 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 311 1e-83 UniRef50_B8G869 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A4J267 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 310 2e-83 UniRef50_C4L703 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 310 2e-83 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 310 2e-83 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_P45189 Phosphate regulon transcriptional regulatory pro... 310 3e-83 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 310 3e-83 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 310 3e-83 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 310 3e-83 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 309 4e-83 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 309 5e-83 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 309 6e-83 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 309 6e-83 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 309 6e-83 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 308 6e-83 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 308 7e-83 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 308 7e-83 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 308 9e-83 UniRef50_B6BUZ2 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 308 1e-82 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 308 1e-82 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 308 1e-82 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 307 1e-82 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 307 1e-82 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 307 2e-82 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 307 2e-82 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 307 2e-82 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 307 3e-82 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 306 3e-82 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 306 4e-82 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 306 4e-82 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 306 4e-82 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 306 5e-82 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 305 5e-82 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 305 6e-82 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 305 7e-82 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 305 1e-81 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 305 1e-81 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 304 1e-81 UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacilla... 304 1e-81 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 304 1e-81 UniRef50_UPI0001B559F0 two-component system, response regulator ... 304 1e-81 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 304 1e-81 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 304 1e-81 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 304 2e-81 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 303 2e-81 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 303 2e-81 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 303 2e-81 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 303 3e-81 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 303 3e-81 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 303 3e-81 UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxal... 303 3e-81 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 303 4e-81 UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerot... 302 5e-81 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 302 5e-81 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 302 5e-81 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 302 6e-81 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 302 6e-81 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 302 6e-81 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 302 6e-81 UniRef50_A7GLY2 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_Q026B5 Two component heavy metal response transcription... 302 7e-81 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 302 9e-81 UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostri... 301 1e-80 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 301 1e-80 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 301 1e-80 UniRef50_D1B7S7 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 301 2e-80 UniRef50_C0WE14 Two-component system transcriptional regulator n... 301 2e-80 UniRef50_C4RGF6 Two-component system response regulator receiver... 301 2e-80 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 300 2e-80 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 300 2e-80 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 300 2e-80 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 300 2e-80 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 300 3e-80 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 300 3e-80 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 300 3e-80 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 300 3e-80 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 299 4e-80 Sequences not found previously or not previously below threshold: >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 350 bits (899), Expect = 3e-95, Method: Composition-based stats. Identities = 228/229 (99%), Positives = 228/229 (99%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVM GEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF Sbjct: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 347 bits (893), Expect = 1e-94, Method: Composition-based stats. Identities = 103/235 (43%), Positives = 150/235 (63%), Gaps = 11/235 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVV+DEAPIRE++ F L+++G++ A D +A+ + E DL+LLD MLP G+ Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + LK + T IP++MLTA+ EE DRV GLE GADDY+ KPFS +EL+AR+KAV+RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 123 I--------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 EE + + GL LD +S++ ++ + + P E++LL +T+P R + Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 SR++LL +WG Y + RTVDVHIR LR L+ ++TVRG GYRF+ R Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 2/228 (0%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++L+V+D+ + MV LE GF A D + + + + ++LD MLP G Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +P++MLTA+ EE+D++ GL+ GADDY+ KPFSP+ELVAR++A++RR Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 123 ISPMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++ ++E L++D S++V + +++ P EF+LL+ + +PERV++RE++L Sbjct: 124 DQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 +WG + RTVD H++R+RK LEP G D ++QTV G GY+F + Sbjct: 184 KIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVVED+A +RE++C+ L + G+ AED A+ P L++LD MLPG G Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ ES +P++MLTAR E D+V GLE GADDY++KPF +EL+AR+KA++RR Sbjct: 90 ELCRLIRTES---SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 123 ISPMAVEEV----IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + +++ L + H VM L+ P EF L F + + RV+SREQ Sbjct: 147 SQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQ 206 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL VWG + RTVDVHI LR+ +E R + TVRGTGY+F Sbjct: 207 LLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 6/232 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++ILVV+D+ I E+V + L + G+ ++A D + A+ + D+ ++D MLPG G Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ L+ R+ PVV L+A+GEE D+V GLE GADDYITKPFS +E++ARIKAV R Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 122 RIS-----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RI + I +GL +D + V ++ + + P EF+LL F + +V+SR Sbjct: 147 RIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSR 206 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + LL+ +WG + Y + RTVDVHIRRLR +E + + + TVRG GY+F Sbjct: 207 DVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRD 258 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 342 bits (880), Expect = 4e-93, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 7/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA +R+++ L++ +Q A + A++ + L+LLD M+P G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P++MLTAR +E DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 V++ + + L LD S V +P+ + EF LLH F+ + ++V+SREQLL+ Sbjct: 124 HRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +WG + RTVD HI+ LR L G +QTV G GY+F Sbjct: 184 QIWGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFE 226 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 143/228 (62%), Gaps = 4/228 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+A I+E+V + LE+ G+ + AE+ + A+ LN+ PDL+LLD MLP G+ Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 K ++ T +IP++ML+AR E DRV GLE GADDYITKPFSP+EL+ARIKA +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + L + P S+ V E + + EF+LLH FM P +V+SRE LL Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 VWG V + RTVDVHI LR L+ ++++VRG GYR + + Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGYRLAVNY 228 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 115/227 (50%), Positives = 155/227 (68%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +LVVEDE + ++ + LE+ G+ A D + A+ Q E PDL+++DWMLP S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L+ T ++P++MLTARGEE DRVRGL+TGADDY+ KPFS EL ARI+AV+ Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI P E+VIE +++D +HRV + + +GPTEF+LL + M HP RV+SREQLL Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VWG++VYVE RTVDVH+ RLRKAL ++TVR GY F Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 340 bits (873), Expect = 2e-92, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 131/232 (56%), Gaps = 9/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL++ED I ++ LE + D ++ DLI+LD MLP Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+Q +HL+ +++ P++MLTA+ E DRV GLETGADDY+TKPFS +EL AR+KA + Sbjct: 61 GLQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHL 118 Query: 121 RRISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR ++ + L +D T R+ G++ + + EF LL + +HP +V+ Sbjct: 119 RRTDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 SRE+LL+ VWG + TV+ HI RLR LE + + V TV G GY+F Sbjct: 179 SREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ IL+V+DE IR ++ LE+ F+ EA + A E ILLD MLP Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ L+ + P++MLTA+GEE +RV G E+GADDYI KPFSP+E+V R+KA++ Sbjct: 61 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 RRISPMAVE-------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR VE +VIE + L +D +HRV+A + + + P E++LL + P +V Sbjct: 118 RRTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRFSTR 228 + REQLL VW Y + RTVD H++RLR+ L + M+QTV G GY+F + Sbjct: 178 FDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 140/229 (61%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +RIL V+D+ I +++ L + GF+ + A + A+ + + PDL++LD M+PG Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + LK + R++P+++L+AR EE DRV G G DDY TKPFSP EL R+KAV+ Sbjct: 61 GFETYQKLKAQ---REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVL 117 Query: 121 RRISPMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+ V E +++ L+LD T V +E+ P +F+LL ++P RV+++ Sbjct: 118 RRLGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL+ +W ++ Y +D TV VHIRRLR+ +E + ++TV G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 339 bits (871), Expect = 4e-92, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 141/229 (61%), Gaps = 6/229 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 RRIL+VEDE IR+ V LE+ + D A+ + ++ DL++LD MLP G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ S D+P++MLTA+GE EDR+ GLE GADDY+ KPFSP+ELVAR++A++R Sbjct: 68 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 RISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R+ + EV+E L++D + H+V+ G + +++ +EFKLL +P RVYSR +L Sbjct: 125 RVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + V G + +RT+D H++ LR + + + + TV G GYRF Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFED 233 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 142/233 (60%), Gaps = 11/233 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R+L+ +DE IR+++ LE+ + A D + A+ +L++LD M+P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI+ + L+ +IP++MLTA+ +E D++ GL GADDYITKPFS E++ARIKA+ Sbjct: 61 DGIEVCRRLRNN---TNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKAL 117 Query: 120 MRR------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 MRR + + ++ +GL++D + + V G++ + + E +LL FF ++PE+V Sbjct: 118 MRRFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 +++ QL +VW +N +D TV VHIR+LRK +E + + +QTV G GY+F Sbjct: 178 FTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 133/229 (58%), Gaps = 7/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVV+DE + + + LEQ GFQ A D A+++ DLI+LD MLPG G+ Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ M P++MLTA+ ++ D++ GLE GADDYITKPF+ +EL+ARI+AV+RR Sbjct: 62 TICREVRAAGM---TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRR 118 Query: 123 ISPMAVEEV---IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + ++ + + L L P R PLE+ E+ LL HP VY+R++L Sbjct: 119 AEAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQEL 178 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ VWG + ++RTVDVH+RR+R+ LE R ++T G GY Sbjct: 179 LDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 140/231 (60%), Gaps = 6/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+IL+V+DE I MV L + G++ + A + A+N + PDLI+LDWM+P S Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ ++ ++++S IP++MLTA+ EE D++ G E G DDY+ KPFS +EL ARIK ++ Sbjct: 61 GIEVLREIRKKS---QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTIL 117 Query: 121 RR--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +R + E V+ L+L P V +PL++ PTEFKLL F+ +P + YSR + Sbjct: 118 KRLEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 LL + G +RT+D HI LRK +E + +QTV G GY+ R Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 14/237 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++IL+V+D+A I E++ L + F D + A+ Q E P+LILLD MLPG G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + +++ S IP++ML+A+GE D+V GLE GADDY+ KPF KELVAR+KAV+R Sbjct: 64 YEVCREVRKTST---IPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 122 RISPMAV----------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 R+ P + + L ++ +++ V + +EM P E +L +F +HP Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPN 180 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +V++REQLL+H+WG + RTVDVHI+RLR+ ++ R+ TV G GY+F + Sbjct: 181 QVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVK 236 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R+LVV+DE I + + F L Q+ + A D + A+ + D+ILLD MLP Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ S ++P++MLTA+G++ D++ GL+ GADDYITKPF+ E+ AR+KA++ Sbjct: 70 GLSVCQQIREFS---NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAIL 126 Query: 121 RR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR VI+ + +D S + ++ + + EF LL +P +VYSR Sbjct: 127 RRNSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSR 186 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + LL VWG + + RTVDVH+RRLR+ +E + V T G GY F+ Sbjct: 187 DNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 144/230 (62%), Gaps = 10/230 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MAR+++VV+DE PI +++ F L++ G+ A D + AV+ + E PD++LLD MLPG Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++++ ++P++MLTA+ E D+V GLE GADDY+TKPFS +EL+AR+KA + Sbjct: 61 GMEVCREVRKK---YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 RRISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR ++ I ++ + + P ++ + E +E+ EF+L H+ H +V Sbjct: 118 RRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGY 223 +RE LL VWG + + + RTVDV IRRLR+ +E H + T RG GY Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 141/233 (60%), Gaps = 12/233 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVV+DEA IR ++ LE+ + EAE+ D A+ + E DLILLD M+PG GI+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ + + P++MLTA+GEE +RV+G E G DDYI KPFSP+E+V R+KA++RR Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 124 SPM-------AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 S + V+ LS+D +HRV A + + P E++LL+F P++VY R Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP--GGHDRMVQTVRGTGYRFST 227 E+LL VW + + RTVD H++RLR+ L + + TV G GY+F Sbjct: 185 EKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +IL+V+DE IRE++ L+ G+ EA D +A++ L+ DL++LD M+P Sbjct: 72 MA-KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ ++ ++ + + PV++LTARGEE D++ GLE GADDY+ KPFSP+ELVAR+KAV+ Sbjct: 131 GMTCLREMRARHI--NTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVL 188 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R A + + L++D SH V E + + P EF LL F ++ SRE+ Sbjct: 189 NRTMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREK 248 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +L VW + + EDRTVD H++ LR L + TV G GY+F Sbjct: 249 ILQKVWNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFDP 295 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 14/236 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE---------PWPDLILL 52 A RILVVEDEA IR+MV VL+Q GF A D +A+N PDL++L Sbjct: 23 ASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVL 82 Query: 53 DWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112 D MLP +G+ F + L+R+ +T +P++ML+A+ E DRV GLE GADDY+TKPF +EL Sbjct: 83 DLMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 113 VARIKAVMRRISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHP 170 VAR +A++RR E V+ +GL L P RV+ + L + P EF+LL FM HP Sbjct: 141 VARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 171 ERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 RV+SR+QLL +WG + + +T+DVHIR LR+ +E + + TVRG GYR Sbjct: 201 RRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 10/232 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VEDE IRE+ LE+ ++ A + + PDLI+LD M+P G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++++S ++P++MLTA+GEE DR+ GL GADDY+TKPFSP+ELV R++ ++RR Sbjct: 62 ELCGEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 118 Query: 123 ------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + ++ EVIE L + P + V+ E +E+ EF++L+ HP++V+SR Sbjct: 119 GNQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 QLL +W TV V + RLR+ LE + + TV G GYRF Sbjct: 179 SQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEP 230 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 138/228 (60%), Gaps = 8/228 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++LVV+D+ I +++ LE+ G+ + A D AV++ + PD++LLD MLP G Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++R T D+P++MLTAR +E DR+ GLE GADDY+ KPFSPKE++AR++A+ RR Sbjct: 61 GVCKEIRR---TSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR 117 Query: 123 ISPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + P + E ++++ LD S + P+E+ PTE+KLL F+ HP +V+SR Q Sbjct: 118 LQPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 L+ V +RTVD HI+ LRK L ++T+ G GY+ Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + +L+V+DE +R +V LE F +EAE+ + A+ L D+IL+D M+P G Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ +S D+P++ LTARG+E D+V+GL+ G DDYI KPFSP EL+ARI+A+MR Sbjct: 63 FTLCARIREQS---DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMR 119 Query: 122 R-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R E + L +D +V +P+ + EF LL F H +V+SRE LL Sbjct: 120 RAYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + RTVD HI+ LR L+ +QTV G GY+F Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQASD--FIQTVWGIGYKFEV 224 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++ILVV+DE I ++ F L+ G+ D ++ L PDLI+LD MLP Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ + L+++S +P+VMLTA + D++ GL+ GADDY+TKPFSP+EL++RI+A+ Sbjct: 61 GIQVCRELRKQS--NAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIF 118 Query: 121 RRIS---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RRI A ++ L++ V+ +E+ P EF+LL F H +V SR+ Sbjct: 119 RRIQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 QLL+ VW + + R VDVHI LR +E + TVR GY+ Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 135/226 (59%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I + +L + G++ A D A+N+ PDL+LLD MLP G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+ EE D+V GL+ GADDYITKPF KEL+ARI+AV+RR Sbjct: 62 EVCKEIRKIS---NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 Query: 123 ISPM-AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + + I +D V + + + EF++L ++ P RV++R+ ++ Sbjct: 119 YQSDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIK 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 H+WG N + E R VDV+IR LR+ +E H + + TVR GY+F Sbjct: 179 HIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 142/243 (58%), Gaps = 20/243 (8%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+VEDE I ++V L + G++ D A N+ E DLI+LD MLPG G+ Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR- 121 + + ++ S IPV+MLTA+ +E +++ GLE GADDY+TKPFSP+EL+AR+KA +R Sbjct: 62 EVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 122 RI-----------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 R E+V + LS+ P +R + L++ P EF+LL+ Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGY 223 +T+ +V +RE+LL +WG + + RTVDVHIR LR+ + E GG +V+TVRG GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 224 RFS 226 R Sbjct: 241 RLK 243 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 I+VV+DE IR+++C LE G++ ++AE+ A+ L + DLI+LD M+P G Sbjct: 3 KNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ ++ E +++P++ML+A+ E+ D++ GL GADDY+TKPF+P EL+AR+K+ +R Sbjct: 63 IEACTKIREE---KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119 Query: 122 RISPMA------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R +++IE+ L+++ +H V GE+ + + P EF +L + V+S Sbjct: 120 RYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 E++ VW + D TV VHIR+LR+ +E + V+TV G GY+ Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 LVVED++ I E+V VL F A D + +LI+LD MLP G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISP 125 + L+ + TR P++MLTA+ EE D+V GL+ GADDY+TKPF P+E +AR+ A++RR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 126 -MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++ + L++ P S++ ++ +++ P EF+LL + R REQLL VW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 185 GTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFSTR 228 G RT+D HI+RLR+ + VQTV G GY+ + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 102/233 (43%), Positives = 147/233 (63%), Gaps = 8/233 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGG 59 MA R+L+VED+ +R++V L + G + D ++A+ L++ P DL+LLD MLPG Sbjct: 1 MA-RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGM 59 Query: 60 SGIQFIKHLKR-ESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 GI + L+ S R +PVVMLTAR +E V GLE GADDYITKPFSP++L +R++A Sbjct: 60 DGISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRA 119 Query: 119 VMRR----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 +RR + +E GL +D RV A E +E+ EF++L ++P RVY Sbjct: 120 QLRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVY 179 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 SREQ+++H+WG + E R+ DVHI+ LR+ +EP + R +QTVRG GYRF+ Sbjct: 180 SREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 139/226 (61%), Positives = 178/226 (78%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE PIR+M+ LE + +EA D A + + + PDLILLDWMLPG SGI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + LKR+ +T +IP++MLTA+GEE+++V+GLE GADDYITKPFSP+ELVAR+KAV+RR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 M + E I+++GL LDP SHRV + P++MGPTE++LL FF+TH ERVY+R QLL+H Sbjct: 124 TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDH 183 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG NVYVE+RTVDVHIRRLRKAL GHDR +QTVRG GYRFS + Sbjct: 184 VWGGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNK 229 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 140/232 (60%), Gaps = 7/232 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 IL+VED+ I +++ LE+ F + D ++ + E PDLI+LD MLP G+ Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++++ ++D ++MLTA+GEE DR+ GL TGADDY+ KPFSP+ELVAR++A++RR Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMA----GEEPLEMGPTEFKLLHFFMTHPERVYSR 176 V ++ +D H+ +E LE+ EF LL FM++P RV++R Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 QL+ +WG + + ++R VD HIRRLRK +EP + ++TV G GY+F Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFED 243 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +R+L+V+DE PI ++ + L + GF D +A+ D I+LD MLP Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ K L+ + P++M++A+ +E D+V LE GADDY+TKPFSP+EL+AR+KA++ Sbjct: 68 GIEVCKRLRSKG--SKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 125 Query: 121 RRIS-------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR E M L L P H V +E L + P E++LL + M HP Sbjct: 126 RRTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMT 185 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 +RE+LL +WG + E R VDVHI +LR+ +E + +QT+RG GY+F Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFK 239 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 142/238 (59%), Gaps = 15/238 (6%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M +ILVV+DE I ++ + L+Q G++ V A D A++ ILLD MLP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G++ K L++E + P++++TA+ +E D+V GLE GADDYITKPFSP+E++ARIKAV Sbjct: 61 DGMEVTKKLRQEKV--QTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAV 118 Query: 120 MRRISPM-----------AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMT 168 +RR +P A V+ + L +D +RV + + + P EF+LL +F+ Sbjct: 119 IRRTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVE 178 Query: 169 HPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 RV SR+ +LNHVWG + E R VD+HI LR+ +E R+++TVRG GY F Sbjct: 179 REGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ILVV+DE PI +++ L+ GF ++ + A + +L +LD MLP Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ PV+MLTA+ EE D++ GL GADDYITKPF P ELVAR+KA + Sbjct: 61 GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117 Query: 121 RR------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + P E +I GL LD +H E+ + + P EF +L ++ RV Sbjct: 118 RRFTKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVV 177 Query: 175 SREQLLNHVWGTNVYVED-RTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 S E+L + VWG + TV VHIR LR+ + H + ++TV G GY+ Sbjct: 178 SSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 139/226 (61%), Gaps = 6/226 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+D+ + E+V E+ GF+ V +D D + + PD+++LD MLPG G+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ R IP++MLTA+GEE DRV GLE GADDY+ KPFSP+ELVARIKAV+RR Sbjct: 66 LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 ++ GL + +V+ E+ P EF LL+ +P+RV++RE+LL Sbjct: 123 QAADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLG 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + + + RTVDVHIRRLR L H +QTV G GY+F+ Sbjct: 183 AVWGYDYFGDQRTVDVHIRRLRTKLASLPH-EYLQTVWGVGYKFTP 227 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ILVVEDE + + + L+ G+ D S + E PDLILLDWMLPG SG Sbjct: 3 NPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K L++ +P+++LTA+ + DRV GL+ GADDYI KPF+ +EL+AR++A +R Sbjct: 63 LDICKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + ++++ LSL+ + V G +E+ EF LL + M+HP++V SR+Q+L Sbjct: 121 R-NHEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILE 179 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + + ++V++R LR LE R++QTVRG GY Sbjct: 180 RVWGYDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 329 bits (845), Expect = 4e-89, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + +L+VEDE IR +V ++ GF +EA D + A+ +E DL +LD M+P Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ ++++ S + P+++LTA+ +EED++ G E GADDY+TKPFSPK L+A+ KA++ Sbjct: 61 GLAVCRNIREVS---NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + +++ GL+++ SH V E L + P E+ LL + ++ SR+++L Sbjct: 118 RRTGTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 ++VWG + + + RTVD +I+RLR+ L + + TVRG+GY+F + Sbjct: 178 DNVWGYDYFGDIRTVDTNIKRLREKLLDKAN--YIATVRGSGYKFEVK 223 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 131/228 (57%), Gaps = 1/228 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + + VVED+A I +V + LE GF + + + + P+L LLD M+PG Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++ PV+ LTA+ E D++ GL+ GADDYI KPFSP+EL+ARIKAV+ Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR V+ + +D + + + TEF+LL + HP RV++R+QLL Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 + VW YV R+VDV++RR+R+ +E R ++TVRG GYRF Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ARRILV +D+ +++ L GF ++A D A++ PDL++LD M+P G Sbjct: 4 ARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ S +P+++LTARG+ D+V G GADDY+TKPF ELV R+ A++R Sbjct: 64 FAVCGRIRAASA---VPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILR 120 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R+ + + L ++ ++ V G+ E+ P EF LL +HP ++RE LL Sbjct: 121 RMPTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLA 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VW + + TV V IRRLR+ +E R ++TV G GY+F Sbjct: 181 RVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 9/235 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +++L++ED+ I +V L G A D S + D+I+LD MLP G Sbjct: 3 QKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L++ + +P++MLT+R EE+D+V L GADDYITKPFS +EL AR+ A +R Sbjct: 63 LEVCQRLRKNHIL--VPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 122 RISPMAVEEVIE------MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R P I GL LD +H+V + +E+ EF LL FM +P R YS Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTRF 229 R +LL+ VWG + + TV+ HI RLR +E + + TV G GY+F+ + Sbjct: 181 RTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQL 235 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 141/227 (62%), Positives = 177/227 (77%), Gaps = 1/227 (0%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + IL+V+DEAPIREM+ LE G++ +EAE+ A + + PDLILLDWMLPG SG Sbjct: 3 GKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + LKR+ +T DIP++MLTA+GEE+++++GLE GADDYITKPFSP+ELVAR+KAV+R Sbjct: 63 IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R P E IE+ GL LDP SHRV +P EMGPTE++LL FFMTH ER Y+R QLL+ Sbjct: 123 RTGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLD 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG NVYVE+RTVDVHIRRLRKAL ++ +VQTVRGTGYRFST+ Sbjct: 183 QVWGGNVYVEERTVDVHIRRLRKALGEV-YENLVQTVRGTGYRFSTK 228 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 328 bits (843), Expect = 7e-89, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 132/229 (57%), Gaps = 9/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +IL++ED + M + GF+ D + E DLI+LD MLP G+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ S +P++MLTA+ E D+V G E GADDY+TKPFSP LVARIKAV+RR Sbjct: 61 TICRKIRETST---VPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 Query: 123 ISPMA----VEEVIEMQGLSLDPTSHRVMAGEEPLE-MGPTEFKLLHFFMTHPERVYSRE 177 E++IE + +++ + V+ EP+E + P EF LL++ + +P +V+SRE Sbjct: 118 YKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSRE 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 QLL VWG Y ++RTVDVHI+RLRK L + TV G GY+F Sbjct: 178 QLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFD 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 139/226 (61%), Gaps = 7/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILV +DE +R+++ LE+ G++ V A + A+ +L E L+LLD M+P G+ Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ S ++P+++LTAR EE DR+ GL+ GADDYITKPFSP+EL+ARI+A +RR Sbjct: 67 ACMRIREFS---NVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + E+ ++ LS+D V + + + EF LL+ F+T+ E+V+SREQLL+ Sbjct: 124 HSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +WGT + RTVD HI+ LR L G +QTV G GY+F Sbjct: 184 QIWGTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEA 227 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 135/226 (59%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILVV+DEA IR + LE G++ + A + + PDLI+LD MLPG Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ L+ +S D+ ++MLTAR +E DRV GL GADDY+TKPFSP+ELVAR++A++ Sbjct: 61 GMEITARLREKS---DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117 Query: 121 RRISPMA-VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR V+ + +DP + A + LE+ PTEF LL + RV SRE L Sbjct: 118 RRRRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + VWG + Y DR VDV++ ++R+ +E + +++T RG GYRF Sbjct: 178 IEKVWGADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+ I +++ L G D D + + DLI+LD MLPG G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L++E P++M+TA+ EE D+V GLE GADDYITKPFS +E++AR+KA+ RR Sbjct: 67 DICRRLRQEKCP--TPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR 124 Query: 123 ------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 A + IE+ + ++P +V E +++ EF+LL F HP R +SR Sbjct: 125 VEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 ++LL+ VWG TV+ HI RLR +EP R V+TV G GYRF+ R Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ILVV+DE +R+M+ LEQ GF VEA D A+ PDL++LD M+P Sbjct: 1 MS-TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMG 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G +F L+ + PV++LTA+ E+ D++ GLE GADDY+TKPF+ +EL+ARI+AV+ Sbjct: 60 GYEF---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVL 116 Query: 121 RRISPMA-VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR +V+ + LD T V G +++ P+EF +L M P +V+SR L Sbjct: 117 RRTQQTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDL 176 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L+ V G +RT+DVHIR LR +E H + ++TV G GYRF+ Sbjct: 177 LDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 139/232 (59%), Gaps = 10/232 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++LV +D+ +RE++ E+ + + A D A+ + + PD+++LD M+P G Sbjct: 32 TMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDG 91 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++++ D P++MLTA+ EE DRV GLE GADDY+TKPFSP+E+VARI+A+MR Sbjct: 92 FEACREIRKK---WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMR 148 Query: 122 RISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R+ P E + L++D V+ E + P EF LL + P V+S Sbjct: 149 RLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 REQLL VWG + + + RT+DVHI+++R+ L+ +D +QTV G GY+F Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD-CIQTVWGIGYKFGV 259 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 143/226 (63%), Gaps = 4/226 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVVEDEA IR + LE G++ EAE + A+ L E PDL++LD MLPG G++ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +H++ D +++LTA+G++ D++ GLE GADDY+ KPF+P EL+ARIKA++RR Sbjct: 67 VCQHIRE--TMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR 124 Query: 124 SPMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 L LD +++++ + +E+ PTE+ LL FM +P + RE++LN Sbjct: 125 DRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNG 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +WG + + + +T+DVHIRRLR+ +E R ++T+ G+GYR+ Sbjct: 185 IWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQP 230 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 136/245 (55%), Gaps = 20/245 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I+V +DE I ++ LE+ G + AE+ + A+ E PDL++LD M+P Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ +++ T D P++MLTARGEE DR+ GL GADDY+TKPFSP+ELV R+ ++ Sbjct: 61 GLEVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNIL 117 Query: 121 RRI----------------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164 RR S A + I ++GLS+ P RV E +E+ EF LLH Sbjct: 118 RRAGWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLH 177 Query: 165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGY 223 +P +V+SR QLLN VW + TV VH+RRLR+ +EP ++TV G GY Sbjct: 178 LLAMYPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGY 237 Query: 224 RFSTR 228 + + Sbjct: 238 KLDNK 242 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 139/233 (59%), Gaps = 7/233 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M++ ILVV+DE I ++ + LEQ +Q V ++ AV + + D +++D MLP Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ K +++ IP++MLTA+ + D++ GLE GADDYITKPFSP+EL++RIK ++ Sbjct: 61 GIEATKQIRKF--DEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVIL 118 Query: 121 RRISPM----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR ++ ++ + +++D V E +++ P EFKLL + + +V SR Sbjct: 119 RRTDRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 +Q+L VWG + R VD+HI LR LE H ++++T+RG GY F ++ Sbjct: 179 DQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSK 231 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 13/237 (5%) Query: 1 MARR-ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R IL+ ED+ I E++ L + G+Q ++A D AV + DL++LD M+P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + ++ ++ + +P++ L+A+ + D++ GL GADDY+TKPF+P EL+AR+ A Sbjct: 63 DGYEVVRVIREQQ--YRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120 Query: 120 MRR--------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 +RR +P I GL++D V + +++ P EF +L+ +HP+ Sbjct: 121 LRRFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPK 180 Query: 172 RVYSREQLLNHVWGTNVY-VEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +V+S E + VWG Y TV VHIR LRK L H + ++TV G GY F Sbjct: 181 KVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + E+V L GF A D +A+ PDL++LD MLPG GI+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ +PV+MLTAR +E DR+ GLE GADDY+TKPFSP+EL R+++V+RR Sbjct: 117 VFRRLRAHRP---VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA 173 Query: 124 S---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + P A V+ L +D + PL + EF LL F + P R ++R +LL Sbjct: 174 NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 HVWG + + TV VHIRRLR+ +E RM+ TV G GYR+ Sbjct: 234 EHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 118/231 (51%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RIL+VEDE I E++ L G++ +A D A + + P++I+LDWMLPG S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+QF K L+ T+ +P++MLTA+ EE D+V GL++GADDY+TKPFSPKELVAR++A++ Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVM-----AGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR P+ + + L LDP+SHRV+ A + + +GPTEF+LL FFM +PERV+S Sbjct: 121 RRQMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHS 180 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 R LL+ VWG+ VY+E+RTVDVHI+RLR AL P DR ++TVRG+GYR + Sbjct: 181 RASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRIT 231 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 139/229 (60%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +ILVV+DE IR+++ LE++ F A D A++++NE PDLI+LD MLP S Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++ + P++MLTA+G EED+V G GADDY+ KPFS +EL+ARIKA++ Sbjct: 61 GEEVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAIL 117 Query: 121 RRISPMAVEEVI---EMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR + A + I + L + P +V+ ++ TEF +L + +P +V++RE Sbjct: 118 RRSNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 QL V G DRT+D HI+ +RK L + +++ TV G GY+F Sbjct: 178 QLAKKVMGLEYKGYDRTIDAHIKNIRKKLNLEKN-QLIITVYGVGYKFE 225 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNG-FQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R I+++ED+ I + + + LEQ G F ++ + + E P+LILLD LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 +G + + L+RE T +P++MLTAR +E D++ GL GADDYITKPFS +EL+ARI AV Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V + L +D V + + + EF LL RV +RE L Sbjct: 121 LRRTEGTPSS-VYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYL 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ VWG + E RT+DVHIRR+R+ L G ++T G GYRF Sbjct: 180 LDRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+VED++ + E + + E+ GFQ A D + + PDLI+LD MLPG G Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR-- 121 + + +P+V+LTA +E R+ GLE GA DY+ KPFS EL+AR++A++R Sbjct: 63 VC---RAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWN 119 Query: 122 -RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R V+ + + LD S RV + +E+ EF LL M + SR+ LL Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG++ +RT+DVH+R LR+ LEP + +++TVRG GY F Sbjct: 180 ERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQD 227 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 138/234 (58%), Gaps = 15/234 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL----------NEPWPDLILLDW 54 ILV+EDE IRE V L++ G+ + A D A+N + + LI+LD Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 55 MLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVA 114 MLPG +G+ + ++R+ T +P++M++A+G E DRV GLE GADDY+ KPF +E++A Sbjct: 84 MLPGINGLDLCRLIRRQGCT--VPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 115 RIKAVMRRISPMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 R +A++RR V+ + L L P R E L + P E+KLL FM HP R Sbjct: 142 RCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRR 201 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 V+ REQLL+ VWG + + +TVDVHIR LR+ +E H + + TVRG GYRF Sbjct: 202 VWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 136/237 (57%), Gaps = 14/237 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +++LVV+DE I ++ + L+Q F A + A++ + D++LLD MLP SG Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +K ++ + D PV++LTA+ E D+V GLE GADDY+ KPFSP+E++ARI AV+RR Sbjct: 62 EVLKRIRMDR--NDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119 Query: 123 ISPMAVE-----------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 ++ ++D ++V ++ L++ P EF+L+ + + H Sbjct: 120 YEKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +V SR+QLL VWG + + R VD+ I LR+ +E + ++T+RG GY FST Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFST 236 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 134/234 (57%), Gaps = 11/234 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M R IL+ +DEA I +++ LE+ G+ V+A D + A++ + DL++LD M+P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + + ++ + +P++ L+A+ + D+V GL GADDY+TKPF+P ELVAR+ A Sbjct: 61 DGYEVTRQIRAKH---HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 MRRI------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 +RR + +E+ G+ +DP V E +E+ P EF +L+ +HP++V Sbjct: 118 LRRFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 Y+ E + VW + + TV VHIR LRK L +++++TV G GY F+ Sbjct: 178 YNVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 136/229 (59%), Gaps = 5/229 (2%) Query: 1 MAR--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R ++L++ED+A I E++ +++ G+ + A D + + PD I+LD MLP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 +G + K ++ E R +P++MLT +GE D ++GL GADDYI KPF P EL+AR+K Sbjct: 61 LNGWEVCKTIRME--DRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKT 118 Query: 119 VMRRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 V+RR + ++ ++ + + +RV+ E ++M P E +L ++ +P++V +R+ Sbjct: 119 VLRRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQ 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 QLL+ VWG + RTVDVHI+R+R L + T+RG GYRF Sbjct: 179 QLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFE 227 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 117/232 (50%), Positives = 166/232 (71%), Gaps = 5/232 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + IL+VEDE I E++ L+ G P+ A + A+ + + PD++L+DWMLPG SG Sbjct: 4 SSNILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ ++ T+ IP++MLTAR EE D+V+GL+ GADDYITKPFSPKEL+ARI+AV+R Sbjct: 64 VALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLR 123 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGE-----EPLEMGPTEFKLLHFFMTHPERVYSR 176 R +P E +++ GLS+DP+S R + + + +GPTEFKLLH+ M HPERV+SR Sbjct: 124 RRAPQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSR 183 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 LL+ VWG +V++E+RTVDVHI+RLR+AL P MV+TVRG GYRF+ + Sbjct: 184 GALLDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRFTAQ 235 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+VEDE IR+M+ L Q GF+ A D A+ + PDLI+LD MLPG S Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +K ++++ + P+++LTAR +E D++ GLE GADDYITKPFSP+EL RIKAV+ Sbjct: 61 GWEVMKKIRQK---NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + + LS++P + G+ L + PTEFK+L +P +V+SR +L Sbjct: 118 RRSRPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRF 225 V+G +RT+D HI LR +E G + ++TV G GY+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +ILV+ED+ I ++ L+ GF A D +N D+ILLD MLP S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K ++ T +P++MLTA+ E D+V G + GADDY+TKPFS +EL+ARIKA++ Sbjct: 61 GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117 Query: 121 RRISPMAVEE-VIEMQGLSLDPTSHRVMAG--EEPLEMGPTEFKLLHFFMTHPERVYSRE 177 RR V + + E + L+++ +++ V + +++ EF+LL F + + V SR+ Sbjct: 118 RRTKKSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++L VWG + D +D++I+ LR ++ + +QTVRG G+ F Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 133/226 (58%), Gaps = 5/226 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I V+ED+ I E++ + ++ GF + A + + PD+++LD M+P G++F Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K ++ + IP++MLTA+ E D++ GLE GADDY+TKPFS +EL+AR+KA++RR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 125 P---MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + + L + P V +P+ + T+FKLL + +V SR+ ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW + V DRT+DVHI++LR+ L+ G+ ++T+RG GY++ Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWEC 227 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 13/236 (5%) Query: 1 MAR--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R ++L+V+DE I +V VL++ ++ + A++ + A+ + PDL++LD MLP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G + + ++ T +P++ML+A+GE D+ G GADDY+ KPFSP EL R+KA Sbjct: 61 IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117 Query: 119 VMRRI-------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 ++RR S + I L ++ SH V +P+ + P EF+LL F HP+ Sbjct: 118 LLRRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPD 177 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +V++REQL H+W + T+ V IR+LR+ +E + +QTV G GY+FS Sbjct: 178 QVFTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 144/228 (63%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA+ ILV++DEA +RE++ L+ GF EA++ + + PDLILLD M+P Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ F ++ + + P+++LTA+ E+ D++ GLE GADDYITKPF+ +E++AR++AV+ Sbjct: 61 GLDF---MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + +V+ + + L+ ++ +M GE+ +++ P+EF++L M P V+SR L Sbjct: 118 RRSYKAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L+ G +RT+DVHIR LR +EP + R ++TV G GYRF+ Sbjct: 178 LDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +I+V+EDE I ++ F L+ G+ A D + + PDL+LLD MLPG S Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K +K IP++MLTARG+E DR+ G E GADDY+ KPFSP+EL+ RIK V+ Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 121 RR-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR ++ + + GL+ D ++ ++ + PTEF L F+ + +V SREQL Sbjct: 121 RRNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 L++ WG RTVD H+RRLRK L + ++TVRG GYR Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLG--PYADWLETVRGIGYRMK 225 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 108/227 (47%), Positives = 150/227 (66%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +I VVEDE + ++ + LE GF+ D A +L E PDL++LDWMLPG S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + L++ T +P++MLTARGEE +RVRGL TGADDY+ KPFS EL+AR+KA++ Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR P + ++ + LD +HRV + +GPTEF+LL F M+ P RV+SR QLL Sbjct: 121 RRAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VWG ++YV++RTVDVH+ RLRKAL +++TVRG GY + Sbjct: 181 DGVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 100/226 (44%), Positives = 146/226 (64%), Gaps = 5/226 (2%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 L+V+D+A IRE+ LE GF +EA D +A+ QL + D+++LD MLP G Q + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI-- 123 ++R +PV+MLTA G+EEDR+ GL+ GADDY+ KPFSP+ELV+R++AV+RR Sbjct: 62 AEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 +P +++ GL +D RV AG++ L + P EF LL+F +HP++V+SRE LL+ V Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFSTR 228 WG + + RTVDVH+ RLR+ L ++TV G GYRF + Sbjct: 180 WGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVK 225 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 8/230 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED+ I +++ L + G++ V A D + + + P L+L+D MLP Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++S ++P+++++AR + D++ L GADDYITKPFSP ELVAR+K+ + Sbjct: 72 GFEVCRQVRQQS---EVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 121 RRISP----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR E+V+ GL+++ V +PL + EF+LL P +V+S+ Sbjct: 129 RRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 EQL N VW + + RTV VHI+ +R+ L G H R + TV G GY+F Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V L+ F + D + A N + + DL LLD M+P S Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K ++ P++MLTA+G E D+++GL GADDYITKPF P E+VAR+KA + Sbjct: 129 GLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 RRISP-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR + EE++E +GL L+ +H E L + PTEF +L V S Sbjct: 186 RRYKRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVS 245 Query: 176 REQLLNHVWGTNVYV-EDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 E+L + +W Y + T+ VHIR LR+ +E + + ++TV G GY+ Sbjct: 246 AEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D SA+ + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR + Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 125 PMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 V+E + +D H V EP+ + EF LL + M + RV +R QL+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VWG + + +T+DVH++RLR +E + + TVRG GY+ Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 137/230 (59%), Gaps = 7/230 (3%) Query: 1 MARR--ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M ++ IL+VEDE I E + LE GF+ + D A + + PDL+LLD MLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G++ K L+ S IP++MLTAR EE DR+ GLE GADDYI KPFSP+E+VAR+KA Sbjct: 61 KDGMEVCKELRSFS---QIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKA 117 Query: 119 VMRRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 V+RR + P + I + LD S V G L++ P+EF +L M+ P RV+SR Sbjct: 118 VLRRSNTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRN 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 +LL+ G+ DRT+D HIR LRK ++ + ++ G GY+F+ Sbjct: 178 ELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+LV++D+ I M+ L G++ A D +N E P+L++LD MLPG Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++++ P+++L+AR E E +V+GL GADDY+ KPF+ +EL+AR++A++ Sbjct: 61 GWEICQRFRKDNF---TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + +VI+ L +D + V L + EF LL FM HP +V +REQ++ Sbjct: 118 RR--RITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQII 175 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + VWG + ++V+I LR+ +E G R++ TVRG GY + Sbjct: 176 DRVWGLDFTGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVLKEQ 222 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 135/241 (56%), Gaps = 17/241 (7%) Query: 1 MAR--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M + +L+VEDE IR M+ LEQ F VEAE+ A+ L + DL++LD M+PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G + ++ S ++P++ LTARGEE DRV G E GADDY+ KPFSP+ELV R+KA Sbjct: 61 LDGWTTCRKIREFS---EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKA 117 Query: 119 VMRRISPMAV----------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMT 168 ++RR S E+ + LSL P + + E L + P E+ LL + Sbjct: 118 LLRRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQ 177 Query: 169 HPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP--GGHDRMVQTVRGTGYRFS 226 + RV SR+ LL+ VWG + RTVD H+RRLR+ L V TVRG+GY+F Sbjct: 178 NAGRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 Query: 227 T 227 Sbjct: 238 V 238 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVED+ I E + LE G + A D A PDL++LDWMLPG G+ Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ PV+MLTAR EE+ RVR L GADDY+ KPFS KELVAR++A++RR Sbjct: 74 CERWRKGEYFA--PVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + GL +D + +V P+++ EF LL HP RVYSR++LL VW Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 G + RT+DVH+R+LR+ LEP V TV G GY+F+ Sbjct: 192 GYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 101/229 (44%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVN-QLNEPWPDLILLDWMLPGGS 60 + IL+VEDEA + + + L++ G++ A D +A+ EP PD ILLD MLP S Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + KHL+ + TRD+PV+M+TA+G E DRV G E GADDY+ KPFS +EL+ RI+A++ Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 121 RRISPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR A ++I L +D HRV E+ + + EF+LL+ F++ RV +R+ L Sbjct: 130 RRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDAL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 L+ VWG V RTVD H++RLR+ L G R V+T+RG GYRF R Sbjct: 190 LSDVWGIEADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRFRDR 236 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+V+DE I +++ L+ GF + A+ + D+ +LD MLP Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ + P++MLTA+ E+ D++ GL GADDYITKPF+P E+VAR+K + Sbjct: 61 GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 RRISPMAVE--------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 RR +++GL ++ +H+ + + + P EF +L + H + Sbjct: 118 RRYMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRFS 226 V E+L VWG + TV HI RLR+ + EP + + ++TV G GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 10/237 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQ--LNEPWPDLILLDWMLPG 58 M+++IL++ED+ + E++ L N ++ A ++ E DLI+LD MLP Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 GSGIQFIKHLK--RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 G+Q + ++ + S T +P+VMLTA+G+ DRV GLE GADDYI+KPF P+EL+ARI Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 117 KAVMRRISPM----AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 +AV+RR + + + LS+ P SH V ++P+ + +F+LLH+F TH + Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 173 VYSREQLLNHVWGTNVYVE-DRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 V +REQL + + DR +DVHI RLR +E + + TVRG GY+F+T Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+++DE I +++ LE+ G + A + + + E PDLI+LD M+P Sbjct: 1 MS-KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDID 58 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ T P+V L+A+ E DR++G G DDY+ KPFS KEL+ARI A + Sbjct: 59 GYEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHL 115 Query: 121 RRISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR ++ + +++D S VM P+ + EF +L HP +V+ Sbjct: 116 RREKRAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVF 175 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 S+EQ+ VWG + + TV HI+ +R +E ++TV G GY++ Sbjct: 176 SKEQIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 5/222 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+D+A + EM+ VL + G++P D + AV + PD++LLD MLPG +G+Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + ++ +S +P+VMLTA+G+ D V+GLE GADDY+TKPF P ELVAR++A +RR Sbjct: 77 ICQDIRTQST---VPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRG 133 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 E + + + +D +H+V P+ + P EF LL P +V++RE LL V Sbjct: 134 ETGQAEN-LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQV 192 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYR 224 WG + R V+VH++RLR +E +V TVRG GY+ Sbjct: 193 WGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +R+L++EDE I +++ L+ ++ + + A++ + D ++LD MLP SG Sbjct: 5 KKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K ++ +S +P++MLTA+ EE DR+ GL+ GADDY+TKPFSPKELVAR++A+MR Sbjct: 65 EEICKRIRLQS---QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMR 121 Query: 122 RISPMAVEE---VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R + ++ + L +D +E +E+ TEFKLL F+ + +V+SR++ Sbjct: 122 RTNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 L+ V G + DRT+DVHI+ LR +E + + + TV G GYRF Sbjct: 182 LVVKVLGYDYVGYDRTIDVHIKNLRHKIE-CEYYKYIVTVYGVGYRF 227 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+VED+A I +++ L ++ V + D + L + D ++LD MLPG G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + + +MTR P+++ +AR E R+ GLE GADDY+ KPFS ELVAR+KA++RR Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 123 ISPMAVEEVIEMQ-----GLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + +A + I+ GL++DP + L++ P EF LL+FF HP +V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 LLN VWG + TV+ HI RLR +E + TV G GY+ + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE +RE++ L +EA D +A+ + + PDL+LLD M+P G Q Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ ++ ES +PV+MLTARG DRV+GL GADDYI KPF +EL AR++AV+RR + Sbjct: 68 LQRIREESA---VPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSA 124 Query: 125 PMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V I L++ P + PL + P EF LL HP +V+SRE+LL+ + Sbjct: 125 GQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRI 184 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 WG + + RTVD HI+ LR L G ++ TV G GYRF+ Sbjct: 185 WGPDFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFA 225 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 145/232 (62%), Gaps = 6/232 (2%) Query: 1 MARR---ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP 57 M + +L++ED+ I E++ +E+ G+ A D ++ + E +PD I LD MLP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 G + + ++ ++ + IP++MLT +GE +D+++GL+ GADDY+ KPF P ELVAR+K Sbjct: 61 KIDGWELCQEIRWDN--KKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMK 118 Query: 118 AVMRRISP-MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 AVMRR ++V+ + GL +D ++ AG++ + M P E LL++ ++P +V++R Sbjct: 119 AVMRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 +QLL+ +WG + RT+DVHI+R+R+ L ++T+RG GY+F + Sbjct: 179 QQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEK 230 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW-PDLILLDWMLPGG 59 M ++LV+EDE +R+++ LE NG+Q + AE+ ++ NE +ILLD MLP Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG +K ++ T +PV+M+TARGEE D++ G E GADDY+ KPFSP+E+VAR+KA+ Sbjct: 61 SGWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAI 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + R + E QG+ +D S V + +E+ P EF LL + + +V SRE+ Sbjct: 118 LSRTYGSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKC 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 LN VWG + Y + RTVD HI++LR+ L +++TV G GY+ Sbjct: 178 LNEVWGYDFYGDLRTVDTHIKQLREKLGE--KRNLIKTVWGIGYKLE 222 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL++ED+ IR + L +G + +EA + + D++L+D MLP G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + L+R S D+P++M+TAR + D V GLE GADDY+TKPF KEL ARI+A++RR Sbjct: 79 ECCRRLRRSS---DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR 135 Query: 123 ISPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 EVI++Q L + P + V E L + TEF+LL + P+RVYSREQLL Sbjct: 136 SRSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLL 195 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG + + + R VDVH+RRLR +E H R++ TVRG GY+ Sbjct: 196 ERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 135/234 (57%), Gaps = 12/234 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+V+DEA IR+++ L G+ V A D + A+N ++ PD+++LD M+P G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++++S D+P++MLTA G+ DR+ GLE GADDY+ KPFSPKEL ARI+AV+R Sbjct: 74 YGVCQEIRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLR 130 Query: 122 RISPMA------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + A +I L++D ++ E + + EF LL ++ + +S Sbjct: 131 RTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 176 REQLLNHVWGT--NVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 R +L VWG +V+ R VDVHI RLR LE + ++ T RGTGY F Sbjct: 191 RADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 102/230 (44%), Positives = 135/230 (58%), Gaps = 4/230 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+ILV+EDEA I ++ Q F+ + ++ PDLI+LD MLPG Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + LK++ +T IPVV+LTA+ +E DR+ GLE GADDYI KPF+PKEL+ARIKA++ Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR P E G+ LD H AG+ L++ EF LL + + RV R+ Sbjct: 121 RRTEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQM 180 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 LL+ VWG + DRTVDVHIRRLRK L VQTV+ GY+F R Sbjct: 181 LLDLVWGADYEGTDRTVDVHIRRLRKKLGDY--QDRVQTVKQIGYKFMDR 228 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILVV+D+ + EM+ VL +GF+PV D A+ PDL+LLD MLPG Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI+ + ++ ES D+P+VMLTA+ + D VRGLE+GADDY+ KPF P ELVAR++A + Sbjct: 90 GIEVCRQIRGES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 146 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R E + + +++D H V G E + + P EF LL P +V++RE LL Sbjct: 147 -RPGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLL 205 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYR 224 VWG + R V+VH++RLR +E +V TVRG GY+ Sbjct: 206 EQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 R+LVVEDE I + LE+ GF D A+ + D +LD MLPG G Sbjct: 45 GMRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDG 104 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I ++ L+ + +P+++L+AR E D++ GL +GADDY+ KPFS ELVAR++A++R Sbjct: 105 ISVLRSLRERGI--SLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIR 162 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + + V ++ L+L+ + V G++ +E+ EF +L M P RV++R Q+ Sbjct: 163 RTAGIGLS-VYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCE 221 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + VDV+I++LRK ++ G +++QTVRG GY+ Sbjct: 222 RVWNYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 7/224 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RI +VEDE I + LE GF+ E+ A ++ + DL+LLD MLPG G+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++ S +P++MLTA+ E ED+V GL+ GADDY+TKPF+ +EL+ARI+ +R+ Sbjct: 66 ICKRVREVS---SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKH 122 Query: 124 ----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + +EE ++++ L + P + V E + + E+ LL + M + V +R+Q+ Sbjct: 123 VPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQI 182 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 L VWG + + VDV+IR LR L+ H++ + TVRG GY Sbjct: 183 LEKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+ I M+ L + G+ +A AV + ++++D M+P GI+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 ++ ++ +S +P+++L+A+GE+ D++ GL GADDYI KPFS EL+AR+K +RR Sbjct: 65 SMRRIREKS---KVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 Query: 123 -----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++ E + D ++ V G + L + E K+L F +P RV+++ Sbjct: 122 IYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKV 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 Q+ + VWG + TV VH+RRLR +E + ++++TV G GY+ + Sbjct: 182 QIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLT 231 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M + IL+VEDE I ++ LE G+ + ++ E L+LLD MLPG Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG++ ++ L++ PV++LTAR D+V GL+ GA+DY+TKPF +EL+ARI+A Sbjct: 61 SGLEVLRRLRK--TDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAA 118 Query: 120 MRRISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 +R+ + + L ++ + V G++ +E+ P EF LL + + HP++V +RE Sbjct: 119 LRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTRE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 Q+L+ VWG + + VDV+IR +RK L+ +++ T+RG GY Sbjct: 179 QILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGY 224 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 141/229 (61%), Gaps = 5/229 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE +R ++ L + G+ VEA + A+ ++ LI+LD M+P Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + +++E++ +P++MLTAR E D+V+GL+ GADDY+TKPF P+EL+AR+ A++ Sbjct: 61 GWEVCEEIRKENLA--LPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + + + L +D H+V + P+ + P EF+LL + +P++V++R+Q Sbjct: 119 RRAVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQ 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 LL +WG + ++RTVD HI+ +R L+ G +++TV G GY+ Sbjct: 179 LLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLK 227 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+++D+ I M+ L G++ A +N + E PDLI+LD M+P Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K L+++ IP++M+T DRV GLETGADDY+ KPF+ +ELVAR+KA++ Sbjct: 61 GLEVCKRLRKD---AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117 Query: 121 RRI-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR+ +E + L +D ++ + G +E TEF LL FFM HP++V +RE L Sbjct: 118 RRLDHKKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELL 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++ VWG + E ++V++ LR LE R++ TVRG GY Sbjct: 178 MDRVWGFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLR 224 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ++L++ED+ IRE+ L+++ ++ A+D +N + P L+LLD +LPG Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ M + P++ L+ + + D+V+GL+ GADDY+TKPF EL ARIKA + Sbjct: 61 GYEICQKIR---MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 121 RRI----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR + + V L +D S+ V + + E +LL + + V+S Sbjct: 118 RRSKMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 E++ + +WG + + +TV VHI LR+ +E ++++TVRG GY+FST Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFST 229 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 137/227 (60%), Gaps = 1/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M++ I V+ED+A I +V L+ G+ + ++ P L +LD M+PGG Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + L+ + IP++ +TAR E DRV GLE GADDYITKPF+P+EL+AR+KAV+ Sbjct: 61 GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + +I + + +D ++ ++ E TEF+LL + HP RV+SR+ LL Sbjct: 121 RRFERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VWG +V R+VDV++RR+R+ +E + R ++TVRG GYRF Sbjct: 181 DAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+V+DE I ++V L+ + + A+ +++ DL +LD MLPG S Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + ++ + P++MLT + E D++ GL GADDYITKPF P EL+AR+KA + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 RRIS-----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR E VI GL ++ +H E+ L + PTEF +L + V S Sbjct: 118 RRYKKFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVS 177 Query: 176 REQLLNHVWGTNVYV-EDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 E L + +WG + + T+ VHIR LR+ + + + ++TV G GY+ Sbjct: 178 SELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 7/226 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE + + + F+L + GF+ D +A+ + + D++LLD MLPG SG Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L+ S +PV+M+TAR E D+V GLE GADDY+TKP+S +EL+ARI+AV+RR Sbjct: 64 CKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 125 PMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 E V+E + +D H V + + + EF LL + M + RV +R QL++ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + + +T+DVH++RLR +E + + TVRG GY+ Sbjct: 181 RVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 135/230 (58%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + IL+ +D I +++ ++ PV A D + A+ + P ++LLD M+P G Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ +S D+PV+++TARGE+ +++ GL+ GADDYI KPFSP E++ARI+A++RR Sbjct: 62 EVCRKIRAKS---DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR 118 Query: 123 I----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + + E V+ + L ++ + + G + + E + + ++P +V++R+ Sbjct: 119 MTKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDN 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 LL+ +WG + + + RTVD HI+RLR L+ H ++T+ G GY+F Sbjct: 179 LLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEV 228 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 14/233 (6%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN---EPWPDLILLDWMLPGGSG 61 I+VVEDE + +V L + G + D +A+ +L +P PDLI+LD MLP G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + +++ + P++MLTAR E DRV GLE GADDY+TKPFS +EL AR+ A++R Sbjct: 64 LEICRRVRQSKI---TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 122 R-------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 R I+ L++DP S V + +P+ + EF LLH +P RV+ Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRFS 226 SR+ LL+ VWG + DRTVD HI RLRK L G + T+ G GY++ Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 140/233 (60%), Gaps = 10/233 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + +IL+++DE + +++ L ++GFQ + A + +A+ N PDLI+LD +LP +G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ ++L++ + + P++ L+ + + D++ GL G DDYITKPFSP ELVARI A +R Sbjct: 63 LELCQNLRKITES---PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 122 RISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + + ++ + GL++D ++ + ++P+ + EF++L HP V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 QL +H+WG + + RTV VHI LRK +E + +++ T++G GY+ T Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDT 232 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 112/223 (50%), Positives = 158/223 (70%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + R+LVVEDE I+E++ L++NGF +SA L P L++LDWMLPG +G Sbjct: 7 SSRVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNG 66 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + + L+R TR +P+++LTARGEE DRV GLE+GADDY+ KPFSP+ELVAR+ A++R Sbjct: 67 LAWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLR 126 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + GL +D +HRV A E + +GPTEF+LL F+T+PERV+SR+ LL+ Sbjct: 127 RSYGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLD 186 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 +WG +VE+RTVDVHIRRLR+ LE G+ ++++TVRG GYR Sbjct: 187 QIWGRQSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYR 229 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 10/233 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +IL+VED+ I +++ ++ + D SA+ + DLILLD +P + Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L++ T++ P++M+TA+ EE D+V GLE GADDYITKPFS +EL AR KAVM Sbjct: 66 GVEVCRELRK---TKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVM 122 Query: 121 RRISPMAVEE------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + ++ L ++ RV + +++ P EF LL +P R Y Sbjct: 123 RRSDAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSY 182 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 SR +LL+ +WG N + TV+ HI RLR +EP G+ + T G GYRF+ Sbjct: 183 SRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFN 235 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + ILVV+DE I ++ + LEQ F+ + A D A+ + D I+LD MLP GI Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++ + P+++LTA+ E D++ GLE GADDY+TKPFSP+E++ARI+A+ RR Sbjct: 62 AVTKKIREAKL--KTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR 119 Query: 123 ISPM------AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + E I + LS+D T G+ L + P EF+LL +FM +V SR Sbjct: 120 TTQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 E+LLN VWG + E R VD+ + LR+ +E H ++TVRG GY+ Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLED 231 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+LVV+D+ +R++V L++ G+ A D ++A+ E PDL++LD MLPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ ++PVVMLTA GEE DRV GLE GADDY+ KPFSP+ELV R+ +++R Sbjct: 68 LEVCRRLRERG---EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILR 124 Query: 122 --RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R S A EV+ L LD + R L + EF LL F + HP R +SR +L Sbjct: 125 RARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAEL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L VWG + + TV VH+RRLR+ +EP + TV G GYR+ Sbjct: 185 LEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+ +D + E + L+ + + A D A+ + N PDL++LD M+P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + K +++ S ++P++MLTA+GEE DR+ GLE GADDYI KPFSP+E+V RIK + RR Sbjct: 65 EVCKEIRKIS---NVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 Query: 123 ISPMAVEEVI-----EMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++ + ++D + + +E +++ P E ++L+ T+ RV SRE Sbjct: 122 VGNANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 ++L+ VWG + + + R VD I+R+RK + G ++TV G GY+F Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + ILV+EDEA + V L G++ A D + + + PDL+LLDWMLPG SG Sbjct: 8 SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ S +PVV++TAR E DR GL+ GADDY+ KPFS +EL++RI+ + Sbjct: 68 LEICRRLR--STGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYL- 124 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + + + L LDP + V GE +E+ E+ LL + M HP +V +R+Q+L Sbjct: 125 RQPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILE 184 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVWG + + ++V+IR LR +E G R++QTVRG GY Sbjct: 185 HVWGCDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + R+LVVEDEA ++ L + G+ D AV Q E D I+LD MLPG G Sbjct: 29 SMRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDG 88 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ PV+MLTARG+ +DR+RGL+ GADDY+ KPFS EL AR++A++R Sbjct: 89 FEVCRRLREAGRWA--PVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVR 146 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + V+ + L LDP HRV+ PL++ EF LLH M HP+ V +R +++ Sbjct: 147 R-GAVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVD 205 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW VD ++R +R+ ++ +++TVRG GYR T Sbjct: 206 HVWDFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRT 251 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 96/227 (42%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA++IL++ED+ I ++ L+ GF+ D + ++ PD ILLD MLPG Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ + +K++ PVV++TA+GEE DRV GLE GADDYI KPF PKE+VAR+KAV+ Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 121 RRISPMAV-EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR E + + +++D H P + EF LL M RV RE L Sbjct: 121 RRRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETL 180 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 LN VWG + DRTVDVHIRRLRK + V+TV+ GYRF Sbjct: 181 LNTVWGDDYEGTDRTVDVHIRRLRKKMGE--SAAWVETVKQIGYRFR 225 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 8/224 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE IR ++ L + G++ EAED + + E DL++LD MLP G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ +K+ + PV+MLTAR + ED V G E GADDYITKPF+ K L+AR+K+++R+ Sbjct: 67 SILREIKK---YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK 123 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + M +IE+ L ++ TSH V + +E+ P E+ LL + + + + SRE+LLN Sbjct: 124 TNNMVES-IIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 VWG + +DRT+D HI+ LRK + ++T+RG GY+ Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKLD 222 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VED+ I ++ L + G+ + D +AV +L L++LD MLP G + Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ + + PV++L+A+ EE D++ GL GADDY+ KPF EL AR+KA +RR Sbjct: 66 VLQKIREKG---NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRY 122 Query: 124 -----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++I + ++ ++ V G+ + + EF++L F+ +P +V+++ Q Sbjct: 123 LNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQ 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 L +WG N ++ TV VHIRRLR+ +E + +QT+ G GY+ Sbjct: 183 LFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A+ ILVV+D+ I +++ LE + F + A + + A + D ++LD M+PG +G Sbjct: 3 AKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 F + ++ +S D+P++ L+AR + D++RGL G DDYI K SP E+VAR+KAV+R Sbjct: 63 FAFCRRIRAKS---DVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 119 Query: 122 R--ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + E ++E L+L+ T+ + + + + P E++LL F+ HP V+S +QL Sbjct: 120 RSASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 L+ +W + + TV VH+ RLR+ +E + + + V G GYRF Sbjct: 180 LDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 136/233 (58%), Gaps = 9/233 (3%) Query: 1 MARR---ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP 57 M+ + ILVVED+ I + L G++ ++A+D + + + + PDL++LD MLP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 58 GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 +G + +K L++ RD PVV+L+A+G E D++ GL GADDY+ KPF +EL+ARIK Sbjct: 61 ELNGFEVLKELRQRG--RDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIK 118 Query: 118 AVMRRISPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 AV+RR P A + +S+D + V P+E+ EFKLL F+ HP R + Sbjct: 119 AVLRRRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 +RE+LL+ WG + RTVD +R+LR EP R TVRG GYRF Sbjct: 179 TREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L+V+DE I ++ LE G+ + A D +A+ L D +LLD M+PG SG Sbjct: 6 TVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYD 65 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++ ++ RD+PV+ LTAR E+ D++RGL GADD+I K +P E+VARIKAV+RR Sbjct: 66 VLRRIREN---RDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRY 122 Query: 124 SP--MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 A V++ L +D +H V +P+++ EF+LL F HP +V++REQL Sbjct: 123 RRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQ 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +WG + + TV VHI RLR+ +E + R + TV G GYRF Sbjct: 183 RLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFD 226 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RR+LVVED+ + E+ L GF A D A++ PDLI+LD MLPG G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ D+P+++LTA G ++R+ GLE GADDYI+KPFSP+ELV R+++++RR Sbjct: 100 EVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156 Query: 123 I-SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + E + +LD ++H ++ E L + EF LL F + HP + +SREQLL Sbjct: 157 SIGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLK 216 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + TV V +RRLR+ +E H ++ TV G GYR + Sbjct: 217 SVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 21/240 (8%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGG 59 M IL+V+D I E++ +LE GF AE + A++ L++ P+LILLD M+P Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG + ++RE D+P++ L+A+G+ D+V G E GADDYITKPF +EL+ARI+A Sbjct: 61 SGYELCSQIRRE---WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117 Query: 120 MRRISPMAVE--------------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHF 165 +RR + V++ + L + ++ V + +E+ EF+LL F Sbjct: 118 LRRYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTF 177 Query: 166 FMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V++REQ+ + VWG TV VHI+ LR+ LE + ++T GTGY F Sbjct: 178 LAENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVF 234 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 10/232 (4%) Query: 1 MARR--ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M + ILVV+DE I +++ LE++GF + A D SA++ + LI+LD MLP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 +G + ++ S +P++MLTA+ EE++++ G+ GADDY+TKPFS +ELV R++A Sbjct: 61 MTGEEVCNRIRAVS---SVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRA 117 Query: 119 VMRRISP--MAVEEVIEM--QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 ++RR + +++ L +D V + + EFK+L F+++P +V+ Sbjct: 118 LLRRAYRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVF 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 SRE+L+ +G N DRTVD +I+ +R+ +E + TV G GY+F Sbjct: 178 SREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 135/230 (58%), Gaps = 11/230 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+++DE I E++ L G++ +A + +N +NE +++LD M+PG G Q Sbjct: 4 VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI- 123 ++++ +IP++ML+A+ ++ D+++GL TGADDY+ KPF+P EL+AR+K+ +RR Sbjct: 64 CMKIRKD---YNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 124 ------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + ++IE + ++++ +H+V+ + L++ P E+++L + V+S E Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VW + + TV VHI RLR+ +E ++++TV G GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A RILVV+DE I +V + L + G++ A A+ P LI+LD MLPG SG Sbjct: 8 ADRILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ L+ + TR++ V+MLTAR EE DR+RGL GADDY+TKPFSP ELV R+ A++R Sbjct: 68 FDVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILR 127 Query: 122 RISPMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + + + L +D + V + +E+ PTEFKLL RV R L Sbjct: 128 RTGSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHL 187 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L VW ++ RTVD+H++RLR L G +++TVRG GYR Sbjct: 188 LETVWEAAPDIQTRTVDMHVQRLRSKLGAAGE--LIETVRGFGYRLRA 233 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+V+DE IR ++ L+ G+ +A+ + A+ L + L++LD M+P Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ +IP++ML+A+GE+ D+++G+ TGADDY+ KPF+ EL RI+A+ Sbjct: 61 GFEVCSKVRER---YNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALF 117 Query: 121 RR-----ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 RR +++I ++ + +D H++ + + EF++L+ T+ RV+S Sbjct: 118 RRTYFLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFS 177 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 E++ VW Y + TV VH+ RLR LE ++++ TV G GY+ Sbjct: 178 AEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 3/224 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++V+EDE I E + L G + A + SA+ + E DL++LD MLP G+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ S +P+++LTARGE ++RV+GL+ GADDYI KPFS EL+AR+ A+ RR Sbjct: 78 VCRRLRAWSE--KLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA 135 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 V+++ GLSL+ + V +E+ PTEF LL FM HP RV++R+ LL+ V Sbjct: 136 GISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRV 195 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 WG + V+VHI LR+ + ++++TV G GY Sbjct: 196 WGFTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTLRP 238 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 129/224 (57%), Gaps = 2/224 (0%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVVED + E + LE GF A D + ++ D I+LD +LPG SGI Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + L+ E +P++MLTA G E+RV GL GADDY+ KPF +ELVAR++A++RR Sbjct: 61 EICRFLRDEEK-SQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR 119 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + + +E ++ L ++ + V EPL + EF LL FM +P V+SREQ+L+ Sbjct: 120 -NQVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDK 178 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +W + VDV++ LRK L+P G+D ++TV GYR Sbjct: 179 LWESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 8/232 (3%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M IL+ +D+ I ++V LEQ G++ + A+D + AV PD++++D M+P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G++ + +K M D+P+++L+A+ + D++ G + G DDY TKPFSP EL R+KAV Sbjct: 61 DGLEASQKIK---MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAV 117 Query: 120 MRRISPMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 +RR + + +V++ Q ++ ++ V + + + EF +L +HP +++SR Sbjct: 118 LRRSKAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSR 177 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 QLL +W ++ ++ TV VHIRRLR+ +E +++TV G GY+F Sbjct: 178 LQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I + E G+ + A + A+ ++ D+ILLD M+P Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNID 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q + ++ + P++ L+AR E D+++GL G DDYI KPFS KEL AR++A + Sbjct: 60 GFQVCQKIRDK---VSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 RRISPMAVEEV--IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + + I L+LD S +V EE + EF ++ HPE+V+S+EQ Sbjct: 117 RREKRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQ 176 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKA-LEPGGHDRMVQTVRGTGYRFS 226 + VWG + + TV HI+++R ++ + TV G GYR+ Sbjct: 177 IYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGF-QPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 RIL+V+DE + ++ LE+ GF + A + P L +LD MLP G Sbjct: 3 QPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGE 62 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q + ++ +S +IP++ L+A+ EE D++ GL G DDYITKPFSPKE+ R+KA + Sbjct: 63 GYQLCQQMRAQS---NIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQL 119 Query: 121 RRISPMAVE--EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+S M E + ++ V E LE+ E LL F+ +P R+ S+E Sbjct: 120 RRVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKET 179 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L VWG + + D TV VHIRRLR+ +EP ++TV+G GYR + Sbjct: 180 LFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 97/230 (42%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +RIL+V+DE + ++V E+ GF E + A+ +L DL++LD LPG G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ ++ E + PV+MLTAR +E DRV GLE GADDY+ KPFSP+ELVAR++A++RR Sbjct: 62 GVLRQMRAEGFEQ--PVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119 Query: 123 I------SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + GL LD R + L + P EF LL + +HP +V++R Sbjct: 120 TAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTR 179 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKAL-EPGGHDRMVQTVRGTGYRF 225 E LL VWG + YV+ RTVDVHIRRLR L E ++QT G GYRF Sbjct: 180 EVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+VEDE + + +L+++ + A D ++ + DL +LD MLP SG+ Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ +++ + PV++LTA+ EDRV GL+ GADDY+ KPF KEL+AR++A+ RR Sbjct: 61 DILRAMRKAGL--QTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 +A + IE LD + V EPL + EF+LL FM +P +V S+E +L+ Sbjct: 119 TGQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDR 178 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + V V+ ++ LRK ++ + TVRG GY F Sbjct: 179 VWGPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 3/229 (1%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M++ +ILVV+DEA IR+++ L G+ V A + AV+ + PDLI++D MLP Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 SG K L+ PV+ L+AR ED++ GL G DDY+TKPFS E++AR+ A+ Sbjct: 85 SGFAATKRLREAGF--RCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 142 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V+ I + L +D S+ V +++ PTEFKLL +FM +P RV S+ Q+ Sbjct: 143 LRRTKIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQI 202 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 L HVW + + V+ +I +R+ L + ++ T RG GY TR Sbjct: 203 LGHVWDYDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 131/234 (55%), Gaps = 12/234 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +ILVV+DEA IR ++ L G++ + A + + A+ + +P L++LD M+P G Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + L++ES D+P++MLTA GE DR+ GLE GADDY+ KPFSPKEL ARI++V+R Sbjct: 65 YGVCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLR 121 Query: 122 RISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + +I + L +D +V E + + EF LL ++ +S Sbjct: 122 RADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 176 REQLLNHVWGT--NVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 R +L VWG +V+ R VDVHI RLR LE + ++ T RGTGY F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 7/228 (3%) Query: 1 MARR--ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M R+ +LV+EDE I + L G+ A D + +++ E PDL++LD MLP Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G++ + +++ T + P+++LTA+ +D+V GL++GADDY+ KPFS +EL+AR++A Sbjct: 61 LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 +RR++P EV + L ++ + G +E+ EF+LL +P +V+SR + Sbjct: 118 HLRRVNPAVTGEV-RVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFE 176 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + VW VDV+I LR+ LE GG R++ TVRG GY Sbjct: 177 IEEKVW-PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLR 223 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 142/229 (62%), Gaps = 6/229 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +IL+V+DE I E++ LE++G+Q AE + A+ + PDL++LD MLPG G Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + ++ + + P++ML+A+GEE D + GLE GADDYITKPFSPK L+ARI++V+R Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 122 RIS----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R P I + G+++ P H V + +++ P+EF +L F + P V++R Sbjct: 123 RQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRW 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 Q+++ + G + V DR+VDV I LRK LE G ++TVRG GYRF Sbjct: 183 QIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYGE--YIETVRGVGYRFR 229 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I + + L+ G+ A + + + L ++D M+P GI Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ D PV+MLTA+ EE D++ GL GADDY+TKPF+P EL+AR+ + +RR S Sbjct: 66 VMKLREN---YDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYS 122 Query: 125 P--------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + + GL L+ + V+ E +++ P EFK+L M +P RV+S Sbjct: 123 KYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSA 182 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 E++ VW D TV VH+R +R+ +E + + ++ V G GY+ + Sbjct: 183 EEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A R+LVV+DE I ++V L +GF V A A+ + PDL++LD MLP G Sbjct: 20 APRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADG 79 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + ++ VV LTAR D++ GL G DDYITKPF+ +EL+AR++AV+R Sbjct: 80 FEVCRRLRADG--AEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLR 137 Query: 122 RISPMAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 R A E ++ + LDP +H V ++P+E+ PTEF LL +F+ +P RV SR Sbjct: 138 RTRRPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSR 197 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 Q+L VW + E VD ++ LR+ L G ++ T RG GY Sbjct: 198 AQILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP-LIHTQRGFGYALR 246 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILV EDE IR + L++ G++ +EAE+ A++ + D++LLD M+P G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + + S + ++MLTAR EED+V GL GADDYI KPFSP EL+ARI++++RR+ Sbjct: 63 VCEQAR--SKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 124 ---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + +D + RV +E+ PTE+ LL F+ + ++V SR++LL Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 + VWG N + + +TVDV+IRRLR+ +E + ++T+ G GY++ Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRN 228 >UniRef50_P45189 Phosphate regulon transcriptional regulatory protein phoB n=18 Tax=Pasteurellaceae RepID=PHOB_HAEIN Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 121/227 (53%), Positives = 162/227 (71%), Gaps = 2/227 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M R+IL+VEDE IREM+ L Q + +EA D+ +A+N++ E P LILLDWMLPG S Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFI+++K++ IP++MLTA+ EED + L GADDYITKPFSP+ L+ARI+AV Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRI + I++ LS+D + RV ++ + + TEFKLLHFFM HPE+VYSREQLL Sbjct: 120 RRIY-EQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLL 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N +W ++ VE RTVD +IRRLR+ L P + +QTVRG+GYRFS+ Sbjct: 179 NRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSS 225 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL++ED+ I +V LE+ F+ V D +S + E L+L+D MLP G Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ S ++P+++++A+ + D+V+ GADDY+TKPFSP EL AR+KA +RR Sbjct: 63 CEKIRASS---EVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 125 P--MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 E+ ++ + +D RV A E + + EF+LL F HP RV+++E+L Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 VW + + + RTV VH++ +R L+ G H + ++TV G GY+F Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 12/234 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+++DE I +++ L+ + + A++ + DL +LD MLP + Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++++ P++MLTA+ EE D++ GL GADDY+TKPF P E+VAR+KA + Sbjct: 78 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 RRISPMAV-------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR + + L L+ +H + E + + PTEF +LH ++ V Sbjct: 135 RRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNV 194 Query: 174 YSREQLLNHVWGTNVYV-EDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 S E+L + VW Y T+ VHIR LR+ L + ++T+ G GY+ Sbjct: 195 VSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 9/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ L NGF+ A D S + + DLILLD MLPG G Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+R +++PV+M+TAR EE D +RGL GADDYI KPF+P ELVAR+++ + R Sbjct: 62 AVCRELRR---YKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118 Query: 123 ISP-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + V++ L + ++RV ++ + EF+LL F HP V+SRE Sbjct: 119 YERILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSRE 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L VWG + TV VHI R+R+ +E H R ++T+RG GYRF Sbjct: 179 ALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 139/227 (61%), Gaps = 7/227 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA +L+VEDE +++++ + + G A+D A+ L DL++LD M+P Sbjct: 20 MAN-VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLD 78 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K + S ++P++MLTA+G E+D+++G E GADDY+TKPFSPK L+A+ A++ Sbjct: 79 GFSVCKLAREMS---NMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALL 135 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR SP + + + + + + P+SH+V + + + E++LL+F M +P ++++R+QLL Sbjct: 136 RRSSPAPL-DALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLL 194 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N +WG + RTVD HI+ LR+ L G + + T+ +GY+F Sbjct: 195 NRIWGYDFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 143/228 (62%), Gaps = 5/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +IL+V+DE I E+V F L++ G+ + A + A++ PDL++LD MLPG G Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ ++T +IP+VMLTA+GEE D V GLE GA+DYI+KPFSP+ELVARI+ ++R Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122 Query: 122 ---RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 R+ A + + LS+D HRV+ + L++ +EF++L F +T V++R Q Sbjct: 123 RRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQ 182 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +++ V G N V +R+VDV I LRK L ++TVRG GYRF Sbjct: 183 IVDAVHGENYAVTERSVDVTIAGLRKKLG--PCADFIETVRGVGYRFR 228 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 3/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILVVED+ + +++ LE G+ A D +A+ EP LI+LD MLP S Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L+ E++ P++MLTARG + D+V GL GADDY++KPF+ EL+ARI+AV+ Sbjct: 61 GLEVCQRLRSENVV--TPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + L +D V + L++ EF++L + RE++ Sbjct: 119 RRTHQSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIY 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 VWG + V +RT+D HI RLR LE R + TV G+GYRF Sbjct: 179 QEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M +L+VEDE I ++ L + F A+ L E PD ++LD LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 GI+ + ++ S ++ +++L+ARG + D+V GL GADDY+TKPFS ELVARI A Sbjct: 61 DGIEICRKIREHS---NVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAH 117 Query: 120 MRRISP-----MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 +RR ++V+ + + ++ + + +P+ + EF+LL F + +V+ Sbjct: 118 LRRQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVF 177 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 S+ QLL+ VWG + Y ++ T+ V+IRR+R+ +E H +QTV G GY+FST Sbjct: 178 SKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFST 231 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +R+LV+EDE + ++ + L G++ + + DLILLD MLPG + Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L+ E + PV++LTA+ EE+ V+GL++GADDYITKPF EL+AR+ AV+ Sbjct: 61 GFEIMSKLRSEGV--KTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVL 118 Query: 121 RRISPMAVEE--------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 RR + E I + L++ P + V EP+ + P EF++L + P Sbjct: 119 RRSTGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGV 178 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 V +R+ L+N VWG + RTVDVH+ LRK LE + ++RG GY+ Sbjct: 179 VMTRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVV 233 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R +VVEDE + +V LE+ G++ A D AV+ E PD+++LD LPG GI+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ S D VVMLTAR +E D + GL GADDY+TKPFSP+EL+AR++A++RR Sbjct: 125 VCRRLRTFS---DCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRP 181 Query: 124 SP--------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 P ++ LS+D + V +E + + TEF LL P V+S Sbjct: 182 RPKTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFS 241 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 R QL++ VWG + ++ VDVHI LR+ L+ + ++TVRG GYR T Sbjct: 242 RRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGT 294 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 111/221 (50%), Positives = 156/221 (70%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 RILVVEDE I+E++ L++ GF + A L +P P LI+LDWMLPG SG+ Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + + L+R T+ +P+++LTARGEE DRV GLE+GADDY++KPFSP+EL AR++A++RR Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + + L +D +HRV +E + MGPTEF++L F T+P+RVYSRE LL+H+ Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG ++E+RTVDVHIRRLR+AL G+ +++TVRG GYR Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYR 232 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RILV EDE IR + L++ GF EA + AV + D++LLD M+P G Sbjct: 2 NRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ + ++ ++MLTAR EED++ GL GADDYI KPFSP ELVARI+A++RR Sbjct: 62 EACAAIRD--LDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119 Query: 123 ISPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + + ++ ++ ++D + +V + +++ PTE+ L+ + + E V SR+ LL Sbjct: 120 VEKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 + VWG N + + +TVDV+IRRLR+ +E H ++T+ G GY++ Sbjct: 180 DAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 ++IL+V+DE I ++ VL++ GF+ ++ + PDLILLD MLP Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +++ + +P+ L+A+ E+ D++ GL G DDYITKPFSPKE+ ++KA Sbjct: 70 GYSVCEQIRQFTF---VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFF 126 Query: 121 RRIS-PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + + +++D V+ L + EF +L F + +P +++S+ +L Sbjct: 127 RRNQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARL 186 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 VWG D + VH+R LR+ +E + TVRG GY+ +T+ Sbjct: 187 YEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTK 236 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%) Query: 1 MAR---RILVVEDEAPIREMVCFVLEQNGFQ-PVEAEDYDSAVNQLNEPWPDLILLDWML 56 M+R ++L+++DE I E++ VL + G V A + Q ++ PDL++LD ML Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92 Query: 57 PGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 P G G K ++ S +P++ L+A+GEE D++ GL G DDYITKPFSPKE+ R+ Sbjct: 93 PDGEGYDICKQIRDIS---HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRV 149 Query: 117 KAVMRRI---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 KA +RR+ P +I+ L+ + E +E+ P E L+ +F+ HP RV Sbjct: 150 KAQLRRVSYLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRV 209 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 S+E L VWG + + D TV VHIRRLR+ +E + TV+G GY+F + Sbjct: 210 ISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVVK 265 >UniRef50_B6BUZ2 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BUZ2_9PROT Length = 233 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 100/228 (43%), Positives = 145/228 (63%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 IL+VEDE I EM+ L N FQP+ A + + A + L + DLILLDWMLPG G Sbjct: 3 KPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I F+K ++ S T +IPV+MLTA+ EE +++ G + GADDY+ KPFS KEL+ARIKA++R Sbjct: 63 IDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILR 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R P + I+ L + P SH V + +++GPTEFKLL+ + RV SRE +++ Sbjct: 123 RKKPDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVD 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF 229 +W ++ RT+DVH++RLR L+ G + ++T+RG GY+ S Sbjct: 183 KIWNNESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKLSDEI 230 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+V+DE I + V + L + G+Q AE+ D A+ DL +LD M+PG +G + Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 ++L+ + PV+ L+AR E D+V GLE GADDY+ KPF +EL+AR++A++RR Sbjct: 67 LCRNLRTR---TNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRG 123 Query: 124 SPMAVE---EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 A E I G++LD H +++ P EF+LL M +V SRE LL Sbjct: 124 QMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLL 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 WG E +TVD HI+RLR L G +++TVRG GYRF Sbjct: 184 REAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ ++LV+EDE + ++ + L Q G+ + + + + DLI+LD MLPG + Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + L++ + P+++LTAR EE+ V+GL+ GADDYITKPF EL+AR+ AV+ Sbjct: 61 GFEILTRLRQNGV--KTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118 Query: 121 RRISP------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR E+VI + LS+ P + V+ E + + P EF++L + + P V Sbjct: 119 RRTQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVI 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +R+ L+N VWG + RTVDVH+ LRK LE G ++++RG GY+ Sbjct: 179 TRDDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL-GQSVQIESIRGVGYKL 228 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 11/230 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+V+D+ I+ + L + GF+ A AV PDLI+LD LP G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ + +P++ L+ R ++ D++ G G DDYITKPFSP LVA++K+ +RR Sbjct: 66 CRIIRTK---TKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK 122 Query: 125 PMAVEE-------VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 ++ + L++D V +P+ + EF+LL + RV+S E Sbjct: 123 ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAE 182 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L + +WG + + + RTV VHI LRK +E + TVRG GY+F+ Sbjct: 183 HLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+ IRE++ + L G+ + DY + L DLI+LD MLPG SG++ Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 +K ++ T++IPV+MLTA+ E D++ GL++GADDY+ KPFS EL+AR++A++RR S Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + I + + LD V E +E+ EF+LL++ +++ +V +RE ++ +W Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 G + E RTVDVHI LR+ L+ +++T+R GY+ Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASS--IIKTIRNLGYK 235 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 14/234 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVVED + E++ L G+Q A D +A++ + PDL++LDWMLP G+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +++ T+ PV+MLTAR EE D V GLE GADDY+TKPF +EL+AR++A++RR Sbjct: 66 EVLRTIRQ---TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122 Query: 123 ISP---------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 EV+ L LDP H V ++ L++ PTEF +L + +P R Sbjct: 123 DQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRA 182 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +SR LL+ +WG + DR+VD + RLRK L G ++TV G GYR Sbjct: 183 FSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA--IETVWGLGYRLQA 234 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 9/228 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL+V+DE I ++V + L++ G+ A D A++++ P +++LD MLP + Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K L ++I ++MLTA+ + D++ GLE GADDY+TKPF +EL+ARIK+++ Sbjct: 61 GYDVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116 Query: 121 RRISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR+ EE VI + L+++ V LE P EF LL+ +++ VYSR Sbjct: 117 RRLDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSR 176 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 EQ+LN +W + RTVD HI+R+RK L + ++QTV G GY+ Sbjct: 177 EQILNIIWNMDYAGGTRTVDTHIQRIRKKLGNN-YQDLIQTVYGIGYK 223 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I VED+A IREM+ + L+ GF + + E PDLILLD MLPG G+ Sbjct: 2 IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+R+ T IPV+M TA+G E D+V+GL+ GADDY+ KPF E+++RIKAV+RR Sbjct: 62 LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + + I + L +DPT++ V G E + + EF+LL F +P RV++R++LL+ VW Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 G E RTVDVHI LR L G+ ++ TVRG GYR R Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEER 223 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 5/228 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + +L+VED A +R+M+ LE++G++ A + + + PDL+LLD M+PG G+ Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 +F++ + T +PV+ LTAR E D+V GLE GADDY+TKPFS EL+AR++A +RR Sbjct: 83 EFLRRFRA---TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S V+ L LDPT+ + E +++ +EF+L+ F+ P RV++R +LL Sbjct: 140 SSEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ 199 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRFSTRF 229 + +RT+DVH+R LR +E G R+++TV G GYR + Sbjct: 200 L-QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPDL 246 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+DE P+ +MV L + GF +A AV++ PD+++LD LP G++ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 + ++ S D ++MLTARG E+D++ GL GADDYITKPFS +ELV R+ AV+RR Sbjct: 102 VCRRIRTFS---DCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRP 158 Query: 123 ---ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +P V + + L LDP +H+V GE +E+ TEF+LL P +V +R L Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR-MVQTVRGTGYR 224 + VW T ++R VDVHI LR+ L R + TVRG GYR Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED++ I+E++ L G+Q A D + + + DL++LD M+P Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K +++ S +P++ LTA +E D+++G + DDYITKPFS L+ R++A++ Sbjct: 61 GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + ++ I + L LD ++ EP+E+ EF +L + +V +RE LL Sbjct: 118 RRSNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + +WG + Y + R VD HI+ +RK + ++TV+G GY Sbjct: 178 DSIWGYDYYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLE 219 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 135/226 (59%), Gaps = 7/226 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +L++EDE + +++ LE+ G+Q + D + + + PD+++LD MLP SG + Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +++E ++ P++MLTA+G E++++ GL GADDY+ KP SP+E++AR+K ++RR+ Sbjct: 69 IARKIRKE---QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRV 125 Query: 124 SPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +E+I +++D + ++ + + TEF +L +P++V+SRE L Sbjct: 126 GKEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLA 185 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + ++G + RT+D HI+ LR+ +E ++TV G GY+F Sbjct: 186 DRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 12/235 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +IL+V+D+ + +V L G+ A D + L ++LD M+P G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +K L+++S DIPV+MLTA GEE DR+ GLE GADDY+ K FS +EL+AR++AV R Sbjct: 70 FEMLKQLRKQS---DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTR 126 Query: 122 R--------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 R + + + L + + +PL + P E+ LL P RV Sbjct: 127 RHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARV 186 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 SR+QLL+ V G + V DR+VDVHI LR+ L + R +QTVR GY F+ Sbjct: 187 LSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFND 241 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL++ED+A + ++ + LE+ GF A+ + PDLILLD MLP G+ Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K ++++ IPV+ LTAR E DR+ GLE GA+DY+ KPF +EL+ARIK R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR- 125 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + ++E G+ LD TS +V PL + TEF+LL F M P V+SREQLLN Sbjct: 126 -NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNA 184 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTR 228 VWG + + DR VDV++ RLR+ +E ++ +VRG GY F R Sbjct: 185 VWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPR 231 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 IL+V+D+ I V L Q GF+ + A + + A+ +N L +LD M+P G Sbjct: 18 KNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDG 77 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + ++ + +P++ L+A+ + D+V G TGADDYI KPFS E +AR+KA +R Sbjct: 78 IELCRRIREKH---SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 134 Query: 122 RISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 R + V I ++GL +D S VM E + + TE+ +L+ RV++ Sbjct: 135 RYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFT 194 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 E++ VW Y + TV VHI RLR +E + +Q V G GY+ Sbjct: 195 IEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 IL+V+D+ IRE+V LE+ GFQ EA D A+ ++NE D+++LD M+P G Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 L++ DIP++MLTA+GE +V+G G DDY+ KPF P ELV R+KA+++R Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + V + I++ + L+ + V GE+ + + EF+LL + R SREQL+ Sbjct: 149 YQ-ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIED 207 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + +RT+DVHI RLR+ + ++T+RG GYR Sbjct: 208 VWGYDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M ILVVED+ I+E++ L + V A D + Q N+ DLILLD M+P Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 +G + K ++ +S ++P++MLTA EEED+++G + G DDYITKPFS L+ R++AV Sbjct: 61 NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR V + + + +D ++RV + + + EF++L + +V +RE + Sbjct: 118 LRRSYDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENI 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + VWG + + E R +D HI+ LRK L ++T++G GY+ Sbjct: 178 VEKVWGYDYFGETRIIDTHIKNLRKKLAIP----YIKTIKGIGYKID 220 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 12/226 (5%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M + IL+VEDE + + L + D +++ + DLI+LD MLP + Sbjct: 1 MTQ-ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSIN 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + ++++ + P++++TA+ + D+V GL+ GADDYI KPF +EL+ARI+A++ Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR +++I++ G L +V +E+ TE+ LL+ + V REQ+L Sbjct: 117 RR---QPQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQIL 168 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 NHVWG N VE VDV+IR LR L+P D+M++TVRG GY Sbjct: 169 NHVWGYNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++IL+VED+ I E+ LE + F+ D S +N++ E DLI+LD MLP G Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 ++ + T+D+PV+M++A+ EE D+++GL GADDYITKPFSP ELVAR+K+ ++ Sbjct: 62 DILRII---HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQN 118 Query: 123 ISPMAV-------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 + VI ++GL ++ S +V+ ++ + + EF LL +P RV+ Sbjct: 119 YERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFG 178 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +++L +WG + + TV VHIRR+R+ +E + ++TV G GYR Sbjct: 179 KDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 10/232 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I++VED I E V L++ F V A AV L + P LI+LD +L G+G Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 65 IKHLK------RESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 + ++ + D+P+++L+AR +EEDR+ G GADDY+TKPFSP EL RIK+ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++RR +++ IE+ L +DP V P+E+ P EF+LLH +HP RV+SRE+ Sbjct: 131 ILRRSIGLSIA-CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREE 189 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH---DRMVQTVRGTGYRFST 227 LL VWG + RTVDVH+ RLR LE G + M+ T G GY+ + Sbjct: 190 LLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLES 241 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 11/236 (4%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA R+L+ +DE I E++ LE++G A + A+ +N D+ ++D M+P Sbjct: 1 MA-RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQID 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G ++ ++ D+PV+ML+A+ E D++ GL+ GADDYITKPF+ E++AR+KA + Sbjct: 60 GYHLVRKIREN---YDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQL 116 Query: 121 RRISPMAVEEV------IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 RR + E+ +E L L+ + + + + TE+K+L + + + +V+ Sbjct: 117 RRYNKSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVF 176 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFSTRF 229 +++Q+ +VW Y +D + VHI LR +E + ++T+RG GY+ + Sbjct: 177 TKKQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSNI 232 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 137/230 (59%), Gaps = 7/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVV+DE + E+V F LE+ G++ + A+D + A+ PDLI+LD ++PG G Sbjct: 2 PNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L+R+ TR IP++ML+AR +E D+V GLE GADDYITKPFSP+ELVAR+ A +RR Sbjct: 62 SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 123 ISPMA------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 + +I L +D + G + + EF+LL+F P + +SR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 LL W +V + RTVDVHIRR+R+ LE + + ++T RG GYRF Sbjct: 182 YFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVV+DE + E+V LE+ G+ A D + A+ DLI+LD MLPG G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ T +IP+V L+A+ EEED++ GL G DDY+TKP SP+ LVA +KAV+RR Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSG 130 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + ++E+ GL + +R E L + TEF+LL + + HP + ++R+QLL +W Sbjct: 131 -VEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIW 189 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 + V +RTVD HI+ LR+ L + +QTVRG GYRF Sbjct: 190 KDAMMVTERTVDAHIKNLREKLGDFA--KHIQTVRGVGYRF 228 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 197/197 (100%), Positives = 197/197 (100%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 Query: 181 NHVWGTNVYVEDRTVDV 197 NHVWGTNVYVEDRTVDV Sbjct: 181 NHVWGTNVYVEDRTVDV 197 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+DE +R ++ L + GF+ EA + + A+ D+ILLD MLP G Q Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 K ++ + + ++MLTAR E +D+V GL GADDY+TKPF P+EL+AR+ +++RR Sbjct: 75 VCKKIREK---DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131 Query: 124 SPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + E +E L + P V+ + +E EF L +R +SRE+L Sbjct: 132 AITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREEL 191 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +N +WG E R VD HI+ +R+ + G +QTV G GY+F+ Sbjct: 192 VNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFN 239 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+L+VEDE I M+ L G+ + AED ++ + E D++LLD MLPG G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ +PV+MLTAR E E +V L+ GADDY+TKPF+ +EL+ARI+A++RR Sbjct: 61 EVLRR--LRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + L LD S RV +E+ EF LL + M HP +V SR+Q+L+ Sbjct: 119 ADQ-PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSA 177 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW VDV++R LR+ L+ G ++ TVRG GYRF Sbjct: 178 VWDYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDP 222 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 L+VEDE + + LE GF D S + + DLILLD MLP SGI+ Sbjct: 14 LLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIELC 73 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISP 125 + ++ T+D+P++M+TARGE D V GL++GA+DY+ KPF+ +EL ARI+ ++ R Sbjct: 74 RRIRE---TKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLL-RQRE 129 Query: 126 MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWG 185 + I + L + P + RV EE + + P EF LL++ + + E+ SREQ+L VWG Sbjct: 130 SKANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG 189 Query: 186 TNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VDV+IR LR +E +++ TVRG GY Sbjct: 190 FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 4/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A IL++ED+ + + E G+ A D D+ + P LI+LD MLP +G Sbjct: 4 AETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ E + ++P++MLTA+G+E D V GL+ GADDY+TKPFS KEL+AR++A +R Sbjct: 64 YEICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLR 121 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R V D T+ ++ + + + P EF LL F +T+ R SR+++++ Sbjct: 122 R-QRKQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMS 180 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 VWG + V R++D + LR +EP R+++TVR GY+F Sbjct: 181 TVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 9/228 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 IL+ +DE + + + +E G++ V+A + ++ +N+ DL+LLD M+P G++ Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR- 122 ++ L+ +R IPV+M+TA+ +E DRV GL +GADDYI KPFSPKEL+ARI+A +RR Sbjct: 67 ALRELR---TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRN 123 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + +E ++ + + ++ S +V E + + EF LL FM HPE+V++REQLL Sbjct: 124 YGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLL 183 Query: 181 NHVWGTNV-YVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +HVWG N RTVD H++ +R + GG +TV G GY Sbjct: 184 DHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGD--YFRTVYGVGYVLED 229 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 136/232 (58%), Gaps = 7/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA + +VEDE I E++ LE++G++ A++ + ++ E PD ++LD MLP Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K ++ +T D+P++ML+A+ EEDR+ G+ GADDY+TKPFSP+E++ R++A++ Sbjct: 61 GEEICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAIL 117 Query: 121 RRISPMAVEEVIEM--QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR + E+ + + +D V+ E + + P EF ++ HP RV+SR Sbjct: 118 RRTRTLNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRAD 177 Query: 179 LLNHVWGTNVY-VEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 LL + + + +R++DVHI+ LRK LE + + TV G GY+F + Sbjct: 178 LLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGK 229 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RIL+ ED+ + + L+ G+ +D DSA+ + DLILLD MLP S Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G K L+ + +P++MLTARGE D+V GL++GADDY+TKPF EL+ARI+A++ Sbjct: 61 GFDVCKKLRESEI--GVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALL 118 Query: 121 RRI--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR ++ G+++D V +P+ + E++LL + + H +RE Sbjct: 119 RRAPVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRED 178 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 LL VWG + + RTVDVH+ LR+ LE R +QTVRG GY+ S Sbjct: 179 LLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSD 228 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 R+LVV+DE I ++V L GF+ +A+ ++ PDL++LD ML G Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ +P + LTAR +D+VRGL G DDY+TKPFS ELVAR++A++RR Sbjct: 140 VCERLR--GAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRA 197 Query: 124 SPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + + L LDP + V +E+ TE++LL F + + V +R QL Sbjct: 198 GSPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQL 257 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 L+HVWG + E ++ +I LR+ + ++ TVRG GY Sbjct: 258 LDHVWGHDFSGEGGVLETYISYLRRKV-DNVEPPLIHTVRGVGYVLR 303 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + I++V+DE +REM L+ G+ + AED + A++ + + PDLILLD +PG G+ Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ + IPV+ L+ R D+V E GADDY+TKPF +EL ARIKA +R Sbjct: 62 EVCREIRSQ---LSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRM 118 Query: 123 I--SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +P + + L +DP + + E + + E KLL F HP +V++ EQL Sbjct: 119 YAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLY 178 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 + +W + TV VHI LR+ +E + +QTVRG GYRF Sbjct: 179 DRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ + L+VED+ + E + GF+ A+D A+ + D+I+LD ++P Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ K L+ +S +IP++MLTA+ + ED++ GLE GADDYITKPFS KEL+ R+K V+ Sbjct: 61 GVKVCKQLRLQS---EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + E+ I ++ L++D +V + + + P EF+LL +P + RE LL Sbjct: 118 RRYNKVQEEK-IVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLL 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 N VWG + VDV+I+ +R LE +++ T+RG GY ST Sbjct: 177 NKVWGIASDYDSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYMLST 222 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+VEDE I + V L++ G+ AED + D+I+LD MLPG G Sbjct: 16 TMKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDG 75 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +K L++ T +PV+++TARGE ++R+ GL GADDY+TKPF EL+ARI+A+ R Sbjct: 76 LSILKSLRKSGNT--VPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHR 133 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R S ++ ++++ L ++ ++ V E +E+ EF LL + M P RV +R Q+L Sbjct: 134 RSSGKSLS-MMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILE 192 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 HVWG + VDV ++RLRK ++ G +++TVRG GYR Sbjct: 193 HVWGYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMR 237 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +ILVVED+ I++ + +L+ + V+A D ++AV DL++LD LP G Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 +K +K D+PV++LTARGEE D++ G G DDY+TKPFSP EL+ RIKAV+RR Sbjct: 63 VLKEIKNR---EDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRY 119 Query: 124 SP-MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 EE+++ ++++ + V+ EP+E+ E+ LL +P R++++EQ+++ Sbjct: 120 RKGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDR 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYR 224 +W + V V +RRLR+ +E R+++TV G GY+ Sbjct: 180 LWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZIT9_BREBN Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL+ +D+ +RE++ F L + G+ + D + A L + L ++D M+PG + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ D+PV++LTA+GE D+ +G G DDY+TKPF P EL+ RIKA++ Sbjct: 61 GWELCREIREF---YDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + +++I + +D SH V EE + + EF+LL + P+R+++R+QLL Sbjct: 118 RRYQMV-SKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLL 176 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 VWG + + RT+DVHI+RLR+ +D ++ TVRG GY+ R Sbjct: 177 ELVWGGDTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEVR 224 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 137/226 (60%), Gaps = 9/226 (3%) Query: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 ++VED+ I EMV L + GF V A D + + + DL+LLD MLP +G+ F+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISP 125 K ++ +S +IPV+M++A+ + D+ GL GADDYI KPFS EL AR+KA +RR + Sbjct: 61 KIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 117 Query: 126 MAVEE-----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 + EE VI + L++D + V+ EPL++ TE++LL F ++P++V+++EQ+ Sbjct: 118 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 VW + + ++VH+RRLR+ +E + ++T+ G GY+ Sbjct: 178 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +LVVED+A IR ++ L G+ A D +AV Q PDLI+LD MLP G Sbjct: 10 GHTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + L+ + + PV+ LTAR EDR+ GL +G DDY+TKPF +E++ R++A++R Sbjct: 70 FRLTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILR 127 Query: 122 RISPMAV----EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R A + GLSLD ++H V PL + PTEF+LL F+ HPERV + Sbjct: 128 RAGAPASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKA 187 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++L VW + + R VD +++ LR+ L+ GG ++ TVRG GY Sbjct: 188 EILQRVWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLR 236 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+IL+VEDE + ++V L+ GFQ + A D SA++ ++ +L +LD MLP G Sbjct: 2 RKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGS 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +++++R++ PV+MLTA+ + D+V GADDYI KPFS EL AR+KAV+RR Sbjct: 62 EVLQYIRRKTSK---PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRR 118 Query: 123 ISPMA--------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 E ++ L ++ + V + + EF LL + P RV Sbjct: 119 TEGTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVV 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 + Q+ VWG +D TV VHI RLR +E + + +QTVRG GYR Sbjct: 179 TIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 5/219 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+VEDE I ++V L ++GF D D+ + P + +LD LPG G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR++ Sbjct: 71 CRRLREAGDW--TPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVA 128 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 + G++LDP V A +P+++ TEF LL M P RV++RE+LL VW Sbjct: 129 GPPPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVW 188 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 G V RTVDVH+ ++R L P + +++T RG GY Sbjct: 189 GYAVPAGTRTVDVHVAQVRAKLGP---ESVIRTHRGVGY 224 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ I +++D+ IR+++ +E+ G+ ++ + + N+ PD+++LD M+PG Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K +++ S D+P+++++AR E+ D++ GLE G+DDYI KPFSP+EL+AR+K+V Sbjct: 61 GYELCKEIRKIS---DVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVF 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR+ I ++ + + P +V+ E + EF+L+ F + + ++REQLL Sbjct: 118 RRVKMPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLL 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + + E R VD ++R+RK L+ G + + T+ G GY+ + Sbjct: 178 EKVWKYDSFTETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVES 224 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 138/223 (61%), Gaps = 3/223 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 R+L+VED+ IR+++ L ++ V+ E+ A + L + DL +LD MLPG +G Sbjct: 2 ERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 +K ++ ++ +D+PV++L+A+ +E D++ GL+ GADDY+TKPFS EL ARI++++RR Sbjct: 62 DILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 E +I++ GL +D V EEP+E+ EF+LL + + R SRE+L+N Sbjct: 122 SKK--DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQ 179 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +WG + E RT+DVHI LRK L + +Q+VR GYR Sbjct: 180 IWGYDFIGESRTLDVHINSLRKKLG-NEYAHWIQSVRQVGYRL 221 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 MA RIL++EDE P+R + LE G++ + A D + + ++ PDL+LLD M+P Sbjct: 1 MA-RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLD 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G L+R + +P++MLTA+G+ EDRV GL+ GADDY+ KPFS EL+AR++A++ Sbjct: 60 GFALCAELRR--LANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAML 117 Query: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR + + +D G + L E+ +L P SRE+ Sbjct: 118 RRHQREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERF 177 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFS 226 L+ VWG + RTVD HI LR +E R ++TV G GYR Sbjct: 178 LDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RIL+++D+ I E+V LE G+ AED + PDL++LD MLP G Sbjct: 2 PRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++RE T DIP++MLTA G+ +D+V G GADDY+TKPF +E++ R++A++RR Sbjct: 62 TVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRR 121 Query: 123 ISPMAVE----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 + E++ L+L P + ++ +++ EF+LLH + + S + Sbjct: 122 SDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSE 181 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +L VWG + + T+ VH+R LR LEP + ++TV G GY Sbjct: 182 ILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 97/225 (43%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VEDE + +M+ L F+ A A L DL+LLD MLP G G+ Sbjct: 22 QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ + + +PV++LTAR E D V GLE+GADDY+TKPFS EL AR KA++RR Sbjct: 82 LCQQLRNDG--QQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRH 139 Query: 124 -SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 S ++IE +GL +D S V+A + PL + EF LL F HP++V+SR QLL+ Sbjct: 140 LSAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDA 199 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 VWG + TV+ HI RLR L G +VQTV G GY+F+ Sbjct: 200 VWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 19/241 (7%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +R IL+ +D+ IRE++ LE G++ EA D A+ + DL+LLD M+P G Sbjct: 8 SRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDG 67 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Q ++ ++ T +PV+M++A+G++ D++ GL+ GADDY+TKPF+P E +AR+++ +R Sbjct: 68 YQVLRRVRE---TSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLR 124 Query: 122 RISPMAV---------------EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFF 166 R M V+ ++ L+LD + + G+EPL++ P EF++L F Sbjct: 125 RAYGMPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLF 184 Query: 167 MTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 M+HP RV++++Q+ WG V V I +LR L + TVRG GYR Sbjct: 185 MSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA-YIATVRGLGYRME 243 Query: 227 T 227 Sbjct: 244 A 244 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 132/236 (55%), Gaps = 14/236 (5%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGS 60 +ILVV+D+ I ++V L G++ +A D + + L E L +LD M+PG Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ +K ++ T IPV+ML+A+ + D++ GL GADDY+TKPF+P EL AR+KA + Sbjct: 84 GLSMVKKIRE---TSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANL 140 Query: 121 RR---------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 RR + +E+IE L ++ ++ V ++ ++ P E+ +L ++P Sbjct: 141 RRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPG 200 Query: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 RV+S + + VW + + TV VHIRRLR+ +E + ++++TV G GY+ Sbjct: 201 RVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 ++LVV+DE I +++ L+ GF A++ +A+ PD +LD M+PG G Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + L+ D P + LTA+ EDR+ GL GADDY+TKPFS +E++ R++ ++RR+ Sbjct: 91 LLNKLREAG--HDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRV 148 Query: 124 SPMAVEE--VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + EE +I + ++LD H V E +++ PTEF+LL + M + E V S+ ++L+ Sbjct: 149 AKDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILD 208 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 HVW + + V+ ++ LR+ + R++ TVRG GY Sbjct: 209 HVWNYDFGGDGNVVESYVSYLRRKI-DTKEPRLIHTVRGVGYVLR 252 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 142/225 (63%), Gaps = 7/225 (3%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSGI 62 ++LVV+DE+ +R++V L ++ + +EAE+ + AV+ + LI+LD M+P G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q K +++ +P++MLTA+ +E+D + G E G D+YI+KPFSPK LVAR++A++RR Sbjct: 65 QVCKEIRK---YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 ++E +E+ G+ +D +H V + +E+ EF+LL +F+T+ SRE++LN+ Sbjct: 122 S-IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNN 180 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + + + RT+D H+++LR + G ++T+ G GY+F Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKMGDKGD--YIKTIWGMGYKFEV 223 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ RILVV+D+ +RE + L NG+ A D A+ + PD ++LD M+P Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G++ + L+ S D+P+++LTAR +RV GL+ GADDY+ KPF+ +EL+AR++A++ Sbjct: 61 GLEVCRQLR--STGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 RRIS----PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR A + LSLDP + V G + + TEF LL + +P RV +R Sbjct: 119 RRTKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTR 178 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 ++L VWG + ++V++ LR+ E G R++ TVRG GY Sbjct: 179 SRILEEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLR 228 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 I+VV+DE IRE++ L GF+ A A+ + + PDLI+LD MLP G Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + +++E + PV+ LTAR + +D+V GL G DDY+TKPFS +E+VARI+A++RR Sbjct: 74 TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131 Query: 125 PMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 ++ +I + L ++ SH V +P+++ PTE+KLL + M + RV S+ Q+L+HV Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191 Query: 184 WGTNVYVEDRTVDVHIRRLRKAL----------EPGGHDRMVQTVRGTGYRFST 227 W + + V+ +I LRK + E +++T RG GY Sbjct: 192 WQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxalobacter formigenes RepID=C3X860_OXAFO Length = 233 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 108/224 (48%), Positives = 151/224 (67%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 ILVVEDE I E++ F ++ G++PV + A L PD++LLDWMLP SG++ Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + ++ + +PV+MLTA+ EED+V GL+ GADDYITKPFSPKELVARI A++RR Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 P + ++ ++LDP S +V +EMG +EFKLL F M +P+RV+SR QLL+ VW Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + +E+RTVDVH+ RLRKAL+ G + +V+TVRG GY S + Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK--GQENLVRTVRGMGYMLSEK 229 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M IL++EDE + ++V LE+ G+ E+ + + DL++LD MLP Sbjct: 1 MNN-ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDID 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + K L++ S D+ + MLTA+ D++ GL GAD+Y+TKP SP+EL AR+ A+ Sbjct: 60 GEEVCKILRKIS---DVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALF 116 Query: 121 RRISPMAVEEVIEMQG--LSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 RR+ E VI L +D V E + + P EF +L+ ++ +V++RE Sbjct: 117 RRVG-CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREA 175 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTRF 229 ++ +G DR++DVHI+ LRK +E + + TV GY+F + Sbjct: 176 IIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFGDKL 227 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 139/224 (62%), Gaps = 2/224 (0%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 + VVED+ + E++ F LE GF+ + + + + P++I+LD MLPG G++ Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 K L++ + +DIP++ LTA+ EEED++ G GADDYITKPFS KEL+ARI+AV+ R Sbjct: 66 AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRYK 125 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 ++++ L LD V +P+ + TEF++L + + + +++ +R++++N +W Sbjct: 126 KTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINMLW 185 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 + DRTVDVHI+ LR L G + ++T+RG GY+FS + Sbjct: 186 SYGTDINDRTVDVHIKHLRDKLGDFG--KYIRTIRGVGYKFSLK 227 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 IL+VEDE I E+V L+ G Q D ++AV ++ DLI+LD MLPG G + Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 I+ P + L+A+ DR++G GADDY+TKPF EL+AR++AV+RR Sbjct: 64 IEQ------ANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQ 117 Query: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 A E + +D +SH+V + +E P E++LL + + SRE+LL VW Sbjct: 118 RTAS--CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVW 175 Query: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 G + + RTVDVHI++LRK LE + ++TV GYR Sbjct: 176 GYDFEGDTRTVDVHIQKLRKKLE---WEDRIKTVYKLGYRLEV 215 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M I VVED+ I E++ LE + E+ + + L E P L+LLD MLPG S Sbjct: 1 MGNYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI +K LK + + IP+++L+A+ E D+V LE GADDY+TKPFS EL +RIK+V+ Sbjct: 61 GIDALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVL 120 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + ++ + +++D ++ V E + + E+K+L + + + RV +RE+LL Sbjct: 121 RRSYKV-EDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELL 179 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRF 225 N VWG + E RT+D+H++ LR + + ++T+RG GY+ Sbjct: 180 NEVWGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225 >UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P738_9FIRM Length = 224 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGG 59 M +ILV EDE IR +V L + GF+ VEA D AV + L++LD M+P Sbjct: 1 MDNKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKK 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G + ++ +S ++P++MLTAR E+D V G GAD+YI KPFSP LV R+K + Sbjct: 61 DGYDACREIRGKS---NVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNL 117 Query: 120 MRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 +RR S + +V G+ + V + + P EF LL++ + + V +R+Q+ Sbjct: 118 LRRTSSNDMSDV-SAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQI 176 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 + VW + +DRTVD HI+ LR L + + + TVR GY+F Sbjct: 177 ICTVWDMDYAGDDRTVDTHIKCLRAKLG--PYAKCIVTVRKVGYKFE 221 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 11/235 (4%) Query: 1 MA-RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 M ++IL+VED+ I +++ LE+ GF D A + DL+LLD MLPG Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 G Q + ++ S P++MLTA+G+ E++V+GL GADDY+TKPF EL+ARI A+ Sbjct: 61 DGYQVCQKIRETSY---TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAM 117 Query: 120 MRRISPMAVE------EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 +RRI E +E L D + + E+ + + E +LL + M +P +V Sbjct: 118 LRRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQV 177 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGYRFST 227 + RE+L+ +WG + EDR +D++I+RLRK L+ ++TV G GY+F Sbjct: 178 FKREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 136/244 (55%), Gaps = 18/244 (7%) Query: 1 MARR----ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML 56 M++ I+VV+DE IRE++ L GF+ A AV + P+LI++D ML Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 PGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116 P G + +++ + +PV+ LTAR + +D++ GL G DDY+TKPFS +E+VARI Sbjct: 61 PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KAVMRRISPMAVEE-VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYS 175 +A++RR E +I++ L ++ SH V P+E+ PTE+KLLH+ M + RV S Sbjct: 119 RAILRRTQEPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLS 178 Query: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKAL------EPGGHDR----MVQTVRGTGYRF 225 + Q+LNHVW + + V+ +I LRK + + G + +++T RG GY Sbjct: 179 KSQILNHVWQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238 Query: 226 -STR 228 + Sbjct: 239 REPK 242 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILVV+D+ I E++ LE + F A D + A + ++LD M+PG +G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + ++ ES +P++ L+AR ++ D++RGL G DDYI K SP E+VAR+KAV+RR Sbjct: 65 ELCRRIRAESP---VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRR 121 Query: 123 --ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 E V++ L L+ ++ V+ + + P EF+LL F HP V++ +QLL Sbjct: 122 SATRRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLL 181 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 W + + T+ VH+ RLR+ +E + + + V G GYRF R Sbjct: 182 AKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEGR 228 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A ++LVV+D++ I E++ + L + G+ + A + A++ PDLILLD M+P G Sbjct: 10 APKVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDG 69 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ + L++ ++ ++ LTAR EE V E GADDYITKP P+ L++RI A+ R Sbjct: 70 IETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFR 129 Query: 122 R-ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLE-MGPTEFKLLHFFMTHPERVYSREQL 179 R + IE+ LS++ ++ V G E + EF+LL F P +V+SR++L Sbjct: 130 REAQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDEL 189 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L +WG ++YV +RTVDVHIR+LR+ L ++T++G GY FS Sbjct: 190 LQKIWGADIYVLERTVDVHIRKLREKLGD----TYIKTLKGVGYMFSN 233 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 IL+VEDE ++ ++ L + GF+ + A+ + A++ L+ DL ++D M+P G Sbjct: 2 PTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGF 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 F+K L+ S +PV+ LTAR +E+DR+ GL G DDY++KPFS EL+ARI+AV+RR Sbjct: 62 DFVKKLRETST---LPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRR 118 Query: 123 ISPMA--------VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 E++ ++G+ L+ + V + P+ + EF LL F H +V+ Sbjct: 119 TYQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVF 178 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +RE LL VWG + +RTVD HI+ LR L+P G+ ++QTV G GY+ Sbjct: 179 TREHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN--VIQTVWGIGYKL 227 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 9/229 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++ILV++DE IR++ VL++ GFQ AE+ + +LN PDL+LLD MLP SG Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K + ++S +IPV+M++A+ E D+V GLE GA+DYITKPF +EL+ARIK V+RR Sbjct: 62 DLCKEIVKQS---NIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRR 118 Query: 123 ISPMAVE-----EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + L ++P + V + + E+ +L P+++++R+ Sbjct: 119 YEHNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 +LL VWG + + R+VD+ I RLRK +E + V+T+ G GY+ Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A +L+VEDE + V L + G++ E ++ + DL+LLD LP SG Sbjct: 4 APHLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSG 63 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 ++ + L+ ++P++MLTA EDRVRGL GADDY+ KPF+ EL+ARI+A++R Sbjct: 64 LEVCERLRLHR--PELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLR 121 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R+ + +E L LDP + E +++ PTEF LL F M + SR+ + Sbjct: 122 RVDRPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQ 181 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VWG + +DV++ +R+ L+ G + ++TVRG GYR++ Sbjct: 182 EVWGHDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTA 227 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 131/232 (56%), Gaps = 9/232 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 + IL+++DEA IRE++ L+ GF EA + A+ + DL++ D M+P G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + +K ++ S ++P + L+A+ ++ D++ GL+ GADDY+ KPF+P E+V+R++A+ RR Sbjct: 72 ELLKKIRHIS---EVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR 128 Query: 123 I-----SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + E+I++ + LD S ++ + E+ EFK+L M H RV+++ Sbjct: 129 MDVFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKA 188 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFSTR 228 + HVWG ++ + V+I +LR+ +E + T+RG GYRF + Sbjct: 189 SIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEKK 240 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 15/236 (6%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +L EDE I V L++ GF + D A + + D+ILLD M+PG G+ Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 +K+L++ R+ PV++LTAR E +DR++GL GADDYI KPF +EL+ARI AV+RR Sbjct: 61 FILKNLRQVG--RNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEP------------LEMGPTEFKLLHFFMTHP 170 + ++ + LD + V E +E+ EF LL + M P Sbjct: 119 SAGEQ-PNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSP 177 Query: 171 ERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 RV++R Q+L HVWG + VDV I+RLRK ++ G++R +++VRG GYRF Sbjct: 178 GRVFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFR 233 >UniRef50_A7GLY2 Two component transcriptional regulator, winged helix family n=9 Tax=Firmicutes RepID=A7GLY2_BACCN Length = 220 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV+ED+ I+E++ L + A D + Q N+ DLILLD M+P + Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + ++ +S +IP+++LTA EE+D+++G + G DDYITKPFS + R++AV+ Sbjct: 61 GFEVANIIRNQS---NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + + + + +D +++V + + + EF++L + + +V +RE ++ Sbjct: 118 RRSYGERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIV 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 VWG Y E R +D HI+ +RK L + ++TV+G GY+ Sbjct: 178 ERVWGYEPYGETRIIDTHIKNIRKKL----NTPYIKTVKGIGYKID 219 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 7/224 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVV+D+ I +V EQ F A + L PDLI+LD MLP SG+ Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 IK LKR+ +IPV+ LTAR + D + GLE GADDYITKPF+P+ L+ARIKAV RR Sbjct: 61 DVIKKLKRK--YEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRR 118 Query: 123 ISPMAVE-EVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 + V+++ + +D S+ ++ + E+ EF+LL + +P +V++R+++L+ Sbjct: 119 YEMGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILD 178 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 VWG + + + RTVDVHI +LR+ + ++TVRG GY+ Sbjct: 179 RVWGMDFFGDFRTVDVHISKLREKIGS----EFIKTVRGVGYKL 218 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RILVVEDE I + +C LE G+ A +A++ +++ DL++LD MLP G+ Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Q ++ ++ PV++L+ARG +DRV+GLE GADDY+ KPF+ EL+AR++A++RR Sbjct: 61 QVLEKMRSRKAGP--PVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 E +++ L+LD +V G E +++ P EF +L + M + R SR ++ H Sbjct: 119 --GQPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEH 176 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + VDV+IR LR ++ +++QTVRG GY Sbjct: 177 VWDMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEA 221 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+++DE + + + EQ GF A D + A+ D I+LD MLP G Sbjct: 16 TMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDG 75 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I ++++S D+ ++MLTA+ + D++ GLE GADDY+TKPF+ +EL+AR++ ++R Sbjct: 76 ITLCNRIRQQS---DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIR 132 Query: 122 RISPMA-VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 R ++ + + L +D S V GEE + + P EF +L + + RV+ RE++ Sbjct: 133 RQEKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIF 192 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 VWG Y + RT+DVH++ LR+ L+ M++T G GY F Sbjct: 193 QLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ RILVVEDEA I + + L + G+ AED LN DL++LDW LP Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GIQ ++ ++++ T PV+ LTAR +RV GL+ GADDY+TKPF+ EL+AR++A++ Sbjct: 61 GIQLLRRFRQKNRT--TPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR A V+E + D + RV G PL++ EF LL FF+ +P +V SR ++ Sbjct: 119 RRPGQ-ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIY 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 + VW + T++VH++ LR LE G R++QT+RG GY T Sbjct: 178 DTVWDDSYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLET 223 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 12/234 (5%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++L++EDE + + L + G+ A D S + E LI+LD MLPG +GI Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 K L+++ +T P++MLTA G E+ V GL++GADDY+ KPF EL+ARI++++RR Sbjct: 61 AVCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRR 118 Query: 123 IS----------PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPER 172 + + V+++ L LD + + + + TE++LL + M +P+R Sbjct: 119 NNDTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKR 178 Query: 173 VYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 V SR ++L +VWG + + + VDV++ LRK + ++QTV G GY Sbjct: 179 VLSRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLK 232 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 138/232 (59%), Gaps = 11/232 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGS 60 +IL+V+D+ I +++ G++P+ A + A+ +L PD L++LD M+P + Sbjct: 1 MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKL-NTMPDISLVILDLMMPEMN 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ I+ ++++S IP+++L+A+ + D+++GL TGADDY+TKPF+P E++AR+K+++ Sbjct: 60 GMDVIRQVRKDS---SIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLL 116 Query: 121 RRISPM---AVEEVIEMQGLSLDPTSHRV-MAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR +V+ + L ++ SH V +P+++ EF +L+ +HP RV+S Sbjct: 117 RRSENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSA 176 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 + + VW V +TV VH+ LR +E G +++++TV G GY+ Sbjct: 177 DDIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVEN 228 >UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYV2_9CLOT Length = 232 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 98/228 (42%), Positives = 145/228 (63%), Gaps = 3/228 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 + ++L+++DE I E++ F LE +G++ + + D + E PDLILLDWMLP SG Sbjct: 5 SEKVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 I+ +K +++++ + IPV+MLTA+ E+D+V GLE GADDYITKPFS KEL+ARI +VMR Sbjct: 65 IEVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMR 124 Query: 122 RISPM--AVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R E + L L+ T H V ++ +++ EF+LL + + +V SR L Sbjct: 125 RYGMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFL 184 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L+ +WG Y E RTVDVHIR LRK LE G ++ ++T+RG GY+ Sbjct: 185 LDEIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKID 232 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 132/221 (59%), Gaps = 3/221 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 RILV EDE + E++ L + G + + + A++ D +LLD MLPG G Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + + L+ + R +P++MLTAR E D +RGL+ GADDY+TKPFS EL+AR++AV RR Sbjct: 61 EVARRLRHKG--RQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 P + + L+LD SH V G+ P+ + TEF LL M + R SR+ L+ + Sbjct: 119 TGP-HRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGN 177 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VWG + +E+ T+D IR LR+ ++ GH +++QTVRG GY Sbjct: 178 VWGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 25/245 (10%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++ILVVEDE I + + F L + F+ A + +SA+ E P L+LLD MLP SG Sbjct: 3 KKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K + ++S +VMLTAR + D++ G+E GADDYITKPF +E+ ARI A+ R Sbjct: 63 FELCKIMSQKSY-----IVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFR 117 Query: 122 RISPMAVEEVIE--------------------MQGLSLDPTSHRVMAGEEPLEMGPTEFK 161 R+S E +++ + V+ + + + EF Sbjct: 118 RVSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFD 177 Query: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGT 221 LL + + V++R+QLLN VWG + Y + RTVDVHIRRLR L + +V+TV G Sbjct: 178 LLSYLYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKENSIVETVFGV 237 Query: 222 GYRFS 226 GY Sbjct: 238 GYVIR 242 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 139/228 (60%), Gaps = 4/228 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M ILV++DE I E++ LE G+ ++A A+ + +E PDL++LD MLP S Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + +++ES ++P++MLTA+ E+ + G G+DDYITKPFSPK+LVA++ AV+ Sbjct: 61 GENVCERIRKES---EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 +R+ E +I L +D + +V + + + +E+K+L +P +++SRE+L+ Sbjct: 118 KRVKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELM 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 +++ N+ + DR +D HI+ +R L+ + ++T+RG GYRF+ Sbjct: 178 DYISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 7/230 (3%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M+ +IL+V+D+ I E + L + G++ + + + A+N++ DLIL+D M+P Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + IK ++R +IP++ LTA+ ++D+++G +G DDYITKPF EL R+ A++ Sbjct: 61 GFEAIKRIRR---LTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAIL 117 Query: 121 RRISP---MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 +R+S E++I+++ L L+ H + GE+ + + P EF +L + RV+ Sbjct: 118 KRVSTGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSS 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFS 226 +L VWG D ++ HIR LR+ L + + ++TV G GY+ Sbjct: 178 ELYERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIE 227 >UniRef50_D1B7S7 Two component transcriptional regulator, winged helix family n=2 Tax=Synergistaceae RepID=D1B7S7_THEAS Length = 228 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILVVEDE IRE++ + G+ + A D D AV+ PDLI+LD MLP Sbjct: 1 MRWRILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMD 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + + ++ E R +PV+MLTAR +E D V GLE GADDY+ KPFS EL+AR++A + Sbjct: 61 GWEVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHL 120 Query: 121 RRISPMAVEEV-IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 RR EV I M L+L+P V+ PL++ PTE +LL M+ R+ S+E++ Sbjct: 121 RRSDSPQGGEVQISMGNLTLEPQG-DVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEI 179 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 L +WG +V + RTVDV++ RLR+ LE G ++TVRG GYR Sbjct: 180 LGKIWG-HVGSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYR 223 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 6/229 (2%) Query: 1 MA-RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 MA ++IL+VEDE I V LE G+ + D + + + DLI+LD MLP Sbjct: 1 MACKKILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSL 60 Query: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 +G++ ++ L++ S +IPV+MLTA+ E D+V GL+ GA+DY+TKPF+ +EL+ARI+ V Sbjct: 61 NGMEVLRRLRQIS---EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVV 117 Query: 120 MRRISPMAVEEVIE--MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 + S V+ L +D H V +++ EF LL + M + + SRE Sbjct: 118 FKHKSNNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRE 177 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +L VWG + + VDV+IR LR ++ + + + T+RG GY+F Sbjct: 178 NILEKVWGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFR 226 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 A IL+ +D+ + ++ + F A D A+ +L E PD+++LD M+PG G Sbjct: 3 ANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + + ++ DIP++ L+A+ +E DR+ GL GADDY+ KPF +EL+AR+K+ +R Sbjct: 63 FEVCRRARQF---TDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLR 119 Query: 122 RISPMAVEEV--IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 R + +V E++ L +D V + + + PTEF LL + P+RV+SR QL Sbjct: 120 RRRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQL 179 Query: 180 LNHVWGTNVY-VEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 L G Y +RT+D HIR LRK LEP + TV G GY+F Sbjct: 180 LEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQ 228 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +LVVEDE I ++V L ++GF D + + P +LD LPG +G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 + L+ PV+ LTAR +E DR+ GLE GADDY+TKPFSP+ELVAR++AV+RR Sbjct: 71 CRRLREAGDW--TPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTV 128 Query: 125 PMAV--EEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + E V + ++LDPT V EP+++ TEF LL M P RV++R +LL Sbjct: 129 GVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAA 188 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGY 223 VWG + RTVDVH+ ++R L G +++T RG GY Sbjct: 189 VWGYAAHSSTRTVDVHVAQVRAKLG--GAAGVIRTHRGVGY 227 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS 60 +IL++EDE + + LE+ G+ A D + A + DL++LD MLP Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 GI K L+ ++ P++MLTA+ + ED++ GLE+GADDY+ KPFS +EL+ARI+A++ Sbjct: 61 GISLCKDLRAKNFQA--PILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALL 118 Query: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 RR + V++++ +SLD S RV G+ + + EF +L + M + R+ S+EQ++ Sbjct: 119 RRPKNLM-PTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQII 177 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +HVWG V+ HI+ LRK LE + +++T+RG GYR Sbjct: 178 SHVWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ILV +DE I +++ LEQ GF V ++ + +L P LI+LD MLP G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ S +P++MLTA+ +EDR+RGL+ GADDY+TKPF+P E+VAR++A++RR Sbjct: 65 EVCMAVRARSA---VPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRR 121 Query: 123 I---SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 P+A L +D S V G E+ TE+KLL HP RV+SRE+L Sbjct: 122 TMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREEL 181 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRF 225 + V+G + + RT+D H++ LR +E +QTV G GYRF Sbjct: 182 IERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 +IL+VEDE + + LE + D + + DLILLD MLP +G++ Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 + +++ P++++TA+ + D+V GL+ GADDYI KPF +EL+ARI+A++RR Sbjct: 63 ICRQIRQNQT---TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR- 118 Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 + +I+++G+ +D + +V +PL++ TE+ LL + + V REQ++ V Sbjct: 119 --QPQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDV 176 Query: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYR 224 WG + VE VDV+IR LR L+P G D+ ++TVRG GY Sbjct: 177 WGYDTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 136/227 (59%), Gaps = 9/227 (3%) Query: 1 MARRI--LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG 58 M ++ +VVED+ +R ++ LE G+ V E A+ + P+L++LD MLP Sbjct: 1 MENKVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD 60 Query: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118 G + ++L++ + D+ ++MLTA G ++D++ G E GADDY+TKPF +EL+ARIKA Sbjct: 61 MDGYEVAQNLRK--LKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKA 118 Query: 119 VMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 ++RR +++ + I+ L + V+ + +++ TEF LL + + +RV S+E+ Sbjct: 119 LLRR-KNISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEE 177 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 +L+ VWG + Y D TV+V++ +RK L +++T+RG GY+ Sbjct: 178 ILDAVWGIDYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 144/229 (62%), Gaps = 9/229 (3%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 +++LVV+DE I E++ F LE+NG+Q ++ + +L + PDL++LD MLPG G Sbjct: 9 GQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGG 68 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + K +K + +P++M+TA+ E + V GLE GADDY+ KPFS +EL+AR+++V+R Sbjct: 69 MDLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 122 RISPMAVEEV----IEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177 R EE I + + L+ +H+ +++ E+K+L+ FMT+P ++R+ Sbjct: 126 RTKEGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRD 185 Query: 178 QLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 +LL+ VWG ++YV DR VDV+I+RLR L ++T+RG GYRF+ Sbjct: 186 KLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFN 232 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 8/226 (3%) Query: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 +L+V+D+A +R ++ LE G++ + + ++ P +++LD M+PG G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 ++ L+ S ++PV+MLTA+GE+ DR+ GLE GADDYI+KPF+P+EL+ARIKAV+RR Sbjct: 67 LRDLRPHS---NVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAK 123 Query: 125 PMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLL 180 I + G+ L ++ + LE+ TEFKLL M +P R +R+ L+ Sbjct: 124 GPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 181 NHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRF 225 VWG + DR++DVHI +LR +P H+ ++TV GTGY F Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 ++L+VEDE+ I E++ L + G++ + D V+ + +ILLD MLP G Sbjct: 3 NEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDG 62 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + +++ S D+P++M+TA+ EE DR+ G E G DDYI KPFSP+E+VAR+ AV+R Sbjct: 63 KTVCREVRKFS---DVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLR 119 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R + ++V+ + + L+ TS L + P+EF + + P RV++R QL+ Sbjct: 120 RTFKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIE 179 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 V G N +RT+D HI+ LRK + ++++Q+ G GY+ Sbjct: 180 KVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 135/228 (59%), Gaps = 8/228 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +ILVV+DE+ IR ++ LE G++ + A D A+ + NE PD+++LD MLP G Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ + + RDIPV+MLTA+ + D++ GL+ GADDY+TKPF+ EL+ R+K + RR Sbjct: 78 ELLRLFREK--DRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 135 Query: 123 ISPMA---VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 + EVIE +++ P +V + +++ EF L F+++P+RV+ R++L Sbjct: 136 VKKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDEL 195 Query: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 L VWG R VD+ ++RLRK L G ++T+ G GY+ Sbjct: 196 LEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGE--YIKTIYGVGYKLDC 241 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 17/239 (7%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGG 59 + +L++ED+ + E++ L N ++ A + L DL++LD MLP Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 60 SGIQFIKHLKR--ESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 G+Q + +++ +S ++MLTA+G+ DRV GLE GADDY++KPF P+EL+ARI+ Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 118 AVMRRIS---PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 AVMRR E+ + L + P SH V +EP+ + +F+LLH+F TH +V Sbjct: 128 AVMRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVL 187 Query: 175 SREQLLNHVW-----GTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 SREQL W + DR +DVHI RLR +E + + TVRG GY+F+T Sbjct: 188 SREQL----WHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 242 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 129/237 (54%), Gaps = 15/237 (6%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M RILV +D A IRE++ +L G++ +EA+D + + + DLI+LD M+P + Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G Q L+ T ++P++ LTA+G + D+ G +GADDY+ KPFS EL AR+KA++ Sbjct: 60 GYQTCLKLRE---TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALL 116 Query: 121 RRISP---------MAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPE 171 RR + E+ + M GL+L + +E+ EF +L M +P+ Sbjct: 117 RRYQVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPK 176 Query: 172 RVYSREQLLNHVWGTNVYVE-DRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFS 226 +++S EQL W Y + T+ VHIR LRK +E + ++T+ G GYRF Sbjct: 177 QIFSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 118/233 (50%), Gaps = 19/233 (8%) Query: 7 VVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIK 66 VVEDE I + V L G+ A D S V PD+++LD MLPG G++ + Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 67 HLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS-- 124 ++ R +PV+MLTAR +E D++ GL GADDY+TKPFS +ELVAR+ ++RR+ Sbjct: 82 RVQA---ARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERA 138 Query: 125 ------PMAVEEVIEM----QGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 174 P E + L +D RV + + PTEF LL P V Sbjct: 139 RALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVL 198 Query: 175 SREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 +RE+LL VW RTVD H++ LR+ L +V+TV G GY F Sbjct: 199 TREKLLEEVWDWADASGTRTVDSHVKALRRKLGAD----LVRTVHGVGYAFEP 247 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 141/232 (60%), Gaps = 11/232 (4%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGS 60 +IL+V+D+ I E++ ++ G++P++A A+ +L PD L++LD M+P S Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTN-PDIALMILDIMMPNMS 59 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G+ +K ++++S IP+++++A+ + D+++GL TGADDY+TKPF+P E++AR+K+++ Sbjct: 60 GMDVVKEVRKDS---QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLL 116 Query: 121 RRISPM---AVEEVIEMQGLSLDPTSHRV-MAGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 RR + +V+E+ L++ SH V + +++ EF +L+ +HP RV+S Sbjct: 117 RRSQNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSA 176 Query: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH-DRMVQTVRGTGYRFST 227 +++ VW V +TV VH+ LR +E +++++TV G GY+ Sbjct: 177 DEIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA 228 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 8/230 (3%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 ++I VV+DE I E++ LE +G+ A + A+N N+ PDLI+LD MLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + L++ S +P++MLT + +EED + GL+ GADDY+TKPFSP++LVAR+KA++RR Sbjct: 70 DICEMLRKRS---KVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 126 Query: 123 ISPMAVEE----VIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 E+ + L ++ ++ V + + P E+ +L + +P ++++RE+ Sbjct: 127 TEDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGG-HDRMVQTVRGTGYRFST 227 L+ G N DRT+D HI+ LR +E + T+RG GY+F + Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 +IL+VEDE + + L + A++ +N D+I++D M+P GI Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 + ++ + T PV++LTA+ +D+V L TGADDY+ KPF +EL ARI A+ RR Sbjct: 61 SALAQMRNDGNT--TPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARR 118 Query: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 + A + I + L+++ V E + + EF LL + ++ V SR+Q+L+H Sbjct: 119 NARHAQND-IHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDH 177 Query: 183 VWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 VW + +DV+I+ LRK ++ + +++QTVRG GY T Sbjct: 178 VWEYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKT 222 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 R+LVVED+A I V L+Q G+ A D D+ + D ++D MLP G Sbjct: 5 TMRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDG 64 Query: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 + ++ L+ E +PV+ L+AR EDRV+GL+ G DDY+TKPF+ EL AR++A++R Sbjct: 65 LSLVRRLRAER--SAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIR 122 Query: 122 RISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLN 181 R S + ++LD S V G +P+E+ P EF LL + + H R ++ +L Sbjct: 123 RASRSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILE 182 Query: 182 HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 HVW + + VDV + RLR + ++T+RG GY F Sbjct: 183 HVWDYSFDPQTNVVDVLMSRLRSKI--DPDKTRIETLRGVGYVFKA 226 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 14/233 (6%) Query: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 M +IL++EDE I+ ++ + + GF+ + ++ E P L++LD MLP S Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60 Query: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 G + L + + ++MLTAR + D+V GLE GADDYITKPF +E VAR+K + Sbjct: 61 GFDVCRELNKLNAN----IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVAL 116 Query: 121 RR-------ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERV 173 RR + V++ + + + S +V EE + + P E +LL +F+ +P Sbjct: 117 RRKDKFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIA 176 Query: 174 YSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226 SR+Q+L+ VWG + + RTVDVH+RRLR+ L ++ +++T+ G GY F Sbjct: 177 LSRDQILDGVWGDEYFGDFRTVDVHVRRLRQKLN---NEEIIETIFGLGYMFK 226 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.220 0.878 Lambda K H 0.267 0.0673 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,474,342,032 Number of Sequences: 3077464 Number of extensions: 179321791 Number of successful extensions: 499455 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 37226 Number of HSP's successfully gapped in prelim test: 14675 Number of HSP's that attempted gapping in prelim test: 389340 Number of HSP's gapped (non-prelim): 60805 length of query: 229 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 105 effective length of database: 658,790,820 effective search space: 69173036100 effective search space used: 69173036100 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 92 (39.3 bits)