5 c3pvsA_ Probab=100.00  E-value=1.6e-36  Score=221.80  Aligned_columns=268  Identities=25%

Q ss_pred             HHHCCCCCCCHHHHCCCHHHHHH---HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECC--
Q ss_conf             55221268987782280999999---9999985330356788089975998888899999999838980797100013--
Q batch____        18 VADRAIRPKLLEEYVGQPQVRSQ---MEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLE--   92 (336)
Q Consensus        18 ~~~~k~rP~~~~divG~e~~~~~---l~~~i~~~~~~~~~~~~ill~GppGtGKTtla~~ia~~l~~~~~~i~~~~~~--   92 (336)
                      .+..+|||++|+|||||++++..   |+.++..+     .+++++|+|||||||||+|+++++.++.+|+.+++....  
T Consensus         2 PLa~r~RP~~l~divGq~~~~~~~~~L~~~i~~~-----~~~slIL~GppGtGKTtlA~~iA~~~~~~fi~ina~~~~v~   76 (414)
T c3pvsA_           2 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVK   76 (414)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHH
T ss_pred             CHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             9324646687756108299998899999999759-----99849997698898899999999971998999975447989


Q ss_pred             ---CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCEEEEEECC-CCCCC
Q ss_conf             ---26674567653024675328999850077652001332133343310134676651112467138874057-22376
Q batch____        93 ---KAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTR-AGSLT  168 (336)
Q Consensus        93 ---~~~~~~~~~~~~~~~~~~~~de~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~  168 (336)
                         ..-.............++|+||++.+                          .+...++...+.+|++|+. +....
T Consensus        77 ~ir~ii~~a~~~~~~~~~~ILfIDEi~rl--------------------------aLL~~lE~~~iilI~aTten~~~~i  130 (414)
T c3pvsA_          77 EIREAIERARQNRNAGRRTILFVDEVHRF--------------------------AFLPHIEDGTITFIGATTENPSFEL  130 (414)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------------CCHHHHHTTSCEEEEEESSCGGGSS
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHH--------------------------HHHHHHHCCCEEEEEEECCCCHHHC
T ss_conf             99999999875111258808998413576--------------------------6578754498489998267604416


Q ss_pred             HHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             02211110001156899899999999999982-------89871799999999839998999999999999997418687
Q batch____       169 SPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM-------GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGT  241 (336)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~ia~~~~G~~r~a~~ll~~~~~~a~~~~~~~  241 (336)
                      ...+.+++..+.|.+++.+++..++.+.+...       +..+++++++.|++.++||+|.++++|+.++..+.......
T Consensus       131 ~~aL~SR~~vi~l~~ls~edi~~il~~~l~~~~~~~~~~~i~i~d~al~~Ia~~s~GD~R~aLn~LE~a~~~a~~~~~~~  210 (414)
T c3pvsA_         131 NSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGK  210 (414)
T ss_dssp             CHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSC
T ss_pred             CHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             98888300067716899899999999999999987087898669899999998579998999999999999514667665


Q ss_pred             --CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             --599999999976086735889899999999999821684458999987085889999875457775446301874143
Q batch____       242 --ISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRM  319 (336)
Q Consensus       242 --i~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~li~~~~i~~~~~gr~  319 (336)
                        ++.+.+.++.+..   .....+.+.+.++++.+++++++..     +++-+..++++...+|..|.          |+
T Consensus       211 ~~i~~~~v~~~~~~~---~d~~gd~hYd~iSA~~KSiRgsD~d-----aal~~lar~l~~gedp~~i~----------Rr  272 (414)
T c3pvsA_         211 RVLKPELLTEIAGER---SARKGDRFYDLISALHKSVRGSAPD-----AALYWYARIITAGGDPLYVA----------RR  272 (414)
T ss_dssp             EECCHHHHHHHHTCC---CCCCCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTCCHHHHH----------HH
T ss_pred             HHCCHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHCCCCHHHHH----------HH
T ss_conf             548999999986220---4766678999999999987437865-----79999999997489889999----------99


Q ss_pred             HHHHHHHHCCCCCCC
Q ss_conf             799899883899999
Q batch____       320 ATTRAWNHFGITPPE  334 (336)
Q Consensus       320 ~~~~~~e~lg~~~~~  334 (336)
                      +...|.|++|+..|+
T Consensus       273 l~~~asEdiGladp~  287 (414)
T c3pvsA_         273 CLAIASEDVGNADPR  287 (414)
T ss_dssp             HHHHHHHTTGGGCTH
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             999987531355700