BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (95 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64576 Uncharacterized protein yghW n=89 Tax=Enterobact... 199 2e-50 UniRef50_B7LPW9 Putative uncharacterized protein yghW n=10 Tax=E... 182 3e-45 UniRef50_D0KE57 Putative uncharacterized protein n=6 Tax=Enterob... 103 1e-21 UniRef50_C5BBK2 Putative uncharacterized protein n=2 Tax=Edwards... 64 2e-09 >UniRef50_P64576 Uncharacterized protein yghW n=89 Tax=Enterobacteriaceae RepID=YGHW_ECO57 Length = 95 Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/95 (100%), Positives = 95/95 (100%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL Sbjct: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN Sbjct: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 >UniRef50_B7LPW9 Putative uncharacterized protein yghW n=10 Tax=Enterobacteriaceae RepID=B7LPW9_ESCF3 Length = 134 Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/95 (89%), Positives = 91/95 (95%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 MNNHFGKGLMAGL ATHADSA +V KFCADYKRGFVLG+SHRMYEKTGDRQLSAWEAGIL Sbjct: 40 MNNHFGKGLMAGLNATHADSAQSVAKFCADYKRGFVLGFSHRMYEKTGDRQLSAWEAGIL 99 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 T+RYGLDK+MVMDFFRENNS +TLRFFMAGYRLE+ Sbjct: 100 TKRYGLDKDMVMDFFRENNSSTTLRFFMAGYRLEH 134 >UniRef50_D0KE57 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=D0KE57_PECWW Length = 97 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 66/91 (72%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 M NHF +G++AGL++ + S ++ +C DY+RG++ GY+H + E GDRQ +A+EAG+L Sbjct: 1 MGNHFERGVLAGLRSANPKSTNDINPYCYDYRRGYICGYAHNLAETKGDRQQAAFEAGLL 60 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGY 91 +RRYGL++E V +FF E + +RFF AGY Sbjct: 61 SRRYGLERERVAEFFTEQGNPYAIRFFYAGY 91 >UniRef50_C5BBK2 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BBK2_EDWI9 Length = 95 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 2 NNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGILT 61 NHFG G+M G+K A + + C DY+RG+V G+S+ + +R ++A AG Sbjct: 3 KNHFGDGVMDGVKCYEPCGAGEMRRRCFDYRRGYVCGFSYSFARRIDNRYMAACRAGERA 62 Query: 62 RRYGLDKEMVMDFFRENNSCSTLRFFMAGY 91 R YGL+++ + FF R++ GY Sbjct: 63 RLYGLERDAIAGFFLSGEDSQLQRYYYTGY 92 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LPW9 Putative uncharacterized protein yghW n=10 Tax=E... 158 7e-38 UniRef50_P64576 Uncharacterized protein yghW n=89 Tax=Enterobact... 147 1e-34 UniRef50_D0KE57 Putative uncharacterized protein n=6 Tax=Enterob... 130 1e-29 UniRef50_C5BBK2 Putative uncharacterized protein n=2 Tax=Edwards... 120 1e-26 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B7LPW9 Putative uncharacterized protein yghW n=10 Tax=Enterobacteriaceae RepID=B7LPW9_ESCF3 Length = 134 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 85/95 (89%), Positives = 91/95 (95%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 MNNHFGKGLMAGL ATHADSA +V KFCADYKRGFVLG+SHRMYEKTGDRQLSAWEAGIL Sbjct: 40 MNNHFGKGLMAGLNATHADSAQSVAKFCADYKRGFVLGFSHRMYEKTGDRQLSAWEAGIL 99 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 T+RYGLDK+MVMDFFRENNS +TLRFFMAGYRLE+ Sbjct: 100 TKRYGLDKDMVMDFFRENNSSTTLRFFMAGYRLEH 134 >UniRef50_P64576 Uncharacterized protein yghW n=89 Tax=Enterobacteriaceae RepID=YGHW_ECO57 Length = 95 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 95/95 (100%), Positives = 95/95 (100%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL Sbjct: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN Sbjct: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN 95 >UniRef50_D0KE57 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=D0KE57_PECWW Length = 97 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 43/91 (47%), Positives = 66/91 (72%) Query: 1 MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGIL 60 M NHF +G++AGL++ + S ++ +C DY+RG++ GY+H + E GDRQ +A+EAG+L Sbjct: 1 MGNHFERGVLAGLRSANPKSTNDINPYCYDYRRGYICGYAHNLAETKGDRQQAAFEAGLL 60 Query: 61 TRRYGLDKEMVMDFFRENNSCSTLRFFMAGY 91 +RRYGL++E V +FF E + +RFF AGY Sbjct: 61 SRRYGLERERVAEFFTEQGNPYAIRFFYAGY 91 >UniRef50_C5BBK2 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BBK2_EDWI9 Length = 95 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 2 NNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGILT 61 NHFG G+M G+K A + + C DY+RG+V G+S+ + +R ++A AG Sbjct: 3 KNHFGDGVMDGVKCYEPCGAGEMRRRCFDYRRGYVCGFSYSFARRIDNRYMAACRAGERA 62 Query: 62 RRYGLDKEMVMDFFRENNSCSTLRFFMAGY 91 R YGL+++ + FF R++ GY Sbjct: 63 RLYGLERDAIAGFFLSGEDSQLQRYYYTGY 92 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.140 0.389 Lambda K H 0.267 0.0430 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 380,402,882 Number of Sequences: 3077464 Number of extensions: 12813236 Number of successful extensions: 36448 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36439 Number of HSP's gapped (non-prelim): 9 length of query: 95 length of database: 1,040,396,356 effective HSP length: 64 effective length of query: 31 effective length of database: 843,438,660 effective search space: 26146598460 effective search space used: 26146598460 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 87 (38.1 bits)