BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (336 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruv... 466 e-130 UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mits... 418 e-115 UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruv... 403 e-111 UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruv... 400 e-110 UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruv... 392 e-107 UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruv... 382 e-105 UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruv... 377 e-103 UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruv... 372 e-101 UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruv... 371 e-101 UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruv... 370 e-101 UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruv... 363 3e-99 UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruv... 360 3e-98 UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruv... 355 9e-97 UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonq... 352 1e-95 UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruv... 340 4e-92 UniRef50_B3H0C7 Holliday junction ATP-dependent DNA helicase Ruv... 334 2e-90 UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruv... 330 6e-89 UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruv... 329 1e-88 UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruv... 328 2e-88 UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruv... 323 7e-87 UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 320 5e-86 UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruv... 318 2e-85 UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 316 8e-85 UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cell... 315 1e-84 UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Plan... 314 2e-84 UniRef50_Q0W1R6 Holliday junction resolvasome, helicase subunit ... 307 3e-82 UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruv... 283 8e-75 UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruv... 271 2e-71 UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruv... 243 7e-63 UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Copr... 232 1e-59 UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n... 222 2e-56 UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 219 9e-56 UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruv... 218 2e-55 UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Myco... 215 2e-54 UniRef50_Q8EWC6 Holliday junction DNA helicase n=1 Tax=Mycoplasm... 205 2e-51 UniRef50_P75242 Holliday junction ATP-dependent DNA helicase ruv... 201 3e-50 UniRef50_B3H0C6 Holliday junction ATP-dependent DNA helicase Ruv... 198 2e-49 UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Myco... 193 6e-48 UniRef50_B1AJ89 Holliday junction ATP-dependent DNA helicase ruv... 184 4e-45 UniRef50_Q6F144 Holliday junction DNA helicase n=3 Tax=Mollicute... 166 1e-39 UniRef50_UPI00016C564A Holliday junction DNA helicase RuvB n=1 T... 132 1e-29 UniRef50_A4NW27 Holliday junction DNA helicase B n=1 Tax=Haemoph... 98 5e-19 UniRef50_C5M4W5 Predicted protein n=1 Tax=Candida tropicalis MYA... 82 3e-14 UniRef50_B9WCE8 AAA family ATPase, putative n=1 Tax=Candida dubl... 80 9e-14 UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desul... 79 2e-13 UniRef50_Q0EY57 ATPase n=1 Tax=Mariprofundus ferrooxydans PV-1 R... 75 3e-12 UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5... 73 1e-11 UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepI... 72 2e-11 UniRef50_A5DZ06 Putative uncharacterized protein n=1 Tax=Loddero... 72 2e-11 UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campyl... 72 2e-11 UniRef50_A5GNS9 ATPase related to the helicase subunit of the Ho... 72 3e-11 UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus cal... 70 1e-10 UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepI... 69 2e-10 UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax... 69 2e-10 UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collins... 69 2e-10 UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellul... 68 5e-10 UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q... 68 6e-10 UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyo... 67 6e-10 UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacte... 67 9e-10 UniRef50_A5V6U8 Recombination protein MgsA n=1 Tax=Sphingomonas ... 67 1e-09 UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacill... 67 1e-09 UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH... 67 1e-09 UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonprote... 66 2e-09 UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria Rep... 65 3e-09 UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteri... 65 3e-09 UniRef50_Q6BUL9 DEHA2C09570p n=2 Tax=Debaryomyces hansenii RepID... 65 4e-09 UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1... 64 5e-09 UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6... 64 6e-09 UniRef50_B1HVA3 Holliday junction ATP-dependent DNA helicase ruv... 64 7e-09 UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actin... 64 8e-09 UniRef50_Q14MF5 Hypothetical dna helicase probably c-terminal tr... 64 8e-09 UniRef50_Q043K3 Helicase subunit of the Holliday junction resolv... 64 9e-09 UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/r... 64 1e-08 UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bact... 63 1e-08 UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A... 63 1e-08 UniRef50_A3LTW2 Replication factor ATPase n=1 Tax=Pichia stipiti... 63 1e-08 UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA2... 63 2e-08 UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis AT... 63 2e-08 UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI 62 2e-08 UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardne... 62 3e-08 UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4... 62 3e-08 UniRef50_D1B930 AAA ATPase central domain protein n=2 Tax=Synerg... 62 3e-08 UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30... 61 4e-08 UniRef50_C9KPY4 Replication-associated recombination protein A n... 61 5e-08 UniRef50_D2LDV0 Holliday junction DNA helicase RuvB domain n=1 T... 61 5e-08 UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillo... 61 6e-08 UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-lik... 61 7e-08 UniRef50_Q4SLJ4 Chromosome 15 SCAF14556, whole genome shotgun se... 61 7e-08 UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 R... 60 8e-08 UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria Rep... 60 1e-07 UniRef50_C4YKF6 Putative uncharacterized protein n=2 Tax=Candida... 60 1e-07 UniRef50_Q236J5 ATPase, AAA family protein n=1 Tax=Tetrahymena t... 60 1e-07 UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase ... 60 1e-07 UniRef50_B0EGY1 ATPase WRNIP1, putative n=2 Tax=Entamoeba RepID=... 60 1e-07 UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulf... 60 1e-07 UniRef50_A9ULW2 Putative uncharacterized protein n=1 Tax=Xenopus... 59 2e-07 UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacte... 59 2e-07 UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria Rep... 59 2e-07 UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endo... 59 2e-07 UniRef50_A5DKE6 Putative uncharacterized protein n=2 Tax=Pichia ... 59 2e-07 UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria... 59 2e-07 UniRef50_A7C725 Holliday junction ATP-dependent DNA helicase ruv... 59 2e-07 UniRef50_A5DW03 Putative uncharacterized protein n=1 Tax=Loddero... 59 3e-07 UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4... 59 3e-07 UniRef50_P0AAZ6 Replication-associated recombination protein A n... 59 3e-07 UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida... 59 3e-07 UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IX... 59 3e-07 UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU 59 4e-07 UniRef50_C4Y4G1 Putative uncharacterized protein n=1 Tax=Clavisp... 58 4e-07 UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase s... 58 5e-07 UniRef50_C4Z9V9 Holliday junction DNA helicase B n=1 Tax=Eubacte... 58 5e-07 UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopob... 58 6e-07 UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Prote... 58 6e-07 UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilag... 58 6e-07 UniRef50_UPI0001743224 Holliday junction DNA helicase B n=1 Tax=... 57 7e-07 UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase int... 57 7e-07 UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea s... 57 8e-07 UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba Re... 57 9e-07 UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K... 57 1e-06 UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6B... 57 1e-06 UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrot... 57 1e-06 UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selen... 56 2e-06 UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria Rep... 56 2e-06 UniRef50_C7M3A0 AAA ATPase central domain protein n=1 Tax=Acidim... 56 2e-06 UniRef50_O14325 Uncharacterized AAA domain-containing protein C1... 56 2e-06 UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1... 56 2e-06 UniRef50_O34528 Uncharacterized AAA domain-containing protein yr... 56 2e-06 UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacter... 56 2e-06 UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriob... 56 2e-06 UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR 56 2e-06 UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrob... 56 2e-06 UniRef50_C4LVU1 AAA family ATPase, putative n=2 Tax=Entamoeba Re... 56 2e-06 UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycet... 56 2e-06 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 55 2e-06 UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusim... 55 3e-06 UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Ta... 55 3e-06 UniRef50_B3PM47 ATPase, related to the helicase subunit of the H... 55 3e-06 UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria Re... 55 4e-06 UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Am... 55 4e-06 UniRef50_C5NXY2 Replication-associated recombination protein A n... 55 4e-06 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 54 6e-06 UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 T... 54 6e-06 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 54 6e-06 UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemol... 54 6e-06 UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN 54 6e-06 UniRef50_C1SKW4 AAA ATPase n=1 Tax=Denitrovibrio acetiphilus DSM... 54 7e-06 UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepI... 54 8e-06 UniRef50_Q07844 Ribosome biogenesis ATPase RIX7 n=17 Tax=Dikarya... 54 1e-05 UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacte... 54 1e-05 UniRef50_C4XEG6 Putative uncharacterized protein n=1 Tax=Mycopla... 54 1e-05 UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodom... 53 1e-05 UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacterio... 53 1e-05 UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase int... 53 1e-05 UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacter... 53 1e-05 UniRef50_UPI00015B415D PREDICTED: similar to werner helicase int... 53 1e-05 UniRef50_B7PTW3 Werner helicase interacting protein, putative (F... 53 2e-05 UniRef50_B2GIA8 Putative uncharacterized protein n=2 Tax=Bacteri... 53 2e-05 UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacte... 52 2e-05 UniRef50_C1GPB8 Ribosome biogenesis ATPase RIX7 n=2 Tax=Paracocc... 52 2e-05 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 52 2e-05 UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB 52 3e-05 UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusob... 52 3e-05 UniRef50_B7ZX89 Putative uncharacterized protein n=2 Tax=Zea may... 52 3e-05 UniRef50_C2GHX2 Crossover junction endodeoxyribonuclease n=4 Tax... 52 3e-05 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 52 3e-05 UniRef50_D0MTY0 Ribosome biogenesis ATPase RIX7 n=2 Tax=Phytopht... 52 3e-05 UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms R... 52 4e-05 UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv... 52 4e-05 UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosa... 52 4e-05 UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax... 52 4e-05 UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacte... 51 5e-05 UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, puta... 51 6e-05 UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharo... 51 7e-05 UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Therm... 51 7e-05 UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyc... 50 8e-05 UniRef50_C4Y1S6 Putative uncharacterized protein n=1 Tax=Clavisp... 50 9e-05 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 50 1e-04 UniRef50_A9F8L0 ATP-dependent protease La n=3 Tax=Proteobacteria... 50 1e-04 UniRef50_Q8ZW03 MoxR related protein n=1 Tax=Pyrobaculum aerophi... 50 1e-04 UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 T... 50 1e-04 UniRef50_C4M7P3 ATPase, AAA family protein n=2 Tax=Entamoeba Rep... 50 1e-04 UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacter... 50 1e-04 UniRef50_B6K3Z7 Cell division cycle protein n=1 Tax=Schizosaccha... 50 1e-04 UniRef50_B9QC65 Peroxisomal-type ATPase, putative n=3 Tax=Toxopl... 50 2e-04 UniRef50_A2SSI7 AAA family ATPase, CDC48 subfamily n=8 Tax=Eurya... 49 2e-04 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 49 2e-04 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 49 2e-04 UniRef50_Q210S4 Vesicle-fusing ATPase n=3 Tax=Proteobacteria Rep... 49 2e-04 UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-lik... 49 2e-04 UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera ... 49 2e-04 UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacter... 49 2e-04 UniRef50_A6URF6 AAA family ATPase, CDC48 subfamily n=4 Tax=Eurya... 49 3e-04 UniRef50_A3CTB6 ATPase associated with various cellular activiti... 49 3e-04 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 49 3e-04 UniRef50_D0N5D3 Peroxisome biogenesis factor, putative n=1 Tax=P... 49 3e-04 UniRef50_D1VIN0 AAA ATPase central domain protein n=1 Tax=Franki... 49 3e-04 UniRef50_O05209 VCP-like ATPase n=10 Tax=Euryarchaeota RepID=VAT... 49 3e-04 UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID... 49 3e-04 UniRef50_Q58556 Cell division cycle protein 48 homolog MJ1156 n=... 49 3e-04 UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB 49 3e-04 UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 ... 49 3e-04 UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 T... 49 3e-04 UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID... 49 4e-04 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 48 4e-04 UniRef50_C6A499 Pk-cdcA protein n=28 Tax=Euryarchaeota RepID=C6A... 48 4e-04 UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK... 48 4e-04 UniRef50_A1SUB2 Cell division control protein 48 ATPase of AAA f... 48 5e-04 UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta Rep... 48 5e-04 UniRef50_Q4PF17 Putative uncharacterized protein n=4 Tax=Eukaryo... 48 5e-04 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 48 5e-04 UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696... 48 5e-04 UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 T... 48 6e-04 UniRef50_C0SG10 CdcH n=2 Tax=Onygenales RepID=C0SG10_PARBP 48 6e-04 UniRef50_A2QW62 Function: WHIP of M. musculus is involved in agi... 48 6e-04 UniRef50_A6URV8 Replication factor C large subunit n=12 Tax=Meth... 48 6e-04 UniRef50_Q8TY20 ATPase of the AAA+ class n=3 Tax=cellular organi... 48 6e-04 UniRef50_A6QX60 Ribosome biogenesis ATPase RIX7 n=1 Tax=Ajellomy... 47 7e-04 UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter m... 47 7e-04 UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Th... 47 7e-04 UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens ... 47 8e-04 UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gem... 47 8e-04 UniRef50_C4PZ87 Lon protease homolog n=1 Tax=Schistosoma mansoni... 47 0.001 UniRef50_UPI000186ECB9 conserved hypothetical protein n=1 Tax=Pe... 47 0.001 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 47 0.001 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 47 0.001 UniRef50_UPI000192574D PREDICTED: similar to Werner helicase int... 47 0.001 UniRef50_B1AII3 ATPase, AAA family n=14 Tax=Ureaplasma RepID=B1A... 47 0.001 UniRef50_Q4QF14 Peroxisome assembly protein, putative n=2 Tax=Le... 47 0.001 UniRef50_Q1NXJ5 Peptidase S16, ATP-dependent protease La n=2 Tax... 47 0.001 UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 T... 47 0.001 UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJ... 47 0.001 UniRef50_B4QKE0 GD14011 n=1 Tax=Drosophila simulans RepID=B4QKE0... 47 0.001 UniRef50_C9SZ92 Cell division cycle protein (Fragment) n=3 Tax=E... 47 0.001 UniRef50_UPI000180C928 PREDICTED: similar to peroxin1 n=1 Tax=Ci... 47 0.001 UniRef50_C3XWH4 Putative uncharacterized protein n=1 Tax=Branchi... 46 0.001 UniRef50_D1Z2G9 Cell division control protein 48 n=1 Tax=Methano... 46 0.002 UniRef50_A9A5W4 AAA family ATPase, CDC48 subfamily n=2 Tax=Thaum... 46 0.002 UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellula... 46 0.002 UniRef50_Q9LPN2 F2J10.1 protein n=12 Tax=Embryophyta RepID=Q9LPN... 46 0.002 UniRef50_Q8NB90 Spermatogenesis-associated protein 5 n=33 Tax=Fu... 46 0.002 UniRef50_Q0W6B6 Putative cell division cycle protein 48 n=1 Tax=... 46 0.002 UniRef50_A3ERK9 Probable ATPase, AAA family n=2 Tax=Leptospirill... 46 0.002 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 46 0.002 UniRef50_Q4TBC8 Chromosome undetermined SCAF7151, whole genome s... 46 0.002 UniRef50_D2BGD4 Holliday junction DNA helicase n=3 Tax=Dehalococ... 46 0.002 UniRef50_A8MDE9 AAA family ATPase, CDC48 subfamily n=1 Tax=Caldi... 46 0.002 UniRef50_C6CS54 AAA ATPase central domain protein n=1 Tax=Paenib... 46 0.002 UniRef50_UPI0001793755 PREDICTED: similar to nuclear VCP-like n=... 46 0.002 UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ... 46 0.002 UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter fo... 46 0.002 >UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Bacteria RepID=RUVB_DELAS Length = 361 Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 278/329 (84%), Gaps = 1/329 (0%) Query: 6 RLISAG-TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 R+ISA + E+ +RA+RPKLL+EYVGQ + R Q+EIFI AA+ R +ALDH+L+FGPP Sbjct: 28 RMISAAPVSRGEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPP 87 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTL++I+A E+GVNLR TSGPVLEK DLAA+LTNLE +DVLFIDEIHRLSPVVEE Sbjct: 88 GLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEE 147 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPA+EDYQ+DIMIGEGPAARSIK+DL PFTL+GATTRAG LT+PLRDRFGIV RLEFY Sbjct: 148 ILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 207 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +L IV RSA + + D+GA E+ARR+RGTPRIANRLLRRVRD+A+V+ DG+I+ Sbjct: 208 TAEELARIVRRSAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITR 267 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 ++A +AL ML+VD +GFD MDRKLL AV+ +F GGPVGLDN+AA+IGEE TIEDV+EPY Sbjct: 268 ELADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPY 327 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPP 333 LIQQGFLQRTPRGRMAT A+ H G+ P Sbjct: 328 LIQQGFLQRTPRGRMATQAAYRHLGLPVP 356 >UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK53_9FIRM Length = 339 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/313 (62%), Positives = 255/313 (81%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RP+ L EY+GQ +V++ + IFI+AA RG+ALDH+L++GPPGLGKTTLA I+ANE+GV Sbjct: 26 SLRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGPPGLGKTTLAGIIANELGV 85 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N R TSGP +E++GDLAA+LTNL+ HDVLFIDEIHRLS VEEVLY AMED+ LDI+IG+ Sbjct: 86 NFRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGK 145 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 GP+ARSI++D+ PFTLIGATT+AG+L +PLRDRFG++ RLE+Y L +I+ R+A + Sbjct: 146 GPSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEYYTPDALVHIIKRAAEILD 205 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + + D+GALE+ARR+RGTPR+ANRLL+RVRD A+++ GTI+ +IA +AL ML VD G Sbjct: 206 IAIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTITNEIADKALRMLEVDKAGL 265 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D+ DR++L +I+KF GGPVGLD LAAAI E R+TIEDV EPYLIQ GF+ RTPRGR+ T Sbjct: 266 DHTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEPYLIQLGFINRTPRGRIVT 325 Query: 322 TRAWNHFGITPPE 334 + H GI PE Sbjct: 326 EAGYRHLGIPYPE 338 >UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Proteobacteria RepID=RUVB_RHOCS Length = 362 Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/320 (61%), Positives = 251/320 (78%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D A+ +IRP L E++GQ QVR + +FI+AA+ R +ALDH+L+FGPPGLGKTTLA IVA Sbjct: 19 DAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPGLGKTTLAQIVA 78 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 E+ V R TSGPV+ KAGDLAA+LTNL+PHDVLFIDEIHRLSP VEE+LYPAMED+QLD Sbjct: 79 KELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEILYPAMEDFQLD 138 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 ++IGEGPAARS++IDLPPFTL+GATTR+G +T PLR+RFGI R++FY+ +LQ IV+R Sbjct: 139 LIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYEPEELQLIVARG 198 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 AR +G+E++ +GALE+ARR+RGTPR+A RLLRRVRD V + A A AL L V Sbjct: 199 ARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAAAAGGALTRLEV 258 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D GFD MDR+ L + D + GGPVG++ L AA+GE+R+ +E+ +EPYLIQQG LQRTPR Sbjct: 259 DRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYLIQQGLLQRTPR 318 Query: 317 GRMATTRAWNHFGITPPEMP 336 GR+ T + + G+ PP P Sbjct: 319 GRLLTDSGYRYLGLPPPATP 338 >UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruvB n=1359 Tax=root RepID=RUVB_HELMI Length = 370 Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 254/320 (79%), Gaps = 1/320 (0%) Query: 15 PED-VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 PED + ++RP+ L EY+GQ +++ + +FI+AA R + LDH+L++GPPGLGKTTLA Sbjct: 12 PEDRETEWSLRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYGPPGLGKTTLAQ 71 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 I+A E+GV LR TSGP +E+ GDLAA+LTNL+P DVLFIDEIHRL+ VEEVLYPAMED+ Sbjct: 72 IIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAVEEVLYPAMEDF 131 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 LDI+IG+GPAARSI+IDLP FTL+GATTRAG LTSPLRDRFG++ RLE+Y+ +L++I+ Sbjct: 132 CLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLEYYRPDELEFII 191 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 R+A +G+ +GA E+A R+RGTPRIANRLL+RVRD+A+V DG ++ ++A +AL Sbjct: 192 LRAATILGVTAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVVTGEVAREALRR 251 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQR 313 L VD G D D++LL A+I KF GGPVG++ LAA++GE +T+EDV+EPYL+Q GFL R Sbjct: 252 LEVDPRGLDTTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVEPYLMQLGFLNR 311 Query: 314 TPRGRMATTRAWNHFGITPP 333 TPRGRMAT A H G+ P Sbjct: 312 TPRGRMATIAACAHLGVPVP 331 >UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruvB n=275 Tax=cellular organisms RepID=RUVB_ACIBL Length = 360 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 252/330 (76%) Query: 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 +RL+SA + + +RP+ L E++GQP+V+ + + I+AA+ RG+ALDH+L++GPP Sbjct: 25 ERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYGPP 84 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTLANI+ANEM + TSGP L+ GDL A+LTN+ VLFIDE+HRL P +EE Sbjct: 85 GLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPALEE 144 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LY A+EDY+LDI+IG+GP+AR+ ID+ PFTL+ ATTRAG L++PLR RFGIV RLEFY Sbjct: 145 LLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRLEFY 204 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 DL+ I+ RSA + +E+ + GA E+A R RGTPRIANRLLRRVRD+A+V+ G I Sbjct: 205 TTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGKIDR 264 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 + A +AL+ML VD GFD +DR+L+L +I+K+ GGPVGL+ LAA++ EE + IE++ EP+ Sbjct: 265 ETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIYEPF 324 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 LIQ GFL RTPRGR+AT A+ +F + PP+ Sbjct: 325 LIQLGFLDRTPRGRVATHLAYEYFKMKPPK 354 >UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruvB n=77 Tax=Bacteria RepID=RUVB_TRIEI Length = 386 Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust. Identities = 176/315 (55%), Positives = 242/315 (76%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 + IRP+ L+EY+GQ ++ + I I AAK R ++LDHLL++GPPGLGKTT++ I+A EM Sbjct: 65 EEKIRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLGKTTMSLILAAEM 124 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 VN + T+ P +EK D+ +L L+ D+LFIDEIHRLS + EE+LYPAMED++LDI + Sbjct: 125 EVNCKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILYPAMEDFRLDITV 184 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARF 199 G+G ++++ I L PFTL+GATT+ GSLTSPLRDRFGI+QRL FY+V +L I+ R+A+ Sbjct: 185 GQGKSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVDELSLIIIRAAKV 244 Query: 200 MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAE 259 + ++++DGA EVARR+RGTPRIANRLLRRVRD++EVK I+A+IA +AL++ NVD Sbjct: 245 LNTDITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIAGEALELFNVDPL 304 Query: 260 GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM 319 G D+ DR LL +I+ + GGP GL+ +AAA GE+ +TIE+V EPYL+Q GF+QRTPRGR+ Sbjct: 305 GLDWTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQIGFMQRTPRGRV 364 Query: 320 ATTRAWNHFGITPPE 334 T W H G +PP+ Sbjct: 365 VTAAGWRHLGFSPPD 379 >UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruvB n=42 Tax=Bacteria RepID=RUVB_THEEB Length = 363 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/319 (56%), Positives = 241/319 (75%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A+ ++RP L++Y+GQ +++ + I I+AAK R + LDHLL++GPPGLGKTT+A I+ Sbjct: 31 HSLAEDSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPPGLGKTTIALIL 90 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A EMGVN + TS P LE+ D+ +L NL+ D+LFIDEIHRLS + EE+LYPAMED+ L Sbjct: 91 AAEMGVNCKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTEELLYPAMEDFYL 150 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 D+ +G+ AR ++ L FTL+GATTRAG+LTSPLRDRFG+VQRL FY +LQ IV R Sbjct: 151 DLTVGKQQTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRFYHPEELQQIVQR 210 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 A + ++ + ALE+ RR+RGTPRIA RLL+RVRD+A VKHDG I+ D+A AL++L+ Sbjct: 211 GAALLQTPITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRITLDVARAALELLH 270 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 VD G D DR+LL +I+ + GGPVG++ LAAA GE+ +TIE+V EPYL+Q G+LQRTP Sbjct: 271 VDPAGLDGSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEPYLLQMGYLQRTP 330 Query: 316 RGRMATTRAWNHFGITPPE 334 RGR+AT RAW H G T PE Sbjct: 331 RGRVATPRAWQHLGYTAPE 349 >UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruvB n=141 Tax=Bacteria RepID=RUVB_ACIC1 Length = 367 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 240/327 (73%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 LI A E + A+RP+ L+E+VGQ +VR Q+ + + AK RG DH+L+ GPPGL Sbjct: 19 LIDAHAESDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGPPGL 78 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVL 126 GKTTLA IVA E+ +R TSGP ++ AGDLAA+LT L +VLF+DEIHR++ EE+L Sbjct: 79 GKTTLAMIVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAEEML 138 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 Y AMED+++D+++G+GP A I ++L PFTLIGATTR G L PLRDRFG RL+FY+ Sbjct: 139 YLAMEDFRVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDFYEP 198 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 DL+ IV RSAR + + ++ DGA E+ARR+RGTPRIANRLLRRVRD+AEV+ DG I+ ++ Sbjct: 199 ADLERIVHRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITCEV 258 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A AL + VD G D +DR +L A++ +F GGPVGL +A A+GEE ET+E+V EP+L Sbjct: 259 AQAALAVYEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEPFLF 318 Query: 307 QQGFLQRTPRGRMATTRAWNHFGITPP 333 + GFL RTPRGRMAT AW H GITPP Sbjct: 319 RAGFLIRTPRGRMATAAAWRHLGITPP 345 >UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_FERNB Length = 347 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/308 (55%), Positives = 239/308 (77%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RPK L EY+GQ ++ ++++ I+A+K+RG+ LDH+L+ GPPGLGKTTLA I+ANE+ Sbjct: 24 SLRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGPPGLGKTTLATIIANELNA 83 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N+ TSGP+LEK GDLAA+LTNLE DVLFIDEIHR++ VEE+LY AMED+Q+DIMIG+ Sbjct: 84 NIHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVEEILYSAMEDFQVDIMIGK 143 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 GPAARSI+++L PFTLIGATTR+G LTSPLR+RFG++ + FY +L+ I++R+A MG Sbjct: 144 GPAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNFYTQEELKMIITRAAEVMG 203 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + DD AL +A+R+RGTPRIA RLL+RVRD + V+ I+ +I + + +L VD G Sbjct: 204 TLIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENITLNIVEEVMRLLGVDEFGL 263 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D MDRK+L +I+ + GGPVGL +LAA++G +TI +V EP+L+Q GF+ R RGR+AT Sbjct: 264 DEMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPFLVQSGFIARGARGRIAT 323 Query: 322 TRAWNHFG 329 +A+ + G Sbjct: 324 EKAYKYLG 331 >UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Proteobacteria RepID=RUVB_RICRS Length = 342 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/311 (55%), Positives = 236/311 (75%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP L+E+VGQ Q++ + +FIKAAK R + LDH L +GPPGLGKTTLA I++NE+G N Sbjct: 18 IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 77 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 ++TSGP + K DLAA+LTNLE +DVLFIDEIHRL+ VEEVLYPAMED++LDI+IGEG Sbjct: 78 FKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVLYPAMEDFELDIIIGEG 137 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 AARS+KI LP FTLIGATTR G L++PLRDRFGI RL FY +L+ +++R+++ + + Sbjct: 138 SAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELKKVLNRASKLLDI 197 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 +++D G+ E+A+R+RGTPRIA RLLRR+RDFA V+ + +++ L+ L VD G D Sbjct: 198 DLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEVSDFGLNRLEVDRIGLD 257 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 D + L + D + GGPVG++ +AAA+ E+R+ +E+ +EPYLIQ G LQRTPRGR+ T Sbjct: 258 SNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQIGLLQRTPRGRVITI 317 Query: 323 RAWNHFGITPP 333 A+ H ++ P Sbjct: 318 AAFEHLKMSVP 328 >UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruvB n=5 Tax=Bacteria RepID=RUVB_BRAHW Length = 346 Score = 363 bits (933), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 167/315 (53%), Positives = 235/315 (74%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D + IRP+ ++++GQ ++S++++FI +AK R +LDH+L +GPPGLGKTTLA I+A Sbjct: 15 DKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYGPPGLGKTTLAQIIA 74 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 NEMG N++ TS P++E+ GDLA++LT L D+LFIDEIHRL VVEEVLY AMED+ +D Sbjct: 75 NEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVVEEVLYSAMEDFFVD 134 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 I +GEG +A+S ++ LP FTLIGATTR+G L++PL DRFGIV+RLEFY DL IV RS Sbjct: 135 IKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLEFYTNEDLANIVKRS 194 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 + F+ + ++D+ A+ +A R+RGTPRI NRLLRRV DFA V I A +L+ L + Sbjct: 195 SEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKIDEKFACDSLEKLGI 254 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D GF+ +D+ L +I + GGPVG+D L+ ++ E+ ETIEDV+EPYLIQ GF++RTP+ Sbjct: 255 DKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIEPYLIQCGFIKRTPK 314 Query: 317 GRMATTRAWNHFGIT 331 GR+AT +A+ + ++ Sbjct: 315 GRVATNKAYGYLNLS 329 >UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruvB n=19 Tax=Bacteria RepID=RUVB_ARCB4 Length = 345 Score = 360 bits (925), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 168/323 (52%), Positives = 242/323 (74%), Gaps = 1/323 (0%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 + ED + ++RP ++Y+GQ +++ + +FI A+K R +ALDH+L +GPPGLGKTT Sbjct: 9 SVSFEEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTT 68 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 L+ +++NEM N++ T+GP++EK+GDLAA+LTNLE D+LFIDEIHRLSP VEE+LYPAM Sbjct: 69 LSYLISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAM 128 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 EDY+LDI+IG GPAA+++KIDLP FTLIGATTRAG L++PLR+RFG+ R++FY +L Sbjct: 129 EDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTEIELA 188 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 I+ +++ +G DD +LE+++R+RGTPR+A RLLRRVRDF+EV+++ +I A Sbjct: 189 KIIQKASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSIHLQRCKYA 248 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 LD L V+ GFD MD LL +I G P+GL +AAA+ E+ TIED +EPYL+ G+ Sbjct: 249 LDELGVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGY 307 Query: 311 LQRTPRGRMATTRAWNHFGITPP 333 ++RT RGR+A+ + + F ++ P Sbjct: 308 IERTARGRVASVKTYEMFRLSYP 330 >UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Thermotoga lettingae TMO RepID=RUVB_THELT Length = 343 Score = 355 bits (912), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 165/308 (53%), Positives = 234/308 (75%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RP LE+Y+GQ +V+ ++ I +KAAKLR + LDH+L GPPGLGKTTLA ++A EMG Sbjct: 16 SLRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTTLAFVIAKEMGK 75 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N+ TSGPVLE+ GD+AA+L+++E D+LFIDEIHR++ VEEV Y A+EDY++DIMIG+ Sbjct: 76 NIHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSALEDYKVDIMIGK 135 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 GP ARSI+I L PFTL+GATTR+G L+SPLR+RFG++ L+FY V +L I+ R+ + M Sbjct: 136 GPTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELMEIIKRACKIMN 195 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 +E+ + A +A RARGTPRIA RLL+RVRD A ++ + I + + + +D+L +D G Sbjct: 196 IEIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKTMDILEIDKLGL 255 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D MDRK+L +I+ + GGPVG++ LAA + E +T++++ EPYL+QQG + RTPRGR+AT Sbjct: 256 DEMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGLIIRTPRGRVAT 315 Query: 322 TRAWNHFG 329 A+ H G Sbjct: 316 GIAYEHLG 323 >UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7E4_9BACT Length = 347 Score = 352 bits (902), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 169/323 (52%), Positives = 236/323 (73%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 T LP + +RP L E+ GQ +++ ++ I+++AA+LRG+ LDH L +GPPGLGKTTL Sbjct: 12 TGLPAGDEEGGLRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTL 71 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + I+A+EMG +LR T+GP LEK GDLAA+LT+L+ DVLFIDEIHR+S EEVLY AME Sbjct: 72 SGIIAHEMGGSLRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAME 131 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQY 191 D+ + +++G+GP AR++ + +P FTL+GATTR G L+SPLR RFGIV++L Y +L Sbjct: 132 DFSIHLIVGKGPLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQ 191 Query: 192 IVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQAL 251 I+ R A + + S +G +ARR+RGTPR+A RLLRRVRD A+V I + +QA+ Sbjct: 192 ILQRGAGLLNVSASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAM 251 Query: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311 DML +D GF+ DR+++ V++ F GGPVGL +AAA+ EE +TIED+ EPYLIQQG + Sbjct: 252 DMLGLDDRGFNAGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMI 311 Query: 312 QRTPRGRMATTRAWNHFGITPPE 334 +RTPRGR AT +A+ + G+ P+ Sbjct: 312 ERTPRGRKATEKAYEYLGLPVPQ 334 >UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=canis group RepID=RUVB_EHRCJ Length = 329 Score = 340 bits (872), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 166/322 (51%), Positives = 233/322 (72%), Gaps = 3/322 (0%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 I T ED + +IRP LL+E++GQ V + ++IFI AA R + +DH+L++GPPGLG Sbjct: 4 ILQSTECLEDQQNVSIRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGLG 63 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTTLA+I+A E+ VN R+T+GP+L KAGDLAA+LTNL+ D+LFIDEIHRL+ +EE+LY Sbjct: 64 KTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEILY 123 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 AMED+ LDI++GEG AR++++DLP FTL+GATTR G L++PLRDRFGI LEFY Sbjct: 124 SAMEDFCLDIIVGEGCGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYSTE 183 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV-KHDGTISADI 246 +L ++ R+A+ + ++SD GA E++ RARGTPRIA RLLRR+RDF EV +H+ TI+ Sbjct: 184 ELIKVIQRAAKVIKTDISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITDTF 243 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A +AL L +D G D D + L + D P G+D +++ + E+ IE+ +EPYLI Sbjct: 244 ADKALLRLGIDKLGLDRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPYLI 301 Query: 307 QQGFLQRTPRGRMATTRAWNHF 328 + F+QRTPRGR+ T +A ++ Sbjct: 302 KINFIQRTPRGRVITQKAISYL 323 >UniRef50_B3H0C7 Holliday junction ATP-dependent DNA helicase RuvB n=13 Tax=cellular organisms RepID=B3H0C7_ACTP7 Length = 210 Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/206 (78%), Positives = 186/206 (90%) Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPAMEDYQLDIMIGEGPAARSIK+DLPPFTL+GATTRAGSLTSPLRDRFGIVQRLEFY Sbjct: 1 MLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFY 60 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V DL IV RSA + L +S DGA EVARR+RGTPRIANRLLRRVRD+A+V+++G I++ Sbjct: 61 SVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITS 120 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 DIA QAL ML+VD+EGFD+MD KLL A++++F GGPVGLDNLAAAIGEER+TIEDVLEPY Sbjct: 121 DIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPY 180 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGI 330 LIQQGFLQRTPRGR+AT+R + H GI Sbjct: 181 LIQQGFLQRTPRGRIATSRTYAHLGI 206 >UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruvB n=9 Tax=Bacteria RepID=RUVB_LEPBL Length = 341 Score = 330 bits (845), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 150/307 (48%), Positives = 225/307 (73%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 +RP LL E++GQ +V + + ++++AAK R ALDH+LI GPPGLGKTTLA IV+NE+G Sbjct: 18 GLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELGT 77 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 L TS PV+ K DLA +LT++ +++LFIDEIH L +EE+LYPAME+Y +D++IGE Sbjct: 78 RLTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIGE 137 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 G A+ ++I L PFTL+GATTR+G ++ PL+ RFGI RL++Y +++ IV RS+R +G Sbjct: 138 GVTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRILG 197 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 +++ DD ALE+ +R+R TPRIAN LL+R+RDF+EV+ + ++ + +A + + +D G Sbjct: 198 VKIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLGL 257 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D MDR++L +ID++ GGPVGL +A +GEE +TIED E ++++ G + RTP GR+AT Sbjct: 258 DGMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVAT 317 Query: 322 TRAWNHF 328 +A+ Sbjct: 318 EKAYRQL 324 >UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_DESAH Length = 354 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 161/309 (52%), Positives = 216/309 (69%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RP E YVGQ ++I I+AAK+RGD LDH+L+ GPPGLGKTT+++I+ANEMG Sbjct: 39 SLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGPPGLGKTTISHIIANEMGG 98 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 L TSGP LEK GDL MLTNL D+LFIDEIHRL VEE LYPAMED+ +D + + Sbjct: 99 TLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVEEFLYPAMEDFAVDFVFDK 158 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 G ARS + L F L+GATTR G ++SPLRDRFGI + L+FY +L I+ RSA + Sbjct: 159 GLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDFYTDEELVTIIRRSAGLLN 218 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + + D ALE+ARR+RGTPRIANRLL+RVRDF+ V+ G ++ A AL + +D++G Sbjct: 219 VVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVTQKSVAAALSLEGIDSKGL 278 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 +DR L +I+ + GGPVG++ +AA + EE +T+ DV+EPYL++ G + RT GR A+ Sbjct: 279 TVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPYLLKIGMVMRTSAGRRAS 338 Query: 322 TRAWNHFGI 330 A+ H GI Sbjct: 339 VGAYEHLGI 347 >UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Spirochaetaceae RepID=RUVB_BORHD Length = 352 Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/323 (47%), Positives = 225/323 (69%) Query: 3 EADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFG 62 E +L+++ D + +RPK L ++ GQ ++ + +FIKA++ R +ALDH+ + G Sbjct: 5 EGSKLLNSDKNFLYDRNESELRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFLSG 64 Query: 63 PPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 PPGLGKTTLA+I+A EM ++ TS P L+K D+ +LT L+ +LFIDE+HRL PV+ Sbjct: 65 PPGLGKTTLASIIAVEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKPVI 124 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLE 182 EE+LY AMEDY++D +IG+GPAAR++++ +P FTLIGATT+ G + SPL RFGIV R E Sbjct: 125 EEMLYIAMEDYKIDWIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSRFE 184 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 Y +L I+ R++ + ++ D A +A+ +RGTPR+ANRLLRR+RDFA+V I Sbjct: 185 LYSEDELVKIIQRNSIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYDLI 244 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + +I + L+ML +D EG D DR +L ++I KF GGPVG++ LA ++GE +++ED E Sbjct: 245 TENIVSDGLEMLKIDHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYE 304 Query: 303 PYLIQQGFLQRTPRGRMATTRAW 325 PYLI +G ++RT RGR AT A+ Sbjct: 305 PYLILKGLIERTSRGRKATDFAY 327 >UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruvB n=8 Tax=Chlamydia RepID=RUVB_CHLT2 Length = 334 Score = 323 bits (827), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 156/315 (49%), Positives = 221/315 (70%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 D ++RPK L E+ GQ Q++ ++++F++AA R + H L +GPPGLGKT+LA+I+AN + Sbjct: 15 DFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTI 74 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 G L SGP L K DL +LT L+ D+ FIDEIHR+ EE LYPAMED+++DI + Sbjct: 75 GKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITL 134 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARF 199 GP ARS+++DL PFTL+GATTRAG L+ PLR RF R+++Y DL I+SRS++ Sbjct: 135 DSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQL 194 Query: 200 MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAE 259 + +E + + LE+ARRARGTPR+AN LLR VRDFA+++ I++ +A +AL ML +D Sbjct: 195 LAIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNL 254 Query: 260 GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM 319 G + +D KLL +ID + GGPVG+ LA A+GE+ T+ED+ EP+LI +G +QRT RGR+ Sbjct: 255 GLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRV 314 Query: 320 ATTRAWNHFGITPPE 334 AT A+ H P + Sbjct: 315 ATPLAYEHLNRNPKD 329 >UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFL1_DICT6 Length = 332 Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 148/313 (47%), Positives = 215/313 (68%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D A+RPK L E++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 13 EPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLALII 72 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P ++K+GDL A+LT +E V+FIDEIHRLSP +EE+LY A+ED + Sbjct: 73 AEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALEDGSI 132 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + + LPPFTLIGATTR L++PLRDRFG + L+FY ++ I+ R Sbjct: 133 SIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKIIER 192 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL +S + EVA+R+RG PRIANR+L+R++D+ +++ + I + L+++ Sbjct: 193 SQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLELIG 252 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D G D +DRK+L + DKF GGPVGL LAA + E ETIE + EPYL++ GF+QRT Sbjct: 253 IDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQRTS 312 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 313 RGRVITPLGLAHI 325 >UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Desulfobacteraceae RepID=RUVB_DESOH Length = 343 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 160/317 (50%), Positives = 213/317 (67%), Gaps = 2/317 (0%) Query: 16 EDVADR--AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 ED D ++RP E+YVGQ + + I I AAK R + L+H+L GPPGLGKTTLA+ Sbjct: 23 EDTGDDLFSLRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFHGPPGLGKTTLAH 82 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 I+A EMG +L TSGP LEK GDL MLT+L+ D+LF+DEIHRL EE LYPAMED+ Sbjct: 83 IIAAEMGTSLTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRTTEEFLYPAMEDF 142 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 +D + +G AR + L F L+GATTR G L++PLRDRFGI ++ +FY DL IV Sbjct: 143 AVDFVFDKGIHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKFDFYSRQDLARIV 202 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 SRSA MGL + + +E+ARR+RGTPRI NRLL+RVRD+ +V+H G I+ AL + Sbjct: 203 SRSAALMGLTIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGVITVSAIDDALAL 262 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQR 313 VD +G +DR L +I + GGPVG++ + A + EE +T+ DV+EP+L+ +G LQR Sbjct: 263 EGVDEKGLTGLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVVEPFLLAEGLLQR 322 Query: 314 TPRGRMATTRAWNHFGI 330 T GR AT A+ H G+ Sbjct: 323 TSSGRKATEAAYRHLGV 339 >UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2P1_DICTD Length = 334 Score = 316 bits (809), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 145/313 (46%), Positives = 219/313 (69%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D +RPK L +++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 15 EPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLALII 74 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P L+K+GDL A+LT++E ++FIDEIHRL+P +EE+LY A+ED + Sbjct: 75 AEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALEDRSV 134 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + I LPPFTL+GATTR L+SPLRDRFG + L+FY ++ I+ R Sbjct: 135 SIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKIIER 194 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL + + +E+A+R+RG PRIANR+L+R++D+ ++K + I+ + + L+++ Sbjct: 195 SQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLELIG 254 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D +G D +DRK+L A+ DKF GGPVGL LAA + E +TIE + EPYL++ GF+QRT Sbjct: 255 IDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQRTS 314 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 315 RGRIITPLGLAHI 327 >UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cellular organisms RepID=B1X4N3_PAUCH Length = 356 Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 149/309 (48%), Positives = 217/309 (70%), Gaps = 1/309 (0%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RPK L +Y+GQ +++ + I IKAA + +DH+L++GP GLGKTT+A ++A E+GV Sbjct: 45 SLRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTIALVLAAELGV 104 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 R S P +E+ D+ +L NLEP++VLFIDEIHRL+ + EE+LY AMED++LDI +G+ Sbjct: 105 PCRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAMEDFRLDISVGK 164 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 AR I + PFTL+GATT AG+L+ LRDRFG+VQRL Y + DL I+ R+A + Sbjct: 165 SRVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCNIIKRTANILL 224 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK-HDGTISADIAAQALDMLNVDAEG 260 L + + LE+A+R RGTPRIANRLLRR+RD ++ +D I+ ++A + L + VD G Sbjct: 225 LTLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEVLSLHQVDNRG 284 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 D DR++L +I+ + GGPVGL +AA++GE+ +E +EP+L+Q GFL+RTPRGR+ Sbjct: 285 LDANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGFLKRTPRGRIV 344 Query: 321 TTRAWNHFG 329 T + H G Sbjct: 345 TLEGYKHLG 353 >UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Planctomycetaceae RepID=D2R652_9PLAN Length = 352 Score = 314 bits (805), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 159/315 (50%), Positives = 213/315 (67%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 +PE DR +RP+ + + VGQ +V ++ I + AA+ R D L H+L GPPGLGKTT AN Sbjct: 32 IPEPEEDRDLRPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDGPPGLGKTTFAN 91 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 + E+ V L T+SGP L+ DL LTNLEP+ VLFIDEIHR+ VEE LY AMED+ Sbjct: 92 CIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPVEEYLYTAMEDF 151 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 +LDI++GEG AR+I + L PFTLIGATTRAG L+SPLRDRF + + L FY V +L IV Sbjct: 152 RLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLGFYTVDELTEIV 211 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 RSA + ++ D A+E+ARR+RGTPRIAN LR VRD+AE K G I+ +A AL M Sbjct: 212 RRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQITVAVAQAALAM 271 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQR 313 +D G D DR L ++ F GGPVG+D++A + +T+ D +EP+L++ + R Sbjct: 272 SGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVEPFLLRCELIVR 331 Query: 314 TPRGRMATTRAWNHF 328 +PRGRM T++A+ H Sbjct: 332 SPRGRMLTSKAFEHL 346 >UniRef50_Q0W1R6 Holliday junction resolvasome, helicase subunit n=3 Tax=cellular organisms RepID=Q0W1R6_UNCMA Length = 337 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 189/241 (78%) Query: 88 GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 147 GP +E+AGDLAA+LTNL+ DVLFIDEIHRLS VVEE+LY AMED+++DI+IG+GP+ARS Sbjct: 91 GPAIERAGDLAAILTNLKEGDVLFIDEIHRLSHVVEEILYSAMEDFEIDIIIGKGPSARS 150 Query: 148 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDD 207 I+++LP FTL+GATTRAG L+ PLRDRFG+ R EFY DL+ I+ RSA+ + +E++ D Sbjct: 151 IRLELPRFTLVGATTRAGMLSPPLRDRFGMSLRFEFYTPEDLKTIIDRSAKILNMEITPD 210 Query: 208 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRK 267 G++E+A R+RGTPRIANRLLRRVRDFA V+ I IA ++LD L+VD G D MDR+ Sbjct: 211 GSMEIAARSRGTPRIANRLLRRVRDFAHVEKKTVIDTGIARKSLDKLDVDFLGLDAMDRR 270 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNH 327 +L +I + GGPVG + LA ++ EE +TIEDV EPYLIQ GF+ RTPRGRMAT A H Sbjct: 271 ILKTIIKDYGGGPVGAETLAVSVSEETDTIEDVYEPYLIQIGFINRTPRGRMATPAAVEH 330 Query: 328 F 328 Sbjct: 331 L 331 >UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruvB n=7 Tax=Prochlorococcus marinus RepID=RUVB_PROM0 Length = 352 Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 137/299 (45%), Positives = 209/299 (69%), Gaps = 2/299 (0%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP L+E++GQ Q++S + I I A+ R + L+H+L++G PGLGKTTLA ++A+E+ Sbjct: 41 RPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQPGLGKTTLAFLIAHELNTKC 100 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + + P +E+ D+ +L L+ +VLFIDEIHRL+ + EE+LY AMED++LD+ +G Sbjct: 101 KIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANK 160 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 R I+LP FTLIGATT+ S+++PLRDRFGI Q++EFY +L+ I+ +R + L Sbjct: 161 GTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYNYDELKQILLNFSRLINLN 220 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAE-VKHDGTISADIAAQALDMLNVDAEGFD 262 + D+ + ++A+ +RGTPRIA RLLRRVRD+A+ V TIS ++ +AL+ +D +G D Sbjct: 221 LDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNLIKKALNSYQIDDKGLD 280 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 +DR L+ I++ P+GLD++AA +G++ +E V+EPYLI+ GFL RTPRGR+ T Sbjct: 281 SLDRH-YLSFINQNNNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTRTPRGRLLT 338 >UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Rhodopirellula baltica RepID=RUVB_RHOBA Length = 366 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/317 (44%), Positives = 202/317 (63%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 D +RP+ + E VGQ V ++ I I AA++RG+ L H+L GPPGLGKTT A ++ +EM Sbjct: 48 DVTLRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSEM 107 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 ++ +G L+ DL LTN+ VLFIDEIHR+ +EE LY AMED+++DI++ Sbjct: 108 KTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRIDIVL 167 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARF 199 GEG AR++ + L PFTLIGATTRAG LT+PLRDRF I + L +Y +L IV R+++ Sbjct: 168 GEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRNSKK 227 Query: 200 MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAE 259 + +E+ A +A R+R TPR+AN L VRD+A+ K G + A + ALDM+ +D Sbjct: 228 LNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGIDHL 287 Query: 260 GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM 319 G D DR L ++ F GGP GLD +A + +T+ED +EP+L++ L RT RGR+ Sbjct: 288 GLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGRL 347 Query: 320 ATTRAWNHFGITPPEMP 336 AT +A+ H P+ P Sbjct: 348 ATPKAFEHMKRQMPDRP 364 >UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Mycoplasma RepID=RUVB_MYCH2 Length = 318 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 198/315 (62%), Gaps = 3/315 (0%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 +PE++ IRP E ++GQ ++ ++I I +++ R +LDH+L +GPPG GKTTLAN Sbjct: 1 MPENLE---IRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLAN 57 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 IVAN + ++ GP+LEK D+ A+L N+ P ++FIDEIH ++ +EE+LY AME++ Sbjct: 58 IVANVLEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEF 117 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 +D+ IG + +++ LP FTLIGA+T+ +++PL++RFG V ++ Y + D+ I+ Sbjct: 118 VIDLQIGVDGERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQII 177 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 S+ + L+M+ + +A + TPRIAN LL+R+RDFA V + I DI + D Sbjct: 178 RNSSAVLKLKMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDS 237 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQR 313 + + +G ++ + L ++ F G V LD +A + E R+TI +++EP LI++ +++ Sbjct: 238 IGIYNQGLSQINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEK 297 Query: 314 TPRGRMATTRAWNHF 328 T RGR T + ++ Sbjct: 298 TSRGRRITKKGRDYL 312 >UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y6_COPPD Length = 320 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 176/301 (58%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 L+E+VGQ S + ++AAK G DH+L FGPPGLGKTTLA +VA E+ N T+ Sbjct: 14 LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73 Query: 88 GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 147 G L D+ +L + V FIDEIHR+ VEE+LY M++ + +M+G+ AR Sbjct: 74 GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133 Query: 148 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDD 207 IK DL PFTLIGATT+ L+ P RF I +Y ++ I+ GL++S + Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193 Query: 208 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRK 267 E+A+R+RGTPR A ++ RRV ++A + H T+ ++LN+D G +D+ Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNH 327 + + + F GGP G+ LA+A+G + ET+E V+EPYL+ GF+ T RGR T + W Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWKA 313 Query: 328 F 328 + Sbjct: 314 Y 314 >UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n=2 Tax=Mycoplasma RepID=C5J672_MYCCR Length = 321 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 181/304 (59%), Gaps = 1/304 (0%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP E ++GQ ++ +++ I++++ R LDH+L GPPG GKTTLANI+A+ + Sbjct: 7 IRPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANIIASMVNTK 66 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 ++ GP+LEK D+ AML N+ V+FIDEIH ++ +EE+LY AME++ +D+ IG Sbjct: 67 IKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFVIDLQIGVD 126 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 + +++ LP FTLIGA+T+ +++PL++RFG + ++ Y D++ I+ SA+ + + Sbjct: 127 GENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIYNSAKKLHI 186 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 + + TPRIAN LL+R+RDFA V++ I +I + D + V G Sbjct: 187 NLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSIGVYKNGLS 246 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + L + F V LD L + E R+TI ++EP L+++ ++++T RGR T Sbjct: 247 ETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKTIRGRRITQ 306 Query: 323 R-AW 325 + W Sbjct: 307 QGVW 310 >UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN3_MYCGA Length = 306 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 185/308 (60%), Gaps = 12/308 (3%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP +E++G+ +++ ++ FI A+ + ALDH+L +GPPG+GKT+LA I+ANE+ + Sbjct: 5 RPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANELKSKI 64 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + ++K DL + L +DVLFIDEIH LSP + E+L+P MEDY +DI+IG+ Sbjct: 65 KILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILIGKEF 124 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 ++ ++ LPPFTLIGATT G + PL +RFGI+ +L++YQ ++ I+ ++ Sbjct: 125 NSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAKEKIK 184 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 ++ D +++A ++GTPR A R+ +RV DF + TI + L+ LN+ G Sbjct: 185 LTKDEMVQIAEHSKGTPRNALRIYKRVMDFKLFDQEITIKS-----ILEKLNIYQYGLSN 239 Query: 264 MDRKLLLAVIDKFFGGP---VGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 +D L + F P +GL +L+ G + TIE +EPYL++ +++T +GR Sbjct: 240 LD----LEYLKSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTSKGRQI 295 Query: 321 TTRAWNHF 328 T +A +F Sbjct: 296 TQKAIQYF 303 >UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Mycoplasma RepID=RUVB_MYCPU Length = 315 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 186/308 (60%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 + IRPK ++VGQ +++ +++ I +A+++ LDH+L +G PG GKT+LA+I++N + Sbjct: 5 QEIRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLN 64 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 ++ G +L+K D+ + ++E +D++F+DEIH ++ +EE+LY +ED+ +DI+IG Sbjct: 65 SRIKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIG 124 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 ++ ++++L PFT IGATT+ ++ PLRDRFG++ ++ YQV D++ I+ +++ + Sbjct: 125 VESNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKL 184 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 +++ + +A ++ PR+A LL+R +DF + I + + L L + G Sbjct: 185 NIQIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENG 244 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 + K L ++ + F+ V LD + + ++ETI +EP LI + +TPRGR Sbjct: 245 LNESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGRKI 304 Query: 321 TTRAWNHF 328 T + ++ Sbjct: 305 TQKGISYL 312 >UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Mycoplasma RepID=A5IY13_MYCAP Length = 320 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 182/306 (59%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP +E++GQ ++ ++ I + R + LDH+L +GPPG GKTTLA+++ NE+ Sbjct: 6 LRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNKR 65 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + G +LEK D+ ++ N+ +D++FIDEIH ++ VEE++Y AMED+++D++IG Sbjct: 66 VHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGPE 125 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 ++ ++++L PFTL+GATT+ L+ P +DRFG++ RL Y ++ I+ S + + + Sbjct: 126 GNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLKV 185 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E D + +A+ +R TPRIAN LL+R DF+ + I A L + G + Sbjct: 186 ETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGLN 245 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + L + + F+ V +D ++ + +E + + +EPYL+ ++++PRGR TT Sbjct: 246 KEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRITT 305 Query: 323 RAWNHF 328 + ++ Sbjct: 306 KGVDYL 311 >UniRef50_Q8EWC6 Holliday junction DNA helicase n=1 Tax=Mycoplasma penetrans RepID=Q8EWC6_MYCPE Length = 322 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 181/305 (59%), Gaps = 11/305 (3%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP+ L+++ G+ +++ + +I ++K R + LDH L +GP G+GKTTLA I++NE+ N Sbjct: 6 IRPQYLKDFCGKNNIKNNLLAYIDSSKNRNECLDHCLFYGPAGVGKTTLAKIISNELSQN 65 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 ++ GP +++ D+ ++ +L + ++FIDE+H ++P E+LY AMED++++I IG+ Sbjct: 66 IKIVQGPEIQEKTDILNLIYSLNENSIIFIDEVHSINPKCFELLYSAMEDFEINIEIGKD 125 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 + + +P FTLIGATT+ G+L +P +RFGIV + Y ++ I+ S + + Sbjct: 126 FNKKLTTVSIPKFTLIGATTKLGNLPAPFEERFGIVINISEYTEKEIYKILDFSLKQCDI 185 Query: 203 EMSDDGALE-VARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 ++ D LE ++ R++G PRIA R+L R D H T S + A L + V +G Sbjct: 186 KV-DKKVLEIISHRSKGIPRIAKRILARYLD-----HSLT-SNNTAETILKNIGVYEKGL 238 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 + +D LL + + +GL L+ + + +TI + +EP+LI+ F+ +T GR+ T Sbjct: 239 NEIDLSYLLCIYE---NTKLGLKTLSQILNVDEKTIIEKIEPFLIKNNFISKTINGRILT 295 Query: 322 TRAWN 326 N Sbjct: 296 DNGLN 300 >UniRef50_P75242 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Mycoplasma RepID=RUVB_MYCPN Length = 307 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 190/304 (62%), Gaps = 7/304 (2%) Query: 25 PKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLR 84 P E+VG+ ++ +Q+++ IKA+++ LDH+L++GPPG+GKTTLA ++A+EM L+ Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67 Query: 85 TTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPA 144 G L++ D ++ ++ DVLF+DEIH ++P V E+++P M+D+++ ++IG+ Sbjct: 68 IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127 Query: 145 ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEM 204 ++ +++ + PFT IGATT+ G + +PL DRFG++ +++Y +++ IVS M LE+ Sbjct: 128 SKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187 Query: 205 SDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYM 264 + ++ + ++ TPRIA R+++R+ + V D+AA L + G + Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFEQKIVNK----KIDLAA-LFKSLMIYKNGLQSI 242 Query: 265 DRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRA 324 D + L A+ ++ P G+ ++ + +G ++ T+E+ +EP+L+++ +Q+T +GR+ T Sbjct: 243 DVQYLKALNGQY--EPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTG 300 Query: 325 WNHF 328 N+ Sbjct: 301 RNYL 304 >UniRef50_B3H0C6 Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0C6_ACTP7 Length = 137 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 100/120 (83%), Positives = 107/120 (89%), Gaps = 3/120 (2%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 MIEADR+ISA E++ DRAIRPKLL +YVGQP VR QMEIFIKAAKLR +ALDHLLI Sbjct: 1 MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEI---HR 117 FGPPGLGKTTLANIVANEMGVN+RTTSGPVLEKAGDLAAMLTNLEP+DVLFIDEI HR Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIPAYHR 120 >UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMK4_MYCA5 Length = 317 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 175/306 (57%), Gaps = 2/306 (0%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 R K +++GQ ++ +++ I +A +DHLL +GPPGLGKT+LA I+A E N+ Sbjct: 7 RVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATETKRNI 66 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 GP+LEK D+ +L +++ +D++FIDE+H ++ +EE+LY A+ED +DI +G Sbjct: 67 VYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPLGVEG 126 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 R +++ L F+LI ATT+ L+ PL+DRFG + +L Y ++ I++ SA + Sbjct: 127 DRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAARNNIP 186 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 + + ++A +R TPR+AN LL+RV DFA + I+ + +A + + G Y Sbjct: 187 IDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQYGLVY 246 Query: 264 MDRKLLLAVIDKFFGGPVG-LDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + L V+ + F G LD ++ I +E+ TI + +EP L+ ++++ RGR T Sbjct: 247 SQIE-YLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGRKITA 305 Query: 323 RAWNHF 328 + Sbjct: 306 NGIRYL 311 >UniRef50_B1AJ89 Holliday junction ATP-dependent DNA helicase ruvB n=15 Tax=Ureaplasma RepID=RUVB_UREP2 Length = 312 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 176/304 (57%), Gaps = 9/304 (2%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 + RP+ L++++G+ Q+++ +++++ A+K ++ DH L+ G G GKTTLA I+ANE Sbjct: 3 TNYEFRPQYLKDFIGKEQLKNNLKVYLTASKRLENSFDHTLLHGLSGTGKTTLALIIANE 62 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 M VN T G +L K D+ +L+ ++ +DV+FIDEIH E LY +ED+ +DI Sbjct: 63 MNVNCHITQGNLLNKPIDIINLLSLIKENDVVFIDEIHACGLGAFETLYSVLEDFCIDIN 122 Query: 139 IGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR 198 IG+ ++ ++ +P FTLIGATT G + L +RFG + L Y+ ++ I+ ++ + Sbjct: 123 IGKDFNSKMTRLKIPHFTLIGATTIFGKIPKSLEERFGHIFHLNEYEPSEISAIILKNNQ 182 Query: 199 F-MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVD 257 ++++++ +A A+G PR+ANRLL+RV DF ++ I + +D Sbjct: 183 MHFQIDLNEEEIDLIANNAKGIPRLANRLLKRVVDF-KINGFNDIKNIFKKIQIYEFGLD 241 Query: 258 AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRG 317 + +Y++ +L D +GL ++A + ++ TIE +EPYLIQ F+ + RG Sbjct: 242 EQDINYLN---VLYRQD----NEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRG 294 Query: 318 RMAT 321 R T Sbjct: 295 RKIT 298 >UniRef50_Q6F144 Holliday junction DNA helicase n=3 Tax=Mollicutes RepID=Q6F144_MESFL Length = 315 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 163/301 (54%), Gaps = 3/301 (0%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP EY+GQ +V ++I I+++ + LD ++ GP G+GKT+LA +++ + + Sbjct: 6 RPSKWSEYIGQEKVIKNLKICIESSIKQNKVLDPIIFSGPSGMGKTSLAYLLSKILKTKI 65 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 +GP L++ DL ++LT+++ + +LFIDE+H +S + EVLYP +E+ +L I+IG+ Sbjct: 66 HIVNGPSLQRPSDLISVLTSIKENQILFIDEVHSVSKDIMEVLYPVLEENKLSIIIGKEY 125 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 ++ + I LP FT+I ATT L P +RF I LE Y DL I+ + + + Sbjct: 126 NSKIVNIKLPNFTIITATTEINKLPFPFLNRFPIQFELEGYNHDDLTKIIINTFNKLQYK 185 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 + + A +A+ +R PR+A L++R+ DF + +S + + G + Sbjct: 186 IEIEQAKIIAKFSRLVPRVAINLVKRIYDFLITEKIKDLSEKNLIWVFKQMGLYEYGLNE 245 Query: 264 MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTR 323 D L +++ + LD+LA I +TI + +EP +++ + +T RGR T + Sbjct: 246 KDLDYLFTLLE---NNTLSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTNK 302 Query: 324 A 324 Sbjct: 303 G 303 >UniRef50_UPI00016C564A Holliday junction DNA helicase RuvB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C564A Length = 318 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 151/308 (49%), Gaps = 10/308 (3%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 + P L +GQ V Q+ + + AA DH L+ GPPG GKT A ++A EM Sbjct: 10 VAPTSLAHLIGQRSVVEQVRVALDAAHQDAKKFDHALLCGPPGCGKTQTAKVIAQEMAGE 69 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI-GE 141 + G ++ DL A+L + DV+ +DE H L + LY A++ ++ + G Sbjct: 70 FQEVLGQAIQSPADLNALLLGAKDRDVILLDEAHELDREYQTALYLAIDQRRVLLQTKGR 129 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 P A I L FTL+ ATT L PLRDR + R FY +L ++ + A + Sbjct: 130 TPQA----IPLADFTLLLATTDEFKLLQPLRDRMRLCLRFGFYSAEELAELIRQRAAALA 185 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 ++ + +A R+RGTPR+A RLL+ R + D ++ +A + +D G Sbjct: 186 WDVDVNVYRPIAARSRGTPRLALRLLQAARRVCRSQGDERVTGVHLERACLLEGIDGLGL 245 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRG-RMA 320 +++ LAV+ + G L+ +A+ +G T+ +V EP+LI+ G + + +G R Sbjct: 246 GPTEQQ-YLAVLGE---GANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRQL 301 Query: 321 TTRAWNHF 328 T +HF Sbjct: 302 TAEGRDHF 309 >UniRef50_A4NW27 Holliday junction DNA helicase B n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NW27_HAEIN Length = 80 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/71 (69%), Positives = 53/71 (74%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 MIEADR+IS + EDV DRAIRPKLL +YVGQPQVR QM+IFIKAAKLR DALDHLLI Sbjct: 1 MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLI 60 Query: 61 FGPPGLGKTTL 71 K L Sbjct: 61 LALQVWEKQRL 71 >UniRef50_C5M4W5 Predicted protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M4W5_CANTT Length = 498 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 50/242 (20%) Query: 22 AIRPKLLEEYVGQPQVRSQME----IFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 AIRP EEYVGQ + +Q FIK L ++ GPPG+GKTTLA++++ Sbjct: 30 AIRPTTFEEYVGQDHLLNQQNGSIFTFIKLGYLPS-----MIFLGPPGVGKTTLASVISY 84 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 E + S L G+L + E V+FIDEIHRL+ V ++ L P +E+ ++ Sbjct: 85 ECKLPFIELSATTL-TTGELKQIAMMHEEQIVVFIDEIHRLTKVQQDWLLPYVENGKM-- 141 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV-----PDLQYI 192 LIGATT S R R I+ R + + P+LQ I Sbjct: 142 ------------------VLIGATTSHPS----KRIRHAILSRCHVFCLRRLATPELQII 179 Query: 193 VSRSARFMGL---------EMSDDGALE--VARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + ++ ++ L E+ D E + A G RIA L+ + + DG Sbjct: 180 LRKAIKYQNLKRKHVLNLPEIDYDQVCEDLILELAHGDSRIAINLVELISNNYSQTDDGR 239 Query: 242 IS 243 IS Sbjct: 240 IS 241 >UniRef50_B9WCE8 AAA family ATPase, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WCE8_CANDC Length = 490 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 51/262 (19%) Query: 22 AIRPKLLEEYVGQPQV----RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 AIRP E+YVGQ + + FIK L +++ GPPG+GKTTLA++++ Sbjct: 25 AIRPTTFEQYVGQDHLINPQNGAIRNFIKLGYLPS-----MILSGPPGIGKTTLASVISY 79 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 E G+ S + DL ++ VLFIDE+HRL+ + ++ L P +E+ ++ Sbjct: 80 ECGLPFLELSATTM-TTSDLKIIMETHNTQLVLFIDELHRLTKIQQDWLLPYIENGKI-- 136 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ-----VPDLQYI 192 LIGATT + T R R I+ R + ++ VP+++ + Sbjct: 137 ------------------ILIGATTVQPNST---RIRQAILSRCQIFKLEKLIVPEIKKV 175 Query: 193 VSRSARFMGLEMSDDGALE-----------VARRARGTPRIANRLLRRVRD-FAEVKHDG 240 + + F L+ + L + RA+G RIA L+ + D F + +D Sbjct: 176 LYHAIIFQNLKRKNLYQLGNIVYKSECFDLILNRAQGDCRIAINLVELISDNFVDNINDV 235 Query: 241 TISADIAAQALDMLNVDAE-GF 261 +S D Q LN + GF Sbjct: 236 ELSKDKLQQIFHSLNYNNSLGF 257 >UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desulfovibrionales RepID=C6BV47_DESAD Length = 420 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 33/212 (15%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR IRPK ++E+ GQ +R ++E F ++ +L LL+FGPPG GK+TLA ++A Sbjct: 11 LADR-IRPKKIDEFFGQNHIRERVEAFERSKRL-----PSLLLFGPPGCGKSTLAMLLAK 64 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 G + S P + A+ L D+L +DE+HR S ++ P +E Sbjct: 65 STGRHFMRISAP----ESGITALRKQLAGMDILILDELHRFSKAQQDFFLPILES----- 115 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 GE TL+ TT + S+T L R ++ RL DL I +R Sbjct: 116 --GE-------------ITLLATTTENPSFSVTRQLLSRLHVL-RLRSLGKTDLLAICNR 159 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLL 227 + + +E+S+D + A G R LL Sbjct: 160 ACEELEIELSEDSLNLITSMAGGDGRSLLNLL 191 >UniRef50_Q0EY57 ATPase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY57_9PROT Length = 448 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 32/210 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP +L++ GQP + + F + + + +GPPG+GKTTLA ++A+ G+ Sbjct: 26 IRPAVLQDVAGQPDLTAADSWF--STMVSEGRCCSCIFWGPPGVGKTTLATVMADAAGIP 83 Query: 83 LRTTSGPVLEKA--GDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 S KA D+ + +LF+DEIHR + ++VL P +ED L Sbjct: 84 FVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEIHRFNKAQQDVLLPCIEDGTL----- 138 Query: 141 EGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR 198 L+GATT + SL + L R ++ L+ Q D+ I+ R+ R Sbjct: 139 ---------------VLVGATTENPSFSLNNALLSRCRVIV-LQALQASDVAVILKRACR 182 Query: 199 FMG-----LEMSDDGALEVARRARGTPRIA 223 ++G + DD + +A + G R A Sbjct: 183 YLGDQAKAFSLDDDALVWLAENSDGDARYA 212 >UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5_PELCD Length = 726 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 11/141 (7%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 L S ++ + +RP+ LEEYVGQ + + + +A +R D L L+ +GPPG Sbjct: 3 LFSQASSFSSEPLASRMRPRTLEEYVGQDHILGEGRLLRRA--IRADQLSSLIFYGPPGT 60 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTN-------LEPHDVLFIDEIHRLS 119 GKTTLA ++AN + + VL DL + + + +LF+DE+HR + Sbjct: 61 GKTTLAQVIANSTASRFVSMNA-VLSGVKDLREAIEDARQSQEYYDKRTILFVDEVHRWN 119 Query: 120 PVVEEVLYPAMEDYQLDIMIG 140 ++ L P +E + I+IG Sbjct: 120 KSQQDALLPWVEKGTI-ILIG 139 >UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepID=Q1QXX6_CHRSD Length = 469 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 49/273 (17%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L++YVGQ + + + A+ A+ ++++GPPG+GKTTLA+I+A+ G Sbjct: 43 MRPRRLDDYVGQEALVGPGKPLRRMAE--SGAVRSMILWGPPGVGKTTLADILADASGAM 100 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDV------LFIDEIHRLSPVVEEVLYPAMEDYQLD 136 L S V+ D+ A + V LF+DEIHRL+ ++ L P +E L Sbjct: 101 LERLSA-VMAGVKDIRAAVERAREGQVRGQPTLLFLDEIHRLNKSQQDALLPHVESGLL- 158 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPL--RDRFGIVQRLEFYQVPD-LQY 191 TLIGATT S + S L R R ++++LE + L Sbjct: 159 -------------------TLIGATTENPSFEVNSALLSRARVYVLRKLETEDLLRVLHQ 199 Query: 192 IVSRSARFMGLEM--SDDGALE-VARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAA 248 ++ + R +G +D+G LE +AR A G R A LL DFAE G + Sbjct: 200 ALADTERGLGKRHIEADEGVLETLARSASGDARRALGLLETACDFAEPTEGGE---RLTL 256 Query: 249 QAL-DMLNVDAEGFD-----YMDRKLLLAVIDK 275 QAL ++L A FD Y D LL+ I K Sbjct: 257 QALHEVLGHQASAFDKQGDHYYD---LLSAIHK 286 >UniRef50_A5DZ06 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DZ06_LODEL Length = 516 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 30/167 (17%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 A+RP L YVGQ + ++ E I A +R L +L+ GPPG GKTTLA +VA G Sbjct: 24 AVRPNTLANYVGQRHLLNE-EKGIFANYIRMGYLPSMLLIGPPGSGKTTLARLVAKSCGY 82 Query: 82 ---NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 N+ S L ++ ++ + + V+FIDEIHRLS V ++ L P +ED ++ Sbjct: 83 ATSNIIELSATTL-TTENIKNLVNDCQEQLVVFIDEIHRLSKVQQDWLLPFVEDGKI--- 138 Query: 139 IGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRD-RFGIVQRLEFY 184 LIGATT L +PLR R I+ R + + Sbjct: 139 -----------------VLIGATT----LETPLRRIRKAILSRCQVF 164 >UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campylobacterales RepID=D1B0W0_SULD5 Length = 396 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 29/204 (14%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV- 81 RPK++EE GQ + + F K L+ ++ H L FGP G+GKTTLA IVAN + + Sbjct: 9 FRPKVIEELSGQKHLSGENSPFRKL--LKSGSMSHALFFGPAGVGKTTLARIVANTLQLP 66 Query: 82 --NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 L TS V E L+ L+ ++FIDEIHRLS +EVL ME+++ I+I Sbjct: 67 FYELDATSIKVEEIRKILSQHRGALQK-PLIFIDEIHRLSKTQQEVLLLPMENHE-AIVI 124 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY--QVPDLQYIVSRSA 197 G + P F L+S +R R + EFY ++ D++ I+ R Sbjct: 125 GAS-------TENPYFV----------LSSGIRSRMML---FEFYPLEMKDMEAILERVH 164 Query: 198 RFMGLEMSDDGALEVARRARGTPR 221 + ++ ++ + R + G R Sbjct: 165 EKIEFQIDEEAREYLIRSSAGDSR 188 >UniRef50_A5GNS9 ATPase related to the helicase subunit of the Holliday junction resolvase n=46 Tax=cellular organisms RepID=A5GNS9_SYNPW Length = 737 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 31/152 (20%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP+ L+E+VGQ + ++ + +A + D + +L++ GPPG+GKTTLA I+AN Sbjct: 24 LADR-LRPRNLDEFVGQGAILAEGRLLRRA--IAADRVGNLILHGPPGVGKTTLARIIAN 80 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTN----LEPH---DVLFIDEIHRLSPVVEEVLYPAM 130 + + + VL DL A ++ LE H +LFIDE+HR + ++ L P + Sbjct: 81 HTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHRFNSAQQDALLPWV 139 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATT 162 E+ L TLIGATT Sbjct: 140 ENGTL--------------------TLIGATT 151 >UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC7_9GAMM Length = 437 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 15/143 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L E++GQ ++ AA LR +L L+ +GPPG+GKTTLA+++A E G Sbjct: 13 MRPRSLAEFIGQERLLGPAGPI--AAMLRQKSLHSLVFWGPPGVGKTTLAHLLAAEQGAE 70 Query: 83 LRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + T S L A +A VLFIDEIHR + ++ L P +E+ L + Sbjct: 71 VLTLSAVDSGVRELRAAAAVATERRGRGESTVLFIDEIHRFNKTQQDALLPHLEEGTLTL 130 Query: 138 MIGEGPAARSIKIDLPPFTLIGA 160 + + P F L+GA Sbjct: 131 I--------GATTENPSFALVGA 145 >UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepID=A3DD23_CLOTH Length = 432 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 134/313 (42%), Gaps = 63/313 (20%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ LEE+ GQ ++ + ++ + ++ D + ++++GPPG GKT+LA I+AN N Sbjct: 12 MRPRTLEEFYGQEEIVGEGKLLNRM--IKADRISSIILYGPPGTGKTSLARIIANSTKAN 69 Query: 83 LR----TTSG--PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 T+G + D + N + VLFIDEIHR + ++ L P +ED + Sbjct: 70 FEKLNAVTAGVADIKRIVSDTQNPILNPKGRTVLFIDEIHRFNKSQQDALLPYVEDGTI- 128 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 L+GATT +P F++V + ++SRS Sbjct: 129 -------------------ILVGATTE-----NP------------FFEVN--KALISRS 150 Query: 197 ARFMGLEMSDDGALEVARRA-----RGTPRIANRLLRRVRDFAEVKHDGTISADIAAQAL 251 + FM + D ++ R A RG + + +F DG A IA AL Sbjct: 151 SVFMLKPLGSDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICDG--DARIALNAL 208 Query: 252 DML----NVDAEGFDYMDRKLLLAVIDKFFG-----GPVGLDNLAAAIGEERETIEDVLE 302 ++ V ++G ++D +L+ I K G DN++A I R + D Sbjct: 209 ELAVLTSPVGSDGKFHIDIQLIEECIQKKAARYDKSGEEHYDNISAFIKSMRGSDPDAAV 268 Query: 303 PYLIQQGFLQRTP 315 YL + + P Sbjct: 269 FYLARALYAGEDP 281 >UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax=candidate division TM7 RepID=UPI00016B2545 Length = 400 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 32/210 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ +++ +GQ + S+ +I K K + L+++GPPG GKTTLA I+A E N Sbjct: 10 MRPQKIKDIIGQRHLLSEGKILYKIIKQKEPV--SLILWGPPGSGKTTLARIIAKETEAN 67 Query: 83 LR----TTSGPV-LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 TSG + ++A NL+ VLF+DEIHR S V ++ P +E + Sbjct: 68 FMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIESGLI-- 125 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 TLIGATT S + +PL R ++ L+ + D+Q I+++ Sbjct: 126 ------------------TLIGATTENPSFEIITPLLSRVKVMT-LKPLEDKDIQQILTK 166 Query: 196 SARFMGLE--MSDDGALEVARRARGTPRIA 223 + + ++++ +A + G R+A Sbjct: 167 AIEKLAKSKLVTNESIEYLAHISSGDARVA 196 >UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6Q7_9ACTN Length = 454 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 9/124 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L+EYVGQ + + +++AA + D L ++++GP G GKTTLA+I+AN Sbjct: 28 MRPNSLDEYVGQQKAVGKGS-WLRAA-IEHDVLSSVILYGPAGTGKTTLAHIIANHTKSE 85 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD---VLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 V + +G V + + T L +D +LFIDEIHR S ++ L A+E+ + Sbjct: 86 FVEVSAVTGTVKDLRRVIDEAKTRLNTYDRRTILFIDEIHRFSKSQQDALLHAVENRTV- 144 Query: 137 IMIG 140 IMIG Sbjct: 145 IMIG 148 >UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellular organisms RepID=D0LV62_HALO1 Length = 463 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 14/118 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+E+VGQ + ++ + G AL L+++GPPG GKTTLA+I+A G Sbjct: 21 MRPKSLQEFVGQNHLLGPRKLLARLGP--GAALPSLILWGPPGTGKTTLAHILATRAGSR 78 Query: 83 LRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 L S ++ +AGD VLFIDEIHR S ++ L P +E Sbjct: 79 LAAISAVTAGVREMRQLVSEAGD---RRDQFGSRTVLFIDEIHRFSKAQQDALLPHVE 133 >UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q7R7_FRATN Length = 412 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 6/120 (5%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP+ ++E VGQ + SQ I K L GD + L++ G PG+GKT+LA I+A+ + Sbjct: 10 IRPQSIDEIVGQEHLLSQHGILTKI--LAGDGICSLVLCGKPGVGKTSLARIIASSKKLE 67 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 S V D+ ++T+ + D VLF+DEIHR + +++L P +E ++ I+IG Sbjct: 68 FFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGKI-ILIG 125 >UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZZ0_DICTD Length = 431 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 38/216 (17%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP+ LEE++G + + F++ A +G L L+I+GPPG GKTTL+ ++A + Sbjct: 21 MRPRTLEEFLGAEDIIGEKS-FLRKAINKG-YLPSLIIYGPPGSGKTTLSVLLAKAINAE 78 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD---VLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 + L V E L NLE ++ VLF+DEIH + + ++VL P +E Sbjct: 79 FIELNAAIVGVQELKEALQKAKRNLELYNKRTVLFLDEIHHFNKLQQDVLLPFVE----- 133 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVS 194 R I I LIGATT SL + L R +V+ L+ +++ I+ Sbjct: 134 ---------RGIMI------LIGATTENPFFSLNTTLLSRCRLVE-LKPLSKENIERIIK 177 Query: 195 RS----ARFMG---LEMSDDGALEVARRARGTPRIA 223 R+ R +G LE+++D E+ R A G RIA Sbjct: 178 RALEDKERGLGERDLEINEDAMEEIVRFANGDARIA 213 >UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacteria RepID=A7NI76_ROSCS Length = 544 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 15/127 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E+VGQ + + ++ +A + DAL ++++GPPG GKTTLA I+A+ + Sbjct: 27 MRPRALDEFVGQDHIVGEGKLLRRA--ITNDALFSIILWGPPGSGKTTLARIIADTTHAH 84 Query: 83 LRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 S V+++A D M + ++FIDEIHR + ++ + P +ED Sbjct: 85 FEQLSAVSAGVADLRRVVKEAQDRLGM---FQQRTIVFIDEIHRFNKAQQDAILPYVEDG 141 Query: 134 QLDIMIG 140 + I+IG Sbjct: 142 TI-ILIG 147 >UniRef50_A5V6U8 Recombination protein MgsA n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V6U8_SPHWW Length = 444 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 22/183 (12%) Query: 11 GTTLPEDVADRAI----RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 +++P DV R + RP +E+ VGQ + + R L ++ +GPPG+ Sbjct: 11 ASSVPCDVETRPLAERLRPTRIEDVVGQEHLTGPDAPLARMVAAR--RLSSIIFWGPPGI 68 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH------DVLFIDEIHRLSP 120 GKTTLA ++A+ +G+ S + AG L A + H VLF+DE HR + Sbjct: 69 GKTTLARLLADLVGMRFEAFSATDVTVAG-LKAAYAEAKRHLRMGKRTVLFLDESHRAAR 127 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTL-IGATTRAGSLTSPLRDRFGIVQ 179 + E L P MED + ++ A P FTL G T+RA LT D G+ Q Sbjct: 128 NITETLLPVMEDGTITAILATTEA--------PSFTLPKGITSRARVLTLNPLDTGGLTQ 179 Query: 180 RLE 182 L+ Sbjct: 180 LLD 182 >UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacillales RepID=C6D7W1_PAESJ Length = 436 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 9/120 (7%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP+ L++Y+GQ + ++ +A + GD + +L++GPPG GKTTLANI++ Sbjct: 17 LADR-MRPETLDDYIGQEHIIGAGKLLRRA--IEGDQVSSILLYGPPGCGKTTLANIISK 73 Query: 78 EMG---VNLRTTSGPVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEEVLYPAME 131 V L V + + TN +LF+DE+HR + ++ L PA+E Sbjct: 74 RTAGEFVKLNAVDASVKDVREVIDTAKTNKLMYGKKTILFLDEVHRFNTSRQDALLPAVE 133 >UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH3_SYNAS Length = 478 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 45/224 (20%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP+ L+E+ GQ + + + +A + D L ++ +GPPG GKTTLA IVA Sbjct: 41 LADR-MRPETLDEFFGQEHLLKKHSLLRRA--IEEDRLFSVIFWGPPGSGKTTLARIVAG 97 Query: 78 EMGVNLRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYP 128 E S V+E+A A N VLF+DEIHR + ++ P Sbjct: 98 ETKAYFAAFSAVLSGVKELRKVVEEA---EARWQNNRQKTVLFVDEIHRFNKAQQDAFLP 154 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQV 186 +E + TLIGATT S + +PL R ++ L+ + Sbjct: 155 HVESGLI--------------------TLIGATTENPSFEVIAPLLSRCRVLV-LKPFSD 193 Query: 187 PDLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIA 223 DL I++R R +GLE+ D + A G R A Sbjct: 194 EDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTA 237 >UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonproteobacteria RepID=A7ZAZ1_CAMC1 Length = 394 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RPK L+E GQ V++ FI +K+ H + +GP G GKT+ A VA+ + Sbjct: 8 FRPKNLDEICGQKAVKTAFLKFIATSKI-----PHSIFYGPAGCGKTSFARAVASGANYD 62 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAMEDYQ 134 G L K D +L N E + FIDEIHRLS +E L ME+Y+ Sbjct: 63 FYEFDGGNL-KIDDFRKILKNYENALNKPLFFIDEIHRLSKTQQEALLIPMENYK 116 >UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria RepID=B0CAJ0_ACAM1 Length = 742 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 11/125 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E+VGQ ++ + +A ++ D L L+ +GPPG GKTTLA I+AN + Sbjct: 22 LRPRTLDEFVGQDEIVGPGRLLRRA--IQADQLSSLIFYGPPGTGKTTLAQIIANTTQAH 79 Query: 83 LRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + VL D+ + + + +LF+DE+HR + ++ L P +E+ + Sbjct: 80 FLALNA-VLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDALLPWVENGTV 138 Query: 136 DIMIG 140 I+IG Sbjct: 139 -ILIG 142 >UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteria (class) RepID=A1SJC4_NOCSJ Length = 456 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 +SA T +A R +RP+ L+E VGQ Q+R+ + + GD LL++GPPG G Sbjct: 20 LSANTHASAPLAVR-MRPRTLDELVGQAQLRAAGSPLRRL--VEGDQSMSLLLWGPPGTG 76 Query: 68 KTTLANIVANEMG---VNLRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPV 121 KTT+A IV+ + V + S V E + A L VLF+DE+HR S Sbjct: 77 KTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRFSKA 136 Query: 122 VEEVLYPAMEDYQLDIM 138 ++ L P +E+ + ++ Sbjct: 137 QQDALLPGVENRWVTLI 153 >UniRef50_Q6BUL9 DEHA2C09570p n=2 Tax=Debaryomyces hansenii RepID=Q6BUL9_DEBHA Length = 842 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 45/184 (24%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 IRPK L E +GQ + + IK +R L +++ GPPG+GKT++A+I+A E G Sbjct: 162 IRPKSLNEVIGQTHLINNHNGTIKNF-IRLGYLPSMILHGPPGVGKTSIASILAQETGYV 220 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD-------------VLFIDEIHRLSPVVEEVL 126 V T V DL + +E + V+FIDEIHR + ++ L Sbjct: 221 FVEFSATDATV----SDLKELSITIEKENRKRSKKDMEYLRVVVFIDEIHRFTKTQQDFL 276 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 P +E FT IGATT L R R I+ R + +Q+ Sbjct: 277 LPFIES--------------------GVFTFIGATT----LKPETRIRRAIISRCQIFQL 312 Query: 187 PDLQ 190 L+ Sbjct: 313 KALE 316 >UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZU9_9BACL Length = 452 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 27/159 (16%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP L+EY+GQ + ++ +A + D + +L++GPPG GKTTLA+I+++ Sbjct: 32 LADR-MRPTSLDEYIGQEHIVGPGKLLRRA--IEADQVSSILLYGPPGCGKTTLAHIISH 88 Query: 78 EMG---VNLRTTSGP------VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYP 128 V L V+EKA + A +LF+DE+HR + ++ L P Sbjct: 89 HTKAEFVRLNAVDASVKDVREVIEKAQNDKAFYGT---KTILFLDEVHRFNSSRQDALLP 145 Query: 129 AMEDYQLDIMIG---EGP--------AARSIKIDLPPFT 156 A+E + I IG E P +RS L P T Sbjct: 146 AVEKGTI-IFIGATTENPFHYVNGALMSRSTLFQLEPLT 183 >UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6CD04_YARLI Length = 626 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 47/197 (23%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 T LPE RP+ L++ GQ ++ + + F+ ++ ++ +GPPG+GKTTL Sbjct: 123 TPLPE-----LCRPQTLDDISGQKELMAVLRRFVAYGRIPS-----IIFWGPPGVGKTTL 172 Query: 72 ANIVANEMG---VNLRTTSGPV--LEKAGDLAAMLTN-LEPHDVLFIDEIHRLSPVVEEV 125 A I+A G V L T V ++K D A L+ +LFIDE+HR S ++V Sbjct: 173 ARILAKTSGNRFVELSATQNNVADVKKVIDQANNEWKLLKRGTILFIDELHRFSKAQQDV 232 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTR------AGSLTSPLRDRFGIVQ 179 L PA+E K D+ TLIGATT G+LTS R V Sbjct: 233 LLPAVE-----------------KGDI---TLIGATTENPSFRLVGALTSRCR-----VL 267 Query: 180 RLEFYQVPDLQYIVSRS 196 L+ + D++ +V RS Sbjct: 268 TLKKLSMKDIKEVVERS 284 >UniRef50_B1HVA3 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Firmicutes RepID=B1HVA3_LYSSC Length = 75 Score = 64.3 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 49/62 (79%) Query: 4 ADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGP 63 ++R++++ + ++ + ++RP+ L +Y+GQ +V+ ++IFI+AAKLR ++LDH+L++GP Sbjct: 2 SERMMASEASGYDEQFELSLRPQRLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYGP 61 Query: 64 PG 65 PG Sbjct: 62 PG 63 >UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actinobacteridae RepID=C8XD35_NAKMY Length = 494 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 59/120 (49%), Gaps = 16/120 (13%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLR----GDALDHLLIFGPPGLGKTTLANIVANE 78 +RP+ L+E VGQ + A LR G A +L++GPPG GKTTLA +VA Sbjct: 47 MRPRTLDEVVGQ------QHLLGPGAPLRRLVQGGAPSSMLLYGPPGTGKTTLATLVAGS 100 Query: 79 MG---VNLRTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEVLYPAMED 132 G L S V E +A T L VLFIDE+HR S ++ L A+ED Sbjct: 101 TGRFFAQLSAVSAGVKEVRAVIAEATTRLRRTGEQTVLFIDEVHRFSRTQQDSLLGAVED 160 >UniRef50_Q14MF5 Hypothetical dna helicase probably c-terminal truncated protein n=1 Tax=Spiroplasma citri RepID=Q14MF5_SPICI Length = 106 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 30/118 (25%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP E+Y+GQ ++ ++I I A++ + L H+L G G+GKT L I Sbjct: 7 RPDNFEKYIGQESIKINLKIMIAASQKQQLPLKHMLFIGCSGMGKTCLMQI--------- 57 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 + D++FIDEIH +S V E LYP +ED L++++G+ Sbjct: 58 ---------------------KTFDLVFIDEIHAISQEVSEALYPVLEDNCLNLILGK 94 >UniRef50_Q043K3 Helicase subunit of the Holliday junction resolvase related ATPase n=11 Tax=Lactobacillus RepID=Q043K3_LACGA Length = 429 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 14/116 (12%) Query: 23 IRPKLLEEYVGQPQV----RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 IRPK L ++VGQ + R +I K + LL++GPPG GKT+LA I+A E Sbjct: 14 IRPKDLSQFVGQKDLIEEGRPLYQIIKKHVPIS------LLLWGPPGTGKTSLAQIIARE 67 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMED 132 L T + + KA + N P+ VL IDEIHR++ +++ L P +E+ Sbjct: 68 FDYPLATFNASIDNKAK--LTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLEN 121 >UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/replication n=9 Tax=Fusobacterium RepID=Q8RGJ6_FUSNN Length = 407 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 35/211 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+++VGQ ++ + + + + L + + +GPPG GK++L I++N + N Sbjct: 18 LRPKSLDDFVGQEKLLGKDGVITRL--ILNSTLSNSIFYGPPGCGKSSLGEIISNTLDCN 75 Query: 83 ---LRTTSGPVLEKAGDLAAMLTNLEPHD---VLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 L T+ V + + N+E ++ +LF+DEIHR + ++ L ED L Sbjct: 76 FEKLNATTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTL- 134 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVP--DLQYI 192 TLIGATT ++ + L R V EF + D+ + Sbjct: 135 -------------------TLIGATTENPYYNINNALLSR---VMVFEFKALTNEDILKL 172 Query: 193 VSRSARFMGLEMSDDGALEVARRARGTPRIA 223 + + F+ + M D + ++G RIA Sbjct: 173 IDKGLNFLNICMGDKIKEIIVDISQGDSRIA 203 >UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bacteria RepID=B8DU13_BIFA0 Length = 504 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 125/286 (43%), Gaps = 55/286 (19%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRG-DALDHLLIFGPPGLGKTTLANIVANE 78 +RP L+E VGQ V S + +A A +++FGPPG+GKTTLA+IVA + Sbjct: 23 MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVILFGPPGVGKTTLAHIVAKQ 82 Query: 79 MGVNLR----TTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 G TSG VL +A + L + VLFIDE+HR S ++ L P+ Sbjct: 83 SGRQYEELSAVTSGVKDLREVLRRAHE---RLVSQGKETVLFIDEVHRFSKSQQDALLPS 139 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT--SPLRDRFGIVQRLEFYQVP 187 +E+ + T I ATT S + PL R +V +LE + Sbjct: 140 VENRDV--------------------TFIAATTENPSFSVIKPLLSR-SVVVKLESLEPE 178 Query: 188 DLQYIVSRSA---RFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT- 241 +L+ ++ R+ R +G + + D + R A G R + +L V G+ Sbjct: 179 ELRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLTILEAA--AGAVDESGSN 236 Query: 242 ----ISADIAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGGPV 281 I+ D+ + +D+ V D G D+ D ++ A I G V Sbjct: 237 VPAEITTDVVSTVMDVAAVRYDRNGDDHYD--VISAFIKSMRGSDV 280 >UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A0RRQ8_CAMFF Length = 397 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RP + + VGQ + FIK+ K+ H L FG G GKTT+A I+A +M Sbjct: 7 FRPNNINDMVGQKDIVELFSKFIKSKKI-----PHSLFFGATGCGKTTMAKIIAKQMNYE 61 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 G L K+ D+ +++ E ++FIDE HRLS +E L ME + +M Sbjct: 62 FFELDGANL-KSEDIRKIISKFETTLYKPLIFIDEFHRLSKTQQETLLIPMEKGKCIVM 119 >UniRef50_A3LTW2 Replication factor ATPase n=1 Tax=Pichia stipitis RepID=A3LTW2_PICST Length = 786 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 52/203 (25%) Query: 22 AIRPKLLEEYVGQPQ-VRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 AIRP+ L+EY+GQ + +LR L +L++GPPG+GKTT+A+I+A E G Sbjct: 26 AIRPRSLDEYIGQKHLIDPDNGAITNFMRLR--YLPSMLLYGPPGVGKTTMASIIAEECG 83 Query: 81 ---VNLRTTSGPVLEKAGDLAAMLTNLEPHD-------------VLFIDEIHRLSPVVEE 124 V L T+ V DL + T + + V+FIDEIHR + ++ Sbjct: 84 YVFVELSATAATV----ADLRDLSTTIMAENRKRASRGEEELKVVVFIDEIHRFTVSQQD 139 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 L P +E EG F IGATT + R R I+ R++ + Sbjct: 140 FLLPYVE---------EG-----------NFVFIGATT----IDPRKRIRRAILSRVQCF 175 Query: 185 QVPDLQY-----IVSRSARFMGL 202 + L ++ R+ RF + Sbjct: 176 SLNTLNNNEVLEVLKRAMRFENI 198 >UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA20_CARHZ Length = 444 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 10/116 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E++GQ + + ++ +A + D L L+ +GPPG GKTTLA I+A+ Sbjct: 21 MRPRSLDEFIGQEHILGEGKLLRRA--ILSDRLGSLIFYGPPGTGKTTLARIIASTTKSG 78 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD-------VLFIDEIHRLSPVVEEVLYPAME 131 + + V G++ ++ + + VLFIDEIHR + ++ L P +E Sbjct: 79 FESINA-VTSGVGEIREVIKKAKEREKYYGERTVLFIDEIHRFNKAQQDALLPEVE 133 >UniRef50_D1J7Q3 ATPase, AAA family n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q3_MYCHP Length = 404 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 33/204 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRPK+LE+++ PQ Q ++F K + + + +G PG GKTT++ I+AN + VN Sbjct: 9 IRPKILEDFIC-PQ--EQKKLFQKI--IENNDYRSFIFYGKPGTGKTTISYILANALKVN 63 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + + K ++ L+ + +L IDEIHRL+ +++L P +E+ Sbjct: 64 YEYFNAAIENKED----LVHKLKLNKILIIDEIHRLNKDKQDILLPYLEN---------- 109 Query: 143 PAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSA-RF 199 DL T+ TT L LR R I++ + + DL + + + Sbjct: 110 --------DL--ITIYATTTENPYFKLNPALRSRCSIIE-ITKPTIQDLSSCLKNACLKT 158 Query: 200 MGLEMSDDGALEVARRARGTPRIA 223 G++++ D A +A +A G R A Sbjct: 159 FGVDLNKDIADYLALQANGDFRSA 182 >UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI Length = 876 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 36/218 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L +++GQ + I K + L +++GPPG GKTTLA IVA++ N Sbjct: 201 MRPTELSDFIGQESLLVGDPIVKKL--FQSPELPSFILYGPPGCGKTTLAQIVASKSNYN 258 Query: 83 LRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + S +++ D A +LFIDEIHR + + ++VL PA+E I Sbjct: 259 INALSAVGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIES---GI 315 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 +I LIGATT S L L R + ++E +L+ ++ R Sbjct: 316 II-----------------LIGATTENPSFELNGALLSRCKVF-KMEKLTKENLETLIKR 357 Query: 196 SARFMGLE------MSDDGALEVARRARGTPRIANRLL 227 + L M +D +A A G R+A +L Sbjct: 358 TLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVL 395 >UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardnerella vaginalis RepID=D2RB58_GARVA Length = 462 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 39/189 (20%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGD----ALDHLLIFGPPGLGKTTLANIVANE 78 +RP +E+ +GQ + + A + A +++FGPPG+GKTTLA IVA + Sbjct: 23 MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPPGVGKTTLAYIVARQ 82 Query: 79 MGVNLR----TTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 G TSG VL++A + +++N + VLFIDE+HR S ++ L P+ Sbjct: 83 SGRVFEELSAVTSGVKDVRAVLDRAHE--RLVSNGQ-ETVLFIDEVHRFSKSQQDALLPS 139 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIVQRLEFYQVP 187 +E+ + T IGATT + S+ PL R +V +L V Sbjct: 140 VENRDV--------------------TFIGATTENPSFSIIKPLLSR-SVVVKLASLSVE 178 Query: 188 DLQYIVSRS 196 DL ++ R+ Sbjct: 179 DLHTLIERA 187 >UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4_GEOSL Length = 440 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 38/216 (17%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+EYVGQ + + ++ + + D L L+ +GPPG GKTTLA ++AN + Sbjct: 22 MRPRTLDEYVGQEHLLGEGKLLRRL--IESDTLTSLIFWGPPGSGKTTLARVIANATKSH 79 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP-------HDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 S +L ++ ++ E + +LF+DEIHR + ++ P +E Sbjct: 80 FIFFSA-ILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVER--- 135 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIV 193 FT+IGATT S + +PL R ++ Q Q + Sbjct: 136 -----------------GTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILR 178 Query: 194 S------RSARFMGLEMSDDGALEVARRARGTPRIA 223 S R GL DD +A ++ G R+A Sbjct: 179 SALADPERGLGASGLAADDDALAFMAEQSGGDGRVA 214 >UniRef50_D1B930 AAA ATPase central domain protein n=2 Tax=Synergistaceae RepID=D1B930_THEAS Length = 421 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 22/139 (15%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQ---MEIFIKAAKLRGDALDHLLIFGPPGLGK 68 T LPE +RP+ L+EYVGQ + + + + I + LR +++GPPG+GK Sbjct: 9 TPLPER-----MRPRSLDEYVGQEHLLGEGGPLRLLISSNSLRS-----CILYGPPGVGK 58 Query: 69 TTLANIVANEMG-----VNLRTTSGPVLEKAGDLAAMLTNL--EPHDVLFIDEIHRLSPV 121 TTL ++A G +N T+ L D AA LT++ EP + F+DEI+ + Sbjct: 59 TTLVRLMATTTGRELLEINAVTSKLSDLRALADRAASLTSMGFEP-PIAFVDEIYHFNSQ 117 Query: 122 VEEVLYPAMEDYQLDIMIG 140 + VL P +E Q+ +++G Sbjct: 118 QQNVLLPFVESGQM-VLVG 135 >UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7J3_PHYIN Length = 499 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 30/152 (19%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L + VGQ ++ + + + D + +++++GPPG GKTTLA++++ + G Sbjct: 90 MRPTDLNDLVGQEELLGPGSLL--STLIEADRVPNMILWGPPGCGKTTLAHVISKKTGCK 147 Query: 83 LRTTSGPVLEKAGDLAAMLTN-------LEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + SG KAGD+ + ++F+DEIHR + + ++ P +ED + Sbjct: 148 FISLSG-ATSKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPPVEDGTI 206 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSL 167 TLIGATT S Sbjct: 207 --------------------TLIGATTENPSF 218 >UniRef50_C9KPY4 Replication-associated recombination protein A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPY4_9FIRM Length = 462 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 58/232 (25%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R +RP+ +E+VGQ + + + ++ D + ++ +GPPG GKTTLA ++A Sbjct: 44 RRMRPRNFDEFVGQQEAVGRGHFLRRMIEM--DQIPSIIFYGPPGTGKTTLAQMIA---- 97 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNL--------------EPHDVLFIDEIHRLSPVVEEVL 126 + EK ++A +++L + ++FIDEIHR + ++VL Sbjct: 98 ----AMTDSAFEKLNAVSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVL 153 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFY 184 P +ED +L LIGATT + L R IV+ Y Sbjct: 154 LPYVEDGRL--------------------ILIGATTENPFFEVNHALLSRVRIVR---LY 190 Query: 185 QVPDLQYI-VSRSA-----RFMG---LEMSDDGALEVARRARGTPRIANRLL 227 Q+ D Q + V R A R +G +E+ D+ L +A+ A G R+A LL Sbjct: 191 QLTDAQLVEVLRRALKDEERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLL 242 >UniRef50_D2LDV0 Holliday junction DNA helicase RuvB domain n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDV0_RHOVA Length = 77 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 37/49 (75%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 ED + ++RP+ L E++GQ Q R+ M++FI AA+ RG+ALDH+L GPP Sbjct: 13 EDAGELSLRPQRLAEFIGQAQARANMKVFIDAARARGEALDHVLFAGPP 61 >UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillonellaceae RepID=D1BNC9_VEIPT Length = 433 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 9/124 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA---NEM 79 +RP L+ GQ + + F++A + D + +L +GP G GKTTLA I+A N Sbjct: 20 MRPTKLDHLYGQEKAIGK-GTFLRAM-VEKDTIPSMLFYGPCGTGKTTLAGIIAKVSNSH 77 Query: 80 GVNLRTTSGPVLEKAG---DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 VNL T+ + E D + +L+ +LF+DEIHR + ++VL P +ED + Sbjct: 78 FVNLNATNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDVLLPCVEDGTI- 136 Query: 137 IMIG 140 I+IG Sbjct: 137 ILIG 140 >UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-like ATPase n=2 Tax=Brachyspira RepID=C0R1V7_BRAHW Length = 431 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP +EE GQ + + + K + D + ++ FGPPG+GK+T+A+I+A + Sbjct: 18 MRPLTIEEVFGQHHILDKNKTLRKM--IDNDKITSMVFFGPPGVGKSTVASIIAKKTKSE 75 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLE--PHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + L V E + NLE +LFIDEIHR + ++ L PA+E+ + I Sbjct: 76 YIKLNAVLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAVENGSI-I 134 Query: 138 MIG 140 +IG Sbjct: 135 LIG 137 >UniRef50_Q4SLJ4 Chromosome 15 SCAF14556, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SLJ4_TETNG Length = 499 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 13/128 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP LEEY GQ +V Q + + L + + +++GPPG GKTTLA+I+A + Sbjct: 165 LRPDTLEEYFGQNKVIGQQTLL--RSLLESEEIPSFILWGPPGCGKTTLAHIIAGKCKRK 222 Query: 81 -----VNLRTTSGPVL---EKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 V L TS V E L + VLFIDEIHR + ++ P +E Sbjct: 223 GTARFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQDTFLPHVEC 282 Query: 133 YQLDIMIG 140 + I+IG Sbjct: 283 GTV-ILIG 289 >UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E131_METI4 Length = 454 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 16/119 (13%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLR----GDALDHLLIFGPPGLGKTTLANIVANE 78 +RP+ LEE VGQ +I + LR D + L+++GPPG GKTTLA I+A + Sbjct: 26 MRPRTLEELVGQE------DILLPGKPLRRLIDADRIQSLILYGPPGTGKTTLAEIIAKK 79 Query: 79 MGV------NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + + + G A + H +LFIDEIHR + ++VL P +E Sbjct: 80 TKSFFARLNAVEAGVSDIRKVIGQAALRWKKEKKHTLLFIDEIHRFNKSQQDVLLPDLE 138 >UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria RepID=Q2J818_FRASC Length = 519 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 10/116 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E VGQ + + + G A ++++GPPG GKTTLA+IV+ G Sbjct: 57 LRPRTLDEVVGQRHLLGPGSPLRRL--VEGGATTSVVLWGPPGTGKTTLAHIVSRATGRR 114 Query: 83 LRTTSGPVLEKAGDLAAM-------LTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 R S V D+ A+ L+ VLFIDE+HR + ++ L P++E Sbjct: 115 FRELSA-VTAGVKDVRAVIDEARETLSTSGARTVLFIDEVHRFTRTQQDALLPSVE 169 >UniRef50_C4YKF6 Putative uncharacterized protein n=2 Tax=Candida albicans RepID=C4YKF6_CANAL Length = 552 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%) Query: 22 AIRPKLLEEYVGQPQ----VRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 AIRP E+YVGQ + + FIK L ++ GP G+GKTTLA++++ Sbjct: 29 AIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPS-----MIFTGPSGIGKTTLASVISY 83 Query: 78 EMGV-------------NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 E G+ +L+TT +K E VLFIDE+HRL+ + ++ Sbjct: 84 ECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143 Query: 125 VLYPAMEDYQLDIMIGEG---PAAR---SIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 178 L P +E+ ++ ++IG P R +I F L T + F + Sbjct: 144 WLLPYLENGEI-VLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAITFQNL 202 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRD 232 +R YQ+ + Y + G++ D L+ RA+G RIA L+ + D Sbjct: 203 KRKHLYQLGAIVYDDDDEEQGDGVDECFDLILD---RAQGDCRIAINLIELISD 253 >UniRef50_Q236J5 ATPase, AAA family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q236J5_TETTH Length = 719 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 30/235 (12%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 +IE + + +A ED+A + + ++E + P + Q+ I+A +G LL+ Sbjct: 420 LIENEIVENAANVKWEDIAGLSSAKESVKETIVWPMLNPQIFTGIRAPP-KG-----LLL 473 Query: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDVLFI 112 FGPPG GKT + +AN+ G + S L EK + L + V+FI Sbjct: 474 FGPPGTGKTMIGKAIANQSGSTFFSISASSLTSKYIGEGEKMVKILFKLAEMRQPSVIFI 533 Query: 113 DEIHRLSPVVEEVLYPAMEDYQLDIMIG-EGPAARSIKIDLPPFTLIGATTRAGSLTSPL 171 DEI L +E A + + ++ EG +R + LIGAT R L + Sbjct: 534 DEIDSLLCARQENENEASRRIKTEFLVQMEGATSR----EEVRLLLIGATNRPQELDDAV 589 Query: 172 RDRFGIVQRLEFYQVPDL--------QYIVSRSARFMGLEMSDDGALEVARRARG 218 R RF V++L + +P++ + I SA+ +MSD LEV + +G Sbjct: 590 RRRF--VKKL-YIPLPNMVAREQLIRRVIERESAKGNAFDMSDQDILEVVQATKG 641 >UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase n=8 Tax=Lactobacillus RepID=C2HPK6_LACAC Length = 478 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 31/220 (14%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 T + +AD +RPK L E VGQ + ++ + + ++ L LL++GPPG GKTTLA Sbjct: 51 TFKQPLAD-LMRPKTLGEMVGQNHLLAKGKPLYQI--IKEHILLSLLLWGPPGCGKTTLA 107 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 +++ + + + + K+ + + + VL +DEIHRL+ +++ L P +E+ Sbjct: 108 YVMSQTLRLPFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLEN 167 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP--D 188 + L+G TT S+ +R R Q EFY + D Sbjct: 168 GHV--------------------LLVGTTTENPIMSIQPAIRSR---CQIFEFYPIKAED 204 Query: 189 LQYIVSRSA-RFMGLEMSDDGALEVARRARGTPRIANRLL 227 ++ ++ ++A + ++ A +A G R++ +L Sbjct: 205 IELVLIKAAEEHLNFDLPKKQAHAIANSGNGDVRVSLNIL 244 >UniRef50_B0EGY1 ATPase WRNIP1, putative n=2 Tax=Entamoeba RepID=B0EGY1_ENTDI Length = 482 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 12/130 (9%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE----- 78 RPK LE+ +GQ F + + D+L ++FGPPG GKTT+A I+ N Sbjct: 36 RPKRLEDIIGQESAIGIGTPF--NSMILNDSLQSTILFGPPGSGKTTIARIIKNMSNSFF 93 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHD-VLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + ++ TTS L+ + A E D +LF+DEIH L+ + +++ PA+E+ + I Sbjct: 94 VQISSVTTSKEELKNVIEQAKERKKREKKDTILFVDEIHTLNKLQQDIFLPAIENGSI-I 152 Query: 138 MIG---EGPA 144 +IG E P+ Sbjct: 153 LIGATTENPS 162 >UniRef50_C7LWR1 AAA ATPase central domain protein n=3 Tax=Desulfovibrionales RepID=C7LWR1_DESBD Length = 430 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 9/117 (7%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RP+ L++++GQ R ++ +++ L LL+FGPPG GK+T+A ++A Sbjct: 24 SLRPESLDDFIGQSHFRQRLRTLMQSKDL-----PSLLLFGPPGCGKSTVALLLAKHADK 78 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 S P + + A+ ++ ++L +DE+HR S ++ P +E +L ++ Sbjct: 79 PFVRVSAPEV----GITALRKQIQDKEILILDELHRYSKAQQDFFLPLLETGELTLI 131 >UniRef50_A9ULW2 Putative uncharacterized protein n=1 Tax=Xenopus laevis RepID=A9ULW2_XENLA Length = 339 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 41/205 (20%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +AD+ +RP L Y+GQ +V + + L+ + + ++++GPPG GKTTLA+I+A Sbjct: 150 LADK-MRPTTLNNYMGQNKVLGENTMLRNL--LQANDIPSIILWGPPGCGKTTLAHIIAK 206 Query: 78 EMG------VNLRTTSGPV------LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125 V L TS +++A + + + +LF+DEIHR + + ++ Sbjct: 207 NAQKSSSRFVTLSATSASTSDVREFIKQAQNEQRL---FKRKTILFVDEIHRFNKMQQDT 263 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEF 183 P +E + TLIGATT S + + L R ++ LE Sbjct: 264 FLPHVECGTI--------------------TLIGATTENPSFQVNTALLSRCRVI-VLEK 302 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDG 208 V ++ I+ R+ +GL++ DG Sbjct: 303 LSVEAMETILMRAVDSLGLKVLKDG 327 >UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacteroidetes RepID=A5FMX8_FLAJ1 Length = 425 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 13/118 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP+ LE+Y+ Q + + ++ + L+ +GPPG GKTTLA I+A E Sbjct: 9 IRPRTLEDYISQSHLVGPNGSLTQ--QISKGIIPSLIFWGPPGTGKTTLAQIIAQESKRP 66 Query: 83 LRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 S V+EKA + T P +LFIDEIHR S ++ L A+E Sbjct: 67 FYELSAINSGVKDIRDVIEKAKQSGGLFTAKNP--ILFIDEIHRFSKSQQDSLLAAVE 122 >UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria RepID=B5Y9V9_COPPD Length = 459 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 37/215 (17%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E VGQ + + + K + D L L+++GPPG+GKT++A ++AN Sbjct: 24 MRPRTLDEIVGQDKAFGKGTLLRKL--IEEDKLTSLVLWGPPGVGKTSIAMVIANTTKAR 81 Query: 83 L----RTTSG-PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 TSG +++ + A + N+ V+F+DEIH + ++ P +E Sbjct: 82 FLRFSAVTSGIKEIKEVLEDAEVQFNMGRRTVIFVDEIHHFNKTQQDAFLPYVEK----- 136 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 LI ATT S + SPL R +V LE + D++ I+ R Sbjct: 137 ---------------GAVVLICATTENPSFEIISPLLSRSKVVV-LEPLEAEDIKTILYR 180 Query: 196 S----ARFMGLE---MSDDGALEVARRARGTPRIA 223 + R +G E ++D+ + +A + G RIA Sbjct: 181 ALADKERGLGNERVVITDEQLMRIAVYSDGDARIA 215 >UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endopterygota RepID=Q17P00_AEDAE Length = 560 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 36/179 (20%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 G+ +P +A++ +RP L +Y+GQ Q+ + + + + ++++GPPG GKTT Sbjct: 133 GSNIP--LAEK-MRPDELSDYIGQEQIIGKNTVL--RTLFEKNTIPSMILWGPPGCGKTT 187 Query: 71 LANIVANEMG-------VNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPV 121 LA+I+A V L T V +++A LA + ++F+DEIHR + + Sbjct: 188 LAHIIAAHCKKHGSMKFVKLSATMSGVNDVKEAVKLAKNDLAFKRKTIMFMDEIHRFNKL 247 Query: 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIV 178 +++ P +E + TLIGATT + SL S L R ++ Sbjct: 248 QQDIFLPHVESGTI--------------------TLIGATTENPSFSLNSALLSRCRVI 286 >UniRef50_A5DKE6 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DKE6_PICGU Length = 572 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 17/139 (12%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L +Y+GQ + + I +R L +++ GPPG+GKTTLA+I+A E G Sbjct: 90 VRPSSLHQYIGQNHLTNHRNGAITNF-IRLGYLPSMILHGPPGVGKTTLASIIAKEAGYV 148 Query: 81 -VNLRTTSGPV------LEKAGDLAAMLTNL-EPH--DVLFIDEIHRLSPVVEEVLYPAM 130 V L T V + D T L PH +FIDEIHR S V ++ L P + Sbjct: 149 MVELSATDATVSTIRRLSNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQDFLLPFV 208 Query: 131 EDYQLDIMIGE---GPAAR 146 E+ L + +G PA R Sbjct: 209 EE-GLFVFLGATTFNPATR 226 >UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria RepID=Q480Q0_COLP3 Length = 511 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 62/134 (46%), Gaps = 15/134 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L +YVGQ + A + L+ +GPPG GKTTLA I+A Sbjct: 63 MRPKTLADYVGQQHILGGDSPL--AQSIEQGHCHSLIFWGPPGSGKTTLAEIIAQHANAE 120 Query: 83 LR----TTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 + TSG +EKA A + VLF+DE+HR + ++ P +ED Sbjct: 121 IERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFLPHIEDG 180 Query: 134 QLDIMIG---EGPA 144 + I IG E PA Sbjct: 181 TI-IFIGATTENPA 193 >UniRef50_A7C725 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Beggiatoa sp. PS RepID=A7C725_9GAMM Length = 59 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 3/60 (5%) Query: 2 IEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF 61 IE DRLIS + D+AIRP+ LE+Y GQP+V QMEIFI AAK RG HL+ + Sbjct: 3 IETDRLISPIDNSEDRAIDKAIRPRRLEDYAGQPRVCEQMEIFIPAAKSRG---RHLITY 59 >UniRef50_A5DW03 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DW03_LODEL Length = 839 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 14/118 (11%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 +RPK L++++GQ ++ + + I+A D + L++GPPG GKTT+A I+A Sbjct: 187 VRPKTLDDFIGQEKLVGENAPLRNLIQA-----DLIPSFLLWGPPGCGKTTIARIIAKST 241 Query: 80 GVNLRTTSG--PVLEKAGDLAAMLTNLEP----HDVLFIDEIHRLSPVVEEVLYPAME 131 SG + D A NL+ +LF+DEIHR + V+++L P +E Sbjct: 242 DYRYVELSGADSNAKSLKDAFAQADNLKKLTGQRTILFLDEIHRYNKAVQDLLLPVIE 299 >UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4 Tax=Eukaryota RepID=B6KHT5_TOXGO Length = 1101 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 53/247 (21%) Query: 23 IRPKLLEEYVGQPQV----RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 +RP LEEYVGQ R + ++A L L+++GPPG GKTT+A + Sbjct: 609 LRPASLEEYVGQRGCIQGGRGSIRELLEAGHL-----PSLILWGPPGCGKTTIALLAGRS 663 Query: 79 MGVNLRTTS--GPVLEKAGDLAAMLTNL--------------EPHDVLFIDEIHRLSPVV 122 +G S PV +K + + ++ + VLF+DEIHR + Sbjct: 664 VGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNKAQ 723 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQR 180 ++ L P +E + TLIGATT S + L R + + Sbjct: 724 QDALLPHVETGTI--------------------TLIGATTENPSFEVNRALLSRCRVC-K 762 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 LE DL I+ R+A+ + +++ + R A G R A +L + H+ Sbjct: 763 LEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENA-----IHHER 817 Query: 241 TISADIA 247 T + + A Sbjct: 818 TANENKA 824 >UniRef50_P0AAZ6 Replication-associated recombination protein A n=338 Tax=cellular organisms RepID=RARA_ECO57 Length = 447 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 37/232 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L +Y+GQ + + + +A + L ++++GPPG GKTTLA ++A + Sbjct: 20 MRPENLAQYIGQQHLLAAGKPLPRA--IEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 Query: 83 LR----TTSG-PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + TSG + +A + A N +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI-- 135 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 T IGATT S L S L R V L+ D++ ++++ Sbjct: 136 ------------------TFIGATTENPSFELNSALLSR-ARVYLLKSLSTEDIEQVLTQ 176 Query: 196 S----ARFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 + R G + + D+ +A G R A L + D AEV G Sbjct: 177 AMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSG 228 >UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MFE6_CANTT Length = 698 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 18/120 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRG----DALDHLLIFGPPGLGKTTLANIVANE 78 +RPK L+++ GQ + + K LR D + L++G PG+GKT+LA I+A Sbjct: 166 LRPKTLDDFFGQEK------LLGKDGALRNMIQSDIIPSFLLWGVPGIGKTSLARIIAKN 219 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHD-------VLFIDEIHRLSPVVEEVLYPAME 131 SG + A +L + E H +LF+DEIHR + V+++L P +E Sbjct: 220 SRCKFVELSG-IDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVIE 278 >UniRef50_A5IXK5 ATPase, AAA family n=2 Tax=Mycoplasma RepID=A5IXK5_MYCAP Length = 404 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 9/109 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L++ +GQ +S +E+ K A R + FG G GKT+ A +AN++G+ Sbjct: 8 LRPKTLDDIIGQ---KSVVELLKKVA--RDKIYSSFIFFGESGTGKTSAAVALANDLGLK 62 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + V KA +L ML + +DVL IDEIHRL+ +++L +E Sbjct: 63 YDYFNASVNSKA-ELIKMLAD---NDVLIIDEIHRLNKDKQDILLSYLE 107 >UniRef50_B3GAM6 AMDV4_5 n=1 Tax=uncultured virus RepID=B3GAM6_9VIRU Length = 294 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RP+ L+E VGQ ++ + F K H++ +GPPG+GKTT+A+ +ANE + Sbjct: 7 FRPQNLDEVVGQERI---VTFFRNLGKSDISKWPHVIFYGPPGVGKTTMAHAIANEYDIE 63 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHRLSPVVEEVLYPAMEDY 133 + + K D+ + ++ +LF+DE L+P + +L MEDY Sbjct: 64 IIDMNASQYRKIDDMENQIFSIVKQIPEKGARKILFMDEADALTPNSQWLLRRMMEDY 121 >UniRef50_C4Y4G1 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y4G1_CLAL4 Length = 548 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 53/192 (27%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA---NEM 79 IRP L++YVGQ + + I + G L ++++GPPG+GKTTLA+I+A N + Sbjct: 23 IRPSSLKDYVGQEHLIDSDDGAISSFLTLG-ILPSMILYGPPGVGKTTLAHILAAETNHV 81 Query: 80 GVNLRTTSGPV----------------LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 + L T + +++GDL + V+FIDEIHR S + Sbjct: 82 FLELSATDSTIGDMREISQAIRQENGKRDRSGDLHLKV-------VVFIDEIHRFSTTQQ 134 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 + L P +E G+ F IGATT + R R I+ R + Sbjct: 135 DFLLPFVE-------AGD-------------FVFIGATT----VNPEKRIRRAILSRCQL 170 Query: 184 YQVP--DLQYIV 193 + + D+Q+IV Sbjct: 171 FSLRKLDIQHIV 182 >UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase n=8 Tax=Actinobacteridae RepID=Q6A8J0_PROAC Length = 461 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA---NEM 79 +RP+ ++E VGQ + + + A+ G + ++GPPG+GKTT+A++V+ N Sbjct: 35 LRPRTIDEIVGQQHLLTPGSPLRRLAE--GTGAMSVFLWGPPGVGKTTIASVVSHATNRR 92 Query: 80 GVNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 V + + V + + D A L VLF+DE+HR S ++VL PA+E+ + + Sbjct: 93 FVEISAVTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENRTVTL 152 Query: 138 M 138 + Sbjct: 153 I 153 >UniRef50_C4Z9V9 Holliday junction DNA helicase B n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9V9_EUBR3 Length = 79 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 44/66 (66%) Query: 6 RLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPG 65 R+IS + ++++RP ++Y+GQ +++ ++I+I+AAK RG+ALDH+L +GP Sbjct: 3 RVISTQLQEEDIKIEKSLRPMYFDDYIGQQKIKDNLKIYIEAAKSRGEALDHVLFYGPRD 62 Query: 66 LGKTTL 71 L + L Sbjct: 63 LERQHL 68 >UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopobium RepID=C8W9U5_ATOPD Length = 443 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 9/124 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L+ YVGQ KA + D L +L++GP G GKTTLA I+A+ Sbjct: 23 MRPTTLDGYVGQEDAVGPGSWLRKA--IEHDTLSSVLLYGPAGTGKTTLARIIAHTTHAE 80 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 V + +G V + ++ A + L +LFIDEIHR + ++ L A+ED ++ Sbjct: 81 FVEVSAITGTVKDLRREIEAAESRLLTAGRRTILFIDEIHRFTRSQQDALLHAVED-RIV 139 Query: 137 IMIG 140 ++IG Sbjct: 140 VLIG 143 >UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Proteobacteria RepID=C6C7V1_DICDC Length = 447 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 35/231 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV-----AN 77 +RP L +Y+GQ + + +A + L ++++GPPG GKTTLA ++ A+ Sbjct: 20 MRPTTLAQYIGQQHLLGPGKPLPRA--IEAGQLHSMILWGPPGTGKTTLAELIGRYGEAD 77 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 ++ T+ + +A + A N +LF+DE+HR + ++ P +ED + Sbjct: 78 VERISAVTSGIKDIREAVERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTV-- 135 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPL--RDRFGIVQRLEFYQVPDL--QY 191 T IGATT S L S L R R +++ L+ + + Q Sbjct: 136 ------------------TFIGATTENPSFELNSALLSRARVYLLKSLDTADIEQVLAQA 177 Query: 192 IVSRSARFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 +V R G + + D+ +A G R A LL + D AEV DG Sbjct: 178 MVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEVDADG 228 >UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4P896_USTMA Length = 566 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 30/147 (20%) Query: 23 IRPKLLEEYVGQPQV-RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 +RP+ L+EYVGQ V +++ ++ K+ ++++GPPG GKTTLA ++A Sbjct: 32 MRPQTLDEYVGQSDVVNGPLKMLLRQGKIPS-----MILWGPPGTGKTTLARLLAKSASS 86 Query: 82 NLRTT-SGPVLEKAGDLAAMLTNLEPHDV-------------------LFIDEIHRLSPV 121 T GP + +++A TN +DV LFIDEI R + Sbjct: 87 TDSTCRQGPPPHRFVEISA--TNSGANDVKKILDEALHRLELTAQRTLLFIDEIQRFNRA 144 Query: 122 VEEVLYPAMEDYQLDIMIG--EGPAAR 146 ++VL PA+E Q+ ++ E P+ R Sbjct: 145 QQDVLLPAVEKGQIVLVAATTENPSFR 171 >UniRef50_UPI0001743224 Holliday junction DNA helicase B n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743224 Length = 75 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 36/47 (76%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 ++RP+ EY+GQ +++ +++ IKA K R + LDH+L++GPPGLGK Sbjct: 24 SLRPQNFSEYIGQDRLKKNLQLAIKATKKRNEPLDHVLLYGPPGLGK 70 >UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase interacting protein n=1 Tax=Tribolium castaneum RepID=UPI0000D57862 Length = 494 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 41/204 (20%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 + ++PK L++++GQ V + + ++ +GD + +++++GPPG GKT+L+ ++ Sbjct: 96 KQLQPKCLDDFMGQSHVLGENTV-LRTLLEKGD-IPNMVLWGPPGCGKTSLSGVIQGICK 153 Query: 81 VN---------LRTTSG-PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 N T+G ++ A + VLF+DEIHR + Sbjct: 154 SNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFN----------- 202 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT--SPL--RDRFGIVQRLEFYQV 186 Q DI + + ++ L+GATT S T S L R R ++Q+L+ Sbjct: 203 -KKQQDIFL--------LHVEKGDIILVGATTENPSFTVNSALLSRCRVIVLQKLD---- 249 Query: 187 PDLQY-IVSRSARFMGLEMSDDGA 209 PD Y I+ R AR +E+ D GA Sbjct: 250 PDCLYQILERGARNFNVEVVDKGA 273 >UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LS10_PICSI Length = 721 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 16/127 (12%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L++E VGQ + + I + L D + ++ +GPPG GKTTLA +AN + Sbjct: 211 MRPLLVDEVVGQDHLLGKNCIL--RSLLECDRVPSIVFWGPPGTGKTTLARAIANSVSYR 268 Query: 83 LRT----TSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 + TSG VLE+A + M + F+DE+HR + ++ P +ED Sbjct: 269 FSSVSAVTSGLKEVREVLEEAKRMKKM----GQRTLFFVDEVHRFNKAQQDAFLPVVEDG 324 Query: 134 QLDIMIG 140 + + IG Sbjct: 325 SI-VFIG 330 >UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba RepID=C4LTC0_ENTHI Length = 611 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 13/130 (10%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RPK LE+ +GQ + + F ++ D + +++GPPG GKTT+A I+ N Sbjct: 50 RPKNLEDIIGQEDILAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIKNNSKSTF 107 Query: 84 RTTSGPVLEKAGDLAAMLTNLEP------HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + S K D ++ + + + +LF+DEIH L+ + ++ PA+E + I Sbjct: 108 ISMSAAS-SKKEDFKKVINDAKHRKRMGINTILFLDEIHSLNRLQQDTFLPAIESGTI-I 165 Query: 138 MIG---EGPA 144 +IG E P+ Sbjct: 166 LIGATTENPS 175 >UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K0_FLAB3 Length = 442 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 18/134 (13%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+E GQ + + K L D L+ L+ +GPPG GKTT+A I++ + G Sbjct: 28 MRPKTLDEVRGQEHLTGEKGTVRKM--LENDTLNSLIFWGPPGTGKTTIAEIISEQSGRK 85 Query: 83 LRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 S V+E+A + + P +LFIDEIHR + ++ L A+E Sbjct: 86 FFKLSAVSSGVKDVREVIEEAKK-QNLFSGKSP--ILFIDEIHRFNKSQQDSLLHAVEKG 142 Query: 134 QLDIMIG---EGPA 144 + ++IG E P+ Sbjct: 143 WI-VLIGATTENPS 155 >UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6BHR7_DEBHA Length = 786 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+EY GQ ++ + I ++ D + +++G PG+GKT+LA I++ Sbjct: 198 LRPKSLDEYYGQEKLVGENGILKNI--IKSDQIPSFILWGVPGVGKTSLARIISQTSNCK 255 Query: 83 LRTTSGP--VLEKAGDLAAMLTNLE----PHDVLFIDEIHRLSPVVEEVLYPAME 131 SG ++ ++ M N +LF+DEIHR + V+++L P +E Sbjct: 256 FLEVSGAEGNAKRLREVFTMADNERRLTGRKTILFLDEIHRFNKAVQDLLLPVIE 310 >UniRef50_A9BGH8 AAA ATPase central domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGH8_PETMO Length = 411 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 14/130 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 IRPK ++E +G +++ ++ +IK K+R +I+G PG GK+T+ + NE+ Sbjct: 11 IRPKKVDEVLGNEKLKEILKTWIKNKKVRS-----FIIYGEPGSGKSTIVRALINEIKDY 65 Query: 81 VNLRTTSGPV--LEKAGDLAAMLTNL--EPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 ++ + SG + +K D+ NL +P +LF+DEIHRL+ ++ L ++E +L Sbjct: 66 YDVFSISGAIEGKKKIKDIIEQKNNLFTKPK-LLFVDEIHRLNKAEQDTLLLSVETGELT 124 Query: 137 IM--IGEGPA 144 ++ E PA Sbjct: 125 LIGATTENPA 134 >UniRef50_C9LYM2 ATP-dependent protease, Lon family n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYM2_9FIRM Length = 684 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 101/244 (41%), Gaps = 74/244 (30%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM--- 79 +RPK LEE VGQ + + A+KL HLL++GPPG+GKTT A IV + Sbjct: 175 LRPKTLEEVVGQERAVKAL-----ASKLASPYPQHLLLYGPPGVGKTTAARIVLEAVKKE 229 Query: 80 ---------------GVNLRTTS------------GPVLEKA-GDLA---------AMLT 102 G LR S P+ + A DLA M+T Sbjct: 230 AHSPFAENAPFVETDGTTLRWDSRDMTNPLLGSVHDPIYQGARRDLADGGIPEPKPGMVT 289 Query: 103 NLEPH-DVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPP------- 154 E H +LFIDEI + +++ L +ED + E +PP Sbjct: 290 --EAHGGILFIDEIGEMDEMLQNKLLKVLEDKR---AFFESAYYDHTDEKVPPYIRKLFE 344 Query: 155 ------FTLIGATTRAGSLTSP-LRDRFGIVQRLEFYQVP----DLQYIVSRSARFMGLE 203 F LIGATTR S +P LR R E Y P ++ IV +A+ + +E Sbjct: 345 EGAPADFVLIGATTRDASHVNPALRSRCA-----EIYFEPLTPKHIEEIVQNAAKKLKVE 399 Query: 204 MSDD 207 ++++ Sbjct: 400 VAEE 403 >UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria RepID=Q3B4X4_PELLD Length = 457 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 25/195 (12%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S+G + +A+R +RP+ ++E GQ + M + L G L ++ +GPPG GK Sbjct: 18 SSGAGAFQPLAER-VRPQSIDEMAGQEHLVGPMGPLRRF--LGGGQLPSMIFWGPPGSGK 74 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEP------HDVLFIDEIHRLSPVV 122 TTLA I A+ + S + D+ +L N +LFIDEIHR + Sbjct: 75 TTLAEICASALDFRFEQLSA-IESGVKDVRRVLENAASSRARGIRTLLFIDEIHRFNKSQ 133 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKID--------------LPPFTLIGATTRAGSLT 168 ++ L A+E + ++IG S +I+ L P + TRA S+ Sbjct: 134 QDTLLHAIEQ-GVVVLIGATTENPSFEINAALLSRMQVYTLKSLGPEDIRLVVTRALSVD 192 Query: 169 SPLRDRFGIVQRLEF 183 RDR V+ +EF Sbjct: 193 PLFRDRHVQVEDMEF 207 >UniRef50_C7M3A0 AAA ATPase central domain protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M3A0_ACIFD Length = 370 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 33/214 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L E +GQ R+++E A + +++ GPPG+GKTT+A+++A G Sbjct: 18 LRPTSLAEVLGQDHARARLEALATAPRTIA-----VIMTGPPGVGKTTIASLLARARGEH 72 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 V L T V + A D + F+DE+HR QLD+ Sbjct: 73 LVELHATDTGVRDLREARAEAARRARHGDGTLWFVDEVHRFG------------RTQLDL 120 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 ++ I+ + IGATT A +L+ L R +V RL + P L+ + R Sbjct: 121 LLA--------PIERGEISFIGATTENPAVTLSPALLSRCDVV-RLRALEPPVLRAVAER 171 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRR 229 + +GL D + ARG R R+L R Sbjct: 172 ALAHLGLIADDAAIAWLVAAARGDARALLRILER 205 >UniRef50_O14325 Uncharacterized AAA domain-containing protein C16E9.10c n=19 Tax=Dikarya RepID=YB7A_SCHPO Length = 779 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 75/179 (41%), Gaps = 27/179 (15%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP----------------VLEKAGDLAAML 101 +L+ GPPG GKT LAN +ANE+GV + S P V E+A LA L Sbjct: 211 VLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCL 270 Query: 102 TNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGAT 161 +FIDEI ++P E ME + + K D P +IGAT Sbjct: 271 --------MFIDEIDAVTPKRESAQR-EMERRIVAQFLTCMDELSFEKTDGKPVLVIGAT 321 Query: 162 TRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTP 220 R SL S LR R G R VP Q + R M + G + + A+ TP Sbjct: 322 NRPDSLDSALR-RAGRFDREICLTVPS-QDAREKILRTMAKGLKLSGDFDFRQLAKQTP 378 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA VANE N + GP L E+A + V Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCV 588 Query: 110 LFIDEIHRLSPVVEEVLYPA 129 +F DE+ + P ++ L A Sbjct: 589 IFFDELDAMVPRRDDSLSEA 608 >UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1KXC3_CLOBM Length = 416 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 8/115 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RPK LE++VGQ + S+ + ++ ++ + + +GPPG GKTTLANI+AN + Sbjct: 8 MRPKKLEDFVGQKHILSENKPLYNL--MKNKSICNSIFYGPPGTGKTTLANIMANYVDKK 65 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMED 132 L T+ + + ++ + + +L + VL+IDE+ + ++ L +ED Sbjct: 66 FYRLNATTASI-KDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119 >UniRef50_O34528 Uncharacterized AAA domain-containing protein yrvN n=349 Tax=cellular organisms RepID=YRVN_BACSU Length = 421 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP +E+ +GQ + ++ +I + + + L ++++GPPG+GKT++A +A + Sbjct: 8 MRPTKIEDIIGQQHLVAEDKIIGRMVQAK--HLSSMILYGPPGIGKTSIATAIAGSTSIA 65 Query: 83 LRTTSGPVLEKAG-DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 R + + K ++ A + +L +DE+HRL ++ L P +E+ + I+IG Sbjct: 66 FRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI-ILIG 123 >UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacteria RepID=A8ZU04_DESOH Length = 459 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP+ LE+ GQP V + A L L ++++GPPG GKTTLA I+A Sbjct: 19 LADR-MRPEKLEDLAGQPHVTGPDSLLRSA--LEKGTLFSMILWGPPGCGKTTLARILAG 75 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLT-------NLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 G S VL ++ ++ + +LF+DE+HR + ++ P + Sbjct: 76 MTGAAYVQISA-VLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPHV 134 Query: 131 E 131 E Sbjct: 135 E 135 >UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriobacteriaceae RepID=C8WLQ0_EGGLE Length = 446 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP+ LEE VGQ + A + D L +++FGP G GKT+LA+++A Sbjct: 23 MRPRTLEEVVGQDEAVGPGSWLRNA--IEQDQLSSVILFGPAGTGKTSLAHVIAETTKAT 80 Query: 81 -VNLRTTSGPV--LEKAGDLA-AMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 V + G V L + D A L+ +LF+DEIHR + ++ L A+ED L Sbjct: 81 FVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNRSQQDALLHAVEDRVL- 139 Query: 137 IMIG 140 +++G Sbjct: 140 VLVG 143 >UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR Length = 553 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 27/222 (12%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A+R +RP+ +++ +GQ + SQ + A +R + ++++GPPG GKT++A + Sbjct: 126 EPLAER-MRPRTIDDVIGQDLLLSQNSLLRSA--IRCSRIPSIILWGPPGTGKTSIARAI 182 Query: 76 ---ANEMG------VNLRTTSGPVLEKAG---DLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 AN G V+L + V + D VLF+DE+HR + + Sbjct: 183 VTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSKRTVLFLDEVHRFNKSQQ 242 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA-TTRAGSLT-SPLRDRFGIVQRL 181 + P +ED + + IG + P F L+ +R LT SPL+ VQ + Sbjct: 243 DSFLPVIEDGTI-VFIG-------ATTENPSFHLVTPLLSRCRVLTLSPLKPHH--VQTI 292 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIA 223 V D +S+S +G+++S+D ++ G R+A Sbjct: 293 LKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVA 334 >UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrobia RepID=B5JJN9_9BACT Length = 496 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L E VGQ + + ++ + + + LL +GPPG GKT++A +A E Sbjct: 80 LRPRSLSEVVGQEHILAPGKLLPRL--VEANTFGSLLFYGPPGCGKTSMAEAIAGETKSR 137 Query: 83 LRTTSGPVLEKAGDLAAML---TNLEPHD-VLFIDEIHRLSPVVEEVLYPAME 131 + V+ +L +L +E D VLFIDEIHR + +++L P +E Sbjct: 138 FVRINA-VMSNVAELREILGIARRMEDKDTVLFIDEIHRFNKSQQDLLLPDVE 189 >UniRef50_C4LVU1 AAA family ATPase, putative n=2 Tax=Entamoeba RepID=C4LVU1_ENTHI Length = 429 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 42/257 (16%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP+ +E+ VGQ +VR + I + G +D ++ FGPPG GKTT ++ + Sbjct: 34 RPQKIEDVVGQLKVRDDI---IHQVTVLG-RVDSMIFFGPPGCGKTTFCKLIKRHFEKSF 89 Query: 84 RTTSGPVLE-------KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 G + K G + ++FIDEIH +S V+ L +++ Sbjct: 90 IELDGNSINTNIVKDFKKGIIKKNKETTHSQTIIFIDEIHCISSTVQNFLIDLIKE---- 145 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSP----LRDRFGIVQRLEFYQVPDLQYI 192 LIG TT+ S L R +++RL V + I Sbjct: 146 ----------------KTICLIGTTTQVPSFCLSKELLLFMRVIVLERLNEVSVKE---I 186 Query: 193 VSR--SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 + R +A + +SD+ ++ + G R+A L ++ AE++ +S + Sbjct: 187 IKRAINAEYSKYIVSDEVIDKIVESSDGDGRMALNNLEKLIQCAELEKVNEVSIKFVHEV 246 Query: 251 LDM--LNVDAEGFDYMD 265 + LN D G ++ + Sbjct: 247 IGKRALNYDKRGDEHYN 263 >UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycetaceae RepID=WRIP1_YEAST Length = 587 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 36/149 (24%) Query: 23 IRPKLLEEYVGQPQVRSQ----MEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV--- 75 +RPK L +YVGQ + SQ + +IK + ++++GPPG+GKT+LA ++ Sbjct: 139 LRPKELRDYVGQQHILSQDNGTLFKYIKQG-----TIPSMILWGPPGVGKTSLARLLTKT 193 Query: 76 ----ANEMGVNLR----TTSGP---------VLEKAGDLAAMLTNLEPHDVLFIDEIHRL 118 +NE V R TS + EK+ + VLFIDEIHR Sbjct: 194 ATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKR---RTVLFIDEIHRF 250 Query: 119 SPVVEEVLYPAMEDYQLDIMIG---EGPA 144 + V +++L P +E+ + I+IG E P+ Sbjct: 251 NKVQQDLLLPHVENGDI-ILIGATTENPS 278 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 31/233 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ +E V QP + ++ I ++ L + GP G GKTT+A I+A M Sbjct: 8 RKYRPQTFDEVVAQPHITETLKNAINQERV----AHALCLSGPRGTGKTTVARILAKAMN 63 Query: 81 VNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 +GP E G A+ + DV ID + ++ + E V Y PA+ + Sbjct: 64 C----VNGPTPEPCGVCASCKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYAPALGN 119 Query: 133 YQLDI-----MIGEGPAARSIKI--DLPPFTL-IGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I M+ + +K + PP + I ATT + + + R QR +F Sbjct: 120 YKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSR---CQRYDFK 176 Query: 185 QVPDLQYIVSRSARFMGLE---MSDDGALEVARRARGTPRIANRLLRRVRDFA 234 ++ L IV A+ GLE + + VARR+ G R A LL +V ++ Sbjct: 177 RI-SLDDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYS 228 >UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusimicrobia RepID=B2KBM0_ELUMP Length = 416 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 123/289 (42%), Gaps = 59/289 (20%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE--- 78 A+ PK L+++ GQ V + + + D + + FGPPG+GKT LA +A++ Sbjct: 13 AMAPKNLDDFAGQKHVIGPGRMLRRM--IESDTIKSAVFFGPPGVGKTALARFIASKTEA 70 Query: 79 MGVNLRTTSGPVLEKAGDLAAML---------TNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 + V L + V GD+ ++ T LE ++ +DEIH + ++VL P+ Sbjct: 71 VTVELNAAAAGV----GDIKKVIEEAKERRNDTFLEKRTLVVLDEIHHFNKTQQDVLLPS 126 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 +E + DI+ LIG TT + + L RF + + + Sbjct: 127 VE--RGDII------------------LIGLTTENPYFYINNALLSRFSVFE-FKPLDAK 165 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK----HDG--T 241 DL+ I+ R + ++ D +A G R RLL V D A + DG Sbjct: 166 DLEQILKRVLKIKEAKIQKDAKDFFITQANGDAR---RLLNAV-DLAILTTAKDSDGIVN 221 Query: 242 ISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 I+ D+A + + LN D +G ++ D VI F G D AA Sbjct: 222 ITMDVAKECMQKRHLNYDKKGDEHYD------VISAFIKSMRGSDPDAA 264 >UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Tax=Bacteria RepID=C0X719_ENTFA Length = 425 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E VGQ + +I + + + L ++++GPPG GKT++A+ +A Sbjct: 9 MRPRHLDEVVGQQHLVGPGKIIRRMVEAK--MLSSMILYGPPGTGKTSIASAIAGSTNYA 66 Query: 83 LRTTSGPV-LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 R + +K + A + +L +DEIHRL ++ L P +E+ ++ IMIG Sbjct: 67 FRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI-IMIG 124 >UniRef50_B3PM47 ATPase, related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM47_MYCA5 Length = 402 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 + RP L+++V R E I R + +G PG GKTT++ I+A+ + Sbjct: 7 QKTRPIALDDFVCNDSQRFLFEKIIANDDFRS-----FIFYGKPGTGKTTISYILASSLK 61 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 V+ + + EK DL A L+ + +L IDEIHRL+ +++L P +E+ Sbjct: 62 VSFDYFNAAI-EKKEDLVA---KLKLNKILIIDEIHRLNKDKQDILLPYIEN 109 >UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria RepID=A5V4N3_SPHWW Length = 481 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 15/119 (12%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 +RP+ L + +GQ + + + A +L L+++GPPG GKTT+A ++A+ + Sbjct: 68 LRPRTLADVIGQEHLTGPEGAIGRMVAAGRL-----SSLVLWGPPGTGKTTIARLLADAV 122 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPH------DVLFIDEIHRLSPVVEEVLYPAMED 132 G+ S V DL + H +LF+DEIHR + ++ P +ED Sbjct: 123 GLRFAPVSA-VFSGVADLKKIFAEAREHARIGTRTLLFVDEIHRFNRAQQDSFLPYVED 180 >UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Amniota RepID=A6QR70_BOVIN Length = 638 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 36/197 (18%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L+++VGQ + E +++ L + L+++GPPG GKTTLA+I+AN Sbjct: 204 MRPDALQDFVGQGRAVGP-ETLLRSL-LEASEVPSLILWGPPGCGKTTLAHIIANNSKKH 261 Query: 81 ----VNLRTTSGPVLEKAGDLAAMLTN----LEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 V L TS + D+ N + +LFIDEIHR + ++ P +E Sbjct: 262 SIRFVTLSATSAKTTD-VRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPHVEC 320 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQ 190 + TLIGATT S + + L R ++ LE V + Sbjct: 321 GTI--------------------TLIGATTENPSFQVNAALLSRCRVIV-LEKLPVEAVV 359 Query: 191 YIVSRSARFMGLEMSDD 207 I+ R+ +G+++ D Sbjct: 360 TILMRAVNSLGIQVLDS 376 >UniRef50_C5NXY2 Replication-associated recombination protein A n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXY2_9BACL Length = 415 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 5/111 (4%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP +++ +GQ + ++ K + + + +++GPPG GKT++AN +ANE+ Sbjct: 8 LRPSKIDDIIGQHHLIGDGKVLTKIVESK--KMFSFILYGPPGTGKTSIANALANELDYK 65 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAME 131 + + K DL A++ + +L +DE HRL+ ++++L P +E Sbjct: 66 FKILNAVNCTKK-DLTAVIEESKRFKKVILLLDEFHRLTKPMQDILLPEIE 115 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 36/292 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK +E VGQ + ++ IK K + H +F G G GKT++A I A + Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNK-----IGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDY 133 T P + ++ + N DVL ID ++ + + E V+Y P+ Y Sbjct: 62 NCLNNTDGEPC--NSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKY 119 Query: 134 QLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I M+ G +K ++ PP I ATT L + R QR +F + Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSR---CQRFDFKR 176 Query: 186 VPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 +P + + R G+++ + G +A G+ R A LL + + E G I+ Sbjct: 177 IPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLIT 232 Query: 244 ADIAAQALDMLN--VDAEGFDYMDRKLL---LAVIDKFFGGPVGLDNLAAAI 290 + + L + N V DYM+ K + L +DK + + N ++ Sbjct: 233 YEDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSL 284 >UniRef50_A9NGG4 Holliday junction DNA helicase-like ATPase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGG4_ACHLI Length = 412 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A R +RPK +E GQ + S+ + K + +++GPPG GKTT+A + Sbjct: 2 EPLASR-MRPKNFDEVYGQDHLLSKHGVLTKM--IEKKKYLSFILYGPPGTGKTTIAKLF 58 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI-DEIHRLSPVVEEVLYPAMEDYQ 134 +++ ++ + KA L +L HDVL I DEIHR+ +++ L P +E + Sbjct: 59 SDKSMLDTYFFNASTDNKAK-LKDILDMTAYHDVLIIVDEIHRMKTDIQDYLLPFLESGK 117 Query: 135 LDIMIG 140 IMIG Sbjct: 118 A-IMIG 122 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 123/292 (42%), Gaps = 36/292 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK +E VGQ + ++ IK K + H +F G G GKT++A I A + Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNK-----IGHAYLFTGTRGTGKTSVAKIFAKAV 61 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDY 133 T P + ++ + N DVL ID ++ + + E V+Y P+ Y Sbjct: 62 NCLNNTDGEPC--NSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKY 119 Query: 134 QLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I M+ G +K ++ PP I ATT L + R QR +F + Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSR---CQRFDFKR 176 Query: 186 VPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 +P + + R G+++ + G +A G+ R A LL + + E G I+ Sbjct: 177 IPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLIT 232 Query: 244 ADIAAQALDMLN--VDAEGFDYMDRKLL---LAVIDKFFGGPVGLDNLAAAI 290 + + L + N V DYM+ K + L +DK + + N ++ Sbjct: 233 YEDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSL 284 >UniRef50_C5NYU5 ATP-dependent protease La n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYU5_9BACL Length = 765 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 42/236 (17%) Query: 12 TTLPEDVADRAIRPKLL-EEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKT 69 TL D D K+L E++ G +++ ++ F+ KLR D +L GPPG+GK+ Sbjct: 297 NTLTADEIDIKNAEKILNEDHYGLEKIKERILEFLAVKKLRDDMKSPILCLSGPPGVGKS 356 Query: 70 TLANIVANEMGVN-LRTTSGPVLEKA--------------GDLAAMLTNLEPHD-VLFID 113 +LA +A MG + +R + G V ++A G + L ++ + V+ +D Sbjct: 357 SLAKSIAASMGRSFVRISLGGVHDEAEIRGHRRTYLGALPGKIIQSLKKIKTKNPVILLD 416 Query: 114 EIHRLSPVVE--------EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG 165 EI +++ ++ EV+ PA + +D + I DL I Sbjct: 417 EIDKMASDIKGDPAAAMLEVIDPAQNNEFVDHYL-------DIPFDLSKVLFIATANNLS 469 Query: 166 SLTSPLRDRFGIVQRLEFYQVPD-----LQYIVSRSARFMGLEMSDDGALEVARRA 216 + +PLRDR +++ LE Y + + +Y++ R + GL+ G + +++A Sbjct: 470 LIPAPLRDRMEVIE-LESYTIKEKENIAAKYLIPRQTKENGLK---KGQITFSKQA 521 >UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN Length = 665 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 40/199 (20%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L++Y GQ + Q + + L + + L+++GPPG GKTTLA+I+A+ Sbjct: 231 MRPDTLQDYFGQSKAVGQDTLL--RSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKH 288 Query: 81 ----VNLRTTSGP------VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 V L T+ V+++A + + +LFIDEIHR + ++ P + Sbjct: 289 SIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKR---KTILFIDEIHRFNKSQQDTFLPHV 345 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 E + TLIGATT S + + L R ++ LE V Sbjct: 346 ECGTI--------------------TLIGATTENPSFQVNAALLSRCRVIV-LEKLPVEA 384 Query: 189 LQYIVSRSARFMGLEMSDD 207 + I+ R+ +G+ + D Sbjct: 385 MVTILMRAINSLGIHVLDS 403 >UniRef50_C1SKW4 AAA ATPase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKW4_9BACT Length = 426 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 29/178 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ ++ GQ + +F K + G D +++ GPPG GKTTLA I+ + + Sbjct: 7 LRPRAFDDIAGQKHLIGVDSVFRKMVEDGG--FDSVVLVGPPGTGKTTLAEIIGKHLNMP 64 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD---VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 + +GDL ++ + ++F+DE+HR + + +L MI Sbjct: 65 YFSLHAAT-AGSGDLKQIMESARHAGKTVLVFVDELHRFNKTQQVLLLN---------MI 114 Query: 140 GEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 G A LIGA+T +L PLR R V RLE + PDL+ + + Sbjct: 115 DSGLA-----------KLIGASTENPYHNLIQPLRSR-SFVFRLERLEKPDLKELFEK 160 >UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepID=Q47N55_THEFY Length = 441 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP+ L+E VGQ + + + + DA LL++GPPG GKTTLA +V+ Sbjct: 24 MRPRTLDEVVGQRHLLGEGSPLRRLVE--DDAPMALLLWGPPGTGKTTLATVVSRATRRR 81 Query: 81 -VNLRTTSGPV--LEKAGDLAAMLTNLEP-HDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 V L + V + D A + H +LF+DE+HR S ++ L PA+E+ + Sbjct: 82 FVELSAVTSGVKDIRDVVDEARRELGMRGVHTLLFVDEVHRFSKTQQDALLPAVENRWVS 141 Query: 137 IM 138 + Sbjct: 142 FI 143 >UniRef50_Q07844 Ribosome biogenesis ATPase RIX7 n=17 Tax=Dikarya RepID=RIX7_YEAST Length = 837 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 16/174 (9%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL---------EKAGDLAAMLTNLEPHD 108 +L+ GPPG GKT++AN +A E+ V + S P + +K DL +L P Sbjct: 242 VLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPC- 300 Query: 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 ++F DEI ++P + ME + ++ K + P +IGAT R SL Sbjct: 301 LVFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLD 360 Query: 169 SPLRDRFGIVQRLEFYQVPDLQYIVSRSA--RFMGLEMSDDGALEVARRARGTP 220 + LR R G R VP+ VSR + M + DGA++ A+ A+ TP Sbjct: 361 AALR-RAGRFDREICLNVPNE---VSRLHILKKMSDNLKIDGAIDFAKLAKLTP 410 Score = 40.4 bits (93), Expect = 0.097, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPH--DV 109 +L++GPPG GKT LA VANE N + GP L E + + T V Sbjct: 570 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCV 629 Query: 110 LFIDEIHRLSP 120 +F DE+ L P Sbjct: 630 IFFDELDALVP 640 >UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacteria RepID=C5RHF7_CLOCL Length = 424 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 7/119 (5%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA- 76 +ADR +RP+++EE VGQ + Q +I K + + +++ +GPPG GKTT+ANI+A Sbjct: 4 LADR-LRPQVIEEVVGQSHLIGQNKILTKI--IESQHIPNMIFYGPPGCGKTTVANIIAK 60 Query: 77 --NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDV-LFIDEIHRLSPVVEEVLYPAMED 132 N+ L T+ + + + T + V L++DEI + ++ L +E+ Sbjct: 61 ATNKRFFKLNATNASTKDIKEIILELDTFMGAKGVLLYLDEIQNFNKKQQQSLLEFIEN 119 >UniRef50_C4XEG6 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEG6_MYCFE Length = 235 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 104/215 (48%), Gaps = 9/215 (4%) Query: 25 PKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLR 84 P +E+ GQ + + I ++ +K + +++ P G GK +LANI++ +L+ Sbjct: 6 PINFKEFRGQKDLIKSLIILLQESK----KIPNMIFVAPKGYGKYSLANIISQFKDRSLQ 61 Query: 85 -TTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 TS ++++ +L +L NL+ + +LFI++I++L P ++++L+ LD + E Sbjct: 62 PITSNNIVDEF-ELLNILANLKNNAILFIEDINKLKPELKKLLFDIYNSINLDKV--EKI 118 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 + + + F++IG + + S + F I L+ Y + +L I++ + + Sbjct: 119 CYSNKRFKIKNFSIIGTINSSNQIDSSKWEGFKIFN-LKKYSLNNLNQIINYNRLKTNFK 177 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 + + + P I N + + D+ +K+ Sbjct: 178 LGNSLVEYILNNCNNNPGILNEVYLKAIDYFAIKN 212 >UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI0_RHOVA Length = 455 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L + +GQ + + + A G+A ++ +GPPG GKTT+A ++A G + Sbjct: 37 LRPASLGDVIGQEHLLGEGGPLRRIAD--GEAPRSMIFWGPPGTGKTTVARLMAKGAGAH 94 Query: 83 LRTTSGPV-----LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 S L K D A +LF+DEIHR + ++ P +ED + I Sbjct: 95 FEQISAIFSGVADLRKVFDAAKDRQRFGQGTILFVDEIHRFNRSQQDSFLPFVEDGTI-I 153 Query: 138 MIGEGPAARSIKIDLPPFTLIGA 160 +IG + P F L GA Sbjct: 154 LIG-------ATTENPSFELNGA 169 >UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPI4_BDEBA Length = 449 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 89/215 (41%), Gaps = 56/215 (26%) Query: 23 IRPKLLEEYVGQ-----PQVR-SQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA---- 72 +RPK L++ GQ PQ + QM LR L L+I+GPPG GKTT A Sbjct: 32 LRPKTLDDIFGQQKTLGPQSKLGQM--------LRKGYLPSLIIWGPPGTGKTTFALALS 83 Query: 73 -NIVANEMGVNLRTTSGPVLEKAGDLAA-MLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 + A+ + +N + L + G+ + +LF+DEIHR + ++VL P + Sbjct: 84 QHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQKTILFVDEIHRFNKAQQDVLLPFV 143 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS------LTSPLR----------DR 174 E K DL L+GATT S L S R D Sbjct: 144 E-----------------KGDL---VLVGATTENPSYELNRALLSRCRVVIFERLSEDDL 183 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGA 209 IV+R E + L I++ A LE SD A Sbjct: 184 NKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDA 218 >UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase interacting protein isoform 1 n=2 Tax=Apocrita RepID=UPI0000DB7733 Length = 433 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 34/167 (20%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI---VANEM 79 +RP +Y+GQ +V I + L + ++ +GPPG GKT+L NI ++ EM Sbjct: 19 MRPACFHDYIGQEKVVGSNTILQQL--LTKGHIPSMIFWGPPGCGKTSLTNIISKISKEM 76 Query: 80 G------VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI-DEIHRLSPVVEEVLYPAMED 132 +NL TS V + T + + ++ I D+IHR + + +++ P +E Sbjct: 77 HGEKVNIINLSATSSGVSNIKNIINKTKTESKFNQIIVIMDKIHRFNKLQQDIFLPHVET 136 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGI 177 FTLIG TT + SL S L R I Sbjct: 137 --------------------GTFTLIGTTTENPSYSLNSALLSRCRI 163 >UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacteria RepID=C8R0G7_9DELT Length = 461 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 33/183 (18%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L+++VGQ + + ++ A R L LL++GPPG GKTTLA I+A G + Sbjct: 26 MRPARLDDFVGQRHLLADDKLL--AGLSRHGYLPSLLLWGPPGSGKTTLARILAGGSGAD 83 Query: 83 LRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 S VL ++ ++ VLF+DEIHR + ++ P +E + Sbjct: 84 FVFFSA-VLSGVKEIREIVERSRRIRAESGRGSVLFVDEIHRFNKSQQDAFLPHVEAGLI 142 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIV 193 TLIGATT S + +PL R ++ L DLQ I+ Sbjct: 143 --------------------TLIGATTENPSFHVIAPLLSRCRVIV-LNPLAAEDLQIIL 181 Query: 194 SRS 196 R+ Sbjct: 182 ERA 184 >UniRef50_UPI00015B415D PREDICTED: similar to werner helicase interacting protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B415D Length = 522 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 36/197 (18%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP + YVGQ V + + L + +++++GPPG GKT+LAN++AN Sbjct: 115 MRPNSIMSYVGQKHVLGPETMLYQL--LSKTEIPNIILWGPPGCGKTSLANVIANTCQHC 172 Query: 81 -------VNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 V L + ++ A +A+ V+F+DEIHR + ++ P +E Sbjct: 173 PGGKYRYVKLSAAMSGISDVKDAITIASNELKFGRRTVMFMDEIHRFNKTQQDTFLPHIE 232 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTR--AGSLTSPLRDRFGIVQRLEFYQVPDL 189 + LIGATT + SL + L R ++ LE + +L Sbjct: 233 SGTI--------------------ILIGATTENPSFSLNAALLSRCRVIV-LEKLTIENL 271 Query: 190 QYIVSRSARFMGLEMSD 206 I+ R+ + G + D Sbjct: 272 TEILIRAIKAAGGAVHD 288 >UniRef50_B7PTW3 Werner helicase interacting protein, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PTW3_IXOSC Length = 400 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 18/116 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP LE +VGQ + + K + +++ ++++GPPG GKTTLA+I++ + Sbjct: 6 MRPSQLEAFVGQDGTLGEKSMLRKL--IASNSVPSMILWGPPGCGKTTLAHIISQKCKES 63 Query: 81 -----VNLRTTSGPV------LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125 V L TS V LE+A + M + VLFIDEIHR + + + V Sbjct: 64 SEAHFVTLSATSSGVKDVKDTLERARNDQRM---FKRKTVLFIDEIHRFNKLQQLV 116 >UniRef50_B2GIA8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B2GIA8_KOCRD Length = 556 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 +RP+ L+E VGQ + S + + + A ++++GPPG GKTT+A ++A Sbjct: 41 MRPRTLDEVVGQKHLLRPGSPLRALVNGSSGPA-APSSVILWGPPGTGKTTIAQVIARGH 99 Query: 80 G---VNLRTTSGPVLEKAGDLAAMLTNLEPHD---VLFIDEIHRLSPVVEEVLYPAMED 132 G V L + V + + LT + H VLF+DEIHR + ++ L P +E+ Sbjct: 100 GTTFVELSALTAGVKDVRRVMDEALTARDLHGRTTVLFLDEIHRFTKAQQDALLPGVEN 158 >UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacteria RepID=C4KSW2_BURPS Length = 436 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 20/122 (16%) Query: 22 AIRPKLLEEYVGQPQVRSQ---MEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 A+RPK L + +GQ + + + + ++ K ++++GPPG+GKTTLA + A Sbjct: 16 ALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHS-----MILWGPPGVGKTTLARLTALA 70 Query: 79 MGVNLRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 S +E+A D L H +LF+DEIHR + ++ L P Sbjct: 71 FDCEFIALSAVLGGVKDIREAMEQARD---TLNRTGRHTILFVDEIHRFNKAQQDALLPF 127 Query: 130 ME 131 +E Sbjct: 128 VE 129 >UniRef50_C1GPB8 Ribosome biogenesis ATPase RIX7 n=2 Tax=Paracoccidioides brasiliensis RepID=C1GPB8_PARBA Length = 746 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 107/273 (39%), Gaps = 75/273 (27%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 LE+ + P R Q+ K RG +L+ GPPG GKT +AN A E+GV S Sbjct: 219 LEDLIVLPMTRPQVFSSSKVQPPRG-----VLLHGPPGCGKTMIANAFAAELGVPFIAIS 273 Query: 88 GPVL----------------EKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV------ 125 P + E+A +A L +FIDEI ++P E Sbjct: 274 APSIVSGMSGESEKALREHFEEAKKVAPCL--------VFIDEIDAITPKRESAQREMEK 325 Query: 126 -----LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLR----DRFG 176 L M+D L+ K D P ++ AT R SL + LR D Sbjct: 326 RIVAQLLTCMDDLALE------------KTDGKPVIVLAATNRPDSLDAALRRDDLDFKL 373 Query: 177 IVQRLEFYQVPDLQYIVSRSA-----RFM-------GLEMSDDGALEVARRARGTPRIAN 224 + +R + DL +VS + R++ G EM +G V + +P+I Sbjct: 374 LAKRTPGFVGADLNDLVSTAGSAAIKRYIELLKSHTGDEMEIEGTARVDDDNKISPKI-- 431 Query: 225 RLLRRVRDFAEVKHDGTISADIAAQALDMLNVD 257 R LRR+ +KH D +Q + + N D Sbjct: 432 RELRRL-----IKHARETPLDSESQTISVSNAD 459 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 22/164 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA VANE N + GP L E+A + V Sbjct: 522 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRARSSVPCV 581 Query: 110 LFIDEIHRLSPVVEEVLYPA---MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS 166 +F DE+ L P ++ L A + + L + G G A + I + I AT R Sbjct: 582 IFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQGIYV-------IAATNRP-D 633 Query: 167 LTSPLRDRFGIVQRLEFYQVPDLQ---YIVSRSARFMGLEMSDD 207 + P R G ++ L F +P I+ R + +E SD+ Sbjct: 634 IIDPAMLRPGRLETLLFVNLPSADERVEILQTLVRNLPIEFSDE 677 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 32/250 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVA 76 V R RP+ EE +GQ + + I K+ H +F G G+GKT+LA I+A Sbjct: 7 VIARKYRPQTFEEVIGQEHITKTISKSIAQKKIA-----HAYLFSGAHGVGKTSLARIIA 61 Query: 77 NEMGVNLRTTSGPVLEKAGDL--AAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYP 128 L +GP + G + N P DV+ ID I + ++E V + P Sbjct: 62 KA----LNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISP 117 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + E A ++ PP I ATT A + +R R Q+ Sbjct: 118 VAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSR---CQQ 174 Query: 181 LEFYQ--VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 F + DL+ I+ ++ ++ +A++ARG+ R + +L ++ + K Sbjct: 175 YTFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKK 234 Query: 239 DGTISADIAA 248 T SAD+ A Sbjct: 235 YIT-SADVNA 243 >UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB Length = 456 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L+E VGQ ++ + +A + + ++++GPPG GKTTLA ++A+ Sbjct: 29 MRPRTLDEMVGQKRLLAADSALRRA--VESGRVHSMILWGPPGCGKTTLALLLAHYADAE 86 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP------HDVLFIDEIHRLSPVVEEVLYPAME 131 + S VL D+ +L VLF+DE+HR + ++ P +E Sbjct: 87 FKAISA-VLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIE 140 >UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusobacteriaceae RepID=C7NB61_LEPBD Length = 409 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 9/123 (7%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN- 82 RPK L+++ GQ ++ + I K + RG+ ++ + +G PG GKTTLA I++N+M + Sbjct: 19 RPKSLDDFYGQKRLVGENGILRKIIE-RGNFMNAIF-WGAPGTGKTTLAEIISNKMNYHY 76 Query: 83 -----LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 ++ + + E + A +LF+DEIHR + + ++ L +E+ + I Sbjct: 77 EYLNAIKASVADIKEISEKAANRFHMNGQQTLLFLDEIHRFNKLQQDSLLQDLENGNI-I 135 Query: 138 MIG 140 +IG Sbjct: 136 LIG 138 >UniRef50_B7ZX89 Putative uncharacterized protein n=2 Tax=Zea mays RepID=B7ZX89_MAIZE Length = 476 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 40/237 (16%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLE---------PHD 108 LL+ GPPG GKTTLA+ +ANE GV S P + +G A N+ Sbjct: 226 LLLHGPPGCGKTTLAHAIANETGVPFYKISAPEV-VSGVSGASEENIRGLFQKAYRTAPS 284 Query: 109 VLFIDEIHRLSPVVEEV-----------LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTL 157 ++FIDEI ++ E + L M+ + +I G P + + Sbjct: 285 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDQFHQNIGSGSSNLEAESSEKKPGYVI 344 Query: 158 -IGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRA 216 IGAT R ++ LR R G R VPD + + + + + +G ++ + A Sbjct: 345 VIGATNRPDAVDQALR-RPGRFDREISLGVPD-ENARKQILKMLTQHLRLEGEFDLFKIA 402 Query: 217 RGTP------------RIANRLLRRV----RDFAEVKHDGTISADIAAQALDMLNVD 257 R TP + N ++R+ R ++ DG+ D Q D VD Sbjct: 403 RATPGFVGADLKALVDKAGNLAMKRIIDERRARCCIEQDGSSKHDWWRQPWDESEVD 459 >UniRef50_C2GHX2 Crossover junction endodeoxyribonuclease n=4 Tax=Actinomycetales RepID=C2GHX2_9CORY Length = 574 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP+ L+E VGQ + + + + + GD ++++GPPG GKTT+A++++ G Sbjct: 33 MRPRSLDEVVGQQHLLAPGKPLRRL--IEGDGEASVILYGPPGTGKTTIASLISVATGNR 90 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNL--EPHDVLFIDEIHRLSPVVEEVLYPAMED 132 V L V E + L VLFIDE+HR S ++ L A+E+ Sbjct: 91 FVGLSALDSGVKEVRAVIDTARKKLIEGTRTVLFIDEVHRFSKTQQDALLAAVEN 145 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 23/225 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPKL E VGQ V++ +F+ + L+ + H IF GP G GKTT+A I+A + Sbjct: 6 RKYRPKLFSEVVGQNHVKT---LFLNS--LKNGEISHAYIFAGPRGTGKTTVARILAKSL 60 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAME-DY 133 + P + + N DVL ID I + + E V Y A + +Y Sbjct: 61 NCENKNGVEPC--NKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNY 118 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + E A ++ PP I ATT + + R ++ + Sbjct: 119 KVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVID-FKNLT 177 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 + D+ + + + +S + E+A+RA G R A +L +V Sbjct: 178 IEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQV 222 >UniRef50_D0MTY0 Ribosome biogenesis ATPase RIX7 n=2 Tax=Phytophthora infestans T30-4 RepID=D0MTY0_PHYIN Length = 800 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 11/171 (6%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP--VLEKAGDLAAMLTNL------EPHDV 109 +L+ GPPG GK+ LA+ +A E G S P V +G+ L L + Sbjct: 188 VLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISRAPSI 247 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS 169 +FIDEI ++P E ME + ++ + P LIGAT R +L S Sbjct: 248 IFIDEIDAITP-KRETSARGMEKRIVAQLLTSTDSLSLENTGGKPVILIGATNRPDALDS 306 Query: 170 PLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTP 220 LR R G R +PD + + R + +M+ +G + A AR TP Sbjct: 307 ALR-RAGRFDREICLGIPD-EEAREKILRVLARKMTLEGEFDFAALARRTP 355 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA +A+E G N + GP L E++ V Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFISIKGPELLDKYVGESERSVRQVFQRARASSPCV 575 Query: 110 LFIDEIHRLSP 120 +F DE+ L+P Sbjct: 576 VFFDELDALAP 586 >UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms RepID=B6HVW8_PENCW Length = 539 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 18/138 (13%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRG----DALDHLLIFGPPGLGKTTLANIVANE 78 +RPK LEE GQ E+ LRG D + ++++G G GKTT+A ++A+ Sbjct: 128 MRPKTLEEVCGQ-------ELVGPNGILRGLIEQDRVPSMILWGSAGTGKTTIARVIASL 180 Query: 79 MG---VNLRTTSGPVLEKAGDLAAMLTNL---EPHDVLFIDEIHRLSPVVEEVLYPAMED 132 +G V + +TS V E A + L ++F DEIHR S ++V +E Sbjct: 181 VGSRFVEINSTSSGVAECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVES 240 Query: 133 YQLDIMIGEGPAARSIKI 150 Q+ +IG S K+ Sbjct: 241 GQV-TLIGATTENPSFKV 257 >UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv2559c/MT2636 n=53 Tax=Bacteria RepID=Y2559_MYCTU Length = 452 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 29/155 (18%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLR----GDALDHLLIFGPPGLGKTTLANIVANE 78 +RP L+E VGQ + + LR G + ++++GPPG GKTTLA +++ Sbjct: 35 MRPASLDEVVGQDH------LLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEP------HDVLFIDEIHRLSPVVEEVLYPAMED 132 G S + ++ A++ N VLFIDE+HR S ++ L A+E Sbjct: 89 TGRRFEALSA-LSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVE- 146 Query: 133 YQLDIMIG---EGPA--------ARSIKIDLPPFT 156 +++ +++ E P+ +RS+ + L P T Sbjct: 147 HRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLT 181 >UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosaccharomyces pombe RepID=WRIP1_SCHPO Length = 504 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 15/157 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA- 76 +A+RA RPK L+EYVGQ ++ + I + D + ++++G G GKTTLA ++A Sbjct: 86 LAERA-RPKSLDEYVGQEELVGERGIIRNL--IEQDRCNSMILWGSAGTGKTTLARLIAV 142 Query: 77 --NEMGVNLRTTSGPVLEKAG---DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + + TS V + D LT ++F+DE+HR + +++ P +E Sbjct: 143 TTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVE 202 Query: 132 DYQLDIMIG---EGPAAR--SIKIDLPPFTLIGATTR 163 L +IG E P+ R S I P ++ TR Sbjct: 203 K-GLVTLIGATTENPSFRLNSALISRCPVFVLKKLTR 238 >UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F86 Length = 422 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK +E+ +GQ + ++ + + L ++++GPPG+GKT++A +A Sbjct: 10 MRPKKIEDIIGQSHLVGDGKLLRRMVDV--GQLSSMILYGPPGVGKTSIATAIAGSTDTP 67 Query: 83 LRTTSGPVLEKAG-DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 + + V K ++A + ++ +DE+HRL ++ L P +E L I+IG Sbjct: 68 FKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVHRLDKAKQDFLLPHLEK-GLIILIG 125 >UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacteria RepID=B1ZVQ2_OPITP Length = 448 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L E VGQ + + + + + L+ +GPPG GKT++A +A E Sbjct: 33 MRPRRLAEVVGQSHILKPGSLLPRL--VAQNRFGSLIFYGPPGCGKTSIAEAIAQETNSR 90 Query: 83 LRTTSGPVLEKAGDLAAMLTNL----EPHDVLFIDEIHRLSPVVEEVLYPAMED 132 + V+ +L +L + + +LFIDE+HR + +++L P +E+ Sbjct: 91 FVRVNA-VMSNVAELREILHSARRLPQASTILFIDELHRFNKSQQDLLLPDVEE 143 >UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, putative n=2 Tax=Treponema RepID=Q73K31_TREDE Length = 612 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 35/254 (13%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEMGVN 82 RP+ E+ +GQ V + ++ I+A K+ H +F GP G GKT+ A I+A Sbjct: 11 RPQRFEDLLGQEFVAATLQKSIEAGKIA-----HAYLFSGPRGCGKTSSARILAK----V 61 Query: 83 LRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVEEVLYPAMED-YQ 134 L GP G + +T DV+ ID ++ + + +E+L+P + Y+ Sbjct: 62 LNCAEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEILFPPNSNRYK 121 Query: 135 LDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF--Y 184 + I M+ +K I+ PP I ATT + + ++ R Q+ F Sbjct: 122 IYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSR---CQQFNFKLV 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + L+ ++ +A +G+ D+ +AR A G+ R A L +V F+ DG I+ Sbjct: 179 SIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFS----DGHITF 234 Query: 245 DIAAQALDMLNVDA 258 + + L + VD+ Sbjct: 235 EKIHEKLGLTGVDS 248 >UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K1T7_SCHJY Length = 514 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 14/118 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L++YVGQ + + I + D ++++G G+GKTTLA I+A G + Sbjct: 93 VRPKTLDDYVGQESLVGKGGIIRNL--IERDECPSMILWGNSGVGKTTLARIIAKTTGAH 150 Query: 83 LRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 S + E++ +L + ++F+DE+HR + +++ P +E Sbjct: 151 FLEVSATSASVSDCRKIFEESQNLLRLTGK---KTIVFLDEVHRFNRAQQDIFLPMVE 205 >UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Thermotogaceae RepID=A6LJD0_THEM4 Length = 410 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 13/125 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE---- 78 +RPK EE++GQ + + + I+ A G+ L + +GPPG GKT+ I+ + Sbjct: 8 LRPKGFEEFIGQEHLFGEKGL-IRLAIESGN-LFSAVFYGPPGCGKTSTLEIIRKKTDFE 65 Query: 79 -MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME--DYQL 135 N TS ++K D A + L+ ++F+DEIHR + +++ P +E DY Sbjct: 66 IYHFNAAVTSTIDVKKVLDYAQKVKGLKKM-LIFVDEIHRFNKKQQDIFLPGIERGDY-- 122 Query: 136 DIMIG 140 I IG Sbjct: 123 -IFIG 126 >UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ98_ALIAD Length = 447 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 8/115 (6%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE---- 78 +RP+ L+E VG + + I + + D L ++++GPPG GKTT+A ++A + Sbjct: 22 MRPRSLDEMVGHENLVGRDGILRR--MIERDRLMSIILYGPPGTGKTTIAEVIARQTKAR 79 Query: 79 -MGVNLRTTSGPVLEKAGDLAAMLTNLEP-HDVLFIDEIHRLSPVVEEVLYPAME 131 + +N T+ + KA + A +L V+F+DEIHR + ++ L P +E Sbjct: 80 FIPLNAVTSGIADVRKAVETAREERDLYARRTVVFLDEIHRFNKSQQDALLPHVE 134 >UniRef50_C4Y1S6 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y1S6_CLAL4 Length = 768 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+++ GQ ++ I + + +++G PG+GKT+LA I+A+ Sbjct: 228 LRPKTLDDFFGQEKLVGPNGILRNI--MASQQIPSFILWGVPGVGKTSLARIIASNSNHR 285 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD-------VLFIDEIHRLSPVVEEVLYPAME 131 SG A L +N + +LF+DEIHR + V+++L P +E Sbjct: 286 YVELSGSE-SSAKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVIE 340 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 48/263 (18%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVA 76 V R RP+ EE VGQP V ++ I++++ + H +F G G+GKT++A I+A Sbjct: 5 VIARKWRPQTFEEVVGQPHVTRTLQNAIRSSR-----IAHSYLFTGARGVGKTSIARILA 59 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH---DVLFID-----EIHRLSPVVEEVLY- 127 + T P ++ + T + DVL ID I + + E V Y Sbjct: 60 KALNCETGVTPTPC-----NVCSNCTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYR 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ I + E A ++ PP I ATT + + + R Q Sbjct: 115 PAKSRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSR---CQ 171 Query: 180 RLEFYQVPD------LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 R +F ++P L++I ++ + +S+ +AR A G+ R A LL ++ F Sbjct: 172 RFDFRRIPSHMLVDHLRHIAAQE----DVALSEGVLYAIAREADGSMRDAQSLLEQMLSF 227 Query: 234 AEVKHDGTISADIAAQALDMLNV 256 + DG ++ LD+L V Sbjct: 228 S---RDGLSDEEV----LDVLGV 243 >UniRef50_A9F8L0 ATP-dependent protease La n=3 Tax=Proteobacteria RepID=A9F8L0_SORC5 Length = 799 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 34/200 (17%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEMG 80 A++ KL EE+ G V+ ++ + KL G A +L F GPPG+GKT+L +A+ G Sbjct: 315 AVKAKLDEEHRGLDDVKRRILEHMAVLKLTGKARATILCFAGPPGVGKTSLGQSIADATG 374 Query: 81 VN-LRTTSGPVLEKA--------------GDLAAMLTNLEPHD-VLFIDEIHRL------ 118 +R + G V ++A G + L + + ++ +DE+ +L Sbjct: 375 RPFVRISLGGVHDEAELRGHRRTYVGALPGRIVHALKKAKVKNPIVLLDEVDKLGAGWRG 434 Query: 119 SP--VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFG 176 SP + EVL P +D + + DL + G+L++PLRDR Sbjct: 435 SPEAALLEVLDPEQNRTFVDHYL-------ELPFDLSEVVFLCTVNDLGALSAPLRDRLE 487 Query: 177 IVQRLEFYQVPDLQYIVSRS 196 +++ L Y PD + ++RS Sbjct: 488 VIE-LSGY-TPDEKIAIARS 505 >UniRef50_Q8ZW03 MoxR related protein n=1 Tax=Pyrobaculum aerophilum RepID=Q8ZW03_PYRAE Length = 301 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 18/113 (15%) Query: 38 RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDL 97 R +E+ + A RG H+L PPGLGKTTLA I+A +G+N R D+ Sbjct: 16 RETLELLLSAIIARG----HVLFNDPPGLGKTTLAKILAKALGLNFRRIQFTPDMLPSDV 71 Query: 98 AAMLTNLEPH-------------DVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + PH ++L DEI+R P + L AME+ Q+ + Sbjct: 72 IGV-NVWRPHEGRFEFIRGPVFTNILLADEINRAPPKTQAALLEAMEERQVTV 123 >UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Y2_THELT Length = 465 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 28/250 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK ++ + Q Q + + ++ A L+ + + H IF GP G GKT++A I+A + Sbjct: 6 RKYRPKNFDQIIDQLQAK----LVLQNALLK-NKISHAYIFSGPRGTGKTSVARILAKAL 60 Query: 80 GVNLRTTSGPVLEKAGDLAA------MLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 + R P E L+ + L+ IDEI ++ V P + + Sbjct: 61 NCSNRKGYEPCCECESCLSIDRGTHPDVIELDAASNRGIDEIRKIRDAVG--FKPMLSSH 118 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + E A ++ PP + ATT + + R +++ F + Sbjct: 119 KIYIIDEFHMLTREAFNALLKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIEFRNFSE 178 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG-TISA 244 L+ I + A F +E+ +D A +ARRA G R A L ++ ++A DG I+ Sbjct: 179 DAILENI-RKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANYA----DGQVITP 233 Query: 245 DIAAQALDML 254 + +AL ++ Sbjct: 234 QVVEKALGLV 243 >UniRef50_C4M7P3 ATPase, AAA family protein n=2 Tax=Entamoeba RepID=C4M7P3_ENTHI Length = 622 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 102/260 (39%), Gaps = 61/260 (23%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL---------EKAGDLAAMLTNLEPHD 108 +L+ GPPG GKT LA +A E+GV S L K DL + + P Sbjct: 78 ILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQLASQRAPA- 136 Query: 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 +LFIDEI ++P + A + + I+ + + P +IGAT R SL Sbjct: 137 LLFIDEIDAITPKRDN----AQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSLD 192 Query: 169 SPLRDRFGIVQRLEFYQVPDLQYIVSRSAR-----FMGLEMSDDGALEVARRARGTPRIA 223 LR R G R +P S S R M + + D A+ + + A+GT Sbjct: 193 PALR-RAGRFDREIALGIP------SESQRRQILDKMMVNLKIDSAVNIEKLAKGTA--- 242 Query: 224 NRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL 283 G + ADI A + ++ +A I + F G G Sbjct: 243 ----------------GYVGADIVA---------------LTKEAAIAAIHRIFSGKAGA 271 Query: 284 DNLAAAIGE-ERETIEDVLE 302 DNL + + E E +D+ E Sbjct: 272 DNLKSIQQDVEEENQKDLTE 291 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT A +ANE N GP L E+A M V Sbjct: 383 ILLYGPPGCGKTYCAKALANECKANFIAVKGPQLLNKYVGEAERAVRQLFMRARNSAPCV 442 Query: 110 LFIDEIHRLSP 120 +F DE+ L+P Sbjct: 443 IFFDELDALAP 453 >UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacteroidetes RepID=C0BGA7_9BACT Length = 425 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 14/123 (11%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +A+R +RPK L EY GQ + + + L+ +GPPG GKTTLA ++A Sbjct: 5 LAER-MRPKSLGEYFGQDHLVGPKGSLTQM--ISNGVFPSLIFWGPPGTGKTTLAQLLAL 61 Query: 78 EMGVNLRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYP 128 E S ++ KA + + P +LFIDEIHR S ++ L Sbjct: 62 EKERPFYQLSAINAGVKEIREIISKAEHSGGLFSGKSP--ILFIDEIHRFSKSQQDSLLN 119 Query: 129 AME 131 A+E Sbjct: 120 AVE 122 >UniRef50_B6K3Z7 Cell division cycle protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3Z7_SCHJY Length = 745 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 122/295 (41%), Gaps = 64/295 (21%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPHD--V 109 +L++GPPG GKT +A VANE G +GP + E +L E + + Sbjct: 254 ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 313 Query: 110 LFIDEIHRLSPV-------VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATT 162 +FIDEI ++P VE + + + + +G ARS ++ AT Sbjct: 314 IFIDEIDSIAPKRDKTNGEVERRVVSQL------LTLMDGMKARS------NIVVMAATN 361 Query: 163 RAGSLTSPLRDRFGIVQRLEFYQVPD----LQYIVSRSARFMGLEMSDDGALE-VARRAR 217 R S+ LR RFG R +PD L+ + + ++++DD LE +A Sbjct: 362 RPNSIDPALR-RFGRFDREVDVGIPDPTGRLEILRIHTK---NMKLADDVDLEQIAAETH 417 Query: 218 G---------TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY----- 263 G A + +R D ++ D +I A+ LD L V E F + Sbjct: 418 GYVGSDLASLCSEAAMQQIREKMDLIDLDED-----EIDAEVLDSLGVTMENFRFALGQS 472 Query: 264 ---MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 R+ ++ V D + GL+N+ +RE E V P + + FL+ P Sbjct: 473 NPSALRETVVEVPDIRWEDIGGLENV------KRELRETVQMPVMHAEKFLRFAP 521 >UniRef50_B9QC65 Peroxisomal-type ATPase, putative n=3 Tax=Toxoplasma gondii RepID=B9QC65_TOXGO Length = 719 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Query: 2 IEADRLISAGTTLP----EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDH 57 ++A R + TT+P +DV + + +Y+ P R ++ K RG Sbjct: 419 VKAFRSDTVDTTVPTVHWQDVGGIETAKQEIRDYISLPLERPEL---FDGLKTRGG---- 471 Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L+FGPPG GKT LA VA E GVN + GP L EK + V Sbjct: 472 ILLFGPPGTGKTLLAKAVATECGVNFISVKGPELLNMYIGESEKNVRMVFQKARACKPSV 531 Query: 110 LFIDEIHRLSP 120 LF DE+ L P Sbjct: 532 LFFDELDALLP 542 >UniRef50_A2SSI7 AAA family ATPase, CDC48 subfamily n=8 Tax=Euryarchaeota RepID=A2SSI7_METLZ Length = 810 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 13/124 (10%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 SAG ED+ L+ E + P E+F KL + +L++GPPG GK Sbjct: 196 SAGNIHYEDIGGLGRELSLVREMIEYPL--RHPEVF---EKLGIEPPKGVLLYGPPGTGK 250 Query: 69 TTLANIVANEMGVNLRTTSGP--VLEKAGD----LAAMLTNLEPH--DVLFIDEIHRLSP 120 T +A VANE G T SGP + + GD L + E + ++FIDEI ++P Sbjct: 251 TLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFEKAEENAPSIIFIDEIDSIAP 310 Query: 121 VVEE 124 EE Sbjct: 311 KREE 314 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 L+FGPPG GKT LA VANE N + GP L EK L + Sbjct: 512 FLMFGPPGTGKTLLAKAVANESECNFISVKGPELMSKWVGESEKGIREIFRKARLASPSI 571 Query: 110 LFIDEIHRLSP 120 +F DEI + P Sbjct: 572 IFFDEIDSIVP 582 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 28/227 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP +E VGQ + + K A ++ L GP G GKT++A I A + Sbjct: 8 RKYRPSNFDEVVGQTHIIQTL----KNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAKTLN 63 Query: 81 V-NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAME-DY 133 N + V E M N D++ ID + + ++++V Y M+ Y Sbjct: 64 CTNSQDAPCGVCENC----KMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKY 119 Query: 134 QLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I M+ G +K I+ PP I ATT + + R QR +F + Sbjct: 120 KIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISR---CQRFDFNK 176 Query: 186 VP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 V D++Y +S + G+E+ DG +A+ A G R A +L + Sbjct: 177 VSVNDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQC 223 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 127/307 (41%), Gaps = 56/307 (18%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK + VGQ ++ ++ A KL+ ++H IF GP G GKTT A I+A + Sbjct: 6 RKYRPKNFYDIVGQEHIK---KLLTNALKLQ--KINHAYIFAGPRGTGKTTTARILAKSL 60 Query: 80 GVNLRTTSGPVLE----KAGDLAAML--TNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 P E +A D + L L+ IDEI ++ V P M Y Sbjct: 61 NCEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVN--FTPVMGKY 118 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + E A ++ PP I ATT + + R + LEF Sbjct: 119 KVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHV---LEFRN 175 Query: 186 VPDLQYIVSRSARFM---GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + + + I+S+ G +++ + ++A+RA G R A L +V + G + Sbjct: 176 ISE-ENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYT----GGEV 230 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + I +AL +++ + I+KF + A + +RE IE +L Sbjct: 231 TEKIVDEALGLISEET--------------IEKF---------IEATLNNDRELIEKILN 267 Query: 303 PYLIQQG 309 I++G Sbjct: 268 DIYIERG 274 >UniRef50_Q210S4 Vesicle-fusing ATPase n=3 Tax=Proteobacteria RepID=Q210S4_RHOPB Length = 647 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 8/87 (9%) Query: 48 AKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGP--VLEKAGDLAAMLTNL- 104 A+L +A +L++GPPG GKT +A VA E GV +GP + + G+ ML + Sbjct: 136 ARLGVEAPKGVLLYGPPGCGKTLIARTVACEAGVYFLHVNGPEIIQKHYGESEEMLRRIF 195 Query: 105 -----EPHDVLFIDEIHRLSPVVEEVL 126 +P ++F DEI ++P E VL Sbjct: 196 ADARKQPAAIIFFDEIDAIAPNRETVL 222 >UniRef50_Q04QW6 Holliday junction resolvase helicase subunit-like ATPase n=4 Tax=Leptospira RepID=Q04QW6_LEPBJ Length = 423 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP EE +GQ + Q+ + + +++GPPG GK+TLA I+ + + Sbjct: 17 IRPSGFEEVIGQTRATKQLVNYRSPVSI--------ILYGPPGTGKSTLAGILCRKWNLP 68 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 + V ++ +L E +LF+DEIHR S ++ L +E L ++IG Sbjct: 69 FVEYNA-VSTGVSEIKKLLERAEREGTILLFLDEIHRFSASQQDSLLKGVETGHL-VLIG 126 Query: 141 ---EGPAAR 146 E PA R Sbjct: 127 ATTENPAFR 135 >UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHI5_9BACT Length = 430 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 12/118 (10%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ ++ GQ + ++ + ++ + D ++ GPPG GKT+LA+I++ + Sbjct: 16 LRPEGFGDFFGQGHLTAEGSLLRRS--IENDCFSSIIFTGPPGTGKTSLASIISKHTEAD 73 Query: 83 ---LRTTSGPVLE-----KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 L V E KA D A + + VLF+DEIHR + ++ L +E+ Sbjct: 74 FIALSAIDSSVSEVRKAVKAADEARKFSGRKT--VLFVDEIHRFNKAQQDSLLKDIEN 129 >UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacteria RepID=D2AWQ0_STRRD Length = 436 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA--- 76 +RP+ L+E +GQ + + + ++A +A L ++GPPG GKTTLA +VA Sbjct: 23 MRPRGLDEVIGQRHLLGPGTPLRRLVEA-----EAPMSLFLWGPPGTGKTTLAYVVAGVT 77 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNL---EPHDVLFIDEIHRLSPVVEEVLYPAMED 132 V + S V E + L VLF+DE+HR + ++ L PA+E+ Sbjct: 78 KRRFVEVSAVSAGVKEVRAAIEQARRELGMSGRQTVLFVDEVHRFNKAQQDALLPAVEN 136 >UniRef50_A6URF6 AAA family ATPase, CDC48 subfamily n=4 Tax=Euryarchaeota RepID=A6URF6_METVS Length = 781 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP------VLEKAGDLAAMLTNLEPH--DV 109 +L+ GPPG GKT LA VANE G N T +GP V E +L + E + + Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273 Query: 110 LFIDEIHRLSPVVEE 124 +FIDEI ++P +E Sbjct: 274 IFIDEIDAVAPKRDE 288 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L+FGPPG GKT LA VANE N + GP + EKA V Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603 Query: 110 LFIDEIHRLSP 120 +F DEI ++P Sbjct: 604 VFFDEIDSVAP 614 >UniRef50_A3CTB6 ATPase associated with various cellular activities, AAA_3 n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CTB6_METMJ Length = 325 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 22/135 (16%) Query: 57 HLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDL----------AAMLTNLEP 106 H+L+ G PG KTT+ IVA MG + G V + D+ A + P Sbjct: 48 HVLVEGLPGTAKTTIGKIVAKLMGYDFSRVQGAVDVQPADIIGIRIYDPEQKAFILRKGP 107 Query: 107 --HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRA 164 H+ + IDEI+RL+P + AM + Q I P A P F L T Sbjct: 108 IFHNFIMIDEINRLTPKTQSAFLEAMSERQTTIDGVTYPLAE------PYFALATQNTYD 161 Query: 165 GSLTSPL----RDRF 175 T PL +DRF Sbjct: 162 AEGTFPLIQVQKDRF 176 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 RA RP+ ++ VGQ + ++ I R D + H +F GP G GKTT A ++A Sbjct: 8 RAWRPQTFQDMVGQRHIIQTLQNAI-----REDRVSHAYLFNGPRGTGKTTAAKVLAK-- 60 Query: 80 GVNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAME 131 VN GP E + A +T DV+ ID I + + ++V Y P+ Sbjct: 61 AVNCE--RGPAEEPCNECDACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEV 118 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + E A ++ PP I ATT L + + R QR +F Sbjct: 119 RYKVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISR---CQRFDF 175 Query: 184 YQVPDLQYIVSR---SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF--AEVKH 238 QV L+ R R G+E +D +AR + G R A LL +V F + + Sbjct: 176 RQV-SLEEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGSRITL 234 Query: 239 DGTI 242 DG + Sbjct: 235 DGAV 238 >UniRef50_D0N5D3 Peroxisome biogenesis factor, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N5D3_PHYIN Length = 1103 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 10/72 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK--------AGDLAAMLTNLEPHD 108 +L++GPPG GKT LA+ VA+E G+N + GP VL K DL A + P Sbjct: 840 MLLYGPPGCGKTLLASAVAHECGLNFISVKGPEVLNKYIGASEQAIRDLFARAGSAAP-S 898 Query: 109 VLFIDEIHRLSP 120 VLF+DE ++P Sbjct: 899 VLFLDEFDSIAP 910 >UniRef50_D1VIN0 AAA ATPase central domain protein n=1 Tax=Frankia sp. EuI1c RepID=D1VIN0_9ACTO Length = 622 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 45/151 (29%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLR----GDALDHLLIFGPPGLGKTTLANI 74 ADR +RP+ L+E VGQ + + LR G ++++GPPG GKTTLA+I Sbjct: 61 ADR-LRPRGLDELVGQ------RHLLGPGSPLRRLVEGGGTTSVVLWGPPGTGKTTLAHI 113 Query: 75 VANEMGVNLRTTSG---------PVLEKAGDL---------------------AAMLTNL 104 V+ G R S V+++A D AA Sbjct: 114 VSRATGRRFRELSAVTAGVKDVRAVIDEARDALSSSRSNQSRRMVREPGLFSDAAQAPGG 173 Query: 105 E-PHD---VLFIDEIHRLSPVVEEVLYPAME 131 E P D VLFIDE+HR + ++ L PA+E Sbjct: 174 EVPVDLRTVLFIDEVHRFTRTQQDALLPAVE 204 >UniRef50_O05209 VCP-like ATPase n=10 Tax=Euryarchaeota RepID=VAT_THEAC Length = 745 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPH--DV 109 ++++GPPG GKT +A VANE G N + +GP + + L + + E + Sbjct: 227 VILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSI 286 Query: 110 LFIDEIHRLSPVVEEV 125 +FIDEI ++P EEV Sbjct: 287 IFIDEIDSIAPKREEV 302 >UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID=B2THM3_CLOBB Length = 428 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 14/118 (11%) Query: 23 IRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA--- 76 +RP +E++VGQ + + + IK+ K+ + + +GPPG GKTTLANI+A Sbjct: 8 MRPSKIEDFVGQRHILGENTPLYNLIKSKKIC-----NCIFYGPPGTGKTTLANIMAKYV 62 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMED 132 ++ L T+ V + ++ L NL + VL+IDE+ + ++ L +ED Sbjct: 63 DKKFYKLNATTASV-KDIQNITNELDNLLNYAGVVLYIDELQHFNKKQQQSLLEFIED 119 >UniRef50_Q58556 Cell division cycle protein 48 homolog MJ1156 n=121 Tax=cellular organisms RepID=Y1156_METJA Length = 903 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 16/140 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP------VLEKAGDLAAMLTNLEPH--DV 109 +L+ GPPG GKT LA VANE G N +GP V E +L + E + + Sbjct: 216 VLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSI 275 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIM-IGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 +FIDEI ++P +E ++ + +G R +IGAT R +L Sbjct: 276 IFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRG------QVVVIGATNRPNALD 329 Query: 169 SPLRDRFGIVQRLEFYQVPD 188 LR R G R VPD Sbjct: 330 PALR-RPGRFDREIVIGVPD 348 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 17/172 (9%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L+FGPPG GKT LA VANE G N + GP + EKA + Sbjct: 489 VLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCI 548 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS 169 +F DEI ++P L A+ D ++ ++ E ++ P ++ A T + Sbjct: 549 IFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDG-----MEEPKDVVVIAATNRPDIID 603 Query: 170 PLRDRFGIVQRLEFYQVPDLQY---IVSRSARFMGLEMSDDGALEVARRARG 218 P R G + R+ VPD + I R M L D E+A++ G Sbjct: 604 PALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNL-AEDVNLEELAKKTEG 654 >UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB Length = 437 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 38/193 (19%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA---NE 78 A+RP+ L+E VGQ + ++ + + ++ + L ++++GPPG+GKT++A V N+ Sbjct: 19 ALRPRSLDEVVGQKTLTAKGSVLRR--RIAANQLGSIVLYGPPGVGKTSIARAVGEMLNK 76 Query: 79 MGVNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 L T V + + D A + L +F+DE+HR S + L E+ D Sbjct: 77 EFKQLHATRAGVKDIRQLADEARIRPIL-----IFVDEVHRFSATQADDLLSICEEGTAD 131 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVS 194 IGATT+ +L L R I+ +LE + D++ +++ Sbjct: 132 --------------------FIGATTQNPYTALPKALVSRSTIL-KLEPIAIEDMEAVLA 170 Query: 195 RSARF---MGLEM 204 R MG+E+ Sbjct: 171 RGLEHLAEMGIEV 183 >UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 Tax=Acetobacteraceae RepID=B5ZIA7_GLUDA Length = 687 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 33/277 (11%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 P V R RP L++ +GQ S + I A L G ++ G G+GKTT A I Sbjct: 56 PYRVLARKYRPTTLDDLIGQ---DSTVRILRNAFAL-GRVAHAFMLTGVRGVGKTTTARI 111 Query: 75 VANEMG-VNLRTTSGPVLEKAG---DLAAMLTNLEPHDVLFIDEIHR-----LSPVVEEV 125 +A + V T GP + G + A+L + P DVL +D R + ++E Sbjct: 112 IARALNCVGPDGTGGPTADPCGVCANCVAILADRHP-DVLEMDAASRTGVDDVREIIEAT 170 Query: 126 LYPAMEDYQLDIMIGE-------GPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 + M+ +I E A ++ PP T + ATT + + R Sbjct: 171 RFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSR-- 228 Query: 177 IVQRLEFYQVP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 QR + +VP DL R AR G E + D +AR A G+ R LL + Sbjct: 229 -CQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQG 287 Query: 235 EVKHDGTISADIAAQAL-DMLNVDAEG--FDYMDRKL 268 V+ DG +A I A+ + DML + G FD ++ L Sbjct: 288 SVEGDG--AAPIGAERVADMLGLADRGRVFDLLEAVL 322 >UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ66_ALIAD Length = 586 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 97/261 (37%), Gaps = 62/261 (23%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVAN-- 77 RA RP+ E+ VGQP VR + +K+ +L H +F GP G GKT+ A ++A Sbjct: 8 RAYRPQTFEDLVGQPHVRQTLTNALKSGQLA-----HAYLFCGPRGTGKTSTAKLLAKAV 62 Query: 78 ---------------------EMGVNLRTTSGPVLEKAG--------DLAAMLTNLEPHD 108 + G N+ G D L + Sbjct: 63 NCLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHVHYLPTMAKKK 122 Query: 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 V +DE+H L+P L +E+ ++ F L ATT L Sbjct: 123 VYIVDEVHMLTPEAFNALLKTLEEPPAHVL----------------FVL--ATTEPHRLP 164 Query: 169 SPLRDRFGIVQRLEFYQVPDLQYIVSR---SARFMGLEMSDDGALEVARRARGTPRIANR 225 + + R QR +F ++ + IV R A+ G+E +D +A A G R A Sbjct: 165 ATIISR---CQRFDFRRIAP-EAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALA 220 Query: 226 LLRRVRDFAEVKHDGTISADI 246 L + F + D T AD+ Sbjct: 221 LFEQAAAFGNGRIDDTTVADV 241 >UniRef50_C4V1V9 ATP-dependent protease n=2 Tax=Selenomonas RepID=C4V1V9_9FIRM Length = 713 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 96/238 (40%), Gaps = 66/238 (27%) Query: 23 IRPKLLEEYVGQPQ-VRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV---ANE 78 +RPK +E VGQ + VRS M AKL HLL++GPPG+GKTT A +V A + Sbjct: 173 LRPKKFDEIVGQERAVRSLM------AKLSSPYPQHLLLYGPPGVGKTTAARLVLEAAKK 226 Query: 79 MGVNLRTTSGPVLEKAG-----DLAAMLTNL--EPHD----------------------- 108 V+ P +E G D M L HD Sbjct: 227 RAVSPFGADAPFVETDGTTLRWDPRDMTNPLLGSVHDPIYQGAQKSLADSGVPEPKPGLV 286 Query: 109 ------VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE--------GPAARSIKIDLPP 154 +LFIDEI + +++ L +ED + P R + + P Sbjct: 287 TDAHGGILFIDEIGEMDEMLQNKLLKVLEDKRAYFESAYYDPDDKRVPPYIRKLFEEGAP 346 Query: 155 --FTLIGATTRAGSLTSP-LRDRFGIVQRLEFYQVP----DLQYIVSRSARFMGLEMS 205 F LIGATTR +P LR R E Y P ++ IV +A+ + +E++ Sbjct: 347 ADFVLIGATTREPDHINPALRSRCA-----EIYFEPLTPVHIRTIVENAAKRLNVELA 399 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/331 (24%), Positives = 136/331 (41%), Gaps = 46/331 (13%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIV 75 +V R RPK E V Q V+ + ++ +++ H IF GP G GKTTLA I+ Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAI-----IGAIQKNSVAHGYIFAGPRGTGKTTLARIL 56 Query: 76 ANEMGVNLR-----TTSGPVLEKAGDLAAM-LTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 A + R S + + M + L+ IDEI R+ V Y Sbjct: 57 AKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVG---YRP 113 Query: 130 ME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 ME Y++ I + E A ++ PP + ATT + + R Q Sbjct: 114 MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR---CQV 170 Query: 181 LEFYQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 EF +PD ++ + A G+E+ + +A+RA G R A +L +V F+E Sbjct: 171 FEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE--- 227 Query: 239 DGTISADIAAQALDMLNVDAEGFDYM------DRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 G I + +AL ++ + DY+ D K + V+D + + L Sbjct: 228 -GKIDLETVHRALGLIPIQVVR-DYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLI----- 280 Query: 293 ERETIEDVLEPYLIQQGFLQRTPRGRMATTR 323 +E +ED++E ++G Q + + +R Sbjct: 281 -QEAVEDLVEDLERERGVYQVSANDIVQVSR 310 >UniRef50_C6A499 Pk-cdcA protein n=28 Tax=Euryarchaeota RepID=C6A499_THESM Length = 839 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 38/225 (16%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPH--DV 109 +L++GPPG GKT LA VANE + +GP + E L + E + + Sbjct: 250 VLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLRDIFKEAEENAPSI 309 Query: 110 LFIDEIHRLSPVVEEV---LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS 166 +FIDEI ++P EEV + + L +M G + I +IGAT R + Sbjct: 310 IFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGLKSRGKVI--------VIGATNRPDA 361 Query: 167 LTSPLRDRFGIVQRLEFYQVPDLQ---YIVSRSARFMGLEMSDD--GALEV-----ARRA 216 L LR R G R VPD Q I+ R M LE D L V R A Sbjct: 362 LDPALR-RPGRFDREIEVGVPDKQGRKEILQIHTRGMPLEPEYDKRSVLRVLNSLKNREA 420 Query: 217 RGTPRIANRLLRRVRDFAE-------VKHDGTISADIAAQALDML 254 RI +++++ + E +K DG + ++ A+ +D + Sbjct: 421 FDKERI-EEMIQKIENAKEESDIKITLKEDGELYKEVRARLIDSM 464 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK-AGDLAAMLTNL------EPHDV 109 +L++GPPG GKT LA VANE N GP VL K G+ + + V Sbjct: 585 ILLYGPPGTGKTLLAKAVANESEANFIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTV 644 Query: 110 LFIDEIHRLSPV 121 +FIDE+ ++P+ Sbjct: 645 VFIDEVDSIAPM 656 >UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D8G6_MYXXD Length = 444 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 37/185 (20%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ +E++GQ + + + + A+ L +GPPG+GKTTLA ++A + Sbjct: 24 MRPRTPDEFIGQSHLLGPGRPLRQLIERK--AIVSSLFWGPPGVGKTTLARMMATGVDAE 81 Query: 83 LRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 S + E + + VLF+DEIHR + V+E P +E Sbjct: 82 FVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNVQEQALPHVESGL-- 139 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ-----VPDLQY 191 F L+GATT S R +V R +Q V D+Q Sbjct: 140 ------------------FVLLGATTENVSFEV----RPALVSRCRVFQLKELTVADIQS 177 Query: 192 IVSRS 196 ++R+ Sbjct: 178 ALTRA 182 >UniRef50_A1SUB2 Cell division control protein 48 ATPase of AAA family CDC48 subfamily n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SUB2_PSYIN Length = 732 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 8/82 (9%) Query: 53 DALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK-AGDLAAMLTNL------ 104 DA +LI+GPPG GKT +A I+A+E N + SGP ++ K G+ A L + Sbjct: 213 DAPKGVLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGR 272 Query: 105 EPHDVLFIDEIHRLSPVVEEVL 126 + ++FIDEI ++P ++V+ Sbjct: 273 KGPSIIFIDEIDAIAPRRDQVV 294 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 25/34 (73%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL 91 LL+ GPPG+GKT +A VANE GVN+ + GP L Sbjct: 491 LLLCGPPGVGKTLIAKAVANESGVNVISVKGPAL 524 >UniRef50_B7FSL4 Lon protease homolog n=2 Tax=Bacillariophyta RepID=B7FSL4_PHATR Length = 882 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 101/270 (37%), Gaps = 60/270 (22%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKT 69 G E+ + R L ++ G V+ + FI KLRG +L GPPG GKT Sbjct: 383 GVETEENFDIQKARKTLDRDHYGLDDVKDTILEFIAIGKLRGSVQGKILCLSGPPGTGKT 442 Query: 70 TLANIVANEMGVNL------------------RTTSGPVLEKAGDLAAMLTNLEPHDVLF 111 ++A VA+ +G RT G + K P V+ Sbjct: 443 SIAKSVADALGRQFFRFSVGGLSDVSEIKGHRRTYIGAMPGKLIQCLKATGTTNP--VVL 500 Query: 112 IDEIHRL--------SPVVEEVLYPAME----DYQLDIMIGEGPAARSIKIDLPPFTLIG 159 IDEI +L + + EVL P DY LD + +D+ I Sbjct: 501 IDEIDKLGTGFRGDPASALLEVLDPGQNSTFRDYFLD-----------VPVDISKVLFIC 549 Query: 160 ATTRAGSLTSPLRDRFGIVQRLEFYQVPDL-----QYIVSRSARFMG-------LEMSDD 207 + PL DR ++ RL Y +P+ QY+V +S R G L+++ D Sbjct: 550 TANELERIPGPLLDRMEVI-RLSGYDLPEKVAIAEQYLVPKSMRDSGLLGVPETLKLTID 608 Query: 208 GALEVAR---RARGTPRIANRLLRRVRDFA 234 +AR R G +A + R R A Sbjct: 609 AVRSLARWYAREAGVRNLAKYIDRITRKLA 638 >UniRef50_Q4PF17 Putative uncharacterized protein n=4 Tax=Eukaryota RepID=Q4PF17_USTMA Length = 878 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHD--------V 109 +L+ GPPG GKT LA VA E+GV + S P + + T + D + Sbjct: 188 VLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAASIAPCI 247 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS 169 LFIDEI ++P E ME + ++ K D P +IGAT R SL Sbjct: 248 LFIDEIDAITP-KRETAQREMERRIVAQLLTSLDDLSWEKTDGKPVMIIGATNRPDSLDP 306 Query: 170 PLR 172 LR Sbjct: 307 ALR 309 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA VANE N + GP L EKA V Sbjct: 597 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARTSSPCV 656 Query: 110 LFIDEIHRLSP 120 +F DE+ L P Sbjct: 657 IFFDELDALVP 667 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 33/233 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK ++ VGQ + + ++ + A K H +F G G GKTT + IVA + Sbjct: 7 RKWRPKTFDDVVGQEHITATLKNEVAAGKF-----SHAYLFTGSRGTGKTTCSKIVAKAV 61 Query: 80 GVNLRTTSGPVLEKAG----DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY-PAMEDYQ 134 P E A D ++L +E D + + + + EE + P++ Y+ Sbjct: 62 NCERPVDGNPCNECAACRGIDDGSVLDVVEI-DAASNNGVDNIRQLREEAYFLPSVVKYR 120 Query: 135 LDI-----MIGEGPAARSIKI-DLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I M+ +G +KI + PP I ATT + + R QR +F+++ Sbjct: 121 VYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSR---CQRFDFHRI 177 Query: 187 PD------LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 L YI + + ++DD AL +AR + G R A LL F Sbjct: 178 RSRVIADRLLYIAEQES----FSLADDAALLIARLSDGGMRDALSLLDLCASF 226 >UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696_ARATH Length = 525 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 45/278 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP+ L++ VGQ + S + A + + L ++ +GPPG GKT++A + N Sbjct: 107 MRPRTLDDVVGQDHLLSPSSLLRSA--VESNRLPSIVFWGPPGTGKTSIAKSLINSSKDP 164 Query: 81 -----VNLRT-TSGPVLEKAGDLAAMLTNLE--PHDVLFIDEIHRLSPVVEEVLYPAMED 132 V+L TSG + +A NLE VLF+DE+HR + ++ P +ED Sbjct: 165 SLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPVIED 224 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPL--RDRFGIVQRLEFYQVPD 188 + IGATT S L +PL R R + L+ V Sbjct: 225 GSI--------------------LFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVET 264 Query: 189 -LQYIVSRSARFMGLEMS---DDGALE-VARRARGTPRIANRLLRRVRDFAEVK--HDGT 241 L+ V S R GL S DD +E +A G R+A L A + D Sbjct: 265 LLRRAVDDSER--GLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAV 322 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 +S D A +AL ++ + L+ A+ GG Sbjct: 323 VSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGG 360 >UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteroidales RepID=C2MCK6_9PORP Length = 429 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 29/255 (11%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ +E +GQ + + +K+A +G L GP G+GKT+ A I+A Sbjct: 7 VSARKYRPQTFDEMLGQEAIC----LTLKSAIQQGKIAHAYLFCGPRGVGKTSAARILAR 62 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTN-------LEPHDVLFIDEIHRLSPVVEEVLYPAM 130 + T G + A L L+ +D+I RL+ V + P Sbjct: 63 TINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDV--YIRPQQ 120 Query: 131 EDYQLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I M+ G +K ++ PP I ATT + + R Q + Sbjct: 121 GKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSR---CQVYD 177 Query: 183 FYQVPDLQYI--VSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 F +P Q + R A GL+ +AR A G R A L R+ A DG Sbjct: 178 FKPIPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRL---ASTAQDG 234 Query: 241 TISADIAAQALDMLN 255 IS + Q L++L+ Sbjct: 235 VISYEQTLQTLNILD 249 >UniRef50_C0SG10 CdcH n=2 Tax=Onygenales RepID=C0SG10_PARBP Length = 801 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 67/172 (38%), Gaps = 52/172 (30%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 LE+ + P R Q+ K RG +L+ GPPG GKT +AN A E+GV S Sbjct: 240 LEDLIVLPMTRPQVYSSSKVQPPRG-----VLLHGPPGCGKTMIANAFAAELGVPFIAIS 294 Query: 88 GPVL----------------EKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV------ 125 P + E+A +A L +FIDEI ++P E Sbjct: 295 APSIVSGMSGESEKALREHFEEAKKVAPCL--------IFIDEIDAITPKRESAQREMEK 346 Query: 126 -----LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLR 172 L M+D L+ K D P ++ AT R SL + LR Sbjct: 347 RIVAQLLTCMDDLALE------------KTDGKPVIVLAATNRPDSLDAALR 386 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 22/164 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA VANE N + GP L E+A + V Sbjct: 575 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRARSSVPCV 634 Query: 110 LFIDEIHRLSPVVEEVLYPA---MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS 166 +F DE+ L P ++ L A + + L + G G A + I + I AT R Sbjct: 635 IFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQGIYV-------IAATNRP-D 686 Query: 167 LTSPLRDRFGIVQRLEFYQVPDLQ---YIVSRSARFMGLEMSDD 207 + P R G ++ L F +P I+ R + +E SD+ Sbjct: 687 IIDPAMLRPGRLETLLFVNLPSADERVEILQTLVRNLPIEFSDE 730 >UniRef50_A2QW62 Function: WHIP of M. musculus is involved in aging control n=3 Tax=Aspergillus RepID=A2QW62_ASPNC Length = 513 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 33/152 (21%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ ++ VGQ + + + D L +L+++GPPG GKTT+A I+ M Sbjct: 110 VRPRCFDDIVGQKSLIGPNGTLRRL--IEQDELPNLILWGPPGSGKTTIARIIGPMMRRK 167 Query: 83 LRTTSG--PVLEKAGDLAAMLTNLEPHD-----VLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + S + + D+ T HD ++F DEIHRL+ +++ AM Sbjct: 168 VYEISSLTTITTEYRDIVTKAT----HDGRNKSIIFCDEIHRLTRPQQDIFLDAM----- 218 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSL 167 R KI TLIGATT SL Sbjct: 219 ----------RRNKI-----TLIGATTENPSL 235 >UniRef50_A6URV8 Replication factor C large subunit n=12 Tax=Methanococcales RepID=RFCL_METVS Length = 492 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RPK L + G + + + +I++ +RG+ +L+FGPPG GKTT+A+ +AN+ ++ Sbjct: 9 RPKSLNDVAGHSKTKEALCYWIESF-IRGNKQKPVLLFGPPGSGKTTMAHAIANDYNFDV 67 >UniRef50_Q8TY20 ATPase of the AAA+ class n=3 Tax=cellular organisms RepID=Q8TY20_METKA Length = 1249 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 19/111 (17%) Query: 20 DRAIRPKLLEEYVGQPQVRSQM--EIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 DR I +L+ EYV P R ++ E+ IK K +L++GPPG GKT LA VAN Sbjct: 221 DREI--ELIREYVELPLKRPELLKELGIKPPK-------GVLLYGPPGTGKTLLAKAVAN 271 Query: 78 EMGVNLRTTSGP-VLEK-AGDLAAMLTNL------EPHDVLFIDEIHRLSP 120 E G + +GP ++ K G+ A + + +++IDEI ++P Sbjct: 272 ECGAKFYSINGPEIMSKYYGESEARIREVFEEARKNAPAIIYIDEIDAIAP 322 >UniRef50_A6QX60 Ribosome biogenesis ATPase RIX7 n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6QX60_AJECN Length = 712 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 74/186 (39%), Gaps = 38/186 (20%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 LE+ + P R Q+ K RG +L+ GPPG GKT +AN A E+GV S Sbjct: 189 LEDLLVLPMTRPQVYSSSKVQPPRG-----VLLHGPPGCGKTMIANAFAAELGVPFIAIS 243 Query: 88 GPVLEKAGDLAAMLTNLEPHD--------VLFIDEIHRLSPVVEEV-----------LYP 128 P + + E D ++FIDEI ++P E L Sbjct: 244 APSIVSGMSGESEKAIREHFDEAKKVAPCLIFIDEIDAITPKRESAQREMEKRIVAQLLT 303 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPD 188 M+D L+ K D P ++ AT R SL + LR G +R + D Sbjct: 304 CMDDLALE------------KTDGKPVIVLAATNRPDSLDAALRRAPG--KRTPGFVGAD 349 Query: 189 LQYIVS 194 L +VS Sbjct: 350 LNDLVS 355 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 22/164 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L++GPPG GKT LA VANE N + GP L E+A + V Sbjct: 488 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRARSSVPCV 547 Query: 110 LFIDEIHRLSPVVEEVLYPA---MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS 166 +F DE+ L P ++ L A + + L + G G A + I + I AT R Sbjct: 548 IFFDELDALVPRRDDTLSEASARVVNTLLTELDGLGSARQGIYV-------IAATNRP-D 599 Query: 167 LTSPLRDRFGIVQRLEFYQVPDLQ---YIVSRSARFMGLEMSDD 207 + P R G ++ L F +P I+ R + +E SD+ Sbjct: 600 IIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDN 643 >UniRef50_A6DA89 ATP-dependent protease La n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DA89_9PROT Length = 774 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 53/281 (18%) Query: 48 AKLRGDALD--HLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDL-------- 97 AK RG+ L GPPG+GKT+LAN +A + NL + LE +L Sbjct: 336 AKKRGEEFSGATLCFVGPPGVGKTSLANSIAKALDKNLVRIALGGLEDVNELRGHRRTYI 395 Query: 98 --------AAMLTNLEPHDVLFIDEIHRLS-------PVVEEVLYPAMEDYQLDIMIGEG 142 ++ + + V+ +DEI ++S V+ EVL P + D+ + Sbjct: 396 GAMPGRIAQGIINAKQMNPVIVLDEIDKISRYRGDPTAVLLEVLDPEQNSHFRDLYL--- 452 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV--------QRLEFYQVPDLQYIVS 194 + +DL I ++ +PLRDR ++ ++ E + +Y++ Sbjct: 453 ----NFDLDLSKVLFIATANDPSTIPAPLRDRMEMIFVGSYTPQEKFEIAK----RYLIP 504 Query: 195 RSARFMGLEMSDDGALEVARRA---RGTPRIANRLLRRV-----RDFAEVKHDGTISADI 246 + + L+ S+ + A R + T R LRR+ R A +G + Sbjct: 505 QEMKKHSLKKSEISITDAALREIIDKYTKEAGVRNLRRIIAKIMRKAAIKILEGEKQVKV 564 Query: 247 AAQAL-DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNL 286 + L + L G + +D+K + V++ PVG D L Sbjct: 565 TLKNLKEFLEKPIFGIEEIDKKDKIGVVNGLAWTPVGGDVL 605 >UniRef50_A1RSA2 Replication factor C small subunit 1 n=29 Tax=Thermoprotei RepID=RFCS1_PYRIL Length = 329 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 5/56 (8%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 RP+ +E V +V+S++ F+K+ + HLL +GPPG GKTT+A ++A E+ Sbjct: 11 RPRSFDEVVDLEEVKSRLREFVKSGNM-----PHLLFYGPPGTGKTTMALVLAREL 61 >UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U314_PHYPA Length = 498 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQV---RSQMEIFIKAAKLRGDALDHLLIFGP 63 L+ +G +L E +A+R +RP ++ VGQ + R + I A ++L ++ +GP Sbjct: 70 LVGSGKSL-EPLAER-MRPASVDLVVGQDHLLGPRCMLRNLIDA-----NSLSSIIFWGP 122 Query: 64 PGLGKTTLANIVANEMG---VNLRTTSGPVLEKAGDL--AAMLTNLEPHDVLFIDEIHRL 118 PG GKT+L +A + V L S + E L A L +L +DEIHR Sbjct: 123 PGTGKTSLVQTIARAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGERTLLLLDEIHRF 182 Query: 119 SPVVEEVLYPAMEDYQLDIMIGEGPAARSIKID 151 + +V P +E + ++IG S +I+ Sbjct: 183 NKAQLDVFLPCVEAGHI-VLIGATTENPSFEIN 214 >UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK0_9BACL Length = 569 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 44/233 (18%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDH-LLIFGPPGLGKTTLANIVANEM 79 R RP+ + VGQ + S +K A + D + H L +G G GKT++A I ANE+ Sbjct: 7 RKYRPQTFNDIVGQNHIVS----VLKNA-IDKDQISHAYLFYGSRGTGKTSIAKIFANEV 61 Query: 80 GVN------------LRTTSGPVLEKAGDLAAMLTNL---EPHDVLFIDEIHRLSPVVEE 124 N + S +++ D+ + L + V IDE+H L+ Sbjct: 62 NGNEIYQKENVDIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTAAFN 121 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 L +E+ P A I I ATT + + + R QR EF Sbjct: 122 ALLKTLEE----------PPAHVI--------FILATTEIHKIPATILSR---CQRFEFK 160 Query: 185 QVPDLQYI--VSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + Q I + A+ L + + ++A A+G R A +L +V ++AE Sbjct: 161 NLSQEQLIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYAE 213 >UniRef50_C4PZ87 Lon protease homolog n=1 Tax=Schistosoma mansoni RepID=C4PZ87_SCHMA Length = 1036 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 51/258 (19%) Query: 29 EEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVA----------- 76 E++ G V+ ++ FI ++L+G +L F GPPG+GKT++AN +A Sbjct: 528 EDHYGMDDVKKRILEFIAVSQLKGSTQGKILCFCGPPGVGKTSIANSIARALNRKYFRFS 587 Query: 77 -------NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHD-VLFIDEIHRL--------SP 120 +E+ + RT G + G + L + + ++ IDEI +L + Sbjct: 588 VGGMSDVSEIKGHRRTYVGAM---PGKIIQCLKKTKTENPLILIDEIDKLGRGWQGDPAS 644 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 + E+L P LD + + +DL I + ++ PLRDR +++ Sbjct: 645 ALLELLDPEQNANFLDHYL-------DVTVDLSRVLFITTANQLDTIPEPLRDRMEVIEV 697 Query: 181 LEFYQVPDL----QYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRR--VRDFA 234 + + L +Y++ + R GL DD L V A R+ + R VR+ Sbjct: 698 SGYVEEEKLAIAKRYLLPLATRNCGL---DDNRLLVNDNA--IKRLIKQYCRESGVRNLQ 752 Query: 235 EVKHDGTISADIAAQALD 252 KH I +A Q ++ Sbjct: 753 --KHIEKIVRKVAYQLVN 768 >UniRef50_UPI000186ECB9 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186ECB9 Length = 942 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +LI GPPG GKT LA VANE G+N + GP L E+A V Sbjct: 701 ILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRRCFQRARSSAPCV 760 Query: 110 LFIDEIHRLSP 120 +F DE+ L P Sbjct: 761 IFFDELDSLCP 771 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 29/228 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RPK+ E+ V Q + ++ +++ D + H IF GP G GKTT A I+A + Sbjct: 7 RKYRPKVFEDVVAQEHITKTLK-----NQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAV 61 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDY 133 P E ++ + N + DVL ID ++ + + +EV Y P+M Sbjct: 62 NCLNPKDGNPCNE--CEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKR 119 Query: 134 QLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I M+ G +K ++ PP I ATT + + + R QR +F + Sbjct: 120 RVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSR---CQRFDFKR 176 Query: 186 VPDLQYIVSRSARFMGLEM--SDDGALE-VARRARGTPRIANRLLRRV 230 + ++ I R + + LE DD AL ++++A G R A +L R Sbjct: 177 IS-VKDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERC 223 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 29/233 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RP+ ++ VGQ V + + LR + L H +F GP G GKT+ A I+A + Sbjct: 8 RVYRPQTFQDVVGQEHVTTTLR-----NALRENRLSHAYLFNGPRGTGKTSAAKIMAKAV 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVE----EVLY 127 P D ++N DVL ID EI + V+ +V Y Sbjct: 63 NCEQPIDGEPC--NQCDTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVRY 120 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ ++ E A ++ PP I ATT L + + R QR +F++ Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISR---CQRFDFHR 177 Query: 186 VPDLQYIV---SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 +P L+ +V R + G+++ + VA+ A G R A LL + +++ Sbjct: 178 IP-LRVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSK 229 >UniRef50_UPI000192574D PREDICTED: similar to Werner helicase interacting protein 1 n=1 Tax=Hydra magnipapillata RepID=UPI000192574D Length = 527 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 28/141 (19%) Query: 23 IRPKLLEEYVGQPQVRSQ---MEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 +RP + + GQ ++ E+F+ + + L+++GPPG GKT+ A+I++ Sbjct: 115 MRPNNFDNFYGQNSFGAKNLLKELFV------SNKIPSLILWGPPGCGKTSFAHIISRRC 168 Query: 80 G--------VNLRTTSGPVLE-----KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVL 126 V L T + + K LT+ + VLFIDEIHR + + ++ Sbjct: 169 KESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKT--VLFIDEIHRFNKMQQDTF 226 Query: 127 YPAMEDYQLDIMIG---EGPA 144 P +ED + ++IG E P+ Sbjct: 227 LPYVEDGTI-VLIGATTENPS 246 >UniRef50_B1AII3 ATPase, AAA family n=14 Tax=Ureaplasma RepID=B1AII3_UREP2 Length = 408 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 P +++ VGQ + EI I + + +L+ +GPPG+GK++LA ++A ++ V Sbjct: 11 NPHSIDDIVGQKYLLD--EIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPF 68 Query: 84 RTTSGPVLEKAGDLAAMLTN-LEPHD-VLFIDEIHRLSPVVEEVLYPAME 131 PV++ L ++ L+ ++ ++ IDEIHRL+ +++L P +E Sbjct: 69 -AFFNPVVDSKKQLMQIIEQALDLNNFIIIIDEIHRLNKDKQDILLPIIE 117 >UniRef50_Q4QF14 Peroxisome assembly protein, putative n=2 Tax=Leishmania RepID=Q4QF14_LEIMA Length = 959 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Query: 42 EIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAG 95 E+F K K R +L +GPPG GKT LA VA EMG+N + GP L E Sbjct: 672 EVFEKGMKKRTG----VLFYGPPGCGKTLLAKAVATEMGMNFISVKGPELINQYVGESER 727 Query: 96 DLAAMLTNLEPHD--VLFIDEIHRLSP 120 ++ + + ++F DEI L+P Sbjct: 728 NIRLLFQRARDNSPCIVFFDEIDALAP 754 >UniRef50_Q1NXJ5 Peptidase S16, ATP-dependent protease La n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NXJ5_9DELT Length = 827 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 40/180 (22%) Query: 29 EEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEMGVN-LRTT 86 E++ G +++ ++ F+ KL+ D +L F GPPG+GKT+L +A MG N +R + Sbjct: 372 EDHYGLDKIKKRIIEFLAVRKLKQDMRGPILCFVGPPGVGKTSLGQSIARSMGRNFVRIS 431 Query: 87 SGPVLEKA--------------GDLAAMLTNLEPHDVLF-IDEIHRL--------SPVVE 123 G V ++A G + L H+ LF +DE+ +L S + Sbjct: 432 LGGVRDEAEIRGHRRTYIGALPGRIIQSLRKAGAHNPLFMLDEVDKLGMDFRGDPSSALL 491 Query: 124 EVLYP----AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 179 EVL P + D+ L+I DL I ++ PL+DR +++ Sbjct: 492 EVLDPEQNFSFSDHYLEIA-----------FDLSKVMFITTANLLDNIPGPLKDRMEVIE 540 >UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 Tax=Cystobacterineae RepID=A7HGU5_ANADF Length = 606 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 100/234 (42%), Gaps = 33/234 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RP+ E GQ V + +K +L H +F GP G+GKTT A +VA Sbjct: 8 RKYRPQQFGEMSGQQHVVRTLSNALKTGQL-----AHAFLFTGPRGVGKTTTARLVAK-- 60 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPH--DVLFIDE-----IHRLSPVVEEVLY-PAME 131 L GP E G + E DV+ ID + + +VE V Y PA + Sbjct: 61 --ALNCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYRPARD 118 Query: 132 DYQLDI-----MIGEGPAARSIK-IDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ + M+ G +K ++ PP + ATT + + R QR +F Sbjct: 119 RYKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSR---CQRFDF 175 Query: 184 YQVPDLQYIVSRSARFM---GLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 ++ LQ I + A+ G+ ++ VAR+A G R A LL +VR A Sbjct: 176 RRL-TLQQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAA 228 >UniRef50_Q2NJI8 ATPase, AAA family n=7 Tax=Mollicutes RepID=Q2NJI8_AYWBP Length = 414 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 A+RP + + +GQ + + I + L+ + L+ +G PG+GK++LA ++AN++ + Sbjct: 9 ALRPSTITDIIGQSHLINDQNGII-SRMLKNNYASSLIFYGVPGIGKSSLAQVLANDLQI 67 Query: 82 NLRTTSGPVLEKAGDLAAMLT---NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + + +K L ++ N + +L I+EIHR++ +++L +E+ L Sbjct: 68 KYDIFNAAI-DKKSKLEKIIQQALNFKKF-ILIIEEIHRMNKDRQDILLQYLENGHL 122 >UniRef50_B4QKE0 GD14011 n=1 Tax=Drosophila simulans RepID=B4QKE0_DROSI Length = 611 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Query: 41 MEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------E 92 M + +AA + A+ +L+ GPPG GKT LA +ANE G+N + GP L E Sbjct: 352 MALVSRAASV---AVKRVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 408 Query: 93 KAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 +A V+F DE L P Sbjct: 409 RAVRACFQRARNSAPCVIFFDEFDSLCP 436 >UniRef50_C9SZ92 Cell division cycle protein (Fragment) n=3 Tax=Eukaryota RepID=C9SZ92_VERA1 Length = 634 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPHD--V 109 +L++GPPG GKT +A VANE G +GP + E +L E + + Sbjct: 256 VLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI 315 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIM-IGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 +FIDEI ++P E+ ++ + +G ARS ++ AT R S+ Sbjct: 316 IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARS------NVVVMAATNRPNSID 369 Query: 169 SPLRDRFGIVQRLEFYQVPD 188 LR RFG R +PD Sbjct: 370 PALR-RFGRFDREVDIGIPD 388 Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 L+E V P +M + + RG +L +GPPG GKT LA VANE N + Sbjct: 472 LKESVQYPVDHPEMFLKFGLSPSRG-----VLFYGPPGTGKTMLAKAVANECAANFISVK 526 Query: 88 GPVL 91 GP L Sbjct: 527 GPEL 530 >UniRef50_UPI000180C928 PREDICTED: similar to peroxin1 n=1 Tax=Ciona intestinalis RepID=UPI000180C928 Length = 1270 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 10/72 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK--------AGDLAAMLTNLEPHD 108 +L+FGPPG GKT +A +VANE +N + GP VL K DL + P Sbjct: 868 VLLFGPPGCGKTLIAGVVANECDLNFISIKGPEVLSKYIGASEAAVRDLFSRAKAAAPC- 926 Query: 109 VLFIDEIHRLSP 120 VLF DE L+P Sbjct: 927 VLFFDEFDSLAP 938 >UniRef50_C3XWH4 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XWH4_BRAFL Length = 859 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 26/120 (21%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEKAGDLAAMLTNLEPHDVLFIDEIH 116 +L+FGPPG GKT +A ++A E+G T +GP VL K ++FIDE+ Sbjct: 379 VLLFGPPGTGKTMVARVLAAEIGATFITINGPEVLSKT------------PSIIFIDELD 426 Query: 117 RLSPVVEEVLYPAMED----YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLR 172 L P E V ME L +M G G + + ++GAT R ++ LR Sbjct: 427 ALCPKRENV-QSEMEKRVVATLLTLMDGSGVPGQVV--------VLGATNRPDAVDPALR 477 >UniRef50_D1Z2G9 Cell division control protein 48 n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2G9_METPS Length = 839 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPH--DV 109 +L+ GPPG GKT LA VANE G + +GP + E L + N + + Sbjct: 229 VLLHGPPGTGKTLLAKAVANECGAEFFSIAGPEIMSKYYGESEQRLREIFENARDNAPSI 288 Query: 110 LFIDEIHRLSPVVEEV 125 +FIDE+ ++P EEV Sbjct: 289 IFIDELDSIAPRREEV 304 >UniRef50_A9A5W4 AAA family ATPase, CDC48 subfamily n=2 Tax=Thaumarchaeota RepID=A9A5W4_NITMS Length = 721 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 8/75 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK-AGDLAAMLTNL--EPHD----V 109 +L++GPPG GKT LA ++A+E N+ +GP ++ K G+ A L ++ E D + Sbjct: 216 ILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDNSPSI 275 Query: 110 LFIDEIHRLSPVVEE 124 +FIDEI ++P EE Sbjct: 276 IFIDEIDAIAPKREE 290 >UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellular organisms RepID=B1HUL5_LYSSC Length = 420 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 40/237 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE---- 78 +RP L+E VG K ++ + + +L++G PG+GKT++AN +A Sbjct: 1 MRPLTLDEIVGHQDFIGPNTALYKM--IQNEHVPSMLLYGEPGIGKTSIANAIAGSSQLP 58 Query: 79 -MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 +N +E A + + +LF+DEIHR + + ++ L P +E+ + Sbjct: 59 FFALNATRAGKKDVEDIVQEARISGKV----LLFLDEIHRFNKLQQDTLLPHVENGSI-- 112 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 LIGATT + +R R G + +L+ +L +V + Sbjct: 113 ------------------VLIGATTENPYHDVNPAIRSRCGEIYQLKRLTKENLMELVEK 154 Query: 196 S----ARFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 + R +G ++D +A A G R A LL + ++ TI+AD Sbjct: 155 ALADEKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAAD 211 >UniRef50_Q9LPN2 F2J10.1 protein n=12 Tax=Embryophyta RepID=Q9LPN2_ARATH Length = 627 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 14/112 (12%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 ED+ K L E V P R E+F + LR +L+FGPPG GKT LA + Sbjct: 338 EDIGALEDVKKALNELVILPMRRP--ELFARGNLLR--PCKGILLFGPPGTGKTLLAKAL 393 Query: 76 ANEMGVNLRTTSGPVLEKA--GD-------LAAMLTNLEPHDVLFIDEIHRL 118 A E G N + +G L GD L + T L P ++F+DEI L Sbjct: 394 ATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPV-IIFVDEIDSL 444 >UniRef50_Q8NB90 Spermatogenesis-associated protein 5 n=33 Tax=Fungi/Metazoa group RepID=SPAT5_HUMAN Length = 893 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 42/164 (25%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP-VLEK-AGDLAAML------TNLEPHDV 109 +L++GPPG GKT +A VANE+G + +GP ++ K G+ A L L + Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449 Query: 110 LFIDEIHRLSPV-------VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATT 162 +FIDE+ L P VE+ + ++ L +M G G ++ ++GAT Sbjct: 450 IFIDELDALCPKREGAQNEVEKRVVASL----LTLMDGIGSEVSEGQV-----LVLGATN 500 Query: 163 RAGSLTSPLR-----------------DRFGIVQRLEFYQVPDL 189 R +L + LR DR I+Q+L +VP L Sbjct: 501 RPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKL-LRRVPHL 543 >UniRef50_Q0W6B6 Putative cell division cycle protein 48 n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6B6_UNCMA Length = 942 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLTNLEPH--DV 109 +L+FGPPG GKT +A VA+E + SGP + E L + E + + Sbjct: 219 VLLFGPPGTGKTMIAKAVASETDAHFINISGPEIMSKYYGESEKQLRDIFKEAEDNAPSI 278 Query: 110 LFIDEIHRLSPVVEEV 125 +FIDEI ++P EEV Sbjct: 279 IFIDEIDSIAPKREEV 294 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +++FGPPG GKT LA VANE N + GP + EKA + Sbjct: 677 IMMFGPPGTGKTLLAKAVANESEANFISIKGPEILNKYVGESEKAIRETFRKARQSAPTI 736 Query: 110 LFIDEIHRLSPV 121 +F DEI ++P Sbjct: 737 IFFDEIDAIAPT 748 >UniRef50_A3ERK9 Probable ATPase, AAA family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERK9_9BACT Length = 444 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 29 EEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRT--- 85 EE++GQP + + I + +R + ++I GPPG GK+ +++ + + Sbjct: 23 EEFLGQPHLMGERGILRRLIAVR--SFRSMVIHGPPGCGKSAFVHLLQKVLPFHFEVVRA 80 Query: 86 --TSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 +SG L+KA D +L I+EI R + ++VL PA+E Sbjct: 81 GESSGGELKKAIDRGVSYRQSGQDCLLVIEEIDRFTRTQQDVLVPALE 128 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 30/253 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RP+ +E VGQ V ++ I ++ H +F GP G GKTT A I+A + Sbjct: 8 REWRPQSFQELVGQEHVSRTLQNAIAYQRIA-----HAYLFCGPRGTGKTTTAKILAKAL 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNL-EPHDVLFIDE-----IHRLSPVVEEVLYPAME-D 132 + GPV L N HDVL ID + + + E+V Y E + Sbjct: 63 NC---SGHGPVRPCNDCLNCRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGN 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPPFTLIG--ATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP +I ATT + + + R QR +F Sbjct: 120 YKVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSR---CQRFDFR 176 Query: 185 Q--VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD-GT 241 + V ++ + R R + S + +AR+A G R A +L + +A + D G Sbjct: 177 RLGVNEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGD 236 Query: 242 ISADIAAQALDML 254 ++A + A A ++L Sbjct: 237 VTAILGAVADEIL 249 >UniRef50_Q4TBC8 Chromosome undetermined SCAF7151, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodontidae RepID=Q4TBC8_TETNG Length = 795 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 85/211 (40%), Gaps = 31/211 (14%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP--VLEKAGDLAAMLTNL------EPHDV 109 L+ GPPG GKT LA VA E+ + + S P V +G+ L L + Sbjct: 167 FLLHGPPGCGKTLLAQAVAGELQLPMLKVSAPEVVSGVSGESEQKLRQLFDQAVSSAPCI 226 Query: 110 LFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS 169 LFIDEI ++P E A +D + I+ + P +IGAT R SL Sbjct: 227 LFIDEIDAITPKREV----ASKDMERRIVAQMLTCMDDLNTLPAPVMVIGATNRPDSLDP 282 Query: 170 PLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGA-----LEVARRARGTPRIAN 224 LR R G R +PD +AR + G+ L+ R PRI Sbjct: 283 ALR-RAGRFDREICLGIPD------EAARLRSVWSVRPGSRRPPGLDALLHPRFPPRILK 335 Query: 225 RLLRRVRDFAEVKHD-------GTISADIAA 248 L R+++ + H G + AD+ A Sbjct: 336 TLCRKLKLSEDFDHGQLARLTPGYVGADLMA 366 >UniRef50_D2BGD4 Holliday junction DNA helicase n=3 Tax=Dehalococcoides RepID=D2BGD4_DEHSV Length = 312 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 11/187 (5%) Query: 57 HLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIH 116 H+++ GPP L KT + G G KAG L ++ EP +L IDE+ Sbjct: 123 HIMLTGPPALAKTLFLWDIEQTFGEQAIWLVGSATSKAG-LWDLVAEREPK-ILLIDEMD 180 Query: 117 RLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDL-PPFTLIGATTRAGSLTSPLRDRF 175 +++ V L ME +L A R ++D+ P ++ A+ R L+ LR RF Sbjct: 181 KMNAVDMAALLTLMEGGRL------VRAKRGRELDINNPLKVVAASNRLEKLSPELRSRF 234 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 I ++L Y + +V + +S++ A ++A R G + +R R + Sbjct: 235 AI-RKLNPYSRSEFLTVV-KGVLVRKENLSEEMAQDIASRLDGISQDVRDAIRVARLAPQ 292 Query: 236 VKHDGTI 242 V D I Sbjct: 293 VGVDKAI 299 >UniRef50_A8MDE9 AAA family ATPase, CDC48 subfamily n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MDE9_CALMQ Length = 852 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL--------EKAGDLAAMLTNLEPHDV 109 +L+FGPPG GKT LA VANE G N GP + EKA + V Sbjct: 511 ILLFGPPGTGKTLLAKAVANESGANFIAVRGPEILSKWFGESEKAIREIFKKARMAAPCV 570 Query: 110 LFIDEIHRLSP 120 +F DEI ++P Sbjct: 571 VFFDEIDAIAP 581 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGP--VLEKAGDLAAMLTNL------EPHDV 109 +L+ GPPG GKT LA VANE + +GP V + G+ A L + + Sbjct: 217 VLLIGPPGTGKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRNAPAI 276 Query: 110 LFIDEIHRLSPVVEEV 125 +FIDEI ++P EEV Sbjct: 277 IFIDEIDSIAPKREEV 292 >UniRef50_C6CS54 AAA ATPase central domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CS54_PAESJ Length = 594 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%) Query: 28 LEEYVGQPQVRSQMEIFIKA-------AKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 ++Y G P++ + + K+ G+A+ LL+ GPPG GK+ LA ++ANE Sbjct: 82 WDDYRGNPEIVENAKRIVSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYLAQVIANEAQ 141 Query: 81 VNLRTTSGPVLEK----AGDLAAM--------LTNLEPHDVLFIDEI 115 V S P + G+L M L + ++FIDE+ Sbjct: 142 VPFAYASAPSFQNMFFGVGNLRVMRIYKKARKLARMYGACIIFIDEV 188 >UniRef50_UPI0001793755 PREDICTED: similar to nuclear VCP-like n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793755 Length = 792 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 87/200 (43%), Gaps = 24/200 (12%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL---------EKAGDLAAMLTNLEPHD 108 L+ GPPG GKT LA VA E+ + L + + P L ++ L P Sbjct: 244 FLLHGPPGCGKTLLAQAVAGELKIPLISIAAPQLVVGISGESEKRVRKLFETAVKSAPC- 302 Query: 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT 168 VLFIDE+ +SP E D + I+ + ++K D +IGAT R SL Sbjct: 303 VLFIDEVDSISPHRETT----SRDMERRIVAQLLSSLDNLKDD-AKVIVIGATNRPDSLD 357 Query: 169 SPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSD---DGALEVARRARGTPRIANR 225 LR R G R +PD Q SR A +GL + D + + R + TP Sbjct: 358 PALR-RAGRFDREVCLGIPDRQ---SRRA-MLGLMCKNLRIDPTVSLDRLSELTPGYVGA 412 Query: 226 LLRRV-RDFAEVKHDGTISA 244 L+ + R+ A V + TI A Sbjct: 413 DLKSLTREAATVAANRTIEA 432 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 10/72 (13%) Query: 58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVL------EKAGDLAAMLT---NLEPHD 108 +L+ GPPG GKT LA VANE G+N + GP L E + + N +P Sbjct: 550 VLLCGPPGCGKTLLAKAVANEAGINFISIKGPELLNMYVGESERGVRQVFQRARNSQPC- 608 Query: 109 VLFIDEIHRLSP 120 V+F DEI L P Sbjct: 609 VIFFDEIDALCP 620 >UniRef50_C7H148 ATPase, AAA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H148_9FIRM Length = 411 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 15/120 (12%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA------ 76 +RP+ LE+++GQ + + A ++ + + +GP G GKTTLA I+A Sbjct: 8 VRPERLEDFIGQEHFLKKNALVYNA--IKEGRFESAVFYGPSGTGKTTLARIIAKMQDDS 65 Query: 77 ----NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 N V + + E +++ L++DEIHR + ++ L A+E+ Sbjct: 66 FIQINAADVGISELKKILAEAKDRFYGIIS---KSTYLYVDEIHRWNKSQQDSLLSALEE 122 >UniRef50_C3X6V3 ATP-dependent protease La n=2 Tax=Oxalobacter formigenes RepID=C3X6V3_OXAFO Length = 815 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 38/210 (18%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEMGVN 82 R L E++ G +V+ ++ F+ KL + LL F GPPG+GKT+L +A G Sbjct: 347 RQILDEDHYGLEKVKKRILEFLAVHKLNPEGKSPLLCFVGPPGVGKTSLGQSIARATGRK 406 Query: 83 -LRTTSGPVLEKA--------------GDLAAMLTNLEPHD-VLFIDEIHRLSPVVE--- 123 +R + G V ++A G++ + ++ V+ +DE+ +L V+ Sbjct: 407 FVRVSMGGVHDEAEIRGHRRTYIGALPGNIIQAIRRAGTNNCVMLLDEVDKLGSGVQGDP 466 Query: 124 -----EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 178 EVL PA D + ++ DL I ++ PLRDR ++ Sbjct: 467 SAALLEVLDPAQNSTFRDNYL-------AVPFDLSKVMFICTANMPDTIPGPLRDRLEMI 519 Query: 179 Q-----RLEFYQVPDLQYIVSRSARFMGLE 203 Q E Q+ L+Y++ R GL+ Sbjct: 520 QLPGYTEQEKTQIA-LRYLIRRQREENGLK 548 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruv... 409 e-113 UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mits... 396 e-109 UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruv... 394 e-108 UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruv... 393 e-108 UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruv... 387 e-106 UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruv... 382 e-105 UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruv... 380 e-104 UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruv... 379 e-104 UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruv... 377 e-103 UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruv... 373 e-102 UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruv... 372 e-102 UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruv... 370 e-101 UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonq... 367 e-100 UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruv... 366 e-100 UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruv... 364 3e-99 UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruv... 363 7e-99 UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruv... 361 2e-98 UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Plan... 360 4e-98 UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 358 1e-97 UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruv... 358 2e-97 UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruv... 356 6e-97 UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 355 1e-96 UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruv... 346 6e-94 UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cell... 346 7e-94 UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruv... 336 7e-91 UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruv... 313 8e-84 UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruv... 311 2e-83 UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruv... 311 3e-83 UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Copr... 308 1e-82 UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Myco... 307 3e-82 UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n... 305 1e-81 UniRef50_Q0W1R6 Holliday junction resolvasome, helicase subunit ... 304 3e-81 UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Myco... 296 1e-78 UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 291 3e-77 UniRef50_P75242 Holliday junction ATP-dependent DNA helicase ruv... 275 1e-72 UniRef50_Q8EWC6 Holliday junction DNA helicase n=1 Tax=Mycoplasm... 274 3e-72 UniRef50_B3H0C7 Holliday junction ATP-dependent DNA helicase Ruv... 273 6e-72 UniRef50_Q6F144 Holliday junction DNA helicase n=3 Tax=Mollicute... 264 3e-69 UniRef50_B1AJ89 Holliday junction ATP-dependent DNA helicase ruv... 261 2e-68 UniRef50_UPI00016C564A Holliday junction DNA helicase RuvB n=1 T... 225 1e-57 UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepI... 200 8e-50 UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH... 197 7e-49 UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA2... 195 2e-48 UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR 193 9e-48 UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4... 192 1e-47 UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696... 187 4e-46 UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30... 187 4e-46 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 187 5e-46 UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria Rep... 187 6e-46 UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bact... 186 9e-46 UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6B... 184 3e-45 UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillo... 183 9e-45 UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria Rep... 182 1e-44 UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax... 182 2e-44 UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacte... 181 2e-44 UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Prote... 181 3e-44 UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria... 181 4e-44 UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepI... 181 4e-44 UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria Rep... 180 5e-44 UniRef50_P0AAZ6 Replication-associated recombination protein A n... 180 6e-44 UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea s... 179 2e-43 UniRef50_C9KPY4 Replication-associated recombination protein A n... 177 4e-43 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 177 4e-43 UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyo... 177 5e-43 UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardne... 177 6e-43 UniRef50_C4Y1S6 Putative uncharacterized protein n=1 Tax=Clavisp... 177 7e-43 UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1... 176 8e-43 UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellul... 176 1e-42 UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5... 175 2e-42 UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collins... 175 2e-42 UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB 175 3e-42 UniRef50_B9WCE8 AAA family ATPase, putative n=1 Tax=Candida dubl... 175 3e-42 UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4... 174 3e-42 UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacter... 174 4e-42 UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms R... 174 4e-42 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 174 4e-42 UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopob... 174 5e-42 UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacter... 174 6e-42 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 173 7e-42 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 173 1e-41 UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacill... 172 1e-41 UniRef50_Q0EY57 ATPase n=1 Tax=Mariprofundus ferrooxydans PV-1 R... 172 2e-41 UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN 172 2e-41 UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K... 172 2e-41 UniRef50_A5GNS9 ATPase related to the helicase subunit of the Ho... 171 3e-41 UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens ... 171 3e-41 UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax... 171 3e-41 UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyc... 171 4e-41 UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endo... 171 4e-41 UniRef50_C5M4W5 Predicted protein n=1 Tax=Candida tropicalis MYA... 171 4e-41 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 171 4e-41 UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actin... 171 4e-41 UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacte... 171 4e-41 UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacter... 171 4e-41 UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodom... 170 4e-41 UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI 170 5e-41 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 170 5e-41 UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellula... 170 5e-41 UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacterio... 170 6e-41 UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Am... 170 7e-41 UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida... 170 7e-41 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 170 8e-41 UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusim... 169 1e-40 UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacter... 169 1e-40 UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacte... 169 1e-40 UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/r... 169 1e-40 UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK... 169 2e-40 UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosa... 167 4e-40 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 167 5e-40 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 167 5e-40 UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusob... 167 6e-40 UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase int... 167 6e-40 UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campyl... 166 1e-39 UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus cal... 166 1e-39 UniRef50_UPI000192574D PREDICTED: similar to Werner helicase int... 166 1e-39 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 165 1e-39 UniRef50_Q043K3 Helicase subunit of the Holliday junction resolv... 164 4e-39 UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q... 164 5e-39 UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv... 164 5e-39 UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6... 163 9e-39 UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase s... 163 1e-38 UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desul... 163 1e-38 UniRef50_A9ULW2 Putative uncharacterized protein n=1 Tax=Xenopus... 162 1e-38 UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Ta... 162 1e-38 UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 T... 162 2e-38 UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacte... 162 2e-38 UniRef50_UPI00015B415D PREDICTED: similar to werner helicase int... 162 2e-38 UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Therm... 162 2e-38 UniRef50_A5DW03 Putative uncharacterized protein n=1 Tax=Loddero... 162 2e-38 UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriob... 162 2e-38 UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase ... 162 2e-38 UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria Rep... 161 3e-38 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 161 3e-38 UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 R... 160 4e-38 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 160 4e-38 UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba Re... 160 7e-38 UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharo... 159 1e-37 UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-lik... 159 1e-37 UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrob... 159 1e-37 UniRef50_O34528 Uncharacterized AAA domain-containing protein yr... 159 2e-37 UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepI... 157 5e-37 UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilag... 157 6e-37 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 157 8e-37 UniRef50_A3LTW2 Replication factor ATPase n=1 Tax=Pichia stipiti... 156 8e-37 UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacte... 155 2e-36 UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 ... 155 2e-36 UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, puta... 155 2e-36 UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A... 155 3e-36 UniRef50_B2GIA8 Putative uncharacterized protein n=2 Tax=Bacteri... 154 4e-36 UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycet... 153 7e-36 UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera ... 153 9e-36 UniRef50_C4Y4G1 Putative uncharacterized protein n=1 Tax=Clavisp... 153 1e-35 UniRef50_B3H0C6 Holliday junction ATP-dependent DNA helicase Ruv... 152 1e-35 UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteri... 152 1e-35 UniRef50_A2QW62 Function: WHIP of M. musculus is involved in agi... 152 2e-35 UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria Re... 152 2e-35 UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB 151 3e-35 UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 T... 151 4e-35 UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1... 150 5e-35 UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase int... 150 9e-35 UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gem... 150 9e-35 UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 T... 149 1e-34 UniRef50_C4YKF6 Putative uncharacterized protein n=2 Tax=Candida... 149 1e-34 UniRef50_A5DKE6 Putative uncharacterized protein n=2 Tax=Pichia ... 148 2e-34 UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonprote... 148 2e-34 UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID... 147 4e-34 Sequences not found previously or not previously below threshold: UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 T... 169 2e-40 UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Ta... 168 2e-40 UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Ta... 167 6e-40 UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=S... 164 3e-39 UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 T... 164 6e-39 UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 162 2e-38 UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Ta... 160 7e-38 UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 T... 159 1e-37 UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 T... 158 2e-37 UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 T... 158 2e-37 UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 158 3e-37 UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and ta... 158 3e-37 UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepI... 158 3e-37 UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Ta... 157 4e-37 UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 T... 157 5e-37 UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 157 5e-37 UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Ta... 157 6e-37 UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdema... 156 9e-37 UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 T... 156 1e-36 UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 T... 156 1e-36 UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta R... 156 1e-36 UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 T... 155 2e-36 UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 T... 155 2e-36 UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=L... 155 2e-36 UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bac... 155 2e-36 UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 T... 155 2e-36 UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 T... 155 3e-36 UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Ba... 155 3e-36 UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Ta... 155 3e-36 UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Mic... 154 4e-36 UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonel... 154 4e-36 UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Ba... 154 4e-36 UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clo... 153 5e-36 UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteri... 153 6e-36 UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 T... 153 6e-36 UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 T... 153 7e-36 UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 153 7e-36 UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Ba... 153 8e-36 UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacill... 153 9e-36 UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 T... 153 9e-36 UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 T... 153 1e-35 UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subuni... 153 1e-35 UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 T... 153 1e-35 UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 T... 153 1e-35 UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organi... 153 1e-35 UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bactero... 152 1e-35 UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 152 1e-35 UniRef50_C4R299 Protein with DNA-dependent ATPase and ssDNA anne... 152 2e-35 UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 ... 152 2e-35 UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 T... 152 2e-35 UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n... 152 2e-35 UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacte... 152 2e-35 UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=roo... 152 3e-35 UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 T... 151 3e-35 UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lys... 151 3e-35 UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 T... 151 3e-35 UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79... 151 3e-35 UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus Rep... 151 3e-35 UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 T... 150 5e-35 UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Ta... 150 5e-35 UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=P... 150 5e-35 UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 T... 150 6e-35 UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 T... 150 8e-35 UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Sl... 149 1e-34 UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2... 149 1e-34 UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax... 149 1e-34 UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=St... 149 1e-34 UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 T... 149 2e-34 UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Ta... 148 2e-34 UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostri... 148 2e-34 UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau... 148 2e-34 UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Ba... 148 2e-34 UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacte... 148 2e-34 UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Ta... 148 2e-34 UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 T... 148 3e-34 UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 T... 148 3e-34 UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax... 148 3e-34 UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 T... 148 3e-34 UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 T... 148 3e-34 UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 T... 148 4e-34 UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Ba... 147 4e-34 UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidob... 147 4e-34 UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bac... 147 4e-34 UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 T... 147 5e-34 >UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Bacteria RepID=RUVB_DELAS Length = 361 Score = 409 bits (1051), Expect = e-113, Method: Composition-based stats. Identities = 231/329 (70%), Positives = 278/329 (84%), Gaps = 1/329 (0%) Query: 6 RLISAG-TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 R+ISA + E+ +RA+RPKLL+EYVGQ + R Q+EIFI AA+ R +ALDH+L+FGPP Sbjct: 28 RMISAAPVSRGEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPP 87 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTL++I+A E+GVNLR TSGPVLEK DLAA+LTNLE +DVLFIDEIHRLSPVVEE Sbjct: 88 GLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEE 147 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPA+EDYQ+DIMIGEGPAARSIK+DL PFTL+GATTRAG LT+PLRDRFGIV RLEFY Sbjct: 148 ILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 207 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +L IV RSA + + D+GA E+ARR+RGTPRIANRLLRRVRD+A+V+ DG+I+ Sbjct: 208 TAEELARIVRRSAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITR 267 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 ++A +AL ML+VD +GFD MDRKLL AV+ +F GGPVGLDN+AA+IGEE TIEDV+EPY Sbjct: 268 ELADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPY 327 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPP 333 LIQQGFLQRTPRGRMAT A+ H G+ P Sbjct: 328 LIQQGFLQRTPRGRMATQAAYRHLGLPVP 356 >UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK53_9FIRM Length = 339 Score = 396 bits (1017), Expect = e-109, Method: Composition-based stats. Identities = 196/314 (62%), Positives = 255/314 (81%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RP+ L EY+GQ +V++ + IFI+AA RG+ALDH+L++GPPGLGKTTLA I+ANE+GV Sbjct: 26 SLRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGPPGLGKTTLAGIIANELGV 85 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N R TSGP +E++GDLAA+LTNL+ HDVLFIDEIHRLS VEEVLY AMED+ LDI+IG+ Sbjct: 86 NFRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGK 145 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 GP+ARSI++D+ PFTLIGATT+AG+L +PLRDRFG++ RLE+Y L +I+ R+A + Sbjct: 146 GPSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEYYTPDALVHIIKRAAEILD 205 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + + D+GALE+ARR+RGTPR+ANRLL+RVRD A+++ GTI+ +IA +AL ML VD G Sbjct: 206 IAIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTITNEIADKALRMLEVDKAGL 265 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D+ DR++L +I+KF GGPVGLD LAAAI E R+TIEDV EPYLIQ GF+ RTPRGR+ T Sbjct: 266 DHTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEPYLIQLGFINRTPRGRIVT 325 Query: 322 TRAWNHFGITPPEM 335 + H GI PE Sbjct: 326 EAGYRHLGIPYPEK 339 >UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruvB n=1359 Tax=root RepID=RUVB_HELMI Length = 370 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 191/330 (57%), Positives = 258/330 (78%) Query: 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 +R++++ + + ++RP+ L EY+GQ +++ + +FI+AA R + LDH+L++GPP Sbjct: 3 ERMMTSAKRPEDRETEWSLRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYGPP 62 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTLA I+A E+GV LR TSGP +E+ GDLAA+LTNL+P DVLFIDEIHRL+ VEE Sbjct: 63 GLGKTTLAQIIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAVEE 122 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 VLYPAMED+ LDI+IG+GPAARSI+IDLP FTL+GATTRAG LTSPLRDRFG++ RLE+Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLEYY 182 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + +L++I+ R+A +G+ +GA E+A R+RGTPRIANRLL+RVRD+A+V DG ++ Sbjct: 183 RPDELEFIILRAATILGVTAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVVTG 242 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 ++A +AL L VD G D D++LL A+I KF GGPVG++ LAA++GE +T+EDV+EPY Sbjct: 243 EVAREALRRLEVDPRGLDTTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVEPY 302 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 L+Q GFL RTPRGRMAT A H G+ P Sbjct: 303 LMQLGFLNRTPRGRMATIAACAHLGVPVPA 332 >UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruvB n=275 Tax=cellular organisms RepID=RUVB_ACIBL Length = 360 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 185/333 (55%), Positives = 253/333 (75%) Query: 3 EADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFG 62 + +RL+SA + + +RP+ L E++GQP+V+ + + I+AA+ RG+ALDH+L++G Sbjct: 23 QRERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYG 82 Query: 63 PPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 PPGLGKTTLANI+ANEM + TSGP L+ GDL A+LTN+ VLFIDE+HRL P + Sbjct: 83 PPGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPAL 142 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLE 182 EE+LY A+EDY+LDI+IG+GP+AR+ ID+ PFTL+ ATTRAG L++PLR RFGIV RLE Sbjct: 143 EELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRLE 202 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 FY DL+ I+ RSA + +E+ + GA E+A R RGTPRIANRLLRRVRD+A+V+ G I Sbjct: 203 FYTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGKI 262 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + A +AL+ML VD GFD +DR+L+L +I+K+ GGPVGL+ LAA++ EE + IE++ E Sbjct: 263 DRETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIYE 322 Query: 303 PYLIQQGFLQRTPRGRMATTRAWNHFGITPPEM 335 P+LIQ GFL RTPRGR+AT A+ +F + PP+ Sbjct: 323 PFLIQLGFLDRTPRGRVATHLAYEYFKMKPPKK 355 >UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruvB n=42 Tax=Bacteria RepID=RUVB_THEEB Length = 363 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 183/330 (55%), Positives = 246/330 (74%), Gaps = 3/330 (0%) Query: 8 ISAGTTLPED---VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 + + PE+ +A+ ++RP L++Y+GQ +++ + I I+AAK R + LDHLL++GPP Sbjct: 20 VLSNQPTPEEQHSLAEDSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPP 79 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTT+A I+A EMGVN + TS P LE+ D+ +L NL+ D+LFIDEIHRLS + EE Sbjct: 80 GLGKTTIALILAAEMGVNCKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTEE 139 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPAMED+ LD+ +G+ AR ++ L FTL+GATTRAG+LTSPLRDRFG+VQRL FY Sbjct: 140 LLYPAMEDFYLDLTVGKQQTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRFY 199 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +LQ IV R A + ++ + ALE+ RR+RGTPRIA RLL+RVRD+A VKHDG I+ Sbjct: 200 HPEELQQIVQRGAALLQTPITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRITL 259 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 D+A AL++L+VD G D DR+LL +I+ + GGPVG++ LAAA GE+ +TIE+V EPY Sbjct: 260 DVARAALELLHVDPAGLDGSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEPY 319 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 L+Q G+LQRTPRGR+AT RAW H G T PE Sbjct: 320 LLQMGYLQRTPRGRVATPRAWQHLGYTAPE 349 >UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruvB n=5 Tax=Bacteria RepID=RUVB_BRAHW Length = 346 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 168/324 (51%), Positives = 237/324 (73%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 I+ D + IRP+ ++++GQ ++S++++FI +AK R +LDH+L +GPPGLG Sbjct: 6 ITNAEENSYDKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYGPPGLG 65 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTTLA I+ANEMG N++ TS P++E+ GDLA++LT L D+LFIDEIHRL VVEEVLY Sbjct: 66 KTTLAQIIANEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVVEEVLY 125 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 AMED+ +DI +GEG +A+S ++ LP FTLIGATTR+G L++PL DRFGIV+RLEFY Sbjct: 126 SAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLEFYTNE 185 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 DL IV RS+ F+ + ++D+ A+ +A R+RGTPRI NRLLRRV DFA V I A Sbjct: 186 DLANIVKRSSEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKIDEKFA 245 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQ 307 +L+ L +D GF+ +D+ L +I + GGPVG+D L+ ++ E+ ETIEDV+EPYLIQ Sbjct: 246 CDSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIEPYLIQ 305 Query: 308 QGFLQRTPRGRMATTRAWNHFGIT 331 GF++RTP+GR+AT +A+ + ++ Sbjct: 306 CGFIKRTPKGRVATNKAYGYLNLS 329 >UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruvB n=77 Tax=Bacteria RepID=RUVB_TRIEI Length = 386 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 176/327 (53%), Positives = 246/327 (75%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 ++ ++ + IRP+ L+EY+GQ ++ + I I AAK R ++LDHLL++GPPGLG Sbjct: 53 EASAAEKSDNQNEEKIRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLG 112 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTT++ I+A EM VN + T+ P +EK D+ +L L+ D+LFIDEIHRLS + EE+LY Sbjct: 113 KTTMSLILAAEMEVNCKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILY 172 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 PAMED++LDI +G+G ++++ I L PFTL+GATT+ GSLTSPLRDRFGI+QRL FY+V Sbjct: 173 PAMEDFRLDITVGQGKSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVD 232 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 +L I+ R+A+ + ++++DGA EVARR+RGTPRIANRLLRRVRD++EVK I+A+IA Sbjct: 233 ELSLIIIRAAKVLNTDITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIA 292 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQ 307 +AL++ NVD G D+ DR LL +I+ + GGP GL+ +AAA GE+ +TIE+V EPYL+Q Sbjct: 293 GEALELFNVDPLGLDWTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQ 352 Query: 308 QGFLQRTPRGRMATTRAWNHFGITPPE 334 GF+QRTPRGR+ T W H G +PP+ Sbjct: 353 IGFMQRTPRGRVVTAAGWRHLGFSPPD 379 >UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Proteobacteria RepID=RUVB_RICRS Length = 342 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 174/325 (53%), Positives = 239/325 (73%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 E+ + IRP L+E+VGQ Q++ + +FIKAAK R + LDH L +GPPGLGKTT Sbjct: 6 SPEKSENDQELPIRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTT 65 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 LA I++NE+G N ++TSGP + K DLAA+LTNLE +DVLFIDEIHRL+ VEEVLYPAM Sbjct: 66 LAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVLYPAM 125 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 ED++LDI+IGEG AARS+KI LP FTLIGATTR G L++PLRDRFGI RL FY +L+ Sbjct: 126 EDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELK 185 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 +++R+++ + ++++D G+ E+A+R+RGTPRIA RLLRR+RDFA V+ + +++ Sbjct: 186 KVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEVSDFG 245 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 L+ L VD G D D + L + D + GGPVG++ +AAA+ E+R+ +E+ +EPYLIQ G Sbjct: 246 LNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQIGL 305 Query: 311 LQRTPRGRMATTRAWNHFGITPPEM 335 LQRTPRGR+ T A+ H ++ P Sbjct: 306 LQRTPRGRVITIAAFEHLKMSVPNQ 330 >UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_FERNB Length = 347 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 175/328 (53%), Positives = 247/328 (75%), Gaps = 3/328 (0%) Query: 4 ADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGP 63 ++R++S T + ++RPK L EY+GQ ++ ++++ I+A+K+RG+ LDH+L+ GP Sbjct: 9 SERIVSPERTGYDS---YSLRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGP 65 Query: 64 PGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 PGLGKTTLA I+ANE+ N+ TSGP+LEK GDLAA+LTNLE DVLFIDEIHR++ VE Sbjct: 66 PGLGKTTLATIIANELNANIHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVE 125 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 E+LY AMED+Q+DIMIG+GPAARSI+++L PFTLIGATTR+G LTSPLR+RFG++ + F Sbjct: 126 EILYSAMEDFQVDIMIGKGPAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNF 185 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 Y +L+ I++R+A MG + DD AL +A+R+RGTPRIA RLL+RVRD + V+ I+ Sbjct: 186 YTQEELKMIITRAAEVMGTLIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENIT 245 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 +I + + +L VD G D MDRK+L +I+ + GGPVGL +LAA++G +TI +V EP Sbjct: 246 LNIVEEVMRLLGVDEFGLDEMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEP 305 Query: 304 YLIQQGFLQRTPRGRMATTRAWNHFGIT 331 +L+Q GF+ R RGR+AT +A+ + G Sbjct: 306 FLVQSGFIARGARGRIATEKAYKYLGYN 333 >UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Proteobacteria RepID=RUVB_RHOCS Length = 362 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 197/320 (61%), Positives = 251/320 (78%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D A+ +IRP L E++GQ QVR + +FI+AA+ R +ALDH+L+FGPPGLGKTTLA IVA Sbjct: 19 DAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPGLGKTTLAQIVA 78 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 E+ V R TSGPV+ KAGDLAA+LTNL+PHDVLFIDEIHRLSP VEE+LYPAMED+QLD Sbjct: 79 KELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEILYPAMEDFQLD 138 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 ++IGEGPAARS++IDLPPFTL+GATTR+G +T PLR+RFGI R++FY+ +LQ IV+R Sbjct: 139 LIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYEPEELQLIVARG 198 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 AR +G+E++ +GALE+ARR+RGTPR+A RLLRRVRD V + A A AL L V Sbjct: 199 ARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAAAAGGALTRLEV 258 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D GFD MDR+ L + D + GGPVG++ L AA+GE+R+ +E+ +EPYLIQQG LQRTPR Sbjct: 259 DRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYLIQQGLLQRTPR 318 Query: 317 GRMATTRAWNHFGITPPEMP 336 GR+ T + + G+ PP P Sbjct: 319 GRLLTDSGYRYLGLPPPATP 338 >UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruvB n=141 Tax=Bacteria RepID=RUVB_ACIC1 Length = 367 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 184/327 (56%), Positives = 240/327 (73%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 LI A E + A+RP+ L+E+VGQ +VR Q+ + + AK RG DH+L+ GPPGL Sbjct: 19 LIDAHAESDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGPPGL 78 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVL 126 GKTTLA IVA E+ +R TSGP ++ AGDLAA+LT L +VLF+DEIHR++ EE+L Sbjct: 79 GKTTLAMIVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAEEML 138 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 Y AMED+++D+++G+GP A I ++L PFTLIGATTR G L PLRDRFG RL+FY+ Sbjct: 139 YLAMEDFRVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDFYEP 198 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 DL+ IV RSAR + + ++ DGA E+ARR+RGTPRIANRLLRRVRD+AEV+ DG I+ ++ Sbjct: 199 ADLERIVHRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVITCEV 258 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A AL + VD G D +DR +L A++ +F GGPVGL +A A+GEE ET+E+V EP+L Sbjct: 259 AQAALAVYEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEPFLF 318 Query: 307 QQGFLQRTPRGRMATTRAWNHFGITPP 333 + GFL RTPRGRMAT AW H GITPP Sbjct: 319 RAGFLIRTPRGRMATAAAWRHLGITPP 345 >UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Thermotoga lettingae TMO RepID=RUVB_THELT Length = 343 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 166/315 (52%), Positives = 235/315 (74%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D ++RP LE+Y+GQ +V+ ++ I +KAAKLR + LDH+L GPPGLGKTTLA ++A Sbjct: 11 DAILVSLRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTTLAFVIA 70 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 EMG N+ TSGPVLE+ GD+AA+L+++E D+LFIDEIHR++ VEEV Y A+EDY++D Sbjct: 71 KEMGKNIHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSALEDYKVD 130 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 IMIG+GP ARSI+I L PFTL+GATTR+G L+SPLR+RFG++ L+FY V +L I+ R+ Sbjct: 131 IMIGKGPTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELMEIIKRA 190 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 + M +E+ + A +A RARGTPRIA RLL+RVRD A ++ + I + + + +D+L + Sbjct: 191 CKIMNIEIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKTMDILEI 250 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D G D MDRK+L +I+ + GGPVG++ LAA + E +T++++ EPYL+QQG + RTPR Sbjct: 251 DKLGLDEMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGLIIRTPR 310 Query: 317 GRMATTRAWNHFGIT 331 GR+AT A+ H G Sbjct: 311 GRVATGIAYEHLGYP 325 >UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7E4_9BACT Length = 347 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 169/323 (52%), Positives = 236/323 (73%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 T LP + +RP L E+ GQ +++ ++ I+++AA+LRG+ LDH L +GPPGLGKTTL Sbjct: 12 TGLPAGDEEGGLRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTL 71 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + I+A+EMG +LR T+GP LEK GDLAA+LT+L+ DVLFIDEIHR+S EEVLY AME Sbjct: 72 SGIIAHEMGGSLRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAME 131 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQY 191 D+ + +++G+GP AR++ + +P FTL+GATTR G L+SPLR RFGIV++L Y +L Sbjct: 132 DFSIHLIVGKGPLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQ 191 Query: 192 IVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQAL 251 I+ R A + + S +G +ARR+RGTPR+A RLLRRVRD A+V I + +QA+ Sbjct: 192 ILQRGAGLLNVSASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAM 251 Query: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311 DML +D GF+ DR+++ V++ F GGPVGL +AAA+ EE +TIED+ EPYLIQQG + Sbjct: 252 DMLGLDDRGFNAGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMI 311 Query: 312 QRTPRGRMATTRAWNHFGITPPE 334 +RTPRGR AT +A+ + G+ P+ Sbjct: 312 ERTPRGRKATEKAYEYLGLPVPQ 334 >UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruvB n=19 Tax=Bacteria RepID=RUVB_ARCB4 Length = 345 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 168/323 (52%), Positives = 242/323 (74%), Gaps = 1/323 (0%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 + ED + ++RP ++Y+GQ +++ + +FI A+K R +ALDH+L +GPPGLGKTT Sbjct: 9 SVSFEEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGLGKTT 68 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 L+ +++NEM N++ T+GP++EK+GDLAA+LTNLE D+LFIDEIHRLSP VEE+LYPAM Sbjct: 69 LSYLISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEILYPAM 128 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 EDY+LDI+IG GPAA+++KIDLP FTLIGATTRAG L++PLR+RFG+ R++FY +L Sbjct: 129 EDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTEIELA 188 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 I+ +++ +G DD +LE+++R+RGTPR+A RLLRRVRDF+EV+++ +I A Sbjct: 189 KIIQKASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSIHLQRCKYA 248 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 LD L V+ GFD MD LL +I G P+GL +AAA+ E+ TIED +EPYL+ G+ Sbjct: 249 LDELGVNESGFDEMDINLLELLISN-RGKPMGLSTIAAALSEDEGTIEDAIEPYLLANGY 307 Query: 311 LQRTPRGRMATTRAWNHFGITPP 333 ++RT RGR+A+ + + F ++ P Sbjct: 308 IERTARGRVASVKTYEMFRLSYP 330 >UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_DESAH Length = 354 Score = 364 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 161/327 (49%), Positives = 221/327 (67%) Query: 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 + + + + + ++RP E YVGQ ++I I+AAK+RGD LDH+L+ GPP Sbjct: 22 ELITPSSQPVDDSSEVVSLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGPP 81 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTT+++I+ANEMG L TSGP LEK GDL MLTNL D+LFIDEIHRL VEE Sbjct: 82 GLGKTTISHIIANEMGGTLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVEE 141 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 LYPAMED+ +D + +G ARS + L F L+GATTR G ++SPLRDRFGI + L+FY Sbjct: 142 FLYPAMEDFAVDFVFDKGLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDFY 201 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +L I+ RSA + + + D ALE+ARR+RGTPRIANRLL+RVRDF+ V+ G ++ Sbjct: 202 TDEELVTIIRRSAGLLNVVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVTQ 261 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 A AL + +D++G +DR L +I+ + GGPVG++ +AA + EE +T+ DV+EPY Sbjct: 262 KSVAAALSLEGIDSKGLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEPY 321 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGIT 331 L++ G + RT GR A+ A+ H GI Sbjct: 322 LLKIGMVMRTSAGRRASVGAYEHLGIK 348 >UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruvB n=8 Tax=Chlamydia RepID=RUVB_CHLT2 Length = 334 Score = 363 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 156/316 (49%), Positives = 221/316 (69%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 D ++RPK L E+ GQ Q++ ++++F++AA R + H L +GPPGLGKT+LA+I+AN + Sbjct: 15 DFSLRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTI 74 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 G L SGP L K DL +LT L+ D+ FIDEIHR+ EE LYPAMED+++DI + Sbjct: 75 GKGLVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITL 134 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARF 199 GP ARS+++DL PFTL+GATTRAG L+ PLR RF R+++Y DL I+SRS++ Sbjct: 135 DSGPGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQL 194 Query: 200 MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAE 259 + +E + + LE+ARRARGTPR+AN LLR VRDFA+++ I++ +A +AL ML +D Sbjct: 195 LAIEANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNL 254 Query: 260 GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM 319 G + +D KLL +ID + GGPVG+ LA A+GE+ T+ED+ EP+LI +G +QRT RGR+ Sbjct: 255 GLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRV 314 Query: 320 ATTRAWNHFGITPPEM 335 AT A+ H P + Sbjct: 315 ATPLAYEHLNRNPKDR 330 >UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Desulfobacteraceae RepID=RUVB_DESOH Length = 343 Score = 361 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 160/321 (49%), Positives = 213/321 (66%), Gaps = 2/321 (0%) Query: 13 TLPEDVADR--AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 ED D ++RP E+YVGQ + + I I AAK R + L+H+L GPPGLGKTT Sbjct: 20 ETEEDTGDDLFSLRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFHGPPGLGKTT 79 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 LA+I+A EMG +L TSGP LEK GDL MLT+L+ D+LF+DEIHRL EE LYPAM Sbjct: 80 LAHIIAAEMGTSLTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRTTEEFLYPAM 139 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 ED+ +D + +G AR + L F L+GATTR G L++PLRDRFGI ++ +FY DL Sbjct: 140 EDFAVDFVFDKGIHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKFDFYSRQDLA 199 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 IVSRSA MGL + + +E+ARR+RGTPRI NRLL+RVRD+ +V+H G I+ A Sbjct: 200 RIVSRSAALMGLTIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGVITVSAIDDA 259 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 L + VD +G +DR L +I + GGPVG++ + A + EE +T+ DV+EP+L+ +G Sbjct: 260 LALEGVDEKGLTGLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVVEPFLLAEGL 319 Query: 311 LQRTPRGRMATTRAWNHFGIT 331 LQRT GR AT A+ H G+ Sbjct: 320 LQRTSSGRKATEAAYRHLGVQ 340 >UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Planctomycetaceae RepID=D2R652_9PLAN Length = 352 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 159/319 (49%), Positives = 213/319 (66%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 +PE DR +RP+ + + VGQ +V ++ I + AA+ R D L H+L GPPGLGKTT Sbjct: 29 SAEIPEPEEDRDLRPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDGPPGLGKTT 88 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 AN + E+ V L T+SGP L+ DL LTNLEP+ VLFIDEIHR+ VEE LY AM Sbjct: 89 FANCIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPVEEYLYTAM 148 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 ED++LDI++GEG AR+I + L PFTLIGATTRAG L+SPLRDRF + + L FY V +L Sbjct: 149 EDFRLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLGFYTVDELT 208 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 IV RSA + ++ D A+E+ARR+RGTPRIAN LR VRD+AE K G I+ +A A Sbjct: 209 EIVRRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQITVAVAQAA 268 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 L M +D G D DR L ++ F GGPVG+D++A + +T+ D +EP+L++ Sbjct: 269 LAMSGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVEPFLLRCEL 328 Query: 311 LQRTPRGRMATTRAWNHFG 329 + R+PRGRM T++A+ H Sbjct: 329 IVRSPRGRMLTSKAFEHLK 347 >UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFL1_DICT6 Length = 332 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 148/313 (47%), Positives = 215/313 (68%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D A+RPK L E++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 13 EPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLALII 72 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P ++K+GDL A+LT +E V+FIDEIHRLSP +EE+LY A+ED + Sbjct: 73 AEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALEDGSI 132 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + + LPPFTLIGATTR L++PLRDRFG + L+FY ++ I+ R Sbjct: 133 SIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKIIER 192 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL +S + EVA+R+RG PRIANR+L+R++D+ +++ + I + L+++ Sbjct: 193 SQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLELIG 252 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D G D +DRK+L + DKF GGPVGL LAA + E ETIE + EPYL++ GF+QRT Sbjct: 253 IDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQRTS 312 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 313 RGRVITPLGLAHI 325 >UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Spirochaetaceae RepID=RUVB_BORHD Length = 352 Score = 358 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 153/323 (47%), Positives = 225/323 (69%) Query: 3 EADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFG 62 E +L+++ D + +RPK L ++ GQ ++ + +FIKA++ R +ALDH+ + G Sbjct: 5 EGSKLLNSDKNFLYDRNESELRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFLSG 64 Query: 63 PPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 PPGLGKTTLA+I+A EM ++ TS P L+K D+ +LT L+ +LFIDE+HRL PV+ Sbjct: 65 PPGLGKTTLASIIAVEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKPVI 124 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLE 182 EE+LY AMEDY++D +IG+GPAAR++++ +P FTLIGATT+ G + SPL RFGIV R E Sbjct: 125 EEMLYIAMEDYKIDWIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSRFE 184 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 Y +L I+ R++ + ++ D A +A+ +RGTPR+ANRLLRR+RDFA+V I Sbjct: 185 LYSEDELVKIIQRNSIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYDLI 244 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + +I + L+ML +D EG D DR +L ++I KF GGPVG++ LA ++GE +++ED E Sbjct: 245 TENIVSDGLEMLKIDHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYE 304 Query: 303 PYLIQQGFLQRTPRGRMATTRAW 325 PYLI +G ++RT RGR AT A+ Sbjct: 305 PYLILKGLIERTSRGRKATDFAY 327 >UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=canis group RepID=RUVB_EHRCJ Length = 329 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 166/323 (51%), Positives = 233/323 (72%), Gaps = 3/323 (0%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 I T ED + +IRP LL+E++GQ V + ++IFI AA R + +DH+L++GPPGLG Sbjct: 4 ILQSTECLEDQQNVSIRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGLG 63 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTTLA+I+A E+ VN R+T+GP+L KAGDLAA+LTNL+ D+LFIDEIHRL+ +EE+LY Sbjct: 64 KTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEILY 123 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 AMED+ LDI++GEG AR++++DLP FTL+GATTR G L++PLRDRFGI LEFY Sbjct: 124 SAMEDFCLDIIVGEGCGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYSTE 183 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV-KHDGTISADI 246 +L ++ R+A+ + ++SD GA E++ RARGTPRIA RLLRR+RDF EV +H+ TI+ Sbjct: 184 ELIKVIQRAAKVIKTDISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITDTF 243 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A +AL L +D G D D + L + D P G+D +++ + E+ IE+ +EPYLI Sbjct: 244 ADKALLRLGIDKLGLDRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPYLI 301 Query: 307 QQGFLQRTPRGRMATTRAWNHFG 329 + F+QRTPRGR+ T +A ++ Sbjct: 302 KINFIQRTPRGRVITQKAISYLK 324 >UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2P1_DICTD Length = 334 Score = 355 bits (911), Expect = 1e-96, Method: Composition-based stats. Identities = 145/313 (46%), Positives = 219/313 (69%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D +RPK L +++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 15 EPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLALII 74 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P L+K+GDL A+LT++E ++FIDEIHRL+P +EE+LY A+ED + Sbjct: 75 AEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALEDRSV 134 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + I LPPFTL+GATTR L+SPLRDRFG + L+FY ++ I+ R Sbjct: 135 SIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKIIER 194 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL + + +E+A+R+RG PRIANR+L+R++D+ ++K + I+ + + L+++ Sbjct: 195 SQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLELIG 254 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D +G D +DRK+L A+ DKF GGPVGL LAA + E +TIE + EPYL++ GF+QRT Sbjct: 255 IDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQRTS 314 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 315 RGRIITPLGLAHI 327 >UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruvB n=9 Tax=Bacteria RepID=RUVB_LEPBL Length = 341 Score = 346 bits (888), Expect = 6e-94, Method: Composition-based stats. Identities = 150/308 (48%), Positives = 225/308 (73%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP LL E++GQ +V + + ++++AAK R ALDH+LI GPPGLGKTTLA IV+NE+G Sbjct: 19 LRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELGTR 78 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 L TS PV+ K DLA +LT++ +++LFIDEIH L +EE+LYPAME+Y +D++IGEG Sbjct: 79 LTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIGEG 138 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 A+ ++I L PFTL+GATTR+G ++ PL+ RFGI RL++Y +++ IV RS+R +G+ Sbjct: 139 VTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRILGV 198 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 ++ DD ALE+ +R+R TPRIAN LL+R+RDF+EV+ + ++ + +A + + +D G D Sbjct: 199 KIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLGLD 258 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 MDR++L +ID++ GGPVGL +A +GEE +TIED E ++++ G + RTP GR+AT Sbjct: 259 GMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVATE 318 Query: 323 RAWNHFGI 330 +A+ Sbjct: 319 KAYRQLKR 326 >UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cellular organisms RepID=B1X4N3_PAUCH Length = 356 Score = 346 bits (887), Expect = 7e-94, Method: Composition-based stats. Identities = 149/312 (47%), Positives = 217/312 (69%), Gaps = 1/312 (0%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 ++RPK L +Y+GQ +++ + I IKAA + +DH+L++GP GLGKTT+A ++A E+GV Sbjct: 45 SLRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTIALVLAAELGV 104 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 R S P +E+ D+ +L NLEP++VLFIDEIHRL+ + EE+LY AMED++LDI +G+ Sbjct: 105 PCRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAMEDFRLDISVGK 164 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 AR I + PFTL+GATT AG+L+ LRDRFG+VQRL Y + DL I+ R+A + Sbjct: 165 SRVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCNIIKRTANILL 224 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK-HDGTISADIAAQALDMLNVDAEG 260 L + + LE+A+R RGTPRIANRLLRR+RD ++ +D I+ ++A + L + VD G Sbjct: 225 LTLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEVLSLHQVDNRG 284 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 D DR++L +I+ + GGPVGL +AA++GE+ +E +EP+L+Q GFL+RTPRGR+ Sbjct: 285 LDANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGFLKRTPRGRIV 344 Query: 321 TTRAWNHFGITP 332 T + H G Sbjct: 345 TLEGYKHLGWPV 356 >UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Rhodopirellula baltica RepID=RUVB_RHOBA Length = 366 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 142/320 (44%), Positives = 202/320 (63%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D +RP+ + E VGQ V ++ I I AA++RG+ L H+L GPPGLGKTT A ++ Sbjct: 45 PDPDVTLRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIP 104 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 +EM ++ +G L+ DL LTN+ VLFIDEIHR+ +EE LY AMED+++D Sbjct: 105 SEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRID 164 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 I++GEG AR++ + L PFTLIGATTRAG LT+PLRDRF I + L +Y +L IV R+ Sbjct: 165 IVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRN 224 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 ++ + +E+ A +A R+R TPR+AN L VRD+A+ K G + A + ALDM+ + Sbjct: 225 SKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGI 284 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D G D DR L ++ F GGP GLD +A + +T+ED +EP+L++ L RT R Sbjct: 285 DHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRR 344 Query: 317 GRMATTRAWNHFGITPPEMP 336 GR+AT +A+ H P+ P Sbjct: 345 GRLATPKAFEHMKRQMPDRP 364 >UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruvB n=7 Tax=Prochlorococcus marinus RepID=RUVB_PROM0 Length = 352 Score = 313 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 137/306 (44%), Positives = 210/306 (68%), Gaps = 2/306 (0%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP L+E++GQ Q++S + I I A+ R + L+H+L++G PGLGKTTLA ++A+E+ Sbjct: 41 RPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQPGLGKTTLAFLIAHELNTKC 100 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + + P +E+ D+ +L L+ +VLFIDEIHRL+ + EE+LY AMED++LD+ +G Sbjct: 101 KIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANK 160 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 R I+LP FTLIGATT+ S+++PLRDRFGI Q++EFY +L+ I+ +R + L Sbjct: 161 GTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYNYDELKQILLNFSRLINLN 220 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAE-VKHDGTISADIAAQALDMLNVDAEGFD 262 + D+ + ++A+ +RGTPRIA RLLRRVRD+A+ V TIS ++ +AL+ +D +G D Sbjct: 221 LDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNLIKKALNSYQIDDKGLD 280 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 +DR L + I++ P+GLD++AA +G++ +E V+EPYLI+ GFL RTPRGR+ T Sbjct: 281 SLDRHYL-SFINQNNNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTRTPRGRLLTA 339 Query: 323 RAWNHF 328 + Sbjct: 340 LGKKYI 345 >UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Mycoplasma RepID=RUVB_MYCH2 Length = 318 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 194/310 (62%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 + IRP E ++GQ ++ ++I I +++ R +LDH+L +GPPG GKTTLANIVAN Sbjct: 3 ENLEIRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIVANV 62 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 + ++ GP+LEK D+ A+L N+ P ++FIDEIH ++ +EE+LY AME++ +D+ Sbjct: 63 LEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEFVIDLQ 122 Query: 139 IGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR 198 IG + +++ LP FTLIGA+T+ +++PL++RFG V ++ Y + D+ I+ S+ Sbjct: 123 IGVDGERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQIIRNSSA 182 Query: 199 FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDA 258 + L+M+ + +A + TPRIAN LL+R+RDFA V + I DI + D + + Sbjct: 183 VLKLKMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDSIGIYN 242 Query: 259 EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGR 318 +G ++ + L ++ F G V LD +A + E R+TI +++EP LI++ +++T RGR Sbjct: 243 QGLSQINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEKTSRGR 302 Query: 319 MATTRAWNHF 328 T + ++ Sbjct: 303 RITKKGRDYL 312 >UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Mycoplasma RepID=RUVB_MYCPU Length = 315 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 186/308 (60%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 + IRPK ++VGQ +++ +++ I +A+++ LDH+L +G PG GKT+LA+I++N + Sbjct: 5 QEIRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLN 64 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 ++ G +L+K D+ + ++E +D++F+DEIH ++ +EE+LY +ED+ +DI+IG Sbjct: 65 SRIKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIG 124 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 ++ ++++L PFT IGATT+ ++ PLRDRFG++ ++ YQV D++ I+ +++ + Sbjct: 125 VESNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKL 184 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 +++ + +A ++ PR+A LL+R +DF + I + + L L + G Sbjct: 185 NIQIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENG 244 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 + K L ++ + F+ V LD + + ++ETI +EP LI + +TPRGR Sbjct: 245 LNESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGRKI 304 Query: 321 TTRAWNHF 328 T + ++ Sbjct: 305 TQKGISYL 312 >UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y6_COPPD Length = 320 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 120/301 (39%), Positives = 176/301 (58%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 L+E+VGQ S + ++AAK G DH+L FGPPGLGKTTLA +VA E+ N T+ Sbjct: 14 LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73 Query: 88 GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 147 G L D+ +L + V FIDEIHR+ VEE+LY M++ + +M+G+ AR Sbjct: 74 GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133 Query: 148 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDD 207 IK DL PFTLIGATT+ L+ P RF I +Y ++ I+ GL++S + Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193 Query: 208 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRK 267 E+A+R+RGTPR A ++ RRV ++A + H T+ ++LN+D G +D+ Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNH 327 + + + F GGP G+ LA+A+G + ET+E V+EPYL+ GF+ T RGR T + W Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWKA 313 Query: 328 F 328 + Sbjct: 314 Y 314 >UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Mycoplasma RepID=A5IY13_MYCAP Length = 320 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 182/306 (59%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP +E++GQ ++ ++ I + R + LDH+L +GPPG GKTTLA+++ NE+ Sbjct: 6 LRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNKR 65 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + G +LEK D+ ++ N+ +D++FIDEIH ++ VEE++Y AMED+++D++IG Sbjct: 66 VHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGPE 125 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 ++ ++++L PFTL+GATT+ L+ P +DRFG++ RL Y ++ I+ S + + + Sbjct: 126 GNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLKV 185 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E D + +A+ +R TPRIAN LL+R DF+ + I A L + G + Sbjct: 186 ETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGLN 245 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + L + + F+ V +D ++ + +E + + +EPYL+ ++++PRGR TT Sbjct: 246 KEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRITT 305 Query: 323 RAWNHF 328 + ++ Sbjct: 306 KGVDYL 311 >UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n=2 Tax=Mycoplasma RepID=C5J672_MYCCR Length = 321 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 182/310 (58%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 + IRP E ++GQ ++ +++ I++++ R LDH+L GPPG GKTTLANI+A+ Sbjct: 3 ENLEIRPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANIIASM 62 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138 + ++ GP+LEK D+ AML N+ V+FIDEIH ++ +EE+LY AME++ +D+ Sbjct: 63 VNTKIKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFVIDLQ 122 Query: 139 IGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR 198 IG + +++ LP FTLIGA+T+ +++PL++RFG + ++ Y D++ I+ SA+ Sbjct: 123 IGVDGENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIYNSAK 182 Query: 199 FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDA 258 + + + + TPRIAN LL+R+RDFA V++ I +I + D + V Sbjct: 183 KLHINLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSIGVYK 242 Query: 259 EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGR 318 G + L + F V LD L + E R+TI ++EP L+++ ++++T RGR Sbjct: 243 NGLSETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKTIRGR 302 Query: 319 MATTRAWNHF 328 T + + Sbjct: 303 RITQQGVWYL 312 >UniRef50_Q0W1R6 Holliday junction resolvasome, helicase subunit n=3 Tax=cellular organisms RepID=Q0W1R6_UNCMA Length = 337 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 148/249 (59%), Positives = 190/249 (76%) Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 + GP +E+AGDLAA+LTNL+ DVLFIDEIHRLS VVEE+LY AMED+++DI+IG Sbjct: 84 RTFASPQGPAIERAGDLAAILTNLKEGDVLFIDEIHRLSHVVEEILYSAMEDFEIDIIIG 143 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 +GP+ARSI+++LP FTL+GATTRAG L+ PLRDRFG+ R EFY DL+ I+ RSA+ + Sbjct: 144 KGPSARSIRLELPRFTLVGATTRAGMLSPPLRDRFGMSLRFEFYTPEDLKTIIDRSAKIL 203 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 +E++ DG++E+A R+RGTPRIANRLLRRVRDFA V+ I IA ++LD L+VD G Sbjct: 204 NMEITPDGSMEIAARSRGTPRIANRLLRRVRDFAHVEKKTVIDTGIARKSLDKLDVDFLG 263 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 D MDR++L +I + GGPVG + LA ++ EE +TIEDV EPYLIQ GF+ RTPRGRMA Sbjct: 264 LDAMDRRILKTIIKDYGGGPVGAETLAVSVSEETDTIEDVYEPYLIQIGFINRTPRGRMA 323 Query: 321 TTRAWNHFG 329 T A H Sbjct: 324 TPAAVEHLK 332 >UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMK4_MYCA5 Length = 317 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 172/307 (56%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 R K +++GQ ++ +++ I +A +DHLL +GPPGLGKT+LA I+A E Sbjct: 5 EFRVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATETKR 64 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N+ GP+LEK D+ +L +++ +D++FIDE+H ++ +EE+LY A+ED +DI +G Sbjct: 65 NIVYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPLGV 124 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 R +++ L F+LI ATT+ L+ PL+DRFG + +L Y ++ I++ SA Sbjct: 125 EGDRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAARNN 184 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + + + ++A +R TPR+AN LL+RV DFA + I+ + +A + + G Sbjct: 185 IPIDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQYGL 244 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 Y + L + F LD ++ I +E+ TI + +EP L+ ++++ RGR T Sbjct: 245 VYSQIEYLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGRKIT 304 Query: 322 TRAWNHF 328 + Sbjct: 305 ANGIRYL 311 >UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN3_MYCGA Length = 306 Score = 291 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 185/309 (59%), Gaps = 12/309 (3%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP +E++G+ +++ ++ FI A+ + ALDH+L +GPPG+GKT+LA I+ANE+ + Sbjct: 5 RPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANELKSKI 64 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + ++K DL + L +DVLFIDEIH LSP + E+L+P MEDY +DI+IG+ Sbjct: 65 KILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILIGKEF 124 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 ++ ++ LPPFTLIGATT G + PL +RFGI+ +L++YQ ++ I+ ++ Sbjct: 125 NSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAKEKIK 184 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 ++ D +++A ++GTPR A R+ +RV DF + TI + L+ LN+ G Sbjct: 185 LTKDEMVQIAEHSKGTPRNALRIYKRVMDFKLFDQEITIKS-----ILEKLNIYQYGLSN 239 Query: 264 MDRKLLLAVIDKFFGGP---VGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 +D + L F P +GL +L+ G + TIE +EPYL++ +++T +GR Sbjct: 240 LDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTSKGRQI 295 Query: 321 TTRAWNHFG 329 T +A +F Sbjct: 296 TQKAIQYFK 304 >UniRef50_P75242 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Mycoplasma RepID=RUVB_MYCPN Length = 307 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 188/304 (61%), Gaps = 7/304 (2%) Query: 25 PKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLR 84 P E+VG+ ++ +Q+++ IKA+++ LDH+L++GPPG+GKTTLA ++A+EM L+ Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67 Query: 85 TTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPA 144 G L++ D ++ ++ DVLF+DEIH ++P V E+++P M+D+++ ++IG+ Sbjct: 68 IIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFN 127 Query: 145 ARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEM 204 ++ +++ + PFT IGATT+ G + +PL DRFG++ +++Y +++ IVS M LE+ Sbjct: 128 SKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYGEQMELEL 187 Query: 205 SDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYM 264 + ++ + ++ TPRIA R+++R+ + V + A L + G + Sbjct: 188 KPEEITQITQHSKQTPRIAIRIVKRLFEQKIVNKKIDL-----AALFKSLMIYKNGLQSI 242 Query: 265 DRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRA 324 D + L A+ ++ P G+ ++ + +G ++ T+E+ +EP+L+++ +Q+T +GR+ T Sbjct: 243 DVQYLKALNGQYE--PQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTG 300 Query: 325 WNHF 328 N+ Sbjct: 301 RNYL 304 >UniRef50_Q8EWC6 Holliday junction DNA helicase n=1 Tax=Mycoplasma penetrans RepID=Q8EWC6_MYCPE Length = 322 Score = 274 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 177/308 (57%), Gaps = 9/308 (2%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 IRP+ L+++ G+ +++ + +I ++K R + LDH L +GP G+GKTTLA I++NE+ Sbjct: 4 LQIRPQYLKDFCGKNNIKNNLLAYIDSSKNRNECLDHCLFYGPAGVGKTTLAKIISNELS 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 N++ GP +++ D+ ++ +L + ++FIDE+H ++P E+LY AMED++++I IG Sbjct: 64 QNIKIVQGPEIQEKTDILNLIYSLNENSIIFIDEVHSINPKCFELLYSAMEDFEINIEIG 123 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 + + + +P FTLIGATT+ G+L +P +RFGIV + Y ++ I+ S + Sbjct: 124 KDFNKKLTTVSIPKFTLIGATTKLGNLPAPFEERFGIVINISEYTEKEIYKILDFSLKQC 183 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 +++ ++ R++G PRIA R+L R D + S + A L + V +G Sbjct: 184 DIKVDKKVLEIISHRSKGIPRIAKRILARYLDHSLT------SNNTAETILKNIGVYEKG 237 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 + +D LL + + +GL L+ + + +TI + +EP+LI+ F+ +T GR+ Sbjct: 238 LNEIDLSYLLCI---YENTKLGLKTLSQILNVDEKTIIEKIEPFLIKNNFISKTINGRIL 294 Query: 321 TTRAWNHF 328 T N Sbjct: 295 TDNGLNFL 302 >UniRef50_B3H0C7 Holliday junction ATP-dependent DNA helicase RuvB n=13 Tax=cellular organisms RepID=B3H0C7_ACTP7 Length = 210 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 162/206 (78%), Positives = 186/206 (90%) Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPAMEDYQLDIMIGEGPAARSIK+DLPPFTL+GATTRAGSLTSPLRDRFGIVQRLEFY Sbjct: 1 MLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFY 60 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V DL IV RSA + L +S DGA EVARR+RGTPRIANRLLRRVRD+A+V+++G I++ Sbjct: 61 SVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNGVITS 120 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 DIA QAL ML+VD+EGFD+MD KLL A++++F GGPVGLDNLAAAIGEER+TIEDVLEPY Sbjct: 121 DIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPY 180 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGI 330 LIQQGFLQRTPRGR+AT+R + H GI Sbjct: 181 LIQQGFLQRTPRGRIATSRTYAHLGI 206 >UniRef50_Q6F144 Holliday junction DNA helicase n=3 Tax=Mollicutes RepID=Q6F144_MESFL Length = 315 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 164/306 (53%), Gaps = 3/306 (0%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RP EY+GQ +V ++I I+++ + LD ++ GP G+GKT+LA +++ + Sbjct: 5 FRPSKWSEYIGQEKVIKNLKICIESSIKQNKVLDPIIFSGPSGMGKTSLAYLLSKILKTK 64 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + +GP L++ DL ++LT+++ + +LFIDE+H +S + EVLYP +E+ +L I+IG+ Sbjct: 65 IHIVNGPSLQRPSDLISVLTSIKENQILFIDEVHSVSKDIMEVLYPVLEENKLSIIIGKE 124 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 ++ + I LP FT+I ATT L P +RF I LE Y DL I+ + + Sbjct: 125 YNSKIVNIKLPNFTIITATTEINKLPFPFLNRFPIQFELEGYNHDDLTKIIINTFNKLQY 184 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 ++ + A +A+ +R PR+A L++R+ DF + +S + + G + Sbjct: 185 KIEIEQAKIIAKFSRLVPRVAINLVKRIYDFLITEKIKDLSEKNLIWVFKQMGLYEYGLN 244 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 D L +++ + LD+LA I +TI + +EP +++ + +T RGR T Sbjct: 245 EKDLDYLFTLLE---NNTLSLDSLAQIINVPNQTILNNMEPIFLKERLIIKTGRGRQLTN 301 Query: 323 RAWNHF 328 + + Sbjct: 302 KGKIYL 307 >UniRef50_B1AJ89 Holliday junction ATP-dependent DNA helicase ruvB n=15 Tax=Ureaplasma RepID=RUVB_UREP2 Length = 312 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 172/311 (55%), Gaps = 9/311 (2%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 + RP+ L++++G+ Q+++ +++++ A+K ++ DH L+ G G GKTTLA I+ANEM Sbjct: 4 NYEFRPQYLKDFIGKEQLKNNLKVYLTASKRLENSFDHTLLHGLSGTGKTTLALIIANEM 63 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 VN T G +L K D+ +L+ ++ +DV+FIDEIH E LY +ED+ +DI I Sbjct: 64 NVNCHITQGNLLNKPIDIINLLSLIKENDVVFIDEIHACGLGAFETLYSVLEDFCIDINI 123 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR- 198 G+ ++ ++ +P FTLIGATT G + L +RFG + L Y+ ++ I+ ++ + Sbjct: 124 GKDFNSKMTRLKIPHFTLIGATTIFGKIPKSLEERFGHIFHLNEYEPSEISAIILKNNQM 183 Query: 199 FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDA 258 ++++++ +A A+G PR+ANRLL+RV DF + + + Sbjct: 184 HFQIDLNEEEIDLIANNAKGIPRLANRLLKRVVDFKIN------GFNDIKNIFKKIQIYE 237 Query: 259 EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGR 318 G D D L + + +GL ++A + ++ TIE +EPYLIQ F+ + RGR Sbjct: 238 FGLDEQDINYLNVLYRQ--DNEIGLKSIAQILRLDQYTIETKIEPYLIQHHFINKNLRGR 295 Query: 319 MATTRAWNHFG 329 T + Sbjct: 296 KITIEGIDFLK 306 >UniRef50_UPI00016C564A Holliday junction DNA helicase RuvB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C564A Length = 318 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 10/306 (3%) Query: 25 PKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLR 84 P L +GQ V Q+ + + AA DH L+ GPPG GKT A ++A EM + Sbjct: 12 PTSLAHLIGQRSVVEQVRVALDAAHQDAKKFDHALLCGPPGCGKTQTAKVIAQEMAGEFQ 71 Query: 85 TTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI-GEGP 143 G ++ DL A+L + DV+ +DE H L + LY A++ ++ + G P Sbjct: 72 EVLGQAIQSPADLNALLLGAKDRDVILLDEAHELDREYQTALYLAIDQRRVLLQTKGRTP 131 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 A I L FTL+ ATT L PLRDR + R FY +L ++ + A + + Sbjct: 132 QA----IPLADFTLLLATTDEFKLLQPLRDRMRLCLRFGFYSAEELAELIRQRAAALAWD 187 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 + + +A R+RGTPR+A RLL+ R + D ++ +A + +D G Sbjct: 188 VDVNVYRPIAARSRGTPRLALRLLQAARRVCRSQGDERVTGVHLERACLLEGIDGLGLGP 247 Query: 264 MDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRG-RMATT 322 +++ L + G L+ +A+ +G T+ +V EP+LI+ G + + +G R T Sbjct: 248 TEQQYLAVL----GEGANRLNVIASRLGLPTRTVAEVTEPFLIRAGLVAKDDQGRRQLTA 303 Query: 323 RAWNHF 328 +HF Sbjct: 304 EGRDHF 309 >UniRef50_A3DD23 Recombination protein MgsA n=8 Tax=Bacteria RepID=A3DD23_CLOTH Length = 432 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 66/340 (19%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A R +RP+ LEE+ GQ ++ + ++ + ++ D + ++++GPPG GKT+LA I+ Sbjct: 6 EPLAYR-MRPRTLEEFYGQEEIVGEGKLLNRM--IKADRISSIILYGPPGTGKTSLARII 62 Query: 76 ANEMGVNLRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 AN N + + D + N + VLFIDEIHR + ++ L P Sbjct: 63 ANSTKANFEKLNAVTAGVADIKRIVSDTQNPILNPKGRTVLFIDEIHRFNKSQQDALLPY 122 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 +ED + L+GATT + L R + L+ Sbjct: 123 VEDGTI--------------------ILVGATTENPFFEVNKALISRSSVFM-LKPLGSD 161 Query: 188 DLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 ++ I+ R M +E+ +D +A G RIA L Sbjct: 162 AIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICDGDARIALNALEL----------- 210 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF-----FGGPVGLDNLAAAIGEERE 295 A+ V ++G ++D +L+ I K G DN++A I R Sbjct: 211 ---------AVLTSPVGSDGKFHIDIQLIEECIQKKAARYDKSGEEHYDNISAFIKSMRG 261 Query: 296 TIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 + D YL + + P R A G+ P Sbjct: 262 SDPDAAVFYLARALYAGEDPMFLARRIMICAAEDVGMANP 301 >UniRef50_Q2LUH3 ATPase, AAA family n=27 Tax=Bacteria RepID=Q2LUH3_SYNAS Length = 478 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 129/321 (40%), Gaps = 56/321 (17%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +ADR +RP+ L+E+ GQ + + + +A + D L ++ +GPPG GKTTLA IVA Sbjct: 40 PLADR-MRPETLDEFFGQEHLLKKHSLLRRA--IEEDRLFSVIFWGPPGSGKTTLARIVA 96 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYPA 129 E S VL +L ++ E VLF+DEIHR + ++ P Sbjct: 97 GETKAYFAAFSA-VLSGVKELRKVVEEAEARWQNNRQKTVLFVDEIHRFNKAQQDAFLPH 155 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +E + TLIGATT S + +PL R ++ L+ + Sbjct: 156 VESGLI--------------------TLIGATTENPSFEVIAPLLSRCRVLV-LKPFSDE 194 Query: 188 DLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF--AEVKH 238 DL I++R R +GLE+ D + A G R A L V A Sbjct: 195 DLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLAAGEGQ 254 Query: 239 DGTISADIAAQALDM--LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA--IGEER 294 IS +AL L D G ++ + +I F G D AA +G Sbjct: 255 SSRISRVQVEEALQKKGLQYDKSGAEHYN------LISAFHKSLRGSDPDAALYWLGRML 308 Query: 295 ETIEDVLEPYLIQQGFLQRTP 315 ED P I + ++ Sbjct: 309 TAGED---PLYIARRMVRFAS 326 >UniRef50_Q3AA20 ATPase, AAA family n=34 Tax=Bacteria RepID=Q3AA20_CARHZ Length = 444 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 66/344 (19%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 +A R +RP+ L+E++GQ + + ++ +A + D L L+ +GPPG GKTTL Sbjct: 11 VNKEAPLAYR-MRPRSLDEFIGQEHILGEGKLLRRA--ILSDRLGSLIFYGPPGTGKTTL 67 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHRLSPVVEE 124 A I+A+ + + V G++ ++ + VLFIDEIHR + ++ Sbjct: 68 ARIIASTTKSGFESINA-VTSGVGEIREVIKKAKEREKYYGERTVLFIDEIHRFNKAQQD 126 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLE 182 L P +E + LIGATT + +PL R I + + Sbjct: 127 ALLPEVEAGTI--------------------VLIGATTENPYFEVNAPLLSRSRIFE-FK 165 Query: 183 FYQVPDLQYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + ++ IV R+ R +G +E+S++ + A G R A + Sbjct: 166 PLEPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIELAVLTTP 225 Query: 236 VKHDG--TISADIAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG 291 DG I+ +I Q++ + D EG ++ D ++A I Sbjct: 226 PDEDGVRKITVEIIEQSMQKKAIVYDKEGDNHYD-------------------TISAFIK 266 Query: 292 EERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 R + D YL + PR R A G+ P Sbjct: 267 SLRGSDPDAAVYYLARMLEAGEDPRFIARRLIVHAAEDVGLADP 310 >UniRef50_B9HZJ7 Predicted protein n=3 Tax=rosids RepID=B9HZJ7_POPTR Length = 553 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 59/332 (17%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 E +A+R +RP+ +++ +GQ + SQ + A +R + ++++GPPG GKT++A Sbjct: 125 DEPLAER-MRPRTIDDVIGQDLLLSQNSLLRSA--IRCSRIPSIILWGPPGTGKTSIARA 181 Query: 75 V---ANEMG---VNLRTTSGPVL------EKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 + AN G + S + D VLF+DE+HR + Sbjct: 182 IVTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNSKRTVLFLDEVHRFNKSQ 241 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGI--- 177 ++ P +ED + IGATT S L +PL R + Sbjct: 242 QDSFLPVIEDGTI--------------------VFIGATTENPSFHLVTPLLSRCRVLTL 281 Query: 178 -------VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLR-- 228 VQ + V D +S+S +G+++S+D ++ G R+A L Sbjct: 282 SPLKPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVALNALEIS 341 Query: 229 RVRDFAEVKHDG-----TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL 283 A V DG +++ D A +AL ++ + L+ A+ G Sbjct: 342 AATAAARVGSDGDLRLASVALDDAKEALQSKHLAYDRAGEEHYNLISALHKSMRGS---- 397 Query: 284 DNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 D A+ R +E +P I + ++ Sbjct: 398 DADASIYWLVR-MLEGGEQPLYIARRLVRFAS 428 >UniRef50_Q74BH4 ATPase, AAA family n=3 Tax=Bacteria RepID=Q74BH4_GEOSL Length = 440 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 44/280 (15%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A+R +RP+ L+EYVGQ + + ++ + + D L L+ +GPPG GKTTLA ++ Sbjct: 16 APLAER-MRPRTLDEYVGQEHLLGEGKLLRRL--IESDTLTSLIFWGPPGSGKTTLARVI 72 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYP 128 AN + S +L ++ ++ E + +LF+DEIHR + ++ P Sbjct: 73 ANATKSHFIFFSA-ILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLP 131 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQV 186 +E FT+IGATT S + +PL R ++ L Sbjct: 132 YVERGT--------------------FTIIGATTENPSFEVVAPLLSRCKVLV-LNPLSQ 170 Query: 187 PDLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 +++ I+ R GL DD +A ++ G R+A L A + + Sbjct: 171 ENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETA---ARLVKN 227 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 G I + +A+ + + ++ A I G Sbjct: 228 GRIDLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGS 267 >UniRef50_O48696 F3I6.23 protein n=4 Tax=Embryophyta RepID=O48696_ARATH Length = 525 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 129/331 (38%), Gaps = 51/331 (15%) Query: 6 RLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPG 65 +L S+ + +++R +RP+ L++ VGQ + S + A + + L ++ +GPPG Sbjct: 91 KLSSSSHRQHQPLSER-MRPRTLDDVVGQDHLLSPSSLLRSA--VESNRLPSIVFWGPPG 147 Query: 66 LGKTTLANIVANEMG----VNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDE 114 GKT++A + N + S V D+ + + + VLF+DE Sbjct: 148 TGKTSIAKSLINSSKDPSLYRFVSLSA-VTSGVKDVRDAVESAKRLNLEGRKRTVLFMDE 206 Query: 115 IHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLR 172 +HR + ++ P +ED + IGATT S L +PL Sbjct: 207 VHRFNKSQQDTFLPVIEDGSI--------------------LFIGATTENPSFHLITPLL 246 Query: 173 DRFGIVQRLEFYQVPDLQYIVSRSARF------MGLEMSDDGALEVARRARGTPRIANRL 226 R ++ L + ++ ++ R+ +E+ D +A G R+A Sbjct: 247 SRCRVL-TLNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNA 305 Query: 227 LRRVRDFAEVK--HDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLD 284 L A + D +S D A +AL ++ + L+ A+ GG D Sbjct: 306 LEISATMATTRAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGG----D 361 Query: 285 NLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 AA R +E EP I + ++ Sbjct: 362 ANAAIYWLAR-MLEGGEEPLYIARRLIRFAS 391 >UniRef50_D0N7J3 ATPase WRNIP1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7J3_PHYIN Length = 499 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 50/317 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP L + VGQ ++ + + + D + +++++GPPG GKTTLA++++ Sbjct: 85 PLAER-MRPTDLNDLVGQEELLGPGSLL--STLIEADRVPNMILWGPPGCGKTTLAHVIS 141 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTN-------LEPHDVLFIDEIHRLSPVVEEVLYPA 129 + G + SG KAGD+ + ++F+DEIHR + + ++ P Sbjct: 142 KKTGCKFISLSGAT-SKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPP 200 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +ED + TLIGATT S + + L R V L+ + Sbjct: 201 VEDGTI--------------------TLIGATTENPSFEVNNALLSRC-RVYSLKKHTPE 239 Query: 188 DLQYIVSRSA---RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG---T 241 ++ I+ R+ M E D+ + + G R A L A + D Sbjct: 240 SIERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEMAIQTAPIDPDKRVLR 299 Query: 242 ISADIAAQALDM---LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 +SA L D + D + A+ G A + +E Sbjct: 300 VSAIHVQHCFAHRQTLFYDRNADMHYDV--ISALHKSIRGSDEN-----ATLYWLARMLE 352 Query: 299 DVLEPYLIQQGFLQRTP 315 P + + ++ Sbjct: 353 GGENPLYVARRLIRVAS 369 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 125/328 (38%), Gaps = 40/328 (12%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +V R RPK E V Q V+ + I+ + + GP G GKTTLA I+A Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAIIGAIQ----KNSVAHGYIFAGPRGTGKTTLARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLF--------IDEIHRLSPVV----EE 124 + R P + DV+ IDEI R+ V E Sbjct: 58 KSLNCENRKGVEPCNSCRA--CREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPME 115 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y ++ ++ E A ++ PP + ATT + + R Q E Sbjct: 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR---CQVFE 172 Query: 183 FYQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 F +PD ++ + A G+E+ + +A+RA G R A +L +V F+E G Sbjct: 173 FRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE----G 228 Query: 241 TISADIAAQALDMLNV-----DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 I + +AL ++ + D K + V+D + + L +E Sbjct: 229 KIDLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLI------QE 282 Query: 296 TIEDVLEPYLIQQGFLQRTPRGRMATTR 323 +ED++E ++G Q + + +R Sbjct: 283 AVEDLVEDLERERGVYQVSANDIVQVSR 310 >UniRef50_B0CAJ0 ATPase, AAA family protein n=50 Tax=Bacteria RepID=B0CAJ0_ACAM1 Length = 742 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 124/340 (36%), Gaps = 58/340 (17%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 +A R +RP+ L+E+VGQ ++ + +A ++ D L L+ +GPPG GKTTLA Sbjct: 13 ETEAPLAAR-LRPRTLDEFVGQDEIVGPGRLLRRA--IQADQLSSLIFYGPPGTGKTTLA 69 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL-------EPHDVLFIDEIHRLSPVVEEV 125 I+AN + + VL D+ + + +LF+DE+HR + ++ Sbjct: 70 QIIANTTQAHFLALNA-VLAGIKDIRSSVDEAQDRRGQYGQRTILFVDEVHRFNKAQQDA 128 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEF 183 L P +E+ LIGATT + L R I Q L Sbjct: 129 LLPWVENGT--------------------VILIGATTENPYFEVNKALVSRSRIFQ-LRS 167 Query: 184 YQVPDLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 DL+ ++ R+ + +E+ + A G R L + E Sbjct: 168 LMPDDLRQVLERALQDKYFGYGDTAIELEGAATEHLINVANGDARALLNALELAIETTEP 227 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 G I +A + + DK G D ++A I R + Sbjct: 228 DDQGVIPITLAVA-------------EASIQRRAVLYDK--EGDAHFDTISAFIKSMRGS 272 Query: 297 IEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 D +L + + PR R A G+ P+ Sbjct: 273 DPDAALYWLARMVYAGEDPRFIFRRMIILASEDVGLADPQ 312 >UniRef50_B8DU13 AAA ATPase, central domain protein n=49 Tax=Bacteria RepID=B8DU13_BIFA0 Length = 504 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 136/356 (38%), Gaps = 70/356 (19%) Query: 7 LISAGTTLPE---DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGD----ALDHLL 59 L +A E +A R +RP L+E VGQ V + + A A ++ Sbjct: 5 LFAASDPSEEVVRPLAVR-MRPTTLDEVVGQRHVLAPGSPLRRLADSASTGSLTAPSSVI 63 Query: 60 IFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFI 112 +FGPPG+GKTTLA+IVA + G S V DL +L VLFI Sbjct: 64 LFGPPGVGKTTLAHIVAKQSGRQYEELSA-VTSGVKDLREVLRRAHERLVSQGKETVLFI 122 Query: 113 DEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSP 170 DE+HR S ++ L P++E+ T I ATT S+ P Sbjct: 123 DEVHRFSKSQQDALLPSVENR--------------------DVTFIAATTENPSFSVIKP 162 Query: 171 LRDRFGIVQRLEFYQVPDLQYIVSRSA---RFMG--LEMSDDGALEVARRARGTPRIANR 225 L R +V +LE + +L+ ++ R+ R +G + + D + R A G R + Sbjct: 163 LLSR-SVVVKLESLEPEELRTVIERAVSNPRGLGGKVRVQGDAVDGIIRLAGGDARKSLT 221 Query: 226 LLRRVRDFAEVKHDG---TISADIAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGGP 280 +L + I+ D+ + +D+ V D G D+ D Sbjct: 222 ILEAAAGAVDESGSNVPAEITTDVVSTVMDVAAVRYDRNGDDHYD--------------- 266 Query: 281 VGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 ++A I R + D YL + PR R A G+ P+ Sbjct: 267 ----VISAFIKSMRGSDVDATLHYLARMIRAGEDPRFIARRIMIAAAEEVGMAAPQ 318 >UniRef50_Q6BHR7 DEHA2G16302p n=8 Tax=Saccharomycetales RepID=Q6BHR7_DEBHA Length = 786 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 119/321 (37%), Gaps = 48/321 (14%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 + +RPK L+EY GQ ++ + I ++ D + +++G PG+GKT+LA I++ Sbjct: 195 AQRLRPKSLDEYYGQEKLVGENGILKNI--IKSDQIPSFILWGVPGVGKTSLARIISQTS 252 Query: 80 GVNLRTTSGPV--LEKAGDLAAMLTN----LEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 SG ++ ++ M N +LF+DEIHR + V+++L P +E Sbjct: 253 NCKFLEVSGAEGNAKRLREVFTMADNERRLTGRKTILFLDEIHRFNKAVQDLLLPVIEKG 312 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQY 191 T+IGATT S L + L R +E D+ Sbjct: 313 I--------------------VTVIGATTENPSFTLNNALLSRMHTFI-MEPLLKEDIVK 351 Query: 192 IVSRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH-- 238 I++R + + + D +A + G R+A +L + + Sbjct: 352 IINRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSRVALNILESINAYLSSVQYS 411 Query: 239 --DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFG--GPVGLDNLAAAIGEER 294 G + A Q L V + L K + G D ++A R Sbjct: 412 RFSGYEEGEKAIQIPKTLGVIKVCLQNLKPLLETRNYQKMYDKQGESHYDTISAFHKSVR 471 Query: 295 ETIEDVLEPYLIQQGFLQRTP 315 + D YL++ P Sbjct: 472 GSDADAAVFYLVKMLVGGEDP 492 >UniRef50_D1BNC9 AAA ATPase central domain protein n=4 Tax=Veillonellaceae RepID=D1BNC9_VEIPT Length = 433 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 129/341 (37%), Gaps = 64/341 (18%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 T E + R +RP L+ GQ + + A + D + +L +GP G GKTTL Sbjct: 10 TNTYEPLPVR-MRPTKLDHLYGQEKAIGKGTFLR--AMVEKDTIPSMLFYGPCGTGKTTL 66 Query: 72 ANIVANEMG---VNLRTTSGPVLE---KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125 A I+A VNL T+ + E D + +L+ +LF+DEIHR + ++V Sbjct: 67 AGIIAKVSNSHFVNLNATNAGIGELRTIIEDARKRVRSLQQRTILFLDEIHRFNKSQQDV 126 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEF 183 L P +ED + LIGATT + PL R ++ LE Sbjct: 127 LLPCVEDGTI--------------------ILIGATTENPFFEVNRPLLSRLRLI-TLEA 165 Query: 184 YQVPDLQYIVSRS-------ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 + I+ R+ L+++D+ +V G R+A +L + A V Sbjct: 166 LTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAA--AMV 223 Query: 237 KHDGTISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 +GTI+ ++ + + + D +G + D ++A I R Sbjct: 224 PDEGTITIEVLEKVVGRRIYTYDKKGDSHYD-------------------TISAFIKSMR 264 Query: 295 ETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 + YL + P R A G+ P Sbjct: 265 GSDVQATVHYLARMIEAGEDPNFIARRIVICAAEDVGLADP 305 >UniRef50_B5Y9V9 AAA ATPase, central region n=80 Tax=Bacteria RepID=B5Y9V9_COPPD Length = 459 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 40/284 (14%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 ++ +A+R +RP+ L+E VGQ + + + K + D L L+++GPPG+GKT++ Sbjct: 14 SSKWIPLAER-MRPRTLDEIVGQDKAFGKGTLLRKL--IEEDKLTSLVLWGPPGVGKTSI 70 Query: 72 ANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVL 126 A ++AN S +++ + A + N+ V+F+DEIH + ++ Sbjct: 71 AMVIANTTKARFLRFSAVTSGIKEIKEVLEDAEVQFNMGRRTVIFVDEIHHFNKTQQDAF 130 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFY 184 P +E LI ATT S + SPL R +V LE Sbjct: 131 LPYVEKGA--------------------VVLICATTENPSFEIISPLLSRSKVVV-LEPL 169 Query: 185 QVPDLQYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 + D++ I+ R+ R +G + ++D+ + +A + G RIA L + Sbjct: 170 EAEDIKTILYRALADKERGLGNERVVITDEQLMRIAVYSDGDARIALNTLEMAVFGTDPN 229 Query: 238 HDG--TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 +G IS ++ ++AL + + L+ A+ Sbjct: 230 SEGIRVISDEVISEALQKKTLLYDKAGEEHYNLISALHKSMRNS 273 >UniRef50_UPI00016B2545 recombination factor protein RarA n=3 Tax=candidate division TM7 RepID=UPI00016B2545 Length = 400 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 79/331 (23%), Positives = 134/331 (40%), Gaps = 56/331 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ +++ +GQ + S+ +I K ++ L+++GPPG GKTTLA I+A E N Sbjct: 10 MRPQKIKDIIGQRHLLSEGKILYKI--IKQKEPVSLILWGPPGSGKTTLARIIAKETEAN 67 Query: 83 LRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 S + ++A NL+ VLF+DEIHR S V ++ P +E + Sbjct: 68 FMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFVDEIHRFSKVQQDAFLPHIESGLI-- 125 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 TLIGATT S + +PL R ++ L+ + D+Q I+++ Sbjct: 126 ------------------TLIGATTENPSFEIITPLLSRVKVM-TLKPLEDKDIQQILTK 166 Query: 196 SARFMGLE--MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 + + ++++ +A + G R+A L V + G I+ D AL Sbjct: 167 AIEKLAKSKLVTNESIEYLAHISSGDARVALGNLELVL----GINKGKITPDTINIALQK 222 Query: 254 LN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFL 311 + D G + D + A I G V A + I +P I + + Sbjct: 223 IPPTYDKNGNYHYD--TISAFIKSMRGSDV-----EATLYYLARMINAGEDPKFIARRMI 275 Query: 312 QRTPRGR-----------MATTRAWNHFGIT 331 +AT +A G+ Sbjct: 276 IFASEDIGLVGNGALSLAVATFQAVERVGLP 306 >UniRef50_C4KSW2 Recombination factor protein RarA n=89 Tax=Bacteria RepID=C4KSW2_BURPS Length = 436 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 104/281 (37%), Gaps = 39/281 (13%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 P A+RPK L + +GQ + + + A ++++GPPG+GKTTL Sbjct: 6 AVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAF--ESGKPHSMILWGPPGVGKTTL 63 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAM-------LTNLEPHDVLFIDEIHRLSPVVEE 124 A + A S VL D+ L H +LF+DEIHR + ++ Sbjct: 64 ARLTALAFDCEFIALSA-VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQD 122 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLE 182 L P +E T IGATT S + S L R + L+ Sbjct: 123 ALLPFVESGL--------------------VTFIGATTENPSFEVNSALLSRAQVYV-LK 161 Query: 183 FYQVPDLQYIVSRSARFM--GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 +L+ ++ R+ GL D + A G R LL + + A Sbjct: 162 SLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVT 221 Query: 241 TISADIAAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGG 279 TI A A+ M D G ++ D+ + A+ G Sbjct: 222 TIDAAFVESAMTMNARRFDKGGDNFYDQ--ISALHKSVRGS 260 >UniRef50_C6C7V1 AAA ATPase central domain protein n=14 Tax=Proteobacteria RepID=C6C7V1_DICDC Length = 447 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 44/287 (15%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 + + +A R +RP L +Y+GQ + + +A + L ++++GPPG GKTT Sbjct: 9 SSHQFQPLAAR-MRPTTLAQYIGQQHLLGPGKPLPRA--IEAGQLHSMILWGPPGTGKTT 65 Query: 71 LANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125 LA ++ ++ S + +A + A N +LF+DE+HR + ++ Sbjct: 66 LAELIGRYGEADVERISAVTSGIKDIREAVERARQNRNAGRRTILFVDEVHRFNKSQQDA 125 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEF 183 P +ED T IGATT S L S L R V L+ Sbjct: 126 FLPHIEDGT--------------------VTFIGATTENPSFELNSALLSR-ARVYLLKS 164 Query: 184 YQVPDLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 D++ ++ R + + D+ +A G R A LL + D AEV Sbjct: 165 LDTADIEQVLAQAMVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMAEV 224 Query: 237 KHDG-TISADIAAQALD---MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 DG + +A+ D +G Y D L+ AV G Sbjct: 225 DADGQRVLTPALLKAVSGERSARFDNKGDRYYD--LISAVHKSVRGS 269 >UniRef50_Q480Q0 ATPase, AAA family n=114 Tax=Gammaproteobacteria RepID=Q480Q0_COLP3 Length = 511 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 96/258 (37%), Gaps = 41/258 (15%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 +A + +A +RPK L +YVGQ + A + L+ +GPPG GK Sbjct: 50 NAAASSFMPLAA-KMRPKTLADYVGQQHILGGDSPL--AQSIEQGHCHSLIFWGPPGSGK 106 Query: 69 TTLANIVANEMGVNLRTTSG---------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 119 TTLA I+A + S +EKA A + VLF+DE+HR + Sbjct: 107 TTLAEIIAQHANAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFN 166 Query: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGI 177 ++ P +ED + IGATT + L L R Sbjct: 167 KSQQDAFLPHIEDGTI--------------------IFIGATTENPAFELNQALLSR-AR 205 Query: 178 VQRLEFYQVPDLQYIVSR------SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVR 231 + L+ DL ++ R + + + +++S D + R+ G R LL Sbjct: 206 LYTLKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCL 265 Query: 232 DFAEVKHDGTISADIAAQ 249 D + H+ Q Sbjct: 266 DSSVTTHENKQDDQHGEQ 283 >UniRef50_Q1QXX6 Recombination protein MgsA n=9 Tax=Bacteria RepID=Q1QXX6_CHRSD Length = 469 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 132/337 (39%), Gaps = 60/337 (17%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 L ++ +A R +RP+ L++YVGQ + + + A A+ ++++GPPG+ Sbjct: 28 LFASSQPDNTPLAYR-MRPRRLDDYVGQEALVGPGKPLRRMA--ESGAVRSMILWGPPGV 84 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL------EPHDVLFIDEIHRLSP 120 GKTTLA+I+A+ G L S V+ D+ A + +LF+DEIHRL+ Sbjct: 85 GKTTLADILADASGAMLERLSA-VMAGVKDIRAAVERAREGQVRGQPTLLFLDEIHRLNK 143 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIV 178 ++ L P +E L TLIGATT S + S L R V Sbjct: 144 SQQDALLPHVESGLL--------------------TLIGATTENPSFEVNSALLSR-ARV 182 Query: 179 QRLEFYQVPDLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVR 231 L + DL ++ R +E + +AR A G R A LL Sbjct: 183 YVLRKLETEDLLRVLHQALADTERGLGKRHIEADEGVLETLARSASGDARRALGLLETAC 242 Query: 232 DFAEVKHDGT-ISADIAAQALDM--LNVDAEGFDYMDR--------------KLLLAVID 274 DFAE G ++ + L D +G Y D LL + Sbjct: 243 DFAEPTEGGERLTLQALHEVLGHQASAFDKQGDHYYDLLSAIHKSIRSSRPDAALLYIAQ 302 Query: 275 KFFGGPVGLDN---LAAAIGEERETIEDVLEPYLIQQ 308 GG LD LAA E+ E P ++ Sbjct: 303 FTQGGGDPLDVVRRLAAIASEDVGNAEPRALPLVMAA 339 >UniRef50_Q3B4X4 Recombination protein MgsA n=36 Tax=Bacteria RepID=Q3B4X4_PELLD Length = 457 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 122/341 (35%), Gaps = 59/341 (17%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S+G + +A+R +RP+ ++E GQ + M + L G L ++ +GPPG GK Sbjct: 18 SSGAGAFQPLAER-VRPQSIDEMAGQEHLVGPMGPLRRF--LGGGQLPSMIFWGPPGSGK 74 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL------EPHDVLFIDEIHRLSPVV 122 TTLA I A+ + S + D+ +L N +LFIDEIHR + Sbjct: 75 TTLAEICASALDFRFEQLSA-IESGVKDVRRVLENAASSRARGIRTLLFIDEIHRFNKSQ 133 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQR 180 ++ L A+E LIGATT S + + L R V Sbjct: 134 QDTLLHAIEQGV--------------------VVLIGATTENPSFEINAALLSRMQ-VYT 172 Query: 181 LEFYQVPDLQYIVSRSARFMGL----EMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 L+ D++ +V+R+ L + + + R + G R A L Sbjct: 173 LKSLGPEDIRLVVTRALSVDPLFRDRHVQVEDMEFLLRFSGGDARKALNALEAAFLLIAE 232 Query: 237 KHD-GTISADIAAQALDM-LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 D I D+ +AL + G G + ++A I R Sbjct: 233 DEDPALIGRDLLERALQHRAPIYDHG------------------GEAHYNTVSAFIKSMR 274 Query: 295 ETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 + D +L + PR R A G P Sbjct: 275 GSDPDAALFWLARMIEGGEDPRFIARRLVIFASEDIGNADP 315 >UniRef50_P0AAZ6 Replication-associated recombination protein A n=338 Tax=cellular organisms RepID=RARA_ECO57 Length = 447 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 44/287 (15%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 + +A R +RP+ L +Y+GQ + + + +A + L ++++GPPG GKTT Sbjct: 9 SDNTFQPLAAR-MRPENLAQYIGQQHLLAAGKPLPRA--IEAGHLHSMILWGPPGTGKTT 65 Query: 71 LANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125 LA ++A ++ S + +A + A N +LF+DE+HR + ++ Sbjct: 66 LAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDA 125 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEF 183 P +ED + T IGATT S L S L R V L+ Sbjct: 126 FLPHIEDGTI--------------------TFIGATTENPSFELNSALLSR-ARVYLLKS 164 Query: 184 YQVPDLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 D++ +++++ + + D+ +A G R A L + D AEV Sbjct: 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEV 224 Query: 237 KHDGT--ISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 G + ++ + D +G + D L+ A+ G Sbjct: 225 DDSGKRVLKPELLTEIAGERSARFDNKGDRFYD--LISALHKSVRGS 269 >UniRef50_B8LS10 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LS10_PICSI Length = 721 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 43/245 (17%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S+ + +++R +RP L++E VGQ + + I + L D + ++ +GPPG GK Sbjct: 198 SSARSSTAPLSER-MRPLLVDEVVGQDHLLGKNCILR--SLLECDRVPSIVFWGPPGTGK 254 Query: 69 TTLANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 TTLA +AN + + S + + + A + + + F+DE+HR + + Sbjct: 255 TTLARAIANSVSYRFSSVSAVTSGLKEVREVLEEAKRMKKMGQRTLFFVDEVHRFNKAQQ 314 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRL 181 + P +ED + IGATT S + + L R ++ L Sbjct: 315 DAFLPVVEDGSI--------------------VFIGATTENPSFEVNNALLSRCRVL-TL 353 Query: 182 EFYQVPDLQYIVSRS------------ARFMGLEMSDDGALEVARRARGTPRIANRLLRR 229 Q ++ ++ R+ F +++ + ++ + G R+A +L Sbjct: 354 NKLQPEHIRKLLERAVSDSDKGLMVSLKGFSAVKVEVEAIEFLSCASDGDARVALNVLEI 413 Query: 230 VRDFA 234 A Sbjct: 414 AASAA 418 >UniRef50_C9KPY4 Replication-associated recombination protein A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPY4_9FIRM Length = 462 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 115/289 (39%), Gaps = 46/289 (15%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S E +A R +RP+ +E+VGQ + + + + D + ++ +GPPG GK Sbjct: 33 SGAMRTFEPLA-RRMRPRNFDEFVGQQEAVGRGHFLRRM--IEMDQIPSIIFYGPPGTGK 89 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL-------EPHDVLFIDEIHRLSPV 121 TTLA ++A + V DL ++ + ++FIDEIHR + Sbjct: 90 TTLAQMIAAMTDSAFEKLNA-VSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKS 148 Query: 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQ 179 ++VL P +ED +L LIGATT + L R IV Sbjct: 149 QQDVLLPYVEDGRL--------------------ILIGATTENPFFEVNHALLSRVRIV- 187 Query: 180 RLEFYQVPDLQYIVSRSARFMG-------LEMSDDGALEVARRARGTPRIANRLLRRVRD 232 RL L ++ R+ + +E+ D+ L +A+ A G R+A LL Sbjct: 188 RLYQLTDAQLVEVLRRALKDEERGLGGQHVEVPDEVLLAMAQIAGGDARMALNLLEGAAA 247 Query: 233 FAEVKHDGTISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 GT++ D+ + + D G ++ D A I G Sbjct: 248 MLPTTG-GTVTLDMLEEITGERVQRYDKTGDNHYD--TASAFIKSMRGS 293 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 48/307 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + R RPK + VGQ ++ + +K K+ + GP G GKTT A I+A Sbjct: 2 EALYRKYRPKNFYDIVGQEHIKKLLTNALKLQKIN----HAYIFAGPRGTGKTTTARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + P E + N DV+ +D I + + E V + P M Sbjct: 58 KSLNCEKNQFGEPCNECTS--CQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVM 115 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + E A ++ PP I ATT + + R +++ Sbjct: 116 GKYKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLE-FR 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ + G +++ + ++A+RA G R A L +V + G + Sbjct: 175 NISEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYT----GGEV 230 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + I +AL +++ I+KF + A + +RE IE +L Sbjct: 231 TEKIVDEALGLIS--------------EETIEKF---------IEATLNNDRELIEKILN 267 Query: 303 PYLIQQG 309 I++G Sbjct: 268 DIYIERG 274 >UniRef50_B8DZZ0 AAA ATPase central domain protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZZ0_DICTD Length = 431 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 87/354 (24%), Positives = 140/354 (39%), Gaps = 65/354 (18%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 M + +RL + E ++ R +RP+ LEE++G + + KA + L L+I Sbjct: 1 MDKQERLFKEDNS-YEPLSFR-MRPRTLEEFLGAEDIIGEKSFLRKA--INKGYLPSLII 56 Query: 61 FGPPGLGKTTLANIVANEMGVNLRTTSG---PVLEKAGDLAAMLTNLE---PHDVLFIDE 114 +GPPG GKTTL+ ++A + + V E L NLE VLF+DE Sbjct: 57 YGPPGSGKTTLSVLLAKAINAEFIELNAAIVGVQELKEALQKAKRNLELYNKRTVLFLDE 116 Query: 115 IHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLR 172 IH + + ++VL P +E + LIGATT SL + L Sbjct: 117 IHHFNKLQQDVLLPFVERGIM--------------------ILIGATTENPFFSLNTTLL 156 Query: 173 DRFGIVQRLEFYQVPDLQYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANR 225 R +V+ L+ +++ I+ R+ R +G LE+++D E+ R A G RIA Sbjct: 157 SRCRLVE-LKPLSKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFANGDARIALN 215 Query: 226 LLRRVRDFAEVKHDGT--ISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPV 281 L +G I+ +I + + + D G ++ Sbjct: 216 TLELASFMVAPSENGKLIITRNIVKEVIGKRIFRYDQRGDEHYH---------------- 259 Query: 282 GLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 ++A I R + D YL + PR R A G+ P Sbjct: 260 ---TISAFIKSIRGSDPDAALYYLAKMLLSGEDPRFIARRLIIHAAEDIGMADP 310 >UniRef50_D2RB58 Recombination factor protein RarA n=2 Tax=Gardnerella vaginalis RepID=D2RB58_GARVA Length = 462 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 133/355 (37%), Gaps = 71/355 (20%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGD----ALDHLLIFGPP 64 SA + + +A R +RP +E+ +GQ + + A + A +++FGPP Sbjct: 10 SAPSNVTRPLAVR-MRPSSIEDVLGQSHALKEGSPLRRLANPQSKGSLTAPSSVVLFGPP 68 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHR 117 G+GKTTLA IVA + G S V D+ A+L VLFIDE+HR Sbjct: 69 GVGKTTLAYIVARQSGRVFEELSA-VTSGVKDVRAVLDRAHERLVSNGQETVLFIDEVHR 127 Query: 118 LSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRF 175 S ++ L P++E+ T IGATT S+ PL R Sbjct: 128 FSKSQQDALLPSVENR--------------------DVTFIGATTENPSFSIIKPLLSR- 166 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMG-----LEMSDDGALEVARRARGTPRIANRLLRRV 230 +V +L V DL ++ R+ L++ DD + R + G R +L Sbjct: 167 SVVVKLASLSVEDLHTLIERALTSENGLNNQLKIDDDAIDSIIRLSGGDARKTLTILEAA 226 Query: 231 R-------DFAEVKHDGTISADIAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGGPV 281 K I+ DI + +D V D +G D+ D Sbjct: 227 AGAVTGDVALQHGKKKPVITDDIVSNVMDTTTVRYDKDGDDHYD---------------- 270 Query: 282 GLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 ++A I R + D YL + PR R A G+ P+ Sbjct: 271 ---VISAFIKSMRGSDVDASLHYLARMLRAGEDPRFIARRIMIAAAEEVGMAAPQ 322 >UniRef50_C4Y1S6 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y1S6_CLAL4 Length = 768 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 53/316 (16%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 + +RPK L+++ GQ ++ I + + +++G PG+GKT+LA I+A+ Sbjct: 225 AQRLRPKTLDDFFGQEKLVGPNGILRNI--MASQQIPSFILWGVPGVGKTSLARIIASNS 282 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNL-------EPHDVLFIDEIHRLSPVVEEVLYPAMED 132 SG A L +N +LF+DEIHR + V+++L P +E Sbjct: 283 NHRYVELSGSE-SSAKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVIEK 341 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQ 190 T+IGATT S L + L R +E L Sbjct: 342 GV--------------------VTVIGATTENPSFTLNNALLSRMHTFV-MEPLSHEALV 380 Query: 191 YIVSRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 I+++ + + M+ + +AR + G R+A +L V + + Sbjct: 381 KILNKGLLLVNKTRKIVHGLHLIAMNKEAIDHIARLSTGDSRVALNILESVNAYLSGRKY 440 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVI-----DKFFG--GPVGLDNLAAAIGE 292 + +D+ G +D + L ++ + + G D ++A Sbjct: 441 NAFPDREEGETIDVPE--KIGIIKVDLENLKPLLATRNFHQMYDKVGENHYDTISAFHKS 498 Query: 293 ERETIEDVLEPYLIQQ 308 R + D YL++ Sbjct: 499 VRGSDADAAVFYLVKM 514 >UniRef50_C6IZU9 AAA ATPase central domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZU9_9BACL Length = 452 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 45/280 (16%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP L+EY+GQ + ++ +A + D + +L++GPPG GKTTLA+I+++ Sbjct: 32 LADR-MRPTSLDEYIGQEHIVGPGKLLRRA--IEADQVSSILLYGPPGCGKTTLAHIISH 88 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNL-------EPHDVLFIDEIHRLSPVVEEVLYPAM 130 + V D+ ++ +LF+DE+HR + ++ L PA+ Sbjct: 89 HTKAEFVRLNA-VDASVKDVREVIEKAQNDKAFYGTKTILFLDEVHRFNSSRQDALLPAV 147 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPD 188 E + IGATT + L R + Q LE Sbjct: 148 EKGTI--------------------IFIGATTENPFHYVNGALMSRSTLFQ-LEPLTKEH 186 Query: 189 ----LQYIVSRSARFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ ++ + +G L++ ++ L +A A G R A L + DGT Sbjct: 187 SLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMANGDIRRALNALELAAMTTPPQPDGT 246 Query: 242 --ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 I+ ++A +++ V + + +L A G Sbjct: 247 VHITLEVAEESIRRPLV--KADESTQYDVLSAFHKSIRGS 284 >UniRef50_D0LV62 AAA ATPase central domain protein n=6 Tax=cellular organisms RepID=D0LV62_HALO1 Length = 463 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 85/358 (23%), Positives = 134/358 (37%), Gaps = 68/358 (18%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + +A+R +RPK L+E+VGQ + ++ + G AL L+++GPPG GKTTLA+I+ Sbjct: 15 QPLAER-MRPKSLQEFVGQNHLLGPRKLLARLGP--GAALPSLILWGPPGTGKTTLAHIL 71 Query: 76 ANEMGVNLRTTSGPV------LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 A G L S + + VLFIDEIHR S ++ L P Sbjct: 72 ATRAGSRLAAISAVTAGVREMRQLVSEAGDRRDQFGSRTVLFIDEIHRFSKAQQDALLPH 131 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +E TLIGATT S + + L R ++ RL Sbjct: 132 VEAGT--------------------VTLIGATTENPSFHVNAALLSRCRVL-RLGALSDE 170 Query: 188 DLQYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 +L + R+ R +G + +SD+ ++ ++ G R L Sbjct: 171 ELGALARRALSDRERGLGRAAVSVSDEVLTDLVAQSGGDARRMLNALEVAVSLVRGGEGE 230 Query: 241 TISADIAAQALDM-----------LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 D A +AL L D G ++ V+ F G D AAA Sbjct: 231 GEDEDEAPRALGREAIEEALQQKTLLYDKAGDEH------FGVVSAFIKSMRGSDPDAAA 284 Query: 290 IGEERETIEDVLEPYLIQQGFLQRTPRGR---------MATTR--AWNHFGITPPEMP 336 R +E +P + + + +AT+ A+ G+ +P Sbjct: 285 YWMTR-MLEAGEDPLFVLRRMVVFASEDIGNADPQALAVATSALSAYQFLGMPEGVLP 341 >UniRef50_Q3A5K5 ATPase, AAA family n=9 Tax=Bacteria RepID=Q3A5K5_PELCD Length = 726 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 117/326 (35%), Gaps = 51/326 (15%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 L S ++ + +RP+ LEEYVGQ + + + +A +R D L L+ +GPPG Sbjct: 3 LFSQASSFSSEPLASRMRPRTLEEYVGQDHILGEGRLLRRA--IRADQLSSLIFYGPPGT 60 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLS 119 GKTTLA ++AN + + VL DL + + +LF+DE+HR + Sbjct: 61 GKTTLAQVIANSTASRFVSMNA-VLSGVKDLREAIEDARQSQEYYDKRTILFVDEVHRWN 119 Query: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGI 177 ++ L P +E + LIGATT + L R + Sbjct: 120 KSQQDALLPWVEKGTI--------------------ILIGATTENPYFEVNKALVSRSRV 159 Query: 178 VQRLEFYQVPDLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 Q L +L+ IV R +E D + R A G R L+ Sbjct: 160 FQLL-GLTEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVASGDARSLLNALQLA 218 Query: 231 RDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI 290 T A +++ + + + G D ++A I Sbjct: 219 V--------ETTPESFPPPANSRIHIT---LSAAEESIQQKAVLYDKEGDYHFDTISAFI 267 Query: 291 GEERETIEDVLEPYLIQQGFLQRTPR 316 R + D ++ + PR Sbjct: 268 KSLRGSDPDAALYWMARMVRAGEDPR 293 >UniRef50_A4E6Q7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6Q7_9ACTN Length = 454 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 122/335 (36%), Gaps = 46/335 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A R +RP L+EYVGQ + + A + D L ++++GP G GKTTLA+I+ Sbjct: 22 APLAVR-MRPNSLDEYVGQQKAVGKGSWLRAA--IEHDVLSSVILYGPAGTGKTTLAHII 78 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYP 128 AN S V DL ++ + +LFIDEIHR S ++ L Sbjct: 79 ANHTKSEFVEVSA-VTGTVKDLRRVIDEAKTRLNTYDRRTILFIDEIHRFSKSQQDALLH 137 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQV 186 A+E+ +IGATT + S L R G V LE + Sbjct: 138 AVENRT--------------------VIMIGATTENPYFEVNSALLSR-GRVVELEHLKD 176 Query: 187 PDLQYIVSRSAR-----FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 D+ ++ R+ +D A + A G R A L + A + D Sbjct: 177 EDIATLIERALEAPQGLNGKFSADEDTAKTICTLAAGDARSALTTLELASEIAVTRPDTE 236 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 + AA + VD R G + D ++A I R + D Sbjct: 237 GTPAPAAGERYPITVDDVKIANPRRGFTYD-----KNGDMHYDIISAFIKSMRGSDPDAT 291 Query: 302 EPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 +L + P+ R A G P+ Sbjct: 292 VYWLARMIDAGEDPKFIARRIMIHASEDVGNADPQ 326 >UniRef50_B0RT44 ATPase n=6 Tax=Xanthomonas RepID=B0RT44_XANCB Length = 456 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 114/279 (40%), Gaps = 43/279 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP+ L+E VGQ ++ + +A + + ++++GPPG GKTTLA ++A Sbjct: 24 PLAER-MRPRTLDEMVGQKRLLAADSALRRA--VESGRVHSMILWGPPGCGKTTLALLLA 80 Query: 77 NEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 + + S P + + AA VLF+DE+HR + ++ P +E Sbjct: 81 HYADAEFKAISAVLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIE 140 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDL 189 + +GATT S L S L R V LE D+ Sbjct: 141 RGTI--------------------LFVGATTENPSFELNSALLSRC-RVHVLEGVSPQDI 179 Query: 190 QYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + R+ R +G +++S+ LE+A A G R A LL + A + G I Sbjct: 180 VEALQRALHDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELATGEG-GEI 238 Query: 243 SADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + Q L D G + D+ + A+ Sbjct: 239 TPRTLLQVLADRTRRFDKNGEQFYDQ--ISALHKSVRSS 275 >UniRef50_B9WCE8 AAA family ATPase, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WCE8_CANDC Length = 490 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 39/266 (14%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 AIRP E+YVGQ + + I+ ++ L +++ GPPG+GKTTLA++++ E G+ Sbjct: 25 AIRPTTFEQYVGQDHLINPQNGAIRNF-IKLGYLPSMILSGPPGIGKTTLASVISYECGL 83 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 S + DL ++ VLFIDE+HRL+ + ++ L P +E+ ++ Sbjct: 84 PFLELSATTMTT-SDLKIIMETHNTQLVLFIDELHRLTKIQQDWLLPYIENGKI------ 136 Query: 142 GPAARSIKIDLPPFTLIGATT-RAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSRSAR 198 LIGATT + S + + R I +LE VP+++ ++ + Sbjct: 137 --------------ILIGATTVQPNSTRIRQAILSRCQIF-KLEKLIVPEIKKVLYHAII 181 Query: 199 FMGLE-----------MSDDGALEVARRARGTPRIANRLLRRVRD-FAEVKHDGTISADI 246 F L+ + + RA+G RIA L+ + D F + +D +S D Sbjct: 182 FQNLKRKNLYQLGNIVYKSECFDLILNRAQGDCRIAINLVELISDNFVDNINDVELSKDK 241 Query: 247 AAQALDMLNVDAE-GFDYMDRKLLLA 271 Q LN + GF + ++ Sbjct: 242 LQQIFHSLNYNNSLGFGGDNYDDIMT 267 >UniRef50_B6KHT5 ATPase, AAA family domain containing protein n=4 Tax=Eukaryota RepID=B6KHT5_TOXGO Length = 1101 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 41/247 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP LEEYVGQ I+ L L L+++GPPG GKTT+A + Sbjct: 604 PLAER-LRPASLEEYVGQRGCIQGGRGSIR-ELLEAGHLPSLILWGPPGCGKTTIALLAG 661 Query: 77 NEMGVNLRTTSGP----------------VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 +G S P V + + + + VLF+DEIHR + Sbjct: 662 RSVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEALTLRATTKQKTVLFLDEIHRFNK 721 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIV 178 ++ L P +E + TLIGATT S + L R + Sbjct: 722 AQQDALLPHVETGTI--------------------TLIGATTENPSFEVNRALLSRCRVC 761 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 +LE DL I+ R+A+ + +++ + R A G R A +L + Sbjct: 762 -KLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENAIHHERTAN 820 Query: 239 DGTISAD 245 + + D Sbjct: 821 ENKATND 827 >UniRef50_A8ZU04 AAA ATPase central domain protein n=5 Tax=Bacteria RepID=A8ZU04_DESOH Length = 459 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 123/317 (38%), Gaps = 50/317 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +ADR +RP+ LE+ GQP V + A L L ++++GPPG GKTTLA I+A Sbjct: 18 PLADR-MRPEKLEDLAGQPHVTGPDSLLRSA--LEKGTLFSMILWGPPGCGKTTLARILA 74 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHRLSPVVEEVLYPA 129 G S VL ++ ++ +LF+DE+HR + ++ P Sbjct: 75 GMTGAAYVQISA-VLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPH 133 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +E TLIGATT S + L R ++ L Sbjct: 134 VESGL--------------------VTLIGATTENPSFEVIPALMSRCRLIV-LNPVPEE 172 Query: 188 DLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 ++ ++ R+ MGLE+ + +A A G R A L Sbjct: 173 AVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALADGDVRTALNNLEAAALLRPAGTGV 232 Query: 241 TISADIAAQALDM--LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 TI+ QALD L D G ++ + L+ A+ G D AA ER + Sbjct: 233 TITLAGVEQALDKKALLYDKSGEEHYN--LISALHKSLRGS----DPDAAVYWLER-MLS 285 Query: 299 DVLEPYLIQQGFLQRTP 315 +P+ I + ++ Sbjct: 286 GGEDPFYILRRMVRFAS 302 >UniRef50_B6HVW8 Pc22g06370 protein n=36 Tax=cellular organisms RepID=B6HVW8_PENCW Length = 539 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 122/341 (35%), Gaps = 59/341 (17%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A+R +RPK LEE GQ + I + D + ++++G G GKTT+A ++ Sbjct: 122 APLAER-MRPKTLEEVCGQE-LVGPNGILR--GLIEQDRVPSMILWGSAGTGKTTIARVI 177 Query: 76 ANEMGVNL---RTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEVLYPA 129 A+ +G +TS V E A + L ++F DEIHR S ++V Sbjct: 178 ASLVGSRFVEINSTSSGVAECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFLGP 237 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 +E Q TLIGATT + + L R L Sbjct: 238 VESGQ--------------------VTLIGATTENPSFKVQNALLSRCRTF-TLAKLTDE 276 Query: 188 DLQYIVSRSARFMGLE------MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 D+ I+ R+ + G + ++ +AR A G R + LL D + K G Sbjct: 277 DIISILHRALQVEGPSYSPSELVDEELIQYLARFADGDARTSLNLLELAMDLS--KRAGM 334 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 D+ L D G + D I F G D AA R I+ Sbjct: 335 DKEDLKRSLTKTLVYDRAGDQHYDT------ISAFHKSIRGSDPDAALYYLAR-MIQSGE 387 Query: 302 EPYLIQQGFLQRTPRGR-----------MATTRAWNHFGIT 331 +P I + + ++T A G+ Sbjct: 388 DPLYISRRLIVVASEDIGLADNTMLSLAISTHSAVEKIGLP 428 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 117/291 (40%), Gaps = 34/291 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK +E VGQ + ++ IK K+ L G G GKT++A I A + Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIG----HAYLFTGTRGTGKTSVAKIFAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 T P ++ + N DVL ID ++ + + E V+Y P+ Y+ Sbjct: 63 CLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT L + R QR +F ++ Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSR---CQRFDFKRI 177 Query: 187 PD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 P + + R G+++ + G +A G+ R A LL + + E G I+ Sbjct: 178 PTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLITY 233 Query: 245 DIAAQALDMLN--VDAEGFDYMDRKLL---LAVIDKFFGGPVGLDNLAAAI 290 + + L + N V DYM+ K + L +DK + + N ++ Sbjct: 234 EDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSL 284 >UniRef50_C8W9U5 AAA ATPase central domain protein n=2 Tax=Atopobium RepID=C8W9U5_ATOPD Length = 443 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 122/345 (35%), Gaps = 52/345 (15%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + A +A R +RP L+ YVGQ KA + D L +L++GP G Sbjct: 8 IERAAKKANAPLAAR-MRPTTLDGYVGQEDAVGPGSWLRKA--IEHDTLSSVLLYGPAGT 64 Query: 67 GKTTLANIVANEMGVNLRTTS---GPVLEKAGDLAAM---LTNLEPHDVLFIDEIHRLSP 120 GKTTLA I+A+ S G V + ++ A L +LFIDEIHR + Sbjct: 65 GKTTLARIIAHTTHAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRTILFIDEIHRFTR 124 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIV 178 ++ L A+ED LIGATT + S L R +V Sbjct: 125 SQQDALLHAVEDRI--------------------VVLIGATTENPYFEVNSALISRSRVV 164 Query: 179 QRLEFYQVPDLQYIVSRSARFM-----GLEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 + L + ++ R+ + +D E+ A G R A L Sbjct: 165 E-LHALSDNAIDELIQRALESEDGLAGAFVLEEDARKEIVTLAGGDGRAALTSLELASQM 223 Query: 234 AEVKH--DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG 291 +V DG S + ++L + D+ G + D ++A I Sbjct: 224 VDVPESADGKASEPLVITKQNVLEANPRRGLPYDK-----------AGDMHYDIISAFIK 272 Query: 292 EERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 R + D +L + P+ R A G P+ Sbjct: 273 SMRGSDPDAALYWLARMIDAGEDPKFIARRIMILASEDIGNADPQ 317 >UniRef50_C8R0G7 AAA ATPase central domain protein n=3 Tax=Bacteria RepID=C8R0G7_9DELT Length = 461 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 57/326 (17%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP L+++VGQ + + ++ A R L LL++GPPG GKTTLA I+A Sbjct: 21 PLAER-MRPARLDDFVGQRHLLADDKLL--AGLSRHGYLPSLLLWGPPGSGKTTLARILA 77 Query: 77 NEMGVNLRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 G + S + E + VLF+DEIHR + ++ P + Sbjct: 78 GGSGADFVFFSAVLSGVKEIREIVERSRRIRAESGRGSVLFVDEIHRFNKSQQDAFLPHV 137 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 E + TLIGATT S + +PL R ++ L D Sbjct: 138 EAGLI--------------------TLIGATTENPSFHVIAPLLSRCRVIV-LNPLAAED 176 Query: 189 LQYIVSRS-------ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 LQ I+ R+ + L++S + A + A G R L A+ + G Sbjct: 177 LQIILERALSDEERGLGKLRLKISREAADHLISIADGDARSLLNSLEIAAALAQDQARGQ 236 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 ++ ++ G ++ + + G + ++A R++ D Sbjct: 237 TASQ------EIGGEVQIGLTTVEEAIQRHSLRYDADGEEHYNLISALHKSLRDSDPDGA 290 Query: 302 ------------EPYLIQQGFLQRTP 315 EP I + ++ Sbjct: 291 LYWLGRMLAAGEEPLYIARRLIRFAS 316 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 30/256 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP +E VGQ + ++ I ++ L GP G GKT++A I A + Sbjct: 8 RKYRPSNFDEVVGQTHIIQTLKNAI----IQNRIAHAYLFCGPRGTGKTSIAKIFAKTLN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 P + M N D++ ID + + ++++V Y M+ Y+ Sbjct: 64 CTNSQ-DAPC--GVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I M A I+ PP I ATT + + R V Sbjct: 121 IYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFD-FNKVSV 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD------- 239 D++Y +S + G+E+ DG +A+ A G R A +L + + D Sbjct: 180 NDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKI 239 Query: 240 -GTISADIAAQALDML 254 G I+++ Q + Sbjct: 240 YGVITSEDIGQLFSSI 255 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 27/234 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RP+ ++ VGQ V + + LR + L H +F GP G GKT+ A I+A + Sbjct: 8 RVYRPQTFQDVVGQEHVTTTLRNA-----LRENRLSHAYLFNGPRGTGKTSAAKIMAKAV 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVE----EVLY 127 P + D ++N DVL ID EI + V+ +V Y Sbjct: 63 NCEQPIDGEPCNQC--DTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSDVRY 120 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ ++ E A ++ PP I ATT L + + R QR +F++ Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISR---CQRFDFHR 177 Query: 186 VP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 +P + ++ R + G+++ + VA+ A G R A LL + +++ + Sbjct: 178 IPLRVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSKDE 231 >UniRef50_C6D7W1 AAA ATPase central domain protein n=2 Tax=Bacillales RepID=C6D7W1_PAESJ Length = 436 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 43/279 (15%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 +ADR +RP+ L++Y+GQ + ++ +A + GD + +L++GPPG GKTTLANI++ Sbjct: 17 LADR-MRPETLDDYIGQEHIIGAGKLLRRA--IEGDQVSSILLYGPPGCGKTTLANIISK 73 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEEVLYPAM 130 + V D+ ++ + +LF+DE+HR + ++ L PA+ Sbjct: 74 RTAGEFVKLNA-VDASVKDVREVIDTAKTNKLMYGKKTILFLDEVHRFNTSRQDALLPAV 132 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRL---EFYQ 185 E + IGATT + L R + Q E + Sbjct: 133 EQGII--------------------IFIGATTENPFHHVNGALLSRSTLFQLEPLNEKHA 172 Query: 186 VPDLQYIV---SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG-- 240 + ++ + R FM L ++ +A A G R A L + DG Sbjct: 173 LEAMKRALTDKDRGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVTTPSEPDGSV 232 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 I+ ++A +++ V +L A G Sbjct: 233 RITMEVAQESIRKPTV--RADTSTQYDVLSAFHKSIRGS 269 >UniRef50_Q0EY57 ATPase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY57_9PROT Length = 448 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 82/329 (24%), Positives = 136/329 (41%), Gaps = 47/329 (14%) Query: 3 EADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFG 62 +A L + + + +A R IRP +L++ GQP + + F + + + +G Sbjct: 7 QASLLDNIASDVSIPLAYR-IRPAVLQDVAGQPDLTAADSWF--STMVSEGRCCSCIFWG 63 Query: 63 PPGLGKTTLANIVANEMGVNLRTTSGPVLEKA--GDLAAMLTNLEPHDVLFIDEIHRLSP 120 PPG+GKTTLA ++A+ G+ S KA D+ + +LF+DEIHR + Sbjct: 64 PPGVGKTTLATVMADAAGIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEIHRFNK 123 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIV 178 ++VL P +ED L L+GATT SL + L R ++ Sbjct: 124 AQQDVLLPCIEDGTL--------------------VLVGATTENPSFSLNNALLSRCRVI 163 Query: 179 QRLEFYQVPDLQYIVSRSARFMG-----LEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 L+ Q D+ I+ R+ R++G + DD + +A + G R A L + Sbjct: 164 V-LQALQASDVAVILKRACRYLGDQAKAFSLDDDALVWLAENSDGDARYALNALESLFQ- 221 Query: 234 AEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 A+ + ++ A D +G + D L+ A+ D AA Sbjct: 222 ADAERCWSLQAVQQQSLRRAARYDRDGDAHYD--LISALHKCIRDS----DPDAAVYWLA 275 Query: 294 RETIEDVLEPYLIQQGFLQRTPRGRMATT 322 R +E +P I + + RMAT Sbjct: 276 R-MLEAGEQPLYIARRLI------RMATE 297 >UniRef50_Q96S55 ATPase WRNIP1 n=37 Tax=Metazoa RepID=WRIP1_HUMAN Length = 665 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 66/348 (18%), Positives = 121/348 (34%), Gaps = 78/348 (22%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +AD +RP L++Y GQ + Q + + L + + L+++GPPG GKTTLA+I+A Sbjct: 226 PLAD-TMRPDTLQDYFGQSKAVGQDTLLR--SLLETNEIPSLILWGPPGCGKTTLAHIIA 282 Query: 77 NEMG------VNLRTTSGPVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEEVLY 127 + V L T+ + + + +LFIDEIHR + ++ Sbjct: 283 SNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFL 342 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQ 185 P +E + TLIGATT S + + L R ++ LE Sbjct: 343 PHVECGTI--------------------TLIGATTENPSFQVNAALLSRCRVIV-LEKLP 381 Query: 186 VPDLQYIVSRSARFMGLE------------------------MSDDGALEVARRARGTPR 221 V + I+ R+ +G+ + D +A + G R Sbjct: 382 VEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDAR 441 Query: 222 IANRLLRRV-------RDFAEVKHDGT-------ISADIAAQALDMLNVDAEGFDYMDRK 267 L+ R K + I+ + + L ++ + Sbjct: 442 AGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYN 501 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 + A+ G A++ +E +P + + ++ Sbjct: 502 CISALHKSMRGSDQN-----ASLYWLARMLEGGEDPLYVARRLVRFAS 544 >UniRef50_C6X3K0 ATPase, AAA family n=21 Tax=Bacteria RepID=C6X3K0_FLAB3 Length = 442 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 40/277 (14%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A++ +RPK L+E GQ + + K L D L+ L+ +GPPG GKTT+A I++ Sbjct: 23 PLAEQ-MRPKTLDEVRGQEHLTGEKGTVRKM--LENDTLNSLIFWGPPGTGKTTIAEIIS 79 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHD-------VLFIDEIHRLSPVVEEVLYPA 129 + G S V D+ ++ + + +LFIDEIHR + ++ L A Sbjct: 80 EQSGRKFFKLSA-VSSGVKDVREVIEEAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHA 138 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFG--IVQRLEFYQ 185 +E + LIGATT S + S L R +++ L + + Sbjct: 139 VEKGWI--------------------VLIGATTENPSFEVVSALLSRSQVYVLKSLSYEK 178 Query: 186 VPDLQYI-VSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + +L + + G E + + G R + V + + IS Sbjct: 179 LEELAELSLKNYNASHGTEFRIKDKEAFIQYSGGDARKLINSVENVLNNFKNSDKKEISN 238 Query: 245 DIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + L M D G + D + A I G Sbjct: 239 ADVLEVLQETMALYDKNGEQHYDI--ISAFIKSMRGS 273 >UniRef50_A5GNS9 ATPase related to the helicase subunit of the Holliday junction resolvase n=46 Tax=cellular organisms RepID=A5GNS9_SYNPW Length = 737 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 127/317 (40%), Gaps = 56/317 (17%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +ADR +RP+ L+E+VGQ + ++ + +A + D + +L++ GPPG+GKTTLA I+ Sbjct: 22 APLADR-LRPRNLDEFVGQGAILAEGRLLRRA--IAADRVGNLILHGPPGVGKTTLARII 78 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHRLSPVVEEVLYP 128 AN + + + VL DL A ++ +LFIDE+HR + ++ L P Sbjct: 79 ANHTRAHFSSLNA-VLAGVKDLRAEVSEAGQRLERHGLRTILFIDEVHRFNSAQQDALLP 137 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQV 186 +E+ L TLIGATT + L R + RL+ Sbjct: 138 WVENGTL--------------------TLIGATTENPYFEVNKALVSRSRLF-RLQALTP 176 Query: 187 PDLQYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 DL +++ + + +++ + A + A G R L D + Sbjct: 177 GDLSKLLNSALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALELAVDSTPADEN 236 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + D+ G + + DK G D ++A I R + D Sbjct: 237 GLVRIDL-------------GIAEESIQQRAVLYDK--QGDAHFDTISAFIKSIRGSDPD 281 Query: 300 VLEPYLIQQGFLQRTPR 316 +L + PR Sbjct: 282 AALFWLARMVEAGENPR 298 >UniRef50_A9U314 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U314_PHYPA Length = 498 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 123/343 (35%), Gaps = 64/343 (18%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 L+ +G +L E +A+R +RP ++ VGQ + + + ++L ++ +GPPG Sbjct: 70 LVGSGKSL-EPLAER-MRPASVDLVVGQDHLLGPRCMLRNL--IDANSLSSIIFWGPPGT 125 Query: 67 GKTTLANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPV 121 GKT+L +A + S + + + A L +L +DEIHR + Sbjct: 126 GKTSLVQTIARAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGERTLLLLDEIHRFNKA 185 Query: 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQ 179 +V P +E + LIGATT S + + L R ++ Sbjct: 186 QLDVFLPCVEAGHI--------------------VLIGATTENPSFEINAALLSRCKVL- 224 Query: 180 RLEFYQVPDLQYIVSRS---------------ARFMGLEMSDDGALEVARRARGTPRIAN 224 L Q ++ ++ R+ A +++ D +A A G R+A Sbjct: 225 TLNKLQPDHIRSLLDRAISDKEKGLMVSLAGSAAEDVIKVEQDALEFLADAADGDARVAL 284 Query: 225 RLLRRV------------RDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAV 272 L R TI AD A+A+ + ++ A+ Sbjct: 285 NTLELAGLAAFASWESTPRRPCSADKASTILADANAKAIQRSYFLFDKSGEEHYNIVSAL 344 Query: 273 IDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 I GG D AA R +E P I + ++ Sbjct: 345 IKSMRGG----DPDAAIYWLAR-MLEGGEGPLYIARRLIRFAS 382 >UniRef50_UPI0001C42F86 recombination factor protein RarA n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F86 Length = 422 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 42/291 (14%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A R +RPK +E+ +GQ + ++ + + L ++++GPPG+GKT++A + Sbjct: 4 EPLAYR-MRPKKIEDIIGQSHLVGDGKLLRRMVDV--GQLSSMILYGPPGVGKTSIATAI 60 Query: 76 ANEMGVNLRTTSGPVLEKAG-DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQ 134 A + + V K ++A + ++ +DE+HRL ++ L P +E Sbjct: 61 AGSTDTPFKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVHRLDKAKQDFLLPHLEKGL 120 Query: 135 LDIMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYI 192 + LIGATT S+ +R R I + LE D++ Sbjct: 121 I--------------------ILIGATTANPYHSINPAIRSRCQIFE-LESLTPDDIKTA 159 Query: 193 VSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRD--FAEVKHDGTIS 243 + R+ + +EM +D +A G R A L FA IS Sbjct: 160 LIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALELAVKSTFATEDGIKHIS 219 Query: 244 ADIAAQAL--DMLNVDAEGFDYMDRKLLLAVIDKFFGGPV--GLDNLAAAI 290 + A + + D +G + D L A G V GL LA + Sbjct: 220 LETAESCIQKKSFHHDKDGDAHYDV--LSAFQKSIRGSDVNAGLHYLARLL 268 >UniRef50_C8WQ98 AAA ATPase central domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ98_ALIAD Length = 447 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 110/291 (37%), Gaps = 48/291 (16%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 +A R +RP+ L+E VG + + I + + D L ++++GPPG GKTT+ Sbjct: 12 AEREAPLAYR-MRPRSLDEMVGHENLVGRDGILRRM--IERDRLMSIILYGPPGTGKTTI 68 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLE-------PHDVLFIDEIHRLSPVVEE 124 A ++A + + V D+ + V+F+DEIHR + ++ Sbjct: 69 AEVIARQTKARFIPLNA-VTSGIADVRKAVETAREERDLYARRTVVFLDEIHRFNKSQQD 127 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLE 182 L P +E L +L+GATT + + L R + RLE Sbjct: 128 ALLPHVEAGLL--------------------SLVGATTENPYFDVNAALLSRSHVF-RLE 166 Query: 183 FYQVPDLQYIV-------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 D+ +V R M + + D + +ARG R A LL A Sbjct: 167 PLSPDDIGRLVDMAIADEERGLGRMRVRLHPDARRVLTLQARGDARRALNLLELAAFAAR 226 Query: 236 VKHDG--TISADIAAQALDMLN---VDAEGFDYMDRKLLLAVIDKFFGGPV 281 V DG I AL+ D G D+ D + A I G V Sbjct: 227 VGPDGATEIGMREVEAALEASGGPRYDRAGDDHYD--TISAFIKSVRGSDV 275 >UniRef50_Q17P00 Werner helicase interacting protein n=3 Tax=Endopterygota RepID=Q17P00_AEDAE Length = 560 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 113/298 (37%), Gaps = 65/298 (21%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 +RP L +Y+GQ Q+ + + + + ++++GPPG GKTTLA+I+A Sbjct: 141 KMRPDELSDYIGQEQIIGKNTVLRTLF--EKNTIPSMILWGPPGCGKTTLAHIIAAHCKK 198 Query: 82 N----LRTTSGP-----VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 + S +++A LA + ++F+DEIHR + + +++ P +E Sbjct: 199 HGSMKFVKLSATMSGVNDVKEAVKLAKNDLAFKRKTIMFMDEIHRFNKLQQDIFLPHVES 258 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQ 190 + TLIGATT SL S L R ++ LE V + Sbjct: 259 GTI--------------------TLIGATTENPSFSLNSALLSRCRVIV-LEKLGVEAVM 297 Query: 191 YIVSRSA-----------------RFMGLE----MSDDGALEVARRARGTPRIANRLLRR 229 I+ R+ R + +S + +A G RIA L+ Sbjct: 298 KILKRALPQYKTVMFENNNRVPDIRGLPFVPRMMISAETIRWLAEICDGDARIALNSLQL 357 Query: 230 VRDFAEVKHDGT------ISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + + D IS D + + L D +G + +L+ A+ Sbjct: 358 ALNTVAARQDEEESALKRISLDEIKEGIKKSHLMYDRKGDQHY--ELISALHKSIRAS 413 >UniRef50_C5M4W5 Predicted protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M4W5_CANTT Length = 498 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 36/237 (15%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 AIRP EEYVGQ + +Q I ++ L ++ GPPG+GKTTLA++++ E + Sbjct: 30 AIRPTTFEEYVGQDHLLNQQNGSIFTF-IKLGYLPSMIFLGPPGVGKTTLASVISYECKL 88 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 S L G+L + E V+FIDEIHRL+ V ++ L P +E+ ++ Sbjct: 89 PFIELSATTLTT-GELKQIAMMHEEQIVVFIDEIHRLTKVQQDWLLPYVENGKM------ 141 Query: 142 GPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARF 199 LIGATT S + + R + L P+LQ I+ ++ ++ Sbjct: 142 --------------VLIGATTSHPSKRIRHAILSRCHVFC-LRRLATPELQIILRKAIKY 186 Query: 200 MGL---------EMSDDGALE--VARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 L E+ D E + A G RIA L+ + + DG IS Sbjct: 187 QNLKRKHVLNLPEIDYDQVCEDLILELAHGDSRIAINLVELISNNYSQTDDGRISLK 243 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 115/292 (39%), Gaps = 30/292 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPKL E VGQ V++ +K ++ + GP G GKTT+A I+A + Sbjct: 6 RKYRPKLFSEVVGQNHVKTLFLNSLKNGEIS----HAYIFAGPRGTGKTTVARILAKSLN 61 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPA-MEDYQ 134 + P + + + N DVL ID I + + E V Y A +Y+ Sbjct: 62 CENKNGVEPCNKC--NTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYK 119 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP I ATT + + R ++ + + Sbjct: 120 VYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVID-FKNLTI 178 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + + + +S + E+A+RA G R A +L +V + I+ + Sbjct: 179 EDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSS----KDITIED 234 Query: 247 AAQALDM--LNVDAEGFDYM---DRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 + L + + V E D + D K +I+K + + + EE Sbjct: 235 VRETLGLVPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEE 286 >UniRef50_C8XD35 AAA ATPase central domain protein n=21 Tax=Actinobacteridae RepID=C8XD35_NAKMY Length = 494 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 125/333 (37%), Gaps = 46/333 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A R +RP+ L+E VGQ + + ++G A +L++GPPG GKTTLA +V Sbjct: 41 APLAAR-MRPRTLDEVVGQQHLLGPGAPLRRL--VQGGAPSSMLLYGPPGTGKTTLATLV 97 Query: 76 ANEMGV---NLRTTSGPVLEKAGDLAAM---LTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 A G L S V E +A L VLFIDE+HR S ++ L A Sbjct: 98 AGSTGRFFAQLSAVSAGVKEVRAVIAEATTRLRRTGEQTVLFIDEVHRFSRTQQDSLLGA 157 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 +ED + L+ ATT S+ SPL R I+Q L+ Sbjct: 158 VEDRTI--------------------VLVAATTENPFFSVVSPLLSRSLILQ-LQPLTDT 196 Query: 188 DLQYIVSRSARFM-----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 D+ ++ R+ +++ + A G R A L + Sbjct: 197 DISELIDRAVADERGLAGAFTLAEPARAHLVALAGGDARRALTALE----ASAESVRELD 252 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + D +L +D D ++R + A + G D +A I R + D Sbjct: 253 APDSDDDPAGVLEID---LDAVERAVNRAAVRYDRSGDQHYDVTSAFIKSIRGSDVDAAL 309 Query: 303 PYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 YL + PR R A G+ P Sbjct: 310 HYLARMIEAGEDPRFIARRLMVHASEDVGMADP 342 >UniRef50_A5FMX8 AAA ATPase, central domain protein n=9 Tax=Bacteroidetes RepID=A5FMX8_FLAJ1 Length = 425 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 106/280 (37%), Gaps = 40/280 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + +A+R IRP+ LE+Y+ Q + + ++ + L+ +GPPG GKTTLA Sbjct: 1 MEAPLAER-IRPRTLEDYISQSHLVGPNGSLTQ--QISKGIIPSLIFWGPPGTGKTTLAQ 57 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLE--------PHDVLFIDEIHRLSPVVEEV 125 I+A E S + D+ ++ + + +LFIDEIHR S ++ Sbjct: 58 IIAQESKRPFYELSA-INSGVKDIRDVIEKAKQSGGLFTAKNPILFIDEIHRFSKSQQDS 116 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEF 183 L A+E + TLIGATT S + L R + L Sbjct: 117 LLAAVEKGWI--------------------TLIGATTENPSFEVIPALLSRSQVYI-LNA 155 Query: 184 YQVPDLQYIVSRSARFMG----LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + DL+ ++ R+ + ++ + R + G R + V + + Sbjct: 156 FTKDDLEALLHRAIKIDKELSSKNITLKETEALLRLSGGDGRKLLNIFELVVNASASDEI 215 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 I+ D + V + ++ A I G Sbjct: 216 -VITNDRVLALVQQNTVLYDKTGEQHYDIVSAFIKSIRGS 254 >UniRef50_D2AWQ0 Recombination factor protein RarA n=3 Tax=Bacteria RepID=D2AWQ0_STRRD Length = 436 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 125/332 (37%), Gaps = 58/332 (17%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A R +RP+ L+E +GQ + + + +A L ++GPPG GKTTLA +V Sbjct: 17 EPLAVR-MRPRGLDEVIGQRHLLGPGTPLRRL--VEAEAPMSLFLWGPPGTGKTTLAYVV 73 Query: 76 ANEMGVNL---RTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEVLYPA 129 A S V E + L VLF+DE+HR + ++ L PA Sbjct: 74 AGVTKRRFVEVSAVSAGVKEVRAAIEQARRELGMSGRQTVLFVDEVHRFNKAQQDALLPA 133 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS-PLRDRFGIVQRLEFYQVPD 188 +E+ T IGATT + ++ LE D Sbjct: 134 VENRW--------------------VTFIGATTENPFFSVISPLLSRSLLLTLESLSEDD 173 Query: 189 LQYIVSRS-ARFMGLE----MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 ++ ++ R+ A GL+ ++ + A + R A G R + L A + DG I+ Sbjct: 174 IRMVLERAVADPRGLDGKAKLAPEAAEHLVRLAGGDARRSLTYLE----AASLIADGEIT 229 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 ++ +A+D V DR+ G D ++ I R + D Sbjct: 230 VEVVERAVDKAAV------RYDRQ-----------GDQHYDVISGFIKSMRGSDADAALH 272 Query: 304 YLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 YL + PR R A G+ P Sbjct: 273 YLARMVEAGEDPRFIARRIVIFASEDVGMADP 304 >UniRef50_D2LJI0 AAA ATPase central domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI0_RHOVA Length = 455 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 107/290 (36%), Gaps = 37/290 (12%) Query: 3 EADRLISAGTTLPEDVADR----AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHL 58 E L + P +A R +RP L + +GQ + + + A G+A + Sbjct: 13 EGATLFESVPPSPAVLASRPLPDRLRPASLGDVIGQEHLLGEGGPLRRIA--DGEAPRSM 70 Query: 59 LIFGPPGLGKTTLANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFID 113 + +GPPG GKTT+A ++A G + S L K D A +LF+D Sbjct: 71 IFWGPPGTGKTTVARLMAKGAGAHFEQISAIFSGVADLRKVFDAAKDRQRFGQGTILFVD 130 Query: 114 EIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPL 171 EIHR + ++ P +ED + LIGATT S L L Sbjct: 131 EIHRFNRSQQDSFLPFVEDGTI--------------------ILIGATTENPSFELNGAL 170 Query: 172 RDRFGIVQRLEFYQVPDLQYIVSRSARFMG--LEMSDDGALEVARRARGTPRIANRLLRR 229 R ++ +++ +++R+ +G L ++ D + A G R A L Sbjct: 171 LSRAKVLV-FRRLTDDNIEQLLARAESVLGKTLPLTPDARGALIGMADGDGRTALNLTED 229 Query: 230 VRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 V +A++ + + D L+ A+ G Sbjct: 230 VFATGRDPSHPIDTAELTEIVQRRAPLYDKNRDG-HYDLISALHKAVRGS 278 >UniRef50_Q75JU2 ATPase WRNIP1 n=2 Tax=Eukaryota RepID=WRIP1_DICDI Length = 876 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 60/322 (18%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 +RP L +++GQ + I K + L +++GPPG GKTTLA IVA++ Sbjct: 200 QMRPTELSDFIGQESLLVGDPIVKKLF--QSPELPSFILYGPPGCGKTTLAQIVASKSNY 257 Query: 82 NLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 N+ S +++ D A +LFIDEIHR + + ++VL PA+E + Sbjct: 258 NINALSAVGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIESGII- 316 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVS 194 LIGATT S L L R + ++E +L+ ++ Sbjct: 317 -------------------ILIGATTENPSFELNGALLSRCKVF-KMEKLTKENLETLIK 356 Query: 195 RSARFMG------LEMSDDGALEVARRARGTPRIANRLLRRVRD-------FAEVKHDGT 241 R+ L M +D +A A G R+A +L + E + Sbjct: 357 RTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANKEEQTYKERMEEKH 416 Query: 242 ISADIAAQAL---DMLN--------VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI 290 ++ I + + + +G D +L+ A+ G Sbjct: 417 STSGIVRDIVLTKKQMGSLLQRTSLIYDKGGDAF-YELISALHKSVRGSDANATAYWVI- 474 Query: 291 GEERETIEDVLEPYLIQQGFLQ 312 +E EP I + ++ Sbjct: 475 ----RMLESGCEPLYIVRRMVR 492 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 117/291 (40%), Gaps = 34/291 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK +E VGQ + ++ IK K+ L G G GKT++A I A + Sbjct: 7 RKYRPKSFKEVVGQEHIVKTLKNQIKLNKIG----HAYLFTGTRGTGKTSVAKIFAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 T P ++ + N DVL ID ++ + + E V+Y P+ Y+ Sbjct: 63 CLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT L + R QR +F ++ Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSR---CQRFDFKRI 177 Query: 187 PD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 P + + R G+++ + G +A G+ R A LL + + E G I+ Sbjct: 178 PTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKE----GLITY 233 Query: 245 DIAAQALDMLN--VDAEGFDYMDRKLL---LAVIDKFFGGPVGLDNLAAAI 290 + + L + N V DYM+ K + L +DK + + N ++ Sbjct: 234 EDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSL 284 >UniRef50_B1HUL5 Putative uncharacterized protein n=4 Tax=cellular organisms RepID=B1HUL5_LYSSC Length = 420 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L+E VG K ++ + + +L++G PG+GKT++AN +A + Sbjct: 1 MRPLTLDEIVGHQDFIGPNTALYKM--IQNEHVPSMLLYGEPGIGKTSIANAIAGSSQLP 58 Query: 83 LRTTSGP-VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 + +K + + +LF+DEIHR + + ++ L P +E+ + Sbjct: 59 FFALNATRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVENGSI------ 112 Query: 142 GPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSA-- 197 LIGATT + +R R G + +L+ +L +V ++ Sbjct: 113 --------------VLIGATTENPYHDVNPAIRSRCGEIYQLKRLTKENLMELVEKALAD 158 Query: 198 --RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD-IAAQAL 251 R +G ++D +A A G R A LL + ++ TI+AD I + Sbjct: 159 EKRGLGKYHFILTDSQIERIAEAANGDARKALTLLESIYYASDEVEGPTIAADHIIDHLI 218 Query: 252 DMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + V + LL A+ G Sbjct: 219 SRIGVYGDKKGSHFYNLLSALQKSVRGS 246 >UniRef50_Q6MPI4 ATPase, AAA family n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPI4_BDEBA Length = 449 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 114/315 (36%), Gaps = 58/315 (18%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S + +++ +RPK L++ GQ + + LR L L+I+GPPG GK Sbjct: 19 SQASHGTSPLSEI-LRPKTLDDIFGQQKTLGPQSKLGQM--LRKGYLPSLIIWGPPGTGK 75 Query: 69 TTLANIVANEMGVNLRTTSG-----PVLEKAGDLAA-MLTNLEPHDVLFIDEIHRLSPVV 122 TT A ++ + + L + G+ + +LF+DEIHR + Sbjct: 76 TTFALALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQKTILFVDEIHRFNKAQ 135 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQR 180 ++VL P +E L L+GATT S L L R +V Sbjct: 136 QDVLLPFVEKGDL--------------------VLVGATTENPSYELNRALLSRCRVVI- 174 Query: 181 LEFYQVPDLQYIVSRS----ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 E DL IV R+ A+ + +++D + + G R L + F + Sbjct: 175 FERLSEDDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKD 234 Query: 237 KHDG-TISADIAAQALDM--LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 + +G + + + L L D + D ++A I Sbjct: 235 EVEGPLLDVNDMRELLQQNPLGYDK-------------------NSEMHYDTISAFIKSI 275 Query: 294 RETIEDVLEPYLIQQ 308 R + D YL + Sbjct: 276 RGSDPDAAMYYLARM 290 >UniRef50_A6QR70 Werner helicase interacting protein 1 n=6 Tax=Amniota RepID=A6QR70_BOVIN Length = 638 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 128/375 (34%), Gaps = 89/375 (23%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +AD +RP L+++VGQ + + + L + L+++GPPG GKTTLA+I+A Sbjct: 199 PLAD-TMRPDALQDFVGQGRAVGPETLLR--SLLEASEVPSLILWGPPGCGKTTLAHIIA 255 Query: 77 NEMG------VNLRTTSGPVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEEVLY 127 N V L TS + + + +LFIDEIHR + ++ Sbjct: 256 NNSKKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFL 315 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQ 185 P +E + TLIGATT S + + L R ++ LE Sbjct: 316 PHVECGTI--------------------TLIGATTENPSFQVNAALLSRCRVIV-LEKLP 354 Query: 186 VPDLQYIVSRSARFMGLE------------------------MSDDGALEVARRARGTPR 221 V + I+ R+ +G++ + D +A + G R Sbjct: 355 VEAVVTILMRAVNSLGIQVLDSSRPADPLSHGGNSSSESSVLIEDKAVDTLAHLSDGDAR 414 Query: 222 IANR-----LLRRVRDFAEVKHDG---------TISADIAAQALDMLNVDAEGFDYMDRK 267 +L R+ G ++ + L ++ + Sbjct: 415 AGLNGLQLAVLARLSARKTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYN 474 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRG---------- 317 + A+ G +AA+ +E +P + + ++ Sbjct: 475 CISALHKSMRGSDS-----SAALYWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALT 529 Query: 318 -RMATTRAWNHFGIT 331 +AT + + G+ Sbjct: 530 QAVATYQGCHFIGMP 544 >UniRef50_C5MFE6 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MFE6_CANTT Length = 698 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 118/307 (38%), Gaps = 48/307 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L+++ GQ ++ + ++ D + L++G PG+GKT+LA I+A Sbjct: 166 LRPKTLDDFFGQEKLLGKDGALRNM--IQSDIIPSFLLWGVPGIGKTSLARIIAKNSRCK 223 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPH-------DVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 SG + A +L + E H +LF+DEIHR + V+++L P +E Sbjct: 224 FVELSG-IDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVIEKGI- 281 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIV 193 T+IGATT S L + L R +E L I+ Sbjct: 282 -------------------VTVIGATTENPSFNLNNALLSRVHTFV-MEPLNTESLIKIL 321 Query: 194 SRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 +R+ + + + D +A + G R+A +L + + I Sbjct: 322 TRALFEVNRIRKKLYGFHYISLQKDAYHYIANLSMGDSRVALNILETLNAYLSADKFK-I 380 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF-FGGPVGLDNLAAAIGEERETIEDVL 301 + + ++ V A+ + + + G D ++A R + + Sbjct: 381 DNNDTSPKQGVIKVSADLLKPLLKT--RNFHQMYDRNGDSHYDIISAFHKSIRGSDPNAA 438 Query: 302 EPYLIQQ 308 YL++ Sbjct: 439 MFYLVKM 445 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 RA RP+ ++ VGQ + ++ I R D + H +F GP G GKTT A ++A + Sbjct: 8 RAWRPQTFQDMVGQRHIIQTLQNAI-----REDRVSHAYLFNGPRGTGKTTAAKVLAKAV 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDY 133 P E D +T DV+ ID I + + ++V Y P+ Y Sbjct: 63 NCERGPAEEPCNEC--DACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYAPSEVRY 120 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + E A ++ PP I ATT L + + R Sbjct: 121 KVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQRFD-FRQVS 179 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF--AEVKHDGTIS 243 + + + R G+E +D +AR + G R A LL +V F + + DG + Sbjct: 180 LEEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAFGGSRITLDGAVD 239 Query: 244 A 244 Sbjct: 240 V 240 >UniRef50_B2KBM0 AAA ATPase central domain protein n=2 Tax=Elusimicrobia RepID=B2KBM0_ELUMP Length = 416 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 43/282 (15%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 A+ PK L+++ GQ V + + + D + + FGPPG+GKT LA +A++ Sbjct: 13 AMAPKNLDDFAGQKHVIGPGRMLRRM--IESDTIKSAVFFGPPGVGKTALARFIASKTEA 70 Query: 82 NLRTTSG-----PVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 + ++K + A N LE ++ +DEIH + ++VL P++E Sbjct: 71 VTVELNAAAAGVGDIKKVIEEAKERRNDTFLEKRTLVVLDEIHHFNKTQQDVLLPSVERG 130 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQY 191 + LIG TT + + L RF + + + DL+ Sbjct: 131 DI--------------------ILIGLTTENPYFYINNALLSRFSVFE-FKPLDAKDLEQ 169 Query: 192 IVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG--TISADIAAQ 249 I+ R + ++ D +A G R + DG I+ D+A + Sbjct: 170 ILKRVLKIKEAKIQKDAKDFFITQANGDARRLLNAVDLAILTTAKDSDGIVNITMDVAKE 229 Query: 250 ALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 + LN D +G ++ D VI F G D AA Sbjct: 230 CMQKRHLNYDKKGDEHYD------VISAFIKSMRGSDPDAAV 265 >UniRef50_C0BGA7 AAA ATPase central domain protein n=4 Tax=Bacteroidetes RepID=C0BGA7_9BACT Length = 425 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 108/279 (38%), Gaps = 44/279 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RPK L EY GQ + + + L+ +GPPG GKTTLA ++A Sbjct: 4 PLAER-MRPKSLGEYFGQDHLVGPKGSLTQM--ISNGVFPSLIFWGPPGTGKTTLAQLLA 60 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLE--------PHDVLFIDEIHRLSPVVEEVLYP 128 E S + ++ +++ E +LFIDEIHR S ++ L Sbjct: 61 LEKERPFYQLSA-INAGVKEIREIISKAEHSGGLFSGKSPILFIDEIHRFSKSQQDSLLN 119 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQV 186 A+E + TLIGATT S + + L R + L + Sbjct: 120 AVEKGII--------------------TLIGATTENPSFEVINALLSRCQVYV-LNTLKK 158 Query: 187 PDLQYIVSRSARFMGL----EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 DL+ I++ + + ++ + A G R LL V A K + Sbjct: 159 EDLEKILNHALEKDSIIKEYKIQLKETEALIELAGGDARKLLSLLELVIQ-ANSKEKLIL 217 Query: 243 SADIAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGG 279 + D+ + + +V D G + D + A I G Sbjct: 218 TNDLVFETVQTNSVLFDKNGDFHYDI--VSAFIKSIRGS 254 >UniRef50_A7NI76 AAA ATPase central domain protein n=22 Tax=Bacteria RepID=A7NI76_ROSCS Length = 544 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 110/286 (38%), Gaps = 41/286 (14%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 + +A R +RP+ L+E+VGQ + + ++ +A + DAL ++++GPPG GKTT Sbjct: 16 ALSRQAPLAAR-MRPRALDEFVGQDHIVGEGKLLRRA--ITNDALFSIILWGPPGSGKTT 72 Query: 71 LANIVANEMGVNL---RTTSGPVLE---KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 LA I+A+ + S V + + L + ++FIDEIHR + ++ Sbjct: 73 LARIIADTTHAHFEQLSAVSAGVADLRRVVKEAQDRLGMFQQRTIVFIDEIHRFNKAQQD 132 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLE 182 + P +ED + LIGATT S + LR R + LE Sbjct: 133 AILPYVEDGTI--------------------ILIGATTENPSFEVNPALRSRARVFV-LE 171 Query: 183 FYQVPDLQYIVSRS-------ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + IV R+ + + ++ D + + G R A L Sbjct: 172 SLTDEQIGVIVDRALTDAERGLGALNVLLAADARGYLINMSNGDARTALNALEAAALAKS 231 Query: 236 VKHDGT--ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 G ++ D AL V + + + A+ Sbjct: 232 PGIGGKRLLTVDDIRDALQSRAVQYDKNGELHYDAISALHKSVRDS 277 >UniRef50_Q8RGJ6 ATPase associated with chromosome architecture/replication n=9 Tax=Fusobacterium RepID=Q8RGJ6_FUSNN Length = 407 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 120/305 (39%), Gaps = 42/305 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A +RPK L+++VGQ ++ + + + + L + + +GPPG GK++L I+ Sbjct: 12 EPLA-YKLRPKSLDDFVGQEKLLGKDGVITRL--ILNSTLSNSIFYGPPGCGKSSLGEII 68 Query: 76 ANEMGVNL---RTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEVLYPA 129 +N + N T+ V + + N+E +LF+DEIHR + ++ L Sbjct: 69 SNTLDCNFEKLNATTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSY 128 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 ED L TLIGATT ++ + L R + + + Sbjct: 129 TEDGTL--------------------TLIGATTENPYYNINNALLSRVMVFE-FKALTNE 167 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 D+ ++ + F+ + M D + ++G RIA + + + I + Sbjct: 168 DILKLIDKGLNFLNICMGDKIKEIIVDISQGDSRIALNYVEMYNNIHSQMSEDEIFSIFK 227 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQ 307 + + + D D +I F G D AA R Y+ + Sbjct: 228 ERQVSF----DKKQDKYD------MISAFIKSIRGSDPDAAVYWLARLLDGGEDPKYMAR 277 Query: 308 QGFLQ 312 + F++ Sbjct: 278 RLFIE 282 >UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 Tax=Staphylococcus RepID=B9DLF5_STACT Length = 583 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 25/231 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ V + I +G + GP G GKT++A + A + Sbjct: 8 RMYRPQSFDDVVGQEHVTKTLRNAIA----KGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI--------DEIHRLSPVVEEVLYPAMED 132 P E D+ +T DV+ I DEI + V P+ Sbjct: 64 CPNSVDGEPCNEC--DICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKV--KYAPSQSK 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + R + Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD-FKAI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + + + A +E D+ +A+ + G R A ++ + F + Sbjct: 179 GLDQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGD 229 >UniRef50_Q1D8G6 ATPase, AAA family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D8G6_MYXXD Length = 444 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 45/290 (15%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S +A+R +RP+ +E++GQ + + + A+ L +GPPG+GK Sbjct: 11 SVDVNRFAPLAER-MRPRTPDEFIGQSHLLGPGRPLRQL--IERKAIVSSLFWGPPGVGK 67 Query: 69 TTLANIVANEMGVNLRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 TTLA ++A + S + E + + VLF+DEIHR + V Sbjct: 68 TTLARMMATGVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDEIHRWAKNV 127 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQR 180 +E P +E F L+GATT S + L R + Q Sbjct: 128 QEQALPHVESGL--------------------FVLLGATTENVSFEVRPALVSRCRVFQ- 166 Query: 181 LEFYQVPDLQYIVSRS-------ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 L+ V D+Q ++R+ L + + +A+ G R A L Sbjct: 167 LKELTVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGGVGDVRKALGALELAASL 226 Query: 234 AEVKHDGTISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPV 281 I+ + A +A+ + D +G + D LL A+ G V Sbjct: 227 TA--DGAEITPETAREAVGTSLSRHDKDGDQHYD--LLSALQKSCRGSNV 272 >UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Tax=Veillonellaceae RepID=C9KLC0_9FIRM Length = 631 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 29/253 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ + + I + + L GP G GKT+ A I+A + Sbjct: 8 RKWRPQTFKDLVGQEHISRTLANAITSGHIG----HAYLFAGPRGTGKTSTAKILAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVE-------EVL 126 GP E G + + DV ID I + + E + Sbjct: 64 CE----HGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGR 119 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y ++ ++ E A ++ PP I ATT A + ++ R + Sbjct: 120 YKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYD-FKRI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V +++ + M +E D+ +A +A G R A +L + AE GTI+A Sbjct: 179 TVEEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAE----GTITA 234 Query: 245 DIAAQALDMLNVD 257 + Q L ++ D Sbjct: 235 ERVRQILGLVGHD 247 >UniRef50_O13984 ATPase WRNIP1 homolog C26H5.02c n=1 Tax=Schizosaccharomyces pombe RepID=WRIP1_SCHPO Length = 504 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 114/312 (36%), Gaps = 49/312 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+RA RPK L+EYVGQ ++ + I + D + ++++G G GKTTLA ++A Sbjct: 85 PLAERA-RPKSLDEYVGQEELVGERGIIRNL--IEQDRCNSMILWGSAGTGKTTLARLIA 141 Query: 77 NEMGVNLRTTSGP------VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 S + D LT ++F+DE+HR + +++ P + Sbjct: 142 VTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMV 201 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 E TLIGATT S L S L R + L+ + Sbjct: 202 EKGL--------------------VTLIGATTENPSFRLNSALISRCPVFV-LKKLTRDN 240 Query: 189 LQYIVSRSARFMGL-------EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ I++ + + ++ G R+A L ++ Sbjct: 241 VKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDARMALNALE--MSIGMLRQGPL 298 Query: 242 ISADIAAQALDMLN-VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 DI + + D G + D + A G V D +G E+ ED Sbjct: 299 SLEDIKDKLVRSSALYDRVGDVHYD--TISAFHKSVRGSDV--DATLYYLGRMLESGED- 353 Query: 301 LEPYLIQQGFLQ 312 P + + ++ Sbjct: 354 --PLYVARRMVR 363 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 32/255 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ EE VGQP V ++ I+++++ L G G+GKT++A I+A Sbjct: 5 VIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRI----AHSYLFTGARGVGKTSIARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAME 131 + T P + + DVL ID I + + E V Y PA Sbjct: 61 ALNCETGVTPTPCNVCSN--CTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYRPAKS 118 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + E A ++ PP I ATT + + + R QR +F Sbjct: 119 RYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSR---CQRFDF 175 Query: 184 YQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++P L + A + +S+ +AR A G+ R A LL ++ F+ DG Sbjct: 176 RRIPSHMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSR---DGL 232 Query: 242 ISADIAAQALDMLNV 256 ++ LD+L V Sbjct: 233 SDEEV----LDVLGV 243 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 22/258 (8%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ +E VGQ V ++ I ++ L GP G GKTT A I+A + Sbjct: 8 REWRPQSFQELVGQEHVSRTLQNAIAYQRI----AHAYLFCGPRGTGKTTTAKILAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 + P + + HDVL ID + + + E+V Y E +Y+ Sbjct: 64 CSGHGPVRPCNDCLN--CRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGNYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP + ATT + + + R V Sbjct: 122 VYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFD-FRRLGV 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD-GTISAD 245 ++ + R R + S + +AR+A G R A +L + +A + D G ++A Sbjct: 181 NEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGDVTAI 240 Query: 246 IAAQALDMLNVDAEGFDY 263 + A A ++L +G Sbjct: 241 LGAVADEILYDMTQGLAE 258 >UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S3_COPPD Length = 522 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 109/300 (36%), Gaps = 41/300 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ EE VGQ V + + K+ L GP G GKT+ A I A + Sbjct: 5 RKYRPQTFEEVVGQSHVTEILTKALDNQKIS----HAYLFAGPKGSGKTSCARIFAKGLN 60 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 TS P E + ++ DV+ ID + + + E V Y PA Y+ Sbjct: 61 CETGITSKPCNEC--ESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSRYK 118 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP I ATT + + R R + Sbjct: 119 VYIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRF-RFKKLTS 177 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ I+ + G + +A + G R A LL ++ V +G +S Sbjct: 178 DEVFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQI----SVVDEGKVSIKT 233 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A L+++ D +L + F ++ LA E +E +EP + Sbjct: 234 ARFLLNVVE---------DEVILDLLKTAFADMDEAVERLA-------ELMESGVEPMEL 277 >UniRef50_C7NB61 AAA ATPase central domain protein n=12 Tax=Fusobacteriaceae RepID=C7NB61_LEPBD Length = 409 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 38/265 (14%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RPK L+++ GQ ++ + I K + + + +G PG GKTTLA I++N+M + Sbjct: 18 YRPKSLDDFYGQKRLVGENGILRKI--IERGNFMNAIFWGAPGTGKTTLAEIISNKMNYH 75 Query: 83 LRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 + + E + A +LF+DEIHR + + ++ L +E+ + Sbjct: 76 YEYLNAIKASVADIKEISEKAANRFHMNGQQTLLFLDEIHRFNKLQQDSLLQDLENGNI- 134 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQYIVS 194 LIGATT +L + L R + + +L I+ Sbjct: 135 -------------------ILIGATTENPYYNLNNALLSRCLAFE-FKKLSEKNLMEILK 174 Query: 195 RSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDML 254 +SDD ++ G R A +L + + + + + L+ Sbjct: 175 NINEKENFGISDDILEYISEIIEGDARQAINILELITNVGV-----EFTLEEVKEILNTK 229 Query: 255 NVDAEGFDYMDRKLLLAVIDKFFGG 279 + D + + A+I G Sbjct: 230 KSYHKTEDKYN--TISAMIKSIRGS 252 >UniRef50_UPI0000D57862 PREDICTED: similar to werner helicase interacting protein n=1 Tax=Tribolium castaneum RepID=UPI0000D57862 Length = 494 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 127/347 (36%), Gaps = 64/347 (18%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV---- 75 + ++PK L++++GQ V + + L + +++++GPPG GKT+L+ ++ Sbjct: 95 AKQLQPKCLDDFMGQSHVLGENTVLRTL--LEKGDIPNMVLWGPPGCGKTSLSGVIQGIC 152 Query: 76 -ANEMGVNLRTTSGPV-----LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 +N + + ++ A + VLF+DEIHR + +++ Sbjct: 153 KSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFGCRTVLFMDEIHRFNKKQQDIFLLH 212 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +E + L+GATT S + S L R ++ L+ Sbjct: 213 VEKGDI--------------------ILVGATTENPSFTVNSALLSRCRVIV-LQKLDPD 251 Query: 188 DLQYIVSRSARFMGLEMSD------------DGALEVARRARGTPRIANRLLRRVRDFAE 235 L I+ R AR +E+ D D +A + G RIA L+ V + E Sbjct: 252 CLYQILERGARNFNVEVVDKGARSKGFAVQADALKWLADISDGDARIALGNLQLVLQYNE 311 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 K+ ++ + + + ++ + ++ A+ G AA+ Sbjct: 312 DKN-KVVTIEDIKEKIKKSHLLYDRKGEEHYNVISAMHKSIRGSDPN-----AALYWTTR 365 Query: 296 TIEDVLEPYLIQQGFLQRTPRGR-----------MATTRAWNHFGIT 331 I +P I + ++ ++T + G+ Sbjct: 366 MIVSGEDPLYIARRMVRAASEDIGNADPRALQLAVSTMQGCQLLGMP 412 >UniRef50_D1B0W0 AAA ATPase central domain protein n=5 Tax=Campylobacterales RepID=D1B0W0_SULD5 Length = 396 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 34/265 (12%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RPK++EE GQ + + F K L+ ++ H L FGP G+GKTTLA IVAN + + Sbjct: 9 FRPKVIEELSGQKHLSGENSPFRKL--LKSGSMSHALFFGPAGVGKTTLARIVANTLQLP 66 Query: 83 LRTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 + K ++ +L+ ++FIDEIHRLS +EVL ME+++ Sbjct: 67 FYELDATSI-KVEEIRKILSQHRGALQKPLIFIDEIHRLSKTQQEVLLLPMENHEA---- 121 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSA 197 +IGA+T L+S +R R + + ++ D++ I+ R Sbjct: 122 ----------------IVIGASTENPYFVLSSGIRSRMMLFE-FYPLEMKDMEAILERVH 164 Query: 198 RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVD 257 + ++ ++ + R + G R LL +K D ++ D Sbjct: 165 EKIEFQIDEEAREYLIRSSAGDSRSFLNLLE-----FALKVDLHVNMQTLKALRPSALKD 219 Query: 258 AEGFDYMDRKLLLAVIDKFFGGPVG 282 D L+ A+I G V Sbjct: 220 GVSSDNTHYNLISAMIKSVRGSDVD 244 >UniRef50_C6NSC7 ATPase, AAA family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC7_9GAMM Length = 437 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 126/317 (39%), Gaps = 52/317 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A R +RP+ L E++GQ ++ AA LR +L L+ +GPPG+GKTTLA+++A Sbjct: 8 PLAAR-MRPRSLAEFIGQERLLGPAGPI--AAMLRQKSLHSLVFWGPPGVGKTTLAHLLA 64 Query: 77 NEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 E G + T S L A +A VLFIDEIHR + ++ L P +E Sbjct: 65 AEQGAEVLTLSAVDSGVRELRAAAAVATERRGRGESTVLFIDEIHRFNKTQQDALLPHLE 124 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDL 189 + L TLIGATT S L L R + LE L Sbjct: 125 EGTL--------------------TLIGATTENPSFALVGALLSR-IRIYVLEPLGQEAL 163 Query: 190 QYIVSRSAR-------FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH---- 238 I+ RS + +E+ D ++ +A G R +L A + Sbjct: 164 AAILERSLHDRERGLGDLAVELPDSARAQLLAQADGDARRLLNILDLAVQLAPLHDGRRR 223 Query: 239 -DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 D + A A QA D G + D + A+ G V A++ + Sbjct: 224 LDTPVLAAAAGQAWRHF--DKGGEHFYDE--ISALHKSLRGSDVD-----ASLYWLARML 274 Query: 298 EDVLEPYLIQQGFLQRT 314 + +P + + ++ Sbjct: 275 DGGADPLYLARRLIRVA 291 >UniRef50_UPI000192574D PREDICTED: similar to Werner helicase interacting protein 1 n=1 Tax=Hydra magnipapillata RepID=UPI000192574D Length = 527 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 123/324 (37%), Gaps = 60/324 (18%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A++ +RP + + GQ + + +K + + + L+++GPPG GKT+ A+I++ Sbjct: 110 PLAEQ-MRPNNFDNFYGQNSFGA--KNLLKELFV-SNKIPSLILWGPPGCGKTSFAHIIS 165 Query: 77 NEMG--------VNLRTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHRLSPVVEEV 125 V L T + + ++ + VLFIDEIHR + + ++ Sbjct: 166 RRCKESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKTVLFIDEIHRFNKMQQDT 225 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEF 183 P +ED + LIGATT S + + L R +V Sbjct: 226 FLPYVEDGTI--------------------VLIGATTENPSFYINNALISRCHVVV-FNS 264 Query: 184 YQVPDLQYIVSRSARFMG--------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + + I+ + + + VA+ A G R A L + + Sbjct: 265 LETEVILKILQNAIELLNETDQEVAKCRFEEGALNLVAQYANGDARCALNKLDMILQAKK 324 Query: 236 -----VKHDGTISADIAAQALD--MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 + + IS ++ + L +N D G ++ + L+ A+ G V A Sbjct: 325 ESIHVSQANSQISCELIREELQRCCVNYDKAGDEHYN--LISALHKSIRGSDVD-----A 377 Query: 289 AIGEERETIEDVLEPYLIQQGFLQ 312 +I +E +P I + ++ Sbjct: 378 SIYWLARMLEGGEKPLYIARRLIR 401 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 29/254 (11%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ +E V QP + ++ I + L + GP G GKTT+A I+A Sbjct: 5 VLARKYRPQTFDEVVAQPHITETLKNAIN----QERVAHALCLSGPRGTGKTTVARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 M +GP E G A+ + DV ID + ++ + E V Y PA Sbjct: 61 AMNC----VNGPTPEPCGVCASCKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYAPA 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + +Y++ I + A ++ PP I ATT + + + R Sbjct: 117 LGNYKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYD-F 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + D+ +++ A + + VARR+ G R A LL +V ++ G Sbjct: 176 KRISLDDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYST----GE 231 Query: 242 ISADIAAQALDMLN 255 S + L + Sbjct: 232 ASFEKVLDILGVAG 245 >UniRef50_UPI0000E4A039 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A039 Length = 672 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 108/292 (36%), Gaps = 67/292 (22%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP ++ +GQ + + + + ++ +GPPG GKT+LAN++A Sbjct: 271 PLAER-MRPYTMDTLIGQNKALGATGTLRRLLDVGN--IPSMIFWGPPGCGKTSLANVIA 327 Query: 77 NEMGVN----LRTTSGPV-----LEKAGDLAAMLTNL-EPHDVLFIDEIHRLSPVVEEVL 126 + V T S ++ A ++A + +LFIDEIHR + ++ Sbjct: 328 RQAKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYRRKTILFIDEIHRFNKTQQDTF 387 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFY 184 +E+ + LIGATT S + S L R +V LE Sbjct: 388 LLHVENGTI--------------------ILIGATTENPSFRVNSALLSRCRVVV-LEKL 426 Query: 185 QVPDLQYIVSRSAR-----------------FMGLEMSDDGALEVARRARGTPRIANRLL 227 + I+ R+ + + + + +A G R A L Sbjct: 427 SPESIMLILERALKEGQVGIENAEHLHKTCWSTTISIEREALCLLANLCDGDARSALNSL 486 Query: 228 RRVRDFAEVKHDG------------TISADIAAQALDMLNV--DAEGFDYMD 265 + V D A+ G I+ D +L ++ D G ++ + Sbjct: 487 QMVLDVAKGSTGGQQADASKVLRSSVITIDQIRDSLQRSHISYDKSGEEHYN 538 >UniRef50_Q043K3 Helicase subunit of the Holliday junction resolvase related ATPase n=11 Tax=Lactobacillus RepID=Q043K3_LACGA Length = 429 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 39/282 (13%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 + + +AD IRPK L ++VGQ + + + ++ LL++GPPG GKT+LA Sbjct: 5 PIKKPLADL-IRPKDLSQFVGQKDLIEEGRPLYQI--IKKHVPISLLLWGPPGTGKTSLA 61 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 I+A E L T + + KA + T VL IDEIHR++ +++ L P +E+ Sbjct: 62 QIIAREFDYPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIHRMTTTLQDFLLPYLEN 121 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQ 190 ++ LIGATT S+ +R R I + + D++ Sbjct: 122 GRI--------------------LLIGATTENPIMSIVPAVRSRCQIFE-FKALSDEDIE 160 Query: 191 YIVSRSARFM----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ R+ + + + +A A G R+A LL + E + + Sbjct: 161 QVLIRALKEVFHFKDENIDRKAVKIIAISADGDLRVALNLLETIHAVNEDLSVEEVKQFV 220 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 Q D + + D + + G D AA Sbjct: 221 KGQHFA---YDRKATKHYDY------LAAYSDSIAGSDTDAA 253 >UniRef50_A0Q7R7 AAA family-ATPase n=19 Tax=Francisella RepID=A0Q7R7_FRATN Length = 412 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 51/336 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A R IRP+ ++E VGQ + SQ I K L GD + L++ G PG+GKT+LA I+A Sbjct: 5 PLAAR-IRPQSIDEIVGQEHLLSQHGILTKI--LAGDGICSLVLCGKPGVGKTSLARIIA 61 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMEDYQ 134 + + S V D+ ++T+ + D VLF+DEIHR + +++L P +E + Sbjct: 62 SSKKLEFFELSA-VDSGVKDIKKLITDNQHLDSFVLFLDEIHRFNKSQQDILLPYVESGK 120 Query: 135 LDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYI 192 + LIGATT + L L R + RL+ + Q + Sbjct: 121 I--------------------ILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKL 159 Query: 193 VSR------SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + ++ D + + G R LL R+ + + ++ ++ Sbjct: 160 IEKTLSQDEVLAKHKFKIDDGLYNSMHNYSEGDCRKILNLLERMFLISTRGDEIYLNKEL 219 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 QA+ + D + L A G D AA +++ ++P +I Sbjct: 220 FDQAVGETSRDFHREGKEFYEQLSAFHKSVRGT----DPDAAIFWLSV-MLDNGVDPLVI 274 Query: 307 QQGFLQRTPRG---------RMATTR--AWNHFGIT 331 + L R+A A+ G+ Sbjct: 275 ARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 310 >UniRef50_Q50739 Uncharacterized AAA domain-containing protein Rv2559c/MT2636 n=53 Tax=Bacteria RepID=Y2559_MYCTU Length = 452 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 56/337 (16%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 G + +A R +RP L+E VGQ + + + + G + ++++GPPG GKTT Sbjct: 24 GASAGAPLAVR-MRPASLDEVVGQDHLLAPGSPLRRL--VEGSGVASVILYGPPGSGKTT 80 Query: 71 LANIVANEMGVNL---RTTSGPVLEKAGDLAAMLTNL--EPHDVLFIDEIHRLSPVVEEV 125 LA +++ G S V E + L VLFIDE+HR S ++ Sbjct: 81 LAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDA 140 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT--SPLRDRFGIVQRLEF 183 L A+E L+ ATT S + +PL R I+Q L Sbjct: 141 LLSAVEHRV--------------------VLLVAATTENPSFSVVAPLLSRSLILQ-LRP 179 Query: 184 YQVPDLQYIVSRSA---RFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 D + +V R+ R +G + ++ + + + A G R A V A Sbjct: 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTA-LEVAAEAAQAA 238 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 +S +++D V DR G D ++A I R + Sbjct: 239 GELVSVQTIERSVDKAAV------RYDRD-----------GDQHYDVVSAFIKSVRGSDV 281 Query: 299 DVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 D YL + PR R A G+ P Sbjct: 282 DAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGP 318 >UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfitobacterium hafniense RepID=B8FY14_DESHD Length = 554 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 118/326 (36%), Gaps = 34/326 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK ++ VGQ V + A ++ L GP G GKTT A ++A + Sbjct: 8 REWRPKNFKDMVGQDHVTKTLTN----ALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALN 63 Query: 81 VNLRTTSGPVLEKAGDL------AAMLTNLEPHDVLFIDEIHRLSPVVE----EVLYPAM 130 R P + A L A + ++ IDEI L V E Y Sbjct: 64 CEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVY 123 Query: 131 EDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPD 188 ++ ++ E A ++ PP I ATT + + R VQR EF+++P Sbjct: 124 IIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSR---VQRFEFHRIP- 179 Query: 189 LQYI---VSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 L+ I + + + +G ++ + +A+++ G R A +L + DG + + Sbjct: 180 LEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL-----DGKLGVE 234 Query: 246 IAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYL 305 Q L M+ + +L+ ++ + +G G + I L Y+ Sbjct: 235 QVYQVLGMVG------EEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYM 288 Query: 306 IQQGFLQRTPRGRMATTRAWNHFGIT 331 Q T H Sbjct: 289 RQALLYASTQAFPQVAPHLREHLAYQ 314 >UniRef50_Q6CD04 YALI0C05038p n=2 Tax=cellular organisms RepID=Q6CD04_YARLI Length = 626 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 42/231 (18%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP+ L++ GQ ++ + + F+ ++ ++ +GPPG+GKTTLA I+A G Sbjct: 130 RPQTLDDISGQKELMAVLRRFVAYGRI-----PSIIFWGPPGVGKTTLARILAKTSGNRF 184 Query: 84 RTTSGPVLEKAGDLAAMLTN-------LEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 S D+ ++ L+ +LFIDE+HR S ++VL PA+E + Sbjct: 185 VELSAT-QNNVADVKKVIDQANNEWKLLKRGTILFIDELHRFSKAQQDVLLPAVEKGDI- 242 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVS 194 TLIGATT S L L R ++ L+ + D++ +V Sbjct: 243 -------------------TLIGATTENPSFRLVGALTSRCRVL-TLKKLSMKDIKEVVE 282 Query: 195 RSARFMG------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 RS + + + +A A G R A +L V ++ + Sbjct: 283 RSLVKYNDTAEHEVILPTEVIDYIAGIADGDVRSALNILELVVSVCDIVEE 333 >UniRef50_Q6A8J0 Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase n=8 Tax=Actinobacteridae RepID=Q6A8J0_PROAC Length = 461 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 127/342 (37%), Gaps = 56/342 (16%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 S T P+ +RP+ ++E VGQ + + + A G + ++GPPG+GK Sbjct: 21 SLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLA--EGTGAMSVFLWGPPGVGK 78 Query: 69 TTLANIVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 TT+A++V++ S + + D A L VLF+DE+HR S + Sbjct: 79 TTIASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQ 138 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS-PLRDRFGIVQRLE 182 +VL PA+E+ TLI ATT S + ++ L+ Sbjct: 139 DVLLPAVENRT--------------------VTLIAATTENPSFSVISPLLSRSLLLTLK 178 Query: 183 FYQVPDLQYIVSRSA---RFMGLE------MSDDGALEVARRARGTPRIANRLLRRVRDF 233 D+ ++ R+ R + E + DD ++ + A G R A L Sbjct: 179 PLTEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAG 238 Query: 234 AEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 A TI++ I + A+D V DR G D ++A I Sbjct: 239 ASAAGTDTITSQIVSTAVDRAAV------RYDRD-----------GDQHYDVISAFIKSV 281 Query: 294 RETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 R + D YL + PR R A G+ P Sbjct: 282 RGSDVDAALHYLARMIEAGEDPRFIARRLIILASEDIGMAAP 323 >UniRef50_C6BV47 AAA ATPase central domain protein n=12 Tax=Desulfovibrionales RepID=C6BV47_DESAD Length = 420 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 113/266 (42%), Gaps = 37/266 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + +ADR IRPK ++E+ GQ +R ++E F R L LL+FGPPG GK+TLA ++ Sbjct: 9 QPLADR-IRPKKIDEFFGQNHIRERVEAF-----ERSKRLPSLLLFGPPGCGKSTLAMLL 62 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A G + S P + A+ L D+L +DE+HR S ++ P +E ++ Sbjct: 63 AKSTGRHFMRISAPESG----ITALRKQLAGMDILILDELHRFSKAQQDFFLPILESGEI 118 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSP--LRDRFGIVQRLEFYQVPDLQYIV 193 TL+ TT S + L R ++ RL DL I Sbjct: 119 --------------------TLLATTTENPSFSVTRQLLSRLHVL-RLRSLGKTDLLAIC 157 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 +R+ + +E+S+D + A G R LL K + I + + Sbjct: 158 NRACEELEIELSEDSLNLITSMAGGDGRSLLNLLEYTSQLPAEKREAENLRKILPET--V 215 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGG 279 + D +G + +L A+I G Sbjct: 216 IRGDRDGDSHY--ELASALIKSIRGS 239 >UniRef50_A9ULW2 Putative uncharacterized protein n=1 Tax=Xenopus laevis RepID=A9ULW2_XENLA Length = 339 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 35/212 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +AD +RP L Y+GQ +V + + L+ + + ++++GPPG GKTTLA+I+A Sbjct: 149 PLAD-KMRPTTLNNYMGQNKVLGENTMLRNL--LQANDIPSIILWGPPGCGKTTLAHIIA 205 Query: 77 N------EMGVNLRTTSGPVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEEVLY 127 V L TS + + + +LF+DEIHR + + ++ Sbjct: 206 KNAQKSSSRFVTLSATSASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDTFL 265 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQ 185 P +E + TLIGATT S + + L R ++ LE Sbjct: 266 PHVECGTI--------------------TLIGATTENPSFQVNTALLSRCRVIV-LEKLS 304 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRAR 217 V ++ I+ R+ +GL++ DG V + Sbjct: 305 VEAMETILMRAVDSLGLKVLKDGEQLVGSSSD 336 >UniRef50_C0X719 Crossover junction endodeoxyribonuclease n=29 Tax=Bacteria RepID=C0X719_ENTFA Length = 425 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 44/287 (15%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + +A R +RP+ L+E VGQ + +I + + L ++++GPPG GKT++A+ + Sbjct: 3 QPLAYR-MRPRHLDEVVGQQHLVGPGKIIRRM--VEAKMLSSMILYGPPGTGKTSIASAI 59 Query: 76 ANEMGVNLRTTSGPVLEKAG-DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQ 134 A R + K + A + +L +DEIHRL ++ L P +E+ + Sbjct: 60 AGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGR 119 Query: 135 LDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQYI 192 + +IGATT ++ +R R I + ++ D+Q Sbjct: 120 I--------------------IMIGATTENPYITINPAIRSRTQIFE-VKPLTETDIQQA 158 Query: 193 VSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT--IS 243 + + R +G + + + + R G R A L G I+ Sbjct: 159 IQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKIT 218 Query: 244 ADIAAQALDM--LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 I + + L D +G + D VI F G D AA Sbjct: 219 LPIIEECVQRKALTHDKDGDAHYD------VISAFQKSIRGSDVDAA 259 >UniRef50_C2MCK6 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteroidales RepID=C2MCK6_9PORP Length = 429 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 21/251 (8%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ +E +GQ + ++ I+ K+ L GP G+GKT+ A I+A Sbjct: 7 VSARKYRPQTFDEMLGQEAICLTLKSAIQQGKI----AHAYLFCGPRGVGKTSAARILAR 62 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLT-------NLEPHDVLFIDEIHRLSPVV----EEVL 126 + T G + A L L+ +D+I RL+ V ++ Sbjct: 63 TINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDVYIRPQQGK 122 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y ++ ++ A ++ PP I ATT + + R + + Sbjct: 123 YKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYD-FKPI 181 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + + R A GL+ +AR A G R A L R+ A DG IS Sbjct: 182 PPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRL---ASTAQDGVISY 238 Query: 245 DIAAQALDMLN 255 + Q L++L+ Sbjct: 239 EQTLQTLNILD 249 >UniRef50_B1ZVQ2 AAA ATPase central domain protein n=10 Tax=Bacteria RepID=B1ZVQ2_OPITP Length = 448 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 118/334 (35%), Gaps = 59/334 (17%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + +A R +RP+ L E VGQ + + + + + L+ +GPPG GKT++A + Sbjct: 27 QPLAAR-MRPRRLAEVVGQSHILKPGSLLPRL--VAQNRFGSLIFYGPPGCGKTSIAEAI 83 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEP----HDVLFIDEIHRLSPVVEEVLYPAME 131 A E + V+ +L +L + +LFIDE+HR + +++L P +E Sbjct: 84 AQETNSRFVRVNA-VMSNVAELREILHSARRLPQASTILFIDELHRFNKSQQDLLLPDVE 142 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPD- 188 + + LIGATT + PL R + RLE Sbjct: 143 EGTVR--------------------LIGATTHNPGFYVNPPLLSRSHLF-RLEPLSPAAV 181 Query: 189 ---LQYIVSRSARFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 L+ ++ R +G + D ++A G R A L + + G I Sbjct: 182 TGVLKKALADEERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVL--VLGLPEGGVI 239 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + ++ I D ++A I R + D Sbjct: 240 TPA-----------------ELEVFARERRIRYDADEDEHYDTISAFIKSCRGSDPDAAL 282 Query: 303 PYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 +L + PR R A G+ P+ Sbjct: 283 YWLAKMLAGGEDPRFIARRLVILASEDVGLADPQ 316 >UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD56_9FIRM Length = 628 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 113/313 (36%), Gaps = 40/313 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ +R + +++ ++ L GP G GKT+ A I+A + Sbjct: 8 RTWRPQDFDGLVGQEHIRKALTNALESGRIS----HAYLFTGPRGTGKTSTARILAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPAMEDYQ 134 T P D +T DV+ ID I + + E+V P Y+ Sbjct: 64 CEKGPTPHPCNTC--DHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + + A ++ PP I ATT + + + R V Sbjct: 122 VYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFD-FRRVTV 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + + A + D +A +A G R A LL + A ++A+ Sbjct: 181 DDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA-----NPVTAET 235 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKF--FGGPVGLDNLAAAIGEERETIEDVLE-- 302 Q L + R + A+++K P LD L + + ++ + + E Sbjct: 236 VRQVLGIAG----------RDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELL 285 Query: 303 PYLIQQGFLQRTP 315 Y+ Q P Sbjct: 286 EYMRALLLYQADP 298 >UniRef50_UPI00015B415D PREDICTED: similar to werner helicase interacting protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B415D Length = 522 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 103/283 (36%), Gaps = 62/283 (21%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM-- 79 +RP + YVGQ V + + L + +++++GPPG GKT+LAN++AN Sbjct: 114 KMRPNSIMSYVGQKHVLGPETMLYQL--LSKTEIPNIILWGPPGCGKTSLANVIANTCQH 171 Query: 80 ----GVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 S ++ A +A+ V+F+DEIHR + ++ P + Sbjct: 172 CPGGKYRYVKLSAAMSGISDVKDAITIASNELKFGRRTVMFMDEIHRFNKTQQDTFLPHI 231 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPD 188 E + LIGATT SL + L R ++ LE + + Sbjct: 232 ESGTI--------------------ILIGATTENPSFSLNAALLSRCRVIV-LEKLTIEN 270 Query: 189 LQYIVSRSARFMG-----------------LEMSDDGALEVARRARGTPRIANRLLRRVR 231 L I+ R+ + G + + +A + G RIA L Sbjct: 271 LTEILIRAIKAAGGAVHDFEKPPNASINNKFFIDRETVKWLAETSDGDARIALGGLELAI 330 Query: 232 -------DFAEVKHDGTISADIAAQALDMLN--VDAEGFDYMD 265 + + IS D +L + D +G + D Sbjct: 331 HSKVPSSEGSSSSGLNFISLDDVKDSLKKTHMLYDKKGDQHYD 373 >UniRef50_A6LJD0 AAA ATPase, central domain protein n=3 Tax=Thermotogaceae RepID=A6LJD0_THEM4 Length = 410 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 58/320 (18%), Positives = 116/320 (36%), Gaps = 52/320 (16%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK EE++GQ + + + A + L + +GPPG GKT+ I+ + Sbjct: 8 LRPKGFEEFIGQEHLFGEKGLIRLA--IESGNLFSAVFYGPPGCGKTSTLEIIRKKTDFE 65 Query: 83 LRTTSGPV-----LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 + + V ++K D A + L+ ++F+DEIHR + +++ P +E Sbjct: 66 IYHFNAAVTSTIDVKKVLDYAQKVKGLKKM-LIFVDEIHRFNKKQQDIFLPGIERG---- 120 Query: 138 MIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 + IGATT + L R ++ + +V +++ ++ R Sbjct: 121 ----------------DYIFIGATTENPFKMINPALLSRIKVIA-FKKLKVFEIKKLLER 163 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 + +++ + + R + G R A + + D A+ + +I Sbjct: 164 AISVKNIDVMESVMDFITRISDGDARFAINIYDVLSDMAKALGKEIVDDEIV-------- 215 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 L + + + +A I R + D Y+ + + P Sbjct: 216 -----------TLYGGEVKMVYTSKEHYELASAFIKSIRGSDPDAALYYMARMLEVGEDP 264 Query: 316 R--GRMATTRAWNHFGITPP 333 R R A G+ P Sbjct: 265 RFIARRLAILASEDVGLADP 284 >UniRef50_A5DW03 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DW03_LODEL Length = 839 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 43/237 (18%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A R +RPK L++++GQ ++ + ++ D + L++GPPG GKTT+A I+ Sbjct: 181 APLAHR-VRPKTLDDFIGQEKLVGENAPLRNL--IQADLIPSFLLWGPPGCGKTTIARII 237 Query: 76 ANEMGVNLRTTSGPVLEKA--GDLAAMLTNLEP----HDVLFIDEIHRLSPVVEEVLYPA 129 A SG D A NL+ +LF+DEIHR + V+++L P Sbjct: 238 AKSTDYRYVELSGADSNAKSLKDAFAQADNLKKLTGQRTILFLDEIHRYNKAVQDLLLPV 297 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVP 187 +E T+IGATT S L + L R +E Sbjct: 298 IERGTC--------------------TVIGATTENPSFNLNNALLSRLHTFV-MEPLTTT 336 Query: 188 DLQYIVSRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 + I+ R+ + + + + +A G R+A +L V + Sbjct: 337 AVVRILHRALYDINQLRKNLFQLHYMTLENGAFTYIAELCMGDSRVALNILETVNAY 393 >UniRef50_C8WLQ0 AAA ATPase central domain protein n=3 Tax=Coriobacteriaceae RepID=C8WLQ0_EGGLE Length = 446 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 112/300 (37%), Gaps = 48/300 (16%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + + + +A R +RP+ LEE VGQ + A + D L +++FGP G Sbjct: 8 MENERKSEVAPLAVR-MRPRTLEEVVGQDEAVGPGSWLRNA--IEQDQLSSVILFGPAGT 64 Query: 67 GKTTLANIVANEMGVNLRTTS---GPVLEKAGDLAAM---LTNLEPHDVLFIDEIHRLSP 120 GKT+LA+++A S G V + ++ A L+ +LF+DEIHR + Sbjct: 65 GKTSLAHVIAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILFVDEIHRFNR 124 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIV 178 ++ L A+ED L L+GATT + S L R +V Sbjct: 125 SQQDALLHAVEDRVL--------------------VLVGATTENPFFEVNSALISRSRVV 164 Query: 179 QRLEFYQVPDLQYIVSRSA---RFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDF 233 + L ++ +V R+ R +G + + A G R A L Sbjct: 165 E-LHGLSDEEIVSLVERALADERGLGGRYRLDAKARDAIVLLAGGDGRAALTTLELAAGM 223 Query: 234 AE---VKHDGTISADIAAQAL--DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 + K I+ D A L D + D VI F G D AA Sbjct: 224 VQPGTSKKPAKITEDNVRAATPHRSLPYDKNKDMHYD------VISAFIKSMRGSDPDAA 277 >UniRef50_C2HPK6 Crossover junction endodeoxyribonuclease ATPase n=8 Tax=Lactobacillus RepID=C2HPK6_LACAC Length = 478 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 35/294 (11%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 T + +AD +RPK L E VGQ + ++ + + ++ L LL++GPPG GKTTLA Sbjct: 51 TFKQPLADL-MRPKTLGEMVGQNHLLAKGKPLYQI--IKEHILLSLLLWGPPGCGKTTLA 107 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 +++ + + + + K+ + + + VL +DEIHRL+ +++ L P +E+ Sbjct: 108 YVMSQTLRLPFEKFNASIQNKSQLQKLIQKHPDESFVLLLDEIHRLTKPIQDYLLPYLEN 167 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQV--PD 188 L+G TT S+ +R R I EFY + D Sbjct: 168 GH--------------------VLLVGTTTENPIMSIQPAIRSRCQI---FEFYPIKAED 204 Query: 189 LQYIVSRSA-RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 ++ ++ ++A + ++ A +A G R++ +L + + A Sbjct: 205 IELVLIKAAEEHLNFDLPKKQAHAIANSGNGDVRVSLNILDTLNAMHPQNISMANIEEFA 264 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 D + + D L A D G A+ + +E V+ Sbjct: 265 RN--QHFAFDKDATKHYD--YLSAFQDSIEGSDADAALYYLAVILKSGDLESVV 314 >UniRef50_Q2J818 Recombination protein MgsA n=12 Tax=Bacteria RepID=Q2J818_FRASC Length = 519 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 123/348 (35%), Gaps = 46/348 (13%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 G +A R +RP+ L+E VGQ + + + G A ++++GPPG GK Sbjct: 44 GPGVDRAAPLAAR-LRPRTLDEVVGQRHLLGPGSPLRRL--VEGGATTSVVLWGPPGTGK 100 Query: 69 TTLANIVANEMGVNLRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVV 122 TTLA+IV+ G R S V + L+ VLFIDE+HR + Sbjct: 101 TTLAHIVSRATGRRFRELSAVTAGVKDVRAVIDEARETLSTSGARTVLFIDEVHRFTRTQ 160 Query: 123 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLT-SPLRDRFGIVQRL 181 ++ L P++E TL+ ATT + ++ L Sbjct: 161 QDALLPSVERGW--------------------VTLVAATTENPFFSVVSPLLSRSLLLTL 200 Query: 182 EFYQVPDLQYIVSRSAR-----FMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 E D++ +++R+ R L +SD+ V R A G R A L + Sbjct: 201 EPLTDDDIRGVLTRALRDPRGYDGRLSVSDEAREHVVRLAGGDARRALTTLEAGAEALLE 260 Query: 237 KHDGTISADIAAQALDMLNV---------DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLA 287 H+ A A D ++R + A + G D ++ Sbjct: 261 AHECESGPGGKAGAGADAGADAEAFVNPRPRLDLDLLERAVNRAAVRYDRSGDQHYDVIS 320 Query: 288 AAIGEERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 A I R D YL + PR R A G+ P Sbjct: 321 AFIKSMRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDIGMADP 368 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 112/296 (37%), Gaps = 28/296 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ EE +GQ + + I K+ L G G+GKT+LA I+ Sbjct: 5 YKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKI----AHAYLFSGAHGVGKTSLARII 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDL--AAMLTNLEPHDVLFIDE-----IHRLSPVVEE-VLY 127 A + +GP + G + N P DV+ ID I + ++E + Sbjct: 61 AKALNC----VNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRIS 116 Query: 128 PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I+ E A ++ PP I ATT A + +R R Sbjct: 117 PVAGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQY- 175 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH- 238 + + DL+ I+ ++ ++ +A++ARG+ R + +L ++ + K Sbjct: 176 TFKSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKY 235 Query: 239 --DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 ++A + + + D++ + K F V +I E Sbjct: 236 ITSADVNAVVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIE 291 >UniRef50_B3E131 ATPase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E131_METI4 Length = 454 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 125/345 (36%), Gaps = 56/345 (16%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 + T P +RP+ LEE VGQ + + + + D + L+++GPPG G Sbjct: 11 DTEQPTSPTAPLSTKMRPRTLEELVGQEDILLPGKPLRRL--IDADRIQSLILYGPPGTG 68 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNL-------EPHDVLFIDEIHRLSP 120 KTTLA I+A + + V D+ ++ + H +LFIDEIHR + Sbjct: 69 KTTLAEIIAKKTKSFFARLNA-VEAGVSDIRKVIGQAALRWKKEKKHTLLFIDEIHRFNK 127 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIV 178 ++VL P +E + LIGATT LT+PL R + Sbjct: 128 SQQDVLLPDLETGII--------------------KLIGATTHNPCFYLTAPLLSRSHLF 167 Query: 179 QRLEFYQVPDLQYIVSRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVR 231 + + L+ ++ R+ R +G + + + + G R L + Sbjct: 168 E-FKPLSKQSLETLLLRALTDKERGLGNYEVSIEKEAKEFLLNLCEGDARRLLNYLE-IA 225 Query: 232 DFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG 291 + ++ + + + + L + + G D ++A I Sbjct: 226 VLSSLQENQPAPVILNIETIQNL-------------VQKKIPRYDHGEDEHYDTISAFIK 272 Query: 292 EERETIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 R + D +L + PR R A G+ P+ Sbjct: 273 SIRGSDPDSALYWLAKMISAGEDPRFIARRLVILATEDIGLANPQ 317 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 94/251 (37%), Gaps = 30/251 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK ++ VGQ + + ++ + A K L G G GKTT + IVA + Sbjct: 7 RKWRPKTFDDVVGQEHITATLKNEVAAGKFS----HAYLFTGSRGTGKTTCSKIVAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE-VLYPAMEDYQ 134 P E A + + DV+ ID + + + EE P++ Y+ Sbjct: 63 CERPVDGNPCNECAA--CRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPSVVKYR 120 Query: 135 LDIMI------GEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I+ A ++ PP I ATT + + R QR +F+++ Sbjct: 121 VYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSR---CQRFDFHRI 177 Query: 187 PD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + + A ++DD AL +AR + G R A LL F I+ Sbjct: 178 RSRVIADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASFGT-----DITV 232 Query: 245 DIAAQALDMLN 255 QA + Sbjct: 233 QAVTQAAGLAG 243 >UniRef50_C4LTC0 AAA family ATPase, putative n=2 Tax=Entamoeba RepID=C4LTC0_ENTHI Length = 611 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 132/309 (42%), Gaps = 48/309 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A++ RPK LE+ +GQ + + F ++ D + +++GPPG GKTT+A I+ Sbjct: 44 PLAEKQ-RPKNLEDIIGQEDILAIGTPF--NTMIKNDKIQSTILYGPPGCGKTTIAGIIK 100 Query: 77 NEMGVNLRTTSGP-----VLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAME 131 N + S +K + A + + +LF+DEIH L+ + ++ PA+E Sbjct: 101 NNSKSTFISMSAASSKKEDFKKVINDAKHRKRMGINTILFLDEIHSLNRLQQDTFLPAIE 160 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDL 189 + LIGATT S L + L R +V L+ D+ Sbjct: 161 SGTI--------------------ILIGATTENPSFELNNALMSRCQLV-TLKKLTDEDV 199 Query: 190 QYIVSRSARFM----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 I+ ++ +++ ++G +A + G R A L +V + + + + Sbjct: 200 VKIMRKAIDEEYCNSKIDIDNEGLHFIAAISDGDARSALNTLEKVFVHFNLMSEKVLKNE 259 Query: 246 IAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYL 305 I + ++++ + +K + V+ + G V ++ E+++T E Sbjct: 260 INEK--GGIDIEVRELEEKVKKGEIKVL-RINGKIV---SIIDNKNEKQKTEE------- 306 Query: 306 IQQGFLQRT 314 I++G + +T Sbjct: 307 IEKGVIDKT 315 >UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Tax=Symbiobacterium thermophilum RepID=Q67TJ5_SYMTH Length = 570 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 24/253 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E VGQ + + I ++G L+ GP G GKTT+A I+A + Sbjct: 8 REYRPQRFGEVVGQEHITRTLRNAI----VQGRLHHAYLLSGPRGTGKTTVARILAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 P E + +T+ E D++ ID I + + ++V + +E Y+ Sbjct: 64 CLNPQDGEPCNEC--EACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP + ATT L + R Sbjct: 122 VYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFD-YRRLSA 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ + GL+ S + +AR A G R A LL +V +A +G I+ D+ Sbjct: 181 DEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAA---EGEITLDM 237 Query: 247 AAQALDMLNVDAE 259 L +D Sbjct: 238 TLAVLGTAPLDQF 250 >UniRef50_B6K1T7 DNA-dependent ATPase MGS1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K1T7_SCHJY Length = 514 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 113/310 (36%), Gaps = 52/310 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RPK L++YVGQ + + I + D ++++G G+GKTTLA I+A Sbjct: 88 PLAER-VRPKTLDDYVGQESLVGKGGIIRNL--IERDECPSMILWGNSGVGKTTLARIIA 144 Query: 77 NEMGVNL---RTTSGPVLEKAG---DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 G + TS V + + +L ++F+DE+HR + +++ P + Sbjct: 145 KTTGAHFLEVSATSASVSDCRKIFEESQNLLRLTGKKTIVFLDEVHRFNRAQQDIFLPMV 204 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 E + + + L S L R + ++ Sbjct: 205 EKGLITL------------------------NPSFRLNSALLSRCSVF-TFNVLDKDNVL 239 Query: 191 YIVSRSARFM------GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 I+ R+ + LE+ + ++ G R+A L E G++S Sbjct: 240 SILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCLEIALGMLE---GGSVSL 296 Query: 245 DIAAQAL--DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + D+ G + D + A G V AA+ +E + Sbjct: 297 PDLKKKFARSFSVYDSTGDAHYD--TISAFHKSIRGSDVD-----AALYYLCRMLESGED 349 Query: 303 PYLIQQGFLQ 312 P + + ++ Sbjct: 350 PLYVARRMVR 359 >UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A300_NATTJ Length = 589 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 32/285 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK + VGQ V + ++ I +++ L GP G GKT++A Sbjct: 1 MDYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRIS----HAYLFSGPRGTGKTSVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 + A + + + P + + + D+L ID I + + + V Y Sbjct: 57 VFAKALNCDHSQDNEPCGQCSRCIEHDRGTF--MDILEIDAASNRGIDEIREIRDHVAYS 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E +Y++ I + E A ++ PP I ATT L + R Q Sbjct: 115 PSEGNYKVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSR---CQ 171 Query: 180 RLEFYQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDF---- 233 R +FY++ ++ + L + + +A+++ G R A LL + F Sbjct: 172 RFDFYRLSTSKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSG 231 Query: 234 --AEVKHDGTISADIAAQAL-DMLNVDAEGFDYMDRKLLLAVIDK 275 +V H ++ ++ D+L EG ++ + D Sbjct: 232 EQLKVDHVLEVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDS 276 >UniRef50_C0R1V7 Holliday junction resolvase helicase subunit-like ATPase n=2 Tax=Brachyspira RepID=C0R1V7_BRAHW Length = 431 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 63/337 (18%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP +EE GQ + + + K + D + ++ FGPPG+GK+T+A+I+A Sbjct: 13 PMAER-MRPLTIEEVFGQHHILDKNKTLRKM--IDNDKITSMVFFGPPGVGKSTVASIIA 69 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH------DVLFIDEIHRLSPVVEEVLYPAM 130 + + VL ++ + E + +LFIDEIHR + ++ L PA+ Sbjct: 70 KKTKSEYIKLNA-VLSNVSEIREAIKKAEKNLENRKKTILFIDEIHRFNKSQQDALLPAV 128 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPD 188 E+ + LIG+TT L + L R + + D Sbjct: 129 ENGSI--------------------ILIGSTTLNPYFYLNNALLSRIMLFE-FRNLDDND 167 Query: 189 LQYIV------SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT- 241 ++ V R +++ D+ + R + G R A L ++ Sbjct: 168 IKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRYSHGDVRKAFTYLEASYLATQIDESKEK 227 Query: 242 --ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 I+ +I ++ + ++ + ++A I R + + Sbjct: 228 LTITEEIVRDVTSKQSISFDEDEHYN-------------------TISAFIKSVRGSDPN 268 Query: 300 VLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 YL + PR R A G+ P Sbjct: 269 AAIYYLARMLESGEDPRYVARRLCILASEDIGLAEPN 305 >UniRef50_B5JJN9 ATPase, AAA family protein n=2 Tax=Verrucomicrobia RepID=B5JJN9_9BACT Length = 496 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 40/281 (14%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 + + +A R +RP+ L E VGQ + + ++ + + + LL +GPPG GKT++ Sbjct: 70 SNKRQPLAAR-LRPRSLSEVVGQEHILAPGKLLPRL--VEANTFGSLLFYGPPGCGKTSM 126 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH----DVLFIDEIHRLSPVVEEVLY 127 A +A E + V+ +L +L VLFIDEIHR + +++L Sbjct: 127 AEAIAGETKSRFVRINA-VMSNVAELREILGIARRMEDKDTVLFIDEIHRFNKSQQDLLL 185 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQ 185 P +E + LIGATT + +PL R + RL + Sbjct: 186 PDVEAGNIR--------------------LIGATTHNPGFYVNAPLLSRSHLF-RLNPHD 224 Query: 186 VP----DLQYIVSRSARFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 V L ++ R +G + +A+ G R L + ++ Sbjct: 225 VDTVAATLAKALTDEERGLGERKITAVAGVLEGLAKLCDGDLRRGLNALEVIA--MGLEE 282 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 G I+ + + + + + A I GG Sbjct: 283 GGEITEESVGVFASERQIRYDADEDEHYDTISAFIKSMRGG 323 >UniRef50_O34528 Uncharacterized AAA domain-containing protein yrvN n=349 Tax=cellular organisms RepID=YRVN_BACSU Length = 421 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 131/332 (39%), Gaps = 56/332 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A R +RP +E+ +GQ + ++ +I + ++ L ++++GPPG+GKT++A +A Sbjct: 3 PLAYR-MRPTKIEDIIGQQHLVAEDKIIGRM--VQAKHLSSMILYGPPGIGKTSIATAIA 59 Query: 77 NEMGVNLRTTSGPVLEKAG-DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + R + + K ++ A + +L +DE+HRL ++ L P +E+ + Sbjct: 60 GSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMI 119 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRA--GSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 LIGATT ++ +R R I + LE ++ + Sbjct: 120 --------------------ILIGATTANPYHAINPAIRSRTQIFE-LEPLTPELIKQAL 158 Query: 194 SRSA----RFMG---LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT--ISA 244 R+ R +G + + D A G R A L + DG I+ Sbjct: 159 ERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITL 218 Query: 245 DIAAQAL--DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + A + L + D +G + D V+ F G D AA R Sbjct: 219 ETAEECLQKKSFSHDKDGDAHYD------VLSAFQKSIRGSDANAALHYLAR-------- 264 Query: 303 PYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 LI+ G L+ R A+ G+ P+ Sbjct: 265 --LIEAGDLESIA--RRLLVIAYEDIGLASPQ 292 >UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMU3_THEM4 Length = 460 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 112/298 (37%), Gaps = 27/298 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK E VGQ V+ +K ++ + GP G GKTT+A I+A + Sbjct: 6 RKYRPKKFLELVGQSHVKKLFVNSLKNKEIS----HAYIFAGPRGTGKTTVARILAKSLN 61 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP-AMEDYQ 134 P + + DVL +D I + + E V Y A Y+ Sbjct: 62 CENPQEIEPCNMCNACI--SIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGKYK 119 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP I ATT + + R ++ + Sbjct: 120 VYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVID-FKNISN 178 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + G+++S + +E+++RA G R A +L +V + A I + Sbjct: 179 KDIIKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSA----GKDIKIED 234 Query: 247 AAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + L ++ + + + ++ + + + NL + + E + ++E Sbjct: 235 VRETLGLIPDTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKLISLVE 292 >UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ85_9FIRM Length = 525 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 29/255 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ V ++ ++ +L L GP G GKT+ A I+A + Sbjct: 7 RQWRPQFFADMVGQQHVARTLQNALEQDRL----AHAYLFCGPRGTGKTSAAKILAKAIN 62 Query: 81 VNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-D 132 GP E + AA + DV ID I + + E+ Y +E Sbjct: 63 CE----KGPSREPCNECAACRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPVEVR 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +++ I + E A ++ PP + ATT L + + R + Sbjct: 119 HKVYIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQRLD-FHLI 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + D+ + G + DD +A A G R A LL ++ ++E G IS Sbjct: 178 GMTDIAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSE----GNISD 233 Query: 245 DIAAQALDMLNVDAE 259 + L + D Sbjct: 234 EDVLAVLGAVGRDVY 248 >UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJV5_9BACT Length = 533 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 114/298 (38%), Gaps = 38/298 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ +E Q + ++ I ++ L GP G+GKT+LA I+A Sbjct: 5 VLARKYRPQNFKEVYAQEHITEILQSAIATNRI----AHAYLFTGPRGVGKTSLARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAML--TNLEPHDVLFIDE-----IHRLSPVVEEVLYPA- 129 + +GP + L T DV+ ID + + + E+LYPA Sbjct: 61 SLNC----VNGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPAS 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 +Y++ I + A ++ PP I ATT + + R QR Sbjct: 117 SSNYKIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISR---CQRY 173 Query: 182 EFYQVP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 +F ++P + + + G+++ + +AR+A G R A L+ + + Sbjct: 174 DFKRIPIASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCL---- 229 Query: 240 GTISADIAAQALDMLN--VDAEGFDYM---DRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 I+ D Q M+ V + + D + L+ + F + L A + E Sbjct: 230 NNITIDKVRQIFGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQE 287 >UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and tau n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4B Length = 522 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 116/312 (37%), Gaps = 39/312 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ + ++ IK ++ L G G GKTT A I A + Sbjct: 7 RKYRPQKFSDMVGQEHITKTLKNQIKLNRI----AHAYLFTGSRGTGKTTAAKIFARAIN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 P + + + +++ +D + + + EEVLY PA+ Y+ Sbjct: 63 CKNSVDGKPCEKCV--VCKEIAEGAFVNIIELDAASHNGVDDIRQINEEVLYTPAVGVYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R QR +F ++ Sbjct: 121 VYIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSR---CQRFDFRRI 177 Query: 187 P--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + + +E+ + +AR A G R A +L + F D I+ Sbjct: 178 STSDICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYI---DEKITH 234 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 + + VD M + AVI+ + + I ++ I+ + Sbjct: 235 SKVLKLVG--AVDNALLFEM----MNAVIEMDAAKAI---AVCNEINQQGRNIKQFAKDL 285 Query: 305 LI--QQGFLQRT 314 L+ + + +T Sbjct: 286 LMHTRNLLIAKT 297 >UniRef50_A5WC21 Recombination protein MgsA n=9 Tax=Bacteria RepID=A5WC21_PSYWF Length = 439 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 48/285 (16%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 P+ + +RPK L+E +GQ + + + + L L++ G G+GKTT+A + Sbjct: 11 PDIPLAQRLRPKRLDEVIGQTHLLAPGAPIQRF--VEHGHLPSLILHGEAGIGKTTIAML 68 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLE---------PHDVLFIDEIHRLSPVVEEV 125 +A+ +G S + L +L V+FIDEIHR + ++ Sbjct: 69 LADAVGRPFYPLSA-INTGVKQLREVLDAGSSSGQGGLDFASPVVFIDEIHRFNKAQQDA 127 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEF 183 L A+E + TLIGATT S+ + L R V RL+ Sbjct: 128 LLGAVESGDI--------------------TLIGATTENPSFSVNNALLSRCQ-VYRLQP 166 Query: 184 YQVPDLQYIVSRSARFMG----LEMSDDGALEVARRARGTPRIANRLLRRVRDFAE---- 235 + ++ R+ L + ++A A+G R A LL ++ Sbjct: 167 LDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQASDHSKQ 226 Query: 236 -VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + D + + +A L D +G + D + A+I G Sbjct: 227 PIVIDDALLSSVAQTTLQR--YDKDGDQHYDI--ISAMIKSVRGS 267 >UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Tax=Bacilli RepID=Q4L3D4_STAHJ Length = 571 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 94/264 (35%), Gaps = 29/264 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ V + I +G + GP G GKT++A + A + Sbjct: 8 RMFRPQSFQDVVGQEHVTKTLRNAIS----KGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI--------DEIHRLSPVVE----EVLYP 128 P E A + +T DV+ I DEI + V+ E Y Sbjct: 64 CLNPQDGEPCNECA--ICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYK 121 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 ++ ++ A ++ PP I ATT + + R + Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD-FKAIGT 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + A L+ ++ +A+ + G R A ++ + F D ++ Sbjct: 181 EQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAF----GDEHLT--- 233 Query: 247 AAQALDMLN-VDAEGFDYMDRKLL 269 ALD+ VD + + + ++ Sbjct: 234 LQDALDVTGSVDEAALNELFKDVI 257 >UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V121_9FIRM Length = 615 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 29/251 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ + + + + ++ L GP G GKT+ A I+A + Sbjct: 8 RRWRPERFADLVGQEHISRTLSRAVTSGQIS----HAYLFTGPRGTGKTSTAKILARALN 63 Query: 81 VNLRTTSGPVLEKAG--DLAAMLTNLEPHDVLFID-----EIHRLSPVVE-------EVL 126 GP L G D +++ DV ID I + + E E L Sbjct: 64 C----AEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGL 119 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y ++ ++ E A ++ PP I ATT + + ++ R Sbjct: 120 YKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYD-FHRI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V ++ + + G+E +D +A +A G R A +L + AE GT++A Sbjct: 179 TVTEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAE----GTLTA 234 Query: 245 DIAAQALDMLN 255 + +AL ++ Sbjct: 235 ERVQEALGLVG 245 >UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZS6_UNCTG Length = 531 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 34/301 (11%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ +E VGQ + ++ I L GP G GKTT+A I+A Sbjct: 5 VLARKFRPQNFDEVVGQEHISQTLKNSIS----EKRIAHAYLFSGPRGCGKTTMARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVEEVLYP-A 129 + +GP ++ G ++ DVL ID I + + E V + A Sbjct: 61 ALNCK----NGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTA 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + + A ++ PP I ATT + + R R Sbjct: 117 SSKYKIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRY-RF 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + ++ + + G E+ D+ V + G+ R A LL + A + G Sbjct: 176 KLISGAEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQ----AVSSNTGR 231 Query: 242 ISADIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 I+ D L +L D + D +L ++ + + + A + E Sbjct: 232 ITGDYMRGLLGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHLRN 291 Query: 297 I 297 + Sbjct: 292 V 292 >UniRef50_Q47N55 Recombination protein MgsA n=6 Tax=Bacteria RepID=Q47N55_THEFY Length = 441 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 120/333 (36%), Gaps = 58/333 (17%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A R +RP+ L+E VGQ + + + + DA LL++GPPG GKTTLA +V Sbjct: 18 EPLAVR-MRPRTLDEVVGQRHLLGEGSPLRRL--VEDDAPMALLLWGPPGTGKTTLATVV 74 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEP-------HDVLFIDEIHRLSPVVEEVLYP 128 + S V D+ ++ H +LF+DE+HR S ++ L P Sbjct: 75 SRATRRRFVELSA-VTSGVKDIRDVVDEARRELGMRGVHTLLFVDEVHRFSKTQQDALLP 133 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS-PLRDRFGIVQRLEFYQVP 187 A+E+ + IGATT + ++ L + Sbjct: 134 AVENRW--------------------VSFIGATTENPFFSVISPLLSRSLLLTLHAHSDD 173 Query: 188 DLQYIVSRSA---RFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 D++ +V R+ R + ++++ + R A G R + L A + I Sbjct: 174 DIRTVVRRALTDERGLAGRYTLTEEALHHLVRLAGGDARRSLTYLEAAALVAGDRT--EI 231 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + +A D + G D ++A I R + D Sbjct: 232 TVADVERAAD-----------------RTAVRYDRSGDQHYDVVSAFIKSMRGSDVDAAL 274 Query: 303 PYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 YL + PR R A G+ P Sbjct: 275 HYLARMIEAGEDPRFIARRLVVHASEDVGMADP 307 >UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LV54_9FIRM Length = 691 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 37/298 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP ++ VGQ V + I A ++ L GP G GKT+ A I+A + Sbjct: 35 RQWRPGSFKDLVGQTAVSRTLSHAISAGRI----AHAYLFSGPRGTGKTSTAKILAKSLN 90 Query: 81 VNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 GP E G + + DV ID I + + E+V + PA Sbjct: 91 CE----KGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGR 146 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + ++ R Sbjct: 147 YKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFD-FRRI 205 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V +++ ++ A+ M + + +AR+A G R A LL + T++A Sbjct: 206 TVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASL----DGDTLTA 261 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + L ++ + L I + G V L+ +A + ++ ++ + E Sbjct: 262 ACVEENLGLIGHEP-------IYRLTKAIGERAKGEV-LETIAELLALGKDPMQLLAE 311 >UniRef50_Q4P896 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4P896_USTMA Length = 566 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 108/304 (35%), Gaps = 67/304 (22%) Query: 17 DVADRAIRPKLLEEYVGQPQVR-SQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 A+R +RP+ L+EYVGQ V +++ ++ K+ ++++GPPG GKTTLA ++ Sbjct: 27 PFAER-MRPQTLDEYVGQSDVVNGPLKMLLRQGKI-----PSMILWGPPGTGKTTLARLL 80 Query: 76 ANEMG---------------VNLRTTSGPVLEKAGDLAAMLTNLE---PHDVLFIDEIHR 117 A V + T+ + L L LE +LFIDEI R Sbjct: 81 AKSASSTDSTCRQGPPPHRFVEISATNSGANDVKKILDEALHRLELTAQRTLLFIDEIQR 140 Query: 118 LSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRF 175 + ++VL PA+E Q+ L+ ATT S L S L R Sbjct: 141 FNRAQQDVLLPAVEKGQI--------------------VLVAATTENPSFRLQSALISRM 180 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMGLE---------------MSDDGALEVARRARGTP 220 + L V + ++ + + E + + +A A G Sbjct: 181 RVFV-LTKLSVDECCQVLRNALASVKRESDQADQHAECVAAAYIDEHLIRWIANMADGDA 239 Query: 221 RIANRLLRRVRDFAEVKHDGTISADIAAQALDM--LNVDAEGFDYMDRKLLLAVIDKFFG 278 R A L + + AL L D G + D + A+ G Sbjct: 240 RTALGALELALSTTDASVCSAENVSRLKTALKRTALQYDRTGDMHYD--TISALHKSIRG 297 Query: 279 GPVG 282 Sbjct: 298 SDAD 301 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 31/269 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK+ E+ V Q + ++ IK K+ + GP G GKTT A I+A + Sbjct: 7 RKYRPKVFEDVVAQEHITKTLKNQIKQDKV----AHAYIFTGPRGTGKTTTAKIMARAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA-MEDYQ 134 P E ++ + N + DVL ID ++ + + +EV YP M + Sbjct: 63 CLNPKDGNPCNEC--EVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKRR 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R + V Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFD-FKRISV 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + + + + D ++++A G R A +L R + D IS Sbjct: 180 KDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVN----TSDEHISYKF 235 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDK 275 A L + + + ++ L A+++ Sbjct: 236 VANLLGVTS------TEIVKEYLNAIVEN 258 >UniRef50_A3LTW2 Replication factor ATPase n=1 Tax=Pichia stipitis RepID=A3LTW2_PICST Length = 786 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 78/315 (24%), Positives = 123/315 (39%), Gaps = 63/315 (20%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 +A + L +A+ AIRP+ L+EY+GQ + I R L +L++GPPG+GK Sbjct: 14 NALSILSLPLAE-AIRPRSLDEYIGQKHLIDPDNGAITNFM-RLRYLPSMLLYGPPGVGK 71 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKA--GDL----------AAMLTNLEPHDVLFIDEIH 116 TT+A+I+A E G S A DL A E V+FIDEIH Sbjct: 72 TTMASIIAEECGYVFVELSATAATVADLRDLSTTIMAENRKRASRGEEELKVVVFIDEIH 131 Query: 117 RLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFG 176 R + ++ L P +E+ F IGATT + R R Sbjct: 132 RFTVSQQDFLLPYVEEG--------------------NFVFIGATT----IDPRKRIRRA 167 Query: 177 IVQRLEFYQVPDLQ-----YIVSRSARFMG-----------LEMSDDGALEVARRARGTP 220 I+ R++ + + L ++ R+ RF +++ D + + A G Sbjct: 168 ILSRVQCFSLNTLNNNEVLEVLKRAMRFENIRRKAVHGLRCIDLDDQSLSLIIKTAGGDT 227 Query: 221 RIANRLLRRV------RDFAEVKHDGTISADI--AAQALDMLNVDAEGF-DYMDRKLLLA 271 R A L+ + + E +D I D + + + G D + LLL Sbjct: 228 RKAINLIELLNTKYTDSPYKEGDNDVPIVMDFLTLKKNIRDMRYCQSGLQDPRNISLLLN 287 Query: 272 VIDKFFGGPVGLDNL 286 + D P + L Sbjct: 288 MFDTMRQLPNRREVL 302 >UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y576_9FIRM Length = 613 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 105/291 (36%), Gaps = 31/291 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP EE VGQ + + ++ +K K+ L GP G GKTT+A ++A + Sbjct: 8 RTYRPSSFEEVVGQQHIVTTLKNAVKQNKI----AHAYLFCGPRGTGKTTIAKLLAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 + P + LA + D++ ID + + ++E+V Y +E Y+ Sbjct: 64 CE-DQQNAPCNQCRSCLA--IQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I M A ++ PP I ATT + + R Sbjct: 121 VYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYD-FSKVGQ 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ V +E D+ VA+ A G R A ++ + +A+ I+A Sbjct: 180 NEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQ----NHITAAH 235 Query: 247 AAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 + + V + + LL I V + L + + E Sbjct: 236 VNEIYGITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIE 286 >UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 Tax=Clostridiales RepID=A9KQC7_CLOPH Length = 522 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 24/250 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP E+ GQ + + ++ IKA ++ L G G GKTT+A I+A + Sbjct: 8 RKFRPDTFEDVKGQDHIVTTLKNQIKAKRIG----HAYLFCGTRGTGKTTVAKILAKTVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 P E A + + + +V+ ID + + +VEEV Y E +Y+ Sbjct: 64 CEHPIDGNPCNECA--MCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPTEGNYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + R + Sbjct: 122 VYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYD-FRRVTI 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ + G+E + VAR A G+ R A LL + F +++ D Sbjct: 181 DEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYF---GQSLTYDN 237 Query: 247 AAQALDMLNV 256 AL +++ Sbjct: 238 VLDALGTVDI 247 >UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES0_ELUMP Length = 627 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 121/340 (35%), Gaps = 46/340 (13%) Query: 3 EADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFG 62 E DR IS RP+ E+ VGQ + + IK ++ L +G Sbjct: 7 EKDRYISLSN---------KYRPQTFEDVVGQETISKTLTNAIKLGRVG----HAYLFYG 53 Query: 63 PPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAML--TNLEPHDVLFIDE-----I 115 P G GKTT A I A + + P G + N DVL +D + Sbjct: 54 PRGCGKTTSARIFAKALNCTGNG-NKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQV 112 Query: 116 HRLSPVVEEVL-YPAMEDY-------QLDIMIGEGPAARSIKIDLPP--FTLIGATTRAG 165 ++ + + + A D ++ ++ A I+ PP I ATT Sbjct: 113 DKIREAIIDTVALAATRDRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKH 172 Query: 166 SLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANR 225 + + + R R D+ ++ A+ + + +A +A G R A Sbjct: 173 KVPATISSRCQTF-RFRPITQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALT 231 Query: 226 LLRRVRDFAEVKHDGTISADIAAQALDMLNVDA--------EGFDYMDRKLLLAVIDKFF 277 +L R ++ DG+I+ ++ L ++ D +Y + + I Sbjct: 232 ILDRAIAYS----DGSITEELVIDMLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEG 287 Query: 278 GGPVG-LDNLAAAIGEERE-TIEDVLEPYLIQQGFLQRTP 315 P+ L +L A+G+ +I EP+ ++T Sbjct: 288 FDPLSFLRDLKNALGDLFYLSIGHGHEPFSGAAELAKKTS 327 >UniRef50_B2W7D9 DNA-dependent ATPase MGS1 n=2 Tax=Leotiomyceta RepID=B2W7D9_PYRTR Length = 534 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 107/311 (34%), Gaps = 47/311 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP LE GQ + I A + L ++++G PG GKTT+A ++A Sbjct: 118 PLAER-MRPMSLEHVYGQE-LVGPKGILR--AMVDEGRLPSMVLWGRPGTGKTTIARLIA 173 Query: 77 NEMGVNLRTTSGPVLEKAG------DLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 N G + + + L ++F DE+HR S ++ + Sbjct: 174 NTSGSRFVEINSTSTRLEQVRAIFTEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPV 233 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPD 188 E + TLI ATT + S L R L+ + D Sbjct: 234 ESGTI--------------------TLIAATTENPSFKIISALLSRCRTF-TLDDLKEDD 272 Query: 189 LQYIVSRSARFMGLE---MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 L I+ R+ + AR + G R A LL A + ++ + Sbjct: 273 LVKILERAMTAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLA---NQPDMTKE 329 Query: 246 IAAQAL-DMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 Q+L L D G + D + A+ G A++ +E +P Sbjct: 330 KIQQSLTKTLVYDRAGDQHYDS--ISALHKSIRGSDPH-----ASLYYLARMLESGEDPR 382 Query: 305 LIQQGFLQRTP 315 I + + Sbjct: 383 YIARRLIVVAS 393 >UniRef50_C5RHF7 AAA ATPase central domain protein n=11 Tax=Bacteria RepID=C5RHF7_CLOCL Length = 424 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 115/290 (39%), Gaps = 48/290 (16%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +ADR +RP+++EE VGQ + Q +I K + + +++ +GPPG GKTT+ANI+A Sbjct: 3 PLADR-LRPQVIEEVVGQSHLIGQNKILTKI--IESQHIPNMIFYGPPGCGKTTVANIIA 59 Query: 77 NEMGVNL---RTTSGPVLEKAGDLAAMLTNLEPHDV-LFIDEIHRLSPVVEEVLYPAMED 132 T+ + + + T + V L++DEI + ++ L +E+ Sbjct: 60 KATNKRFFKLNATNASTKDIKEIILELDTFMGAKGVLLYLDEIQNFNKKQQQSLLEFIEN 119 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQ 190 + TLI +TT + + + R + + + D++ Sbjct: 120 GSI--------------------TLIASTTENPYFYVYNAILSRSNVFE-FKMVSSDDIE 158 Query: 191 YIVSRSARFM-------GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + R+ + + + D+ ++ A G R A L F+ D I Sbjct: 159 KALMRAVEVLQNDFKSSKILLEDEALKYISAIAGGDVRKALNALELAV-FSSKAKDNIIK 217 Query: 244 ADI----AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 DI A ++N D +G + D V+ F G D AA Sbjct: 218 IDINAAYDATQRKIMNFDKDGDGHYD------VLSAFQKSIRGSDADAAV 261 >UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 Tax=Bacteria RepID=C9L9Q0_RUMHA Length = 538 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 30/265 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A I+A + Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTIAKILARAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 P + +V+ ID + + + EEV Y P Y+ Sbjct: 64 CEHPVDGSPCNTCK--TCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT A + + R QR +F ++ Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSR---CQRYDFRRI 178 Query: 187 --PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + + G ++ + +A+ A G+ R A LL + F ++ Sbjct: 179 TADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYL---GEKLTY 235 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLL 269 + + L VD + F M R++L Sbjct: 236 EKVLENLG--AVDTQVFSRMLRQIL 258 >UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI02_PETMO Length = 467 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 111/299 (37%), Gaps = 36/299 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK +E +GQP V + K A + + + GP G GKTT A I+A + Sbjct: 7 RKYRPKDFDEILGQPHVVK----YFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLF--------IDEIHRLSPVVEEVLYPAMED 132 P + + + N DV+ IDEI + P Sbjct: 63 CKDPQGYNPCNKC--ENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDS--SNYRPVYGK 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R I+ + Sbjct: 119 YKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIIN-FKNL 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ + A G+E D +A+RA+G R A +L +V F + I+ Sbjct: 178 GQNEIVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKF----GEKKITH 233 Query: 245 DIAAQALDMLNVDAEGFDYMDRK-LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 LD+L + E F + + + ID+F L NL + +E +E Sbjct: 234 ---QDTLDILGLFDENFIVQFIENVYNSKIDEFLAQSEDLFNLG---KDPEILLEQSIE 286 >UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=Lactobacillus RepID=Q1G919_LACDA Length = 607 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 116/329 (35%), Gaps = 31/329 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ + + K + +RG L GP G GKT+ A I A + Sbjct: 8 RKWRPRTFDDVVGQEAITDTL----KNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 P E + LAA D++ +D + + ++++V Y P Y+ Sbjct: 64 CLNLQEGEPCNECSNCLAA--DQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R + + Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYN-FKRFSN 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + G+E D +A+ A G R A +L ++ F Sbjct: 181 EAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF----------EKS 230 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 + + D L V KLLLA+++ + L A G + I + + + Sbjct: 231 SVRYEDALEVTGFAAQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTV 290 Query: 307 QQGFLQRTPRGRMATTRAWNHFGITPPEM 335 Q +T +G T P+ Sbjct: 291 QAMLFTKTGQGEFLTDDFAQEIAQQSPDR 319 >UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bacillus cereus group RepID=B7IZ38_BACC2 Length = 548 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 118/308 (38%), Gaps = 42/308 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP E +GQ ++ ++ +K AK + GP G GKTT+A ++A + Sbjct: 7 RKYRPTNFSELIGQNHIKQTIQNALKLAKFS----HAYMFTGPRGTGKTTIAKLIATSLN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 G + A+ N DVL ID + ++ + E+V Y P Y+ Sbjct: 63 CESLNNEGEPCNECSQCKAIRGNSHA-DVLEIDAASNNGVEQIREIREQVAYAPGTGKYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R QR +F ++ Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISR---CQRFDFRRI 178 Query: 187 P--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + A +++ +D + A+G R A L+ + FA + TI+ Sbjct: 179 GPRDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNE---TITK 235 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 D ++ + ++++ + A I G N + + I + EP Sbjct: 236 DDVSEVVGRISIEK----------IEACIGDLLKG-----NTIEILNLINQVILNGKEPI 280 Query: 305 LIQQGFLQ 312 + + + Sbjct: 281 YLLEDLIG 288 >UniRef50_B5ZIA7 DNA polymerase III, subunits gamma and tau n=10 Tax=Acetobacteraceae RepID=B5ZIA7_GLUDA Length = 687 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 27/265 (10%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 P V R RP L++ +GQ S + I A L G ++ G G+GKTT A I Sbjct: 56 PYRVLARKYRPTTLDDLIGQD---STVRILRNAFAL-GRVAHAFMLTGVRGVGKTTTARI 111 Query: 75 VANEMGV-NLRTTSGPVLEKAGDLAAMLTNL--EPHDVLFID-----EIHRLSPVVEEVL 126 +A + T GP + G A + L DVL +D + + ++E Sbjct: 112 IARALNCVGPDGTGGPTADPCGVCANCVAILADRHPDVLEMDAASRTGVDDVREIIEATR 171 Query: 127 YPAMEDY-------QLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 + M+ ++ ++ A ++ PP T + ATT + + R Sbjct: 172 FRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFVFATTELRKVPVTVLSR--- 228 Query: 178 VQRLEFYQVP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 QR + +VP DL R AR G E + D +AR A G+ R LL + Sbjct: 229 CQRFDLRRVPQSDLAAHFGRIARAEGAECTPDALALIARAADGSVRDGLSLLDQAIAQGS 288 Query: 236 VKHDGTISADIAAQALDMLNVDAEG 260 V+ DG A + DML + G Sbjct: 289 VEGDGAAPIG-AERVADMLGLADRG 312 >UniRef50_Q73K31 DNA polymerase III, gamma and tau subunits, putative n=2 Tax=Treponema RepID=Q73K31_TREDE Length = 612 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 29/261 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V RP+ E+ +GQ V + ++ I+A K+ L GP G GKT+ A Sbjct: 1 MEYQVTATRRRPQRFEDLLGQEFVAATLQKSIEAGKI----AHAYLFSGPRGCGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFIDE-----IHRLSPVVEEVL 126 I+A + GP G + +T DV+ ID ++ + + +E+L Sbjct: 57 ILAKVLNC----AEGPRPTPCGHCTSCEEITAGSCLDVIEIDGASNTSVNDVRQIKDEIL 112 Query: 127 YPAMEDY-------QLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 +P + ++ ++ A I+ PP I ATT + + ++ R Sbjct: 113 FPPNSNRYKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQ 172 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 + + L+ ++ +A +G+ D+ +AR A G+ R A L +V F+ Sbjct: 173 FN-FKLVSIEILKQALADAAAELGISADDEALYWIAREATGSVRDAYTLFDQVAAFS--- 228 Query: 238 HDGTISADIAAQALDMLNVDA 258 DG I+ + + L + VD+ Sbjct: 229 -DGHITFEKIHEKLGLTGVDS 248 >UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLY2_ACIFE Length = 671 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 42/311 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ ++ + ++ ++ L GP G GKT+ A I+A + Sbjct: 8 RTWRPQDFDDLVGQAPIKKALTNALETGRIS----HAYLFAGPRGTGKTSTARILAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 T+ P + + +T DV+ ID I + + E+V + P Y+ Sbjct: 64 CEKGPTAHPCNQCSN--CREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFAPTSCRYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY-- 184 + I + + A ++ PP I ATT + + + R QR +F Sbjct: 122 VYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSR---CQRFDFRRA 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V ++ + + A+ ++ + +A +A G R A LL + A ++A Sbjct: 179 TVDEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMASP-----VTA 233 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI---GEERETIEDVL 301 + Q L ++ R+L+ + K G LD L + E + + ++L Sbjct: 234 ETVRQVLGLVG------REKLRELVTRIGQKNLSGA--LDALGQLLEQGKEMEQILAELL 285 Query: 302 EPYLIQQGFLQ 312 E Y Q Sbjct: 286 E-YFRALLLYQ 295 >UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 Tax=Thermoanaerobacterales RepID=C6PF43_CLOTS Length = 533 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 45/321 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E +GQ + ++ IK ++ L G G GKT++A I A + Sbjct: 7 RKYRPRNFSEVLGQNHIVRTLKNQIKTGRIG----HAYLFCGTRGTGKTSVAKIFAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 P + N D++ ID + + + + ++Y P++ Y+ Sbjct: 63 CPNSVEGEPCNRC--QICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + G A ++ PP I ATT + + + R QR +F ++ Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSR---CQRFDFKRI 177 Query: 187 PD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV-------K 237 P + + + A+ + + + +AR G+ R A +L + + +V Sbjct: 178 PSKVISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCD 237 Query: 238 HDGTISADIAAQALDMLN----------VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLA 287 GT++ D + +N +D +D L+ + F V Sbjct: 238 ILGTVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCG 297 Query: 288 AAIGEERETIEDVLEPYLIQQ 308 E E +E + +++ Sbjct: 298 T---ESEEILETEINDKILKA 315 >UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Bacilli RepID=Q1WSU3_LACS1 Length = 579 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 100/307 (32%), Gaps = 27/307 (8%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ V ++ I + L GP G GKT+ A I A + Sbjct: 8 RVWRPQRFMDLVGQEMVTKTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAKIFAKAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVE----EVLYP 128 P E + +T +DV+ ID EI + V+ E Y Sbjct: 64 CRFSKEGEPCNEC--ETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYK 121 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 ++ ++ A ++ PP I ATT + + + R + Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFD-FKRITA 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE----VKHDGTI 242 + + ++ D +A+ A G R A LL +V F + + + + Sbjct: 181 ESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLV 240 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + + ++L N L + G + I R+ + Sbjct: 241 TGSVTQESL--FNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQA 298 Query: 303 PYLIQQG 309 P ++ G Sbjct: 299 PEMVSDG 305 >UniRef50_A0RRQ8 ATPase, AAA family n=3 Tax=Campylobacter RepID=A0RRQ8_CAMFF Length = 397 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 46/300 (15%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RP + + VGQ + FIK+ K+ H L FG G GKTT+A I+A +M Sbjct: 7 FRPNNINDMVGQKDIVELFSKFIKSKKI-----PHSLFFGATGCGKTTMAKIIAKQMNYE 61 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 G L K+ D+ +++ E ++FIDE HRLS +E L ME + Sbjct: 62 FFELDGANL-KSEDIRKIISKFETTLYKPLIFIDEFHRLSKTQQETLLIPMEKGKC---- 116 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPDLQYIVSRSA 197 ++GATT ++S +R R I + + +L ++++ Sbjct: 117 ----------------IVMGATTENPKFVVSSGIRSRMMIFE-FKPLSHDELTILLTKVQ 159 Query: 198 RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVD 257 + E++++ + + G R LL + D +I +I + L V Sbjct: 160 NVIKFEITNEAKDYLINSSGGDARSLLNLLE-----FALSADKSIGLNIL-KTLRSHRV- 212 Query: 258 AEGFDYMD--RKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +EG D +L A+I G + A+I I+ EP + + + Sbjct: 213 SEGVSNSDTHYELTSALIKSLRGSDID-----ASIYYLARLIQGGEEPAFLARRMVIFAS 267 >UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Tax=Clostridiales RepID=C7GFD5_9FIRM Length = 526 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 95/264 (35%), Gaps = 26/264 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A I A + Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTIAKIFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 P E + +V+ ID + + + EEV Y E Y+ Sbjct: 64 CEHPVDGSPCGECPA--CRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYRPTEGKYK 121 Query: 135 LDIMIGE------GPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I+ A ++ PP I ATT A + + R + Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYD-FRRISI 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + + + + +A+ A G+ R A LL + F ++ D Sbjct: 181 ETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYL---GQDLTYDK 237 Query: 247 AAQALDMLNVDAEGFDYMDRKLLL 270 + L VD E F + R++L Sbjct: 238 VLETLG--AVDTEIFSRLLRQILE 259 >UniRef50_B2GIA8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B2GIA8_KOCRD Length = 556 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 37/242 (15%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDA--LDHLLIFGPPGLGKTTLAN 73 +A R +RP+ L+E VGQ + ++++GPPG GKTT+A Sbjct: 35 APLAVR-MRPRTLDEVVGQKHLLRPGSPLRALVNGSSGPAAPSSVILWGPPGTGKTTIAQ 93 Query: 74 IVANEMGVNLRTTSG---PVLEKAGDLAAMLTNLEPH---DVLFIDEIHRLSPVVEEVLY 127 ++A G S V + + LT + H VLF+DEIHR + ++ L Sbjct: 94 VIARGHGTTFVELSALTAGVKDVRRVMDEALTARDLHGRTTVLFLDEIHRFTKAQQDALL 153 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQ 185 P +E+ L+ ATT S+ SPL R ++ L+ + Sbjct: 154 PGVENGW--------------------VILVAATTENPSFSVISPLLSR-SLMLTLQPLE 192 Query: 186 VPDLQYIVSRSA---RFM--GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 D+ ++ R+ R + ++++ + + A G R A L A G Sbjct: 193 RRDIGELLDRAVTDPRGLDGAVDLAPEAREHLLDVAGGDARKALTSLEAAAGVALSHAGG 252 Query: 241 TI 242 + Sbjct: 253 VV 254 >UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0B1_9SPHI Length = 575 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 99/256 (38%), Gaps = 23/256 (8%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + + ++ IK+ +L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQ----AFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAME- 131 + T + N +V +D + + +V++V YP Sbjct: 62 TINCLTPTEDFEACGTCESCVS-FQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQSG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 ++ I + A ++ PP I ATT + + R I + Sbjct: 121 KRKVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFD-FKR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 +V D+ ++ A+ +E D +A++A G R A L + F+ +H I+ Sbjct: 180 IEVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSADRH---IT 236 Query: 244 ADIAAQALDMLNVDAE 259 + L +L+ D Sbjct: 237 YQSVVKNLHILDHDYY 252 >UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD6_9FIRM Length = 655 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 114/307 (37%), Gaps = 37/307 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ +E VGQP + ++ +K +L L GP G GKT+ A I+A + Sbjct: 8 RVWRPQSFDELVGQPLIAETLKNAVKNQQLS----HAYLFTGPRGTGKTSAAKILAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVEEVLYPAMED 132 +T P + +L +T + DV+ ID EI L V P+ Sbjct: 64 CPHQTDGNPCNQC--ELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKV--RYAPSQAT 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + + R Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQRFD-FGRI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 DL + G++ + +AR A G R + LL + + + ++ Sbjct: 179 SQADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSY----NRSAVTV 234 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 A + L Y+D L A+ + GP L L A++ E ++ V E Sbjct: 235 QSALEVTGSL----SQLVYID--YLTAL--QAQDGPKALSILQASLQEGKQANRFVEELI 286 Query: 305 LIQQGFL 311 L + L Sbjct: 287 LFCRDLL 293 >UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Bacteroidales RepID=C6ITP2_9BACE Length = 619 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 94/256 (36%), Gaps = 24/256 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP E VGQ + + ++ I KL L GP G+GKTT A I A Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKL----AHAYLFCGPRGVGKTTCARIFAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA-ME 131 + TT G + A +++ +D + + +VE+V P + Sbjct: 62 TINCMTPTTDGEACNECESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I Sbjct: 121 KYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 V D +S A + + +A +A G R A + +V F G I+ Sbjct: 180 ISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFT----GGNIT 235 Query: 244 ADIAAQALDMLNVDAE 259 + L++L+ + Sbjct: 236 YKSVIENLNVLDYEYY 251 >UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clostridium RepID=C9XIC8_CLODC Length = 545 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 25/253 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 RA RP+ E+ +GQ + ++ I + + L G G GKT+ A I + + Sbjct: 7 RAYRPQKFEDVIGQDHIIKTLKNQIYSDNIG----HAYLFCGTRGTGKTSTAKIFSRAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 + P E ++ + DV+ ID + + + E V Y PA Y+ Sbjct: 63 CLNKINEEPCNEC--EICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R + V Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYD-FKRVTV 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + + G+++ D +AR ++G R A +L + F E K I Sbjct: 180 KDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESK----IDYKD 235 Query: 247 AAQALDMLNVDAE 259 + + +N++ Sbjct: 236 VVELMGSVNIEQL 248 >UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N205_9FIRM Length = 640 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 37/287 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R+ RP+ E GQ + + ++ IK L GP G GKTT+A ++A + Sbjct: 8 RSYRPQTFGEVAGQEHIVTTLKNAIK----ENRISHAYLFAGPRGTGKTTVAKLLAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 + P + +T E DV+ ID + + ++++V Y P Y+ Sbjct: 64 CTGE--NPPCDQCPN--CKAITVGEHPDVIEIDAASNNGVDEVRDLIDKVKYAPINGKYK 119 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I M A ++ PP + ATT + + R QR +F +V Sbjct: 120 VYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISR---CQRFDFKKV 176 Query: 187 P--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + + + VA+ A G R A +L + + + ++ Sbjct: 177 ENHDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAY-----NNELTV 231 Query: 245 DIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNL 286 + +L++D + D K +L +D G + + L Sbjct: 232 ESVNMVYGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRL 278 >UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridiales RepID=C4ZB56_EUBR3 Length = 523 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 26/265 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A I A + Sbjct: 8 RKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTVAKIFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 P E +T +V+ ID + + + EEV Y E Y+ Sbjct: 64 CEHPVDGSPCGECPS--CRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYRPTEGRYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT A + + R + Sbjct: 122 VYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYD-FHRISI 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + +S +E+ + VA+ G+ R A LL + F ++ + Sbjct: 181 DTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAF---HLGEKLTYEN 237 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLA 271 + L VD E F + R++L Sbjct: 238 VLEVLG--AVDTEVFSRLLRRILDE 260 >UniRef50_P40151 DNA-dependent ATPase MGS1 n=12 Tax=Saccharomycetaceae RepID=WRIP1_YEAST Length = 587 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 111/298 (37%), Gaps = 64/298 (21%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV------ 75 +RPK L +YVGQ + SQ + ++ + ++++GPPG+GKT+LA ++ Sbjct: 138 KLRPKELRDYVGQQHILSQDNGTL-FKYIKQGTIPSMILWGPPGVGKTSLARLLTKTATT 196 Query: 76 --------ANEMGVNLRTTSGPVLEKAGDLAAMLTN---LEPHDVLFIDEIHRLSPVVEE 124 + + T E G + VLFIDEIHR + V ++ Sbjct: 197 SSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQD 256 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLE 182 +L P +E+ + LIGATT S L + L R I LE Sbjct: 257 LLLPHVENGDI--------------------ILIGATTENPSFQLNNALISRCLIFV-LE 295 Query: 183 FYQVPDLQYIVSRSARFMG------------LEMSDDGALEVARRARGTPRIANRLLR-- 228 V +L ++SR + L++S V + G R A +L Sbjct: 296 KLNVNELCIVLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLEMI 355 Query: 229 RVRDFAEVKHDGTISADIAAQALDM-----LN--VDAEGFDYMDRKLLLAVIDKFFGG 279 V + +S D + LN D +G ++ D + A GG Sbjct: 356 EVSTRERKADEEELSIDDVRDIIKNNSSNGLNTYYDPKGDNHYD--TISAFHKSIRGG 411 >UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHM0_KOSOT Length = 503 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 33/297 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +V R RPK EE VGQ QV+ ++ I+ + + FGP G GKTT A I+ Sbjct: 5 AEVLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSI----AHAYIFFGPRGTGKTTTARIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + L P + +A + N DV+ ID I + + + Y P Sbjct: 61 AKALNC-LSHDDKPCGKCESCIA--VDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPT 117 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 M Y++ I + E A ++ PP I ATT + + R + Sbjct: 118 MGHYKVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVF-TF 176 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + R + + + +A+ A+G R A LL R F E Sbjct: 177 KPLSEGQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFGE-----K 231 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 I D L +L + + L+A+++ + L +G +++ Sbjct: 232 IEEDNVKNILGILP------EEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVI 282 >UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YCC7_DICT6 Length = 521 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 29/249 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ EE VGQ + ++ ++ + L GP G GKTT+A I+A + Sbjct: 7 RKWRPQTFEEVVGQEHIVITLQNSLRYNHIG----HAYLFAGPRGTGKTTIARILAKALN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPH--DVLFID-----EIHRLSPVVEE-VLYPAMED 132 GP + + E DV+ ID I + + E+ L P + Sbjct: 63 C----VQGPTPTPCLKCESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDR 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R Sbjct: 119 YKVYIIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFD-FRRL 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ +++ A G ++S+ +A +++G+ R A LL ++ ++ D I+ Sbjct: 178 TRDEVIKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYS----DQEITE 233 Query: 245 DIAAQALDM 253 ++A L + Sbjct: 234 ELARNLLGL 242 >UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Bacteroidales RepID=C3QNI8_9BACE Length = 621 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 97/279 (34%), Gaps = 34/279 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP E VGQ + + ++ I KL L GP G+GKTT A I A Sbjct: 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKL----AHAYLFCGPRGVGKTTCARIFAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA-ME 131 + T G + A +++ +D + + +VE+V P + Sbjct: 62 TINCMTPTADGEACNQCESCVA-FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I Sbjct: 121 KYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 V D +S A G+ + +A +A G R A + +V F G I+ Sbjct: 180 ISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT----GGNIT 235 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG 282 L++L D + + D F V Sbjct: 236 YKSVIDNLNVL----------DYEYYFRLTDCFLENKVS 264 >UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacillales RepID=C2H810_ENTFC Length = 581 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 113/315 (35%), Gaps = 41/315 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R R + E+ VGQ V ++ I + L GP G GKT+ A I A + Sbjct: 8 RVWRSQRFEDIVGQKAVTQTLKNAI----VSHKTSHAYLFTGPRGTGKTSAAKIFAKAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EI----HRLSPVVEEVLYP 128 P E ++ +T DV+ ID EI R + + Y Sbjct: 64 CPNSKDGEPCNEC--EMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYK 121 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 ++ ++ A ++ P I ATT + + + R QR +F ++ Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISR---TQRFDFKRI 178 Query: 187 P--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + + + +AR A G R A +L + F+E GTI+ Sbjct: 179 NTADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSE----GTITL 234 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI---GEERETIEDVL 301 D A Q L D M L A + K P L+ L + E R +ED+L Sbjct: 235 DDAMQVTGSLT------DEMMDSYLSACVKK--EVPEALEALNQILAAGKESRRFLEDML 286 Query: 302 EPYLIQQGFLQRTPR 316 + Y Q+ P Sbjct: 287 Q-YCRDLLMYQQAPN 300 >UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU40_DESOH Length = 570 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 25/252 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ EE V Q QV + I + ++ +L GP G GKTT+A I+A Sbjct: 5 VLARKYRPQTFEEVVEQQQVTRTLTNAIASGRV----AHAILFTGPRGTGKTTIARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEE-VLYPAME 131 M T P L + + DV ID + ++ + PA Sbjct: 61 AMNCEKGPTPTPCCACRSCLE--IASGNATDVFEIDGASNNSVDQVRELRGNVKFMPAHS 118 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + G A ++ PP ATT + + R L F Sbjct: 119 PYKIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQRHD-LSF 177 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + L + + + +A A G+ R + LL +V A+ G +S Sbjct: 178 VGIDPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQ----GPVS 233 Query: 244 ADIAAQALDMLN 255 ++ +AL +++ Sbjct: 234 HEMVLEALGIID 245 >UniRef50_A6DHI5 ATPase, AAA family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHI5_9BACT Length = 430 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 103/278 (37%), Gaps = 43/278 (15%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E +A +RP+ ++ GQ + ++ + ++ + D ++ GPPG GKT+LA+I+ Sbjct: 10 EPLAA-TLRPEGFGDFFGQGHLTAEGSLLRRS--IENDCFSSIIFTGPPGTGKTSLASII 66 Query: 76 ANEMGVNLRTTSG------PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPA 129 + + S V + VLF+DEIHR + ++ L Sbjct: 67 SKHTEADFIALSAIDSSVSEVRKAVKAADEARKFSGRKTVLFVDEIHRFNKAQQDSLLKD 126 Query: 130 MEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVP 187 +E+ + IGATT LT L R ++ L+ + Sbjct: 127 IENGTVR--------------------FIGATTHNPGFYLTPALCSR-SLIFTLKPLEAS 165 Query: 188 DLQYIVS----RSARFMGLEM--SDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ ++ + + + E+ ++G ++ G R A ++ A+ Sbjct: 166 AVKSLLEAKMTKIMKALEAELQFDEEGLKFLSENCEGDARRALTVIELAVKTAQSDK--- 222 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 I + + L + + + + + A I G Sbjct: 223 IGLEELRECLQVKSYKYDADAHYNA--ASAFIKSMRGS 258 >UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 Tax=Firmicutes RepID=D1BPK5_VEIPT Length = 895 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 31/250 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF-GPPGLGKTTLANIVANEM 79 R RP+ + VGQ QV + +R D + H +F GP G GKT++A I A + Sbjct: 8 RKYRPQTFTDVVGQHQVSDTL-----MRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAI 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAMEDYQ 134 T P E + + + + DVL ID I + + E V + +E + Sbjct: 63 NCEHGPTDHPCNECSA--CRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRK 120 Query: 135 -------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ E A I+ PP I ATT L + R QR F + Sbjct: 121 KVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSR---CQRYTFRR 177 Query: 186 V--PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + D+ +S A G ++ A +A A G R A +L + A G+I+ Sbjct: 178 ITSDDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMAT----GSIT 233 Query: 244 ADIAAQALDM 253 + + + + Sbjct: 234 PQVVEELIGL 243 >UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subunits n=3 Tax=Bacillus RepID=A8FAE4_BACP2 Length = 570 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 108/313 (34%), Gaps = 33/313 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP++ E+ VGQ + + + A L+ L GP G GKT+ A I A + Sbjct: 8 RVFRPQVFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI--------DEIHRLSPVVEEVLYPAMED 132 S P E D +TN DV+ I DEI + V P+ Sbjct: 64 CEKSPVSEPCNEC--DACKGITNGSISDVIEIDAASNNGVDEIRDIRDKV--KFAPSAVT 119 Query: 133 YQLDIMIGE------GPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I+ A ++ PP I ATT + + R + Sbjct: 120 YKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFD-FKRI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA----EVKHDG 240 D+ + + L + + +A A G R A LL + F+ + Sbjct: 179 TTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDAL 238 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 I+ ++ Q + L FD L + + G + I R+ + Sbjct: 239 LITGAVSQQFISQL--AEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYK 296 Query: 301 LEPYLIQQGFLQR 313 P L +G L++ Sbjct: 297 TAPDL--EGVLEK 307 >UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridium RepID=B8I549_CLOCE Length = 562 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 25/251 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP + E+ V Q V ++ +K+ ++ L G G GKTT+A I A + Sbjct: 8 RKWRPLVFEDVVEQEHVVRTIKNTVKSGRI----AHAYLFCGTRGTGKTTMAKIFARAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMEDYQ 134 P E ++ + + DV+ ID + + + +EV+Y P+ Y+ Sbjct: 64 CINPKDGNPCNEC--EVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT L + + R + Sbjct: 122 VYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFD-FKKITP 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + V A+ G+ + DDGAL +AR A G R A +L + + TI+ Sbjct: 181 AGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIA----EGSTTITYQN 236 Query: 247 AAQALDMLNVD 257 A+ +++ D Sbjct: 237 VLDAIGIVSDD 247 >UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URG8_AKKM8 Length = 732 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 111/314 (35%), Gaps = 39/314 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ +GQ V ++ I+ +L L GP G GKT+ A Sbjct: 1 MSYQVFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRL----AHAYLFVGPRGTGKTSTAR 56 Query: 74 IVANEMGVNLRTTSGP--VLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVL 126 I A + + GP + D+ + DVL ID I + + + V Sbjct: 57 IFAKALNCS----GGPKVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVR 112 Query: 127 YPAMED-------YQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 + ++ ++ E A ++ PP I ATT + + R Sbjct: 113 FAPSRGNFRIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRCQR 172 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 L + + A G+ +S + A VA+ A G R A +L ++ F Sbjct: 173 FD-LRPIPSEIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLDQLVSFCGDH 231 Query: 238 HD--------GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 + G S + A AL ++ + LL + ++ G L+ Sbjct: 232 IEEQQVLHIFGITSRETVAHALALI------LNKELPSLLHLLHEQAEAGRDMSQFLSEI 285 Query: 290 IGEERETIEDVLEP 303 I RE + ++P Sbjct: 286 ISAVREILVSKVDP 299 >UniRef50_Q9WYX8 UPF0189 protein TM_0508 n=15 Tax=cellular organisms RepID=Y508_THEMA Length = 599 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 59/333 (17%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 ++ E +RPK E++VGQ + I + K + +++GPPG GKT++ Sbjct: 2 SISEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGN--MFSSILYGPPGSGKTSVF 59 Query: 73 NIVANEMGVNLRTTSGPV-----LEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 +++ + S V ++ L +LF+DEIHRL+ + VL Sbjct: 60 SLLKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLV 119 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQ 185 +E + L+ TT S + L R I+ + Sbjct: 120 SHVERGDI--------------------VLVATTTENPSFVIVPALLSRCRILY-FKKLS 158 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 DL I+ ++ + +++ + + R + G R L Sbjct: 159 DEDLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTLE----------------- 201 Query: 246 IAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFG--GPVGLDNLAAAIGEERETIEDVLEP 303 I QA V + L ++ G D +A I R + + Sbjct: 202 IVHQAFKNKRV--------TLEDLETLLGNVSGYTKESHYDFASAFIKSMRGSDPNAAVY 253 Query: 304 YLIQQGFLQRTPR--GRMATTRAWNHFGITPPE 334 YL++ + PR R A G+ P Sbjct: 254 YLVKMIEMGEDPRFIARRMIIFASEDVGLADPN 286 >UniRef50_C4Y4G1 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y4G1_CLAL4 Length = 548 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 55/303 (18%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP L++YVGQ + + I + G L ++++GPPG+GKTTLA+I+A E Sbjct: 23 IRPSSLKDYVGQEHLIDSDDGAISSFLTLG-ILPSMILYGPPGVGKTTLAHILAAETNHV 81 Query: 83 LRTTSG--PVLEKAGDLAAMLTN----------LEPHDVLFIDEIHRLSPVVEEVLYPAM 130 S + +++ + L V+FIDEIHR S ++ L P + Sbjct: 82 FLELSATDSTIGDMREISQAIRQENGKRDRSGDLHLKVVVFIDEIHRFSTTQQDFLLPFV 141 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPD 188 E F IGATT + + R + L + Sbjct: 142 EAG--------------------DFVFIGATTVNPEKRIRRAILSRCQLFS-LRKLDIQH 180 Query: 189 LQYIVSRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRD----- 232 + ++ +++ ++ S + VA A G R A + + Sbjct: 181 IVKVLQKASLHENIRRKKLKGLKFIQYSTEAFQLVASYANGDTRSAINFIELISSRMEGD 240 Query: 233 ---FAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 +E ++ + + + ++ L G + + + ++A + G + ++ + Sbjct: 241 DWLLSENEYKKPVDIHVVQETINSLTKVRLGLQHQENEPIVAALFDSMNGGLSASSILPS 300 Query: 290 IGE 292 G+ Sbjct: 301 KGD 303 >UniRef50_B3H0C6 Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0C6_ACTP7 Length = 137 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 100/120 (83%), Positives = 107/120 (89%), Gaps = 3/120 (2%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 MIEADR+ISA E++ DRAIRPKLL +YVGQP VR QMEIFIKAAKLR +ALDHLLI Sbjct: 1 MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLI 60 Query: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEI---HR 117 FGPPGLGKTTLANIVANEMGVN+RTTSGPVLEKAGDLAAMLTNLEP+DVLFIDEI HR Sbjct: 61 FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIPAYHR 120 >UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JMX9_9BACE Length = 623 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 34/279 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + + ++ I KL L GP G+GKTT A I A Sbjct: 6 VSARKYRPATFDTVVGQRALTTTLKNAIANQKL----AHAYLFCGPRGVGKTTCARIFAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA-ME 131 + T G + + +++ +D + + ++E+V P + Sbjct: 62 TINCLHPTADGEACNEC-ESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I Sbjct: 121 KYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 V D + AR +E + +A++A G R A + +V F +G I+ Sbjct: 180 ISVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFT----NGHIT 235 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG 282 + L++L D + + D F V Sbjct: 236 YQSVIENLNVL----------DYEYYFKLTDAFLENRVS 264 >UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0W5_SYNWW Length = 499 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 30/299 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 RA RP+ E VGQ + + + ++ KL L GP G GKT++A I+A + Sbjct: 8 RAWRPRRFAEVVGQEKTVTALRNAVREGKLS----HAYLFSGPRGTGKTSIAKIIAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE-VLYPAMEDYQ 134 + P + + + N DV+ ID I + + E+ + PA + Sbjct: 64 CENLSEGEPCNQCSS--CQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKNK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A I+ PP I ATT + + + +R R + Sbjct: 122 VYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYN-FRRLTT 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 ++ +S A G+ + + L +ARRA G R A +L ++ + K + +IS Sbjct: 181 AEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSY---KGNNSISKQD 237 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYL 305 + + ++ D +L+ AV+ + +G+ A + G+E + + +L Sbjct: 238 VLEVMGLV------DDAFMAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAREASMFL 290 >UniRef50_A1SJC4 Recombination protein MgsA n=2 Tax=Actinobacteria (class) RepID=A1SJC4_NOCSJ Length = 456 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 127/340 (37%), Gaps = 54/340 (15%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 +SA T +A R +RP+ L+E VGQ Q+R+ + + GD LL++GPPG G Sbjct: 20 LSANTHASAPLAVR-MRPRTLDELVGQAQLRAAGSPLRRL--VEGDQSMSLLLWGPPGTG 76 Query: 68 KTTLANIVANEMGVNL---RTTSGPVLEKAGDLAAMLTNL---EPHDVLFIDEIHRLSPV 121 KTT+A IV+ + S V E + A L VLF+DE+HR S Sbjct: 77 KTTIAAIVSQQTDRRFVEVSAVSAGVKEVRAAIDAARAELAGGGRETVLFVDEVHRFSKA 136 Query: 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTS-PLRDRFGIVQR 180 ++ L P +E+ TLI ATT + ++ R Sbjct: 137 QQDALLPGVENRW--------------------VTLIAATTENPFFSVISPLLSRSLLLR 176 Query: 181 LEFYQVPDLQYIVSRSARFM-----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 LE D++ ++ R+ + + DD + R A G R + L A Sbjct: 177 LESLDDDDVRAVLDRAITDERGLAGSVGVDDDALGHLVRLAGGDARRSLTYLEAAAGAAL 236 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 + T+ A A+D V DR+ G D ++A I R Sbjct: 237 AQGLETVDLATAETAVDRAAV------RYDRQ-----------GDQHYDVVSAFIKSVRG 279 Query: 296 TIEDVLEPYLIQQGFLQRTPR--GRMATTRAWNHFGITPP 333 + D YL + PR R A G+ P Sbjct: 280 SDADAALHYLARMIEAGEDPRFIARRLMILASEDVGLADP 319 >UniRef50_A2QW62 Function: WHIP of M. musculus is involved in aging control n=3 Tax=Aspergillus RepID=A2QW62_ASPNC Length = 513 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 113/313 (36%), Gaps = 49/313 (15%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +A++ +RP+ ++ VGQ + + + D L +L+++GPPG GKTT+A I+ Sbjct: 104 APLAEQ-VRPRCFDDIVGQKSLIGPNGTLRRL--IEQDELPNLILWGPPGSGKTTIARII 160 Query: 76 ANEMGVNLRTTSG--PVLEKAGDL-AAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMED 132 M + S + + D+ + ++F DEIHRL+ +++ AM Sbjct: 161 GPMMRRKVYEISSLTTITTEYRDIVTKATHDGRNKSIIFCDEIHRLTRPQQDIFLDAMRR 220 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP----- 187 ++ TLIGATT SL +V + + V Sbjct: 221 NKI--------------------TLIGATTENPSLN----IHHTLVYKCRVFTVAKPTTT 256 Query: 188 DLQYIVSRSA-----RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 DL I+ RS + D+ +A A G R A +L D + Sbjct: 257 DLATILRRSLISQTHLKSSPLLDDEFLQYIAGFADGDSRTALNVLEIATDLC--RRPNMT 314 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + L D G + D + A+ G AA+ ++ Sbjct: 315 KEKLKYSLTKSLLYDRSGDQHYD--TISALHKSIRGSDPD-----AALYYLVRMLQSGEN 367 Query: 303 PYLIQQGFLQRTP 315 P I + + T Sbjct: 368 PLFIARRLIVATS 380 >UniRef50_C4R299 Protein with DNA-dependent ATPase and ssDNA annealing activities involved in maintenance of genome n=1 Tax=Pichia pastoris GS115 RepID=C4R299_PICPG Length = 525 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 111/318 (34%), Gaps = 71/318 (22%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RPK LEEYVGQ + + + GKT+LA I+A Sbjct: 111 PLAER-LRPKTLEEYVGQSHLVGPTGVLRGSN------------------GKTSLARIIA 151 Query: 77 NEMG---VNLRTTSGPVLEKAGDLAAMLTNL---EPHDVLFIDEIHRLSPVVEEVLYPAM 130 V L TS + E + + VLF DEIHR + ++ P + Sbjct: 152 ASTHNRCVELSATSSGISECRKVFEEARNEMRLTKRRTVLFCDEIHRFNKSQQDAFLPYV 211 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 E + LIGATT S L S L R + L D Sbjct: 212 ERGDI--------------------ILIGATTENPSFQLNSALLSRCRVFV-LNKLDNED 250 Query: 189 LQYIVSRSARFMG-----------LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 L +V+RS + L ++ + + A G R A L+ V D K Sbjct: 251 LAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALNLVEMV-DSHYQK 309 Query: 238 HDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 +D T +A + VD + R AV D+ G D ++A R + Sbjct: 310 NDDTTAASV--------EVDPSTLREVLRST-HAVYDRV--GDQHYDAISAFHKSVRGSN 358 Query: 298 EDVLEPYLIQQGFLQRTP 315 D YL + P Sbjct: 359 VDATLYYLARMLHGGEDP 376 >UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 Tax=Lactobacillales RepID=A5VIC2_LACRD Length = 611 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 115/316 (36%), Gaps = 45/316 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ VGQ V ++ I + L GP G GKT+ A I A + Sbjct: 8 RVWRPQRFDDLVGQQIVTRTLKNAI----ITHQISHAYLFAGPRGTGKTSAAKIFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVEEVLYPAMED 132 + P E ++ +TN + +DV+ ID EI + P D Sbjct: 64 CHHSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDK--AKYAPTQAD 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + R VQR +F Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISR---VQRFDFR 176 Query: 185 QV--PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ D + + + +A A G R A +L +V F+ D + Sbjct: 177 RISAEDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFS----DNEV 232 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET---IED 299 D D L V + +K L + G LD + + E ++ IED Sbjct: 233 KLD------DALLVTGSVTKQLLKKYFLEISKH--EGATALDTMKDILDEGKDGQRFIED 284 Query: 300 VLEPYLIQQGFLQRTP 315 ++ ++ Q +P Sbjct: 285 LI-SFIRDILLYQESP 299 >UniRef50_A5V4N3 Recombination protein MgsA n=171 Tax=Bacteria RepID=A5V4N3_SPHWW Length = 481 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 107/275 (38%), Gaps = 42/275 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +A+R +RP+ L + +GQ + + + L L+++GPPG GKTT+A ++A Sbjct: 63 PLAER-LRPRTLADVIGQEHLTGPEGAIGRM--VAAGRLSSLVLWGPPGTGKTTIARLLA 119 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH------DVLFIDEIHRLSPVVEEVLYPAM 130 + +G+ S V DL + H +LF+DEIHR + ++ P + Sbjct: 120 DAVGLRFAPVSA-VFSGVADLKKIFAEAREHARIGTRTLLFVDEIHRFNRAQQDSFLPYV 178 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 ED L+GATT S L + L R ++ L Sbjct: 179 EDGT--------------------VVLVGATTENPSFELNAALLSRAQVLI-LNRLDAAA 217 Query: 189 LQYIVSRSARFMG--LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK--HDGTISA 244 L +++R+ L +++ + A G R + A G ++A Sbjct: 218 LGKLIARAEEIEERALPLTEGAREALVASADGDGRFLLNQAETLFSIAIDHPLEPGELAA 277 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 + + + + + D EG L+ A+ G Sbjct: 278 -LLHRRMAVYDKDREG----HYNLISALHKSLRGS 307 >UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMH2_MOOTA Length = 589 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 109/310 (35%), Gaps = 39/310 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E VGQ + + ++ +L + L GP G GKT+ A I+A + Sbjct: 9 RQWRPRTFAEVVGQEHITRTLRNALRTGRL----VHAYLFCGPRGTGKTSTAKILARAIN 64 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPAMEDYQ 134 P E A + DVL +D I + ++E++ L P Y+ Sbjct: 65 CLAPREGEPCNECAN--CRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPVEGRYK 122 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP I ATT + + R V Sbjct: 123 VYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFD-FHPLTV 181 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + A G+E+ ++R+A G R A LL ++ G ++A Sbjct: 182 QAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASGTR---GPVTAGQ 238 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 A L +D LLA+ D G A + + + +EP + Sbjct: 239 VAVTLGTARLD----------TLLALTDALATGDG-----AGVLNLVDKALASGIEPRRL 283 Query: 307 QQGFLQRTPR 316 + L T Sbjct: 284 LEDLLDHTRN 293 >UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR83_9FIRM Length = 638 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 62/306 (20%), Positives = 108/306 (35%), Gaps = 39/306 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP +E +GQ + I I A + L GP G GKT++A I+A + Sbjct: 8 RKWRPSTFKEIIGQKHI----SIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE-VLYPAMEDYQ 134 P E A + DV ID + + + E P + + Sbjct: 64 CLDLKNGNPCNECAN--CKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNKK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP I ATT + + R + V Sbjct: 122 VYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYE-FHRISV 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D++ + ++ L ++ + A +A RA G R A LL + + +SA+I Sbjct: 181 NDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASA---GNELSAEI 237 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 L + D++ ++ + G +A + + ++D EP I Sbjct: 238 VYDLLGL----------TDKEQIIDLFHMIVCGKS-----SATLQLFYKILQDGKEPSAI 282 Query: 307 QQGFLQ 312 L+ Sbjct: 283 LSDLLE 288 >UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPA0_9FIRM Length = 743 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 22/236 (9%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R R +E + Q + + ++ IKA G L G G GKTT A ++A + Sbjct: 7 RKYRSATFDEVISQEHITTTLKNQIKA----GTPAHAYLFTGSRGTGKTTCAKLMAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 P E D++ +D + + + +EV+Y P + Y+ Sbjct: 63 CLSPVDGNPCGECESC---KAIAAGCPDIIEMDAASNNGVDDVRALRDEVMYAPTVCRYK 119 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + + A I+ PP I ATT + + + R R V Sbjct: 120 VYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQF-RFSRIDV 178 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + + A+ + +++D A ++R + G R A LL + + + T+ Sbjct: 179 EESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSADIDEETV 234 >UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=root RepID=Q2LYB8_SYNAS Length = 588 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 21/247 (8%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP++ E+ VGQ V ++ I+ ++ L GP G+GKT++A I+A Sbjct: 5 VLARKWRPQVFEDVVGQQHVVQTLKNAIRQERI----AHAFLFSGPRGVGKTSIARILAK 60 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE-VLYPAME 131 + P +T DV ID I + + E P Sbjct: 61 AINCEQGPAGTPCNVCTN--CREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSC 118 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + E A ++ PP I ATT + + + R Sbjct: 119 RYKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQ-CFEFRR 177 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + + + + A + +SD G +A G+ R + + +V +A + Sbjct: 178 LSLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAV 237 Query: 244 ADIAAQA 250 ++ + Sbjct: 238 EELLGRT 244 >UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 Tax=Exiguobacterium RepID=B1YGC8_EXIS2 Length = 561 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 25/244 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ +E VGQ + I+ A + L GP G GKT+LA I+A + Sbjct: 8 RVYRPQRFDEVVGQAHITRT----IQNALMEERMSHAYLFSGPRGTGKTSLAKIIAKAIN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 + P E +T DV ID + + + ++V YP E Y+ Sbjct: 64 CEQAPVNEPCNECP--TCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYPPSEAAYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R ++ ++V Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFD-VKRHEV 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 L + + ++ +AR A G R A LL + F+ +G ++ D Sbjct: 181 DQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFS----NGDLTDDA 236 Query: 247 AAQA 250 + Sbjct: 237 VLEV 240 >UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B5_LYSSC Length = 636 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 27/274 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ + +GQ V++ +E IK K+ L GP G GKT+ A I A Sbjct: 7 VLYRKYRPQGFDNLIGQNHVKNTLENSIKHNKV----AHAYLFTGPRGTGKTSAAKIFAK 62 Query: 78 EMGVNLRTTSGPVLE--KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 + P E D + ++ +D+I L V PA ++ Sbjct: 63 LLNCQSPIDYNPCGECVCCQDSNTDIIEMDAASNNGVDDIRDLREKV--NYAPAFGKKKV 120 Query: 136 DI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV- 186 I + A ++ PP I ATT + + + R QR +F ++ Sbjct: 121 YIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSR---CQRYDFRRIS 177 Query: 187 -PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 D+ + + +E+ + +++ A G R A LL + K +G ++ Sbjct: 178 QDDIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAIS----KVEGKVTLQ 233 Query: 246 IAAQALDMLNVDAEG--FDYMDRKLLLAVIDKFF 277 + ++ G Y+++ + ++ F Sbjct: 234 DIIEITGAVDTRKIGTLIQYINQSNIEGALEHFN 267 >UniRef50_A4EPD3 ATPase n=3 Tax=Rhodobacteraceae RepID=A4EPD3_9RHOB Length = 437 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 109/281 (38%), Gaps = 32/281 (11%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 L G A+RP+ L+E VGQ + ++ + + ++ + L ++++GPPG+ Sbjct: 4 LFDVGREQENQPLAAALRPRSLDEVVGQKTLTAKGSVLRR--RIAANQLGSIVLYGPPGV 61 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVL-FIDEIHRLSPVVEEV 125 GKT++A V + + D+ + +L F+DE+HR S + Sbjct: 62 GKTSIARAVGEMLNKEFKQLHAT-RAGVKDIRQLADEARIRPILIFVDEVHRFSATQADD 120 Query: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEF 183 L E+ D IGATT+ +L L R I+ +LE Sbjct: 121 LLSICEEGTAD--------------------FIGATTQNPYTALPKALVSRSTIL-KLEP 159 Query: 184 YQVPDLQYIVSRSARFM-----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 + D++ +++R + + ++ + +A R+ G R A L + Sbjct: 160 IAIEDMEAVLARGLEHLAEMGIEVVLAPEQLRIIAGRSGGDARSALTTLESLAIGHGDSG 219 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 ++ D+ + V+ + ++ A I GG Sbjct: 220 SVKVTDDMLEEVYRAAPVNHDRSGDQHYDIISAFIKSMRGG 260 >UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 Tax=Alkaliphilus RepID=A8MKQ3_ALKOO Length = 563 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 26/260 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK+ E+ +GQ QV + ++ I ++ + L G G GKT+ A I A + Sbjct: 8 RRFRPKVFEDVIGQDQVITILKNQISSSNI----AHAYLFTGTRGTGKTSTAKIFARAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME-DYQ 134 + P + ++ + DV+ ID + + + E V YP + Y+ Sbjct: 64 CLSAEDANPCNQC--EVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYPPSKGKYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R + ++ Sbjct: 122 IYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFD-FKPVRI 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 D+ + +G++ ++ +A + G R A +L + + E T++ Sbjct: 181 NDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTE----DTLTYTN 236 Query: 247 AAQALDMLNVDAEGFDYMDR 266 L M+N FD +D+ Sbjct: 237 VVNILGMVN-YEFIFDLVDK 255 >UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79 Tax=Bacillaceae RepID=Q65PK1_BACLD Length = 566 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 114/316 (36%), Gaps = 45/316 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+L E+ VGQ + + + A L+ L GP G GKT+ A + A + Sbjct: 8 RVFRPQLFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI--------DEIHRLSPVVEEVLYPAMED 132 S P E + +TN DV+ I DEI + V P+ Sbjct: 64 CERAPVSEPCNECSA--CKGITNGSISDVIEIDAASNNGVDEIRDIRDKV--KFAPSAVT 119 Query: 133 YQLDIMIGE------GPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I+ A ++ PP I ATT + + R QR +F Sbjct: 120 YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISR---CQRFDFK 176 Query: 185 QV--PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ + + + L++ D +A A G R A LL + F+ + Sbjct: 177 RITSQAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFS----GEEL 232 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG---EERETIED 299 + D D L + + KL + +K G L+ L + + + IED Sbjct: 233 TVD------DALLITGAVSQHYIGKLASTLHEKNVSGA--LETLNELLQQGKDPAKLIED 284 Query: 300 VLEPYLIQQGFLQRTP 315 ++ Y Q P Sbjct: 285 MI-FYFRDMLLYQTAP 299 >UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus RepID=A8W2Q1_9BACI Length = 600 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 102/282 (36%), Gaps = 35/282 (12%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP++L++ VGQ + + + A L+ L GP G GKT+ A I+A + Sbjct: 8 RVWRPQVLKDVVGQEHITRTL----RNALLQQKLSHAYLFSGPRGTGKTSAAKIIAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAM--LTNLEPHDVLFI--------DEIHRLSPVVEEVLYPAM 130 PV E + + + DV+ I DEI + V P+ Sbjct: 64 CE----QAPVEEPCNTCSTCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKV--KFAPSG 117 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + A ++ PP I ATT + + R QR + Sbjct: 118 ASYKVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISR---CQRFD 174 Query: 183 FYQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE--VKH 238 F ++ + + L + D +AR + G R A LL + +A+ V Sbjct: 175 FKRITAHTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYADTSVTL 234 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP 280 D +S AA M +V D L A+ G Sbjct: 235 DDVLSIIGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGK 276 >UniRef50_C8WQ66 DNA polymerase III, subunits gamma and tau n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ66_ALIAD Length = 586 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 26/244 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 RA RP+ E+ VGQP VR + +K+ +L L GP G GKT+ A ++A + Sbjct: 8 RAYRPQTFEDLVGQPHVRQTLTNALKSGQL----AHAYLFCGPRGTGKTSTAKLLAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAM-------LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 ++ + ++ +DEI L V P M Sbjct: 64 CLQPRDGFEPCNACEACTSIQRGSNVDVQEIDAASNRGVDEIRDLRDHV--HYLPTMAKK 121 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + E A ++ PP + ATT L + + R QR +F + Sbjct: 122 KVYIVDEVHMLTPEAFNALLKTLEEPPAHVLFVLATTEPHRLPATIISR---CQRFDFRR 178 Query: 186 V--PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + + + A+ G+E +D +A A G R A L + F + D T Sbjct: 179 IAPEAIVERLRLVAQSQGIEAADSALWRLAEAADGGLRDALALFEQAAAFGNGRIDDTTV 238 Query: 244 ADIA 247 AD+ Sbjct: 239 ADVV 242 >UniRef50_C8W8W3 DNA polymerase III, subunits gamma and tau n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8W3_ATOPD Length = 755 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 98/284 (34%), Gaps = 35/284 (12%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 RP+ E+ VGQ V + K A L L GP G GKTT+A ++A + Sbjct: 7 KYRPQTFEQVVGQKHVVGTL----KRAVLEQKLSHAYLFCGPRGTGKTTMARLLAKAILC 62 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVV--EEVLYPAMEDYQ 134 + G + + + ++ + DV ID + + + P + Sbjct: 63 H--EAPGHLPDGTCEDCQLIAAGQHPDVFEIDAASNTGVDNVREEIISRASYAPVCGKGK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP T I TT + + + R VQR +F + Sbjct: 121 VYIIDEVHMLTSAAFNALLKTLEEPPSHVTFIMCTTDPQKILATILSR---VQRFDFRSI 177 Query: 187 --PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ + + G D + R ARG R A L ++ + G IS Sbjct: 178 AADEMAEHLISVCKNEGFTYEDAAIDLIVRYARGGMRDALSSLEQLSVY----GGGVISE 233 Query: 245 DIAAQALD-----MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL 283 L ++N A D L ++ F G L Sbjct: 234 QTVRDVLGQSSGSLINSAALALAQRDISSLFTTVNTLFEGGKDL 277 >UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH32_BDEBA Length = 621 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 38/317 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 L V R RP+ + VGQ + + +K +L LL GP G GKT+ A Sbjct: 17 LSYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRL----PHALLFTGPRGTGKTSSAR 72 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + P + + DV+ ID + + + + V + Sbjct: 73 ILAKALRCPNAQNFVPCNDCYS--CNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFM 130 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + R Q Sbjct: 131 PSSGKYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSR---CQ 187 Query: 180 RLEFYQVP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 R +F ++ + + G+ D+ VAR+ G+ R + LL +V FA Sbjct: 188 RFDFRRISTRSITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFA--- 244 Query: 238 HDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-LDNLAAAIGEERET 296 +G ++ + L + + + L A+ID+ + ++ +AAA E Sbjct: 245 -NGPLTRASVVEILGLT------DRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLY 297 Query: 297 IEDVLEPYLIQQGFLQR 313 +D+LE +I+ L + Sbjct: 298 SQDLLE--MIRNLLLIK 312 >UniRef50_B1KXC3 ATPase, AAA family n=17 Tax=Clostridium RepID=B1KXC3_CLOBM Length = 416 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 57/331 (17%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +AD +RPK LE++VGQ + S+ + ++ ++ + + +GPPG GKTTLANI+A Sbjct: 3 PLADL-MRPKKLEDFVGQKHILSENKPLYNL--MKNKSICNSIFYGPPGTGKTTLANIMA 59 Query: 77 NEMGVNLRTTSGPV--LEKAGDLAAMLTNLEPHD--VLFIDEIHRLSPVVEEVLYPAMED 132 N + + ++ ++ + + +L + VL+IDE+ + ++ L +ED Sbjct: 60 NYVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIED 119 Query: 133 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQ 190 + LI +TT + + R I Q + D+ Sbjct: 120 GR--------------------VILIASTTENPYFVIHKAILSRCNIFQ-FKPLNREDII 158 Query: 191 YIVSRSARFM-----GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 + ++ + ++ S + + +G R A +L + + I+ D Sbjct: 159 LGLEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNI-EITLD 217 Query: 246 IAAQALDMLNV--DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 ++L N+ DA G +Y + ++ F G D AA R Sbjct: 218 YI-ESLAQSNIRADATGDEYYN------ILSAFQKSIRGSDADAAVHYLAR--------- 261 Query: 304 YLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 LI+ G + T R + G+ P Sbjct: 262 -LIKSGDI--TSITRRLSVMVAEDIGLAYPN 289 >UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=Peptococcaceae RepID=A5D6B1_PELTS Length = 558 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 29/253 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E +GQ + ++ ++A ++ + G G GKTT A ++A + Sbjct: 8 REWRPRTFGEIIGQEHITRTLKNAVEAGRVG----HAYIFCGARGTGKTTAAKVLAKALN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 R + P + + DV+ ID I + + E++ + PA Y+ Sbjct: 64 CTGREGAEPCNRC--ESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRYR 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + E A ++ PP LI ATT + + R QR +F ++ Sbjct: 122 VYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSR---CQRFDFRRI 178 Query: 187 --PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + A LE+ ++ +AR A G R A +L + F +K ++ Sbjct: 179 IPADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMK----VTE 234 Query: 245 DIAAQALDMLNVD 257 Q L + D Sbjct: 235 AGVHQILGTVRTD 247 >UniRef50_C7M8P5 DNA polymerase III, subunits gamma and tau n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8P5_CAPOD Length = 569 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 30/293 (10%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ + VGQ + + + I+ L LL GP G+GKTT A I+A Sbjct: 6 VSARKYRPQSFRDVVGQQAITNTLLNAIENNHLAQ----ALLFTGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137 ++ TSG +E D A + L+ +D+I +L + + + P + Y++ I Sbjct: 62 KINEQ---TSG--VEDENDFAFNVFELDAASNNSVDDIRKL--IEQVRIPPQVGKYKVYI 114 Query: 138 ------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDL 189 + A ++ PP I ATT + + R I + + D+ Sbjct: 115 IDEVHMLSTAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFD-FKRITINDI 173 Query: 190 QYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQ 249 + + A G+E D+ +A++A G R A + RV F+ I+ ++ Sbjct: 174 REYLKYIAEQQGIEAEDEALQIIAQKADGAMRDALSIFDRVVSFS----GEKITRQATSE 229 Query: 250 ALDMLN------VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 L++L+ V D +LL+A D G G +A R+ Sbjct: 230 ILNVLDYEVYFKVTDLILDNKLPELLIAFNDSIAQGFDGNHFIAGLASHFRDL 282 >UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 Tax=Ammonifex degensii KC4 RepID=C9RAG1_AMMDK Length = 427 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 104/268 (38%), Gaps = 35/268 (13%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 E RA RP+ + VGQ V + + ++ L GP G GKT+ A I Sbjct: 3 EEQALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRI----AHAYLFAGPRGTGKTSTARI 58 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPH--DVLFID-----EIHRLSPVVEEVLY 127 +A + GP L+ +E DVL ID I + + E V Sbjct: 59 LAKALNC----LQGPTPVPCDTCPQCLSIMEGTSLDVLEIDAASRRGIDEMRELRERVRL 114 Query: 128 PAM-EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 + Y++ I + E A ++ PP I ATT + + R Sbjct: 115 SPVHSRYKVYIIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSR---C 171 Query: 179 QRLEFYQVPD--LQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 QR +F ++P ++ ++R A +++ + +A+ A G+ R A LL + +AE Sbjct: 172 QRFDFRRLPTALIEEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAE- 230 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYM 264 G + A A L V ++ + M Sbjct: 231 ---GELRAIDVADLLGK--VPSQALEEM 253 >UniRef50_UPI0000DB7733 PREDICTED: similar to Werner helicase interacting protein isoform 1 n=2 Tax=Apocrita RepID=UPI0000DB7733 Length = 433 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 104/290 (35%), Gaps = 54/290 (18%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG- 80 +RP +Y+GQ +V I + L + ++ +GPPG GKT+L NI++ Sbjct: 18 KMRPACFHDYIGQEKVVGSNTILQQL--LTKGHIPSMIFWGPPGCGKTSLTNIISKISKE 75 Query: 81 --------VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI-DEIHRLSPVVEEVLYPAME 131 +NL TS V + T + + ++ I D+IHR + + +++ P +E Sbjct: 76 MHGEKVNIINLSATSSGVSNIKNIINKTKTESKFNQIIVIMDKIHRFNKLQQDIFLPHVE 135 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDL 189 FTLIG TT SL S L R I L + ++ Sbjct: 136 TGT--------------------FTLIGTTTENPSYSLNSALLSRCRIFA-LNKLTMLNI 174 Query: 190 QYIVSRSARFMGLE---------------MSDDGALEVARRARGTPRIANRLLRRVRDFA 234 I+ ++ + E ++ +A G R+A L Sbjct: 175 VEILCKAISSINGEIYNFSLKNFSKPHFFINKTAIDWLAEVCDGDARVALNDLELAIKIK 234 Query: 235 EVKHDG----TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP 280 +I+ + +++ ++ ++ + L A+ G Sbjct: 235 ISNKLNSNFVSITLEDVKESVKQTHMLSDKQSNNIQHLYSALHKSIKAGK 284 >UniRef50_C5NYK0 DNA polymerase III subunit gamma/tau n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK0_9BACL Length = 569 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 29/246 (11%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ + S ++ I ++ L +G G GKT++A I ANE+ Sbjct: 7 RKYRPQTFNDIVGQNHIVSVLKNAIDKDQIS----HAYLFYGSRGTGKTSIAKIFANEVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDI--- 137 N E + ++ +DE+ + + P Y++ I Sbjct: 63 GN---------EIYQKENVDIIEIDAASNNGVDEVRDIKEAI--KFLPTEGKYKVYIIDE 111 Query: 138 ---MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYI 192 + A ++ PP I ATT + + + R + + L Sbjct: 112 VHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFE-FKNLSQEQLIDR 170 Query: 193 VSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALD 252 + A+ L + + ++A A+G R A +L +V ++AE I+ + + Sbjct: 171 LKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYAE-----EITLNHILEVTS 225 Query: 253 MLNVDA 258 ++ D Sbjct: 226 SISEDD 231 >UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1K9_SLAHD Length = 807 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 92/258 (35%), Gaps = 26/258 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + R RP+ ++ VGQ V ++ ++ + L GP G GKTT+A ++ Sbjct: 2 AEALYRKYRPQTFDDVVGQTHVERTLKNALQ----QDHVSHAYLFCGPRGTGKTTMARLL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHR--LSPVVEE-----VLYP 128 A + T P + + ++ DV +D R + V EE P Sbjct: 58 AKALLCEHGPT--PSPDGTCEECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAP 115 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + A ++ PP + TT + + R Sbjct: 116 TRGRYKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQRFD- 174 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 ++ + + + +ARRA+G R A L ++ F G Sbjct: 175 FHRLSNEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAF----GAG 230 Query: 241 TISADIAAQALDMLNVDA 258 ++ D+A AL L+V+ Sbjct: 231 NVTMDVANAALGSLDVND 248 >UniRef50_A8F5Y2 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Y2_THELT Length = 465 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 30/270 (11%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + R RPK ++ + Q Q + + ++ A L+ + GP G GKT++A I+A Sbjct: 2 EALYRKYRPKNFDQIIDQLQAK----LVLQNALLKNKISHAYIFSGPRGTGKTSVARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAM- 130 + + R P E L + DV+ +D I + + + V + M Sbjct: 58 KALNCSNRKGYEPCCECESCL--SIDRGTHPDVIELDAASNRGIDEIRKIRDAVGFKPML 115 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 +++ I + E A ++ PP + ATT + + R +++ Sbjct: 116 SSHKIYIIDEFHMLTREAFNALLKTLEEPPEKVLFVLATTNLERVPQTIISRCQVIE-FR 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + + + + A F +E+ +D A +ARRA G R A L ++ ++A+ I Sbjct: 175 NFSEDAILENIRKVAHFESIELHEDAARMIARRASGGMRDALSYLEQIANYAD---GQVI 231 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAV 272 + + +AL ++ D + ++ + A+ Sbjct: 232 TPQVVEKALGLVP------DEIVQRYIKAI 255 >UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAH1_DESAH Length = 590 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 106/296 (35%), Gaps = 26/296 (8%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V RP+ +E VGQP V + ++ I L G +L+ GP G GKTT+A Sbjct: 1 MSYRVLALKYRPQTFDEVVGQPHVTTTLKNAI----LSGRVPHAILLTGPRGTGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A M T P +T DV ID + ++ + E V Y Sbjct: 57 ILAKAMNCETGPTPTPC--NICKTCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYM 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ I + A ++ PP I ATT + + R Sbjct: 115 PSSSKFKIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQRHD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + + A G +S + +A A G+ R + LL R+ + Sbjct: 175 -LGRISLAQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRILGSQAQTSE 233 Query: 240 GTISADIA--AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 T + L L + + + L A+I + L + +G + Sbjct: 234 QTSGPRAIDDDKILGTLGIIDKTLVF---DLADAIIQNRGADIIDLVDRIHTLGLD 286 >UniRef50_C9M8I9 DNA polymerase III gamma and tau subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8I9_9BACT Length = 648 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 25/244 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ + + + ++ L GP G GKTT+A ++A + Sbjct: 7 RRYRPQSFSDVVGQTVAVDVITRSLSSGRIG----HAYLFSGPRGCGKTTVARLLAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-------P 128 R + P + LA + + DV+ ID + + + V Sbjct: 63 CTARNGAEPCGQCQSCLA--IRDGRSLDVVEIDGASNNTVDEVRELKANVGLASFGGNWK 120 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 ++ ++ A ++ PP I ATT + + +R R + V Sbjct: 121 VYIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQHI-PFHGLSV 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 PD+ + GL + E+AR + G R LL +V G+++ Sbjct: 180 PDIVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIAL----GGGSVTKAA 235 Query: 247 AAQA 250 +Q Sbjct: 236 VSQL 239 >UniRef50_C4YKF6 Putative uncharacterized protein n=2 Tax=Candida albicans RepID=C4YKF6_CANAL Length = 552 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 59/270 (21%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 AIRP E+YVGQ + + ++ I+ ++ L ++ GP G+GKTTLA++++ E G+ Sbjct: 29 AIRPTTFEQYVGQDHLINPIDGAIRNF-IKLGYLPSMIFTGPSGIGKTTLASVISYECGL 87 Query: 82 NLRTTSGPVLE-------------KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYP 128 S + K E VLFIDE+HRL+ + ++ L P Sbjct: 88 PFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQDWLLP 147 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQV 186 +E+ ++ LIGATT + + R + +LE Sbjct: 148 YLENGEI--------------------VLIGATTIQPNTRIRQAILSRCQVF-KLEKLTR 186 Query: 187 PDLQYIVSRSARFMGLEMS---------------------DDGALEVARRARGTPRIANR 225 +++ ++ ++ F L+ D+ + RA+G RIA Sbjct: 187 KEIKKVLCQAITFQNLKRKHLYQLGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAIN 246 Query: 226 LLRRVRD-FAEVKHDGTISADIAAQALDML 254 L+ + D F + +D +S + + L Sbjct: 247 LIELISDNFLDNVNDIKLSKNQLQKIFHSL 276 >UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=Streptococcaceae RepID=Q1JL73_STRPC Length = 561 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 28/257 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R R + +E VGQ + + ++ +++ K+ L GP G GKT+ A I A M Sbjct: 7 RKYRSQTFDEMVGQSVISTTLKQAVESGKIS----HAYLFSGPRGTGKTSAAKIFAKAMN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 + P + D+ +TN DV+ ID + + + ++ Y P+ Y+ Sbjct: 63 CPNQVDGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYK 120 Query: 135 LDI------MIGEGPAARSIKIDLP--PFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ P I ATT + + + R VQR EF + Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSR---VQRFEFKAI 177 Query: 187 P--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ ++ GL D +ARRA G R A +L + + D ++ Sbjct: 178 KQKAIREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLSP---DNQVTI 234 Query: 245 DIAAQALDMLNVDAEGF 261 IA + +++ A G Sbjct: 235 AIAEEITGSISILALGD 251 >UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2P9_DESAS Length = 527 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 111/313 (35%), Gaps = 30/313 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP+L E +GQ + +E +K ++ L GP G GKT+ A I+ Sbjct: 3 YRALYREYRPQLFAEIMGQRHIVDTLENALKNNRI----AHAYLFCGPRGTGKTSTAKIL 58 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + + P + + + + DV+ ID I + + E V + P Sbjct: 59 AKALNCHQIKGVEPCNKCSSCV--SVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFAPT 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + E A ++ PP + ATT L + R Sbjct: 117 GGKYKVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFD-F 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + + + +++S + + A G R A +L ++ F + Sbjct: 176 KSIGAEPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITF---NNTAE 232 Query: 242 ISADIAAQALDMLN--VDAEGFDYMDRKL----LLAVIDKFFGGPVGLDNLAAAIGEERE 295 IS + L +N V +Y+ R L + + F G + R+ Sbjct: 233 ISEEDIHNLLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCVRD 292 Query: 296 TIEDVLEPYLIQQ 308 + +EP I+ Sbjct: 293 LLLQSIEPTAIKN 305 >UniRef50_A5DKE6 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DKE6_PICGU Length = 572 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 55/281 (19%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG-- 80 +RP L +Y+GQ + + I +R L +++ GPPG+GKTTLA+I+A E G Sbjct: 90 VRPSSLHQYIGQNHLTNHRNGAITNF-IRLGYLPSMILHGPPGVGKTTLASIIAKEAGYV 148 Query: 81 -VNLRTTSGPVLEKAGDLAAMLTNLEPHD---------VLFIDEIHRLSPVVEEVLYPAM 130 V L T V + +FIDEIHR S V ++ L P + Sbjct: 149 MVELSATDATVSTIRRLSNEIRDENRKRTKLGTPHLRVCVFIDEIHRFSKVQQDFLLPFV 208 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEFYQVPD 188 E+ F +GATT + L +R R + +L + Sbjct: 209 EEGL--------------------FVFLGATTFNPATRLRPAIRSRCQLF-KLNELTKDE 247 Query: 189 LQYIVSRSARFMGLE-----------MSDDGALEVARRARGTPRIANRLLRRVR------ 231 ++ ++ ++A + + S + + +G R A ++ V Sbjct: 248 VKSVLKKAALYENVRRRIVYGKQFLSFSSEVLNHIINTCKGDARSAVNMIEMVSINLSSD 307 Query: 232 --DFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLL 270 + ++++ L L+ G ++++ LL Sbjct: 308 AHKYTGTYDPIVVTSESVDTFLKELHRQNGGLNHVENNGLL 348 >UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE33_ACHLI Length = 564 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 25/233 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RPK ++ GQ + ++ + K+ + GP G GKT++A IVA + Sbjct: 8 RTYRPKFFKDVFGQKVIVQTLQNALLNEKIG----HAYIFSGPRGTGKTSVAKIVAKALN 63 Query: 81 VNLRTTSGPVLEKAG--DLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 P E G D+ + + D++ ID + + + ++V Y P++ Sbjct: 64 C----LEAPAKEPCGKCDVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYAPSIGK 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + + R + Sbjct: 120 YKVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFD-FKNI 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 ++ ++ + + L+++ + +AR A G R A LL +V F + Sbjct: 179 EMDQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFTNDE 231 >UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT Length = 564 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 30/260 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP++ + VGQPQV ++ +KA ++ L G G GKTT A I+ Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRI----AHAYLFTGSRGTGKTTCAKIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + P E + + N DV+ ID + + + EE + PA Sbjct: 61 AKAVNCLSLKEGDPCGECESCVG--IDNGSVMDVVEIDAASNNGVENIRNLREEASFTPA 118 Query: 130 MEDYQLDIMIGE------GPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I+ A ++ PP I ATT L + + R QR Sbjct: 119 AAKYRVYIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSR---CQRF 175 Query: 182 EFYQV--PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 +F+++ + + A + + AL +AR A G R A LL + + Sbjct: 176 DFHRIDPEVIADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSS---- 231 Query: 240 GTISADIAAQALDMLNVDAE 259 I+ ++ ++ + D Sbjct: 232 -EITLEVVSETAGLAGRDHL 250 >UniRef50_UPI0001C37DC8 DNA polymerase III subunits gamma and tau n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37DC8 Length = 539 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 99/275 (36%), Gaps = 40/275 (14%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP ++ + Q Q ++ I + G L G G GKTT A I+A + Sbjct: 7 RKWRPMTFDDVISQQQTTDTLKNQI----MSGKTAHAYLFTGSRGTGKTTCARILAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 P LE D+ + D++ ID + + + + +Y P Y+ Sbjct: 63 CRNMKDGNPCLEC--DICRDADSGALTDIVEIDAASNNGVDNIRDLRDAAVYTPDRGQYK 120 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I + A ++ PP I ATT + + + R QR +F ++ Sbjct: 121 IYIIDEVHMLSAGAFNALLKIMEEPPPYVKFILATTEIHKVPATILSR---CQRFDFRRI 177 Query: 187 --PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + A L ++D GA +A+ A G R A LL R I Sbjct: 178 KPEDIAARLKYIAEQEELTLTDGGAAMIAKLADGGMRDAVSLLDRCS-----VGGEEIDE 232 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 D+ + A + R L +++ G Sbjct: 233 DVVSAAAGIAG----------RDYLFGLLEAINTG 257 >UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Bacillales RepID=DPO3X_BACSU Length = 563 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 114/316 (36%), Gaps = 42/316 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ E+ VGQ + + + A L+ L GP G GKT+ A I A + Sbjct: 8 RVFRPQRFEDVVGQEHITKTL----QNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFI--------DEIHRLSPVVEEVLYPAMED 132 P E A +TN DV+ I DEI + V P+ Sbjct: 64 CEHAPVDEPCNECAA--CKGITNGSISDVIEIDAASNNGVDEIRDIRDKV--KFAPSAVT 119 Query: 133 YQLDIMIGE------GPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I+ A ++ PP I ATT + + R QR +F Sbjct: 120 YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISR---CQRFDFK 176 Query: 185 QVPDLQYIVSRSARF---MGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ Q IV R + L++ + +A A G R A LL + F+ Sbjct: 177 RITS-QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVE 235 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 A + A+ L + D+ + A+ L+ L + + IED++ Sbjct: 236 -DALLITGAVSQLYIGKLAKSLHDKNVSDAL--------ETLNELLQQGKDPAKLIEDMI 286 Query: 302 EPYLIQQGFLQRTPRG 317 + + L +T G Sbjct: 287 --FYFRDMLLYKTAPG 300 >UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAJ4_9FIRM Length = 593 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 110/320 (34%), Gaps = 43/320 (13%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 G + R RP +E GQ + ++ ++ K+ L GP G GKT+ Sbjct: 4 GCNMGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKI----AHAYLFCGPRGTGKTS 59 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV 125 +A I A + + P L+ D + N D++ ID + + ++E+V Sbjct: 60 IAKIFAKVINCESKE-HKPCLQC--DNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKV 116 Query: 126 LY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 Y P Y++ I M A I+ PP I ATT + + R Sbjct: 117 KYAPLKGKYKVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQ 176 Query: 177 IVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 ++ + +E DD +A+ A G R A +L + +A Sbjct: 177 RFD-FTKVPKNEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYAT- 234 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL-----DNLAAAIG 291 I + + V + + F PV L L + Sbjct: 235 ---NHIELQHINEIYGITTVQEK---------MKLFHHIFNNEPVDLMDMLDGMLEKGLD 282 Query: 292 EERETIEDVLEPYLIQQGFL 311 R T+ D++E L+++ + Sbjct: 283 IPRLTV-DLIE--LLKESII 299 >UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGG2_9ACTN Length = 862 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 26/254 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + R RP+ ++ VGQ + ++ +++ ++ L GP G GKTT+A ++A Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVS----HAYLFCGPRGTGKTTMARLLA 58 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHR--LSPVVEE-----VLYPA 129 + T P E LA + DV +D R + V EE P Sbjct: 59 KALLCEKGPTPAPDGECEQCLA--IAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPV 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I TT + + + R Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFD-F 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ + G+E + A+RA+G R A L ++ F +G Sbjct: 176 HRLANEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAF----GEGR 231 Query: 242 ISADIAAQALDMLN 255 ++ +A L L+ Sbjct: 232 VTMQVALDVLGALD 245 >UniRef50_A7ZAZ1 ATPase, AAA family protein n=45 Tax=Epsilonproteobacteria RepID=A7ZAZ1_CAMC1 Length = 394 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 101/262 (38%), Gaps = 37/262 (14%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 RPK L+E GQ V++ FI +K+ H + +GP G GKT+ A VA+ + Sbjct: 8 FRPKNLDEICGQKAVKTAFLKFIATSKI-----PHSIFYGPAGCGKTSFARAVASGANYD 62 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMI 139 G L K D +L N E + FIDEIHRLS +E L ME+Y+ Sbjct: 63 FYEFDGGNL-KIDDFRKILKNYENALNKPLFFIDEIHRLSKTQQEALLIPMENYKA---- 117 Query: 140 GEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSA 197 +IGA+T +L+S +R R + + D + ++++ Sbjct: 118 ----------------LVIGASTENPFFTLSSGIRSRSMLFE-FRPLSSSDFEELLAKIK 160 Query: 198 RFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVD 257 + + +D + + + G R LL V D +S + + Sbjct: 161 EQISFSIDEDAKEYLFKSSGGDARAMLNLLE-----FAVTLDENVSIENLKTLRQNALKE 215 Query: 258 AEGFDYMDRKLLLAVIDKFFGG 279 D +L A I G Sbjct: 216 GAKEDDTHYELASAFIKSLRGS 237 >UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PSN6_CHIPD Length = 634 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 26/257 (10%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ VGQ + + ++ I+ ++L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPQNFSTVVGQSHITTTLKNAIRNSQL----AHAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAA-------MLTNLEPHDVLFIDEIH------RLSPVVEE 124 + G + + + L+ +D+I R +P + Sbjct: 62 TINCENLQPDGEACNQCHSCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAP--QA 119 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y ++ ++ A ++ PP I ATT + + R I + Sbjct: 120 GKYKIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD-FK 178 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + D + ++ D VA++ G R + L ++ F G + Sbjct: 179 RITIQDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFT----GGHL 234 Query: 243 SADIAAQALDMLNVDAE 259 + + L++L+ D Sbjct: 235 TYQNTLEHLNILDYDYF 251 >UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PXF7_9SPHI Length = 596 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 95/256 (37%), Gaps = 24/256 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + ++ I +L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPVTFDSVVGQQHITGTLKNAIHNNQLAQ----AFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAME- 131 + TS D N + +D + + ++++V P Sbjct: 62 TINCE-HITSEVEACGVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + + A ++ PP I ATT + + R I Sbjct: 121 KYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 +V D+ ++ A + DG +A++A G R A + ++ F+ + IS Sbjct: 180 IRVEDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS----NKQIS 235 Query: 244 ADIAAQALDMLNVDAE 259 L++L+ D Sbjct: 236 YQSVIDNLNILDYDYY 251 >UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD9 Length = 600 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 107/318 (33%), Gaps = 43/318 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ ++ GQ + + ++ I K+ L GP G GKTT+A ++A + Sbjct: 10 RTYRPQTFKDVAGQEAIITTLKHAIDEKKI----AHAYLFCGPRGTGKTTVAKLLAKAVN 65 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMEDYQ 134 T P + + N DV+ ID + + ++++V Y P Y+ Sbjct: 66 C----TGNPKPCGECENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYAPTQGQYK 121 Query: 135 LDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 + I M A ++ PP I ATT + + R Sbjct: 122 VYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFD-FTRLTD 180 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD------- 239 ++ + + G D +AR A G R A +L + + + Sbjct: 181 QEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAYNDDHLSINDIHTI 240 Query: 240 -GTISADIAAQALDMLN----------VDAEGFDYMDRKLLLAVIDKFFGGPVGLDN--L 286 G +S D L +L +D +D K L + V N Sbjct: 241 YGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDILKDIVVYRNTKD 300 Query: 287 AAAIGEERETIEDVLEPY 304 A+ + + + + PY Sbjct: 301 ASIMSVMTQKDLENIVPY 318 >UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 Tax=Dehalococcoides RepID=A5FRM9_DEHSB Length = 570 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 120/314 (38%), Gaps = 40/314 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ L + VGQ V ++ + + ++ L GP G GKT+ I+A Sbjct: 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQ----AYLFCGPRGTGKTSTGRILAK 63 Query: 78 EMGVNLRTTSG-PVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + G P L +T D++ ID + + + E+V Y P++ Sbjct: 64 AVNCTTNQGKGEPCNTCPMCL--SITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSL 121 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 +Y++ I + A ++ PP I ATT + + R QR + Sbjct: 122 ANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSR---CQRFD 178 Query: 183 FYQVP--DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 F++V D+ + + + G+ + + +AR A G+ R LL+++ + Sbjct: 179 FHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIA----TTYGA 234 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 IS AL + D + L ++ K GL L A + + + + Sbjct: 235 EISLSQVQAALGISG------DERIKALAENILKK--DIKNGLKTLNAVLADGLDLKQFR 286 Query: 301 LE--PYLIQQGFLQ 312 E YL Q + Sbjct: 287 RELLDYLRQIMLVN 300 >UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQ74_ACIBL Length = 632 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 123/331 (37%), Gaps = 47/331 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E +GQ V ++ I+ ++ + G G+GKTT+A Sbjct: 1 MSYQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRI----AHGYIFSGHRGIGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAG--DLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 I+A + + PV E G D + + DV+ ID I + + E Sbjct: 57 ILAMALNCQ--SADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAAR 114 Query: 127 Y-PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 Y PA + +++ I+ A ++ PP + ATT + +R R Sbjct: 115 YRPARDRFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQH 174 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA--E 235 + D+ + A G+ DD +A G+ R A ++ + + Sbjct: 175 FS-FHAVKFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQ 233 Query: 236 VKHD------GTISADIAAQALD----------MLNVDAEGFD-----YMDRKLLLAVID 274 +K D GT+S+D+ ++ + +D + + ++ + + + Sbjct: 234 LKTDDVRGLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRN 293 Query: 275 KFFGGPVGLDN-LAAAIGEERETIEDVLEPY 304 G D+ L +ERE + V E + Sbjct: 294 AMVAKVAGKDSALLQISSDERERVARVAEQF 324 >UniRef50_C2TXN4 DNA polymerase III, gamma and tau subunits n=4 Tax=Bacillus cereus RepID=C2TXN4_BACCE Length = 541 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 40/305 (13%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 RA RP + VGQ +++ + IK K+ L+ GP G GKTT+A I+ + Sbjct: 14 RAYRPNSFNDLVGQDHIKTTIMNAIKLEKV----AHAYLLSGPRGTGKTTVAKIIGKGVN 69 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID--------EIHRLSPVVEEVLYPAMED 132 ++G +K + + N + D+L D EI ++ + L P Sbjct: 70 CLAPLSNGEPCQKCANCGD-INNNKFADILEFDAASNNGVEEIRQIRD--QVHLAPVTGK 126 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + R Q+ EF Sbjct: 127 YKVYIIDEVHMLSNSAFNALLKTLEEPPAHVIFILATTDPQKVPKTIISR---CQQFEFR 183 Query: 185 QVPDLQYIVSR---SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA----EVK 237 +P LQ ++ R + G+ ++D+ +++ A G R A ++ +V +A ++ Sbjct: 184 NIP-LQAMIERLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNNVTIE 242 Query: 238 HDGTISADIAAQALDMLNVD------AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG 291 T+ +A Q ++ L D + L D F +G Sbjct: 243 DVATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFLSDLIGYYRDLMIFN 302 Query: 292 EERET 296 ++T Sbjct: 303 LSQKT 307 >UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Bacteroidales RepID=A6LDQ5_PARD8 Length = 586 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 36/289 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP VGQ + + ++ I++ KL L GP G+GKT+ A I A Sbjct: 6 VSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKL----AHAYLFCGPRGVGKTSCARIFAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVV-EEVLYPAME 131 + T G A + +++ +D + + ++ + + P + Sbjct: 62 TINCLNPTADGEACN-ACESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPPIG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I Sbjct: 121 KYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYD-FSR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + D+ + + G+ + +A++A G R A + +V F +G I+ Sbjct: 180 ISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT----NGNIT 235 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 L++L D + + D G V L + E Sbjct: 236 YQAVIDNLNVL----------DYEYYFRLTDAILSGNVRASLL--ILNE 272 >UniRef50_D1Y4Y4 DNA polymerase III subunit tau n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y4_9BACT Length = 640 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 25/246 (10%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 R RP+ + VGQ + I++ + L GP G GKTT+A + A + Sbjct: 7 RRYRPQKFSDVVGQSAAIGVITRAIESGAIG----HAYLFSGPRGCGKTTVARLFAKAVN 62 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVL-------YP 128 +T + P E + + DV+ ID + + + E V Y Sbjct: 63 CPSKTGAEPCNEC--ETCRAIREGSCLDVIEIDGASNNSVDEIRNLKEHVALASFTCPYK 120 Query: 129 AMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 ++ ++ A ++ PP + ATT + +R R + + Sbjct: 121 VYIIDEVHMLSISAFNALLKTLEEPPERVIFVLATTAPHKVPVTIRSRCQHI-PFHGMTL 179 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 + + + + ++ D+ E+AR + G R A L+ + G+++ + Sbjct: 180 EQIVNRLKQVSEAERIDARDEALWEIARNSEGGMRDALSLMEQAIAL----GAGSVTRET 235 Query: 247 AAQALD 252 + L Sbjct: 236 VDKLLG 241 >UniRef50_B2THM3 ATPase, AAA family n=25 Tax=Clostridiaceae RepID=B2THM3_CLOBB Length = 428 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 45/286 (15%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +AD +RP +E++VGQ + + ++ + + + +GPPG GKTTLANI+A Sbjct: 3 PLADL-MRPSKIEDFVGQRHILGENTPLYNL--IKSKKICNCIFYGPPGTGKTTLANIMA 59 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLE-----PHDVLFIDEIHRLSPVVEEVLYPAME 131 + + D+ + L+ VL+IDE+ + ++ L +E Sbjct: 60 KYVDKKFYKLNATTAS-VKDIQNITNELDNLLNYAGVVLYIDELQHFNKKQQQSLLEFIE 118 Query: 132 DYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVPDL 189 D ++ TLI +TT + + R I E + D+ Sbjct: 119 DGRI--------------------TLIASTTENPYFVIHKAIISRCNIFA-FEPLIISDI 157 Query: 190 QYIVSRSARFM---GLEM--SDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + +S + G+E+ S++ +A ++G R A +L + H IS Sbjct: 158 IVGLEKSLDKLINEGIEVTYSNEALKYIAEISQGDYRKAYNILELSINSQMTLH-KEISV 216 Query: 245 DIAAQALDM-LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 D + + D G ++ + ++ G D+ AA Sbjct: 217 DYIEKLGQSNMRADNSGDEFYN------LLSALQKSIRGSDSDAAI 256 >UniRef50_A4CK17 DNA polymerase III subunit gamma/tau n=6 Tax=Bacteria RepID=A4CK17_9FLAO Length = 631 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 97/268 (36%), Gaps = 50/268 (18%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ E+ VGQ + + I+ L LL GP G+GKTT A I+A Sbjct: 17 VSARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQ----ALLFCGPRGVGKTTCARILAK 72 Query: 78 EMG------------VNLRTTSGPVLEKAGDLAAMLTNL------EPHDVLFIDEIHRLS 119 ++ N+ D+ ++ + + V IDE+H LS Sbjct: 73 KINEDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIIDEVHMLS 132 Query: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 A ++ PP I ATT + + R I Sbjct: 133 QA--------------------AFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQI 172 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 V D + A G+E ++ +A++A G R A + RV FA Sbjct: 173 FD-FRRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFA--- 228 Query: 238 HDGTISADIAAQALDMLNVDAEGFDYMD 265 ++ A+ L++L+VD F+ D Sbjct: 229 -GNKLTRKAVAENLNVLDVDVY-FESTD 254 >UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKH0_FIBSS Length = 575 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 25/251 (9%) Query: 20 DRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEM 79 R RP+ + VGQ + +E I+ +L L G G+GKTT A I+A + Sbjct: 7 ARKWRPQSFSDMVGQEHIAKTLENAIQGGRLH----HAFLFTGTRGVGKTTSARILARTL 62 Query: 80 GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAM-EDY 133 P E D + P DV ID + + V+E V YP + Y Sbjct: 63 NCKGSDPLHPCGEC--DSCKDIAGGNPMDVYEIDAASNTSVDNIRDVIERVQYPPVIGKY 120 Query: 134 QLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFYQ 185 ++ I + A ++ PP I ATT + + R + Sbjct: 121 KIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQRFD-FKRLT 179 Query: 186 VPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISAD 245 V ++ + G++ +D+ A +A G+ R + F ++A+ Sbjct: 180 VDQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFT----GNEMTAE 235 Query: 246 IAAQALDMLNV 256 L + V Sbjct: 236 SVRSVLGIPPV 246 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruv... 361 2e-98 UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mits... 357 2e-97 UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruv... 357 3e-97 UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruv... 351 2e-95 UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruv... 351 3e-95 UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruv... 345 1e-93 UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruv... 344 2e-93 UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruv... 344 4e-93 UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruv... 339 6e-92 UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruv... 337 3e-91 UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruv... 336 7e-91 UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruv... 334 3e-90 UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonq... 332 1e-89 UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruv... 327 3e-88 UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruv... 327 3e-88 UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 326 6e-88 UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dict... 324 2e-87 UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruv... 323 7e-87 UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruv... 322 1e-86 UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruv... 322 1e-86 UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Plan... 317 5e-85 UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruv... 316 6e-85 UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 T... 315 1e-84 UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 ... 315 2e-84 UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Ba... 314 3e-84 UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacte... 314 3e-84 UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 311 2e-83 UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymera... 310 3e-83 UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Ta... 310 3e-83 UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 T... 310 3e-83 UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibriona... 310 5e-83 UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 T... 310 5e-83 UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cell... 310 6e-83 UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, puta... 309 8e-83 UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 T... 309 1e-82 UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enter... 309 1e-82 UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 T... 309 1e-82 UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=L... 309 1e-82 UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 T... 309 1e-82 UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseria... 308 2e-82 UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=ce... 308 2e-82 UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 T... 307 3e-82 UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 ... 307 4e-82 UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionac... 307 4e-82 UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fi... 307 4e-82 UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 305 1e-81 UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase... 305 1e-81 UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 T... 305 1e-81 UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Ta... 305 1e-81 UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Ta... 305 2e-81 UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Ta... 305 2e-81 UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Ta... 304 3e-81 UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pas... 304 3e-81 UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicr... 304 3e-81 UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Ta... 304 3e-81 UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruv... 304 3e-81 UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 T... 304 4e-81 UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 T... 304 4e-81 UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 T... 304 4e-81 UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79... 303 5e-81 UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 303 5e-81 UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymera... 303 6e-81 UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 ... 303 6e-81 UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pa... 302 9e-81 UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 T... 302 1e-80 UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 T... 302 1e-80 UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 T... 302 1e-80 UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau sub... 302 1e-80 UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdema... 302 1e-80 UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=C... 302 1e-80 UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacill... 302 2e-80 UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Ta... 301 2e-80 UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 T... 301 2e-80 UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruv... 301 2e-80 UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus Rep... 301 2e-80 UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymera... 301 2e-80 UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Ta... 301 2e-80 UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Ha... 301 2e-80 UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderi... 301 3e-80 UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 T... 301 3e-80 UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 T... 301 3e-80 UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 T... 300 3e-80 UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruv... 300 4e-80 UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bactero... 300 4e-80 UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 T... 300 4e-80 UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobac... 300 5e-80 UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 T... 300 6e-80 UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subuni... 299 7e-80 UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=unc... 299 7e-80 UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 T... 299 7e-80 UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase... 299 9e-80 UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA ... 299 1e-79 UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Ta... 299 1e-79 UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 T... 298 1e-79 UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W... 298 2e-79 UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Ba... 298 2e-79 UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 T... 297 3e-79 UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Ba... 297 3e-79 UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=roo... 297 3e-79 UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and ta... 297 3e-79 UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Ta... 297 5e-79 UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 T... 297 5e-79 UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 T... 297 6e-79 UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Myco... 296 6e-79 UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Ba... 296 7e-79 UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 ... 296 8e-79 UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase... 296 9e-79 UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 T... 296 9e-79 UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clo... 295 1e-78 UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruv... 295 1e-78 UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 T... 295 1e-78 UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Ta... 295 1e-78 UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonel... 295 1e-78 UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dic... 295 2e-78 UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella a... 294 2e-78 UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, puta... 294 3e-78 UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bac... 293 4e-78 UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax... 293 5e-78 UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=D... 293 5e-78 UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 T... 293 6e-78 UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Ta... 293 7e-78 UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 T... 293 8e-78 UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lys... 292 9e-78 UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau... 292 1e-77 UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Ta... 292 1e-77 UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 T... 292 1e-77 UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Co... 292 1e-77 UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxaloba... 292 2e-77 UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 T... 291 2e-77 UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 T... 291 2e-77 UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 T... 291 2e-77 UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococca... 291 2e-77 UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 T... 291 2e-77 UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenel... 291 2e-77 UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 T... 291 2e-77 UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruv... 291 3e-77 UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n... 291 3e-77 UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=St... 290 3e-77 UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Mic... 290 4e-77 UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 T... 290 4e-77 UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 T... 290 4e-77 UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Ta... 290 5e-77 UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Myco... 290 5e-77 UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clo... 290 5e-77 UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 T... 290 7e-77 UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 T... 290 7e-77 UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 289 7e-77 UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Ba... 289 8e-77 UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA ... 289 8e-77 UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteri... 289 9e-77 UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 T... 289 1e-76 UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Ta... 289 1e-76 UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 T... 289 1e-76 UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 T... 288 1e-76 UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacte... 288 1e-76 UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Sl... 288 1e-76 UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax... 288 1e-76 UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=P... 288 2e-76 UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 T... 288 2e-76 UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax... 288 2e-76 UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 T... 288 2e-76 UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydroba... 288 2e-76 UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter s... 287 3e-76 UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 T... 287 4e-76 UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Pl... 287 4e-76 UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 T... 287 4e-76 UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits ... 287 4e-76 UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 T... 287 4e-76 UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 T... 287 4e-76 UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau ... 287 5e-76 UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetell... 287 5e-76 UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcu... 286 7e-76 UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase... 286 7e-76 UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Ta... 286 7e-76 UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotro... 285 1e-75 UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 T... 285 1e-75 UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2... 285 1e-75 UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 T... 285 2e-75 UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostri... 285 2e-75 UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, puta... 285 2e-75 UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 T... 285 2e-75 UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Ta... 285 2e-75 UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragm... 285 2e-75 UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 T... 285 2e-75 UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 T... 284 2e-75 UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 T... 284 3e-75 UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 T... 284 3e-75 UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 T... 284 3e-75 UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 T... 284 3e-75 UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 T... 284 3e-75 UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 T... 284 4e-75 UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 284 4e-75 UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 T... 283 4e-75 UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 283 4e-75 UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Ta... 283 5e-75 UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 T... 283 6e-75 UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau... 283 6e-75 UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 T... 283 6e-75 UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1... 283 6e-75 UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 T... 283 7e-75 UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=De... 283 7e-75 UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 T... 283 7e-75 UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 T... 283 7e-75 UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits... 283 7e-75 UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella... 282 1e-74 UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 T... 282 1e-74 UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Me... 282 1e-74 UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n... 282 1e-74 UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 T... 282 1e-74 UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 282 2e-74 UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 T... 281 2e-74 UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Copr... 281 2e-74 UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 T... 281 2e-74 UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostri... 281 3e-74 UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 T... 281 3e-74 UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium Rep... 280 3e-74 UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Ta... 280 4e-74 UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 T... 280 4e-74 UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 T... 280 4e-74 UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propion... 280 4e-74 UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunit... 280 5e-74 UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 T... 280 6e-74 UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 280 6e-74 UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 T... 279 8e-74 UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 T... 279 9e-74 UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 ... 279 9e-74 UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Ta... 279 1e-73 UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 ... 279 1e-73 UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=be... 279 1e-73 UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunit... 279 1e-73 UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 T... 279 1e-73 UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Cam... 279 1e-73 UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicob... 278 2e-73 UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacte... 278 2e-73 Sequences not found previously or not previously below threshold: UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 T... 307 4e-82 UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 T... 304 2e-81 UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma ... 303 6e-81 UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 T... 301 2e-80 UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 ... 296 7e-79 UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Ta... 290 4e-77 UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 T... 290 4e-77 UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=I... 290 6e-77 UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymera... 290 6e-77 UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 T... 289 7e-77 UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Ta... 288 2e-76 UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 T... 285 2e-75 UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymera... 285 2e-75 UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 T... 281 3e-74 UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, puta... 280 4e-74 UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Ta... 279 8e-74 >UniRef50_A9BUG8 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Bacteria RepID=RUVB_DELAS Length = 361 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 231/329 (70%), Positives = 278/329 (84%), Gaps = 1/329 (0%) Query: 6 RLISAGT-TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 R+ISA + E+ +RA+RPKLL+EYVGQ + R Q+EIFI AA+ R +ALDH+L+FGPP Sbjct: 28 RMISAAPVSRGEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPP 87 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTL++I+A E+GVNLR TSGPVLEK DLAA+LTNLE +DVLFIDEIHRLSPVVEE Sbjct: 88 GLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEE 147 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPA+EDYQ+DIMIGEGPAARSIK+DL PFTL+GATTRAG LT+PLRDRFGIV RLEFY Sbjct: 148 ILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFY 207 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +L IV RSA + + D+GA E+ARR+RGTPRIANRLLRRVRD+A+V+ DG+I+ Sbjct: 208 TAEELARIVRRSAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITR 267 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 ++A +AL ML+VD +GFD MDRKLL AV+ +F GGPVGLDN+AA+IGEE TIEDV+EPY Sbjct: 268 ELADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPY 327 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPP 333 LIQQGFLQRTPRGRMAT A+ H G+ P Sbjct: 328 LIQQGFLQRTPRGRMATQAAYRHLGLPVP 356 >UniRef50_C9KK53 Holliday junction DNA helicase RuvB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK53_9FIRM Length = 339 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 196/313 (62%), Positives = 254/313 (81%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ L EY+GQ +V++ + IFI+AA RG+ALDH+L++GPPGLGKTTLA I+ANE+GVN Sbjct: 27 LRPRKLNEYIGQEKVKANLSIFIQAALSRGEALDHVLLYGPPGLGKTTLAGIIANELGVN 86 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 R TSGP +E++GDLAA+LTNL+ HDVLFIDEIHRLS VEEVLY AMED+ LDI+IG+G Sbjct: 87 FRQTSGPAIERSGDLAALLTNLQEHDVLFIDEIHRLSHSVEEVLYSAMEDFALDIIIGKG 146 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 P+ARSI++D+ PFTLIGATT+AG+L +PLRDRFG++ RLE+Y L +I+ R+A + + Sbjct: 147 PSARSIRLDIAPFTLIGATTKAGALAAPLRDRFGVISRLEYYTPDALVHIIKRAAEILDI 206 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 + D+GALE+ARR+RGTPR+ANRLL+RVRD A+++ GTI+ +IA +AL ML VD G D Sbjct: 207 AIEDEGALEIARRSRGTPRVANRLLKRVRDVAQIEGSGTITNEIADKALRMLEVDKAGLD 266 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + DR++L +I+KF GGPVGLD LAAAI E R+TIEDV EPYLIQ GF+ RTPRGR+ T Sbjct: 267 HTDRRMLRTMIEKFAGGPVGLDTLAAAISEARDTIEDVYEPYLIQLGFINRTPRGRIVTE 326 Query: 323 RAWNHFGITPPEM 335 + H GI PE Sbjct: 327 AGYRHLGIPYPEK 339 >UniRef50_Q1IHV6 Holliday junction ATP-dependent DNA helicase ruvB n=275 Tax=cellular organisms RepID=RUVB_ACIBL Length = 360 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 185/334 (55%), Positives = 253/334 (75%) Query: 2 IEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIF 61 + +RL+SA + + +RP+ L E++GQP+V+ + + I+AA+ RG+ALDH+L++ Sbjct: 22 DQRERLVSAIPVEDDSSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLY 81 Query: 62 GPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPV 121 GPPGLGKTTLANI+ANEM + TSGP L+ GDL A+LTN+ VLFIDE+HRL P Sbjct: 82 GPPGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPA 141 Query: 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRL 181 +EE+LY A+EDY+LDI+IG+GP+AR+ ID+ PFTL+ ATTRAG L++PLR RFGIV RL Sbjct: 142 LEELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRFGIVLRL 201 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 EFY DL+ I+ RSA + +E+ + GA E+A R RGTPRIANRLLRRVRD+A+V+ G Sbjct: 202 EFYTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRGAGK 261 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 I + A +AL+ML VD GFD +DR+L+L +I+K+ GGPVGL+ LAA++ EE + IE++ Sbjct: 262 IDRETAQKALEMLEVDQHGFDEVDRRLMLTIIEKYQGGPVGLNTLAASLAEETDAIEEIY 321 Query: 302 EPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEM 335 EP+LIQ GFL RTPRGR+AT A+ +F + PP+ Sbjct: 322 EPFLIQLGFLDRTPRGRVATHLAYEYFKMKPPKK 355 >UniRef50_A8GRW7 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Proteobacteria RepID=RUVB_RICRS Length = 342 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 174/325 (53%), Positives = 239/325 (73%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 E+ + IRP L+E+VGQ Q++ + +FIKAAK R + LDH L +GPPGLGKTT Sbjct: 6 SPEKSENDQELPIRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTT 65 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 LA I++NE+G N ++TSGP + K DLAA+LTNLE +DVLFIDEIHRL+ VEEVLYPAM Sbjct: 66 LAKIISNEIGGNFKSTSGPAILKVADLAAILTNLEKNDVLFIDEIHRLNTAVEEVLYPAM 125 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 ED++LDI+IGEG AARS+KI LP FTLIGATTR G L++PLRDRFGI RL FY +L+ Sbjct: 126 EDFELDIIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELK 185 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 +++R+++ + ++++D G+ E+A+R+RGTPRIA RLLRR+RDFA V+ + +++ Sbjct: 186 KVLNRASKLLDIDLTDSGSEEIAKRSRGTPRIALRLLRRIRDFAAVEGKSRVDKEVSDFG 245 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 L+ L VD G D D + L + D + GGPVG++ +AAA+ E+R+ +E+ +EPYLIQ G Sbjct: 246 LNRLEVDRIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYLIQIGL 305 Query: 311 LQRTPRGRMATTRAWNHFGITPPEM 335 LQRTPRGR+ T A+ H ++ P Sbjct: 306 LQRTPRGRVITIAAFEHLKMSVPNQ 330 >UniRef50_B0TF70 Holliday junction ATP-dependent DNA helicase ruvB n=1359 Tax=root RepID=RUVB_HELMI Length = 370 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 191/330 (57%), Positives = 258/330 (78%) Query: 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 +R++++ + + ++RP+ L EY+GQ +++ + +FI+AA R + LDH+L++GPP Sbjct: 3 ERMMTSAKRPEDRETEWSLRPRTLREYIGQDKLKENLTVFIQAALGRREPLDHVLLYGPP 62 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTTLA I+A E+GV LR TSGP +E+ GDLAA+LTNL+P DVLFIDEIHRL+ VEE Sbjct: 63 GLGKTTLAQIIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFIDEIHRLNRAVEE 122 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 VLYPAMED+ LDI+IG+GPAARSI+IDLP FTL+GATTRAG LTSPLRDRFG++ RLE+Y Sbjct: 123 VLYPAMEDFCLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSPLRDRFGVIHRLEYY 182 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 + +L++I+ R+A +G+ +GA E+A R+RGTPRIANRLL+RVRD+A+V DG ++ Sbjct: 183 RPDELEFIILRAATILGVTAEPEGAREIALRSRGTPRIANRLLKRVRDYAQVLSDGVVTG 242 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 ++A +AL L VD G D D++LL A+I KF GGPVG++ LAA++GE +T+EDV+EPY Sbjct: 243 EVAREALRRLEVDPRGLDTTDQRLLEALIRKFAGGPVGVETLAASVGESVDTVEDVVEPY 302 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 L+Q GFL RTPRGRMAT A H G+ P Sbjct: 303 LMQLGFLNRTPRGRMATIAACAHLGVPVPA 332 >UniRef50_C0R250 Holliday junction ATP-dependent DNA helicase ruvB n=5 Tax=Bacteria RepID=RUVB_BRAHW Length = 346 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 168/325 (51%), Positives = 237/325 (72%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 I+ D + IRP+ ++++GQ ++S++++FI +AK R +LDH+L +GPPGLG Sbjct: 6 ITNAEENSYDKPNNNIRPQGFDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYGPPGLG 65 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTTLA I+ANEMG N++ TS P++E+ GDLA++LT L D+LFIDEIHRL VVEEVLY Sbjct: 66 KTTLAQIIANEMGSNIKATSAPIIERPGDLASILTTLGEKDILFIDEIHRLRTVVEEVLY 125 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 AMED+ +DI +GEG +A+S ++ LP FTLIGATTR+G L++PL DRFGIV+RLEFY Sbjct: 126 SAMEDFFVDIKVGEGTSAKSFRVKLPHFTLIGATTRSGLLSTPLYDRFGIVERLEFYTNE 185 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 DL IV RS+ F+ + ++D+ A+ +A R+RGTPRI NRLLRRV DFA V I A Sbjct: 186 DLANIVKRSSEFLNINITDEAAISIASRSRGTPRIVNRLLRRVFDFATVHDVLKIDEKFA 245 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQ 307 +L+ L +D GF+ +D+ L +I + GGPVG+D L+ ++ E+ ETIEDV+EPYLIQ Sbjct: 246 CDSLEKLGIDKNGFEALDKLYLNTIIKHYNGGPVGVDTLSVSLSEQIETIEDVIEPYLIQ 305 Query: 308 QGFLQRTPRGRMATTRAWNHFGITP 332 GF++RTP+GR+AT +A+ + ++ Sbjct: 306 CGFIKRTPKGRVATNKAYGYLNLSS 330 >UniRef50_A8F5R0 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Thermotoga lettingae TMO RepID=RUVB_THELT Length = 343 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 165/310 (53%), Positives = 233/310 (75%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP LE+Y+GQ +V+ ++ I +KAAKLR + LDH+L GPPGLGKTTLA ++A EMG N Sbjct: 17 LRPDTLEDYIGQEEVKKKLYIAMKAAKLRNEPLDHILFSGPPGLGKTTLAFVIAKEMGKN 76 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + TSGPVLE+ GD+AA+L+++E D+LFIDEIHR++ VEEV Y A+EDY++DIMIG+G Sbjct: 77 IHITSGPVLERQGDIAAILSSIEEGDILFIDEIHRINKAVEEVFYSALEDYKVDIMIGKG 136 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 P ARSI+I L PFTL+GATTR+G L+SPLR+RFG++ L+FY V +L I+ R+ + M + Sbjct: 137 PTARSIRIGLKPFTLVGATTRSGLLSSPLRNRFGMILELQFYTVKELMEIIKRACKIMNI 196 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E+ + A +A RARGTPRIA RLL+RVRD A ++ + I + + + +D+L +D G D Sbjct: 197 EIEESAAQLIASRARGTPRIALRLLKRVRDVATIRKENKIISHLVEKTMDILEIDKLGLD 256 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 MDRK+L +I+ + GGPVG++ LAA + E +T++++ EPYL+QQG + RTPRGR+AT Sbjct: 257 EMDRKILRTLIEIYDGGPVGIEALAATLNLEIDTLKEIHEPYLLQQGLIIRTPRGRVATG 316 Query: 323 RAWNHFGITP 332 A+ H G Sbjct: 317 IAYEHLGYPS 326 >UniRef50_Q8DGR1 Holliday junction ATP-dependent DNA helicase ruvB n=42 Tax=Bacteria RepID=RUVB_THEEB Length = 363 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 184/330 (55%), Positives = 246/330 (74%), Gaps = 2/330 (0%) Query: 7 LISAGTTLPED--VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 ++S T E +A+ ++RP L++Y+GQ +++ + I I+AAK R + LDHLL++GPP Sbjct: 20 VLSNQPTPEEQHSLAEDSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPP 79 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124 GLGKTT+A I+A EMGVN + TS P LE+ D+ +L NL+ D+LFIDEIHRLS + EE Sbjct: 80 GLGKTTIALILAAEMGVNCKVTSAPALERPRDIVGLLVNLQAGDILFIDEIHRLSRMTEE 139 Query: 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +LYPAMED+ LD+ +G+ AR ++ L FTL+GATTRAG+LTSPLRDRFG+VQRL FY Sbjct: 140 LLYPAMEDFYLDLTVGKQQTARPRRLKLNRFTLVGATTRAGALTSPLRDRFGLVQRLRFY 199 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 +LQ IV R A + ++ + ALE+ RR+RGTPRIA RLL+RVRD+A VKHDG I+ Sbjct: 200 HPEELQQIVQRGAALLQTPITPEAALEIGRRSRGTPRIALRLLKRVRDYAAVKHDGRITL 259 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 D+A AL++L+VD G D DR+LL +I+ + GGPVG++ LAAA GE+ +TIE+V EPY Sbjct: 260 DVARAALELLHVDPAGLDGSDRRLLRVMIESYQGGPVGIETLAAATGEDVQTIEEVYEPY 319 Query: 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 L+Q G+LQRTPRGR+AT RAW H G T PE Sbjct: 320 LLQMGYLQRTPRGRVATPRAWQHLGYTAPE 349 >UniRef50_A7HJD6 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_FERNB Length = 347 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 172/308 (55%), Positives = 238/308 (77%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L EY+GQ ++ ++++ I+A+K+RG+ LDH+L+ GPPGLGKTTLA I+ANE+ N Sbjct: 25 LRPKFLSEYIGQENIKERLKLAIQASKMRGEQLDHILLAGPPGLGKTTLATIIANELNAN 84 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + TSGP+LEK GDLAA+LTNLE DVLFIDEIHR++ VEE+LY AMED+Q+DIMIG+G Sbjct: 85 IHVTSGPILEKQGDLAAILTNLEAGDVLFIDEIHRMNRNVEEILYSAMEDFQVDIMIGKG 144 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 PAARSI+++L PFTLIGATTR+G LTSPLR+RFG++ + FY +L+ I++R+A MG Sbjct: 145 PAARSIRVELQPFTLIGATTRSGLLTSPLRNRFGMIFEMNFYTQEELKMIITRAAEVMGT 204 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 + DD AL +A+R+RGTPRIA RLL+RVRD + V+ I+ +I + + +L VD G D Sbjct: 205 LIDDDAALSIAKRSRGTPRIAIRLLKRVRDLSTVRGSENITLNIVEEVMRLLGVDEFGLD 264 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 MDRK+L +I+ + GGPVGL +LAA++G +TI +V EP+L+Q GF+ R RGR+AT Sbjct: 265 EMDRKILKTIIEIYKGGPVGLKSLAASLGITEDTISEVYEPFLVQSGFIARGARGRIATE 324 Query: 323 RAWNHFGI 330 +A+ + G Sbjct: 325 KAYKYLGY 332 >UniRef50_C0QKP4 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Bacteria RepID=RUVB_DESAH Length = 354 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 161/327 (49%), Positives = 221/327 (67%) Query: 4 ADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGP 63 + + + + + ++RP E YVGQ ++I I+AAK+RGD LDH+L+ GP Sbjct: 21 KELITPSSQPVDDSSEVVSLRPDRFESYVGQTDTVETLKIAIQAAKMRGDCLDHVLLHGP 80 Query: 64 PGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 PGLGKTT+++I+ANEMG L TSGP LEK GDL MLTNL D+LFIDEIHRL VE Sbjct: 81 PGLGKTTISHIIANEMGGTLTVTSGPALEKGGDLIGMLTNLARGDILFIDEIHRLPKTVE 140 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 E LYPAMED+ +D + +G ARS + L F L+GATTR G ++SPLRDRFGI + L+F Sbjct: 141 EFLYPAMEDFAVDFVFDKGLHARSHRYRLKQFVLVGATTRVGLISSPLRDRFGIFRSLDF 200 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 Y +L I+ RSA + + + D ALE+ARR+RGTPRIANRLL+RVRDF+ V+ G ++ Sbjct: 201 YTDEELVTIIRRSAGLLNVVLDDGAALELARRSRGTPRIANRLLKRVRDFSMVRSSGEVT 260 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 A AL + +D++G +DR L +I+ + GGPVG++ +AA + EE +T+ DV+EP Sbjct: 261 QKSVAAALSLEGIDSKGLTVLDRNYLRTIIEFYRGGPVGIEAVAATLQEETDTLVDVVEP 320 Query: 304 YLIQQGFLQRTPRGRMATTRAWNHFGI 330 YL++ G + RT GR A+ A+ H GI Sbjct: 321 YLLKIGMVMRTSAGRRASVGAYEHLGI 347 >UniRef50_Q115Z7 Holliday junction ATP-dependent DNA helicase ruvB n=77 Tax=Bacteria RepID=RUVB_TRIEI Length = 386 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 176/327 (53%), Positives = 246/327 (75%) Query: 8 ISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 ++ ++ + IRP+ L+EY+GQ ++ + I I AAK R ++LDHLL++GPPGLG Sbjct: 53 EASAAEKSDNQNEEKIRPQRLDEYIGQKDLKEVLNIAISAAKSRKESLDHLLLYGPPGLG 112 Query: 68 KTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLY 127 KTT++ I+A EM VN + T+ P +EK D+ +L L+ D+LFIDEIHRLS + EE+LY Sbjct: 113 KTTMSLILAAEMEVNCKITTAPAIEKPRDIVGLLVGLQKGDILFIDEIHRLSKMTEEILY 172 Query: 128 PAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVP 187 PAMED++LDI +G+G ++++ I L PFTL+GATT+ GSLTSPLRDRFGI+QRL FY+V Sbjct: 173 PAMEDFRLDITVGQGKSSKTRSIPLKPFTLVGATTKVGSLTSPLRDRFGIIQRLRFYEVD 232 Query: 188 DLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIA 247 +L I+ R+A+ + ++++DGA EVARR+RGTPRIANRLLRRVRD++EVK I+A+IA Sbjct: 233 ELSLIIIRAAKVLNTDITEDGAEEVARRSRGTPRIANRLLRRVRDYSEVKKLTPINAEIA 292 Query: 248 AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQ 307 +AL++ NVD G D+ DR LL +I+ + GGP GL+ +AAA GE+ +TIE+V EPYL+Q Sbjct: 293 GEALELFNVDPLGLDWTDRNLLRTMIENYNGGPAGLETMAAATGEDAQTIEEVYEPYLMQ 352 Query: 308 QGFLQRTPRGRMATTRAWNHFGITPPE 334 GF+QRTPRGR+ T W H G +PP+ Sbjct: 353 IGFMQRTPRGRVVTAAGWRHLGFSPPD 379 >UniRef50_B2S1L1 Holliday junction ATP-dependent DNA helicase ruvB n=25 Tax=Spirochaetaceae RepID=RUVB_BORHD Length = 352 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 153/325 (47%), Positives = 226/325 (69%) Query: 1 MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLI 60 + E +L+++ D + +RPK L ++ GQ ++ + +FIKA++ R +ALDH+ + Sbjct: 3 LEEGSKLLNSDKNFLYDRNESELRPKFLRDFAGQSHIKENLSVFIKASRDRNEALDHVFL 62 Query: 61 FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP 120 GPPGLGKTTLA+I+A EM ++ TS P L+K D+ +LT L+ +LFIDE+HRL P Sbjct: 63 SGPPGLGKTTLASIIAVEMNTTIKVTSAPALDKPKDIVGILTTLDDKSILFIDEMHRLKP 122 Query: 121 VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 180 V+EE+LY AMEDY++D +IG+GPAAR++++ +P FTLIGATT+ G + SPL RFGIV R Sbjct: 123 VIEEMLYIAMEDYKIDWIIGQGPAARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVSR 182 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 E Y +L I+ R++ + ++ D A +A+ +RGTPR+ANRLLRR+RDFA+V Sbjct: 183 FELYSEDELVKIIQRNSIILNVKFEDKAAWLLAKSSRGTPRVANRLLRRMRDFAQVGGYD 242 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 I+ +I + L+ML +D EG D DR +L ++I KF GGPVG++ LA ++GE +++ED Sbjct: 243 LITENIVSDGLEMLKIDHEGLDEQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDF 302 Query: 301 LEPYLIQQGFLQRTPRGRMATTRAW 325 EPYLI +G ++RT RGR AT A+ Sbjct: 303 YEPYLILKGLIERTSRGRKATDFAY 327 >UniRef50_C9M7E4 Holliday junction DNA helicase RuvB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7E4_9BACT Length = 347 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 166/312 (53%), Positives = 232/312 (74%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP L E+ GQ +++ ++ I+++AA+LRG+ LDH L +GPPGLGKTTL+ I+A+EMG + Sbjct: 23 LRPLTLAEFNGQSEIKEKLSIYMQAARLRGEPLDHTLFYGPPGLGKTTLSGIIAHEMGGS 82 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 LR T+GP LEK GDLAA+LT+L+ DVLFIDEIHR+S EEVLY AMED+ + +++G+G Sbjct: 83 LRVTTGPALEKPGDLAAILTSLQDGDVLFIDEIHRMSISTEEVLYSAMEDFSIHLIVGKG 142 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 P AR++ + +P FTL+GATTR G L+SPLR RFGIV++L Y +L I+ R A + + Sbjct: 143 PLARNVTVPMPKFTLVGATTRLGLLSSPLRARFGIVEQLRLYDELELCQILQRGAGLLNV 202 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 S +G +ARR+RGTPR+A RLLRRVRD A+V I + +QA+DML +D GF+ Sbjct: 203 SASSEGLRAIARRSRGTPRVALRLLRRVRDVADVTGQAQIDEALVSQAMDMLGLDDRGFN 262 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 DR+++ V++ F GGPVGL +AAA+ EE +TIED+ EPYLIQQG ++RTPRGR AT Sbjct: 263 AGDRRIITTVVELFSGGPVGLSTIAAALNEEPQTIEDIYEPYLIQQGMIERTPRGRKATE 322 Query: 323 RAWNHFGITPPE 334 +A+ + G+ P+ Sbjct: 323 KAYEYLGLPVPQ 334 >UniRef50_A8EVP9 Holliday junction ATP-dependent DNA helicase ruvB n=19 Tax=Bacteria RepID=RUVB_ARCB4 Length = 345 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 168/327 (51%), Positives = 243/327 (74%), Gaps = 1/327 (0%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + + ED + ++RP ++Y+GQ +++ + +FI A+K R +ALDH+L +GPPGL Sbjct: 5 VEVESVSFEEDNNEISLRPSNWDDYIGQEKIKKNLRVFIDASKKRKEALDHILFYGPPGL 64 Query: 67 GKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVL 126 GKTTL+ +++NEM N++ T+GP++EK+GDLAA+LTNLE D+LFIDEIHRLSP VEE+L Sbjct: 65 GKTTLSYLISNEMNTNIKVTAGPMIEKSGDLAAILTNLEEGDILFIDEIHRLSPAVEEIL 124 Query: 127 YPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQV 186 YPAMEDY+LDI+IG GPAA+++KIDLP FTLIGATTRAG L++PLR+RFG+ R++FY Sbjct: 125 YPAMEDYRLDIIIGSGPAAQTVKIDLPRFTLIGATTRAGMLSNPLRERFGMHFRMQFYTE 184 Query: 187 PDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADI 246 +L I+ +++ +G DD +LE+++R+RGTPR+A RLLRRVRDF+EV+++ +I Sbjct: 185 IELAKIIQKASLKLGKNCEDDASLEISKRSRGTPRVALRLLRRVRDFSEVENEKSIHLQR 244 Query: 247 AAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLI 306 ALD L V+ GFD MD LL +I G P+GL +AAA+ E+ TIED +EPYL+ Sbjct: 245 CKYALDELGVNESGFDEMDINLLELLI-SNRGKPMGLSTIAAALSEDEGTIEDAIEPYLL 303 Query: 307 QQGFLQRTPRGRMATTRAWNHFGITPP 333 G+++RT RGR+A+ + + F ++ P Sbjct: 304 ANGYIERTARGRVASVKTYEMFRLSYP 330 >UniRef50_A0LUK5 Holliday junction ATP-dependent DNA helicase ruvB n=141 Tax=Bacteria RepID=RUVB_ACIC1 Length = 367 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 184/330 (55%), Positives = 240/330 (72%) Query: 4 ADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGP 63 LI A E + A+RP+ L+E+VGQ +VR Q+ + + AK RG DH+L+ GP Sbjct: 16 GRLLIDAHAESDEHAVEAALRPRRLDEFVGQQRVRDQLSLILDGAKQRGRPPDHILLSGP 75 Query: 64 PGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVE 123 PGLGKTTLA IVA E+ +R TSGP ++ AGDLAA+LT L +VLF+DEIHR++ E Sbjct: 76 PGLGKTTLAMIVAAELNTPIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLDEIHRMARPAE 135 Query: 124 EVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 E+LY AMED+++D+++G+GP A I ++L PFTLIGATTR G L PLRDRFG RL+F Sbjct: 136 EMLYLAMEDFRVDVVVGKGPGASVIPLELAPFTLIGATTRTGLLPGPLRDRFGFTARLDF 195 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 Y+ DL+ IV RSAR + + ++ DGA E+ARR+RGTPRIANRLLRRVRD+AEV+ DG I+ Sbjct: 196 YEPADLERIVHRSARLLDVRITPDGAAEIARRSRGTPRIANRLLRRVRDYAEVRADGVIT 255 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 ++A AL + VD G D +DR +L A++ +F GGPVGL +A A+GEE ET+E+V EP Sbjct: 256 CEVAQAALAVYEVDEHGLDRLDRAVLDALVRRFGGGPVGLGTVAVAVGEEPETVEEVAEP 315 Query: 304 YLIQQGFLQRTPRGRMATTRAWNHFGITPP 333 +L + GFL RTPRGRMAT AW H GITPP Sbjct: 316 FLFRAGFLIRTPRGRMATAAAWRHLGITPP 345 >UniRef50_B5YFL1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFL1_DICT6 Length = 332 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 148/313 (47%), Positives = 215/313 (68%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D A+RPK L E++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 13 EPALDNALRPKSLSEFIGQEKIKERLALIINAAKKREEAIDHILFVGPPGVGKTTLALII 72 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P ++K+GDL A+LT +E V+FIDEIHRLSP +EE+LY A+ED + Sbjct: 73 AEEQNTQIKMISAPSIQKSGDLIALLTGIEEKGVIFIDEIHRLSPSLEEILYSALEDGSI 132 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + + LPPFTLIGATTR L++PLRDRFG + L+FY ++ I+ R Sbjct: 133 SIVAGKGPGGKVLSLKLPPFTLIGATTRPALLSTPLRDRFGFIATLDFYTHEEMVKIIER 192 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL +S + EVA+R+RG PRIANR+L+R++D+ +++ + I + L+++ Sbjct: 193 SQKILGLNLSYESIYEVAKRSRGVPRIANRILKRIKDYVDLRDNKNIDLTETKKVLELIG 252 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D G D +DRK+L + DKF GGPVGL LAA + E ETIE + EPYL++ GF+QRT Sbjct: 253 IDENGLDELDRKILFTLKDKFSGGPVGLKTLAAVLNESPETIESIYEPYLLRIGFIQRTS 312 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 313 RGRVITPLGLAHI 325 >UniRef50_B8E2P1 Holliday junction DNA helicase RuvB n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2P1_DICTD Length = 334 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 145/313 (46%), Positives = 219/313 (69%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 E D +RPK L +++GQ +++ ++ + I AAK R +A+DH+L GPPG+GKTTLA I+ Sbjct: 15 EPALDNVLRPKNLSDFIGQERIKDRLALIINAAKKREEAVDHILFVGPPGVGKTTLALII 74 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQL 135 A E ++ S P L+K+GDL A+LT++E ++FIDEIHRL+P +EE+LY A+ED + Sbjct: 75 AEEQNAPIKMVSAPSLQKSGDLIALLTSVEERGIIFIDEIHRLNPSLEEILYSALEDRSV 134 Query: 136 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSR 195 I+ G+GP + + I LPPFTL+GATTR L+SPLRDRFG + L+FY ++ I+ R Sbjct: 135 SIVTGKGPGGKVLSIKLPPFTLVGATTRPALLSSPLRDRFGFIANLDFYTHEEMVKIIER 194 Query: 196 SARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLN 255 S + +GL + + +E+A+R+RG PRIANR+L+R++D+ ++K + I+ + + L+++ Sbjct: 195 SQKILGLNLPYESIIEIAKRSRGVPRIANRILKRIKDYIDLKEEKNINLEETKRVLELIG 254 Query: 256 VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTP 315 +D +G D +DRK+L A+ DKF GGPVGL LAA + E +TIE + EPYL++ GF+QRT Sbjct: 255 IDEKGLDELDRKILFALRDKFSGGPVGLKALAAVLNESPDTIESIYEPYLLRIGFIQRTS 314 Query: 316 RGRMATTRAWNHF 328 RGR+ T H Sbjct: 315 RGRIITPLGLAHI 327 >UniRef50_A8ZUH7 Holliday junction ATP-dependent DNA helicase ruvB n=2 Tax=Desulfobacteraceae RepID=RUVB_DESOH Length = 343 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 157/309 (50%), Positives = 209/309 (67%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP E+YVGQ + + I I AAK R + L+H+L GPPGLGKTTLA+I+A EMG + Sbjct: 32 LRPCDFEDYVGQDRTVETLRIAIAAAKQRSEPLEHVLFHGPPGLGKTTLAHIIAAEMGTS 91 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 L TSGP LEK GDL MLT+L+ D+LF+DEIHRL EE LYPAMED+ +D + +G Sbjct: 92 LTITSGPALEKGGDLIGMLTHLKRGDILFVDEIHRLPRTTEEFLYPAMEDFAVDFVFDKG 151 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 AR + L F L+GATTR G L++PLRDRFGI ++ +FY DL IVSRSA MGL Sbjct: 152 IHARCHRYRLNQFVLVGATTRVGLLSAPLRDRFGIFRKFDFYSRQDLARIVSRSAALMGL 211 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 + + +E+ARR+RGTPRI NRLL+RVRD+ +V+H G I+ AL + VD +G Sbjct: 212 TIDETCTMELARRSRGTPRIVNRLLKRVRDYVQVRHGGVITVSAIDDALALEGVDEKGLT 271 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 +DR L +I + GGPVG++ + A + EE +T+ DV+EP+L+ +G LQRT GR AT Sbjct: 272 GLDRSYLETIIQYYGGGPVGIEAIGATLQEETDTLVDVVEPFLLAEGLLQRTSSGRKATE 331 Query: 323 RAWNHFGIT 331 A+ H G+ Sbjct: 332 AAYRHLGVQ 340 >UniRef50_B6ITI4 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Proteobacteria RepID=RUVB_RHOCS Length = 362 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 197/320 (61%), Positives = 251/320 (78%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 D A+ +IRP L E++GQ QVR + +FI+AA+ R +ALDH+L+FGPPGLGKTTLA IVA Sbjct: 19 DAAEASIRPLSLAEFIGQRQVRENLSVFIQAARGRKEALDHVLLFGPPGLGKTTLAQIVA 78 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLD 136 E+ V R TSGPV+ KAGDLAA+LTNL+PHDVLFIDEIHRLSP VEE+LYPAMED+QLD Sbjct: 79 KELNVGFRATSGPVIAKAGDLAALLTNLQPHDVLFIDEIHRLSPAVEEILYPAMEDFQLD 138 Query: 137 IMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRS 196 ++IGEGPAARS++IDLPPFTL+GATTR+G +T PLR+RFGI R++FY+ +LQ IV+R Sbjct: 139 LIIGEGPAARSVRIDLPPFTLVGATTRSGLITRPLRERFGIPLRMQFYEPEELQLIVARG 198 Query: 197 ARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNV 256 AR +G+E++ +GALE+ARR+RGTPR+A RLLRRVRD V + A A AL L V Sbjct: 199 ARILGMELTGEGALEIARRSRGTPRVAGRLLRRVRDICGVAGLAVVDAAAAGGALTRLEV 258 Query: 257 DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPR 316 D GFD MDR+ L + D + GGPVG++ L AA+GE+R+ +E+ +EPYLIQQG LQRTPR Sbjct: 259 DRLGFDAMDRRYLRCIADNYGGGPVGVETLGAALGEQRDVLEETIEPYLIQQGLLQRTPR 318 Query: 317 GRMATTRAWNHFGITPPEMP 336 GR+ T + + G+ PP P Sbjct: 319 GRLLTDSGYRYLGLPPPATP 338 >UniRef50_B0B9E8 Holliday junction ATP-dependent DNA helicase ruvB n=8 Tax=Chlamydia RepID=RUVB_CHLT2 Length = 334 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 155/313 (49%), Positives = 219/313 (69%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L E+ GQ Q++ ++++F++AA R + H L +GPPGLGKT+LA+I+AN +G Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 L SGP L K DL +LT L+ D+ FIDEIHR+ EE LYPAMED+++DI + G Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQEGDIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSG 137 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 P ARS+++DL PFTL+GATTRAG L+ PLR RF R+++Y DL I+SRS++ + + Sbjct: 138 PGARSVRLDLAPFTLVGATTRAGMLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAI 197 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E + + LE+ARRARGTPR+AN LLR VRDFA+++ I++ +A +AL ML +D G + Sbjct: 198 EANQETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLN 257 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 +D KLL +ID + GGPVG+ LA A+GE+ T+ED+ EP+LI +G +QRT RGR+AT Sbjct: 258 EIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATP 317 Query: 323 RAWNHFGITPPEM 335 A+ H P + Sbjct: 318 LAYEHLNRNPKDR 330 >UniRef50_D2R652 Holliday junction DNA helicase RuvB n=5 Tax=Planctomycetaceae RepID=D2R652_9PLAN Length = 352 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 159/319 (49%), Positives = 213/319 (66%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 +PE DR +RP+ + + VGQ +V ++ I + AA+ R D L H+L GPPGLGKTT Sbjct: 29 SAEIPEPEEDRDLRPQRMADMVGQQEVIERLRIVVDAARKRSDTLGHILFDGPPGLGKTT 88 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAM 130 AN + E+ V L T+SGP L+ DL LTNLEP+ VLFIDEIHR+ VEE LY AM Sbjct: 89 FANCIPRELNVPLVTSSGPALKAPKDLIPYLTNLEPNSVLFIDEIHRMPKPVEEYLYTAM 148 Query: 131 EDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQ 190 ED++LDI++GEG AR+I + L PFTLIGATTRAG L+SPLRDRF + + L FY V +L Sbjct: 149 EDFRLDIVLGEGVNARTINLKLKPFTLIGATTRAGMLSSPLRDRFAVREHLGFYTVDELT 208 Query: 191 YIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA 250 IV RSA + ++ D A+E+ARR+RGTPRIAN LR VRD+AE K G I+ +A A Sbjct: 209 EIVRRSAAKLSCNIAGDAAIEIARRSRGTPRIANHRLRWVRDYAEAKSSGQITVAVAQAA 268 Query: 251 LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGF 310 L M +D G D DR L ++ F GGPVG+D++A + +T+ D +EP+L++ Sbjct: 269 LAMSGIDILGLDKQDRAYLETILRVFSGGPVGVDSVAHTMNLATDTLSDEVEPFLLRCEL 328 Query: 311 LQRTPRGRMATTRAWNHFG 329 + R+PRGRM T++A+ H Sbjct: 329 IVRSPRGRMLTSKAFEHLK 347 >UniRef50_Q3YRD9 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=canis group RepID=RUVB_EHRCJ Length = 329 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 162/308 (52%), Positives = 227/308 (73%), Gaps = 3/308 (0%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 IRP LL+E++GQ V + ++IFI AA R + +DH+L++GPPGLGKTTLA+I+A E+ VN Sbjct: 19 IRPNLLDEFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGLGKTTLAHIIAKELKVN 78 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 R+T+GP+L KAGDLAA+LTNL+ D+LFIDEIHRL+ +EE+LY AMED+ LDI++GEG Sbjct: 79 FRSTAGPLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEILYSAMEDFCLDIIVGEG 138 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 AR++++DLP FTL+GATTR G L++PLRDRFGI LEFY +L ++ R+A+ + Sbjct: 139 CGARTLRVDLPKFTLVGATTRIGLLSNPLRDRFGIPIHLEFYSTEELIKVIQRAAKVIKT 198 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEV-KHDGTISADIAAQALDMLNVDAEGF 261 ++SD GA E++ RARGTPRIA RLLRR+RDF EV +H+ TI+ A +AL L +D G Sbjct: 199 DISDSGAQEISLRARGTPRIALRLLRRIRDFIEVTEHNKTITDTFADKALLRLGIDKLGL 258 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D D + L + D P G+D +++ + E+ IE+ +EPYLI+ F+QRTPRGR+ T Sbjct: 259 DRQDIQYLKFIHDS--NNPTGIDTISSGLSEDTGNIEETIEPYLIKINFIQRTPRGRVIT 316 Query: 322 TRAWNHFG 329 +A ++ Sbjct: 317 QKAISYLK 324 >UniRef50_B9DLF5 DNA polymerase III gamma and tau subunits n=60 Tax=Staphylococcus RepID=B9DLF5_STACT Length = 583 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 111/322 (34%), Gaps = 42/322 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ V + I +G + GP G GKT++A Sbjct: 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAIA----KGKQSHAYIFSGPRGTGKTSIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 + A + P E D+ +T DV+ ID + + + ++V Y Sbjct: 57 VFAKAINCPNSVDGEPCNEC--DICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSQSKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + A +E D+ +A+ + G R A ++ + F D Sbjct: 175 -FKAIGLDQIIERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAF----GD 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPV-----GLDNLAAAIGEER 294 ++ A + D L A+++ G V A E Sbjct: 230 EHLTLQDALNVTGSV----------DEASLNALLNDVANGQVKDAFARYHQFIAEGKEVN 279 Query: 295 ETIEDVLEPYLIQQGFLQRTPR 316 I D++ Y ++ + +T + Sbjct: 280 RLINDLI--YFVRDTIMNKTAQ 299 >UniRef50_Q48KQ6 DNA polymerase III, subunits gamma and tau n=17 Tax=Pseudomonadaceae RepID=Q48KQ6_PSE14 Length = 737 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 110/318 (34%), Gaps = 31/318 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E VGQ V + + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPRSFREMVGQAHVLKALINALDSQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + TS P + + + D++ ID + +++ V Y Sbjct: 57 IIAKCLNCETGITSTPCGTCS--VCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ ++ A ++ PP I ATT L + + R Sbjct: 115 PSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + DD + R A G+ R A L + F + Sbjct: 174 SLKNMTPERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAF----GE 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + A L L+ +L A+++ G + A G + + Sbjct: 230 GKVMAADVRAMLGTLDHGQV------FDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLS 283 Query: 300 VLEPYLIQQGFLQRTPRG 317 + L + Q P G Sbjct: 284 EILNVLHRVAIAQALPEG 301 >UniRef50_Q1WSU3 DNA polymerase III subunit gamma/tau n=24 Tax=Bacilli RepID=Q1WSU3_LACS1 Length = 579 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 102/319 (31%), Gaps = 31/319 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ V ++ I + L GP G GKT+ A Sbjct: 1 MSYQALYRVWRPQRFMDLVGQEMVTKTLKNAI----ITHQTSHAYLFTGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + P E + +T +DV+ ID + + + ++V Y Sbjct: 57 IFAKAINCRFSKEGEPCNEC--ETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E DY++ I + A ++ PP I ATT + + + R Sbjct: 115 PTEADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + ++ D +A+ A G R A LL +V F D Sbjct: 175 -FKRITAESILQRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISF----GD 229 Query: 240 GTISADIAAQALDML------NVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 ++ D A + N L + G + I Sbjct: 230 NNVTLDNALLVTGSVTQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYC 289 Query: 294 RETIEDVLEPYLIQQGFLQ 312 R+ + P ++ G L Sbjct: 290 RDLLLYQQAPEMVSDGELG 308 >UniRef50_B7CCG9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCG9_9FIRM Length = 587 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 111/305 (36%), Gaps = 32/305 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP +E VGQ + ++ I ++ L GP G GKT++A Sbjct: 1 MAYQALYRKYRPSNFDEVVGQTHIIQTLKNAI----IQNRIAHAYLFCGPRGTGKTSIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + P + M N D++ ID + + ++++V Y Sbjct: 57 IFAKTLNCTNSQ-DAPCGVC--ENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYA 113 Query: 129 AM-EDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 M Y++ I+ A I+ PP I ATT + + R Sbjct: 114 PMQGKYKIYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFD 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V D++Y +S + G+E+ DG +A+ A G R A +L + + Sbjct: 174 -FNKVSVNDIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSH-- 230 Query: 240 GTISADIAAQALDMLNVDAEG--FDYMDRKLLLAVIDKFFG-GPVGLDN---LAAAIGEE 293 I + + ++ + G F + +K + I +G+D A I Sbjct: 231 --IDVNDIRKIYGVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHML 288 Query: 294 RETIE 298 ++++ Sbjct: 289 KDSLI 293 >UniRef50_C0WD56 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD56_9FIRM Length = 628 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 117/339 (34%), Gaps = 48/339 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ +R + +++ ++ L GP G GKT+ A Sbjct: 1 MSYVALYRTWRPQDFDGLVGQEHIRKALTNALESGRIS----HAYLFTGPRGTGKTSTAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I+A + T P D +T DV+ ID I + + E+V Sbjct: 57 ILAKALNCEKGPTPHPCNTC--DHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + + A ++ PP I ATT + + + R Sbjct: 115 PVSSRYKVYIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V D+ + + A + D +A +A G R A LL + A Sbjct: 175 -FRRVTVDDIAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMA----- 228 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF--FGGPVGLDNLAAAIGEERET- 296 ++A+ Q L + R + A+++K P LD L + + ++ Sbjct: 229 NPVTAETVRQVLGIAG----------RDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVT 278 Query: 297 -IEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 + L Y+ Q P A+ +T Sbjct: 279 QVLTELLEYMRALLLYQADP--------AYQEIYLTDTA 309 >UniRef50_Q21L32 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=8 Tax=Gammaproteobacteria RepID=Q21L32_SACD2 Length = 690 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E +GQ V + + +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPRTFREMIGQEHVLRALINALDHGRLH----HAYLFTGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + +S P E + ++ D++ +D + +++ V Y Sbjct: 57 ILAKCLNCETGVSSEPCGECSA--CVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + +S + + ++AR A G+ R A L + F Sbjct: 175 -LKNMSPERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISF----GG 229 Query: 240 GTISADIAAQALDMLNV-----DAEGFDYMDRKLLLAVIDKFFGGPVGLDN-LAAAIGEE 293 G +S D A L ++ D +L + KF D LA I Sbjct: 230 GKVSEDEVASMLGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLL 289 Query: 294 RETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGI 330 P + + RT A+ A + Sbjct: 290 HRIAIAQALPDALDNSYGDRTQILEFASKLAPEDVQL 326 >UniRef50_C9KLC0 DNA polymerase III, gamma and tau subunit n=2 Tax=Veillonellaceae RepID=C9KLC0_9FIRM Length = 631 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 111/304 (36%), Gaps = 32/304 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ + + I + + L GP G GKT+ A Sbjct: 1 MAYIALYRKWRPQTFKDLVGQEHISRTLANAITSGHIG----HAYLFAGPRGTGKTSTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + T P + + + + DV ID I + + E V + Sbjct: 57 ILAKALNCEHGPTPEPCGQC--EQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFA 114 Query: 129 AM-EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 + Y++ I + E A ++ PP I ATT A + ++ R Sbjct: 115 PVDGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + V +++ + M +E D+ +A +A G R A +L + AE Sbjct: 175 -FKRITVEEIESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAE---- 229 Query: 240 GTISADIAAQALDMLNVD------AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 GTI+A+ Q L ++ D ++ L + + G L + + + Sbjct: 230 GTITAERVRQILGLVGHDWIYKMTKALAARNVQEALQILAELLRDGK-DLKQILSELSLH 288 Query: 294 RETI 297 ++ Sbjct: 289 LRSL 292 >UniRef50_A3QF53 DNA polymerase III, subunits gamma and tau n=3 Tax=Bacteria RepID=A3QF53_SHELP Length = 1113 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 109/332 (32%), Gaps = 41/332 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + A + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEQGVTATPCGQCAS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + + D +A+ A G+ R A L + F Sbjct: 175 -LKSLTLDEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAF----GA 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL-----DNLAAAIGEER 294 G + L + D ++ ++ G V L ++ + + Sbjct: 230 GQVRLTQVQTMLGTI----------DEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPH 279 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMATTRAWN 326 E + +LE L Q Q P + A Sbjct: 280 EVLRSLLE-LLHQITLTQFAPSAAQLSQYAEQ 310 >UniRef50_B7VL96 DNA polymerase III subunit tau n=11 Tax=Vibrionales RepID=B7VL96_VIBSL Length = 752 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 114/356 (32%), Gaps = 45/356 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP +E VGQ V + +E + +L L G G+GKTT+ Sbjct: 1 MSYLALARKWRPTKFKEVVGQAHVLTALENALSQNRLH----HAYLFSGTRGVGKTTIGR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + TS P E A + D+L ID + +++ V Y Sbjct: 57 LFAKGLNCETGITSTPCGECA--TCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V ++ + + +A A G+ R A L + + Sbjct: 174 HLKPISVDNIHEQLDHILEQENVTSEPRALGMIAHAADGSMRDALSLSDQAIAL----GN 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI---- 290 G + D A L L+ D E + +A I V D L + + Sbjct: 230 GNVVTDTVAHMLGTLDTDQAIHLLEAISSKQPQQAMACIQALAENGVEWDGLLSQLATQL 289 Query: 291 -----GEERETIEDVLEPYLIQQGFLQRT--PRGR----MATTRAWNHFGITPPEM 335 + + D +P + + +T P+ + ++P Sbjct: 290 HRLAMYQALPSTLDKAQPDAERLELMSKTLSPQDIQLYYQIVLKGRQDLPLSPTAR 345 >UniRef50_C9L9Q0 DNA polymerase III, gamma and tau subunit n=10 Tax=Bacteria RepID=C9L9Q0_RUMHA Length = 538 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 110/317 (34%), Gaps = 31/317 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A Sbjct: 1 MGYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + P + +V+ ID + + + EEV Y Sbjct: 57 ILARAVNCEHPVDGSPCNTCK--TCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYR 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + A ++ PP I ATT A + + R Sbjct: 115 PTTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + G ++ + +A+ A G+ R A LL + F Sbjct: 175 -FRRITADTIAARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYL---G 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ + + L VD + F M R++L G LD + E + + D Sbjct: 231 EKLTYEKVLENLG--AVDTQVFSRMLRQILQ---QDTAGTIKTLDEIIIQGRELGQFVTD 285 Query: 300 VLEPYLIQQGFLQRTPR 316 + + ++ L T Sbjct: 286 FI--WYLRNLLLISTSE 300 >UniRef50_B1X4N3 Holliday junction DNA helicase RuvB n=2 Tax=cellular organisms RepID=B1X4N3_PAUCH Length = 356 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 149/310 (48%), Positives = 215/310 (69%), Gaps = 1/310 (0%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RPK L +Y+GQ +++ + I IKAA + +DH+L++GP GLGKTT+A ++A E+GV Sbjct: 46 LRPKSLNDYIGQKELKQILRIAIKAAYTQEGTMDHVLLYGPAGLGKTTIALVLAAELGVP 105 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 R S P +E+ D+ +L NLEP++VLFIDEIHRL+ + EE+LY AMED++LDI +G+ Sbjct: 106 CRIISAPAIERPRDIIGLLMNLEPNEVLFIDEIHRLNRISEELLYAAMEDFRLDISVGKS 165 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 AR I + PFTL+GATT AG+L+ LRDRFG+VQRL Y + DL I+ R+A + L Sbjct: 166 RVARIRNISINPFTLVGATTHAGALSPALRDRFGLVQRLSLYSLEDLCNIIKRTANILLL 225 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEV-KHDGTISADIAAQALDMLNVDAEGF 261 + + LE+A+R RGTPRIANRLLRR+RD + +D I+ ++A + L + VD G Sbjct: 226 TLDEAAVLEIAQRCRGTPRIANRLLRRIRDVTSLRDNDNYINEELANEVLSLHQVDNRGL 285 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 D DR++L +I+ + GGPVGL +AA++GE+ +E +EP+L+Q GFL+RTPRGR+ T Sbjct: 286 DANDRRILQFLIENYGGGPVGLQTIAASLGEDATILESFVEPFLMQMGFLKRTPRGRIVT 345 Query: 322 TRAWNHFGIT 331 + H G Sbjct: 346 LEGYKHLGWP 355 >UniRef50_C0N3Y5 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N3Y5_9GAMM Length = 569 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 117/335 (34%), Gaps = 38/335 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK EE VGQ V + + +L L G G+GKTTLA Sbjct: 1 MSYLVLARKWRPKSFEEVVGQQHVLRALINGLDQNRLH----HAFLFSGTRGVGKTTLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + +S P + + D++ +D + +++ V Y Sbjct: 57 IFAKSLNCEQGVSSTPCGVCQS--CTEVDSGRFVDLIEVDAASRTKVDDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PSQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLFATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L ++ + + ++ + ++AR A G+ R A LL + F Sbjct: 175 -LRRLELTQISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G ++++ Q L ++ D +L A++ + + AA+G + + D Sbjct: 230 GEVTSESVFQMLGSISQDQLIL------ILDALLKQDGKALLAQSAELAALGRDFHVVFD 283 Query: 300 VLEPYLIQQGFLQRTP-------RGRMATTRAWNH 327 L L Q LQ P T A Sbjct: 284 FLLSALQQIATLQLVPDLEPVEANSPQLTELAAQF 318 >UniRef50_B4RLX5 DNA polymerase III subunits gamma and tau n=24 Tax=Neisseria RepID=B4RLX5_NEIG2 Length = 736 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 97/296 (32%), Gaps = 30/296 (10%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 + + V R RPK + VGQ V ++ + +L L+ G G+GK Sbjct: 25 NQEKNMTYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLH----HAYLLTGTRGVGK 80 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVE 123 TT+A I+A + P + D+L ID I + V+E Sbjct: 81 TTIARILAKSLNCENAQHGEPCGVCQS--CTQIDAGRYVDLLEIDAASNTGIDNIREVLE 138 Query: 124 EVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 Y P Y++ I + A ++ PP I ATT + + R Sbjct: 139 NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 198 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L + ++ + + R A G+ R A LL + Sbjct: 199 CLQFV-LRNMTAQQVADHLAHVLDSEKIAYDPPALQLLGRAAAGSMRDALSLLDQAIAL- 256 Query: 235 EVKHDGTISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDN 285 G ++ + Q + ++ G D + LLA + VG DN Sbjct: 257 ---GSGKVAENDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAVGFDN 309 >UniRef50_P06710 DNA polymerase III subunit gamma n=112 Tax=Enterobacteriaceae RepID=DPO3X_ECOLI Length = 643 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 115/318 (36%), Gaps = 31/318 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + VGQ V + + + ++ L G G+GKT++A Sbjct: 1 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 ++A + T+ P D + D++ ID + +++ V Y Sbjct: 57 LLAKGLNCETGITATPCGVC--DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V +++ + + +AR A G+ R A L + D Sbjct: 174 HLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA----SGD 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G +S + L L+ D L+ A+++ + L N AAA G E E + Sbjct: 230 GQVSTQAVSAMLGTLDDDQA------LSLVEAMVEANGERVMALINEAAARGIEWEALLV 283 Query: 300 VLEPYLIQQGFLQRTPRG 317 + L + +Q +P Sbjct: 284 EMLGLLHRIAMVQLSPAA 301 >UniRef50_B2A300 DNA polymerase III, subunits gamma and tau n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A300_NATTJ Length = 589 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 105/311 (33%), Gaps = 31/311 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK + VGQ V + ++ I +++ L GP G GKT++A Sbjct: 1 MDYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRIS----HAYLFSGPRGTGKTSVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 + A + + + P + + + D+L ID I + + + V Y Sbjct: 57 VFAKALNCDHSQDNEPCGQCSRCIEH--DRGTFMDILEIDAASNRGIDEIREIRDHVAYS 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E +Y++ I + E A ++ PP I ATT L + R Sbjct: 115 PSEGNYKVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 ++ + L + + +A+++ G R A LL + F + Sbjct: 175 -FYRLSTSKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSF--LGSG 231 Query: 240 GTISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 + D + ++ D D +L ++ + + + Sbjct: 232 EQLKVDHVLEVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKD---FGQFLNDLI 288 Query: 295 ETIEDVLEPYL 305 + D+L L Sbjct: 289 VYLRDLLLFKL 299 >UniRef50_Q1G919 DNA polymerase III, gamma/tau subunit n=26 Tax=Lactobacillus RepID=Q1G919_LACDA Length = 607 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 63/336 (18%), Positives = 117/336 (34%), Gaps = 31/336 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ + ++ + +RG L GP G GKT+ A Sbjct: 1 MAYQALYRKWRPRTFDDVVGQEAITDTLKNSL----IRGKVSHAFLFAGPRGTGKTSCAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYP 128 I A + P E + LAA D++ +D + + ++++V Y Sbjct: 57 IFAKALNCLNLQEGEPCNECSNCLAA--DQGAMPDIIEMDAASNNSVDEIRDLLDKVHYA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PTEGKYKVYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + G+E D +A+ A G R A +L ++ F Sbjct: 175 -FKRFSNEAMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF----EK 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ + A + KLLLA+++ + L A G + I + Sbjct: 230 SSVRYEDALEVTGFAA------QEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILN 283 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEM 335 + +Q +T +G T P+ Sbjct: 284 EIISLTVQAMLFTKTGQGEFLTDDFAQEIAQQSPDR 319 >UniRef50_C4ZB56 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridiales RepID=C4ZB56_EUBR3 Length = 523 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 112/316 (35%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A Sbjct: 1 MSYQALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + P E +T +V+ ID + + + EEV Y Sbjct: 57 IFAKAVNCEHPVDGSPCGECPS--CRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYR 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + A ++ PP I ATT A + + R Sbjct: 115 PTEGRYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + +S +E+ + VA+ G+ R A LL + F Sbjct: 175 -FHRISIDTIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAF---HLG 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ + + L VD E F + R++L + G L L E + + D Sbjct: 231 EKLTYENVLEVLG--AVDTEVFSRLLRRILD---EDVTGAIRILGELIDEGRELSQLVND 285 Query: 300 VLEPYLIQQGFLQRTP 315 + ++ L ++ Sbjct: 286 FT--WYMRNLLLLQSS 299 >UniRef50_C5TP18 DNA polymerase III subunit tau n=3 Tax=Neisseriaceae RepID=C5TP18_NEIFL Length = 666 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 104/323 (32%), Gaps = 41/323 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ V + + +L L+ G G+GKTT+A Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALRNALDEGRLH----HAYLLTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + P + + + + D+L ID I + V+E Y Sbjct: 57 ILAKSLNCENAVHGEPCGQC--ESCTQIDSGRYVDLLEIDAASNTGIDNIREVLENAQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + A ++ PP I ATT + + R Sbjct: 115 PTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFV 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + ++ + + R A G+ R A LL + Sbjct: 175 -LRNMTTQQVAEHLAHVLDRENVPYQPQALQLLGRAAAGSMRDALSLLDQAIAM----GS 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 G ++ Q + ++ EG + + LL + +G D+ A + Sbjct: 230 GKVAEQDVRQMIGAVDKQYLFELLEGIINQNGEALLEKAQEMSARAIGFDSALAELAM-- 287 Query: 295 ETIEDVLEPYLIQQGFLQRTPRG 317 L + +Q P Sbjct: 288 ---------LLQRLALIQTIPSA 301 >UniRef50_Q7NXL6 DNA polymerase subunits gamma and tau n=2 Tax=cellular organisms RepID=Q7NXL6_CHRVO Length = 639 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 35/281 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ V + +K +L L+ G G+GKTT+A Sbjct: 1 MSYQVLARKWRPKRFADLVGQEHVVRALSNALKEQRLH----HAYLLTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + TT+ P E + + D+L ID I + V+E Y Sbjct: 57 ILAKSLNCETGTTAEPCGEC--QACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P M +++ I + A ++ PP I ATT + + R Sbjct: 115 PTMGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + ++ G+ + R A G+ R A LL + + Sbjct: 174 SLRNMTPQQVSSHLAHMLDIEGIHYEAPALALLGRAASGSMRDAQSLLDQAIAY----GL 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP 280 G + D L + DR+ L ++ Sbjct: 230 GEVKEDGVRAMLGAV----------DRRYLFTLLQALAASD 260 >UniRef50_A9KQC7 DNA polymerase III, subunits gamma and tau n=6 Tax=Clostridiales RepID=A9KQC7_CLOPH Length = 522 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 114/323 (35%), Gaps = 41/323 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP E+ GQ + + ++ IKA ++ L G G GKTT+A Sbjct: 1 MSYMALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIG----HAYLFCGTRGTGKTTVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + P E A + + + +V+ ID + + +VEEV Y Sbjct: 57 ILAKTVNCEHPIDGNPCNECA--MCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYS 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E +Y++ I + A ++ PP I ATT + + R Sbjct: 115 PTEGNYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ + G+E + VAR A G+ R A LL + F Sbjct: 175 -FRRVTIDEITKRLRVITEKEGIEAEEKALRYVARAADGSFRDALSLLDQCIAFYF---G 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-----LDNLAAAIGEER 294 +++ D AL + D ++ ++ G V L+ L E Sbjct: 231 QSLTYDNVLDALGTV----------DIEVFARLLRYIRKGSVTDCVAILEELIIQGRELT 280 Query: 295 ETIEDVLEPYLIQQGFLQRTPRG 317 + D + ++ L +T Sbjct: 281 QFTIDFT--WYLRNLLLAKTSED 301 >UniRef50_A3D5Q4 DNA polymerase III, subunits gamma and tau n=38 Tax=cellular organisms RepID=A3D5Q4_SHEB5 Length = 1147 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 108/329 (32%), Gaps = 39/329 (11%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 + G+++ V R RP ++ VGQ V + + +L L G G+GK Sbjct: 23 TLGSSMSYQVLARKWRPATFDQMVGQSHVLHALTNALSQQRLH----HAYLFTGTRGVGK 78 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVE 123 T+LA + A + T+ P + D++ +D + +++ Sbjct: 79 TSLARLFAKGLNCEQGVTATPCGACGS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLD 136 Query: 124 EVLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 V Y P +++ ++ A ++ PP + ATT L + R Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L+ ++ ++ + +A+ A G+ R A L + F Sbjct: 197 CLQFN-LKSLTQGEIGTQLNHILTQEQFPFDAEAIKLLAKAANGSMRDALSLTDQAIAF- 254 Query: 235 EVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL--DNLAAAI-- 290 G + L + D + ++A++ +G+ A + Sbjct: 255 ---GGGNVMLTQVQTMLGSI----------DEQHVVALLKALTDADIGVLMHTCAQVLAY 301 Query: 291 GEERETIEDVLEPYLIQQGFLQRTPRGRM 319 G + + + L L Q Q P Sbjct: 302 GADAQEVLRSLLELLHQITLTQFAPAAAQ 330 >UniRef50_B6EJ42 DNA polymerase III subunit tau n=8 Tax=Vibrionaceae RepID=B6EJ42_ALISL Length = 714 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 111/316 (35%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ VGQ V + +E + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPHHFKDVVGQSHVLTALENALDHNRLH----HAYLFSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + TS P + + D+L ID + +++ V Y Sbjct: 57 LFAKGLNCEEGITSTPCGVCS--TCKEIDEGRFVDLLEIDAASRTKVEDTRDLLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP I ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V + + + +A A G+ R A L + + Sbjct: 174 HLKHISVDQIHAQLDLVLDKEEVSKDGRALGLIAHAADGSMRDALSLTDQAIAL----GN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G ++ADI + L L+ D ++L A+ K + N A IG E + + Sbjct: 230 GNVTADIVSMMLGTLDTDQA------IRILEAISTKNMQTLMSCINDLADIGVEWDGLAK 283 Query: 300 VLEPYLIQQGFLQRTP 315 + L + Q P Sbjct: 284 EIAAQLHKLAMYQALP 299 >UniRef50_B5FFM6 DNA polymerase III subunit tau n=2 Tax=Vibrio fischeri RepID=B5FFM6_VIBFM Length = 709 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 113/316 (35%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ VGQP V + +E + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPHHFKDVVGQPHVLTALENALDHNRLH----HAYLFSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + TS P + + D+L ID + +++ V Y Sbjct: 57 LFAKGLNCEEGITSTPCGVCS--TCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V + + + +A A G+ R A L + + Sbjct: 174 HLKHISVDQIHEQLDFVLDKEEVSKEARALGLIAHAADGSMRDALSLTDQAIAL----GN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G+++A+I + L L+ D ++L A+ K + N A IG E + + Sbjct: 230 GSVTAEIVSAMLGTLDTDQA------IRILEAISTKNMQTLMNCVNDLADIGVEWDGLAK 283 Query: 300 VLEPYLIQQGFLQRTP 315 L L + Q P Sbjct: 284 ELANQLHKLAMYQALP 299 >UniRef50_A1RIP8 DNA polymerase III, subunits gamma and tau n=7 Tax=Shewanella RepID=A1RIP8_SHESW Length = 984 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 109/325 (33%), Gaps = 39/325 (12%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 + G+++ V R RP E+ VGQ V + + +L L G G+GK Sbjct: 23 TLGSSMSYQVLARKWRPATFEQMVGQSHVLHALTNALSQQRLH----HAYLFTGTRGVGK 78 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVE 123 T+LA + A + T+ P + D++ +D + +++ Sbjct: 79 TSLARLFAKGLNCEQGVTATPCGVCGS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLD 136 Query: 124 EVLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 V Y P +++ ++ A ++ PP + ATT L + R Sbjct: 137 NVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 196 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L+ ++ ++ L + +A+ A G+ R A L + F Sbjct: 197 CLQFN-LKSLTQDEIGTQLNHILTQEQLPFEVEALTLLAKAANGSMRDALSLTDQAIAF- 254 Query: 235 EVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP--VGLDNLAAAI-- 290 GT+ L + D + ++A++ V + A + Sbjct: 255 ---GGGTVMLTQVQTMLGSI----------DEQHVIALLKALTDADITVLMQTSAQVLAY 301 Query: 291 GEERETIEDVLEPYLIQQGFLQRTP 315 G + + + L L Q Q P Sbjct: 302 GADAQEVLRSLLELLHQITLTQFAP 326 >UniRef50_Q5QWS2 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina loihiensis RepID=Q5QWS2_IDILO Length = 681 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 113/324 (34%), Gaps = 43/324 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V +E + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPSQFAEVVGQQHVLKPLEHALDKQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P + + + D+L ID + +++ V Y Sbjct: 57 ILAKALNCEEGITATPCGKCSA--CLEIEQGRFVDLLEIDAASRTKVEDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ D+ +S ++ + +AR ARG+ R A L + + Sbjct: 175 -LKALSNDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAIA----QGG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G++S D + L + V + A+++ G + + + + D Sbjct: 230 GSVSIDSVRRMLGNVPVAD----------IAALLESVLEGDA--EAVMQRVDSMVSMVPD 277 Query: 300 ------VLEPYLIQQGFLQRTPRG 317 L+ L Q +Q+ P Sbjct: 278 LSSVLVELQSLLHQLALVQQVPSA 301 >UniRef50_Q15RT3 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15RT3_PSEA6 Length = 914 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 119/338 (35%), Gaps = 32/338 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V + + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPNNFSELVGQEHVVAAISNALDNDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I + + L S P + + + D+L ID + +++ V Y Sbjct: 57 IFSKSLNCELGMGSKPCGKCS--TCVEIEQGNFVDLLEIDAASRTKVEDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PSRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + L+ + + ++AR A+G+ R A L + + + Sbjct: 175 -LKALSRAQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAIA----QGN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G +S I L +++ KLL AV++K L + + + + + Sbjct: 230 GNVSLSIVTDMLGLMDKTQV------LKLLNAVLNKQNESVFELVDFMSEQAVDYSQVLN 283 Query: 300 VLEPYLIQQGFLQRTPRGRMA-TTRAWNHFGITPPEMP 336 L L Q Q P T A + + +P Sbjct: 284 ELMSLLHQVALTQFVPDACKLETISARAIYQLAKNALP 321 >UniRef50_C7HNJ4 DNA polymerase III, subunits gamma and tau n=3 Tax=Clostridia RepID=C7HNJ4_9THEO Length = 394 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 27/304 (8%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RPK +E VGQ + ++ IK K+ L G G GKT++A I Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIG----HAYLFTGTRGTGKTSVAKIF 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + T P ++ + N DVL ID ++ + + E V+Y P+ Sbjct: 58 AKAVNCLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPS 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I ATT L + R Sbjct: 116 QAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + R G+++ + G +A G+ R A LL + + +G Sbjct: 175 KRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASY----KEGL 230 Query: 242 ISADIAAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 I+ + + L + N V DYM+ K + A + + ++ + + D Sbjct: 231 ITYEDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRD 290 Query: 300 VLEP 303 ++ Sbjct: 291 MVLY 294 >UniRef50_Q4L3D4 DNA polymerase III gamma and tau subunits n=6 Tax=Bacilli RepID=Q4L3D4_STAHJ Length = 571 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 102/311 (32%), Gaps = 35/311 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ V + I +G + GP G GKT++A Sbjct: 1 MNYQALYRMFRPQSFQDVVGQEHVTKTLRNAIS----KGKQSHAYIFSGPRGTGKTSIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 + A + P E A + +T DV+ ID + + + ++V Y Sbjct: 57 VFAKAINCLNPQDGEPCNECA--ICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + A L+ ++ +A+ + G R A ++ + F D Sbjct: 175 -FKAIGTEQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAF----GD 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLL--------AVIDKFFGGPVGLDNLAAAIG 291 ++ A VD + + + ++ G + I Sbjct: 230 EHLTLQDALDVTGS--VDEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIY 287 Query: 292 EERETIEDVLE 302 R+TI + Sbjct: 288 FVRDTIMNKTV 298 >UniRef50_C0ZHA0 DNA polymerase III gamma and tau subunits n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHA0_BREBN Length = 565 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 111/312 (35%), Gaps = 31/312 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ V + + ++ +L L GP G GKT+ A Sbjct: 1 MAYTALYRVYRPQTFQDVVGQEHVTTTLRNALRENRLS----HAYLFNGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + P + D ++N DVL ID + + + ++V + Sbjct: 57 IMAKAVNCEQPIDGEPCNQC--DTCRAISNGSVTDVLEIDAASNRGVEEIRDIRDKVKFA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 + Y++ I + E A ++ PP I ATT L + + R Sbjct: 115 PSDVRYKVYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPHKLPATIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + ++ R + G+++ + VA+ A G R A LL + +++ Sbjct: 175 -FHRIPLRVMVDLLQRICQSQGVQVEEQALQLVAKMAEGGARDALSLLDQAISYSK---- 229 Query: 240 GTISADIAAQALDML-----NVDAEGFDYMDR-KLLLAVIDKFFGGPVGLDNLAAAIGEE 293 + A Q + +V A D +++ G L + Sbjct: 230 DEVRASDIMQITGTVAQSYFSVLARHIAENDIAQVMEQFDKVMVQGKDPEQFLHDFLYYY 289 Query: 294 RETIEDVLEPYL 305 R+ + P L Sbjct: 290 RDMLLLKTAPQL 301 >UniRef50_Q6MH32 DNA polymerase III gamma and tau subunits n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH32_BDEBA Length = 621 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 117/333 (35%), Gaps = 39/333 (11%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 V R RP+ + VGQ + + +K +L LL GP G GKT+ A I Sbjct: 18 SYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRL----PHALLFTGPRGTGKTSSARI 73 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYP 128 +A + P + + DV+ ID + + + + V P Sbjct: 74 LAKALRCPNAQNFVPCNDCYS--CNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMP 131 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 + Y++ I + A ++ PP I ATT + + R Sbjct: 132 SSGKYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFD- 190 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 + + G+ D+ VAR+ G+ R + LL +V FA +G Sbjct: 191 FRRISTRSITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFA----NG 246 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-LDNLAAAIGEERETIED 299 ++ + L + + + L A+ID+ + ++ +AAA E +D Sbjct: 247 PLTRASVVEILGLT------DRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQD 300 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRAWNHFGITP 332 +LE +I+ L + +A + Sbjct: 301 LLE--MIRNLLLIKVSEA-----QASQILEMPD 326 >UniRef50_A0KY06 DNA polymerase III, subunits gamma and tau n=5 Tax=Proteobacteria RepID=A0KY06_SHESA Length = 1040 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 106/324 (32%), Gaps = 39/324 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEKGVTASPCGVCGS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ + L + +A+ A G+ R A L + F Sbjct: 175 -LKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL--DNLAAAI--GEERE 295 GT+ + L + D + +L ++ +G+ + A + G + + Sbjct: 230 GTVMLNQVQSMLGSI----------DEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQ 279 Query: 296 TIEDVLEPYLIQQGFLQRTPRGRM 319 + L L Q Q P Sbjct: 280 EVLRSLLELLHQITLTQFAPAAAQ 303 >UniRef50_A4BJR3 DNA polymerase III subunits gamma and tau n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR3_9GAMM Length = 677 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 56/319 (17%), Positives = 109/319 (34%), Gaps = 31/319 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP +E VGQ V + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPGTFDEMVGQVHVLKALVNALDQERLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 ++A + +S P + A + D++ +D + ++E V Y Sbjct: 57 LLAKSLNCEQGVSSKPCGQCAS--CREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRFKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + + +A A+G+ R A L + F Sbjct: 175 -LKNMSREHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIAF----GH 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G ++ A L +++ L+ A++ K G + + + + +T+ Sbjct: 230 GALAEQEVAAMLGTVDLKRV------LNLVRALLQKDADGLLAMVSELDEHTPDYQTLLT 283 Query: 300 VLEPYLIQQGFLQRTPRGR 318 L L + Q P Sbjct: 284 ELMSTLHRVAIAQAVPSAI 302 >UniRef50_C9PPQ1 DNA polymerase III subunit gamma/tau n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPQ1_9PAST Length = 741 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 111/319 (34%), Gaps = 31/319 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ + + +K +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPKTFADVVGQSHILIALSNGLKENRLH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P E + + D++ ID + +++ V Y Sbjct: 57 LFAKGLNCVNGVTAEPCGEC--EHCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + + + ++A+ A+G+ R + L + + + Sbjct: 174 HLKALEQTQIAQHLEFILKQESIPFDFLALEKLAKAAQGSIRDSLSLADQAIAMS----N 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G I+ ++ + L +L D +L + + + A G + + Sbjct: 230 GNITLNVVNEMLGLL------DDNQAIDILYTLQQGNGENMMKIIQAIAEKGSDWDLFLR 283 Query: 300 VLEPYLIQQGFLQRTPRGR 318 + L Q Q P+ R Sbjct: 284 DIAEKLHQIAVKQLLPKDR 302 >UniRef50_Q31I98 DNA polymerase III, tau subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I98_THICR Length = 696 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 115/353 (32%), Gaps = 45/353 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + + V R RPK E VGQ V + + +L L G G+GKTT+A Sbjct: 1 MTDTVLARKWRPKNFSELVGQTHVMQALSNALDQQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I + + TS P + + D++ +D + ++E V Y Sbjct: 57 IFSKALNCEQGITSKPCGVCS--TCRSIDEGRFVDLIEVDAASKTKVEDTRELLENVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PVQGRYKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPHKLPITVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L +P +Q ++ + + + +A+ A G+ R + +L + + Sbjct: 175 -LMRLTLPQIQQHLAYILQQEQVTFEETALAMIAKSADGSARDSLSILDQAIAY----GG 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE-- 292 G + D L +++ L VI + V L + E Sbjct: 230 GKVQYDAVQAMLGLVDQQFTLNILSALANESADELKEVIQQLALMGVDYTALNGQLIEAL 289 Query: 293 ----ERETIEDVLEPYLIQQGFLQRTPRG----R-----MATTRAWNHFGITP 332 + + D+ E LI+ LQ+ R A + P Sbjct: 290 HQMSMLQVLGDLTESSLIEVEMLQKLSEQLSPERIQVLYQIALLAKQDMALAP 342 >UniRef50_C7GFD5 DNA polymerase III, gamma and tau subunit n=9 Tax=Clostridiales RepID=C7GFD5_9FIRM Length = 526 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 110/316 (34%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E+ GQ + + ++ IKA ++ L G G GKTT+A Sbjct: 1 MSYTALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIG----HAYLFCGTRGTGKTTIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + P E + +V+ ID + + + EEV Y Sbjct: 57 IFAKAVNCEHPVDGSPCGECPA--CRAIAAGNSMNVIEIDAASNNGVDNIRQIREEVEYR 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + A ++ PP I ATT A + + R Sbjct: 115 PTEGKYKVYIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + + + +A+ A G+ R A LL + F Sbjct: 175 -FRRISIETISARLMELMEKEQVTVEERAIRYIAKAADGSMRDALSLLDQCIAFYL---G 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ D + L VD E F + R++L G +D + E + + D Sbjct: 231 QDLTYDKVLETLG--AVDTEIFSRLLRQILE---KNVTGAIGVIDEMVIEGRELGQFVND 285 Query: 300 VLEPYLIQQGFLQRTP 315 + ++ L ++ Sbjct: 286 FT--WYLRNLMLVQSS 299 >UniRef50_Q04YY5 Holliday junction ATP-dependent DNA helicase ruvB n=9 Tax=Bacteria RepID=RUVB_LEPBL Length = 341 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 150/308 (48%), Positives = 225/308 (73%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP LL E++GQ +V + + ++++AAK R ALDH+LI GPPGLGKTTLA IV+NE+G Sbjct: 19 LRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGLGKTTLAGIVSNELGTR 78 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 L TS PV+ K DLA +LT++ +++LFIDEIH L +EE+LYPAME+Y +D++IGEG Sbjct: 79 LTITSAPVITKGADLARLLTSMGENEILFIDEIHTLHKKLEEILYPAMENYMIDLVIGEG 138 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 A+ ++I L PFTL+GATTR+G ++ PL+ RFGI RL++Y +++ IV RS+R +G+ Sbjct: 139 VTAQMVQIPLKPFTLVGATTRSGLISEPLKSRFGIQLRLDYYNDEEMKEIVLRSSRILGV 198 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 ++ DD ALE+ +R+R TPRIAN LL+R+RDF+EV+ + ++ + +A + + +D G D Sbjct: 199 KIEDDAALEIGKRSRKTPRIANHLLKRIRDFSEVEGNLSVKKGLCLKAFEKMGIDDLGLD 258 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 MDR++L +ID++ GGPVGL +A +GEE +TIED E ++++ G + RTP GR+AT Sbjct: 259 GMDRQILGCMIDRYKGGPVGLKAIAVVVGEEEKTIEDTYESFMVRIGLINRTPAGRVATE 318 Query: 323 RAWNHFGI 330 +A+ Sbjct: 319 KAYRQLKR 326 >UniRef50_C6XEE5 DNA polymerase III, subunits gamma and tau n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE5_METSD Length = 610 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 111/353 (31%), Gaps = 45/353 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPKL E VGQ V + ++ +L L G G+GKTTLA Sbjct: 1 MSYQVLARKWRPKLFEALVGQEHVVRALTNALEQQRLH----HAYLFTGTRGVGKTTLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P + + D+L +D + + +++ Y Sbjct: 57 ILAKSLNCETGITAHPCGVCSA--CVDIDRGRFVDMLEVDAASNTQVDSMRELLDNAQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + +++ I + A ++ PP I ATT + + R Sbjct: 115 PTVGRFKVYIIDEVHMLSRSAFNAMLKTLEEPPAHVKFILATTDPQKMPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L P + + + ++R A G+ R A LL + + Sbjct: 175 -LRQMSTPAITSHLQEVLAKENIPSDSIALQLISRAANGSMRDALSLLDQAIAY----GG 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE- 293 ++ L ++ + D L+A + D A + + Sbjct: 230 NRVNESEVRAMLGAIDQSYLYGLLDALIAQDGPSLMAQAKSMEERSLSFDTALADLAQLL 289 Query: 294 -----RETIEDVLEPYL----IQQGFLQRTPRGRM-----ATTRAWNHFGITP 332 +T+ + + L + P ++ G+ P Sbjct: 290 HHLAVAQTVPESIPLDLPERTALLDLATKLPADKVQLYYQIALLGRRDLGLAP 342 >UniRef50_Q0HHZ2 DNA polymerase III, subunits gamma and tau n=5 Tax=Gammaproteobacteria RepID=Q0HHZ2_SHESM Length = 1071 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 106/324 (32%), Gaps = 39/324 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEKGVTASPCGVCGS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ + L + +A+ A G+ R A L + F Sbjct: 175 -LKSLTQQEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL--DNLAAAI--GEERE 295 GT+ + L + D + +L ++ +G+ + A + G + + Sbjct: 230 GTVMLNQVQSMLGSI----------DEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQ 279 Query: 296 TIEDVLEPYLIQQGFLQRTPRGRM 319 + L L Q Q P Sbjct: 280 EVLRSLLELLHQITLTQFAPAAAQ 303 >UniRef50_C6CST5 DNA polymerase III, subunits gamma and tau n=4 Tax=Bacillales RepID=C6CST5_PAESJ Length = 590 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 121/336 (36%), Gaps = 35/336 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + RA RP+ ++ VGQ + ++ I+ ++ L GP G GKTT A Sbjct: 1 MSHIALYRAWRPQTFQDMVGQRHIIQTLQNAIREDRVS----HAYLFNGPRGTGKTTAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 ++A + P E D +T DV+ ID I + + ++V Y Sbjct: 57 VLAKAVNCERGPAEEPCNEC--DACRGITAGHIMDVIEIDAASNRGIDEIRDIRDKVRYA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + E A ++ PP I ATT L + + R Sbjct: 115 PSEVRYKVYIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + R G+E +D +AR + G R A LL +V F Sbjct: 175 -FRQVSLEEQSERLFEICRDEGIEAEEDAIAYIARLSEGGMRDAISLLEQVAAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL-DNLAAAIGEERETIE 298 I+ D A + D L A+ D+ + L + L A + +E Sbjct: 230 SRITLDGAVDVTGGMAADQF------YALAEAIRDRNVAAIMPLVEGLTQAGKSADKCME 283 Query: 299 DVLEPYLIQQGFLQRTPRGRM--ATTRAWNHFGITP 332 +++ Y L+ P+G + A G+ Sbjct: 284 NLI-FYFRDLLVLKLAPQGAVTERVVDAERFRGMAD 318 >UniRef50_Q65PK1 DNA polymerase III (Gamma and tau subunits) n=79 Tax=Bacillaceae RepID=Q65PK1_BACLD Length = 566 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 112/317 (35%), Gaps = 33/317 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+L E+ VGQ + ++ + L+ L GP G GKT+ A Sbjct: 1 MSYQALYRVFRPQLFEDVVGQEHITKTLQNAL----LQKKFSHAYLFSGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 + A + S P E + +TN DV+ ID + + + ++V Sbjct: 57 LFAKAVNCERAPVSEPCNECSA--CKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + L++ D +A A G R A LL + F+ Sbjct: 175 -FKRITSQAIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFS----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-LDNLAAAIGEERETIE 298 ++ D A ++ + KL + +K G + L+ L + + IE Sbjct: 230 EELTVDDALLITGAVS------QHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIE 283 Query: 299 DVLEPYLIQQGFLQRTP 315 D++ Y Q P Sbjct: 284 DMI-FYFRDMLLYQTAP 299 >UniRef50_B8CMY6 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8CMY6_SHEPW Length = 946 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 108/331 (32%), Gaps = 49/331 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLHALTNALTQQRLH----HAYLFSGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + + + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEQGVTATPCGQCSA--CVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PSRGRYKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ ++ LE +A+ A G+ R A L + F Sbjct: 175 -LKSLTQDEISDQLTNVLTAESLEFEATALTLLAKAANGSMRDALSLTDQAIAF----GA 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + ++ L + D K ++A+++ V A + + Sbjct: 230 GQVKLELVQTMLGSI----------DEKQVIALLEALAKADV-----MALMQVSAGVLSF 274 Query: 300 VLEP---------YLIQQGFLQRTPRGRMAT 321 EP L Q Q P + Sbjct: 275 GAEPEEVLRSLLELLHQITLTQFAPAAAQMS 305 >UniRef50_A1U128 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=4 Tax=Gammaproteobacteria RepID=A1U128_MARAV Length = 637 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 108/316 (34%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E+ VGQ V + ++ +L L G G+GKTT+ Sbjct: 1 MSYQVLARKWRPRTFEDMVGQEHVLQALIHALEHQRLH----HAYLFTGTRGVGKTTIGR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + T P E D + D++ ID + + + + V Y Sbjct: 57 LLARCLNCETGITPNPCGEC--DSCKEILENRFVDLIEIDAASRTGVDDMRELTDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ + A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + D +AR A G+ R A L + F + Sbjct: 175 -LKRMTPEHIVGHLKHVLTEEQIPFEDPALWLLARAADGSMRDALSLTDQAIAF----GN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++A + L + ++++ A++++ G + N + + I Sbjct: 230 ENLAASDVSNMLGTI------DQRDIQRIVNALVERDGPGLLSEINRISDFAPDYGVILS 283 Query: 300 VLEPYLIQQGFLQRTP 315 + + Q P Sbjct: 284 DMLSLFHRVTMEQVVP 299 >UniRef50_A5VIC2 DNA polymerase III, subunits gamma and tau n=39 Tax=Lactobacillales RepID=A5VIC2_LACRD Length = 611 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 105/311 (33%), Gaps = 27/311 (8%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ V ++ I + L GP G GKT+ A Sbjct: 1 MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAI----ITHQISHAYLFAGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + + P E ++ +TN + +DV+ ID + + + ++ Y Sbjct: 57 IFAKAVNCHHSKDGEPCNEC--EICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P DY++ I + A ++ PP I ATT + + R Sbjct: 115 PTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE---- 235 D + + + +A A G R A +L +V F++ Sbjct: 175 -FRRISAEDAFNRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVK 233 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 + ++ + Q L E + L + D G G + I R+ Sbjct: 234 LDDALLVTGSVTKQLLKK--YFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRD 291 Query: 296 TIEDVLEPYLI 306 + P LI Sbjct: 292 ILLYQESPSLI 302 >UniRef50_A6FBQ8 Hypothetical DNA polymerase III, subunits gamma and tau n=1 Tax=Moritella sp. PE36 RepID=A6FBQ8_9GAMM Length = 814 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 108/325 (33%), Gaps = 31/325 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ VGQ V + + ++ +L L+ G G+GKTT+A Sbjct: 1 MSYQVLARKWRPHNFQQVVGQQHVLTALVNALEQDRLH----HAYLLSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + TS P E + + D+L ID + +++ V Y Sbjct: 57 IFAKSLNCEKGITSTPCGECS--TCVEIDQGCYVDLLEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + +A+ A G+ R A L + Sbjct: 174 HLKCLTTEQISQQLVHILSREHCQYELSALNSIAKAADGSMRDALSLTDQALSH----GA 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + L L+ +LL ++ + +++G + + + Sbjct: 230 GEVLYQTVLDMLGTLDHSHM------LQLLRLIVSGDANKCMAKIAEVSSLGPDFDQLHV 283 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRA 324 L L + Q P + T A Sbjct: 284 ELASLLHRIAMAQILPSSVVDTEHA 308 >UniRef50_P43746 DNA polymerase III subunit gamma/tau n=23 Tax=Pasteurellaceae RepID=DPO3X_HAEIN Length = 688 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 116/318 (36%), Gaps = 33/318 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ + + + +K +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P E + + D++ ID + +++ V Y Sbjct: 57 LFAKGLNCVHGVTATPCGEC--ENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + +++ ++ A ++ PP + ATT L + R Sbjct: 115 PVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + D +++A+ A+G+ R + L + D Sbjct: 174 HLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAM----GD 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFG-GPVGLDNLAAAIGEERETIE 298 ++ ++ + L +L D +L A+ L +A A G+ + + Sbjct: 230 RQVTNNVVSNMLGLL------DDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLG 283 Query: 299 DVLEPYLIQQGFLQRTPR 316 + E L Q +Q P+ Sbjct: 284 ECAE-KLHQIALMQLLPQ 300 >UniRef50_Q8EFG0 DNA polymerase III, gamma and tau subunits n=1 Tax=Shewanella oneidensis RepID=Q8EFG0_SHEON Length = 1002 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 106/324 (32%), Gaps = 39/324 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCETGVTASPCGVCGS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ + L + +A+ A G+ R A L + F Sbjct: 175 -LKSLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG--LDNLAAAI--GEERE 295 GT+ + L + D + +L ++ +G + + A + G + + Sbjct: 230 GTVMLNQVQSMLGSI----------DEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQ 279 Query: 296 TIEDVLEPYLIQQGFLQRTPRGRM 319 + L L Q Q P Sbjct: 280 EVLRSLLELLHQITLTQFAPAAAQ 303 >UniRef50_B8FG14 DNA polymerase III, subunits gamma and tau n=2 Tax=Bacteria RepID=B8FG14_DESAA Length = 706 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 42/323 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ +E V QP + ++ I ++ L + GP G GKTT+A Sbjct: 1 MSYLVLARKYRPQTFDEVVAQPHITETLKNAINQERV----AHALCLSGPRGTGKTTVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A M T P A + DV ID + ++ + E V Y Sbjct: 57 ILAKAMNCVNGPTPEPCGVCAS--CKEIAASNAVDVFEIDGASNNSVEQVRELRENVQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA+ +Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PALGNYKVYIIDEVHMLSQAAFNALLKTLEEPPPHVMFILATTESHKIPVTILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + D+ +++ A + + VARR+ G R A LL +V ++ Sbjct: 175 -FKRISLDDIVGHLAKLAGLENFTIEEQSLWAVARRSGGCMRDALSLLDQVMAYST---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPV-----GLDNLAAAIGEER 294 G S + L + RK L A+ V +D L A + + Sbjct: 230 GEASFEKVLDILGVAG----------RKSLFALAQALLDRDVPACLTAVDQLYARGYDLK 279 Query: 295 ETIEDVLEPYLIQQGFLQRTPRG 317 + + D+L+ + + +T R Sbjct: 280 QVMADLLDHL--RDLTVVKTVRD 300 >UniRef50_B0K0Z9 DNA polymerase III, subunits gamma and tau n=9 Tax=Thermoanaerobacter RepID=B0K0Z9_THEPX Length = 518 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 27/304 (8%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RPK +E VGQ + ++ IK K+ L G G GKT++A I Sbjct: 2 YQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIG----HAYLFTGTRGTGKTSVAKIF 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + T P ++ + N DVL ID ++ + + E V+Y P+ Sbjct: 58 AKAVNCLNNTDGEPCNSC--EICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPS 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I ATT L + R Sbjct: 116 QAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + R G+++ + G +A G+ R A LL + + +G Sbjct: 175 KRIPTRLIAQNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASY----KEGL 230 Query: 242 ISADIAAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 I+ + + L + N V DYM+ K + A + + ++ + + D Sbjct: 231 ITYEDVCEMLGVANDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRD 290 Query: 300 VLEP 303 ++ Sbjct: 291 MVLY 294 >UniRef50_Q3IKN4 Putative DnaX, DNA polymerase III, gamma/tau subunits n=2 Tax=Alteromonadales RepID=Q3IKN4_PSEHT Length = 842 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 31/274 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E VGQ V+ + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + + ++ P + + + D+L ID + +++ V Y Sbjct: 57 IFAKSLNCDEGISANPCGQCSS--CKDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L +++ + L DD +A+ A G+ R A L + + + Sbjct: 175 -LNALSQSEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIA----QTN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVI 273 G I+ L ++ + + LL A++ Sbjct: 230 GDINNQAVQTMLGLM------DTHYSQSLLAALL 257 >UniRef50_B9Y576 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y576_9FIRM Length = 613 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 104/298 (34%), Gaps = 31/298 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP EE VGQ + + ++ +K K+ L GP G GKTT+A Sbjct: 1 MSYKALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKI----AHAYLFCGPRGTGKTTIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 ++A + + P + + D++ ID + + ++E+V Y Sbjct: 57 LLAKAVNCE-DQQNAPCNQCRS--CLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYA 113 Query: 129 AME-DYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 +E Y++ I+ A ++ PP I ATT + + R Sbjct: 114 PLEGRYKVYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYD 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 ++ V +E D+ VA+ A G R A ++ + +A+ Sbjct: 174 -FSKVGQNEIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQ---- 228 Query: 240 GTISADIAAQALDMLNVDAEG-----FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 I+A + + V + + LL I V + L + + E Sbjct: 229 NHITAAHVNEIYGITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIE 286 >UniRef50_B0VJV5 DNA polymerase III, gamma/tau subunits n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJV5_9BACT Length = 533 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 110/304 (36%), Gaps = 30/304 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ +E Q + ++ I ++ L GP G+GKT+LA Sbjct: 1 MSYIVLARKYRPQNFKEVYAQEHITEILQSAIATNRI----AHAYLFTGPRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYP 128 I+A + T+ P + +T DV+ ID + + + E+LYP Sbjct: 57 ILAKSLNCVNGPTTTPCNACSN--CLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYP 114 Query: 129 A-MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 A +Y++ I + A ++ PP I ATT + + R Sbjct: 115 ASSSNYKIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + + G+++ + +AR+A G R A L+ + + Sbjct: 175 -FKRIPIASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCL---- 229 Query: 240 GTISADIAAQALDMLN--VDAEGFD---YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 I+ D Q M+ V + D + L+ + F + L A + E Sbjct: 230 NNITIDKVRQIFGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFV 289 Query: 295 ETIE 298 + Sbjct: 290 RILI 293 >UniRef50_C2H810 DNA-directed DNA polymerase n=16 Tax=Lactobacillales RepID=C2H810_ENTFC Length = 581 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 110/318 (34%), Gaps = 33/318 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R R + E+ VGQ V ++ I + L GP G GKT+ A Sbjct: 1 MAYQALYRVWRSQRFEDIVGQKAVTQTLKNAI----VSHKTSHAYLFTGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + P E ++ +T DV+ ID + + + + Y Sbjct: 57 IFAKAINCPNSKDGEPCNEC--EMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + A ++ P I ATT + + + R Sbjct: 115 PTKAAYKVYIIDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + D+ + + + +AR A G R A +L + F+E Sbjct: 175 -FKRINTADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSE---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDK-FFGGPVGLDNLAAAIGEERETIE 298 GTI+ D A Q L D M L A + K L+ + AA E R +E Sbjct: 230 GTITLDDAMQVTGSLT------DEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLE 283 Query: 299 DVLEPYLIQQGFLQRTPR 316 D+L+ Y Q+ P Sbjct: 284 DMLQ-YCRDLLMYQQAPN 300 >UniRef50_C5S1I5 DNA polymerase III subunits gamma and tau n=2 Tax=Actinobacillus minor RepID=C5S1I5_9PAST Length = 698 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 113/313 (36%), Gaps = 31/313 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E VGQ V S +E ++ +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P E A + D++ ID + +++ V Y Sbjct: 57 LFAKGLNCETGITATPCGECAN--CKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + + + + ++A+ A G+ R + L + + Sbjct: 174 HLRALDQTQIAHHLEFILKAEQIPYETAAIEKLAKAAEGSIRDSLSLTDQAIAVT----N 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ +Q L ++ D+ +L++A+ + + + A G + + + Sbjct: 230 ANVTLSAVSQMLGLI------DDHQPLELIMALANADGEKVMAVIQNVAEKGVDWNQLLN 283 Query: 300 VLEPYLIQQGFLQ 312 + L Q LQ Sbjct: 284 DVAEVLHQIAMLQ 296 >UniRef50_D0ZED4 DNA polymerase III, subunits gamma and tau n=2 Tax=Enterobacteriaceae RepID=D0ZED4_EDWTE Length = 689 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 109/318 (34%), Gaps = 31/318 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + VGQ V + + + ++ L G G+GKT++A Sbjct: 38 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIH----HAYLFSGTRGVGKTSIAR 93 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 ++A + T+ P D + D+L ID + +++ V Y Sbjct: 94 LLAKGLNCETGITATPCGVC--DNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYA 151 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 152 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQF- 210 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L ++ + + A L +AR A G+ R A L + Sbjct: 211 HLRALDHEQIRAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAM----GQ 266 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G I+AD +Q L L D L+ A+ + AA G + E + Sbjct: 267 GQITADAVSQMLGTL------DDEQPLALIEALTAADGTLVMARVEQAAGRGVDWENLLV 320 Query: 300 VLEPYLIQQGFLQRTPRG 317 + L + LQ P Sbjct: 321 EMLALLHRVAMLQLLPSA 338 >UniRef50_Q7UPG4 Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Rhodopirellula baltica RepID=RUVB_RHOBA Length = 366 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 141/314 (44%), Positives = 201/314 (64%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP+ + E VGQ V ++ I I AA++RG+ L H+L GPPGLGKTT A ++ +EM Sbjct: 51 LRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSEMKTT 110 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 ++ +G L+ DL LTN+ VLFIDEIHR+ +EE LY AMED+++DI++GEG Sbjct: 111 VQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRIDIVLGEG 170 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 AR++ + L PFTLIGATTRAG LT+PLRDRF I + L +Y +L IV R+++ + + Sbjct: 171 VNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRNSKKLNI 230 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E+ A +A R+R TPR+AN L VRD+A+ K G + A + ALDM+ +D G D Sbjct: 231 EVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGIDHLGLD 290 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 DR L ++ F GGP GLD +A + +T+ED +EP+L++ L RT RGR+AT Sbjct: 291 KQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGRLATP 350 Query: 323 RAWNHFGITPPEMP 336 +A+ H P+ P Sbjct: 351 KAFEHMKRQMPDRP 364 >UniRef50_A8W2Q1 DNA-directed DNA polymerase n=4 Tax=Bacillus RepID=A8W2Q1_9BACI Length = 600 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 110/317 (34%), Gaps = 33/317 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP++L++ VGQ + + + L+ L GP G GKT+ A Sbjct: 1 MAYQALYRVWRPQVLKDVVGQEHITRTLRNAL----LQQKLSHAYLFSGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + P + + + DV+ ID + + + ++V + Sbjct: 57 IIAKAVNCEQAPVEEPCNTCS--TCTGIQDGSIVDVIEIDAASNNGVDEIRDIRDKVKFA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSGASYKVYIIDEVHMLTTGAFNALLKTLEEPPRHVIFILATTEPHKIPLTIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + L + D +AR + G R A LL + +A D Sbjct: 175 -FKRITAHTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYA----D 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVID-KFFGGPVGLDNLAAAIGEERETIE 298 +++ D + + D + ++ A++D + G +D L + + +E Sbjct: 230 TSVTLDDVLSIIGAASQD------LMYDVMEALLDQQVADGLTAIDRLMSDGKDPGRFME 283 Query: 299 DVLEPYLIQQGFLQRTP 315 D + +Q P Sbjct: 284 DFI-FLTRDLLMVQAAP 299 >UniRef50_A5WFF8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=2 Tax=Psychrobacter RepID=A5WFF8_PSYWF Length = 751 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 116/341 (34%), Gaps = 48/341 (14%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 + V R RPK E VGQ V + I +L L G G+GKTT+A Sbjct: 2 SQQYQVLARKYRPKNFHELVGQSHVSKALINAIDHNRLH----HAYLFTGTRGVGKTTIA 57 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY 127 I++ + TS P + + D++ ID + +++ V Y Sbjct: 58 RILSKCLNCETGVTSTPCGVCSS--CVAIDQGRFIDLIEIDAASRTKVEDTRELIDNVPY 115 Query: 128 -PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 P Y++ ++ A ++ PP + ATT L + R Sbjct: 116 APTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQF 175 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 L L ++ ++ + ++A A+G+ R A L + F Sbjct: 176 V-LRPLPQQALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAF----G 230 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP----VGLDNLAAAIGEER 294 G ++ + L +++ L+ ++D + G ++ + A + + Sbjct: 231 QGRLTDETVNDMLGLID---------SADLISLLLDIYQGNAPALSAHIEQMRAQL-VDA 280 Query: 295 ETIEDVLEPYLIQQGFLQRTP---------RGRMATTRAWN 326 ++ D L L Q +Q P + + T A Sbjct: 281 GSMFDGLADLLHQIAMVQLLPNVSLNVNDLQAQQITALAAQ 321 >UniRef50_Q12LL5 DNA polymerase III, subunits gamma and tau n=2 Tax=Shewanella RepID=Q12LL5_SHEDO Length = 921 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 101/324 (31%), Gaps = 39/324 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPAKFEQMVGQSHVLLALTNALSQQRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCETGVTASPCGTCSS--CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ + L +A+ A G+ R A L + F Sbjct: 175 -LKSLSQDEISQQLEFILGQEQLPFESQALTLLAKAANGSMRDALSLTDQAIAF----GS 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG--LDNLAAAIGEERETI 297 G + L + D + ++ ++ + + A + + Sbjct: 230 GQVMLTQVQTMLGSI----------DERQVIGLLKSLCDADIAHLMQTTAQVLSFGADAD 279 Query: 298 E--DVLEPYLIQQGFLQRTPRGRM 319 E L L Q Q P Sbjct: 280 EVLRSLLELLHQITLSQFAPAAAQ 303 >UniRef50_B5Y7S3 DNA polymerase III, gamma and tau subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S3_COPPD Length = 522 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 108/299 (36%), Gaps = 41/299 (13%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP+ EE VGQ V + + K+ L GP G GKT+ A I A Sbjct: 3 LYRKYRPQTFEEVVGQSHVTEILTKALDNQKIS----HAYLFAGPKGSGKTSCARIFAKG 58 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + TS P E + ++ DV+ ID + + + E V Y PA Sbjct: 59 LNCETGITSKPCNEC--ESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSR 116 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R R + Sbjct: 117 YKVYIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRF-RFKKL 175 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ I+ + G + +A + G R A LL ++ V +G +S Sbjct: 176 TSDEVFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQI----SVVDEGKVSI 231 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 A L+++ D +L + F ++ LA E +E +EP Sbjct: 232 KTARFLLNVVE---------DEVILDLLKTAFADMDEAVERLA-------ELMESGVEP 274 >UniRef50_Q2SIX1 DNA polymerase III, gamma/tau subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX1_HAHCH Length = 735 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 101/299 (33%), Gaps = 30/299 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E GQ V + + +L L G G+GKTT+A Sbjct: 1 MAYQVLARKWRPGNFAEMAGQEHVLKALTNALNQDRLH----HAYLFTGTRGVGKTTVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + ++ P E + + D++ ID + + +++ V Y Sbjct: 57 IFAKCLNCEQGVSAIPCGECG--VCREIAEGRFVDLIEIDAASRTKVEDMRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRSRYKIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + + + E+AR A G+ R A L + F D Sbjct: 175 -LKNLSPQRIVSHLTHVLQAENVPAEEAALWELARAAEGSMRDAMSLTDQAIAF----GD 229 Query: 240 GTISADIAAQALDMLN----VDAEG-FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 G + A + L + +D D +LA ++ + A+ E Sbjct: 230 GKLEAKDVIEMLGTIEKHVVIDLLRTIAAQDCAAMLAQVNHMAQFAPDYAYVLQALAEL 288 >UniRef50_Q13Z80 DNA-directed DNA polymerase n=48 Tax=Burkholderiales RepID=Q13Z80_BURXL Length = 957 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 101/316 (31%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK VGQ V + + +L L G G+GKTTL+ Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLH----HAYLFTGTRGVGKTTLSR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + TS P + D + +D + ++ ++E +Y Sbjct: 57 IFAKALNCETGVTSTPCGVCRA--CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA 114 Query: 129 AME-DYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 ++ +++ ++ A ++ PP I ATT + + R Sbjct: 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + +AR A G+ R A L + ++ Sbjct: 175 -LKQMPAGHIVSHLEHILGEEKVPYDVQALRLLARAADGSMRDALSLTDQAIAYSA---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ + L L +LL A+ D + + + A T Sbjct: 230 NQVNEEAVRGMLGAL------DQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQ 283 Query: 300 VLEPYLIQQGFLQRTP 315 L L + + Q P Sbjct: 284 DLASLLHRIAWAQFAP 299 >UniRef50_D0KYU5 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYU5_HALNC Length = 591 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 110/313 (35%), Gaps = 40/313 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK E VGQ V + + ++L L G G+GKTT+A Sbjct: 1 MSYLVLARKWRPKSFAEMVGQGHVLQALTNALDQSRLH----HAYLFTGTRGVGKTTVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + +S P + + D++ +D + ++E V Y Sbjct: 57 IFAKALNCEHGISSTPCGVCSA--CVEIDQGRFVDLIEVDAASRTGVDDTRDLLENVAYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ + A ++ PP + ATT L + R Sbjct: 115 PVRGRFKIYLIDEVHMFSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + +Q ++ + + +A A G+ R A LL + F Sbjct: 175 -LRALPLSQIQQHLADVLQKENIAFEPAALHLIAEAANGSMRDALSLLDQAIAFT----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + +Q L + D +++ +ID + D L A + E ++ Sbjct: 230 GKLDTVQVSQILGLS----------DHQIIWDMIDALYQ--QSADRLFALVDEA---LDR 274 Query: 300 VLEPYLIQQGFLQ 312 +EP ++ F++ Sbjct: 275 AVEPAILLAQFIE 287 >UniRef50_B1YGC8 DNA polymerase III, subunits gamma and tau n=2 Tax=Exiguobacterium RepID=B1YGC8_EXIS2 Length = 561 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 108/310 (34%), Gaps = 31/310 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ +E VGQ + ++ + + L GP G GKT+LA Sbjct: 1 MAYQALYRVYRPQRFDEVVGQAHITRTIQNAL----MEERMSHAYLFSGPRGTGKTSLAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + + P E +T DV ID + + + ++V YP Sbjct: 57 IIAKAINCEQAPVNEPCNECP--TCRAITEGSSPDVFEIDAASNNGVDEIREIRDKVKYP 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PSEAAYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++V L + + ++ +AR A G R A LL + F+ + Sbjct: 175 V-KRHEVDQLMERMQYILSDQTIGYTETALRLIARAADGGMRDALSLLDQAVAFS----N 229 Query: 240 GTISADIAAQALD------MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 G ++ D + +L V + +LL + G + + Sbjct: 230 GDLTDDAVLEVTGAVEDEALLAVANALQAHQVDQLLQTLEKMQRAGKDLKRFVEDLVFFY 289 Query: 294 RETIEDVLEP 303 R+T+ P Sbjct: 290 RDTLLLKTSP 299 >UniRef50_C7RB01 DNA polymerase III, subunits gamma and tau n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB01_KANKD Length = 773 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 101/291 (34%), Gaps = 37/291 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK +E GQ V + I++ +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPKNFDELQGQEHVSRALVNAIESGRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVN-LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY 127 I++ + TS P E + D++ +D + ++E V Y Sbjct: 57 ILSKCLNCETNGLTSKPCGECGS--CVEIDEGRFVDLIEVDAASRTKVDDTRELLENVQY 114 Query: 128 -PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 KPTRGRYKVYLIDEVHMLSNSSFNALLKTLEEPPEHVIFLLATTDPQKLPVTVLSRCLQF 174 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 L+ + + ++ + ++ ++R A G+ R A LL + F Sbjct: 175 -HLKHMEEQTISKHLAYILQQESIDFETPALELISRSAEGSMRDALSLLDQAIAF----G 229 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 G + + L + D + ++ +++ + + A Sbjct: 230 QGKVQEEDIRTMLGTI----------DHQFMVKLLEALANKD-SAEAIKAV 269 >UniRef50_Q98PR1 Holliday junction ATP-dependent DNA helicase ruvB n=3 Tax=Mycoplasma RepID=RUVB_MYCPU Length = 315 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 186/308 (60%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 + IRPK ++VGQ +++ +++ I +A+++ LDH+L +G PG GKT+LA+I++N + Sbjct: 5 QEIRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLN 64 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 ++ G +L+K D+ + ++E +D++F+DEIH ++ +EE+LY +ED+ +DI+IG Sbjct: 65 SRIKYAQGNLLDKKTDILTLFASVEENDIIFVDEIHAINKNIEELLYSILEDFVVDIVIG 124 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 ++ ++++L PFT IGATT+ ++ PLRDRFG++ ++ YQV D++ I+ +++ + Sbjct: 125 VESNSKIMRLNLKPFTFIGATTQINRISKPLRDRFGLIGQISNYQVEDIEKIIKNNSKKL 184 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 +++ + +A ++ PR+A LL+R +DF + I + + L L + G Sbjct: 185 NIQIDEKATNLIALYSQNIPRLAINLLKRTKDFCIYEECQIIDYKLVNKTLKQLGIYENG 244 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 + K L ++ + F+ V LD + + ++ETI +EP LI + +TPRGR Sbjct: 245 LNESQVKYLRSLSETFYKKAVSLDLIVGFLSLQKETIISEIEPLLISNNLIVKTPRGRKI 304 Query: 321 TTRAWNHF 328 T + ++ Sbjct: 305 TQKGISYL 312 >UniRef50_B3JMX9 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JMX9_9BACE Length = 623 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 113/323 (34%), Gaps = 31/323 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V+ R RP + VGQ + + ++ I KL L GP G+GKTT A I Sbjct: 4 YIVSARKYRPATFDTVVGQRALTTTLKNAIANQKL----AHAYLFCGPRGVGKTTCARIF 59 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA- 129 A + T G + + +++ +D + + ++E+V P Sbjct: 60 AKTINCLHPTADGEACNEC-ESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQ 118 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + A ++ PP I ATT + + R I Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYD-F 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V D + AR +E + +A++A G R A + +V F +G Sbjct: 178 NRISVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFT----NGH 233 Query: 242 ISADIAAQALDMLNVDAE------GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 I+ + L++L+ + + LL + G G + R+ Sbjct: 234 ITYQSVIENLNVLDYEYYFKLTDAFLENRVSDCLLTFNEVLKKGFDGNHFITGLTSHFRD 293 Query: 296 TIEDVLEPYLIQQGFLQRTPRGR 318 + + L Q + + R R Sbjct: 294 LLVSRDDETL-QLLEVGASIRDR 315 >UniRef50_D2RLY2 DNA polymerase III, subunits gamma and tau n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLY2_ACIFE Length = 671 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 116/316 (36%), Gaps = 34/316 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ VGQ ++ + ++ ++ L GP G GKT+ A Sbjct: 1 MAYVALYRTWRPQDFDDLVGQAPIKKALTNALETGRIS----HAYLFAGPRGTGKTSTAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + T+ P + + +T DV+ ID I + + E+V + Sbjct: 57 ILAKALNCEKGPTAHPCNQCSN--CREITEGTCGDVVEIDAASNRGIDEIRKLREQVYFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + + A ++ PP I ATT + + + R Sbjct: 115 PTSCRYKVYIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V ++ + + A+ ++ + +A +A G R A LL + A Sbjct: 175 -FRRATVDEIAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMAS---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAV-IDKFFGGPVGLDNLAAAIGEERETIE 298 ++A+ Q L ++ + R+L+ + G L L E + + Sbjct: 230 -PVTAETVRQVLGLVGREKL------RELVTRIGQKNLSGALDALGQLLEQGKEMEQILA 282 Query: 299 DVLEPYLIQQGFLQRT 314 ++LE Y Q Sbjct: 283 ELLE-YFRALLLYQAD 297 >UniRef50_Q47HW9 AAA ATPase, central region n=3 Tax=Betaproteobacteria RepID=Q47HW9_DECAR Length = 537 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 27/296 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ VGQ V + + +L L G G+GKTTLA Sbjct: 1 MSYQVLARKWRPRNFSTLVGQEHVVRALTHALSEQRLH----HAYLFTGTRGVGKTTLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P + + + D+L +D + + ++E +Y Sbjct: 57 ILAKSLNCETGITATPCGTCSA--CQEIDSGRFVDLLEVDAATNTRVDEMRQLLENAVYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP I ATT + + R Sbjct: 115 PTRGRFKVYVIDEVHMLSNSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V + + + G+ VAR A G+ R A LL + Sbjct: 175 -LKQMPVLAITGHLGHILQAEGIPFDQPALALVARSAAGSMRDALSLLDQAIAH----GA 229 Query: 240 GTISADIAAQALDMLNVDAEG--FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 G + L ++ D + + A++ + + +AA+ E Sbjct: 230 GRVEEAQVRSMLGTVDQDYLFTILEALHGAEPSALLQVAADLGIRSLSFSAALQEL 285 >UniRef50_A0LM15 DNA polymerase III, subunits gamma and tau n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM15_SYNFM Length = 602 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 25/256 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ EE VGQP V ++ I+++++ L G G+GKT++A Sbjct: 1 MSYLVIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRI----AHSYLFTGARGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + T P + + DVL ID I + + E V Y Sbjct: 57 ILAKALNCETGVTPTPCNVCSN--CTEIRQGNAVDVLEIDGASNRGIDSVRELRETVRYR 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ I + E A ++ PP I ATT + + + R Sbjct: 115 PAKSRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + A + +S+ +AR A G+ R A LL ++ F+ Sbjct: 175 -FRRIPSHMLVDHLRHIAAQEDVALSEGVLYAIAREADGSMRDAQSLLEQMLSFSRDG-- 231 Query: 240 GTISADIAAQALDMLN 255 +S + L +++ Sbjct: 232 --LSDEEVLDVLGVID 245 >UniRef50_A8FAE4 DNA-directed DNA polymerase III gamma/tau subunits n=3 Tax=Bacillus RepID=A8FAE4_BACP2 Length = 570 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 106/312 (33%), Gaps = 31/312 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP++ E+ VGQ + ++ + L+ L GP G GKT+ A Sbjct: 1 MSYQALYRVFRPQVFEDVVGQEHITKTLQNAL----LQKKFSHAYLFSGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I A + S P E D +TN DV+ ID + + + ++V Sbjct: 57 IFAKAVNCEKSPVSEPCNEC--DACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPPF--TLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + D+ + + L + + +A A G R A LL + F+ Sbjct: 175 -FKRITTKDIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFS----G 229 Query: 240 GTISADIAAQALDMLN---VDAEGFDYMDRKL---LLAVIDKFFGGPVGLDNLAAAIGEE 293 ++ D A ++ + D+ + L + + G + I Sbjct: 230 EQLTIDDALLITGAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYF 289 Query: 294 RETIEDVLEPYL 305 R+ + P L Sbjct: 290 RDMLLYKTAPDL 301 >UniRef50_B1GZS6 DNA polymerase III subunit gamma/tau n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZS6_UNCTG Length = 531 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 30/303 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ +E VGQ + ++ I ++ L GP G GKTT+A Sbjct: 1 MAYLVLARKFRPQNFDEVVGQEHISQTLKNSISEKRI----AHAYLFSGPRGCGKTTMAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + T P + ++ DVL ID I + + E V + Sbjct: 57 ILAKALNCKNGPTIKPCGVC--ENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFS 114 Query: 129 -AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 A Y++ I + + A ++ PP I ATT + + R Sbjct: 115 TASSKYKIYIIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRY- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 R + ++ + + G E+ D+ V + G+ R A LL + + Sbjct: 174 RFKLISGAEMVCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVS----SNT 229 Query: 240 GTISADIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 G I+ D L +L D + D +L ++ + + + A + E Sbjct: 230 GRITGDYMRGLLGLLPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHL 289 Query: 295 ETI 297 + Sbjct: 290 RNV 292 >UniRef50_B8FY14 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfitobacterium hafniense RepID=B8FY14_DESHD Length = 554 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 111/332 (33%), Gaps = 32/332 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK ++ VGQ V + + ++ L GP G GKTT A Sbjct: 1 MAYLALYREWRPKNFKDMVGQDHVTKTLTNAL----MQSKVAHAYLFSGPRGTGKTTTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 ++A + R P + A + +V ID I + + ++V Sbjct: 57 VLAKALNCEHREGVEPCNQCA--FCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLS 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 A E Y++ I + E A ++ PP I ATT + + R + Sbjct: 115 AGESKYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFE 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + + +G ++ + +A+++ G R A +L + D Sbjct: 175 -FHRIPLEQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL-----D 228 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + + Q L M+ + +L+ ++ + +G G + I Sbjct: 229 GKLGVEQVYQVLGMVG------EEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIR 282 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRAWNHFGIT 331 L Y+ Q T H Sbjct: 283 ELLDYMRQALLYASTQAFPQVAPHLREHLAYQ 314 >UniRef50_A1SX03 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Psychromonas RepID=A1SX03_PSYIN Length = 774 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 102/318 (32%), Gaps = 33/318 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP +E VGQ V + + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPGNFQEVVGQQHVLTALSNSLAQNRLH----HAYLFSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P + D+L ID + +++ V Y Sbjct: 57 ILAKSLNCEKGVTATPCGACV--HCQAIDQGRFVDLLEIDAASRTKVDDTREMLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PAQGRYKVYLIDEVHMLSKHSFNALLKTLEEPPEYVKFLLATTDPQKLPITVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ +++ ++ +A A G+ R A L + F Sbjct: 174 HLKAILPQEIETQLAYILNHEQATFEHAALTVIATAAEGSMRDALSLTDQALAF----GS 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA-IGEERETIE 298 G I+ + L + D LL I V L +G + + Sbjct: 230 GHIAYQSVLKMLGSI-------DNNHLHYLLHFIASGNVSKVFLKIDEFVHLGADFAMLH 282 Query: 299 DVLEPYLIQQGFLQRTPR 316 L + Q P+ Sbjct: 283 QTLASLCHEIALSQMQPK 300 >UniRef50_B0VRL4 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=B0VRL4_ACIBS Length = 682 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 105/315 (33%), Gaps = 31/315 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ E VGQ V + +++ +L L G G+GKTT+A I+ Sbjct: 2 YQVLARKYRPRNFNELVGQNHVSRALSSALESGRLH----HAYLFTGTRGVGKTTIARIL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + TS P A + D++ ID + +++ V Y P Sbjct: 58 AKCLNCETGVTSTPCEVCA--TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT 115 Query: 130 MEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 +++ ++ A ++ PP + ATT L + R L Sbjct: 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQF-TL 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V ++ + + D ++A A+G+ R A L + + G Sbjct: 175 RPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY----GQGA 230 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 + + L ++ + L+LAV L + + D L Sbjct: 231 VHHQDVKEMLGLI------DRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQL 284 Query: 302 EPYLIQQGFLQRTPR 316 L + LQ P Sbjct: 285 ISTLHELALLQYLPE 299 >UniRef50_B8KYG2 DNA polymerase III, gamma and tau subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KYG2_9GAMM Length = 672 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 116/320 (36%), Gaps = 36/320 (11%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 G + V R RP +E VGQ V + + +L L G G+GK Sbjct: 79 DTGKRMGYQVLARKWRPGNFQEMVGQQHVLRALVNALDNDRLH----HAYLFTGTRGVGK 134 Query: 69 TTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVE 123 TT+A I+A + + +S P D + D+L +D + ++E Sbjct: 135 TTVARILAKCLNCDQGVSSTPCGTC--DSCLEIAEGRSVDLLEVDAASRTKVEDTRELLE 192 Query: 124 EVLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 VLY P +++ ++ G A ++ PP + ATT L + + R Sbjct: 193 NVLYAPTRSRFKIYLIDEVHMLSGHSFNALLKTLEEPPPHAKFLLATTDPQKLPATVLSR 252 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L+ ++ + + + + +AR A G+ R A L + F Sbjct: 253 CLQFN-LKNMVPEEIVAHLGKVLEEESVAFDNGSLALLARAAEGSMRDALSLTDQAIGF- 310 Query: 235 EVKHDGTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGL----DN 285 DG ++ L ++ + D K LLAVI++ D+ Sbjct: 311 ---GDGGLAESDVRAMLGTVDRARVLDVLDAILDNDPKTLLAVIEQIASHAPDYVATLDD 367 Query: 286 LAAAIGEE--RETIEDVLEP 303 LA+ + + + + D +P Sbjct: 368 LASVLHQVTIAQWVPDAADP 387 >UniRef50_A6VMZ2 DNA polymerase III, subunits gamma and tau n=3 Tax=Pasteurellaceae RepID=A6VMZ2_ACTSZ Length = 699 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 113/318 (35%), Gaps = 33/318 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + +GQ + + + +K +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPQNFHQVIGQEHILTALANGLKENRLH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 ++A + T+ P E + + N D++ ID + +++ V Y Sbjct: 57 LLAKGLNCIHGVTAEPCGEC--EHCKAIENGNFIDLIEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PVQGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + ++A+ A+G+ R + L + + Sbjct: 174 HLKALSQQQIAQHLANILTQEKIPFEPTALGKIAKAAQGSVRDSLSLTDQAIAMSNAD-- 231 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG-PVGLDNLAAAIGEERETIE 298 I D+ L +L D ++L A+ G+ +A + E + Sbjct: 232 --IRVDVVNIMLGLL------DDNQPIEILYALHQGNGEKLMQGIQAVADNGADWDELLI 283 Query: 299 DVLEPYLIQQGFLQRTPR 316 +V E L Q LQ P Sbjct: 284 EVGEA-LHQIAMLQLLPN 300 >UniRef50_C4Z4W2 DNA polymerase n=3 Tax=Clostridiales RepID=C4Z4W2_EUBE2 Length = 561 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 107/324 (33%), Gaps = 41/324 (12%) Query: 13 TLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLA 72 T+ R RP + GQ + + + I A ++ L G G GKT++A Sbjct: 16 TMSYQALYRKWRPDNFNDVKGQDTIVTTLRNQINADRIG----HAYLFCGTRGTGKTSVA 71 Query: 73 NIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY 127 I A + P E + +V+ ID + + + EEV Y Sbjct: 72 KIFAKAVNCEHPVDGNPCGECP--TCKAIAAGTSMNVIEIDAASNNGVDNIRQIREEVQY 129 Query: 128 PAME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 E +++ I + A ++ PP I ATT + + R Sbjct: 130 SPTEGRFKVYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRY 189 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 + + +S + GL + D VA+ A G+ R A LL + F Sbjct: 190 D-FHRITIETIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYL--- 245 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL-----DNLAAAIGEE 293 + + L + D + ++ G V + ++L + Sbjct: 246 GKDLKYENVLDVLGAV----------DTAVFSKMLSTILSGDVAVCMSLMEDLIMQGRDL 295 Query: 294 RETIEDVLEPYLIQQGFLQRTPRG 317 + + D + + ++ L +T + Sbjct: 296 SQFVTDFI--WYLRNLLLIKTTKD 317 >UniRef50_C6ITP2 DNA polymerase III subunit gamma/tau n=10 Tax=Bacteroidales RepID=C6ITP2_9BACE Length = 619 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 64/313 (20%), Positives = 106/313 (33%), Gaps = 33/313 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V+ R RP E VGQ + + ++ I KL L GP G+GKTT A I Sbjct: 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKL----AHAYLFCGPRGVGKTTCARIF 59 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA- 129 A + TT G + + +++ +D + + +VE+V P Sbjct: 60 AKTINCMTPTTDGEACNEC-ESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQ 118 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + A ++ PP I ATT + + R I Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYD-F 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V D +S A + + +A +A G R A + +V F G Sbjct: 178 NRISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFT----GGN 233 Query: 242 ISADIAAQALDMLNVDAE------GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 I+ + L++L+ + + LL D G G + R+ Sbjct: 234 ITYKSVIENLNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRD 293 Query: 296 TIED---VLEPYL 305 + P L Sbjct: 294 LLVSKDAATLPLL 306 >UniRef50_B0RYK4 DNA polymerase III tau and gamma subunits n=20 Tax=Xanthomonadaceae RepID=B0RYK4_XANCB Length = 752 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 64/325 (19%), Positives = 114/325 (35%), Gaps = 41/325 (12%) Query: 10 AGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKT 69 AG + V R RPK E VGQ V + + + ++ L G G+GKT Sbjct: 96 AGFPMSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVH----HAFLFTGTRGVGKT 151 Query: 70 TLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE 124 T+A I A + T++ P + D+L ID + + V+E Sbjct: 152 TIARIFAKSLNCETGTSADPCGTCPA--CLDIDAGRYIDLLEIDAASNTGVDDVREVIEN 209 Query: 125 VLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRF 175 Y P+ +++ ++ A ++ PP + ATT L + R Sbjct: 210 AQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 269 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 L+ +Q ++R +E +++++ A G+ R LL + +A Sbjct: 270 LQFN-LKRLDEDQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYA- 327 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-----LDNLAAAI 290 G + D+ L + DR + A++ G + LA Sbjct: 328 ---GGALREDVVRTMLGTV----------DRTQVGAMLQALSDGDGAQLLKVVAALAEFS 374 Query: 291 GEERETIEDVLEPYLIQQGFLQRTP 315 + +E + E L + Q P Sbjct: 375 PDWSGVLEALAEA-LHRIQVQQLVP 398 >UniRef50_P09122 DNA polymerase III subunit gamma/tau n=31 Tax=Bacillales RepID=DPO3X_BACSU Length = 563 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 111/318 (34%), Gaps = 32/318 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E+ VGQ + ++ + L+ L GP G GKT+ A Sbjct: 1 MSYQALYRVFRPQRFEDVVGQEHITKTLQNAL----LQKKFSHAYLFSGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I A + P E A +TN DV+ ID + + + ++V Sbjct: 57 IFAKAVNCEHAPVDEPCNECAA--CKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + R Sbjct: 115 PSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + +++ L++ + +A A G R A LL + F+ Sbjct: 175 -FKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILK 233 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 A + A+ L + D+ + A+ L+ L + + IED Sbjct: 234 VE-DALLITGAVSQLYIGKLAKSLHDKNVSDAL--------ETLNELLQQGKDPAKLIED 284 Query: 300 VLEPYLIQQGFLQRTPRG 317 ++ + + L +T G Sbjct: 285 MI--FYFRDMLLYKTAPG 300 >UniRef50_Q2LYB8 DNA polymerase III subunit gamma/tau n=2 Tax=root RepID=Q2LYB8_SYNAS Length = 588 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 93/256 (36%), Gaps = 25/256 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP++ E+ VGQ V ++ I+ ++ L GP G+GKT++A Sbjct: 1 MDYLVLARKWRPQVFEDVVGQQHVVQTLKNAIRQERI----AHAFLFSGPRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I+A + P +T DV ID I + + E + Sbjct: 57 ILAKAINCEQGPAGTPCNVCTN--CREITEGISMDVREIDGASNRGIDEIRELRERIRFL 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + E A ++ PP I ATT + + + R + Sbjct: 115 PVSCRYKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFE 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + A + +SD G +A G+ R + + +V +A Sbjct: 175 -FRRLSLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGT--- 230 Query: 240 GTISADIAAQALDMLN 255 I + + L + Sbjct: 231 -AIEDEAVEELLGRTD 245 >UniRef50_UPI00016C0C4B DNA polymerase III, subunits gamma and tau n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4B Length = 522 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 112/315 (35%), Gaps = 35/315 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP+ + VGQ + ++ IK ++ L G G GKTT A I Sbjct: 2 YLTLYRKYRPQKFSDMVGQEHITKTLKNQIKLNRI----AHAYLFTGSRGTGKTTAAKIF 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + P + + + +++ +D + + + EEVLY PA Sbjct: 58 ARAINCKNSVDGKPCEKCV--VCKEIAEGAFVNIIELDAASHNGVDDIRQINEEVLYTPA 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + A ++ PP I ATT + + + R Sbjct: 116 VGVYKVYIIDEVHMLSPAAFNAMLKTLEEPPPYVVFILATTDPQKIPATVLSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 D+ + + +E+ + +AR A G R A +L + F D Sbjct: 175 RRISTSDICDCLLDYMQRENIEIEKEAVELIARLADGGMRDALSILEQCISFYI---DEK 231 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 I+ + + + + + +++ AVI+ + + I ++ I+ Sbjct: 232 ITHSKVLKLVGAV------DNALLFEMMNAVIEMDAAKAI---AVCNEINQQGRNIKQFA 282 Query: 302 EPYLI--QQGFLQRT 314 + L+ + + +T Sbjct: 283 KDLLMHTRNLLIAKT 297 >UniRef50_B7IDS2 DNA polymerase III, gamma and tau subunit n=1 Tax=Thermosipho africanus TCF52B RepID=B7IDS2_THEAB Length = 480 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 119/310 (38%), Gaps = 30/310 (9%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 R RPKL E VGQ V++ +K ++ + GP G GKTT+A I+A Sbjct: 2 QALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEIS----HAYIFAGPRGTGKTTVARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + + P + + + N DVL ID I + + E V Y A Sbjct: 58 KSLNCENKNGVEPCNKC--NTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRETVGYHAAQ 115 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 +Y++ I + E A ++ PP I ATT + + R ++ + Sbjct: 116 GNYKVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVID-FK 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 + D+ + + + +S + E+A+RA G R A +L +V + I Sbjct: 175 NLTIEDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKD----I 230 Query: 243 SADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 + + + L ++ ++ + D K +I+K + + + EE Sbjct: 231 TIEDVRETLGLVPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEEMILK 290 Query: 298 EDVLEPYLIQ 307 + + LI+ Sbjct: 291 IESGDYELIE 300 >UniRef50_B2URG8 DNA polymerase III, subunits gamma and tau n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URG8_AKKM8 Length = 732 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 108/310 (34%), Gaps = 31/310 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ +GQ V ++ I+ +L L GP G GKT+ A Sbjct: 1 MSYQVFARKYRPLTFDDVLGQDHVVRTLKNAIEHNRL----AHAYLFVGPRGTGKTSTAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + + + D+ + DVL ID I + + + V + Sbjct: 57 IFAKALNCSGGP--KVDFDPHEDICEEIAEGRSLDVLEIDGASNRGIDHIRDLRDNVRFA 114 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ + ++ E A ++ PP I ATT + + R Sbjct: 115 PSRGNFRIVYIDEVHMLTKESFNALLKTLEEPPPHVKFIFATTEPHKILPTILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + A G+ +S + A VA+ A G R A +L ++ F Sbjct: 175 -LRPIPSEIIAEHLLHIASAEGVSLSREAAFAVAKVADGGMRDAQSMLDQLVSFC----G 229 Query: 240 GTISADIAAQALDMLNVDAEG------FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 I + + + + LL + ++ G L+ I Sbjct: 230 DHIEEQQVLHIFGITSRETVAHALALILNKELPSLLHLLHEQAEAGRDMSQFLSEIISAV 289 Query: 294 RETIEDVLEP 303 RE + ++P Sbjct: 290 REILVSKVDP 299 >UniRef50_A7HJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJR0_FERNB Length = 517 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 30/295 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + R RPK + VGQ ++ + +K K+ + GP G GKTT A I+A Sbjct: 2 EALYRKYRPKNFYDIVGQEHIKKLLTNALKLQKIN----HAYIFAGPRGTGKTTTARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + P E + N DV+ +D I + + E V + P M Sbjct: 58 KSLNCEKNQFGEPCNECTS--CQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVM 115 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + E A ++ PP I ATT + + R +++ Sbjct: 116 GKYKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLE-FR 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ + G +++ + ++A+RA G R A L +V + G + Sbjct: 175 NISEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALSTLEQVIRYT----GGEV 230 Query: 243 SADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 + I +AL +++ + E DR+L+ +++ + D + E Sbjct: 231 TEKIVDEALGLISEETIEKFIEATLNNDRELIEKILNDIYIERGDFDTFINQLIE 285 >UniRef50_A5IY13 Holliday junction DNA helicase ruvB n=3 Tax=Mycoplasma RepID=A5IY13_MYCAP Length = 320 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 182/306 (59%) Query: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82 +RP +E++GQ ++ ++ I + R + LDH+L +GPPG GKTTLA+++ NE+ Sbjct: 6 LRPTSFKEFIGQKKLIITLKAMIDGSLHRNEVLDHILFYGPPGTGKTTLASLIGNELNKR 65 Query: 83 LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEG 142 + G +LEK D+ ++ N+ +D++FIDEIH ++ VEE++Y AMED+++D++IG Sbjct: 66 VHYLQGALLEKKSDVLSVFANVNENDIVFIDEIHSINRAVEEIIYNAMEDFKIDLIIGPE 125 Query: 143 PAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGL 202 ++ ++++L PFTL+GATT+ L+ P +DRFG++ RL Y ++ I+ S + + + Sbjct: 126 GNSKVMRMNLKPFTLVGATTKLNLLSQPFKDRFGLLARLSQYSNEEIVKILQNSKKKLKV 185 Query: 203 EMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFD 262 E D + +A+ +R TPRIAN LL+R DF+ + I A L + G + Sbjct: 186 ETDSDVLMLLAKYSRNTPRIANHLLKRAYDFSLKNNQSIIDAKTTYLTFKHLELFDLGLN 245 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 + L + + F+ V +D ++ + +E + + +EPYL+ ++++PRGR TT Sbjct: 246 KEHIEYLSLLSNSFYDKFVSIDAISGILNMSKENLINDIEPYLLYLQLIEKSPRGRRITT 305 Query: 323 RAWNHF 328 + ++ Sbjct: 306 KGVDYL 311 >UniRef50_C3QNI8 DNA polymerase III subunit gamma/tau n=13 Tax=Bacteroidales RepID=C3QNI8_9BACE Length = 621 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 110/323 (34%), Gaps = 31/323 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V+ R RP E VGQ + + ++ I KL L GP G+GKTT A I Sbjct: 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKL----AHAYLFCGPRGVGKTTCARIF 59 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA- 129 A + T G + + +++ +D + + +VE+V P Sbjct: 60 AKTINCMTPTADGEACNQC-ESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQ 118 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + A ++ PP I ATT + + R I Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYD-F 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V D +S A G+ + +A +A G R A + +V F G Sbjct: 178 NRISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFT----GGN 233 Query: 242 ISADIAAQALDMLNVDAE------GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 I+ L++L+ + + LL D G G + R+ Sbjct: 234 ITYKSVIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRD 293 Query: 296 TIEDVLEPYLIQQGFLQRTPRGR 318 + +P + + + R R Sbjct: 294 LLVGK-DPVTLPLLEVGASIRQR 315 >UniRef50_A3NA70 DNA polymerase III, subunits gamma and tau n=16 Tax=Proteobacteria RepID=A3NA70_BURP6 Length = 826 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 107/321 (33%), Gaps = 41/321 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK VGQ V + + +L L G G+GKTTL+ Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLH----HAYLFTGTRGVGKTTLSR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + TS P + D + +D + ++ ++E +Y Sbjct: 57 IFAKALNCETGVTSQPCGVCRA--CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA 114 Query: 129 AME-DYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 ++ +++ ++ A ++ PP I ATT + + R Sbjct: 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + R + +AR A+G+ R A L + ++ Sbjct: 175 -LKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA---- 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 ++ + L L+ + D +LAV D+ + + +AA+ + Sbjct: 230 NEVTETAVSGMLGTLDQTYMVRLLDALAAADGPQILAVADEMA---LRSLSFSAALQDLA 286 Query: 295 ETIEDVLEPYLIQQGFLQRTP 315 L + + Q P Sbjct: 287 S--------LLHRIAWAQFAP 299 >UniRef50_Q7MIV2 DNA polymerase III, subunits gamma and tau n=41 Tax=Vibrio RepID=Q7MIV2_VIBVY Length = 730 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 61/353 (17%), Positives = 115/353 (32%), Gaps = 45/353 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ +E VGQ V + +E ++ +L L G G+GKT++ Sbjct: 1 MSYLALARKWRPRQFKEVVGQGHVLTALENALEHNRLH----HAYLFSGTRGVGKTSIGR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + TS P + D + D+L ID + +++ V Y Sbjct: 57 LFAKALNCEKGITSAPCGQC--DTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V + + G+ +A A G+ R A L + + Sbjct: 174 HLKPITVDAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIAL----GN 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG--- 291 G I D+ + L ++ D E ++ + I + D L + Sbjct: 230 GQIETDLVSHMLGTIDTDQAIHLLEAISSKQPQVAMDKIQQLAQNGAEWDGLLQQLATQL 289 Query: 292 ---EERETIE---DVLEPYLIQQGFLQRT--PRGR----MATTRAWNHFGITP 332 + + D +P + L R P+ + + + P Sbjct: 290 HRIAMYQLLPSSLDKAQPDAEKIELLSRALSPQDVQLFYQIALKGRDDLSLAP 342 >UniRef50_Q1QXJ7 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q1QXJ7_CHRSD Length = 723 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 25/256 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E VGQ V + + +L L G G+GKTTLA Sbjct: 1 MSYQVLARKWRPRTFHELVGQEHVSRALVNALDQGRLH----HAYLFTGTRGVGKTTLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + TS P E + + D++ +D + +++ V Y Sbjct: 57 ILAKCLNCRQGVTSVPCGEC--ETCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + +S + + + + + A G+ R A L + F Sbjct: 174 TLKNMPPERVVGHLSHILQAESVAYDEQALWLLGKAADGSMRDAMSLTDQAIAF----GQ 229 Query: 240 GTISADIAAQALDMLN 255 G + A L L+ Sbjct: 230 GEVRHADVAAMLGTLD 245 >UniRef50_D1BPK5 DNA polymerase III, subunits gamma and tau n=4 Tax=Firmicutes RepID=D1BPK5_VEIPT Length = 895 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 107/310 (34%), Gaps = 31/310 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ QV + I+ L GP G GKT++A Sbjct: 1 MAYIALYRKYRPQTFTDVVGQHQVSDTLMRAIR----EDKVAHAYLFAGPRGTGKTSMAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + T P E + + + + DVL ID I + + E V + Sbjct: 57 IFARAINCEHGPTDHPCNECSA--CRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFM 114 Query: 129 AMEDYQ-------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 +E + ++ E A I+ PP I ATT L + R Sbjct: 115 PVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRY- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 D+ +S A G ++ A +A A G R A +L + A Sbjct: 174 TFRRITSDDIAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMAT---- 229 Query: 240 GTISADIAAQALDMLN-----VDAEGFDYMD-RKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 G+I+ + + + +++ + D K+L V D G + A I Sbjct: 230 GSITPQVVEELIGLVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHV 289 Query: 294 RETIEDVLEP 303 R + + P Sbjct: 290 RALLVGKVAP 299 >UniRef50_B0TAU1 DNA polymerase iii gamma/tau subunit n=2 Tax=Clostridiales RepID=B0TAU1_HELMI Length = 606 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 114/316 (36%), Gaps = 34/316 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ +E VGQ V ++ I ++ L GP G GKTT A Sbjct: 1 MAYLALYREWRPQSFQELVGQEHVSRTLQNAIAYQRI----AHAYLFCGPRGTGKTTTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + + P + + HDVL ID + + + E+V Y Sbjct: 57 ILAKALNCSGHGPVRPCNDCLN--CRAINTGASHDVLEIDAASNRGVDEIRELREQVKYA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E +Y++ I + E A ++ PP + ATT + + + R Sbjct: 115 PQEGNYKVYIIDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V ++ + R R + S + +AR+A G R A +L + +A Sbjct: 175 -FRRLGVNEIVDRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYA----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVI-DKFFGGPVGLDNLAAAIGEERETIE 298 I + L + D + + + D+ + L++L E R Sbjct: 230 NEIDSGDVTAILGAVA------DEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTR 283 Query: 299 DVLEPYLIQQGFLQRT 314 D+L Y + + RT Sbjct: 284 DLLGHY--RDRLILRT 297 >UniRef50_Q600N3 Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Mycoplasma RepID=RUVB_MYCH2 Length = 318 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 117/315 (37%), Positives = 198/315 (62%), Gaps = 3/315 (0%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 +PE++ IRP E ++GQ ++ ++I I +++ R +LDH+L +GPPG GKTTLAN Sbjct: 1 MPENL---EIRPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLAN 57 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133 IVAN + ++ GP+LEK D+ A+L N+ P ++FIDEIH ++ +EE+LY AME++ Sbjct: 58 IVANVLEAKIKYVQGPLLEKKSDVLAVLANISPDTIIFIDEIHGINKNIEELLYSAMEEF 117 Query: 134 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIV 193 +D+ IG + +++ LP FTLIGA+T+ +++PL++RFG V ++ Y + D+ I+ Sbjct: 118 VIDLQIGVDGERKIMRMKLPQFTLIGASTKLAQISTPLQNRFGYVAKIVDYTLEDMIQII 177 Query: 194 SRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDM 253 S+ + L+M+ + +A + TPRIAN LL+R+RDFA V + I DI + D Sbjct: 178 RNSSAVLKLKMNTEIIKYIASFSNNTPRIANNLLKRIRDFALVLNAKRIDKDIVNKTFDS 237 Query: 254 LNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQR 313 + + +G ++ + L ++ F G V LD +A + E R+TI +++EP LI++ +++ Sbjct: 238 IGIYNQGLSQINIEYLNLLVKIFKGKSVALDVIANVLKEHRQTIINIIEPPLIEKELIEK 297 Query: 314 TPRGRMATTRAWNHF 328 T RGR T + ++ Sbjct: 298 TSRGRRITKKGRDYL 312 >UniRef50_B1L8C0 DNA polymerase III, subunits gamma and tau n=6 Tax=Thermotogaceae RepID=B1L8C0_THESQ Length = 478 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 120/322 (37%), Gaps = 36/322 (11%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 +V R RPK E V Q V+ + I+ + + GP G GKTTLA I+A Sbjct: 2 EVLYRKYRPKTFSEVVDQDHVKKAIIGAIQ----KNSVAHGYIFAGPRGTGKTTLARILA 57 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAME 131 + R P + DV+ +D I + + + V Y ME Sbjct: 58 KSLNCENRKGVEPCNSCRA--CREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYRPME 115 Query: 132 -DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + E A ++ PP + ATT + + R + + Sbjct: 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFE-FR 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ + A G+E+ + +A+RA G R A +L +V F+E G I Sbjct: 175 NIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE----GKI 230 Query: 243 SADIAAQALDMLNV-----DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 + +AL ++ + D K + V+D + + L E + Sbjct: 231 DLETVHRALGLIPIQVVRDYVNAIFSGDVKRVFTVLDDVYYSGKDYEVLIQ------EAV 284 Query: 298 EDVLEPYLIQQGFLQRTPRGRM 319 ED++E ++G Q + + Sbjct: 285 EDLVEDLERERGVYQVSANDIV 306 >UniRef50_A9NE33 DNA polymerase III, gamma and tau subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE33_ACHLI Length = 564 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 113/310 (36%), Gaps = 31/310 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK ++ GQ + ++ + K+ + GP G GKT++A Sbjct: 1 MSYVALYRTYRPKFFKDVFGQKVIVQTLQNALLNEKIG----HAYIFSGPRGTGKTSVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 IVA + P + D+ + + D++ ID + + + ++V Y Sbjct: 57 IVAKALNCLEAPAKEPCGKC--DVCLGVDRGDVPDIIEIDAASNNGVDEIRDLRDKVKYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P++ Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PSIGKYKVYIIDEVHMLTTAAFNALLKTLEEPPKYVVFILATTEPHKVPATILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ ++ + + L+++ + +AR A G R A LL +V F + Sbjct: 175 -FKNIEMDQIEENLKQIINKENLKITPEALTAIARTAEGGMRDALSLLDQVVSFT----N 229 Query: 240 GTISADIAAQALDML------NVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 I+ + L + + +K L + G ++ I Sbjct: 230 DEITEEDIYTVSGGLSRRYINELLKVIYLKQPQKALDLLNQIIKDGKDIARMVSDIILAL 289 Query: 294 RETIEDVLEP 303 R+ + D + P Sbjct: 290 RDVLLDKIRP 299 >UniRef50_C4FVD6 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVD6_9FIRM Length = 655 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 115/312 (36%), Gaps = 33/312 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ +E VGQP + ++ +K +L L GP G GKT+ A Sbjct: 1 MSYQALYRVWRPQSFDELVGQPLIAETLKNAVKNQQLS----HAYLFTGPRGTGKTSAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + +T P + +L +T + DV+ ID + + + ++V Y Sbjct: 57 ILAKAVNCPHQTDGNPCNQC--ELCQAITAGQLSDVIEIDAASNNGVEEIRDLRDKVRYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PSQATYKVYIIDEVHMLTTGAFNALLKTLEEPPAQVLFILATTEPHKIPATIISRTQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 DL + G++ + +AR A G R + LL + + Sbjct: 175 -FGRISQADLVGRMQYILEQDGIDFEAEALAVIARAANGGMRDSLSLLDQALSYNRS--- 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++ A + L+ L A+ + GP L L A++ E ++ Sbjct: 231 -AVTVQSALEVTGSLSQLVY------IDYLTAL--QAQDGPKALSILQASLQEGKQANRF 281 Query: 300 VLEPYLIQQGFL 311 V E L + L Sbjct: 282 VEELILFCRDLL 293 >UniRef50_B5YCC7 DNA polymerase III subunit gamma/tau n=2 Tax=Dictyoglomus RepID=B5YCC7_DICT6 Length = 521 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 113/299 (37%), Gaps = 30/299 (10%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP+ EE VGQ + ++ ++ + L GP G GKTT+A I+A Sbjct: 5 LYRKWRPQTFEEVVGQEHIVITLQNSLRYNHIG----HAYLFAGPRGTGKTTIARILAKA 60 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPAMED 132 + T P L+ + + DV+ ID I + + E+ L P + Sbjct: 61 LNCVQGPTPTPCLKC--ESCVEIAEGRSIDVIEIDAASNRGIDEIRDIREKARLLPVRDR 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R Sbjct: 119 YKVYIIDEVHMLTNEAFNALLKILEEPPEHVVFIMATTEPQKVPLTILSRCQRFD-FRRL 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ +++ A G ++S+ +A +++G+ R A LL ++ ++ D I+ Sbjct: 178 TRDEVIKQLAKIAEKEGAKISEGALRLIAIQSQGSMRDAISLLEQLLVYS----DQEITE 233 Query: 245 DIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 ++A L + + A+ + +++ + F A + + + Sbjct: 234 ELARNLLGLPTYEFTYNFAKALGEYNILEGYSLLQQIFQMGKNPQQFAKELLQHFRNLL 292 >UniRef50_A1S561 DNA-directed DNA polymerase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S561_SHEAM Length = 909 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 107/342 (31%), Gaps = 41/342 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLH----HAYLFTGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + + + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEQGITATPCGQCSA--CREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ ++ A ++ PP + ATT L + R Sbjct: 115 PSRGRFKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ P +Q ++ GL +D +A+ A G+ R A L + F Sbjct: 175 -LKALTQPQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 G + L ++ + D + LL G D + A+ E Sbjct: 230 GEVRLAQVQTMLGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLE-- 287 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP 336 L Q Q P + P Sbjct: 288 ---------LLHQISLAQFAPATASISDNGAAVLAWAQALKP 320 >UniRef50_B7RU95 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU95_9GAMM Length = 591 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 30/290 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK E VGQ V + + +L L G G+GKTT+A Sbjct: 1 MTYQVLARKWRPKSFGEMVGQEHVLQALINALDHDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + +S P E + D+L +D + ++E V Y Sbjct: 57 ILAKCLNCEQGVSSHPCGECGS--CLEIAEGRSVDLLEVDAASRTKVEDTRELLENVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + + R Sbjct: 115 PTRSRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + + + R A G+ R A L + F Sbjct: 175 -LKNMPPEQIVGHLANVLEHEMVSFEEPALWLLGRAASGSMRDALSLTDQAIAF----GS 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLD 284 G + L +++ EG D LLA++ + + Sbjct: 230 GKLIETDVRSMLGSVDLSFVYQLLEGVAAGDPAELLAIVGRMAEHAPDFE 279 >UniRef50_B7IZ38 DNA polymerase III subunit gamma/tau n=4 Tax=Bacillus cereus group RepID=B7IZ38_BACC2 Length = 548 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 112/312 (35%), Gaps = 40/312 (12%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP E +GQ ++ ++ +K AK + GP G GKTT+A ++ Sbjct: 2 YQALYRKYRPTNFSELIGQNHIKQTIQNALKLAK----FSHAYMFTGPRGTGKTTIAKLI 57 Query: 76 ANEMGVN-LRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-P 128 A + L P E + + DVL ID + ++ + E+V Y P Sbjct: 58 ATSLNCESLNNEGEPCNECSQ--CKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAP 115 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + A ++ PP I ATT + + + R Sbjct: 116 GTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFD- 174 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 D+ + A +++ +D + A+G R A L+ + FA + Sbjct: 175 FRRIGPRDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFAT---NE 231 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 TI+ D ++ + ++++ + A I G N + + I + Sbjct: 232 TITKDDVSEVVGRISIEK----------IEACIGDLLKG-----NTIEILNLINQVILNG 276 Query: 301 LEPYLIQQGFLQ 312 EP + + + Sbjct: 277 KEPIYLLEDLIG 288 >UniRef50_A6T0H3 DNA polymerase III gamma and tau subunit n=3 Tax=Betaproteobacteria RepID=A6T0H3_JANMA Length = 673 Score = 293 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 110/358 (30%), Gaps = 50/358 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ V + + +L L G G+GKTTL+ Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLH----HAYLFTGTRGVGKTTLSR 56 Query: 74 IVANEMGV-----NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVE 123 I+A N TS P + + D + +D + ++ ++E Sbjct: 57 ILAKSFNCVGPDGNGGITSTPCGVC--EACVAIDAGRFVDYIEMDAASNRGVDEMAQLLE 114 Query: 124 EVLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 + +Y P+ +++ ++ + ++ PP I ATT + + R Sbjct: 115 QAVYAPSNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L+ + + +E +A+ A G+ R A L + +A Sbjct: 175 CLQFN-LKQMPPGHIVSHLDNILGQENIEFETPALRLLAQGAHGSMRDALSLTDQAIAYA 233 Query: 235 EVKHDGTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAA 289 G ++ D L L+ + D LLAV D+ + + Sbjct: 234 A----GKVTLDAVQGMLGALDQSFLIRLLDALAEKDGAGLLAVADEMATRSLSYNAALQD 289 Query: 290 I----------GEERETIEDVLEPYLIQQGFLQ-RTPRGR----MATTRAWNHFGITP 332 + + + L Y N G+ P Sbjct: 290 LCTLLHRVALAQTVPAAVPEDLPEYADVMRLAGLFDAEEIQLFYQIAVHGRNELGLAP 347 >UniRef50_Q3A7L0 DNA polymerase III, gamma/tau subunits n=4 Tax=Desulfuromonadales RepID=Q3A7L0_PELCD Length = 582 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 98/281 (34%), Gaps = 35/281 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ ++ VGQ V + IK ++ L G G+GKT+ A Sbjct: 1 MSYLVLARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVH----HAFLFTGARGVGKTSAAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + + P ++ + DV ID + + + E + Y Sbjct: 57 IFAKALNCEQGLSPQPCNVCQS--CREISAGQGLDVFEIDGASNTGVDDIRELRENIRYL 114 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y+ + ++ A ++ PP I ATT + + R Sbjct: 115 PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 +P + + A G+ +S+ VARR G+ R A +V F Sbjct: 175 -FRKIPLPLIVARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFC----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP 280 + D L M+ DR+LL+ ++ G Sbjct: 230 DAVGEDDVQGLLGMV----------DRRLLVDTLESLLGHD 260 >UniRef50_Q2RMH2 DNA polymerase III, subunits gamma and tau n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMH2_MOOTA Length = 589 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 109/313 (34%), Gaps = 39/313 (12%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP+ E VGQ + + ++ +L + L GP G GKT+ A I+ Sbjct: 4 YQALYRQWRPRTFAEVVGQEHITRTLRNALRTGRL----VHAYLFCGPRGTGKTSTAKIL 59 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPA 129 A + P E A + DVL +D I + ++E++ L P Sbjct: 60 ARAINCLAPREGEPCNECAN--CRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPV 117 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + E A ++ PP I ATT + + R Sbjct: 118 EGRYKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFD-F 176 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V + + A G+E+ ++R+A G R A LL ++ G Sbjct: 177 HPLTVQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILA---SGTRGP 233 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 ++A A L +D LLA+ D G A + + + + Sbjct: 234 VTAGQVAVTLGTARLD----------TLLALTDALATGDG-----AGVLNLVDKALASGI 278 Query: 302 EPYLIQQGFLQRT 314 EP + + L T Sbjct: 279 EPRRLLEDLLDHT 291 >UniRef50_D1PBF2 DNA polymerase III, gamma and tau subunit n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBF2_9BACT Length = 638 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 117/316 (37%), Gaps = 31/316 (9%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 V+ R RP + VGQ + + ++ +K+ KL L GP G+GKTT A I Sbjct: 3 EYIVSARKYRPMTFDSVVGQSALTTTLKNAVKSGKL----AHAYLFCGPRGVGKTTCARI 58 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPA 129 A + G + + +++ +D + ++ ++E+ P Sbjct: 59 FAKAINCEHPREDGEACNEC-ESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPP 117 Query: 130 -MEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 + Y+ + ++ A ++ PP I ATT + + R I Sbjct: 118 QVGKYKVFIIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYD- 176 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 E V + + A G++ + +A +A G R A + + F G Sbjct: 177 FERMTVANTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCM----G 232 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 I+ + L++L+ D R + LA+ +K V LD + + I+ + Sbjct: 233 NITYQKVIEDLNVLDSDN-----YFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGL 287 Query: 301 LEPYLIQQGFLQRTPR 316 + ++ + + P+ Sbjct: 288 AQH--VRNVMMAKDPQ 301 >UniRef50_B1ZQU6 DNA polymerase III, subunits gamma and tau n=3 Tax=Verrucomicrobia RepID=B1ZQU6_OPITP Length = 395 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 106/310 (34%), Gaps = 31/310 (10%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 ++ V R RP+ ++ VGQ V ++ I ++ L GP G GKT+ Sbjct: 2 SSTGYQVIARKWRPQTFDDVVGQDHVVRTLKNAIARNRI----AHAYLFVGPRGTGKTST 57 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 A I A + + + DV+ ID + ++ + + V Sbjct: 58 ARIFAKALNCTDGP--KADFDPNDPACKAIAEGSHLDVIEIDGASNNGVDQVRDLRDTVQ 115 Query: 127 Y-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 Y PA Y++ I + A ++ PP + ATT + + R Sbjct: 116 YAPAQGRYKVYIIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQR 175 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 L+ + + + A + +S +AR A G R A +L ++ F Sbjct: 176 FD-LKPIPPDLIIARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCGTD 234 Query: 238 HDGTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 IS +++ + D + ++A++D L L + + Sbjct: 235 ----ISEADVLDVYGLVSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQA 290 Query: 293 -ERETIEDVL 301 R + D + Sbjct: 291 FVRAALLDAI 300 >UniRef50_B1I0B5 DNA polymerase III subunit gamma/tau n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1I0B5_LYSSC Length = 636 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 108/331 (32%), Gaps = 41/331 (12%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V R RP+ + +GQ V++ +E IK L GP G GKT+ A I A Sbjct: 7 VLYRKYRPQGFDNLIGQNHVKNTLENSIK----HNKVAHAYLFTGPRGTGKTSAAKIFAK 62 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAME 131 + P E D++ +D + + + E+V Y PA Sbjct: 63 LLNCQSPIDYNPCGECVCC------QDSNTDIIEMDAASNNGVDDIRDLREKVNYAPAFG 116 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 ++ I + A ++ PP I ATT + + + R Sbjct: 117 KKKVYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYD-FRR 175 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 D+ + + +E+ + +++ A G R A LL + K +G ++ Sbjct: 176 ISQDDIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAIS----KVEGKVT 231 Query: 244 ADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEP 303 + ++ G + + G + + E +E+++ Sbjct: 232 LQDIIEITGAVDTRKIG---TLIQYIN--QSNIEGALEHFNTCFESGQEPHFFLEEMM-- 284 Query: 304 YLIQQGFLQRTPRGRMATTRAWNHFGITPPE 334 ++ + R +A G P+ Sbjct: 285 IYLRDILVN-----RKLGEKATLKKGHNDPQ 310 >UniRef50_UPI0000E0E6B7 DNA polymerase III subunits gamma and tau n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E6B7 Length = 834 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 114/338 (33%), Gaps = 42/338 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V + + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPNKFSELVGQEHVVTAISNALDNNRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + + ++ P E + D+L ID + +++ V Y Sbjct: 57 IFAKSLNCDTGLSANPCGECG--TCRDIEQGRFVDLLEIDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P DY++ ++ A ++ PP + ATT L + R Sbjct: 115 PTQGDYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ +Q +S + ++AR A G+ R A L + + + Sbjct: 175 -LKALSREQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSLTDQAIA----QGN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP-----VGLDNLAAAIGEER 294 IS + + L ++ D+ +L ++ G +++LA Sbjct: 230 NQISTVVVSDMLGLM----------DKNQILKILHSMIEGDKIAVFEQVESLAQTSPNYA 279 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMA-TTRAWNHFGIT 331 + D L L Q Q P T A + + Sbjct: 280 HVL-DELMSLLHQIAMTQVVPEVCKLETISARAIYKLA 316 >UniRef50_C9LV54 DNA polymerase III, gamma and tau subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LV54_9FIRM Length = 691 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 33/303 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP ++ VGQ V + I A ++ L GP G GKT+ A Sbjct: 28 MAYIALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRI----AHAYLFSGPRGTGKTSTAK 83 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + T P + + DV ID I + + E+V + Sbjct: 84 ILAKSLNCEKGPTPEPCGVCKN--CTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFT 141 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ I + E A ++ PP I ATT + + ++ R Sbjct: 142 PAEGRYKVYIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFD 201 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V +++ ++ A+ M + + +AR+A G R A LL + Sbjct: 202 -FRRITVEEIEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASL----DG 256 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 T++A + L ++ + L I + G V L+ +A + ++ ++ Sbjct: 257 DTLTAACVEENLGLIG-------HEPIYRLTKAIGERAKGEV-LETIAELLALGKDPMQL 308 Query: 300 VLE 302 + E Sbjct: 309 LAE 311 >UniRef50_D0LUL1 DNA polymerase III, subunits gamma and tau n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUL1_HALO1 Length = 649 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 107/318 (33%), Gaps = 30/318 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V + ++ L GP G+GKTT A Sbjct: 1 MSYVVLARKYRPNTFSEVVGQEHVTRTLANAFAKDRVH----HAFLFCGPRGVGKTTAAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+ + T+ P +TN D +D I + + E V Y Sbjct: 57 ILGKALNCERGPTAEPCGSCVA--CETITNGTAVDYFEMDGASNRGIDAIRELTEAVRYQ 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA+ ++ ++ E A ++ PP + + ATT + + + R Sbjct: 115 PAVLRKKVYVIDEVHMLTTEAFNALLKTLEEPPPHVSFVLATTEPHKVPNTILSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + P L + R +E+ + R + G+ R + L +V + + Sbjct: 175 -FKLVPAPKLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYVGTSNI 233 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G A+ L + + R L+ A+ + + A A G + + Sbjct: 234 GE---SDVAEVLGV------ADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLAR 284 Query: 300 VLEPYLIQQGFLQRTPRG 317 + YL +Q P Sbjct: 285 AIVRYLRDLAVMQVAPEA 302 >UniRef50_Q47XQ9 DNA polymerase III, gamma/tau subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XQ9_COLP3 Length = 715 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 103/296 (34%), Gaps = 30/296 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK ++ +GQ V + + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + L T P + D + D+L ID + +++ V Y Sbjct: 57 IFAKSLNCELGITDKPCGKC--DACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ ++ A ++ PP I ATT L + R Sbjct: 115 PSRGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V ++ ++ + +A+ ARG+ R + L + + Sbjct: 174 HLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIA----QGQ 229 Query: 240 GTISADIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI 290 G I+ Q L ++ + D + L+ + + L A + Sbjct: 230 GHINLTNIQQMLGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAEL 285 >UniRef50_C3XBH9 DNA polymerase III subunit gamma n=2 Tax=Oxalobacter formigenes RepID=C3XBH9_OXAFO Length = 604 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 45/353 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK E VGQ V + +++ +L L G G+GKTTL+ Sbjct: 1 MSYLVLARKYRPKNFENIVGQDHVVRALSHALESQRLH----HAYLFTGTRGIGKTTLSR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + T+ P + + + D + +D I + ++E+ +Y Sbjct: 57 ILAKSLNCEKGITASPCG--ICEACKAIDSDRFVDYVEMDAASNRGIADMLQLLEQAVYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ + A ++ PP I ATT + + R Sbjct: 115 PTAARFKVYMIDEVHMLTSQAFNAMLKTLEEPPEYVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ V + +SR + +A+ A+G+ R A L + + Sbjct: 175 -LKQMPVSHIVDHLSRILELENIPFEKPALRLLAQGAQGSMRDALSLADQAIAYTA---- 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVID-----------KFFGGPVGL 283 G ++ + L L+ + D LL V D + L Sbjct: 230 GHVTDEAVQDMLGALDQTYLIRLLDHLANRDGTSLLKVADEMAFRSLSYSTALQDLGLLL 289 Query: 284 DNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGR----MATTRAWNHFGITP 332 +A ++D+ + + + +P N G+ P Sbjct: 290 QKIAMIQSVPDYPLDDIADSDNLSRLAAIFSPEELQLYYQIAIHGRNELGLAP 342 >UniRef50_C9RKH0 DNA polymerase III, subunits gamma and tau n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKH0_FIBSS Length = 575 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 113/329 (34%), Gaps = 34/329 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ + +E I+ +L L G G+GKTT A Sbjct: 1 MAYIAMARKWRPQSFSDMVGQEHIAKTLENAIQGGRLH----HAFLFTGTRGVGKTTSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYP 128 I+A + P E D + P DV ID + + V+E V YP Sbjct: 57 ILARTLNCKGSDPLHPCGEC--DSCKDIAGGNPMDVYEIDAASNTSVDNIRDVIERVQYP 114 Query: 129 AM-EDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 + Y+ + ++ A ++ PP I ATT + + R Sbjct: 115 PVIGKYKIFIIDEVHMLSTGAFNALLKTLEEPPAHVIFIFATTEVNKVPQTILSRVQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + V ++ + G++ +D+ A +A G+ R + F Sbjct: 175 -FKRLTVDQIRSRLRYICEQEGIKATDEALDIFAEKADGSMRDGLTYFDQAYAFT----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 ++A+ L + V + L+ ++ + G + + A IG E + D Sbjct: 230 NEMTAESVRSVLGIPPV------ELFFSLIQSIENHDIKGCFRMVDDAVKIGIEFIPLLD 283 Query: 300 VLEPYLIQQGFLQ---RTPRGRMATTRAW 325 +L + + TP T + Sbjct: 284 GFGKFLRNLLYARLDAFTPDALNITEELY 312 >UniRef50_C4ZNJ5 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C4ZNJ5_THASP Length = 716 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 108/326 (33%), Gaps = 33/326 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK VGQ V + + +L L G G+GKTT++ Sbjct: 1 MSYQVLARKWRPKSFGTLVGQEHVVRALTHALATGRLH----HAWLFTGTRGVGKTTISR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + T+ P D + D + +D + ++ ++++ +Y Sbjct: 57 ILAKALNCETGITAEPCG--ICDACRAIDADRFPDYVEMDAASNRGVEEMAALLDKAVYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ G A ++ PP I ATT + + R Sbjct: 115 PVQGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++R + + +A+ A G+ R A LL + Sbjct: 175 -LKQMPQGHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAIAH----GA 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 G + + + L + D + D LLAV D + D AA+ Sbjct: 230 GRVEEEQVSHMLGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFD---AALQALA 286 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMA 320 + V R R+ Sbjct: 287 TLVHRVALAQYAPAAIADELERARIL 312 >UniRef50_B8I549 DNA polymerase III, subunits gamma and tau n=5 Tax=Clostridium RepID=B8I549_CLOCE Length = 562 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 115/304 (37%), Gaps = 30/304 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP + E+ V Q V ++ +K+ ++ L G G GKTT+A Sbjct: 1 MSYTALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRI----AHAYLFCGTRGTGKTTMAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + P E ++ + + DV+ ID + + + +EV+Y Sbjct: 57 IFARAINCINPKDGNPCNEC--EVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + A ++ PP I ATT L + + R Sbjct: 115 PSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + V A+ G+ + DDGAL +AR A G R A +L + + Sbjct: 175 -FKKITPAGIAERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIA----EGS 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 TI+ A+ +++ D + + + + L+A ++ + A+ + Sbjct: 230 TTITYQNVLDAIGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYF 289 Query: 295 ETIE 298 + Sbjct: 290 RNLL 293 >UniRef50_A9GQB3 DNA polymerase III subunit Tau n=2 Tax=Myxococcales RepID=A9GQB3_SORC5 Length = 829 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 110/320 (34%), Gaps = 33/320 (10%) Query: 10 AGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKT 69 + V R RP+ E+ VGQ V + + I ++ L G G+GKT Sbjct: 33 VEQRMSYVVLARKWRPQSFEDLVGQEHVSTTLANAIARDRV----AHAFLFTGVRGVGKT 88 Query: 70 TLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE 124 T A I+A + T+ P A A +T DV ID + + + E Sbjct: 89 TSARILAKALNCVHGPTATPCQTCAP--CAEITVGADVDVQEIDGASYNGVDEVRKLQES 146 Query: 125 VLY-PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRF 175 + Y PA + ++ + ++ A ++ PP I ATT + + R Sbjct: 147 LPYRPARDRFKIFIVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRC 206 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + + + + D +AR A G+ R A LL +V + Sbjct: 207 QRYD-FKLIGAQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVG 265 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG-PVGLDNLAAAIGEER 294 D I+A+ A+ L + DR +L + G P + + +E Sbjct: 266 TSGD-RITAEGVAKVLGVA----------DRVVLHRLAGALVDGDPAACVRIVGELAQEG 314 Query: 295 ETIEDVLEPYLIQQGFLQRT 314 + V +L L Sbjct: 315 YDLPHVARDFLAHLRDLVVA 334 >UniRef50_C6PF43 DNA polymerase III, subunits gamma and tau n=2 Tax=Thermoanaerobacterales RepID=C6PF43_CLOTS Length = 533 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 106/303 (34%), Gaps = 32/303 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP+ E +GQ + ++ IK ++ L G G GKT++A I Sbjct: 2 YQSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIG----HAYLFCGTRGTGKTSVAKIF 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + P + N D++ ID + + + + ++Y P+ Sbjct: 58 AKAVNCPNSVEGEPCNRC--QICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPS 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + G A ++ PP I ATT + + + R Sbjct: 116 ICKYKVYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + + A+ + + + +AR G+ R A +L + + + Sbjct: 175 KRIPSKVISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSY-----NDV 229 Query: 242 ISADIAAQALDMLNVD------AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 ++ D L +N D D ++++ + G + + A + R+ Sbjct: 230 LTYDDVCDILGTVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRD 289 Query: 296 TIE 298 + Sbjct: 290 IVI 292 >UniRef50_C0DT09 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT09_EIKCO Length = 754 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 96/290 (33%), Gaps = 30/290 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK + VGQ V ++ + +L L+ G G+GKTT+A Sbjct: 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALGKGRLH----HAYLLTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + P + + D+L ID I + V+E Y Sbjct: 57 ILAKSLNCETPHEGEPCGQCQS--CRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + A ++ PP I ATT + + R Sbjct: 115 PTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + ++ + + R A G+ R A LL + Sbjct: 175 -LRNMTAQQVSQHLAHVLTSEQIPYEAPALALLGRAAAGSMRDALSLLDQAIAM----GS 229 Query: 240 GTISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLD 284 G+++ Q + ++ D +LLA + G +G D Sbjct: 230 GSVTEADVRQMIGAVDQHYLYSLLQAAANQDGAVLLATAQEMAGRAIGFD 279 >UniRef50_C0GJ85 DNA polymerase III, subunits gamma and tau n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ85_9FIRM Length = 525 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 25/256 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RP+ + VGQ V ++ ++ +L L GP G GKT+ A I+ Sbjct: 2 YQALYRQWRPQFFADMVGQQHVARTLQNALEQDRL----AHAYLFCGPRGTGKTSAAKIL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAM 130 A + + P E A + DV ID I + + E+ Y + Sbjct: 58 AKAINCEKGPSREPCNECAA--CRGIQAGRVMDVQEIDAASNRGIDEIRELREKARYSPV 115 Query: 131 E-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 E +++ I + E A ++ PP + ATT L + + R + Sbjct: 116 EVRHKVYIVDEVHMLTQEAFNALLKTLEEPPGRVLFVLATTEPHKLPATIISRCQRLD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + D+ + G + DD +A A G R A LL ++ ++E G Sbjct: 175 HLIGMTDIAERLRSVVDDSGRSIQDDALYLIAEEAAGGLRDALSLLEQIMAYSE----GN 230 Query: 242 ISADIAAQALDMLNVD 257 IS + L + D Sbjct: 231 ISDEDVLAVLGAVGRD 246 >UniRef50_A3PFA5 Holliday junction ATP-dependent DNA helicase ruvB n=7 Tax=Prochlorococcus marinus RepID=RUVB_PROM0 Length = 352 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 137/306 (44%), Positives = 209/306 (68%), Gaps = 2/306 (0%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP L+E++GQ Q++S + I I A+ R + L+H+L++G PGLGKTTLA ++A+E+ Sbjct: 41 RPLTLKEFIGQEQLKSSLRIAIDASIFRKEPLEHILLYGQPGLGKTTLAFLIAHELNTKC 100 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + + P +E+ D+ +L L+ +VLFIDEIHRL+ + EE+LY AMED++LD+ +G Sbjct: 101 KIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANK 160 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 R I+LP FTLIGATT+ S+++PLRDRFGI Q++EFY +L+ I+ +R + L Sbjct: 161 GTRCRTINLPRFTLIGATTKLASISAPLRDRFGISQKIEFYNYDELKQILLNFSRLINLN 220 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAE-VKHDGTISADIAAQALDMLNVDAEGFD 262 + D+ + ++A+ +RGTPRIA RLLRRVRD+A+ V TIS ++ +AL+ +D +G D Sbjct: 221 LDDEASYDLAKISRGTPRIALRLLRRVRDYAQVVMKTNTISVNLIKKALNSYQIDDKGLD 280 Query: 263 YMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATT 322 +DR L I++ P+GLD++AA +G++ +E V+EPYLI+ GFL RTPRGR+ T Sbjct: 281 SLDRHYLS-FINQNNNIPIGLDSIAAGLGDDSSMLEFVVEPYLIKIGFLTRTPRGRLLTA 339 Query: 323 RAWNHF 328 + Sbjct: 340 LGKKYI 345 >UniRef50_C5J672 Holliday junction ATP-dependent DNA helicase r n=2 Tax=Mycoplasma RepID=C5J672_MYCCR Length = 321 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 181/308 (58%) Query: 21 RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80 IRP E ++GQ ++ +++ I++++ R LDH+L GPPG GKTTLANI+A+ + Sbjct: 5 LEIRPTSFEGFIGQKKIVQTLKVLIESSQKRKKTLDHVLFHGPPGTGKTTLANIIASMVN 64 Query: 81 VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140 ++ GP+LEK D+ AML N+ V+FIDEIH ++ +EE+LY AME++ +D+ IG Sbjct: 65 TKIKYVQGPLLEKKADVLAMLANITKDSVIFIDEIHGINKNIEELLYSAMEEFVIDLQIG 124 Query: 141 EGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM 200 + +++ LP FTLIGA+T+ +++PL++RFG + ++ Y D++ I+ SA+ + Sbjct: 125 VDGENKIMRMKLPNFTLIGASTKLSQISTPLQNRFGFIAKITEYSNEDMRQIIYNSAKKL 184 Query: 201 GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEG 260 + + + TPRIAN LL+R+RDFA V++ I +I + D + V G Sbjct: 185 HINLGASEIDYIVNFTNKTPRIANNLLKRIRDFALVQNIEKIDINIINKTFDSIGVYKNG 244 Query: 261 FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 + L + F V LD L + E R+TI ++EP L+++ ++++T RGR Sbjct: 245 LSETSVEYLKILHYIFKDKSVALDVLVGILKESRQTIIHIIEPLLVEKFYIEKTIRGRRI 304 Query: 321 TTRAWNHF 328 T + + Sbjct: 305 TQQGVWYL 312 >UniRef50_Q1JL73 DNA polymerase III subunit gamma/tau n=74 Tax=Streptococcaceae RepID=Q1JL73_STRPC Length = 561 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 110/303 (36%), Gaps = 30/303 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R R + +E VGQ + + ++ +++ K+ L GP G GKT+ A I Sbjct: 2 YQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKIS----HAYLFSGPRGTGKTSAAKIF 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A M + P + D+ +TN DV+ ID + + + ++ Y P+ Sbjct: 58 AKAMNCPNQVDGEPCNQC--DICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPS 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLP--PFTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ P I ATT + + + R + Sbjct: 116 RATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFE-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + ++ ++ GL D +ARRA G R A +L + + D Sbjct: 175 KAIKQKAIREHLAWVLDKEGLAYEVDALNLIARRAEGGMRDALSILDQALSLS---PDNQ 231 Query: 242 ISADIAAQALDMLNVDAEGF------DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 ++ IA + +++ A G + L A+ + G + R+ Sbjct: 232 VTIAIAEEITGSISILALGDYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRD 291 Query: 296 TIE 298 + Sbjct: 292 LLV 294 >UniRef50_A2A0B1 DNA polymerase III subunit gamma/tau n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A0B1_9SPHI Length = 575 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 117/323 (36%), Gaps = 30/323 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + + ++ IK+ +L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPATFDTVVGQSHITTTLKNAIKSNQL----AQAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAM- 130 + T + N +V +D + + +V++V YP Sbjct: 62 TINCLTPTEDFEACGTC--ESCVSFQNQGSMNVYELDAASSNSVDDIRNLVDQVRYPPQS 119 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 ++ I + A ++ PP I ATT + + R I + Sbjct: 120 GKRKVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFD-FK 178 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 +V D+ ++ A+ +E D +A++A G R A L + F+ D I Sbjct: 179 RIEVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGLRDALSLFDLITTFSA---DRHI 235 Query: 243 SADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 + + L +L+ D + D L+L D+ A +G + Sbjct: 236 TYQSVVKNLHILDHDYYFKITDALLAQDMPLVLLYFDEILRKGFDGHIFIAGLGAHLRNV 295 Query: 298 EDVLEPYLIQQGFLQRTPRGRMA 320 +P ++ + + R A Sbjct: 296 MMCKDPATVKLLEVSEKVKQRFA 318 >UniRef50_A8ZU40 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZU40_DESOH Length = 570 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 31/304 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ EE V Q QV + I + ++ +L GP G GKTT+A Sbjct: 1 MSYLVLARKYRPQTFEEVVEQQQVTRTLTNAIASGRV----AHAILFTGPRGTGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A M T P + + DV ID + ++ + V + Sbjct: 57 ILAKAMNCEKGPTPTPCCACRS--CLEIASGNATDVFEIDGASNNSVDQVRELRGNVKFM 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ I + G A ++ PP ATT + + R Sbjct: 115 PAHSPYKIYIIDEVHMLSGPAFNALLKTLEEPPAHVMFFFATTEPHKIPVTILSRCQRHD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L F + L + + + +A A G+ R + LL +V A+ Sbjct: 175 -LSFVGIDPLVAHLETLCEKENIPIEKKSLELIAHEAGGSVRDSLSLLDQVMSSAQ---- 229 Query: 240 GTISADIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNL-AAAIGEE 293 G +S ++ +AL +++ + + D L ++D + G + A +G Sbjct: 230 GPVSHEMVLEALGIIDREVIFGLSGAVLAGDMTGALDILDTVYRGGHDIKRFYAEMLGHF 289 Query: 294 RETI 297 R+ + Sbjct: 290 RDLL 293 >UniRef50_B9Z526 DNA polymerase III, subunits gamma and tau n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z526_9NEIS Length = 657 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 110/368 (29%), Gaps = 59/368 (16%) Query: 6 RLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPG 65 +L T+ V R RPK + VGQ V + + +L L+ G G Sbjct: 14 QLELESATMTYQVLARKWRPKRFADLVGQEHVVRALTNALAGERLH----HAYLLTGTRG 69 Query: 66 LGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSP 120 +GKTT+A I+A + + P E + + D+L ID I + Sbjct: 70 VGKTTIARILAKSLNCEAGVGAEPCGECSA--CRQIDAGRFVDLLEIDAASNTGIDNIRE 127 Query: 121 VVEEVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPL 171 V+E Y P Y++ I + A ++ PP I ATT + + Sbjct: 128 VLENAQYAPTSGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTV 187 Query: 172 RDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVR 231 R L + ++R + + R A G+ R A LL + Sbjct: 188 LSRCLQF-SLRNMTPQQVAGHLARVLDVEQVSYEAPALALLGRAAAGSMRDALSLLDQAI 246 Query: 232 DFAEVKHDGTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNL 286 + G + L ++ E D L+A VG D+ Sbjct: 247 AY----GVGKVEEGGVRAMLGAVDRAYLYTLLEALAEADGPRLIAEAKALAERGVGFDSA 302 Query: 287 ------------------AAAIGEERETIEDVLEPYLIQQGFLQRTPRGR----MATTRA 324 AA G++ + E L + P Sbjct: 303 LGELALLLQQIALAQTVPAAITGDDPD-----AEAVLALAQLI--APEDVQLYYQIAIHG 355 Query: 325 WNHFGITP 332 + P Sbjct: 356 RKDLALAP 363 >UniRef50_Q1YTB0 DNA polymerase III subunits gamma and tau n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB0_9GAMM Length = 647 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 56/353 (15%), Positives = 108/353 (30%), Gaps = 45/353 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP++ E GQ V + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPRIFAEMAGQQHVLQALINALDHDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I++ + + +S P E + + D++ +D + + +++ V Y Sbjct: 57 ILSKCLNCEVGVSSVPCGECSS--CTEIGEGRFIDLIEVDAASRTGVDDMRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ ++ AA ++ PP + ATT L + R Sbjct: 115 PSRGRYKIYLIDEVHMLSKSSFAALLKTLEEPPPHVKFLFATTDPQKLPITVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + + +AR A G+ R A L + Sbjct: 175 -LKNLSAERITEHLQFVLGEEQVPFEEAALWSLARAADGSMRDALSLTDQAIGH----GG 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLA------- 287 G ++ + L + + LLA I + D Sbjct: 230 GQVNEGEVSAMLGTIERSYVVDICQALISGSGTELLAAIGRMAEQAPDYDAALTDILSVW 289 Query: 288 ---AAIGEERETIEDVLEPYLIQQGFLQRTPR-----GRMATTRAWNHFGITP 332 A + E ++ + Y R ++P Sbjct: 290 HQVAIVQTVPEALDKGVANYTELLALAAAVSREDTQLFYQICLLGRKDLQLSP 342 >UniRef50_C5AFH6 DNA polymerase III, subunits gamma and tau n=1 Tax=Burkholderia glumae BGR1 RepID=C5AFH6_BURGB Length = 861 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 105/321 (32%), Gaps = 41/321 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RPK VGQ V + + +L L G G+GKTTL+ Sbjct: 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLH----HAYLFTGTRGVGKTTLSR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + TS P + D + +D + ++ ++E +Y Sbjct: 57 IFAKALNCETGVTSQPCGVCRA--CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA 114 Query: 129 AME-DYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 ++ +++ ++ A ++ PP I ATT + + R Sbjct: 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + R + +AR A+G+ R A L + ++ Sbjct: 175 -LKQMPAGHIVMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLA-----AAIGEER 294 ++ + L L D+ ++ ++D G + LA A Sbjct: 230 NEVTEAAVSGMLGAL----------DQTYMVRLLDAIASSD-GPEILAIADEMALRSLSF 278 Query: 295 ETIEDVLEPYLIQQGFLQRTP 315 T L L + + Q P Sbjct: 279 STALQDLAGLLHRIAWAQFAP 299 >UniRef50_B8F323 DNA polymerase III subunits gamma and tau n=4 Tax=Pasteurellaceae RepID=B8F323_HAEPS Length = 670 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 115/321 (35%), Gaps = 33/321 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E VGQ V S +E ++ +L L G G+GKT++A Sbjct: 1 MSYQVLARKWRPQRFSEVVGQQHVLSALENGLREGRLH----HAYLFSGTRGVGKTSIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + ++ P + A + D++ ID + +++ V Y Sbjct: 57 LFAKGLNCETGISADPCGQCAN--CKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + +++ ++ A ++ PP + ATT L + R Sbjct: 115 PTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPITILSRCMQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + +Q + + ++A+ A+G+ R A L + + V Sbjct: 174 HLRALEQSQIQQHLEFILTQEQIPYELSALAKLAKAAQGSIRDALSLTDQAIAVSNVN-- 231 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 I+ I +Q L +++ + D + +AVI V + Sbjct: 232 --ITLPIVSQMLGLIDDHQPLELVQALANADGEKAMAVIQSVAEKGVDWQ---QLFSDTA 286 Query: 295 ETIEDVLEPYLIQQGFLQRTP 315 ET+ + L++ + TP Sbjct: 287 ETLHQIAMLQLLKHAHQEETP 307 >UniRef50_B3PMK4 Holliday junction DNA helicase RuvB n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMK4_MYCA5 Length = 317 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 172/307 (56%) Query: 22 AIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGV 81 R K +++GQ ++ +++ I +A +DHLL +GPPGLGKT+LA I+A E Sbjct: 5 EFRVKSFSDFIGQEKITKTLKVMIASASKLKRPIDHLLFYGPPGLGKTSLAKIIATETKR 64 Query: 82 NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGE 141 N+ GP+LEK D+ +L +++ +D++FIDE+H ++ +EE+LY A+ED +DI +G Sbjct: 65 NIVYAQGPLLEKKSDILTLLNSIKENDIIFIDEVHGINHNLEELLYSALEDGVVDIPLGV 124 Query: 142 GPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMG 201 R +++ L F+LI ATT+ L+ PL+DRFG + +L Y ++ I++ SA Sbjct: 125 EGDRRIMRMKLKSFSLIAATTKFNLLSQPLKDRFGFIGKLTPYTDEEIIKIITNSAARNN 184 Query: 202 LEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGF 261 + + + ++A +R TPR+AN LL+RV DFA + I+ + +A + + G Sbjct: 185 IPIDEKAIKKIAEHSRQTPRVANNLLKRVYDFAVYEKKDLITEKLVKKAFKFIGIFQYGL 244 Query: 262 DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMAT 321 Y + L + F LD ++ I +E+ TI + +EP L+ ++++ RGR T Sbjct: 245 VYSQIEYLRVLHQVFNDSFGSLDAISGIISDEKSTIINEIEPLLLVYKLIEKSSRGRKIT 304 Query: 322 TRAWNHF 328 + Sbjct: 305 ANGIRYL 311 >UniRef50_C9XIC8 DNA polymerase III subunit gamma/tau n=5 Tax=Clostridium RepID=C9XIC8_CLODC Length = 545 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 109/298 (36%), Gaps = 30/298 (10%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 RA RP+ E+ +GQ + ++ I + + L G G GKT+ A I + Sbjct: 5 LYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIG----HAYLFCGTRGTGKTSTAKIFSRA 60 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMED 132 + + P E ++ + DV+ ID + + + E V Y PA Sbjct: 61 VNCLNKINEEPCNEC--EICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAK 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + + R + Sbjct: 119 YKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYD-FKRV 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V D+ + + G+++ D +AR ++G R A +L + F + I Sbjct: 178 TVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSF----GESKIDY 233 Query: 245 DIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 + + +N++ D K L ++++F + NL + + + Sbjct: 234 KDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNL 291 >UniRef50_A3WNZ0 DNA polymerase III, gamma/tau subunits n=1 Tax=Idiomarina baltica OS145 RepID=A3WNZ0_9GAMM Length = 640 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 107/316 (33%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP ++ VGQ V + ++ +L L G G+GKTT+A Sbjct: 1 MAYQVLARKWRPMQFDQVVGQQHVLEPLFHALEQQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + ++ P E + D++ +D + +++ V Y Sbjct: 57 ILAKALNCERGVSARPCGECPS--CEEIEQGRFVDLIEVDAASRTKVEDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + + +A+ A+G+ R A L + + Sbjct: 175 -LRALDREQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIA----QGQ 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + + + L L ++ LL A+ G + ++ + I + Sbjct: 230 GKVQVESVQRMLGHL-----ADAHVHP-LLDALASGDSGSVFEKFDELKSLVPDPLMILN 283 Query: 300 VLEPYLIQQGFLQRTP 315 L+ + + +Q+ P Sbjct: 284 ELQRVIHRIALIQQIP 299 >UniRef50_Q1LLG8 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=15 Tax=Betaproteobacteria RepID=Q1LLG8_RALME Length = 795 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 111/322 (34%), Gaps = 38/322 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ VGQ V + ++ +L L G G+GKTTL+ Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLH----HAYLFTGTRGVGKTTLSR 56 Query: 74 IVANEMGVNLRTTSG-----PVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVE 123 I+A + +G P + + + D + +D + ++ +++ Sbjct: 57 ILAKALNCTGPDGNGGITAQPCGQCKA--CTEIDSGRFVDYIEMDAASNRGVDEMAQLLD 114 Query: 124 EVLY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 + +Y P +++ ++ A ++ PP I ATT + + R Sbjct: 115 KAIYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L+ + + G+ +A+ A G+ R A L + ++ Sbjct: 175 CLQFN-LKQMPPGHIVSHLDHILAQEGISHDGSALRLLAQAAHGSMRDALSLTDQAIAYS 233 Query: 235 EVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL-DNLAAAIGEE 293 G +S + L + +LL A+ + +G+ D++A Sbjct: 234 A----GQVSEEAVRGMLGAI------DQSYLVQLLDALAAEDGATMLGIADSMADRSLSF 283 Query: 294 RETIEDVLEPYLIQQGFLQRTP 315 ++D L L + Q P Sbjct: 284 AGALQD-LGSLLHKVALAQAVP 304 >UniRef50_Q2JLX3 DNA polymerase III, subunits gamma and tau n=2 Tax=Synechococcus RepID=Q2JLX3_SYNJB Length = 779 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 117/349 (33%), Gaps = 53/349 (15%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 T + RP+ + VGQ V + I+ ++ L GP G GKT+ Sbjct: 2 ATAGNYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRV----APAYLFCGPRGTGKTS 57 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV 125 A I+A + T P + +T DVL ID + + ++E Sbjct: 58 SARILAKSLNCEQGPTPDPCQACSQ--CRAITAGASLDVLEIDAASNTGVDNIRELIERA 115 Query: 126 LY-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 + P Y++ ++ A ++ PP + ATT + + R Sbjct: 116 QFAPVNSRYKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQ 175 Query: 177 IVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 + D+ + + A G+ ++ + VA+ ++G R A RLL ++ Sbjct: 176 RFD-FRRIPLDDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLL--- 231 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 +G+I+ + + + + ++ A + + R+ Sbjct: 232 --EGSITPEAVWDLVGGIPEQQLLALMD---------------ALLAQDVQAVLSQTRQL 274 Query: 297 IEDVLEPY--------LIQQGFLQRT-PRGRMA---TTRAWNHFGITPP 333 +E EP L + L +T P+ R T W P Sbjct: 275 LERGKEPLALLQNLVALYRDLLLVKTAPQQRELVAVTDSTWAALQQRAP 323 >UniRef50_C4V121 DNA polymerase III, subunits gamma and tau n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V121_9FIRM Length = 615 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 64/325 (19%), Positives = 117/325 (36%), Gaps = 43/325 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ + + + + ++ L GP G GKT+ A Sbjct: 1 MAYVALYRRWRPERFADLVGQEHISRTLSRAVTSGQIS----HAYLFTGPRGTGKTSTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + T P D +++ DV ID I + + E V + Sbjct: 57 ILARALNCAEGPTLTPCGHC--DSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFA 114 Query: 129 AMED-YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + E A ++ PP I ATT + + ++ R Sbjct: 115 PTEGLYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V ++ + + G+E +D +A +A G R A +L + AE Sbjct: 175 -FHRITVTEICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAE---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 GT++A+ +AL ++ A I + D AA I + + +++ Sbjct: 230 GTLTAERVQEALGLVG--------------RAWIRQMAEQIAARDA-AALITQLSQLLQN 274 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRA 324 E ++Q ++ R Sbjct: 275 GRE---LRQVLVELAQYFRSLMIAG 296 >UniRef50_C1D5D8 DnaX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5D8_LARHH Length = 769 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 90/256 (35%), Gaps = 25/256 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + VGQ V + + +L L+ G G+GKTT+A Sbjct: 1 MSYQVLARKWRPRRFADLVGQEHVVRALSNALAGQRLH----HAYLLTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + + P E A + D+L ID I + V+E Y Sbjct: 57 ILAKSLNCERGVGAEPCGECAA--CRQIDAGRFVDLLEIDAASNTGIDNIREVIENAQYA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + A ++ PP I ATT + + R Sbjct: 115 PTAGRYKVYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFA 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + ++ G+E +AR A G+ R A LL + + + Sbjct: 175 -LRNMTPQQVSGHLAHVLATEGIEFESPALALLARAASGSMRDALSLLDQAIAY----GE 229 Query: 240 GTISADIAAQALDMLN 255 G + D L ++ Sbjct: 230 GVVREDGVRAMLGAVD 245 >UniRef50_A6VYC4 DNA polymerase III, subunits gamma and tau n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VYC4_MARMS Length = 752 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 26/257 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E GQ V + ++ +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPQTFLEMAGQDHVLQALVNALRQQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY 127 I A + S P D + D++ +D + ++E V Y Sbjct: 57 IFAKCLNCETNGISPEPCGTC--DSCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQY 114 Query: 128 -PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 APTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQF 174 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 L+ + + + ++ + A G+ R A L + F Sbjct: 175 N-LKNMSPQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIAF----G 229 Query: 239 DGTISADIAAQALDMLN 255 +GTIS L ++N Sbjct: 230 NGTISESGVTAMLGLVN 246 >UniRef50_A6LDQ5 DNA polymerase III subunit gamma/tau n=19 Tax=Bacteroidales RepID=A6LDQ5_PARD8 Length = 586 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 108/303 (35%), Gaps = 30/303 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V+ R RP VGQ + + ++ I++ KL L GP G+GKT+ A I Sbjct: 4 YIVSARKYRPSTFRSVVGQKSLTTTLKNAIQSNKL----AHAYLFCGPRGVGKTSCARIF 59 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + T G + +++ +D + + ++++V P Sbjct: 60 AKTINCLNPTADGEACNAC-ESCRAFNEQRSYNIHELDAASNNSVDDIRTLIDQVRIPPP 118 Query: 130 MEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y+ + ++ A ++ PP I ATT + + R I Sbjct: 119 IGKYKVFIIDEVHMLTTAAFNAFLKTLEEPPHHALFILATTEKHKVLPTILSRCQIYD-F 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + D+ + + G+ + +A++A G R A + +V F +G Sbjct: 178 SRISIADMVEHLQYVSSQEGVTAEPEALNVIAQKADGGMRDALSIFDQVVSFT----NGN 233 Query: 242 ISADIAAQALDMLNVDAEG------FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 I+ L++L+ + R LL + + G G + + G R+ Sbjct: 234 ITYQAVIDNLNVLDYEYYFRLTDAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRD 293 Query: 296 TIE 298 + Sbjct: 294 LLV 296 >UniRef50_Q6FAW7 DNA polymerase III, tau and gamma subunits (DNA elongation factor III) n=9 Tax=Acinetobacter RepID=Q6FAW7_ACIAD Length = 711 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 106/315 (33%), Gaps = 31/315 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ E VGQ V + ++ +L L G G+GKTT+A I+ Sbjct: 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLH----HAYLFTGTRGVGKTTIARIL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + TS P A + D++ ID + +++ V Y P Sbjct: 58 AKCLNCETGITSTPCEVCA--TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT 115 Query: 130 MEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 +++ ++ A ++ PP + ATT L + R L Sbjct: 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQF-TL 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 V ++ ++ +E D ++A A+G+ R A L + + G Sbjct: 175 RPLAVDEITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAY----GQGA 230 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 + + L ++ + L+LA+ L + + D L Sbjct: 231 VHHQDVKEMLGLI------DRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQL 284 Query: 302 EPYLIQQGFLQRTPR 316 L + LQ P Sbjct: 285 ISTLHELALLQYLPE 299 >UniRef50_B0N205 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N205_9FIRM Length = 640 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 106/292 (36%), Gaps = 33/292 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R+ RP+ E GQ + + ++ IK ++ L GP G GKTT+A Sbjct: 1 MSYKALYRSYRPQTFGEVAGQEHIVTTLKNAIKENRIS----HAYLFAGPRGTGKTTVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + + P + +T E DV+ ID + + ++++V Y Sbjct: 57 LLAKALNCT--GENPPCDQCPN--CKAITVGEHPDVIEIDAASNNGVDEVRDLIDKVKYA 112 Query: 128 PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I+ A ++ PP + ATT + + R Sbjct: 113 PINGKYKVYIIDEVHMMSTGAFNALLKTLEEPPAHIVFVLATTEPHKILPTIISRCQRFD 172 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + D+ + + + VA+ A G R A +L + + + Sbjct: 173 -FKKVENHDIISRLEYVLKSENKKYELSALESVAKLAEGGMRDALSILEQCLAY-----N 226 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNL 286 ++ + +L++D + D K +L +D G + + L Sbjct: 227 NELTVESVNMVYGLLSMDNKISFIKQLLSKDIKGVLTSLDNMLSGSIDIKRL 278 >UniRef50_C8W2P9 DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W2P9_DESAS Length = 527 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 30/314 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+L E +GQ + +E +K ++ L GP G GKT+ A Sbjct: 1 MAYRALYREYRPQLFAEIMGQRHIVDTLENALKNNRI----AHAYLFCGPRGTGKTSTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I+A + + P + + + DV+ ID I + + E V Sbjct: 57 ILAKALNCHQIKGVEPCNKCSS--CVSVAQGSAIDVIEIDAASNRGIDEIRDLKERVKFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I + E A ++ PP + ATT L + R Sbjct: 115 PTGGKYKVYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + + + +++S + + A G R A +L ++ F + Sbjct: 175 -FKSIGAEPMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITF---NNT 230 Query: 240 GTISADIAAQALDMLN--VDAEGFDYMDR----KLLLAVIDKFFGGPVGLDNLAAAIGEE 293 IS + L +N V +Y+ R L + + F G + Sbjct: 231 AEISEEDIHNLLGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCV 290 Query: 294 RETIEDVLEPYLIQ 307 R+ + +EP I+ Sbjct: 291 RDLLLQSIEPTAIK 304 >UniRef50_Q67TJ5 DNA polymerase III gamma and tau subunits n=1 Tax=Symbiobacterium thermophilum RepID=Q67TJ5_SYMTH Length = 570 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 120/338 (35%), Gaps = 48/338 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E VGQ + + I +L L+ GP G GKTT+A Sbjct: 1 MAHLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLH----HAYLLSGPRGTGKTTVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + P E + +T+ E D++ ID I + + ++V + Sbjct: 57 ILAKAVNCLNPQDGEPCNEC--EACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFA 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 +E Y++ I + A ++ PP + ATT L + R Sbjct: 115 PVELKYKVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 ++ + GL+ S + +AR A G R A LL +V +A + Sbjct: 175 -YRRLSADEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAA---E 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-----LDNLAAAIGEER 294 G I+ D+ L +D F +D LL G VG LD + A + R Sbjct: 231 GEITLDMTLAVLGTAPLDQ--FLALDGHLLR--------GDVGAALLWLDEMVRAGKDLR 280 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITP 332 + + D L + L + G+ Sbjct: 281 QLVRDYLAHL--RDLLLVK-------LEAGAQVLGLPA 309 >UniRef50_A4SMN2 DNA polymerase III, subunits gamma and tau n=2 Tax=Aeromonas RepID=A4SMN2_AERS4 Length = 865 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 109/316 (34%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + + +L L+ G G+GKTT+A Sbjct: 1 MSYQVLARKWRPHTFEQVVGQHHVLTALTNALDQGRLH----HAYLLSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + +S P D + D+L ID + +++ V Y Sbjct: 57 ILAKSLNCEQGISSHPCGVC--DTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + L +A+ A G+ R A L + + Sbjct: 174 HLKSLDQTQIAKQLECVLDQEAQPFEPRALLALAKAADGSMRDALSLTDQALAH----GN 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G++ + L L+ +LL A++ + + A +G + + + Sbjct: 230 GSVRLESVLAMLGTLDHRHL------HQLLEAILRQDAAATMAKITEIATLGPDFDQLHA 283 Query: 300 VLEPYLIQQGFLQRTP 315 LE L + Q P Sbjct: 284 ELEGLLHRVAMAQLLP 299 >UniRef50_D1N3S6 DNA polymerase III, subunits gamma and tau n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3S6_9BACT Length = 615 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 108/313 (34%), Gaps = 32/313 (10%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 V R RP+ + VGQ V +E I+ + L GP G+GKTTLA I Sbjct: 3 EYQVIARKWRPQRFGDVVGQQHVVRTLENAIRQQR----TAHAYLFVGPRGVGKTTLARI 58 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHR-----LSPVVEEVL-YP 128 A M P + + DV+ +D R + + E+VL P Sbjct: 59 FAKAMNCLDPQDGEPCCRC--ESCRAIAEERSLDVMEVDAASRNTTGDMRELAEDVLTQP 116 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + + ++ PP I ATT + + R Sbjct: 117 VGGRYKIYIIDEVHMLSKQAWNVLLKTVEEPPAHVKFIFATTEVHQVLPTIISRCQRFDL 176 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 L + + ++++D +AR A G R A LL ++ F D Sbjct: 177 L-PIPTRLITERLRLICDSEQVKINDSAIGAIARAAEGGMRDAQSLLDQMIAFFSQGDDT 235 Query: 241 TISADIAAQALDMLNVDAEGFDYMDRKLLLAV-IDKFFGGPVGLDNLAAAIGEERETIED 299 I+ + + DR L A+ + P + ++ + + + + +E Sbjct: 236 PITGEQVLSLFGL----------TDRTDLDALMVAMLRNAPGEVVSIVSRLARKGKNLET 285 Query: 300 VLEPYLIQQGFLQ 312 + + L +Q Sbjct: 286 LFDDLLEAMRAVQ 298 >UniRef50_A8RAJ4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAJ4_9FIRM Length = 593 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 97/287 (33%), Gaps = 35/287 (12%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 G + R RP +E GQ + ++ ++ K+ L GP G GKT+ Sbjct: 4 GCNMGYKALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKI----AHAYLFCGPRGTGKTS 59 Query: 71 LANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV 125 +A I A + + P L+ D + N D++ ID + + ++E+V Sbjct: 60 IAKIFAKVINCESKE-HKPCLQC--DNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKV 116 Query: 126 LY-PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 Y P Y++ I+ A I+ PP I ATT + + R Sbjct: 117 KYAPLKGKYKVYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQ 176 Query: 177 IVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 ++ + +E DD +A+ A G R A +L + +A Sbjct: 177 RFD-FTKVPKNEIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYAT- 234 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGL 283 I + + V ++ + F PV L Sbjct: 235 ---NHIELQHINEIYGITTV---------QEKMKLFHHIFNNEPVDL 269 >UniRef50_C7N1K9 DNA polymerase III, subunit gamma/tau n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1K9_SLAHD Length = 807 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 89/258 (34%), Gaps = 26/258 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + R RP+ ++ VGQ V ++ ++ + L GP G GKTT+A ++ Sbjct: 2 AEALYRKYRPQTFDDVVGQTHVERTLKNALQQDHVS----HAYLFCGPRGTGKTTMARLL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVV--EEVLYP 128 A + T P + ++ DV +D + + + P Sbjct: 58 AKALLCEHGPTPSPDGTC--EECQLIAEGAHPDVNELDAASRTGVDNVREEIIGRVQFAP 115 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + A ++ PP + TT + + R Sbjct: 116 TRGRYKIYIIDEVHMLTVPAFNALLKTLEEPPAHVVFVMCTTDPQKIPETILSRCQRFD- 174 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 ++ + + + +ARRA+G R A L ++ F G Sbjct: 175 FHRLSNEEIVSRLGAVCMAEDVPFEGEALDLIARRAQGGMRDALTALEQLIAF----GAG 230 Query: 241 TISADIAAQALDMLNVDA 258 ++ D+A AL L+V+ Sbjct: 231 NVTMDVANAALGSLDVND 248 >UniRef50_UPI000196BAD9 hypothetical protein CATMIT_00797 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD9 Length = 600 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 107/306 (34%), Gaps = 29/306 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ ++ GQ + + ++ I K+ L GP G GKTT+A Sbjct: 3 MAYKSLYRTYRPQTFKDVAGQEAIITTLKHAIDEKKI----AHAYLFCGPRGTGKTTVAK 58 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + P E + + N DV+ ID + + ++++V Y Sbjct: 59 LLAKAVNCTGNP--KPCGEC--ENCKQIENGTHPDVIEIDAASNNGVEEVRSLIDKVKYA 114 Query: 128 PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ I+ A ++ PP I ATT + + R Sbjct: 115 PTQGQYKVYIIDEVHMMSPGAFNALLKTLEEPPAHVIFILATTEPHKILPTIISRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 ++ + + G D +AR A G R A +L + + +D Sbjct: 175 -FTRLTDQEMVQRMQYVLKEEGKTYDDGSLELIARLANGGMRDALSILEQCLAY----ND 229 Query: 240 GTISADIAAQALDMLNVDAEG--FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 +S + ++++D + + K + + ++ + + + Sbjct: 230 DHLSINDIHTIYGIVSMDDKTNLLKVLLSKNMSESLKILDKMDKSGIDIKRLTFDLIDIL 289 Query: 298 EDVLEP 303 +D++ Sbjct: 290 KDIVVY 295 >UniRef50_A3YHQ6 DNA polymerase III subunits gamma and tau n=1 Tax=Marinomonas sp. MED121 RepID=A3YHQ6_9GAMM Length = 823 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 104/317 (32%), Gaps = 32/317 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E GQ V + +K +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPQNFIELAGQDHVLQALVNALKQQRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY 127 I A + S P + D++ +D + ++E V Y Sbjct: 57 IFAKCLNCETNGISPEPCGTCGS--CVEIAEGRFVDLIEVDAASRTKVEDTRELLENVQY 114 Query: 128 -PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 P +++ ++ A ++ PP + ATT L + R Sbjct: 115 TPTRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQF 174 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 L+ + + + L + G ++ + A G+ R A L + F Sbjct: 175 N-LKNMSPGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAF----G 229 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 +G IS L ++N LL A++ + L N A + I Sbjct: 230 NGHISETDVTSMLGLVN------QAQVVGLLDAIVQSDAANLLKLVNDLADYQPDFVAIC 283 Query: 299 DVLEPYLIQQGFLQRTP 315 L L + Q+ P Sbjct: 284 ASLLDLLHRIAIEQQVP 300 >UniRef50_A5D6B1 DNA polymerase III, gamma/tau subunits n=3 Tax=Peptococcaceae RepID=A5D6B1_PELTS Length = 558 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 109/310 (35%), Gaps = 31/310 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E +GQ + ++ ++A ++ + G G GKTT A Sbjct: 1 MTYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVG----HAYIFCGARGTGKTTAAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + R + P + + DV+ ID I + + E++ + Sbjct: 57 VLAKALNCTGREGAEPCNRC--ESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA Y++ I + E A ++ PP LI ATT + + R Sbjct: 115 PAAGRYRVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 D+ + A LE+ ++ +AR A G R A +L + F Sbjct: 175 -FRRIIPADIIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEG-----FDYMDRKLLLAVIDKFFGGPVGLDNLAAAI-GEE 293 ++ Q L + DA + L ++ + G L A + G Sbjct: 230 MKVTEAGVHQILGTVRTDALDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYL 289 Query: 294 RETIEDVLEP 303 R + + + P Sbjct: 290 RALLLEKISP 299 >UniRef50_C6MGX6 DNA polymerase III, subunits gamma and tau n=2 Tax=Betaproteobacteria RepID=C6MGX6_9PROT Length = 537 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 43/321 (13%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 V R RP+ E GQ V + ++ +L L+ G G+GKTT+A I+A Sbjct: 5 QVLARKWRPRNFTELTGQEHVVRALTNALEQNRLH----HAYLLTGTRGVGKTTIARILA 60 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAM 130 + T+ P + + D++ +D + + ++E LY P Sbjct: 61 KSLNCETGITATPCGTCT--TCVQIDSGSFIDLVELDAASNTQVDNMRELLENALYAPTC 118 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + A ++ PP I ATT + + R L+ Sbjct: 119 GRYKIYIIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDQQKIPITVLSRCLQFN-LK 177 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 P + + + + VAR A+G+ R A LL + F G I Sbjct: 178 QIPQPQITDHLKKILAQEKIPCDILSLQLVARAAQGSMRDALSLLDQAIAF----GAGKI 233 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE------T 296 L ++ D L ++D GL L+ A E Sbjct: 234 EEASVRDMLGII----------DHSYLFDLLDALTQ-KNGLKLLSLADEMEARCLSFDCA 282 Query: 297 IEDVLEPYLIQQGFLQRTPRG 317 ++D+ L + Q P+ Sbjct: 283 LQDLAV-ILHRIALAQAIPQA 302 >UniRef50_A9IMY3 DNA polymerase III gamma and tau subunit n=2 Tax=Bartonella RepID=A9IMY3_BART1 Length = 646 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 117/329 (35%), Gaps = 37/329 (11%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + + V R RP+ + +GQ + + + ++ ++ G G+ Sbjct: 1 MENIPVETAYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRI----AQAWMLTGIRGV 56 Query: 67 GKTTLANIVANEMGVNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFID-----EIHRLS 119 GKTT A I+A + + P L+ G+ + DV+ +D I + Sbjct: 57 GKTTTARILARALNYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIR 116 Query: 120 PVVEEVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSP 170 ++E++ Y P Y++ I + + ++ PP I ATT + Sbjct: 117 EIIEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPIT 176 Query: 171 LRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 + R L + L + + A++ +E+ D +AR A G+ R A + + Sbjct: 177 ILSRCQRFD-LRRIEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQA 235 Query: 231 RDFAEVKHDGTISADIAAQALDMLNVDAEGFDY---MDRKLLLAVIDKFFGGPVGLDNLA 287 + +G +SA L + + + M ++ A+ + G D L Sbjct: 236 IAHS----NGNVSAAEVRTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPL- 290 Query: 288 AAIGEERETIEDVLEPYLIQQGFLQRTPR 316 TI L + L+ TP Sbjct: 291 --------TILTELADFNHLVTRLRFTPE 311 >UniRef50_Q1IQ74 DNA polymerase III, subunits gamma and tau n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQ74_ACIBL Length = 632 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 65/363 (17%), Positives = 123/363 (33%), Gaps = 54/363 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E +GQ V ++ I+ ++ + G G+GKTT+A Sbjct: 1 MSYQVLARKYRPQKFSEVIGQDHVTRTLKNAIEQQRI----AHGYIFSGHRGIGKTTIAR 56 Query: 74 IVANEMGVNLR--TTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 I+A + S P D + + DV+ ID I + + E Sbjct: 57 ILAMALNCQSADHPVSEPCGVC--DSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAAR 114 Query: 127 Y-PAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 Y PA + +++ I+ A ++ PP + ATT + +R R Sbjct: 115 YRPARDRFKIYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQH 174 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 + D+ + A G+ DD +A G+ R A ++ + + Sbjct: 175 F-SFHAVKFDDIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQ 233 Query: 238 HD--------GTISADIAAQALD----------MLNVDAEGFD-----YMDRKLLLAVID 274 GT+S+D+ ++ + +D + + ++ + + + Sbjct: 234 LKTDDVRGLMGTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRN 293 Query: 275 KFFGGPVGLDN-LAAAIGEERETIEDVLEPYLIQQGFLQRT-PRGRMATTRAWNHFGITP 332 G D+ L +ERE + V E F + R R + G Sbjct: 294 AMVAKVAGKDSALLQISSDERERVARVAE------QFSEEDLARFLQIMLRTHSDLGYKQ 347 Query: 333 PEM 335 + Sbjct: 348 EQR 350 >UniRef50_C8PYL7 DNA polymerase III subunit tau n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYL7_9GAMM Length = 697 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 99/296 (33%), Gaps = 30/296 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RPK E +GQ V + I +L L G G+GKTT+A I+ Sbjct: 2 YQVLARKYRPKNFHELLGQEHVSKALINAIHNQRLH----HAYLFTGTRGVGKTTIARIL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 A + TS P + + + D++ ID + +++ V Y P Sbjct: 58 AKCLNCETGVTSEPCGVCG--VCQSIDSGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT 115 Query: 130 MEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ ++ A ++ PP + ATT L + R L Sbjct: 116 QGRYKVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFV-L 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 L + + D +++ A+G+ R A L + F +G Sbjct: 175 RPLPQVALAEYLGTILNKEQISYESDALWQLSSSAKGSVRDALSLTDQAIAF----GNGN 230 Query: 242 ISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 ++ ++ Q L +++ + + L I V + + E Sbjct: 231 VTDEVIRQMLGLIDQADVIAILANIYQQNTQQLTQSIQLLREQVVDAKAVFDRLAE 286 >UniRef50_A6GQQ4 AAA ATPase, central region n=1 Tax=Limnobacter sp. MED105 RepID=A6GQQ4_9BURK Length = 586 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 27/294 (9%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 R RP+ + VGQ V + + +L L G G+GKTT+A I+A Sbjct: 7 QALARKWRPRDFDSLVGQAHVVKALSHALDNQRLH----HAYLFTGTRGVGKTTIARILA 62 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAM 130 + + P + ++ D+L +D + + ++E +Y P Sbjct: 63 RAVNCEQGISRTPCGKCQA--CVEISQGRFVDLLEVDAATNTRVDEMRALLENAMYAPTA 120 Query: 131 EDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ ++ A ++ PP I ATT + + + R L Sbjct: 121 GRYKVYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFA-LR 179 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 L ++ + +A+ ARG+ R A L + ++ G + Sbjct: 180 QLPPDQLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSA----GHV 235 Query: 243 SADIAAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 + D L ++ V + + + A+++ A + E Sbjct: 236 TEDTVRTMLGAIDQQVVHQLLQALAQGDGKALLELSNALAAASAPFGAILDELA 289 >UniRef50_A8MKQ3 DNA polymerase III, subunits gamma and tau n=2 Tax=Alkaliphilus RepID=A8MKQ3_ALKOO Length = 563 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 109/304 (35%), Gaps = 30/304 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK+ E+ +GQ QV + ++ I ++ + L G G GKT+ A Sbjct: 1 MSYKALYRRFRPKVFEDVIGQDQVITILKNQISSSNI----AHAYLFTGTRGTGKTSTAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + + P + ++ + DV+ ID + + + E V YP Sbjct: 57 IFARAVNCLSAEDANPCNQC--EVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYP 114 Query: 129 AM-EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 Y++ I + A ++ PP I ATT + + + R Sbjct: 115 PSKGKYKIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ D+ + +G++ ++ +A + G R A +L + + E Sbjct: 175 -FKPVRINDIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTE---- 229 Query: 240 GTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 T++ L M+N + + D +L +I+ L I Sbjct: 230 DTLTYTNVVNILGMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHF 289 Query: 295 ETIE 298 +I Sbjct: 290 RSIL 293 >UniRef50_C1ZCQ4 DNA polymerase III, subunit gamma/tau n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCQ4_PLALI Length = 682 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 107/328 (32%), Gaps = 31/328 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ E VGQ ++ + I L G L G G+GKT++A I Sbjct: 6 YTVLARRFRPQTFSEVVGQDRIAQTLRNAI----LEGRVAHAYLFTGARGVGKTSMARIF 61 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAM 130 A + + P ++ ++ + DV ID I + + V +M Sbjct: 62 AKALNCPNAVEAVPCNTC--EICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSM 119 Query: 131 E-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + E A ++ PP I TT L + R Sbjct: 120 RTRYKVYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFD-F 178 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + + A G ++ D+ V+RRA G+ R + L +V F Sbjct: 179 GTVNIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQH---- 234 Query: 242 ISADIAAQALDMLNVDA------EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 ++ + L + D D + L A+ G I R+ Sbjct: 235 VTVADVHRLLGTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRD 294 Query: 296 TIEDVLEPYLIQQGFLQRTPRGRMATTR 323 + I + R R+ T Sbjct: 295 LMVTAAGVKGIALLGATESSRSRVETQA 322 >UniRef50_A6DLE8 DNA polymerase III, gamma and tau subunits n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE8_9BACT Length = 890 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 104/327 (31%), Gaps = 33/327 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ ++ GQ + S + I+ ++ + G G+GKTT A Sbjct: 1 MTYQVLARKWRPQTFDDLAGQDHITSTLTNAIRNQRVG----HAYIFVGTRGIGKTTSAR 56 Query: 74 IVANEMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY 127 I A + P + +T DV+ ID + + + E Y Sbjct: 57 IFAKALNCETPRADLNPCGQCTN--CTEITQGSSIDVIEIDGASNNSVDDIRQIREGAQY 114 Query: 128 -PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 PA Y+ + ++ A ++ PP + ATT + + R + Sbjct: 115 TPARCPYKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRL 174 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 + L+ + + + + D ++R A G R +L ++ F Sbjct: 175 E-LKPIPRNVIAGRLKHICETENVAIEDSAINAISRTANGGMRDGLSILDQMISFCS--G 231 Query: 239 DGTISADIAAQALDMLNVDAEGF--DYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 + IS M + + + + A+I+ N+ E + Sbjct: 232 NEIISEQDVIDVFGMSSSNELKLIASAILQNQAPALIEAIDTLAKAARNMEQLYSELFQL 291 Query: 297 IEDVLEPYLIQQGFLQRTPRGRMATTR 323 DV L+ + R Sbjct: 292 FRDV-------MILLESPQQARSILDL 311 >UniRef50_Q3A8S0 Putative DNA polymerase III, gamma/tau subunits n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8S0_CARHZ Length = 511 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 103/311 (33%), Gaps = 41/311 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RPK E VGQ + ++ + ++ L GP G GKTT A ++ Sbjct: 2 YLALYRKWRPKTFSEIVGQETIVKILKNAVATMQV----AHAYLFSGPRGTGKTTTAKVL 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + P + + + N +V ID I + + E + PA Sbjct: 58 AKAVNCEHPVEGEPCNQCPSCI--GINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPA 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + E A ++ PP I ATT + + R Sbjct: 116 QGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + A L+ + +A + G R A L+ ++ F + Sbjct: 175 KRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVF-----NPK 229 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 I+ + + L ++ + +L +I I E E +E L Sbjct: 230 ITVEDTLKVLGFVS----------WRKILELISAIRENNQ-----LKIINEIAEVVERGL 274 Query: 302 EPYLIQQGFLQ 312 + L Q LQ Sbjct: 275 DVKLFVQQILQ 285 >UniRef50_Q39Q40 DNA polymerase III, subunits gamma and tau n=7 Tax=Desulfuromonadales RepID=Q39Q40_GEOMG Length = 582 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 105/302 (34%), Gaps = 48/302 (15%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + GQ V ++ I + ++ L G G+GKT+ A Sbjct: 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRI----AHAFLFTGARGVGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + + P +T DVL ID + + + E V Y Sbjct: 57 ILAKALTCEQGMSPEPCNVCPA--CTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYL 114 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y+ + ++ A ++ PP I ATT + + R Sbjct: 115 PSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + G+ +SD VAR+ G+ R + +L +V F Sbjct: 175 -FRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFC----G 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 + + L ++ DR+LL LD AA G + T+ D Sbjct: 230 DQVRDEEVVSLLGVV----------DRRLL-------------LDATAAVFGRDTRTVLD 266 Query: 300 VL 301 ++ Sbjct: 267 IV 268 >UniRef50_C9RAG1 DNA polymerase III, subunits gamma and tau n=1 Tax=Ammonifex degensii KC4 RepID=C9RAG1_AMMDK Length = 427 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 108/320 (33%), Gaps = 36/320 (11%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 E RA RP+ + VGQ V + + ++ L GP G GKT+ A I Sbjct: 3 EEQALYRAWRPQQFAQVVGQAHVTRTLRNALAMGRI----AHAYLFAGPRGTGKTSTARI 58 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-P 128 +A + T P + DVL ID I + + E V P Sbjct: 59 LAKALNCLQGPTPVPCDTCPQ--CLSIMEGTSLDVLEIDAASRRGIDEMRELRERVRLSP 116 Query: 129 AMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ I + E A ++ PP I ATT + + R Sbjct: 117 VHSRYKVYIIDEAHMLTSEAANALLKTLEEPPPQVVFILATTEPHKIPVTILSRCQRFD- 175 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 ++ ++R A +++ + +A+ A G+ R A LL + +AE G Sbjct: 176 FRRLPTALIEEHLARVAETFPVKVEREALRLLAQAAEGSMRDALSLLDQALAWAE----G 231 Query: 241 TISADIAAQALDMLNVDAEG-----FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 + A A L + A D L ++++ L+ R+ Sbjct: 232 ELRAIDVADLLGKVPSQALEEMLTYLQKGDLAGALRLVNEIEERGKDLNLF------VRD 285 Query: 296 TIEDVLEPYLIQQGFLQRTP 315 I + E L ++ P Sbjct: 286 LILRLREEILRHLREERKAP 305 >UniRef50_Q1Q394 Similar to DNA polymerase III subunit gamma/tau n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q394_9BACT Length = 558 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 25/259 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + VGQ + + I+ ++ L GP G+GKT+ A Sbjct: 1 MSYVVLARRYRPQTFSDIVGQAPIVKTLGNAIRTDRV----AHAYLFAGPRGVGKTSTAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I++ + T P ++ ++ DVL ID I + + + V Sbjct: 57 ILSKALNCVNGPTDTPCNVC--NICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFA 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ I + E A ++ PP I ATT A L ++ R Sbjct: 115 PSRARYRIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + V D++ + + G ++ +A+ A+G R + +L ++ F D Sbjct: 175 -FKNISVNDIEKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFC----D 229 Query: 240 GTISADIAAQALDMLNVDA 258 +++ L ++ D Sbjct: 230 DNVTSADVNYVLGYIDDDK 248 >UniRef50_A9HZ16 DNA polymerase III subunit Tau n=6 Tax=Bordetella RepID=A9HZ16_BORPD Length = 736 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 105/295 (35%), Gaps = 36/295 (12%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 ++ V R RP+ + VGQ V + + + +L L G G+GKTTL Sbjct: 26 PSMTYLVLARKWRPRSFDTLVGQDHVVRALTHALDSQRLH----HAWLFTGTRGVGKTTL 81 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 + I+A + TS P + + D L +D + ++ ++E+ + Sbjct: 82 SRILAKSLNCETGITSKPCGQCRA--CTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAV 139 Query: 127 Y-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 Y P Y++ ++ G A ++ PP I ATT + + R Sbjct: 140 YAPGAGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 199 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 L+ + + + +A+ A G+ R A L + ++ Sbjct: 200 FN-LKQMPPDAIVGHLQAVLGDEAVACELPALRLIAQAAGGSMRDALSLTDQAIAYSA-- 256 Query: 238 HDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPV-GLDNLAAAIG 291 G ++ D L + D++ L+ +++ G G+ +A + Sbjct: 257 --GNLTEDAVRGMLGTI----------DQRHLVRLLEALPAGDATGVLAVADELS 299 >UniRef50_Q3J800 DNA-directed DNA polymerase n=2 Tax=Nitrosococcus oceani RepID=Q3J800_NITOC Length = 529 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 110/331 (33%), Gaps = 33/331 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ + VGQ V + + +L L G G+GKTTLA Sbjct: 1 MSYQVLARKWRPRDFTQVVGQEHVVRALTNGLDKGRLH----HAFLFTGTRGVGKTTLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + S P + + D++ +D + ++E V Y Sbjct: 57 ILAKSLNCKEGVRSTPCGKCQN--CQAIDGGNFVDLIEVDAASRTGVDDTRELLENVHYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ + A ++ PP + ATT L + R Sbjct: 115 PSRGHYKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + ++ + +AR A G+ R A LL + ++ Sbjct: 175 -LRRITPKAIAEHLNSILEAEEIPSESYALTLIARAAEGSVRDALSLLDQAINY----GR 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLA-----VIDKFFGGPVGLDNLAAAIGEER 294 G + L + +G ++ LLA +I+K ++++ + + Sbjct: 230 GQVMVADVRTMLGSI---EQGDLFILLDALLAGNGQGLIEKVREICAYSVDISSILADLL 286 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMATTRAW 325 ++ + L RG ++ A Sbjct: 287 HLLQRLALYQLAPDTVDDIDERGIFSSLAAR 317 >UniRef50_Q0A8H8 DNA polymerase III, tau subunit / DNA polymerase III, gamma subunit n=2 Tax=Gammaproteobacteria RepID=Q0A8H8_ALHEH Length = 648 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 108/321 (33%), Gaps = 37/321 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E GQ V + ++ +L L G G+GKTT+A Sbjct: 1 MAYQVLARKWRPRTFSEMAGQEHVLRALVNALEQQRLH----HAYLFTGTRGVGKTTVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P D L D++ +D + +++ V Y Sbjct: 57 ILAKCLNCEQGVTAEPCGTC--DACRELDAGRFVDLIEVDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ G A ++ PP + ATT L + R Sbjct: 115 PTRGRYKIYLIDEVHMLSGHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + G+ + + A+G+ R A LL + F Sbjct: 175 -LKNLPGGLVADYLHTVVEQEGVAAEPQALARLGQAAKGSMRDALSLLDQAIAF----GA 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE---ERET 296 G + D L ++ GF +L A+ G L + A + E + Sbjct: 230 GAVREDEVCAMLGTID---RGF------VLEALEALAAGDGRALLAVTARMSERAPDFSD 280 Query: 297 IEDVLEPYLIQQGFLQRTPRG 317 D L L Q LQ P Sbjct: 281 ALDELLHCLHQLALLQVVPEA 301 >UniRef50_C6ABP2 DNA polymerase III subunits gamma and tau n=9 Tax=Alphaproteobacteria RepID=C6ABP2_BARGA Length = 646 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 114/323 (35%), Gaps = 40/323 (12%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + + V R RP+ + +GQ + + + ++ ++ G G+ Sbjct: 1 MENVPVETAYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRI----AQAWMLTGIRGV 56 Query: 67 GKTTLANIVANEMGVNLRTTSGPV--LEKAGDLAAMLTNLEPHDVLFID-----EIHRLS 119 GKTT A I+A + + P L+ G+ + DV+ +D I + Sbjct: 57 GKTTTARILARALNYKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIR 116 Query: 120 PVVEEVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSP 170 ++E++ Y P Y++ I + + ++ PP I ATT + Sbjct: 117 EIIEQIRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPIT 176 Query: 171 LRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 + R L + L + + A++ +E+ D +AR A G+ R A + + Sbjct: 177 ILSRCQRFD-LRRIESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQA 235 Query: 231 RDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI 290 + +G ++A L + D+ ++ + + G V A+ Sbjct: 236 IAHS----NGNVNAIAVRTMLGLA----------DQARIIDLFEFIMKGDV-----VNAL 276 Query: 291 GEERETIEDVLEPYLIQQGFLQR 313 E R E +P I Sbjct: 277 HELRSQYEAGADPLTILTELADF 299 >UniRef50_C4G1W4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1W4_ABIDE Length = 522 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 24/258 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK +E GQ V + ++ IK K+ + G G GKT++A Sbjct: 1 MSYTALYRKFRPKGFDEVKGQDSVVTVLKNQIKHEKIG----HAYMFSGTRGTGKTSVAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I A + P + + DV+ ID + + V+EEV Y Sbjct: 57 IFAKAVNCENTKDGSPCGVC--ETCKKIGEGRTLDVIEIDAATNNGVDNMREVIEEVKYS 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 + Y++ I + A ++ PP I ATT + ++ R Sbjct: 115 PTDTKYKVYIIDEVHMLSSGAFNALLKTLEEPPEYAIFILATTEPHKVLPTIKSRCQKYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + G ++ +AR+ G+ R A LL + F+ D Sbjct: 175 -FRRISIETISDRLKELMDKEGNTYEEEALKFIARKGDGSMRDALSLLDQCLAFSF---D 230 Query: 240 GTISADIAAQALDMLNVD 257 ++ D L ++ D Sbjct: 231 EKLTYDKVLNVLGSVDTD 248 >UniRef50_A4XJ39 DNA polymerase III, subunits gamma and tau n=2 Tax=Clostridia RepID=A4XJ39_CALS8 Length = 535 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 116/312 (37%), Gaps = 33/312 (10%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RPK+ E+ V Q + ++ IK K+ + GP G GKTT A I+A Sbjct: 5 LYRKYRPKVFEDVVAQEHITKTLKNQIKQDKV----AHAYIFTGPRGTGKTTTAKIMARA 60 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPA-MED 132 + P E ++ + N + DVL ID ++ + + +EV YP M Sbjct: 61 VNCLNPKDGNPCNEC--EVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCK 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 ++ I + A ++ PP I ATT + + + R + Sbjct: 119 RRVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFD-FKRI 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V D+ + + + + D ++++A G R A +L R + + D IS Sbjct: 178 SVKDIYERLKKVVELEKISIDDQALYLISQKAEGALRDALTILERCVNTS----DEHISY 233 Query: 245 DIAAQALD-----MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 A L ++ D L V+++ + + ++ + E + + + Sbjct: 234 KFVANLLGVTSTEIVKEYLNAIVENDSNKGLRVVNRLWDEGMDVNT---FLEESIKILRN 290 Query: 300 VLEPYLIQQGFL 311 L L Q L Sbjct: 291 ALILRLGAQNVL 302 >UniRef50_C0QAH1 DnaX n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAH1_DESAH Length = 590 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 106/296 (35%), Gaps = 26/296 (8%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V RP+ +E VGQP V + ++ I L G +L+ GP G GKTT+A Sbjct: 1 MSYRVLALKYRPQTFDEVVGQPHVTTTLKNAI----LSGRVPHAILLTGPRGTGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A M T P +T DV ID + ++ + E V Y Sbjct: 57 ILAKAMNCETGPTPTPCNICK--TCTNITAGSAVDVFEIDGASNNSVDQVRELRENVAYM 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ I + A ++ PP I ATT + + R Sbjct: 115 PSSSKFKIYIIDEVHMLSMAAFNALLKTLEEPPDHVIFIFATTEVHKIPVTILSRCQRHD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + + A G +S + +A A G+ R + LL R+ + Sbjct: 175 -LGRISLAQISAHLMTLAAAEGFSISQESCDLLAGEADGSMRDSLSLLDRILGSQAQTSE 233 Query: 240 GTISADIA--AQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 T + L L + + + L A+I + L + +G + Sbjct: 234 QTSGPRAIDDDKILGTLGIIDKTLVF---DLADAIIQNRGADIIDLVDRIHTLGLD 286 >UniRef50_C8WB95 DNA polymerase III, subunits gamma and tau n=4 Tax=Zymomonas mobilis RepID=C8WB95_ZYMMN Length = 628 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 47/335 (14%) Query: 7 LISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGL 66 + S+ P V R RP+ + +GQ + + I +L L+ G G+ Sbjct: 2 VDSSSLATPYRVLARKYRPQKFSDLIGQDAMVRTLGNAIARDRL----AHAFLLTGVRGV 57 Query: 67 GKTTLANIVANEMGV-----NLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIH 116 GKT+ A ++A + + T P E + + DV+ +D + Sbjct: 58 GKTSTARLIAKALNCVGKDGHGGMTIDPCGEC--EACRAIAEGRHIDVVEMDAASHTGVD 115 Query: 117 RLSPVVEEVLYPAME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSL 167 + +VE V Y ++ +++ I + A ++ PP + ATT + Sbjct: 116 DIRDIVESVRYASVSARFKVYIIDEVHMLSKSAFNALLKTLEEPPAHVKFLFATTEINKV 175 Query: 168 TSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLL 227 + R L L S+ + +E ++ +A+ A G+ R +L Sbjct: 176 PITVLSRCQRFD-LRRISTATLTDYFSKVVQLEQVEAEEEALAMIAKAAEGSVRDGLSIL 234 Query: 228 RRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG--LDN 285 + + G+I A + L + DR ++ +++ G LD+ Sbjct: 235 DQAIAHSS----GSILAADVREMLGLS----------DRGVIKSLLVDLLEGKGDRVLDH 280 Query: 286 LAAA--IGEERETIEDVLEPYLIQQGFLQRTPRGR 318 + A +G E E + L + + R+ GR Sbjct: 281 VKAQYDLGVEPEALLHGLLQLIHA---ITRSKMGR 312 >UniRef50_A7VUJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUJ6_9CLOT Length = 564 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 113/318 (35%), Gaps = 43/318 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP++ + VGQPQV ++ +KA ++ L G G GKTT A I+ Sbjct: 5 YQVLYRKWRPQVFSDVVGQPQVTVTLQNELKAGRI----AHAYLFTGSRGTGKTTCAKIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + P E + + N DV+ ID + + + EE + PA Sbjct: 61 AKAVNCLSLKEGDPCGEC--ESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPA 118 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I ATT L + + R Sbjct: 119 AAKYRVYIIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFD-F 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + A + + AL +AR A G R A LL + + Sbjct: 178 HRIDPEVIADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSS-----E 232 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF--FGGPVGLDNLAAAIGEERETI-- 297 I+ ++ ++ + R L ++ D G L+ + ++ + Sbjct: 233 ITLEVVSETAGLAG----------RDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRL 282 Query: 298 -EDVLEPYLIQQGFLQRT 314 E++ + + L +T Sbjct: 283 CEELAGHF--RNLMLLKT 298 >UniRef50_Q2RZH6 DNA polymerase III, subunits gamma and tau, putative n=2 Tax=Rhodothermaceae RepID=Q2RZH6_SALRD Length = 728 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 119/356 (33%), Gaps = 48/356 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP L E V Q V ++ I+ +L L GP G+GKTT A I+ Sbjct: 6 YLVTARKYRPSLFTEVVAQEHVTETLKNAIRMERL----AHAYLFSGPRGVGKTTAARIL 61 Query: 76 ANEMGVNLRTT-----SGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEV 125 A + + P E D +V +D + + + E+V Sbjct: 62 AKAINCETPREEREDGAEPCCEC--DSCESFEAGRSLNVFEMDAASNNKVDDIRELREKV 119 Query: 126 LYPAMEDYQ-------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 P D + + ++ + A ++ PP I ATT + + R Sbjct: 120 RIPPQGDQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQ 179 Query: 177 IVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 VP++ + G+E ++ + +AR+ G R A + Sbjct: 180 RFD-FRRIPVPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGA 238 Query: 237 KHD-GTISAD--IAAQAL------DMLNVDAEGFDYMDRKLLLA---VIDKFFGGPVGLD 284 + G ++ + Q L + D G + R ++ + + + G L Sbjct: 239 TLEYGELTQALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLR 298 Query: 285 NLAAAIGEERETIEDVLEPYLIQQGFLQRTPRG------RMATTRA--WNHFGITP 332 NL A E +E+V E + + R R+ T A + +P Sbjct: 299 NLLVAHSLGGEALEEVAES--TRTRYADEAERFDEADLLRLLTMAADTEDDIKQSP 352 >UniRef50_A5FRM9 DNA polymerase III, subunits gamma and tau n=5 Tax=Dehalococcoides RepID=A5FRM9_DEHSB Length = 570 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 40/320 (12%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 + V R RP+ L + VGQ V ++ + + ++ L GP G GKT+ Sbjct: 2 ADMTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRI----AQAYLFCGPRGTGKTST 57 Query: 72 ANIVANEMGVNLRTT-SGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV 125 I+A + P + +T D++ ID + + + E+V Sbjct: 58 GRILAKAVNCTTNQGKGEPCNTCP--MCLSITEGSSMDIIEIDAASNTGVDDIRELKEKV 115 Query: 126 LY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFG 176 Y P++ +Y++ I + A ++ PP I ATT + + R Sbjct: 116 QYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQ 175 Query: 177 IVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV 236 + D+ + + + G+ + + +AR A G+ R LL+++ Sbjct: 176 RFD-FHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIA----T 230 Query: 237 KHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPV--GLDNLAAAI--GE 292 + IS AL + + + A+ + + GL L A + G Sbjct: 231 TYGAEISLSQVQAALGISGD----------ERIKALAENILKKDIKNGLKTLNAVLADGL 280 Query: 293 ERETIEDVLEPYLIQQGFLQ 312 + + L YL Q + Sbjct: 281 DLKQFRRELLDYLRQIMLVN 300 >UniRef50_A3ZPF5 DNA polymerase III gamma and tau subunits n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPF5_9PLAN Length = 618 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 25/265 (9%) Query: 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64 + + + V R RP+ EE VGQ QV ++ I+ ++ L G Sbjct: 7 EHVEPSHANDQYVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVG----HAYLFTGAR 62 Query: 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLS 119 G+GKT+ A I+A + ++ P E D+ +T E DVL ID I + Sbjct: 63 GVGKTSSARILAKALNCQRGPSATPCNEC--DICRSVTVGEDVDVLEIDGASNRGIEEIR 120 Query: 120 PVVEEV-LYPAMEDYQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSP 170 + V + P+ +++ I+ E A ++ PP I TT + Sbjct: 121 QLRSNVNIRPSRARFKIYIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPIT 180 Query: 171 LRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRV 230 + R ++ ++ ++ G+ + +AR+A G+ R + LL ++ Sbjct: 181 VLSRCQRFD-FGGIRMDEIVTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQL 239 Query: 231 RDFAEVKHDGTISADIAAQALDMLN 255 F I+ Q L Sbjct: 240 LAF----GGREITVADVNQMLGAAG 260 >UniRef50_A6CH16 DNA polymerase III gamma and tau subunits (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CH16_9PLAN Length = 484 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 119/313 (38%), Gaps = 35/313 (11%) Query: 10 AGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKT 69 + ++ V R RP+ E VGQ V ++ I+ ++ L G G+GKT Sbjct: 2 SSKSMQYTVLARRFRPQNFSEVVGQGMVAQALQNAIRGDRV----AHAYLFTGARGVGKT 57 Query: 70 TLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEE 124 ++A I+A + P E ++ + DVL ID I + + Sbjct: 58 SMARILAKALNCPHTQDGIPCGEC--EVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRAN 115 Query: 125 VLYPAM-EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRF 175 V +M Y++ I + E A ++ PP I TT L + R Sbjct: 116 VNVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRC 175 Query: 176 GIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAE 235 + + + + + A + ++DD VARRA G+ R + + ++ F E Sbjct: 176 QRFD-FGYIEENSICDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGE 234 Query: 236 VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE 295 ++A+ + L + D +L+ A+I++ V L + AA+ + Sbjct: 235 SH----LTAESVHRILGTAS------DERLIELIDALIEQKR--DVALTHFDAALNAGVQ 282 Query: 296 TIE--DVLEPYLI 306 E D L YL Sbjct: 283 LNEFVDQLLNYLR 295 >UniRef50_Q5X1E1 DNA polymerase III, gamma and tau subunits n=6 Tax=Legionella RepID=Q5X1E1_LEGPA Length = 556 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 25/259 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + VGQ + + + +L L G G+GKT++A Sbjct: 1 MSYLALARKWRPRTFSQLVGQEHINKALINALNQQRLH----HAYLFTGTRGVGKTSVAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + TS P L D + D++ ID + +++ + Y Sbjct: 57 ILAKALNCEKGITSEPCLHC--DTCVAIEQGRYIDLIEIDGASKTRVEDTRDLLDNIQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ A ++ PP I ATT L + R Sbjct: 115 PTNGRFKIYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + L+ +A+ ARG+ R A LL + E K Sbjct: 175 -LKHLPAELINQQLQLILQEERLDFEIQALDILAQAARGSMRDALSLLDQAITSCETK-- 231 Query: 240 GTISADIAAQALDMLNVDA 258 + A L D Sbjct: 232 --LLASDVKILLGHTQQDY 248 >UniRef50_A9D7T4 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=A9D7T4_9GAMM Length = 882 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 110/328 (33%), Gaps = 41/328 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQ V + + +L L G G+GKT+LA Sbjct: 1 MSYQVLARKWRPATFEQMVGQSHVLLALTNALTQQRLH----HAYLFSGTRGVGKTSLAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 + A + T+ P + + + D++ +D + +++ V Y Sbjct: 57 LFAKGLNCEQGITASPCGQCSS--CVEIAEGRFVDLIEVDAASRTKVDDTRELLDNVQYR 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ +++ ++ A ++ PP + ATT L + R Sbjct: 115 PSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ ++ +S L +A+ A G+ R A L + F Sbjct: 175 -LKSLTQDEISAQLSYVLTQEQLTFDHAALTLLAKAANGSMRDALSLTDQAIAF----GA 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-----LDNLAAAIGEER 294 GT+ L + D K +L++ + G + + + + + Sbjct: 230 GTVQLTQVQTMLGSI----------DEKHVLSLFNALVQGDIENLMRMIGQILSFGADPE 279 Query: 295 ETIEDVLEPYLIQQGFLQRTPRGRMATT 322 E + +LE L Q Q P + Sbjct: 280 EVLRSLLE-LLHQITLSQFAPAAAQLSI 306 >UniRef50_Q1QAW7 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QAW7_PSYCK Length = 685 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 30/297 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RPK E +GQ V + I +L L G G+GKTT+A I+ Sbjct: 5 YQVLARKYRPKNFHELIGQTHVSQALINAIDYNRLH----HAYLFTGTRGVGKTTIARIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PA 129 + + + TS P D + D++ ID + +++ V Y P+ Sbjct: 61 SKCLNCDTGITSTPCGVC--DNCVAIDQGRFIDLIEIDAASRTKVEDTRELLDNVPYAPS 118 Query: 130 MEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ ++ A ++ PP + ATT L + R L Sbjct: 119 QGRYKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRCLQFV-L 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 L ++ + + ++A A+G+ R A L + F G Sbjct: 178 RPLSQSLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAF----GQGA 233 Query: 242 ISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 + L +++ D+ + A I++ V ++ + E Sbjct: 234 LDDVTVNSMLGLIDAADLVSLITDIYNHDKPAVAAHIEQMRAQMVDASSMFDGLAEL 290 >UniRef50_B2J7Q6 DNA polymerase III, subunits gamma and tau n=4 Tax=Nostocaceae RepID=B2J7Q6_NOSP7 Length = 707 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 114/315 (36%), Gaps = 40/315 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + + RPK E VGQ + + + I +K+ L GP G GKT+ A Sbjct: 1 MSYEPLHHKYRPKSFAELVGQEAIATTLTNAIGTSKI----APAYLFTGPRGTGKTSSAR 56 Query: 74 IVANEMGVNLR--TTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 I+A + T+ P D+ +T DV+ ID + + ++E+ Sbjct: 57 ILAKSLNCLKSDRPTAEPCGVC--DVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQ 114 Query: 127 Y-PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 + P Y++ ++ + A ++ PP + ATT + + R Sbjct: 115 FAPVQCRYKVYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQR 174 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEV- 236 Q+ + +S A + +S + VA+ ++G R A LL ++ A V Sbjct: 175 FD-FRRIQLEAMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLAGVV 233 Query: 237 ------KHDGTISADIAAQALDMLNVDA--EGFDYMDRKLLLAVIDKFFGGPVGLDNLAA 288 GT+S L+ + D D + ++D+ L NLAA Sbjct: 234 TPDRVWDLVGTVSEQDLLGLLNAIAQDKPEAVLDSTHK-----ILDRGREPLTFLQNLAA 288 Query: 289 AIGEERETIEDVLEP 303 R+ + P Sbjct: 289 FY---RDLLIAKTAP 300 >UniRef50_C7PSN6 DNA polymerase III, subunits gamma and tau n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PSN6_CHIPD Length = 634 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 24/255 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP+ VGQ + + ++ I+ ++L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPQNFSTVVGQSHITTTLKNAIRNSQL----AHAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAME 131 + G + ++ +D + + +VE+V + P Sbjct: 62 TINCENLQPDGEACNQCH-SCTSFNEGSSFNIHELDAASNNSVDDIRTLVEQVRFAPQAG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I + Sbjct: 121 KYKIYIIDEVHMLSSSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD-FKR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 + D + ++ D VA++ G R + L ++ F G ++ Sbjct: 180 ITIQDTVDHLQEICSKEHIQAETDALHLVAQKTDGCMRDSLSTLDKIVSFT----GGHLT 235 Query: 244 ADIAAQALDMLNVDA 258 + L++L+ D Sbjct: 236 YQNTLEHLNILDYDY 250 >UniRef50_C5PXF7 DNA polymerase III, tau and gamma subunits n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PXF7_9SPHI Length = 596 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 113/322 (35%), Gaps = 29/322 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + ++ I +L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPVTFDSVVGQQHITGTLKNAIHNNQL----AQAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAM-E 131 + TS D N + +D + + ++++V P Sbjct: 62 TINCEH-ITSEVEACGVCDSCKSFQNGNSFSIHELDAASNNSVDDIRNLIDQVRIPPQSG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + + A ++ PP I ATT + + R I Sbjct: 121 KYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 +V D+ ++ A + DG +A++A G R A + ++ F+ + IS Sbjct: 180 IRVEDMARHLAGIAEKEVVTYDLDGLHIIAQKADGGLRDALSMFDQIVSFS----NKQIS 235 Query: 244 ADIAAQALDMLNVD---AEGFDYMDRKLLLAVI--DKFFGGPVGLDNLAAAIGEERETIE 298 L++L+ D + + +++ D+ ++ + + Sbjct: 236 YQSVIDNLNILDYDYYFKLTDAILQEEAAESLLIFDQVLNRGFDGNHFIGGLSSHLRNLL 295 Query: 299 DVLEPYLIQQGFLQRTPRGRMA 320 EP ++ + + R Sbjct: 296 VTKEPATLKLLDVSDNIKKRYL 317 >UniRef50_C0QV83 DNA polymerase III, gamma and tau subunits n=2 Tax=Brachyspira RepID=C0QV83_BRAHW Length = 527 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 117/324 (36%), Gaps = 33/324 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ EE +GQ + + I K+ L G G+GKT+LA I+ Sbjct: 5 YKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKI----AHAYLFSGAHGVGKTSLARII 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + T P + N P DV+ ID I + ++E V P Sbjct: 61 AKALNCVNGPTDKPCGVCPS--CTQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPV 118 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + E A ++ PP I ATT A + +R R Sbjct: 119 AGKYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQY-TF 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + DL+ I+ ++ ++ +A++ARG+ R + +L ++ + K Sbjct: 178 KSLGIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKK--Y 235 Query: 242 ISADIAAQALDMLNV-----DAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERE- 295 I++ + N + D++ + K F V +I E Sbjct: 236 ITSADVNAVVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRV 295 Query: 296 --TIEDVLEPYLIQQGFLQRTPRG 317 I+ ++ I+ + R Sbjct: 296 VLMIKSGIDD--IKLLEITENERD 317 >UniRef50_C4L8U6 DNA polymerase III, subunits gamma and tau n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8U6_TOLAT Length = 760 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 57/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E +GQ V + + +L L G G+GKTT+A Sbjct: 1 MAYQVLARKWRPRNFHEVMGQQHVLQALSNALDQGRLH----HAYLFSGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + TS P + + + D+L ID + +++ V Y Sbjct: 57 ILAKCLNCETGITSRPCGQCSA--CREIDQGNFVDLLEIDAASRTKVEDTRDLLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA +++ ++ A ++ PP + ATT L + R Sbjct: 115 PARGRFKIYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + R + L +A+ A+G+ R A L + + + Sbjct: 174 HLKALTREQIVEQLQRVLQAEQLTYEPAALSLLAKAAQGSMRDALSLSDQAIAY----GN 229 Query: 240 GTISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNL 286 G + A+ Q L L+ D L+ I D L Sbjct: 230 GLLQAETVQQMLGTLDHRQLYQILSLLAARDGAALMQQIGSLAELAPDYDQL 281 >UniRef50_Q117S8 DNA polymerase III, subunits gamma and tau n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q117S8_TRIEI Length = 695 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 108/314 (34%), Gaps = 39/314 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + + RP+ + VGQ + + I ++ L GP G GKT+ A Sbjct: 1 MAYEPLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRI----APAYLFTGPRGTGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + P ++ +T DV+ ID + + ++E + Sbjct: 57 VLAKSLNCLSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFA 116 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP I ATT + + + R Sbjct: 117 PVQCRYKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFD 176 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + + A ++++ + +A+ A+G R A LL ++ A Sbjct: 177 -FRRIPLEAMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLA----- 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G I+ + + + + L+ +++ DN + R+ ++ Sbjct: 231 GEITVERVWDLVGAVP----------ERDLMVLVEAIAA-----DNSIKVLKCTRQIMDR 275 Query: 300 VLEPYLIQQGFLQR 313 EP ++ Q Sbjct: 276 GKEPIIVLQNLAGF 289 >UniRef50_C7Q5N1 DNA polymerase III, subunits gamma and tau n=2 Tax=Actinomycetales RepID=C7Q5N1_CATAD Length = 863 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 37/309 (11%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP+ EE VGQ V ++ ++ ++ L GP G GKTT A I+A Sbjct: 22 LYRRYRPETFEEVVGQEHVTLPLQQALRNGRVN----HAYLFSGPRGCGKTTSARILARC 77 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + T P + DV+ ID + + E + PA Sbjct: 78 LNCEQGPTPTPCGTCRSCVELANGGSGSIDVIEIDAASHGGVDDARDLRERAFFAPAASR 137 Query: 133 YQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 +++ I+ G A ++ PP I ATT + +R R Sbjct: 138 FKIYIIDEAHMVTSAGFNALLKVVEEPPPHLKFIFATTEPEKVIGTIRSRTHHY-PFRLI 196 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 L+ ++ G+++ + V R G+ R A +L ++ A+ ++ Sbjct: 197 PPGVLREHLNDITAREGIKVEPEVLPLVVRAGAGSARDAMSVLDQLLAGADENG---VTY 253 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304 +A L Y D LL +++ F G AA G + +E +P Sbjct: 254 AMATGLLG----------YTDAALLDRLVEAFAGNDG-----AAVFGLVDQVVESGHDPR 298 Query: 305 LIQQGFLQR 313 L+R Sbjct: 299 RFLTDLLER 307 >UniRef50_Q7NAN3 RuvB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAN3_MYCGA Length = 306 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 184/309 (59%), Gaps = 12/309 (3%) Query: 24 RPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNL 83 RP +E++G+ +++ ++ FI A+ + ALDH+L +GPPG+GKT+LA I+ANE+ + Sbjct: 5 RPNNFDEFIGKNELKQKLLTFINASISQNKALDHVLFYGPPGVGKTSLAQIIANELKSKI 64 Query: 84 RTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGP 143 + ++K DL + L +DVLFIDEIH LSP + E+L+P MEDY +DI+IG+ Sbjct: 65 KILQASQIQKPADLLNAFSLLSKNDVLFIDEIHSLSPTIMELLFPIMEDYVVDILIGKEF 124 Query: 144 AARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLE 203 ++ ++ LPPFTLIGATT G + PL +RFGI+ +L++YQ ++ I+ ++ Sbjct: 125 NSKFTRMKLPPFTLIGATTMYGRIIDPLEERFGILLQLDYYQDDEIFEIIRSINAKEKIK 184 Query: 204 MSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDY 263 ++ D +++A ++GTPR A R+ +RV DF + TI L+ LN+ G Sbjct: 185 LTKDEMVQIAEHSKGTPRNALRIYKRVMDFKLFDQEITI-----KSILEKLNIYQYGLSN 239 Query: 264 MDRKLLLAVIDKFFGGP---VGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA 320 +D + L F P +GL +L+ G + TIE +EPYL++ +++T +GR Sbjct: 240 LDLEYL----KSFDDNPKLYLGLKSLSLISGIDCFTIESKIEPYLLKMNLIKKTSKGRQI 295 Query: 321 TTRAWNHFG 329 T +A +F Sbjct: 296 TQKAIQYFK 304 >UniRef50_B2KES0 DNA polymerase III, subunits gamma and tau n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES0_ELUMP Length = 627 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 115/331 (34%), Gaps = 45/331 (13%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 RP+ E+ VGQ + + IK ++ L +GP G GKTT A I Sbjct: 11 YISLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVG----HAYLFYGPRGCGKTTSARIF 66 Query: 76 ANEMGVN---LRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEE--V 125 A + + + P + + + N DVL +D + ++ + + Sbjct: 67 AKALNCTGNGNKPAASPCGKCPQCIE--IANGSDMDVLELDAASNTQVDKIREAIIDTVA 124 Query: 126 LYPAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 L + ++ + ++ A I+ PP I ATT + + + R Sbjct: 125 LAATRDRFKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQT 184 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 R D+ ++ A+ + + +A +A G R A +L R ++ Sbjct: 185 F-RFRPITQEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYS--- 240 Query: 238 HDGTISADIAAQALDMLNVDAEGFD-----YMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 DG+I+ ++ L ++ D + + V + G D L+ + + Sbjct: 241 -DGSITEELVIDMLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQ--MEGFDPLS-FLRD 296 Query: 293 ERETIED--------VLEPYLIQQGFLQRTP 315 + + D EP+ ++T Sbjct: 297 LKNALGDLFYLSIGHGHEPFSGAAELAKKTS 327 >UniRef50_Q0B0W5 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0W5_SYNWW Length = 499 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 124/327 (37%), Gaps = 30/327 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + RA RP+ E VGQ + + + ++ KL L GP G GKT++A Sbjct: 1 MAYLALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLS----HAYLFSGPRGTGKTSIAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL-Y 127 I+A + + P + + + N DV+ ID I + + E+V Sbjct: 57 IIAKAVNCENLSEGEPCNQCSS--CQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVL 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA ++ I + E A I+ PP I ATT + + + +R R + Sbjct: 115 PAQGKNKVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 ++ +S A G+ + + L +ARRA G R A +L ++ + K + Sbjct: 175 -FRRLTTAEITERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSY---KGN 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 +IS + + ++ D +L+ AV+ + +G+ A + G+E + + Sbjct: 231 NSISKQDVLEVMGLV------DDAFMAQLIAAVLSQDTPSIIGILGTAFSQGKEAQQLAR 284 Query: 300 VLEPYLIQQGFLQRTPRGRMATTRAWN 326 +L + Sbjct: 285 EASMFLRDFLLYLVAGKEADLVVAGEE 311 >UniRef50_D0WGG2 DNA polymerase III, subunit gamma and tau n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGG2_9ACTN Length = 862 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 93/254 (36%), Gaps = 26/254 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + R RP+ ++ VGQ + ++ +++ ++ L GP G GKTT+A ++A Sbjct: 3 EALYRKYRPQTFDDVVGQIHIERTIKNALESDRVS----HAYLFCGPRGTGKTTMARLLA 58 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHR--LSPVVEEV-----LYPA 129 + T P E + + DV +D R + V EE+ P Sbjct: 59 KALLCEKGPTPAPDGEC--EQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPV 116 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I TT + + + R Sbjct: 117 RGRYKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFD-F 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 ++ + G+E + A+RA+G R A L ++ F +G Sbjct: 176 HRLANEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAF----GEGR 231 Query: 242 ISADIAAQALDMLN 255 ++ +A L L+ Sbjct: 232 VTMQVALDVLGALD 245 >UniRef50_A5EY35 DNA polymerase III, subunits gamma and tau n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY35_DICNV Length = 665 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 31/278 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RPK E VGQ + + + +L L G G+GKT+LA I Sbjct: 2 YQVLARKWRPKTFRELVGQQHITQALSYALDHDRLH----HAYLFTGTRGVGKTSLARIY 57 Query: 76 ANEMGVNLRTTSG-PVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-P 128 A + + TS P + + + D++ +D I +++ + Y P Sbjct: 58 AKSLNCLINGTSAQPCGQC--EHCLEIDQGRFPDLIEVDAASRRGIDETKELLDNLPYAP 115 Query: 129 AMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ + E A ++ PP I ATT + + + R Sbjct: 116 VKGRYKVYLIDEVHMFTRESFNALLKTLEEPPPHVKFILATTDIQKVPTTVLSRCLQF-H 174 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 L+ L+ ++ + ++ + + +A+ ARG+ R L + + G Sbjct: 175 LKNINPEQLRQHLAHILQVERIDYEAEALVLLAQAARGSMRDGLSFLDQAIAY----GQG 230 Query: 241 TISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVI 273 + D A L + D + + A++ Sbjct: 231 VVKTDDVAYLLGAVPTAQIYRLLTKIAESDARAVRAIL 268 >UniRef50_UPI0001977980 DNA polymerase III subunits gamma and tau n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001977980 Length = 562 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 110/317 (34%), Gaps = 36/317 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + RP + VGQ + + + + + + L G G GKT+ A Sbjct: 1 MSSIALALKYRPASFSDLVGQNAISQTLSLALDSKHIS----HAYLFSGLRGSGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I A + S P A +AA+ D++ +D I + ++E+ Y Sbjct: 57 IFARALECESGPISTPCGSCASCVAAL--ENRHIDIIEMDAASSRGIDDIKKLIEQTKYR 114 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y+ + ++ E A ++ PP I ATT L + + R Sbjct: 115 PSFGRYKIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 R + + ++ G+ + +AR G+ R LL + F + Sbjct: 174 RFKQIPHRLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCK---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE-ERETIE 298 I + L + VD + + +L DK G + + E E E I Sbjct: 230 NHIEVASVSDMLGI--VDPQVLKEYFQGILHHQHDKVSG-------ILQVLYEYECEMIL 280 Query: 299 DVLEPYLIQQGFLQRTP 315 D + +++ LQR Sbjct: 281 DEMM-LFLKEKLLQRDS 296 >UniRef50_C5CHM0 DNA polymerase III, subunits gamma and tau n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHM0_KOSOT Length = 503 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 118/328 (35%), Gaps = 37/328 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 +V R RPK EE VGQ QV+ ++ I+ + + FGP G GKTT A I+ Sbjct: 5 AEVLYRKYRPKKFEEIVGQDQVKIVLKKAIENQSI----AHAYIFFGPRGTGKTTTARIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + L P + + + N DV+ ID I + + + Y P Sbjct: 61 AKALNC-LSHDDKPCGKC--ESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPT 117 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 M Y++ I + E A ++ PP I ATT + + R + Sbjct: 118 MGHYKVYIVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVF-TF 176 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + R + + + +A+ A+G R A LL R F Sbjct: 177 KPLSEGQIVEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVF-----GEK 231 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVL 301 I D L +L + + L+A+++ + L +G +++ Sbjct: 232 IEEDNVKNILGILP------EEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQS 285 Query: 302 EPY---LIQQGFLQRTPRGRMATTRAWN 326 +I + L+ RG + W Sbjct: 286 IELTKDMISRRELEFE-RGVKLIEKLWE 312 >UniRef50_UPI0001C334AE DNA polymerase III, subunit gamma/tau n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C334AE Length = 726 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 110/315 (34%), Gaps = 43/315 (13%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 + + RP+ + VGQ + + I++ ++ L GP G GKT+ A I Sbjct: 3 FYEPLYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRIS----HAYLFTGPRGTGKTSTARI 58 Query: 75 VANEMGVNLRTTSGPVLEKAGDL--AAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY 127 A + + P + G+ + DV+ ID + + ++E+ + Sbjct: 59 FAKSINC--LASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKF 116 Query: 128 PAME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIV 178 M+ Y++ I + A ++ PP I ATT + + R Sbjct: 117 APMQLRYKIYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRF 176 Query: 179 QRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKH 238 + ++ + + A+ + + D VA+ + G R A LL ++ F Sbjct: 177 D-YRRIAIEEIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFT---- 231 Query: 239 DGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIE 298 G I+++ + +++ + LL+++ L I + I Sbjct: 232 -GKINSEKVNDLVGLIS----------ERDLLSLLQAIRSNNSKL-----IIEFCGQLIN 275 Query: 299 DVLEPYLIQQGFLQR 313 EP I Q Sbjct: 276 KGKEPLTILQNIANF 290 >UniRef50_B8DQU3 DNA polymerase III, subunits gamma and tau n=2 Tax=Desulfovibrio RepID=B8DQU3_DESVM Length = 688 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 31/301 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 + R RP+ E GQ V++ + ++ L G G+GKTT+A I+ Sbjct: 4 APLTAR-YRPQTFAEVAGQETVKAILSRAAAEDRV----APAYLFSGTRGVGKTTIARIL 58 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYPAM 130 A + T P + + DV+ ID I + E + Y M Sbjct: 59 AKALNCEKAPTGEPCNTC--EQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAIGYAPM 116 Query: 131 E-DYQL------DIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 E Y++ ++ E A ++ PP T + ATT + R Sbjct: 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHF-TF 175 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + +L+ ++ G + +ARRA G+ R + LL +V Sbjct: 176 KRLPENELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLAL----GGDR 231 Query: 242 ISADIAAQALDMLNVD-----AEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 ++ + A L + + + D + AV+ V + + Sbjct: 232 LTVEGARGVLGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRN 291 Query: 297 I 297 + Sbjct: 292 L 292 >UniRef50_C1SKL9 DNA polymerase III, subunit gamma/tau n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKL9_9BACT Length = 534 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 21/244 (8%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R +RP+ +E GQ V + ++ I+ ++ L GP G+GKT+ A Sbjct: 1 MSYIALARKLRPQNFDELSGQEFVVTTLKNSIEMGRV----AHAYLFTGPRGVGKTSAAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LY 127 I+A + S P + + +T+ DV+ ID I + + E V Sbjct: 57 ILAKAVNCLEPVGSNPCNKC--ENCTEITSGTSMDVVEIDGASNRGIDEIRELREAVRFL 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ I + A ++ PP I ATT L + + R Sbjct: 115 PVKCKFKVYIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRCQKYD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ + G+E D V R + G R + LL ++ F K D Sbjct: 175 -FNKIPFEIMYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLLDQIIAFTGGKLD 233 Query: 240 GTIS 243 + Sbjct: 234 EQST 237 >UniRef50_C6XQ39 DNA polymerase III, subunits gamma and tau n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQ39_HIRBI Length = 619 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 115/324 (35%), Gaps = 37/324 (11%) Query: 9 SAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGK 68 ++G V R RP ++ VGQ + + K ++ ++ G G+GK Sbjct: 30 NSGGEGAYQVLARKYRPTTFDDMVGQEAMVRTLTNAFKTGRI----AHAFMLTGVRGVGK 85 Query: 69 TTLANIVANEMGVNLRTTSGPVLE--KAGDLAAMLTNLEPHDVLFID-----EIHRLSPV 121 TT A ++A + + P ++ G + DVL +D + + + Sbjct: 86 TTTARLLARALNYSRDGVEEPSVQLSPVGRHCQAIMESRHPDVLELDAASRTGVADMREL 145 Query: 122 VEEVLYPAM-EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLR 172 ++ V Y + Y++ I + A ++ PP I ATT + + Sbjct: 146 LDGVRYSPVNARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 205 Query: 173 DRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRD 232 R L L + R G ++S++G ++R A G+ R A +L + Sbjct: 206 SRCQRFN-LARLTTDALAAHLGRICEKEGAKVSEEGLALISRAAEGSARDALSVLDQAIV 264 Query: 233 FAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG--PVGLDNLAAAI 290 + +S D L + DR + ++D G V L+ A + Sbjct: 265 QST---GDEVSVDAVRDMLGLA----------DRARVFDLLDAAIAGEHKVALEETNAQL 311 Query: 291 GEERETIEDVLEPYLIQQGFLQRT 314 E E +++ L + R Sbjct: 312 QEGAEAQI-LMKDLLDAMAEIARA 334 >UniRef50_A7HGU5 DNA polymerase III, subunits gamma and tau n=5 Tax=Cystobacterineae RepID=A7HGU5_ANADF Length = 606 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 109/296 (36%), Gaps = 30/296 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ E GQ V + +K +L L GP G+GKTT A Sbjct: 1 MNYLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQL----AHAFLFTGPRGVGKTTTAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 +VA + T+ P + DV+ ID + + +VE V Y Sbjct: 57 LVAKALNCEKGPTAEPCGACTP--CVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVKYR 114 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 PA + Y+ + ++ A ++ PP + ATT + + R Sbjct: 115 PARDRYKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + + +++ A G+ ++ VAR+A G R A LL +VR A D Sbjct: 175 -FRRLTLQQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPD 233 Query: 240 GTISADIAAQALDMLNVDAE-----GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAI 290 A+AL ++ A + + LLA ++ + + +A I Sbjct: 234 E----AAVAEALGAVDAAAISRICGALVHREGGALLAELEALHARGLEMKRVAEEI 285 >UniRef50_UPI00016C46EC DNA polymerase III gamma and tau subunits n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C46EC Length = 614 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 106/314 (33%), Gaps = 37/314 (11%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP+ E +GQ V + +K+ ++ L G G+GKT+ A I+ Sbjct: 17 YTVVARRYRPQQFSELIGQEHVAGALVNALKSGRV----AHAYLFTGARGVGKTSAARIL 72 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEV-LYPA 129 A + + P D + + DVL ID + + + + V PA Sbjct: 73 AKALNCLKTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPA 132 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ I + A ++ PP I ATT + + R Sbjct: 133 RGRYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFD-F 191 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + R G + DD VARRA G+ R + LL ++ + GT Sbjct: 192 AHVGPGKIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSS----GT 247 Query: 242 ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGP--VGLDNLAAAI--GEERETI 297 ++A L D ++ + LD +A + G + + Sbjct: 248 LTAGQVTAVLGTAGDDR----------VIELAKAILANDPKTALDRIAEWVERGLQIGEL 297 Query: 298 EDVLEPYLIQQGFL 311 D + Y + Sbjct: 298 IDQVVEYWRALMLV 311 >UniRef50_B0TVX0 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=B0TVX0_FRAP2 Length = 551 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 31/275 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ E GQ + + ++ K+ L G G+GKTTL Sbjct: 1 MSYQALARKYRPQSFSEVAGQQHALNSLVHALETQKVH----HAYLFTGTRGVGKTTLGR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 ++A + T+ P + + + N D++ ID + +++ + Y Sbjct: 57 LLAKCLNCKTGVTAEPCNKC--ENCLAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P+ Y++ ++ + A ++ PP I ATT + + R I Sbjct: 115 PSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC-IQL 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ D++ + + + +A A+G+ R A LL + F Sbjct: 174 HLKHISQSDIKDQLKVVLNKENISSDEQSLDYIAYHAKGSLRDALSLLDQAISFCS---- 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVID 274 G + Q L ++ ++ A+I+ Sbjct: 230 GELKQAQIKQMLGII------DSEEVYNIIEAIIE 258 >UniRef50_D1CBX8 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBX8_THET1 Length = 550 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 111/310 (35%), Gaps = 32/310 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 R R + +E VGQ V+ + IK+ K+ L GP G GKT+ A ++A Sbjct: 3 QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKI----AHAYLFCGPRGTGKTSTARLLA 58 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAME 131 + T P + + D++ ID + ++ ++E V + E Sbjct: 59 KAVNCLSEGT-KPCNSCSA--CLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAE 115 Query: 132 -DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + A ++ PP + ATT + + R Sbjct: 116 LRYKVYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFD-FR 174 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ ++ A +++ D + +A+ + G+ R A +L ++ + D I Sbjct: 175 RITPREIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVY----GDEEI 230 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + + Q L ++ D + A+ID + L + G + L Sbjct: 231 TLEHVKQLLGIVGEDVVA------NFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELV 284 Query: 303 PYLIQQGFLQ 312 YL L+ Sbjct: 285 SYLRDLMLLK 294 >UniRef50_B3DWR2 DNA polymerase III, gamma/tau subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWR2_METI4 Length = 618 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 100/313 (31%), Gaps = 40/313 (12%) Query: 12 TTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTL 71 + V R RP++ E VGQ V ++ I+ ++ L GP G GKTTL Sbjct: 12 PSFMYQVFSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRV----AHAYLFSGPRGTGKTTL 67 Query: 72 ANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL 126 A I+A + + + + D + ID + ++ + E Sbjct: 68 ARILAKSLNCADGP--NADFDPDDPICLDIDAGRSLDCIEIDGASNNGVDQVRELREAAK 125 Query: 127 -YPAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGI 177 P Y++ I + A ++ PP I ATT + + R Sbjct: 126 SLPVQSRYKIYIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQR 185 Query: 178 VQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVK 237 + + + + ++ +A + G R A L ++ F Sbjct: 186 F-HFKRIPRRLIADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFY--- 241 Query: 238 HDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 I + ++ ++ L + D G G A+ E + + Sbjct: 242 -GEKIDQSSVQEMFGLVGIEP---------LCRLLTDLAQGDGRG------ALKEAHQLL 285 Query: 298 EDVLEPYLIQQGF 310 E +P + + F Sbjct: 286 ESGKDPLSLLRSF 298 >UniRef50_C9LR83 Putative DNA polymerase III, gamma/tau subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR83_9FIRM Length = 638 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 110/313 (35%), Gaps = 39/313 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP +E +GQ + + + +L L GP G GKT++A Sbjct: 1 MAYLSLYRKWRPSTFKEIIGQKHISIPILRAFEQNRL----AHAYLFSGPRGTGKTSMAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVL-Y 127 I+A + P E A + DV ID + + + E V Sbjct: 57 ILAKAVNCLDLKNGNPCNECAN--CKSINTGASMDVYEIDGASARGVDEIRVLRESVRTL 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + ++ I + E A ++ PP I ATT + + R + Sbjct: 115 PVAGNKKVYIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYE 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 V D++ + ++ L ++ + A +A RA G R A LL + + Sbjct: 175 -FHRISVNDIKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASA---G 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 +SA+I L + D++ ++ + G +A + + ++D Sbjct: 231 NELSAEIVYDLLGL----------TDKEQIIDLFHMIVCGKS-----SATLQLFYKILQD 275 Query: 300 VLEPYLIQQGFLQ 312 EP I L+ Sbjct: 276 GKEPSAILSDLLE 288 >UniRef50_A5V2B2 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V2B2_SPHWW Length = 582 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 41/320 (12%) Query: 10 AGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKT 69 + ++ P V R RP+ E +GQ + + + I+ +L L+ G G+GKT Sbjct: 2 SESSTPYRVLARKYRPQNFNELIGQDAMVTTLANAIRRGRL----AHAFLLTGVRGVGKT 57 Query: 70 TLANIVANEMGVNLRTT-SGPVLEKAGDL--AAMLTNLEPHDVLFIDE-----IHRLSPV 121 + A ++A + GP ++ G + DV+ +D I + + Sbjct: 58 STARLIAKALNCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREI 117 Query: 122 VEEVLYPAME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLR 172 +E V Y ++ Y++ I + ++ PP + ATT + + Sbjct: 118 IEAVRYASVSARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVL 177 Query: 173 DRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRD 232 R L L + G+E + +AR A G+ R +L + Sbjct: 178 SRCQRFD-LRRITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIA 236 Query: 233 FAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGE 292 G + A L + DR + + + G AA + Sbjct: 237 H----GSGRVEAQQVRDMLGLS----------DRGAVRRLFGEMLKGDA-----AAVLAS 277 Query: 293 ERETIEDVLEPYLIQQGFLQ 312 R + +EP + G L+ Sbjct: 278 IRGQYDLGVEPVAMLHGLLE 297 >UniRef50_A5N3V9 DnaX n=34 Tax=Clostridium RepID=A5N3V9_CLOK5 Length = 553 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 106/317 (33%), Gaps = 32/317 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RPK + VGQ + ++ I L L G G GKT++A Sbjct: 1 MSYTTLYREWRPKNFSDVVGQNHITVTLKNQI----LNNRVAHAYLFCGTRGTGKTSMAK 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 I+A + P E ++ + DV+ +D ++ + V+E V YP Sbjct: 57 ILAKAVNCLDIQQGEPCNEC--EMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYP 114 Query: 129 AME-DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 E Y++ I + E A ++ PP I ATT L + R Sbjct: 115 PQEGKYKVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ + G+ D ++R G R A +L + Sbjct: 175 -FRRIKSSEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISM----GS 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 G + + L + V E ++ ++ +D++ + + I++ Sbjct: 230 GKVEYNSIVDMLGL--VTNENLFHLTDSIIE---KNVELSMKVIDDIVLSGKDIYNFIKE 284 Query: 300 VLEPYLIQQGFLQRTPR 316 ++ + + + Sbjct: 285 MIVHL--RNLLMVKVSN 299 >UniRef50_A9BI02 DNA polymerase III, subunits gamma and tau n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI02_PETMO Length = 467 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 40/306 (13%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RPK +E +GQP V + + + + + GP G GKTT A I+A Sbjct: 5 LYRKYRPKDFDEILGQPHVVKYFKNALN----KQEVSHAYIFSGPRGTGKTTTARILAKV 60 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + P + + + N DV+ +D I + + + Y P Sbjct: 61 LNCKDPQGYNPCNKC--ENCVSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGK 118 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R I+ + Sbjct: 119 YKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIIN-FKNL 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ + A G+E D +A+RA+G R A +L +V F + I+ Sbjct: 178 GQNEIVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKF----GEKKITH 233 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG-----LDNLAAAIGEERETIED 299 L + D ++ I+ + + ++L + +E Sbjct: 234 QDTLDILGL----------FDENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQ 283 Query: 300 VLEPYL 305 +E Sbjct: 284 SIEYIF 289 >UniRef50_B5Y8Y6 Holliday junction DNA helicase RuvB n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y6_COPPD Length = 320 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 120/299 (40%), Positives = 175/299 (58%) Query: 28 LEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTS 87 L+E+VGQ S + ++AAK G DH+L FGPPGLGKTTLA +VA E+ N T+ Sbjct: 14 LKEFVGQTTAVSSVSFSVEAAKKLGKMPDHMLFFGPPGLGKTTLARLVAQEVAANFVETT 73 Query: 88 GPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARS 147 G L D+ +L + V FIDEIHR+ VEE+LY M++ + +M+G+ AR Sbjct: 74 GNSLTNVKDVLNILLSFSRPTVFFIDEIHRIPKSVEELLYAPMDEQVIRVMVGKNKTARI 133 Query: 148 IKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDD 207 IK DL PFTLIGATT+ L+ P RF I +Y ++ I+ GL++S + Sbjct: 134 IKFDLQPFTLIGATTKISFLSKPFLSRFSIKISFNYYGEEEIGKIIKEELAQQGLDISAE 193 Query: 208 GALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRK 267 E+A+R+RGTPR A ++ RRV ++A + H T+ ++LN+D G +D+ Sbjct: 194 ALREIAKRSRGTPREALQICRRVVEYAALNHLETLDVGAIIDLFNLLNIDEYGLSPLDKD 253 Query: 268 LLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWN 326 + + + F GGP G+ LA+A+G + ET+E V+EPYL+ GF+ T RGR T + W Sbjct: 254 YIRTLAETFKGGPSGIRVLASALGMDVETLEGVVEPYLMMLGFVTVTSRGRKLTDKGWK 312 >UniRef50_A1AWB5 DNA polymerase III, subunits gamma and tau n=3 Tax=Gammaproteobacteria RepID=A1AWB5_RUTMC Length = 529 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 27/294 (9%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 V R RP + VGQ + + + A L L G G+GKTT+A I+ Sbjct: 5 YQVLARKYRPHSFVKLVGQTHTKKTLINALDANNLH----HGFLFTGTRGVGKTTIARIL 60 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PA 129 A + +S P + A + + D++ +D + + ++E Y P+ Sbjct: 61 AKSINCEQGISSKPCDKCA--TCVEIDKGQSIDLIELDAASHTGVDNMRDILENAQYMPS 118 Query: 130 MEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 Y++ ++ A ++ PP + TT L + R L Sbjct: 119 KNRYKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQF-TL 177 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + ++ + L + ++A G+ R A LL + + GT Sbjct: 178 QQLTHDEILEQLKFIMNAEVLSYEESALGQIADFGNGSMRDALSLLDQSISY----GKGT 233 Query: 242 ISADIAAQALDMLNVDA--EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEE 293 ++ L +++ D + ++ + AVID +NL+ A+ + Sbjct: 234 VTNADIKAMLGLVHHDDIIKLTTHLFSQDAKAVIDFIKDLSRRGENLSNALKDL 287 >UniRef50_B0PF11 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PF11_9FIRM Length = 536 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 88/254 (34%), Gaps = 26/254 (10%) Query: 16 EDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIV 75 R RPK ++ VGQ + + ++ + A K L G G GKTT + IV Sbjct: 2 YQALYRKWRPKTFDDVVGQEHITATLKNEVAAGK----FSHAYLFTGSRGTGKTTCSKIV 57 Query: 76 ANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPA 129 A + P E A + + DV+ ID + + + EE P+ Sbjct: 58 AKAVNCERPVDGNPCNECAA--CRGIDDGSVLDVVEIDAASNNGVDNIRQLREEAYFLPS 115 Query: 130 MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRL 181 + Y++ I + A ++ PP I ATT + + R Sbjct: 116 VVKYRVYILDECHMLSQGAVNALLKILEEPPEHVVFILATTEIHKVLPTILSRCQRFD-F 174 Query: 182 EFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT 241 + + + A ++DD AL +AR + G R A LL F Sbjct: 175 HRIRSRVIADRLLYIAEQESFSLADDAALLIARLSDGGMRDALSLLDLCASF-----GTD 229 Query: 242 ISADIAAQALDMLN 255 I+ QA + Sbjct: 230 ITVQAVTQAAGLAG 243 >UniRef50_A6GJ36 DNA polymerase III, gamma and tau subunits n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJ36_9DELT Length = 747 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 29/303 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + R RP+ + +GQ V +E IK+ ++ L G GLGKTT A Sbjct: 1 MAYLALARKYRPQRFADMIGQEHVTRTLENAIKSDRVH----HAYLFCGVRGLGKTTAAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEV-LY 127 I+A + T P + + DV+ ID + + + ++V Sbjct: 57 ILAKCLVCEHGPTPEPCNQCV--HCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYL 114 Query: 128 PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + ++ I + A ++ PP T + ATT + + R + Sbjct: 115 PQIARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLD 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + L + G + +G +AR G+ R + LL +V FA Sbjct: 175 -YRRVRAATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFA--HDP 231 Query: 240 GTISADIAAQALDMLN---VDAEGFDYMDRKLLLAVI--DKFFGGPVGLDNLA-AAIGEE 293 I+ + L + V +DR + ++ L LA A + Sbjct: 232 KAITGEEVLTVLGQASRYAVAELVQAILDRDAASVLQRFEQITSSGSDLMQLAVAILQHL 291 Query: 294 RET 296 R+ Sbjct: 292 RDL 294 >UniRef50_Q0VNM5 DNA polymerase III, gamma and tau subunits n=2 Tax=Gammaproteobacteria RepID=Q0VNM5_ALCBS Length = 615 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 58/320 (18%), Positives = 106/320 (33%), Gaps = 39/320 (12%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ +E VGQ V + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I++ + ++ P +T+ D++ +D + +++ V Y Sbjct: 57 ILSRCLNCEQGVSARPCGVCP--TCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + + L + + A G+ R A L + F Sbjct: 174 SLKALPAEQIAGHLKTLLDKEMIRYDEPALLSLGKAAEGSMRDALSLTDQAIAF----GG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVG--LDNLAAAIGEERE-- 295 +S++ L + DR +L ++ G L LA+ Sbjct: 230 EQLSSEAVNAMLGTV----------DRNHVLTLLVALAEQEPGGVLQALASVSEHCPGEL 279 Query: 296 TIEDVLEPYLIQQGFLQRTP 315 + D L L Q Q P Sbjct: 280 ALLDELISQLHQLAVCQAVP 299 >UniRef50_Q98BM8 DNA polymerase III tau n=2 Tax=Mesorhizobium RepID=Q98BM8_RHILO Length = 604 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 112/319 (35%), Gaps = 40/319 (12%) Query: 11 GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTT 70 G V R RP E VGQ + + ++ ++ G G+GKTT Sbjct: 14 GKAAAYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRI----AQAWMLTGVRGVGKTT 69 Query: 71 LANIVANEMGVNLRTTSGPVLEKA--GDLAAMLTNLEPHDVLFID-----EIHRLSPVVE 123 A I+A + T P ++ A G+ + DV+ +D I + ++E Sbjct: 70 TARILARALNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIE 129 Query: 124 EVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDR 174 V Y P Y++ I + + ++ PP I ATT + + R Sbjct: 130 RVRYAPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 189 Query: 175 FGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA 234 L L +S A G+ + DD +AR A G+ R + +L + Sbjct: 190 CQRFD-LRRIDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAH- 247 Query: 235 EVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEER 294 G +SA+ L + DR ++ + + G V AAA+ E R Sbjct: 248 ---GAGAVSAEAVRAMLGLA----------DRARIVDLFEHVMKGDV-----AAALAEFR 289 Query: 295 ETIEDVLEPYLIQQGFLQR 313 + +P + + Sbjct: 290 TQYDTGADPAAVLTDLAEF 308 >UniRef50_Q8DJU0 DNA polymerase III gamma and tau subunits n=4 Tax=Cyanobacteria RepID=Q8DJU0_THEEB Length = 603 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 48/336 (14%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + + RP+ + VGQ + + + + L+ L GP G GKT+ A Sbjct: 1 MTYEPLHHKYRPQRFSDLVGQGAIATTLTQAL----LKERIAPAYLFCGPRGTGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY- 127 I+A + + P ++ + N DV+ ID + + ++E+ + Sbjct: 57 ILAKSLNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFA 116 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP I ATT + + R Sbjct: 117 PVQCRYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFD 176 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 + ++ + A +++ + VA+ ++G R A LL ++ + Sbjct: 177 -FRRIPLGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYP----- 230 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 I+ + Q + D + LL G + + + + R+ +E Sbjct: 231 ERITVEQVWQLTGAVP-------EQDLRQLL--------GAIARRDAVSVLEHTRQLLER 275 Query: 300 VLEPY--------LIQQGFLQRT-PRGRMATTRAWN 326 +P L + L +T P+ R Sbjct: 276 GRDPLTILQNLASLYRDLLLAKTVPQRRDLVALTAE 311 >UniRef50_D2QBB5 DNA polymerase III, subunits gamma and tau n=5 Tax=Bacteria RepID=D2QBB5_9SPHI Length = 664 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 103/301 (34%), Gaps = 29/301 (9%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + + ++ IK L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPATFDTVVGQEHITTTLKNAIKTNHL----ASAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAM-E 131 + T G + + ++ +D + + ++++V YP Sbjct: 62 TINCQNLTAEGEACDAC-ESCVSFNQNASFNIHELDAASNNSVEDIRNLIDQVRYPPQSG 120 Query: 132 DYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEF 183 Y++ I + A ++ PP I ATT + + R I Sbjct: 121 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPTYAIFILATTEKHKILPTILSRCQIFD-FNR 179 Query: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTIS 243 Q + ++ A+ G+ + +A++A G R A + FA D I Sbjct: 180 IQPQHIANHLAGIAQKEGITAETEALDLIAQKADGGLRDALSMFDLNVTFAA---DRIIR 236 Query: 244 ADIAAQALDMLNVDAE------GFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETI 297 L +L+ D + LL V + G G + R+ + Sbjct: 237 YKEVLDNLHILDYDYYFKLTDLLLAGKLPQSLLTVDEILRKGFDGHQFIVGLCRHFRDLL 296 Query: 298 E 298 Sbjct: 297 V 297 >UniRef50_B4X4U2 DNA polymerase III, subunits gamma and tau, putative n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4U2_9GAMM Length = 635 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 109/316 (34%), Gaps = 31/316 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP+ +E VGQ V + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKYRPRTFDELVGQEHVSRALMHALDQDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I++ + ++ P +T+ D++ +D + +++ V Y Sbjct: 57 ILSRCLNCEQGVSARPCGVCP--TCQEITDGRFVDLIEVDAASRTKVEDTRELLDNVQYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSAHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQF- 173 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + + + + L + + A+G+ R A L + F Sbjct: 174 SLKALPAEQIAGHLKTLLDKEMIRYEEPALLSLGKAAQGSMRDALSLTDQAIAF----GS 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 +S++ L ++ + LL+A+ ++ GG + + + D Sbjct: 230 EQLSSEAVNAMLGTVDRNHV------LTLLVALAEQEPGGVLQALATVSEHCPGELALLD 283 Query: 300 VLEPYLIQQGFLQRTP 315 L L Q Q P Sbjct: 284 ELISQLHQLAVCQAVP 299 >UniRef50_B8CZX2 DNA polymerase III, subunits gamma and tau n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZX2_HALOH Length = 588 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 98/275 (35%), Gaps = 35/275 (12%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP+ + VGQ V ++ +++ ++ L GP G GKT+ A + A Sbjct: 6 LYRKYRPQNFNDLVGQHHVVRTLKNALESGRI----AHAYLFAGPRGTGKTSTAKVFAMA 61 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYPAMED 132 + T+ P + + + + DV+ ID I + + E+V YP + Sbjct: 62 LNCIHGPTTEPCGQC--ENCRKIQKGQSIDVIEIDAASNRGIDEIRELREKVKFYPNEGE 119 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + A ++ PP I ATT + + + R Sbjct: 120 YKVYIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQRFD-FSLL 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V ++Q + +E ++ +AR A G R A LL + + ++ Sbjct: 179 PVREIQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISYT----GNNLNP 234 Query: 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGG 279 L ++ R++L I G Sbjct: 235 IDVQGMLGKVS----------REVLSQFIKYVLNG 259 >UniRef50_Q6ABA1 DNA polymerase III subunit gamma n=4 Tax=Propionibacterium acnes RepID=Q6ABA1_PROAC Length = 957 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 111/328 (33%), Gaps = 30/328 (9%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP+ +E +G+ V ++ I ++ L GP G GKTT A I+A Sbjct: 110 LYRRYRPETFDEVIGEDHVIEPLKRAILNNRVN----HAYLFSGPRGCGKTTTARILARA 165 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + T P DV+ ID + + E + P Sbjct: 166 LNCEQGPTPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVHSR 225 Query: 133 YQLDIM------IGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I+ +G A ++ PP I ATT + +R R Sbjct: 226 YKIYIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHY-PFRLV 284 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 L ++ G+++ V R G+ R + +L ++ A DG +S Sbjct: 285 PPKVLVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGGAA---DGHVSY 341 Query: 245 DIAAQALD-----MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLA-AAIGEERETIE 298 + AA L +L+ + F D + A IDK A + R+ + Sbjct: 342 EQAAALLGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLVI 401 Query: 299 DVLEPYLIQQGFLQRTPRGRMATTRAWN 326 P + G + +P AT A Sbjct: 402 VSAVPDACRSGLIDVSPE--QATRLAHQ 427 >UniRef50_Q6MDZ7 Probable DNA-directed DNA polymerase III subunits gamma/tau dnaX n=2 Tax=Parachlamydiaceae RepID=Q6MDZ7_PARUW Length = 522 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 112/316 (35%), Gaps = 38/316 (12%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 V R RP+ +E GQ V + ++ IK +L L G G GKTTLA I Sbjct: 3 EYQVIARKFRPQTFKEVFGQEAVVTTLKNAIKFKRL----AQAYLFCGSRGTGKTTLARI 58 Query: 75 VANEMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP 128 A + T P + +T+ DVL ID I + + E V Y Sbjct: 59 FAKAINCQNSTEDFEPCNQCTS--CREITSGSSLDVLEIDGASHRGIEDIRQINETVGYA 116 Query: 129 A-MEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 A Y++ I + E A ++ PP I ATT A + + R Sbjct: 117 ATSGQYKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFN 176 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L + + + A + +++ ++ +A +A G R A L ++ F+E Sbjct: 177 -LSRIPLSQIMIKLKLIADQLEIDVEEEALQLLAYKAEGGLRDAESLFDQIVAFSE---- 231 Query: 240 GTISADIAAQALDMLN---VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERET 296 G I+A L ++ + + A + + A + Sbjct: 232 GKINAATVQSILGLMPREAYFELDLAGKEGNFVKAFEIAYR--------IFAEGKDLNHF 283 Query: 297 IEDVLEPYLIQQGFLQ 312 IE +++ + +Q Sbjct: 284 IEGLIDHFRH-ILLIQ 298 >UniRef50_D1C546 DNA polymerase III, subunits gamma and tau n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C546_SPHTD Length = 589 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 112/321 (34%), Gaps = 31/321 (9%) Query: 10 AGTTLPEDVADRAIRPKLLE--EYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLG 67 A T R RP+ E+VGQ + + I ++ L GP G G Sbjct: 9 AETAAQSQSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRV----AHAYLFCGPRGTG 64 Query: 68 KTTLANIVANEMGVNLRTTSG-PVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPV 121 KT+ A ++A + P + + D++ ID + + + Sbjct: 65 KTSTARLLAKAVNCLAPDPEARPCNAC--EACEAINAGTAVDIIEIDAASNRGVDDIRDL 122 Query: 122 VEEVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLR 172 E+V Y P + I + + A ++ PP + ATT L + Sbjct: 123 REKVKYAPTQLRVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIA 182 Query: 173 DRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRD 232 R + + D+ + G+E D+ +AR+A G+ R A LL ++ Sbjct: 183 SRCQRFD-FRRFALSDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLAL 241 Query: 233 FAE-VKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIG 291 F E V I+AD + M D L+ A+ K G + + A G Sbjct: 242 FGETVDGKLVITADAVRRVTGMSRSDRL------VALVDALAKKDAGAGLRVIAEATESG 295 Query: 292 EERETIEDVLEPYLIQQGFLQ 312 E+ + L YL ++ Sbjct: 296 EDIHQLNRQLVAYLRTLLLIR 316 >UniRef50_C6RIQ9 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter showae RM3277 RepID=C6RIQ9_9PROT Length = 831 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 116/314 (36%), Gaps = 34/314 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 RP+ E VGQ V + + + +L L G G GKT+ A I + Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDENRLT----HAYLFSGLRGSGKTSSARIFS 58 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + + TS P + A +AA D++ +D I + ++E+ Y PA+ Sbjct: 59 KALVCDHGPTSQPCEQCANCIAA--NEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAI 116 Query: 131 EDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 ++ + ++ A ++ PP I ATT L + + R R Sbjct: 117 ARFKIFIIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHF-RFR 175 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 PD+ + + + +AR G+ R LL + +A+ G + Sbjct: 176 QISRPDVVAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAK----GEL 231 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + AQ L +L D + +LA++ P +A + E + D + Sbjct: 232 TQSAVAQMLGLL-------DPQRIEEILALVMS-GDKPAVSAAIAQLESYDAEMVIDEIT 283 Query: 303 PYLIQQGFLQRTPR 316 L + FL ++P+ Sbjct: 284 ANL-KANFLAQSPK 296 >UniRef50_B9ZJR0 DNA polymerase III, subunits gamma and tau n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJR0_9GAMM Length = 587 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 63/356 (17%), Positives = 109/356 (30%), Gaps = 49/356 (13%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E+ VGQP V + + +L L G G+GKTT+A Sbjct: 1 MSHQVLARKWRPGRFEDLVGQPHVVRALANALSGDRLH----HAYLFAGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I+A + T+ P E + D++ +D + +++ V Y Sbjct: 57 ILARCLNCETGITATPCGECRS--CVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYA 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P +++ ++ + A ++ PP + ATT L + R Sbjct: 115 PTAGRFKVYLIDEVHMLSEKSFNALLKTLEEPPDHVKFLLATTDPQKLPVTVLSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++R GL+ L + A G+ R A L + + Sbjct: 175 -LKPMPPALIAEHLTRILEAEGLQAEPGALLRLGEAAEGSMRDALSLTDQAIAY----GG 229 Query: 240 GTISADIAAQALDMLNVDAE---------GFDYMDRKLLLAVIDKFFGGPVGLDNLAA-A 289 ++ A L +L G + L + LD LAA Sbjct: 230 DRLTESDACDMLGLLPRTRLTGLLDAAFAGDGPGLMQGLQELKGLGPDWSRLLDELAALV 289 Query: 290 IGEERETI---EDVLEPYLIQQGFLQRTPRGR----------MATTRAWNHFGITP 332 E + E E + + + T R P Sbjct: 290 HRVAVEQLVRGEGGAEDDDAAERWARETA-ARIDAETLQLTYQILIHGARDLPWAP 344 >UniRef50_B4RU47 DNA polymerase III subunits gamma and tau n=5 Tax=Bacteria RepID=B4RU47_ALTMD Length = 930 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 107/318 (33%), Gaps = 31/318 (9%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP E VGQ V S + + +L L G G+GKTT+A Sbjct: 1 MSYQVLARKWRPGKFSELVGQEHVVSAISNALDNDRLH----HAYLFTGTRGVGKTTIAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I + + + P + + + D+L ID + +++ V Y Sbjct: 57 IFSKSLNCEEGQGANPCGQC--NTCKEIEQGNYVDLLEIDAASRTKVEDTRELLDNVQYK 114 Query: 128 PAMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P Y++ ++ A ++ PP + ATT L + R Sbjct: 115 PTRGRYKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFN 174 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 L+ + ++ + L +AR A+G+ R A L + + Sbjct: 175 -LKAMSREQIVGQLTHILQQEQLAFEAPALALLARAAQGSMRDALSLTDQAIA----QGG 229 Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 + A + L ++ K++ AV++K + L N A + + + Sbjct: 230 NQVMASVVTDMLGLM------DKNQLLKVIHAVVNKSPAEVLQLVNDIAEQAPDYDNVHS 283 Query: 300 VLEPYLIQQGFLQRTPRG 317 L L Q Q P Sbjct: 284 ELASLLHQIALTQWVPEA 301 >UniRef50_C6W6R9 DNA polymerase III, subunits gamma and tau n=3 Tax=Sphingobacteriales RepID=C6W6R9_DYAFD Length = 621 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 110/313 (35%), Gaps = 32/313 (10%) Query: 18 VADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77 V+ R RP + VGQ + + ++ I+ L L GP G+GKTT A I+A Sbjct: 6 VSARKYRPVTFDSVVGQSHITTTLKNAIRTNHL----AQAFLFCGPRGVGKTTCARILAK 61 Query: 78 EMGVNLRTTS-GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLYPAM- 130 + E + N ++ +D + + ++++V YP Sbjct: 62 TINCQNLGDDVEACGEC--ESCVSFQNNASFNIHELDAASNNSVEDIRNLIDQVRYPPQT 119 Query: 131 EDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y++ I + A ++ PP I ATT + + R I Sbjct: 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD-FN 178 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 Q D+ + + A+ G+ + + ++A G R A + F+ + + Sbjct: 179 RIQSKDIAHHLLDIAKKEGINAEHEALELIGQKADGGLRDALSMFDLNVTFST---NNHL 235 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + + L +L+ D F D ++ V D + + + +LE Sbjct: 236 TYAAVLENLHILDYDYY-FKITDALTAGSIARSL----VLFDEILRKGFDGHLFVVGLLE 290 Query: 303 PYLIQQGFLQRTP 315 + + + + P Sbjct: 291 HF--RNLLVCKDP 301 >UniRef50_B4S8V3 DNA polymerase III, subunits gamma and tau n=11 Tax=Chlorobiaceae RepID=B4S8V3_PROA2 Length = 617 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 112/329 (34%), Gaps = 37/329 (11%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + V R RP + Q + ++ ++ ++ + G G+GKTT A Sbjct: 1 MSYQVIARKYRPSKFADITAQEHITHTIQNALRLDRVG----HGYIFSGLRGVGKTTAAR 56 Query: 74 IVANEMGVNLRTTS--------GPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSP 120 + A + P E + ++ D + + Sbjct: 57 VFAKAVNCQKMIDDPVYRQEVTEPCGEC--ESCLDFDAGTSLNISEFDAASNNSVDDIRQ 114 Query: 121 VVEEVLY-PAMEDYQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPL 171 + E V Y P Y++ I + A ++ PP I ATT + + + Sbjct: 115 LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPSHAIFIFATTELHKIPATI 174 Query: 172 RDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVR 231 R + + ++Q + R L++SDD L +AR+A+G+ R A +L +V Sbjct: 175 SSRCQRFN-FKRIPIGEIQSQLQMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVI 233 Query: 232 DFA-EVKHDGTISADIAAQALDMLNVDA-----EGFDYMDRKLLLAVIDKFFGGPVGLDN 285 F+ + I+ A+ L+ ++ D + D +L V + Sbjct: 234 AFSVGNDAEKVIAYQGVAELLNYIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQD 293 Query: 286 LAAAIGEERETIEDVLEPYLIQQGFLQRT 314 + E ++ L ++RT Sbjct: 294 FLEKLIEHFRN--FLVLYNLRSTRLIERT 320 >UniRef50_C5ZV42 DNA polymerase III subunits gamma and tau n=2 Tax=Helicobacter RepID=C5ZV42_9HELI Length = 586 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 120/338 (35%), Gaps = 43/338 (12%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 + RP +E VGQ V + + +++ +L L G G GKT+ A I A Sbjct: 5 EALALKYRPMDFDELVGQESVSRTLSLALESKRLS----HAYLFSGLRGSGKTSSARIFA 60 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAM 130 + + P A +AA + D++ +D I + ++E+ Y P M Sbjct: 61 RALQCEKGPKAKPCGVCANCIAANPHKMRHIDIIELDGASSRKIDDIRDLIEQTKYHPNM 120 Query: 131 EDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 Y+ + ++ E A ++ PP I ATT L + + R R + Sbjct: 121 GRYKIFIIDEVHMLTKEAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHF-RFK 179 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 ++ + + D+ + R G+ R LL +V ++ I Sbjct: 180 RISEKNIFEHLKNILHKENITYQDEALNMLIRSGSGSLRDTLTLLDQVIIYSNYN----I 235 Query: 243 SADIAAQALDMLNVDAEG--FDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV 300 +AD A L ++N + F+ + +K +++ G E E + D Sbjct: 236 TADSCANMLGLINPQSLNMLFEEIFKKDKESLLKHIEG----------FSEYECEMLLDE 285 Query: 301 LEPYLIQQGFLQRTPR------GR--MATTRAWNHFGI 330 + +L ++ R R T+A + Sbjct: 286 MAIFLKEKLLRGEDTRYSATIIDRFFRIITQAKELLSL 323 >UniRef50_B1VIS6 DNA polymerase III, gamma and tau subunits n=10 Tax=Corynebacterineae RepID=B1VIS6_CORU7 Length = 1102 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 118/331 (35%), Gaps = 28/331 (8%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RP E VGQ V + + + + ++ L GP G GKT+ A I+A Sbjct: 3 LYRKYRPASFAEVVGQEHVTEPLSVALDSGRIN----HAYLFSGPRGCGKTSSARILARS 58 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + TS P + +A DV +D + + + + Y PA Sbjct: 59 LNCVEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYAPADSR 118 Query: 133 YQL------DIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ ++ EG ++ PP I ATT L + +R R Sbjct: 119 YRVFIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNY-PFRLL 177 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 PD++ ++ R G + D V R G+PR + ++ ++ A + ++ Sbjct: 178 TPPDMRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGPEG---VTY 234 Query: 245 DIAAQALD-----MLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLA-AAIGEERETIE 298 A L +L+ AE D+ L AV+D A + R+ + Sbjct: 235 QRAVALLGVTDSSLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDLLDRFRDLLV 294 Query: 299 DVLEPYLIQQGFLQRTPRGRMATTRAWNHFG 329 P ++G + + + A + G Sbjct: 295 VQAVPDAFERGLVDVPAQEQDALRQQAEALG 325 >UniRef50_B6BTP5 DNA polymerase subunits gamma and tau n=1 Tax=beta proteobacterium KB13 RepID=B6BTP5_9PROT Length = 512 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 114/301 (37%), Gaps = 30/301 (9%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RPK E VGQ + ++ I +L L+ G G+GKTT+A I A Sbjct: 6 LARKWRPKNFETIVGQEFIVEALKNSILGDRLH----HAYLLSGTRGVGKTTIARIFAKC 61 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY-PAMED 132 + + + P E + + + DV+ +D + + ++E Y P Sbjct: 62 LNCHTGSNPTPCCECSS--CVEIDQSKSIDVIELDAASNTQVDNMRELLENANYQPTSSK 119 Query: 133 YQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y+ + ++ A ++ PP I ATT + + R L Sbjct: 120 YKIFIIDEVHMLSKSSFNAMLKTLEEPPEHVIFILATTDPEKIPVTVISRCLHFN-LMQM 178 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 ++ + + D+ +++ A G+ R A L RV ++ +G +S Sbjct: 179 TNDEISGQLQNIFYEENIAYEDEAINMISKHADGSMRDALSLADRVINYT----NGNVSL 234 Query: 245 DIAAQALDMLN---VDAEGFDYMD--RKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299 + Q L + + +D + +D ++ +L +++K + ++ + E+ I + Sbjct: 235 EKLTQILGITSDGVIDELLTNILDNNKQKVLDLLNKLKEHHISYESALKVLSEKIFAISE 294 Query: 300 V 300 Sbjct: 295 E 295 >UniRef50_UPI00017455DA DNA polymerase III, gamma and tau subunits n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017455DA Length = 676 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 102/316 (32%), Gaps = 31/316 (9%) Query: 15 PEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANI 74 V R RP+ E+ +GQ V + I +L L GP G GKT+ A I Sbjct: 16 SYQVFARKYRPRTFEDVLGQDHVVRTLRNAIAQNRL----AHAYLFVGPRGTGKTSTARI 71 Query: 75 VANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEV-LYP 128 A + + ++ + DV ID + ++ + EEV P Sbjct: 72 FAKALNCPNGP--RVDFDPDDEVCVEIEKGISLDVREIDGASNNGVEQVRELREEVKFAP 129 Query: 129 AMEDYQLD------IMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQR 180 Y++ ++ A ++ PP I ATT A + + R Sbjct: 130 TRCRYKIYYIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEAHKVLPTIISRCQRFD- 188 Query: 181 LEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG 240 L + + A + +S+ A +A+ A G R A +L ++ F Sbjct: 189 LRRIPAGLIAKHLLHIATLEKVALSEKAAYAIAKGAEGGMRDAQSMLDQLVAFC----GE 244 Query: 241 TISADIAAQALDMLN---VDAEGFDYMDRKLLLAVIDKFFGGPVGLD---NLAAAIGEER 294 I V +DR + A+ + G D L I R Sbjct: 245 RIEEQDVLDIFGFTRGETVANLAARVLDRDTVGALKELHSQADTGKDLGRLLTDLIQHFR 304 Query: 295 ETIEDVLEPYLIQQGF 310 + ++P ++ Sbjct: 305 TLLVHQVDPAAAEEDL 320 >UniRef50_A6LMU3 DNA polymerase III, subunits gamma and tau n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMU3_THEM4 Length = 460 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 112/300 (37%), Gaps = 27/300 (9%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R RPK E VGQ V+ +K ++ + GP G GKTT+A I+A Sbjct: 4 LYRKYRPKKFLELVGQSHVKKLFVNSLKNKEIS----HAYIFAGPRGTGKTTVARILAKS 59 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLYP-AMED 132 + P + + DVL +D I + + E V Y A Sbjct: 60 LNCENPQEIEPCNMCNACI--SIDKGNFMDVLELDAASNRGIDEIRKIRETVNYHTAQGK 117 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + E A ++ PP I ATT + + R ++ + Sbjct: 118 YKVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVID-FKNI 176 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 D+ + G+++S + +E+++RA G R A +L +V + A I Sbjct: 177 SNKDIIKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSA----GKDIKI 232 Query: 245 DIAAQALDMLN--VDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + + L ++ + + + ++ + + + NL + + E + ++E Sbjct: 233 EDVRETLGLIPDTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKLISLVE 292 >UniRef50_B9D4Q0 DNA polymerase III subunit gamma/tau n=1 Tax=Campylobacter rectus RM3267 RepID=B9D4Q0_WOLRE Length = 906 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 118/314 (37%), Gaps = 34/314 (10%) Query: 17 DVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVA 76 RP+ E VGQ V + + + ++L L G G GKT+ A I + Sbjct: 3 QALALRYRPRNFSELVGQEAVSTSLTHALDESRLT----HAYLFSGLRGSGKTSSARIFS 58 Query: 77 NEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAM 130 + + TS P + A +AA D++ +D I + ++E+ Y PA+ Sbjct: 59 KALVCDHGPTSRPCEQCANCIAA--NEGRHIDIIEMDAASHRGIDDIKGLIEQTKYAPAI 116 Query: 131 EDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLE 182 ++ + ++ A ++ PP I ATT L + + R R Sbjct: 117 ARFKIFIIDEVHMLSTPAFNALLKTLEEPPPYVKFILATTDPLKLPATVLSRTQHF-RFR 175 Query: 183 FYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTI 242 PD+ + + + +AR G+ R LL + +A+ G + Sbjct: 176 QISRPDVVAHLDFILNRENVPHEKEALEILARSGAGSLRDTLTLLDQAIIYAK----GEL 231 Query: 243 SADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLE 302 + + AQ L +L D + +LA++ V +A + E + D + Sbjct: 232 TQSVVAQMLGLL-------DPQRIEEILALVMSGDKSAVSA-AVAQLESYDAEMVIDEIT 283 Query: 303 PYLIQQGFLQRTPR 316 L + FL ++P+ Sbjct: 284 ANL-KANFLAQSPK 296 >UniRef50_C3XKJ2 DNA polymerase III gamma and tau n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XKJ2_9HELI Length = 587 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 114/300 (38%), Gaps = 30/300 (10%) Query: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73 + + RP +E VGQ V + + + + +L L G G GKT+ A Sbjct: 1 MEQQALALKYRPMDFDELVGQEAVSRTLSLALDSKRLS----HAYLFSGLRGSGKTSSAR 56 Query: 74 IVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE-----IHRLSPVVEEVLY- 127 I A + S P A LAA + D++ +D I + ++E+ Y Sbjct: 57 IFARALQCESGPRSKPCGTCANCLAANPHKMSHIDIMELDGASNRKIDDIRDLIEQTKYH 116 Query: 128 PAMEDYQ------LDIMIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQ 179 P + ++ + ++ E A ++ PP I ATT L + + R Sbjct: 117 PNIGRFKIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHF- 175 Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239 R + + + + + + ++ + R G+ R LL + ++ Sbjct: 176 RFKRISDRSIFEHLKKILQNEQIPYQEEALGMLIRSGAGSLRDTLTLLDQAIIYSSYN-- 233 Query: 240 GTISADIAAQALDMLNVDAEG-----FDYMDRKLLLAVIDKFFGGPVG--LDNLAAAIGE 292 +++++ A L ++N ++ DR LL +++ FF G LD ++ + E Sbjct: 234 --VTSEVCANMLGLINAESLNALFECIFTQDRDSLLKMLEGFFEYECGMLLDEMSIFLKE 291 >UniRef50_B0MPA0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPA0_9FIRM Length = 743 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 90/255 (35%), Gaps = 27/255 (10%) Query: 19 ADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANE 78 R R +E + Q + + ++ IKA L G G GKTT A ++A Sbjct: 5 LYRKYRSATFDEVISQEHITTTLKNQIKAG----TPAHAYLFTGSRGTGKTTCAKLMAKA 60 Query: 79 MGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFID-----EIHRLSPVVEEVLY-PAMED 132 + P E + + D++ +D + + + +EV+Y P + Sbjct: 61 VNCLSPVDGNPCGEC--ESCKAIAAG-CPDIIEMDAASNNGVDDVRALRDEVMYAPTVCR 117 Query: 133 YQLDI------MIGEGPAARSIKIDLPP--FTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184 Y++ I + + A I+ PP I ATT + + + R R Sbjct: 118 YKVYIIDEVHMLSSQAFNALLKTIEEPPPHVIFILATTEIHKVPATIASRCQQF-RFSRI 176 Query: 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244 V + + A+ + +++D A ++R + G R A LL + + I Sbjct: 177 DVEESTKRLCEIAKKENVNITEDAARLISRLSDGGMRDAVSLLDQCISVSAD-----IDE 231 Query: 245 DIAAQALDMLNVDAE 259 + + + Sbjct: 232 ETVRTTAGIAGTEHL 246 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.163 0.484 Lambda K H 0.267 0.0503 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,994,353,140 Number of Sequences: 3077464 Number of extensions: 81848589 Number of successful extensions: 427895 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5064 Number of HSP's successfully gapped in prelim test: 6871 Number of HSP's that attempted gapping in prelim test: 399245 Number of HSP's gapped (non-prelim): 16320 length of query: 336 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 207 effective length of database: 643,403,500 effective search space: 133184524500 effective search space used: 133184524500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 94 (40.5 bits)