BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (216 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130... 441 e-122 UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 ... 285 7e-76 UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoni... 186 6e-46 UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein Rs... 160 4e-38 UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA ... 156 5e-37 UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein Rs... 156 6e-37 UniRef50_P44791 Sigma-E factor negative regulatory protein homol... 155 1e-36 UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment... 141 2e-32 UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=A... 136 4e-31 UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 T... 132 7e-30 UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 T... 128 2e-28 UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=M... 122 9e-27 UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella R... 118 2e-25 UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulat... 117 3e-25 UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 ... 106 4e-22 UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 T... 104 2e-21 UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas ... 89 9e-17 UniRef50_UPI0000E1152A sigma-E factor negative regulatory protei... 79 9e-14 UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negativ... 78 2e-13 UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=... 64 5e-09 UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB ... 62 2e-08 UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA ... 60 7e-08 UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma p... 58 2e-07 UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosoco... 57 4e-07 UniRef50_Q1QX28 Negative regulator of sigma E activity-like prot... 54 4e-06 UniRef50_A0YCK7 Sigma factor algU negative regulatory protein Mu... 54 5e-06 UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 53 6e-06 UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepI... 53 6e-06 UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=S... 53 8e-06 UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellace... 53 8e-06 UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilac... 52 1e-05 UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus... 52 1e-05 UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax... 52 1e-05 UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae Rep... 52 2e-05 UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas tes... 51 2e-05 UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatiu... 51 2e-05 UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 51 3e-05 UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisr... 50 5e-05 UniRef50_UPI0001699368 sigma-E factor negative regulatory protei... 50 6e-05 UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1... 49 2e-04 UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnico... 48 3e-04 UniRef50_Q2SL39 Sigma factor algU negative regulatory protein Mu... 48 3e-04 UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella kor... 47 5e-04 UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitr... 47 6e-04 UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophila... 46 7e-04 UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas ... 46 7e-04 UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera... 46 8e-04 UniRef50_P38107 Sigma factor algU negative regulatory protein n=... 46 9e-04 UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococc... 45 0.001 UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobac... 45 0.001 UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acido... 45 0.002 UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA ... 44 0.003 UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 ... 44 0.003 UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae spe... 44 0.003 UniRef50_A0Z441 Sigma factor algU negative regulatory protein Mu... 44 0.005 UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=I... 43 0.008 UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadacea... 43 0.009 UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromob... 43 0.009 UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 ... 42 0.018 UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax... 41 0.024 UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisser... 41 0.025 UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putat... 40 0.038 UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiac... 40 0.054 >UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130 Tax=Enterobacteriaceae RepID=RSEA_ECOL6 Length = 216 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM Sbjct: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH Sbjct: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY Sbjct: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 Query: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ Sbjct: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 >UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 Tax=Enterobacteriaceae RepID=A1JKJ7_YERE8 Length = 218 Score = 285 bits (729), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 138/218 (63%), Positives = 168/218 (77%), Gaps = 2/218 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSALMDGETLDSEL+ L+ + +Q++W+SYHLIRD++RGD EVLH DI+SRV Sbjct: 1 MQKEKLSALMDGETLDSELIGSLSKDKALQQSWQSYHLIRDTLRGDVGEVLHLDIASRVA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++ EP R +PE+QP PH WQKMPFWQKVRPWA+Q+TQ+GVAACVSLAVIVGVQ Sbjct: 61 EALKNEPARFVPIAVPESQPQPHVWQKMPFWQKVRPWASQITQVGVAACVSLAVIVGVQQ 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAM--LQ 178 YN + + QPE P FNTLPMMGKASPVS GVP++ + QQ QVQEQRRR+N M LQ Sbjct: 121 YNQPASGNLQPEAPAFNTLPMMGKASPVSFGVPADGSFGTSQQHQVQEQRRRVNMMTQLQ 180 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 D+ELQRRL + + + QAA+QVPG Q+LG Q Q Sbjct: 181 DFELQRRLPQTDVSQVPSASTQAAIQVPGTQSLGMQQQ 218 >UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoniae RepID=D2TX84_9ENTR Length = 208 Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 137/186 (73%), Gaps = 1/186 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 M +E+LSALMDGE DSEL++ + + +QK WESYHLIRDS+RGD EV+H DI+ +V Sbjct: 1 MHRERLSALMDGEIFDSELIHTILQDVSLQKRWESYHLIRDSLRGDINEVIHLDITGKVE 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A+ EP++ IPE+QP P W+ MPFW+K+RPWA Q+TQ+GVAA V++AVI GVQ+ Sbjct: 61 QALASEPIQIAPDAIPESQPEPATWRLMPFWRKLRPWANQITQVGVAASVAVAVIAGVQN 120 Query: 121 YNGQS-ETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 YN + ET + ++P+FNT+P+MG ASPVSL V ++ Q +Q++++ RR+ MLQ Sbjct: 121 YNTSNIETDGKSDSPIFNTVPIMGAASPVSLNVSNDQLFAQPQTEQLEQRNRRLGLMLQQ 180 Query: 180 YELQRR 185 YEL+RR Sbjct: 181 YELERR 186 >UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein RseA n=9 Tax=Vibrionaceae RepID=D0YVX7_LISDA Length = 216 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 124/212 (58%), Gaps = 19/212 (8%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE++SAL+DGE LD ++N L + E + +W Y+LI D MRGD P+ +DI++ V Sbjct: 3 DKEKISALLDGEDLDQSIINALTVDKESELSWHDYNLIGDVMRGDAPQCKEWDIAANVAL 62 Query: 62 AIEEEPVR----------QPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVS 111 A++ EP Q A I E+QP P Q ++ + W Q Q+ VAACVS Sbjct: 63 ALDAEPAHSVSTAEVVDIQVAKDIVESQPTPQQAKRF-----LPAWLTQFGQVAVAACVS 117 Query: 112 LAVIVGVQHYNG-QSETSQQPET-PVFNTLPMMGKASPVSLGVPSEATANNG--QQQQVQ 167 LAVIVGVQ YNG S + PET PV T+P GKA PVS S +++ + Q+ Sbjct: 118 LAVIVGVQQYNGSDSNATNAPETMPVLQTIPFAGKAEPVSFTRDSLRNSHSSAPSEAQLM 177 Query: 168 EQRRRINAMLQDYELQRRLHSEQLQFEQAQTQ 199 EQRRRINAMLQDYELQ R ++E ++ + + Sbjct: 178 EQRRRINAMLQDYELQLRFNAEDGSIDKTKLE 209 >UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA n=47 Tax=Vibrionales RepID=A5F5G6_VIBC3 Length = 212 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 18/197 (9%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KE+LSALMDGE +D+EL+ LA + + + TW++YHLI D +RG+ P ++I+ V A Sbjct: 10 KEKLSALMDGEMIDNELILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWNIAESVALA 69 Query: 63 IEEEPVRQP----ATLIP------EAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 +E EP P +I EAQP P Q ++ ++ W +Q Q+G+AACVSL Sbjct: 70 LENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKR-----QLPAWLSQFGQVGIAACVSL 124 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 AVI GVQ Y GQS + + E PV T+P+ G A PVSL ++ + +QEQRRR Sbjct: 125 AVIFGVQQYGGQS-SGVENELPVLQTIPLAGSAEPVSL--TRDSVEKHAPDSSMQEQRRR 181 Query: 173 INAMLQDYELQRRLHSE 189 +NA+LQDYELQ RL+SE Sbjct: 182 VNALLQDYELQLRLNSE 198 >UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein RseA n=2 Tax=Vibrionaceae RepID=C9PL53_VIBFU Length = 213 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 122/201 (60%), Gaps = 19/201 (9%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KE+LSALMDGE +D L+ ELA + + TW++YHLI D +RG+ PE ++I+ V A Sbjct: 8 KEKLSALMDGELVDKLLIQELASDRDGLDTWKNYHLIGDVLRGEAPERPEWNIAESVALA 67 Query: 63 IEEEPVRQP-ATLIP----------EAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVS 111 +E EP +T P E+QP P Q ++ ++ W +Q Q+ VAACVS Sbjct: 68 LENEPAHSTFSTATPHITDINQARIESQPKPEQARR-----QLPAWLSQFGQVAVAACVS 122 Query: 112 LAVIVGVQHYNG-QSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQR 170 LAVI+GVQ Y G T QQ + PV T+P G A PVSL E+ + + VQEQR Sbjct: 123 LAVILGVQQYGGTDGATPQQDQLPVLQTIPFSGSAEPVSL--TRESVERHSNEANVQEQR 180 Query: 171 RRINAMLQDYELQRRLHSEQL 191 RR+NA+LQDYELQ RL+SE L Sbjct: 181 RRVNALLQDYELQLRLNSENL 201 >UniRef50_P44791 Sigma-E factor negative regulatory protein homolog n=16 Tax=Haemophilus influenzae RepID=RSEA_HAEIN Length = 195 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 4/199 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSA MDGE ++++L++ L + E+Q +W S+H +R MR ++ L D ++++ Sbjct: 1 MQKEQLSAYMDGEQVETDLIDALLRDEELQASWHSFHTVRSVMRKESAVFLGADFTAKMA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 IE E V++ +I +QP P F QK++ + A +TQ+ VAA V L ++GVQ Sbjct: 61 DLIELEDVKK-VDVIAVSQPEPEDAHNSVFMQKLKAFFAPMTQVAVAAGVCLVAVLGVQS 119 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 +N +++ S PETPV TLP VS PS+ T + Q++++ RRI AMLQ+Y Sbjct: 120 FNNKNDASNLPETPVLQTLPFNNAVQEVSYNAPSKDTLTS---DQLEKKSRRIGAMLQNY 176 Query: 181 ELQRRLHSEQLQFEQAQTQ 199 ELQRR+HS+ L +Q + Sbjct: 177 ELQRRMHSDALDVSSSQVR 195 >UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment) n=1 Tax=Vibrio shilonii AK1 RepID=A6D8F8_9VIBR Length = 167 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/171 (47%), Positives = 106/171 (61%), Gaps = 12/171 (7%) Query: 33 WESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIP-EAQPAPHQWQKMPFW 91 W +YHLI D MRGD P+ L ++I+ V +A+E EP ++P E+QP P Q +++ Sbjct: 1 WHNYHLIGDVMRGDEPQSLDWNIAESVASALENEPAHTSDIVMPIESQPTPSQAKRL--- 57 Query: 92 QKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPET---PVFNTLPMMGKASPV 148 + W Q Q+ VAACVSLAVI+GVQ Y+GQ QPE PV T+P G A PV Sbjct: 58 --LPAWITQFGQVAVAACVSLAVILGVQQYSGQDPA--QPEAEQLPVLQTIPFAGSAEPV 113 Query: 149 SLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQ 199 SL S A ++N + VQEQRRRINA+LQDYELQ RL+SE A T+ Sbjct: 114 SLTRDSVAKSSN-ESVNVQEQRRRINALLQDYELQLRLNSEDNASHSADTE 163 >UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=Aeromonadaceae RepID=A4SRD7_AERS4 Length = 197 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 118/193 (61%), Gaps = 16/193 (8%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KEQLSALMDG+ D E+L EL +P +Q TW YHLI D+MRGD P L D+S +MAA Sbjct: 4 KEQLSALMDGDLSDVEVLGELGMDPALQDTWSRYHLIGDAMRGDLPVNLQLDLSDSIMAA 63 Query: 63 IEEEPVR---QPATLIPEAQPAPHQWQK-MPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +E+EP +P P A P H K +P +++V Q+ Q +AA V+ AVI GV Sbjct: 64 LEDEPTILAPKPVESKPTA-PQVHTAAKVVPLFRRV---GQQVGQYAIAASVAAAVIFGV 119 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQ-----QQVQEQRRRI 173 Q Y GQ P PV NT+P+ G +SPVS+ P + + +Q QQ+QEQR RI Sbjct: 120 QQYQGQDGI---PTNPVLNTIPVGGSSSPVSVHYPQDGNRASTRQQGLSEQQMQEQRERI 176 Query: 174 NAMLQDYELQRRL 186 NA L+D++LQ+RL Sbjct: 177 NAFLRDHQLQQRL 189 >UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 Tax=Pasteurellaceae RepID=Q0I576_HAES1 Length = 233 Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 6/192 (3%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE LSA +DGE ++ + L N ++Q +W +YHLIR +R ++ +L D ++R+ Sbjct: 40 MQKELLSAYIDGEHCGNKFTDTLCQNKDLQNSWSNYHLIRSIIRKESKVLLGSDFTARMG 99 Query: 61 AAIE-EEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 I+ EE ++ +L E+QP + +K+PF QK+R + + QM VAA V ++GVQ Sbjct: 100 TLIKQEEKIQIEHSL--ESQPTLAEVEKLPFIQKIRSSFSPMLQMAVAATVCFVAVLGVQ 157 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 +N + +TP TLP +S +P + Q+QV+++ +RI MLQ+ Sbjct: 158 SFNHERAGKNTLDTPTLQTLPFNNSVQEISYNIPRKEIIT---QEQVEQRNKRIGIMLQN 214 Query: 180 YELQRRLHSEQL 191 YELQRRLH+ Sbjct: 215 YELQRRLHTNSF 226 >UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKN4_ALISL Length = 205 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 106/194 (54%), Gaps = 16/194 (8%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 K ++SA +D E +D+ + L+ + TW +YHLI D MRGD P ++I++ V Sbjct: 3 DKAKISAFIDNEEMDNAFIASLSETSNAE-TWANYHLIGDVMRGDAPSSKEWNIAANVAL 61 Query: 62 AIEEEPVRQ----PATLIPEAQPAPHQWQK-MPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 A+E+E Q IP +QP P + +K MP W Q +Q+ +AAC SL VIV Sbjct: 62 ALEDEAAHQMNDNVTAFIP-SQPTPSEAKKTMP------SWLTQFSQVAMAACFSLVVIV 114 Query: 117 GVQHYNGQSETS--QQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRIN 174 GVQ YN + V +T+P G A PVSL S + + V EQR+RIN Sbjct: 115 GVQQYNNDDPNGIPTSGDIQVLDTIPFSGSAEPVSLTRDS-LVPKSSNEADVMEQRKRIN 173 Query: 175 AMLQDYELQRRLHS 188 AMLQDYELQ RL++ Sbjct: 174 AMLQDYELQLRLNA 187 >UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=Moritella sp. PE36 RepID=A6FDN6_9GAMM Length = 182 Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 25/195 (12%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 ++KE+LS+++D E +D+ LL+EL + + +W+ YH+I D MRG+TP ++ D++ + Sbjct: 2 IEKERLSSIVDNEYIDAALLDELGKDEALASSWQHYHMIGDVMRGETPATVNLDLTRAIT 61 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKV-RPWAAQLTQMGVAACVSLAVIVGVQ 119 AAI EE PA ++P+ F+QKV +PW Q +AA V+L VI GVQ Sbjct: 62 AAIAEE----PALIMPK-----ESANDSSFYQKVIQPWLKTGGQFAIAASVALMVITGVQ 112 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLG--------VPSEATANNGQQQQVQEQRR 171 + N ++ + P N +P G ASPVSL VP E T ++ EQ R Sbjct: 113 YSNTEAPITGL--EPALNVMPFAGIASPVSLSIESPDSRQVPPEFT-----DEEKVEQVR 165 Query: 172 RINAMLQDYELQRRL 186 RINA + D++LQ+R+ Sbjct: 166 RINAFVLDHQLQKRI 180 >UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella RepID=A3D1V1_SHEB5 Length = 208 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 12/194 (6%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + +E +SA +DGET D++ + EL+ + W +YH+I D+MRG+ P+ + D+S+ + Sbjct: 4 LGQEWVSAAVDGET-DAQTMAELSADTHSHDKWHNYHMIGDAMRGELPQNIVLDLSASIA 62 Query: 61 AAIEEEPVRQPATLIPE------AQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAV 114 AAIE EP A + P+ A P Q +V P Q Q +AA V++ Sbjct: 63 AAIELEP----AIVAPKHHASNVAAPVTPQIAANAQQNRVVPLFKQFGQYAIAATVAMFA 118 Query: 115 IVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRIN 174 IVGVQ+YN ++ + P +PV T P++G ASPVSL QV EQRRRIN Sbjct: 119 IVGVQNYNQSADDAASP-SPVLITRPLIGSASPVSLQTGPVQQNQGYTNDQVNEQRRRIN 177 Query: 175 AMLQDYELQRRLHS 188 +QD+ LQ+RL++ Sbjct: 178 TYIQDHMLQQRLNT 191 >UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Y9_HAMD5 Length = 201 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 114/195 (58%), Gaps = 20/195 (10%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSAL+D E LD ELL+ L+ + +QK+W++YHLI D++R D L D+S R++ Sbjct: 1 MQKEKLSALIDDEILDDELLHLLSKDKVLQKSWQNYHLIGDALRHDLANPLCLDMSDRIL 60 Query: 61 AAIEEEPVRQPATLIPEAQPA---PHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 I+ +P+ I + PA +PFWQK+RPW +QLTQ+ VAA VSL V++ Sbjct: 61 EVIKNDPI-----CINTSAPAIETSRDTDDIPFWQKIRPWVSQLTQIAVAASVSLVVVLS 115 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMG-KASPVSLGVPSEATANNGQQQQVQE-QRRRINA 175 G ++S Q E P FN PM+ K +PVS G+ S + G+ +++ NA Sbjct: 116 -----GHYQSSDQSELPTFNISPMIELKPAPVSFGLHSNVGTHAGKSHHMKKPSEEEQNA 170 Query: 176 -----MLQDYELQRR 185 +L +EL+RR Sbjct: 171 SEEFNLLHKFELKRR 185 >UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 Tax=Pasteurellaceae RepID=B8F4W3_HAEPS Length = 209 Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 15/207 (7%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KE LSA MDG + L ++ E+QKTW +YH IR MR + ++L D S+++ A Sbjct: 4 KETLSAYMDGHKESGDFAETLCNSAELQKTWANYHTIRSVMRSE-EQILGSDFSAKMAAL 62 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 +E E + + EAQ + + K++ WA L Q G+AA V L + GV N Sbjct: 63 LENEEIEA----VAEAQQSE---KPRGMLLKLKRWATPLMQAGIAASVCLVAVWGVNMMN 115 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYEL 182 E + Q E PV TLP VS P++ + + ++ Q+RRIN +LQ++EL Sbjct: 116 SSEEVA-QAEQPVLQTLPFSNSVQQVSYNAPAK---DQPTAEHLEYQQRRINVLLQNHEL 171 Query: 183 QRRLHSEQLQF---EQAQTQQAAVQVP 206 QRR + + E+ + Q +++QVP Sbjct: 172 QRRTSAGNVTLTEDEKQKAQNSSIQVP 198 >UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 Tax=Alteromonadales RepID=Q15R28_PSEA6 Length = 200 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 31/197 (15%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 E LSAL+DGE D +LL+ + ++ E+ W++YHLIRDS+R + ++ DI++ V AA+ Sbjct: 6 ENLSALVDGELHDEQLLDAIKNDAELADKWQNYHLIRDSLRKEMTAQINVDIAANVAAAL 65 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 EP A L P+ W+ +P V P+A Q QM +AA V++A+I+GVQ YN Sbjct: 66 ASEP----AILAPK-----KTWRDLPLVGSVVPFAKQGGQMAIAASVAVAMIIGVQQYN- 115 Query: 124 QSETSQQPETPVFNTLPMM----GKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 Q++ +QP FN+ P + G SPVSL E T + EQRR INA L D Sbjct: 116 QTDV-EQP----FNSAPALLGIQGGLSPVSL----EQT-RTLPRADASEQRRVINAYLND 165 Query: 180 YELQRRLHSEQLQFEQA 196 H +QL+F+ A Sbjct: 166 -------HKQQLRFKAA 175 >UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas RepID=A1SR25_PSYIN Length = 177 Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 21/184 (11%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGD-TPEVLHFDISSRVMAA 62 EQLSA++D E +D +L++EL N + Q+ + YHLI D MRGD T + ++FDIS +VMA Sbjct: 6 EQLSAIVDNEFIDEKLIDELLINKDKQELFSRYHLIGDVMRGDITDQFINFDISQQVMAK 65 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 I E+P + A + + + + F ++ +A + GV SL Sbjct: 66 I-EQPTKIAAVVELDTPTEKSKNNVISFVKRFGQYAIAASVAGVVVLASLVT-------- 116 Query: 123 GQSETSQQPETP---VFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 SE + Q + V T+P +G A+PVSL T QQ+V++ R+ A+L D Sbjct: 117 --SEPTFQNNSAGLEVLKTVP-LGAANPVSL-----QTTKKQSQQEVKKHNDRLEALLND 168 Query: 180 YELQ 183 ++LQ Sbjct: 169 HQLQ 172 >UniRef50_UPI0000E1152A sigma-E factor negative regulatory protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E1152A Length = 195 Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 29/197 (14%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 EQLSA +DGE + ++++ + ++Q+ W+ YHL+ D++RGD EVL D S ++ +I Sbjct: 6 EQLSAWVDGEA-STTRVDDVKADVQLQQKWQDYHLMGDTLRGD--EVLLTDKS--LLESI 60 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 + +P L P + + +P WQ V Q +Q VAA V+ +I+GVQ+YN Sbjct: 61 ADALDDEPTVLAPSTKS-----RVIPIWQNVVSLGKQSSQFAVAAGVAAVMILGVQNYNT 115 Query: 124 QSETSQQPETPVFNTLPM---MGKASPVSLG------VPSEATANNGQQQQVQEQRRRIN 174 ++ QP F T P G +PVSL P + ++Q + EQR+RIN Sbjct: 116 EAT---QP----FMTAPTSGPQGGLAPVSLSQSRTIQTPEQQL---NERQALLEQRKRIN 165 Query: 175 AMLQDYELQRRLHSEQL 191 A+L D++ Q RL + Q+ Sbjct: 166 ALLVDHQQQVRLQAAQI 182 >UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL7_PSEHT Length = 205 Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 14/200 (7%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEV-LHFDISSRV 59 + E LSAL+DGE + L + + T+ Y LI D+MR +H DIS RV Sbjct: 9 LDDESLSALLDGE----QQLADAKIAEQDVATFGRYALIGDAMRAQKDHSDIHIDISKRV 64 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+E EPV + +AQ AP W + Q+ +AA V++ IVGV Sbjct: 65 ALALESEPVYADFSQ-SKAQSAPQSDTINDNKVVAFNWRKPVAQLAIAASVAMFAIVGVN 123 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 Q + +QQ E P+ T P G ASPVS SE N + + Q++RI A++ + Sbjct: 124 ML-PQGDGAQQSEIPLLQTTPFTGTASPVSYS--SEPALKNAENGLRELQQQRIGALVLE 180 Query: 180 YELQRRL-HSEQLQFEQAQT 198 ++ Q R+ HS E AQT Sbjct: 181 HQRQARVAHS----LEAAQT 196 >UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJA0_CELJU Length = 231 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 28/182 (15%) Query: 4 EQLSALMDGETLDSELLNEL---AHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSALMD + + EL+ L + E++ TW Y L S+R D P + D +SRV Sbjct: 12 ESLSALMDNQASELELMRLLKAAGSDAELKSTWARYQLASASLRQDLPTLADMDFASRVS 71 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AA+ +EP A + +A A Q +P+WQ QL ++ VAA V+ AVI+GVQ Sbjct: 72 AALVDEPAHSSA--VNQAAAA----QSLPWWQ-------QLGRVAVAASVAGAVILGVQQ 118 Query: 121 YN-------GQSETSQQPETPVFNTLPMMGKASPVSLGVPS----EATANNGQQQQVQEQ 169 Y G + T+ P TPV NT + P + P+ +G + + QE Sbjct: 119 YQQTQLPEAGIAGTN-TPATPVVNTPAVNPPDLPSGINAPALSARTVAVQSGYENRPQES 177 Query: 170 RR 171 RR Sbjct: 178 RR 179 >UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ05_9GAMM Length = 251 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 22 ELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPA 81 E+ PE+ + W+ YHLIR MR D DISS+VMAA++ EP Q + Q + Sbjct: 2 EMDGEPELAEAWQRYHLIRSVMRNDEVAEPKLDISSQVMAALDAEPAFQVESETQSQQRS 61 Query: 82 PHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 + FW+ L M AA V+ VI+GVQ+ Sbjct: 62 DQDTSRFQFWKP-------LASMAAAASVTAMVILGVQN 93 >UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WN9_COLP3 Length = 233 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 43/230 (18%) Query: 1 MQKEQLSALMDG------ETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFD 54 ++ E +S+L+D +++ + L++ + + + TW++YHLI D +R + P+ L D Sbjct: 4 IKTESISSLVDNYSPSTDDSISAHLVDNMLKDEHLSSTWQNYHLIGDVLRDEVPQSLQLD 63 Query: 55 ISSRVMAAIEEEP-VRQPATLIPEAQPAPH----------------QWQKMP-----FWQ 92 +S + AAI +E + P + + + H Q + F Sbjct: 64 LSETISAAIAQEATILSPNSSMKTSGKNSHLATDENVSINNHSAAQQTNSVVDATNRFKA 123 Query: 93 KVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGV 152 K+ + Q+ +AA + +IVGVQ N ++ S + V T+P+ G A+PVS V Sbjct: 124 KISSLIKPMGQVAIAASAAALMIVGVQ--NNVTDNSIVTPSQVVQTVPLSGYANPVSFNV 181 Query: 153 ---------PSEATANNGQQQQVQEQR----RRINAMLQDYELQRRLHSE 189 S+ +Q+ R RR+ A+L+D+ Q +L S Sbjct: 182 QSSQTQQSQQSKQQTQQAMNEQLASDRIAQQRRLQALLKDHNQQVKLGSN 231 >UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS36_9GAMM Length = 222 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 24/122 (19%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + LSALMDGE D EL L E++ E++ W+ YH++ +++GD + D S+ + Sbjct: 10 QSLSALMDGEATDMELHRLLKEVSEGSELRDKWKRYHMVSSALKGDAA-ITPIDYSAAIS 68 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI+EE + + L + + +AA V+L ++GVQ Sbjct: 69 AAIDEESSHRQSVLA--------------------GFVGSAGRFAIAASVALVAVLGVQQ 108 Query: 121 YN 122 N Sbjct: 109 LN 110 >UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosococcus oceani RepID=Q3J8C8_NITOC Length = 195 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQLSALMDGE E+ L E+++ WE+YHL+RDS++G P +D++ RV Sbjct: 12 EQLSALMDGELPSEEIQSVLQAFKTQEEVRRRWENYHLVRDSLQGHLPGASRYDLARRVS 71 Query: 61 AAIEEEP 67 ++ EP Sbjct: 72 QILDNEP 78 >UniRef50_Q1QX28 Negative regulator of sigma E activity-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX28_CHRSD Length = 263 Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 19/124 (15%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E SALMD E D E+ L L +PE TW YHL R M+ D + D+S+ + Sbjct: 6 RESFSALMDNEGDDLEIRRALKALQGSPEEADTWRRYHLARSMMQRDRDVDVTTDLSAGI 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQK-MPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 MA + +EP P+ PAP ++ PF + VAA VSL VI GV Sbjct: 66 MARLADEPA-------PQEAPAPSTSRRAAPF--------SFAGSAAVAAAVSLMVITGV 110 Query: 119 QHYN 122 Q YN Sbjct: 111 QVYN 114 >UniRef50_A0YCK7 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK7_9GAMM Length = 225 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 3 KEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMR-GDTPEVLHFDISSRV 59 +E +SALMDGE + EL ++ ++ ++ TW YHL+R+ M+ DT H DISS+V Sbjct: 6 RESISALMDGEADELELRRIMSTDNDESVRSTWARYHLVREVMQDNDTGAYRHLDISSQV 65 Query: 60 MAAI-------EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 AI EE + Q +++ AQ QK W RP A VAA V++ Sbjct: 66 SMAIGHNNGRLSEEKIDQLESVV--AQKVSDDQQKTIVWW--RPMAG----FAVAASVAM 117 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVS 149 AVIVGVQ + + PV + PM + PV+ Sbjct: 118 AVIVGVQTLETNATSELASGFPVASKAPMTSRVYPVA 154 >UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG0_9GAMM Length = 189 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LSAL+DGET D E L++EL + E + WE YHLI DS+RG Sbjct: 7 KNERLSALVDGETDDFETRRLIDELVKSEEDRNQWERYHLIGDSLRGGLRNTAPAHFMDD 66 Query: 59 VMAAIEEEPVRQ 70 + A+ +EPV Q Sbjct: 67 IRTALADEPVLQ 78 >UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepID=Q5P0C8_AZOSE Length = 190 Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 34/184 (18%) Query: 1 MQKEQLSALMDGETLD----SELLNELAHNPEMQKTWESYHLIRDSMRGD---TPEVLHF 53 + K++LSAL+DG+ LD S + + + + ++ WE+Y LI D +RGD +P ++ Sbjct: 3 LMKDKLSALLDGD-LDEQAMSPVFDSIRRDRSLRSDWETYCLIGDVLRGDRNTSPGLV-- 59 Query: 54 DISSRVMAAIEEEP--VRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVS 111 +RVMA IE EP + PA+ A P Q + + + P AA + MGVA Sbjct: 60 ---ARVMAGIEAEPTVLAPPASGSASAPPGAAQPRA---GRSLMPLAASI--MGVA---- 107 Query: 112 LAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRR 171 +VG Y +E PE V G + + VP ATA + QV QR Sbjct: 108 ---VVGWVAYTLNAE----PEGDVRTASAASGLQAVEKVSVPGGATAPS---PQVDRQRE 157 Query: 172 RINA 175 + A Sbjct: 158 YLFA 161 >UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IG9_SACD2 Length = 224 Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSAL+DGE+ + +L L + A + E+++TW Y LI MR D DIS+ VM Sbjct: 11 ESLSALVDGESNELDLRRVLKQSAADDELRETWRRYQLIGAVMRNDKDVAPSIDISAGVM 70 Query: 61 AAIEEEPV 68 AAI +EP Sbjct: 71 AAIADEPA 78 >UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellaceae RepID=C5V4B7_9PROT Length = 167 Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 1 MQKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 M K ++SALMDGE + E +L ++ P Q W YH+I D +R PE +H DIS+ Sbjct: 1 MMKHEISALMDGELFEDEADSVLGQIKREPAAQSDWAVYHMIGDVLR--QPEYVHRDISA 58 Query: 58 RVMAAIEEEP 67 V ++ EP Sbjct: 59 IVRERLQNEP 68 >UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilaceae RepID=C6X6N8_METSD Length = 151 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 24/118 (20%) Query: 3 KEQLSALMDGETL--DSELLNELAHNPE-MQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 K+Q+SAL+D E DSE L + E + +W +YHLI D MRG +P + D++ R+ Sbjct: 2 KDQVSALVDEELSLEDSEYLYTAIRSSETLSDSWTTYHLIGDCMRG-SP-IFKADLTDRI 59 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 M +E+EPV L P+A+ A + K P T VAA V+ + VG Sbjct: 60 MQQLEQEPV----VLAPKAKKAVY---KTP------------TLWSVAASVAAVMFVG 98 >UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TNB4_RICCO Length = 162 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 3 KEQLSALMDGET-LDS--ELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHF--DISS 57 KEQLSALMDGE LD L L + E + W +YHLI D MRGD H + S Sbjct: 2 KEQLSALMDGEVDLDENPHLYTALCKSDEAETCWSTYHLIGDVMRGD----FHAQNGVYS 57 Query: 58 RVMAAIEEEPV 68 ++M +E EP Sbjct: 58 KIMKQLESEPT 68 >UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus influenzae RepID=A7LQ63_HAEIN Length = 61 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 34/51 (66%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVL 51 MQKEQLSA MDGE + ++L + L + E+Q +W S+H +R MR ++ L Sbjct: 1 MQKEQLSAYMDGEQVKTDLTDALLRDEELQASWHSFHTVRSVMRKESAVFL 51 >UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae RepID=Q2P4M6_XANOM Length = 299 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 10/82 (12%) Query: 3 KEQLSALMDGE-TLDSE--LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++QLSAL+DGE + D+ LL LAH+ E+ E + L D +RG D ++RV Sbjct: 18 RQQLSALVDGELSADASRFLLRRLAHDEELAGCHERWQLCGDVLRGAASAPAPLDFAARV 77 Query: 60 MAAIEEEPVRQPATLIPEAQPA 81 +AI EEP P AQPA Sbjct: 78 RSAIAEEPA-------PRAQPA 92 >UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas testosteroni RepID=D0J1H7_COMTE Length = 265 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 7/74 (9%) Query: 1 MQKEQLSALMDGE--TLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLH---FDI 55 +++EQLSAL+DGE ++ + + A + E Q++W YHLI D +R +PE+ H DI Sbjct: 9 IKQEQLSALVDGEASSVQMQAVLSYAESDEGQQSWAMYHLIGDVLR--SPELAHHSQHDI 66 Query: 56 SSRVMAAIEEEPVR 69 S V A +E EP+R Sbjct: 67 LSGVRAHMEREPIR 80 >UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU3_CHRVI Length = 183 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 22/130 (16%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +++LSAL DGE ++ LL+ LA + E+++ WE Y LI ++RG+ + ++ RV Sbjct: 6 RQRLSALQDGELAPAQVPALLDALAADTELRECWERYTLIGQAIRGEAIDPNARALADRV 65 Query: 60 MAAIEEEPVRQPATLI--PEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 A+ EP T++ P +PAP R W + T + +AA V L ++ Sbjct: 66 RNALAAEP-----TILCPPRQKPAP------------RRWTGRYTGLALAASVLLVTVLA 108 Query: 118 VQHYNGQSET 127 + G T Sbjct: 109 TPVFVGDPVT 118 >UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK3_THISH Length = 196 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LS L+D E E L++EL +PE W YHLI D++RG D +SR Sbjct: 5 KNERLSTLVDDEADSFEVRRLVDELGKHPEDLAQWGRYHLIGDAIRGGLNRSAPPDFASR 64 Query: 59 VMAAIEEEP 67 V A IE+EP Sbjct: 65 VSALIEQEP 73 >UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisrubri RepID=Q1N1C2_9GAMM Length = 192 Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 4 EQLSALMDGETLD---SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LS+LMDGE + LL ++ NPE++ W YHL +D ++G + E D+S V Sbjct: 7 ESLSSLMDGEADEMSVHRLLGKVDKNPELKAKWSRYHLAQDILKGQSSEHSELDVSGLVS 66 Query: 61 AAIEEE 66 +AI E Sbjct: 67 SAIAGE 72 >UniRef50_UPI0001699368 sigma-E factor negative regulatory protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699368 Length = 113 Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 18/120 (15%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 ++E++SAL+D E + E+ + L P Q+ W YHLI D+MR + ++ D++S Sbjct: 5 EREKVSALVDDELSEHEISRHIGRLLETPSEQQAWARYHLIGDAMRQELGSLVQPDLASA 64 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + A++E EP T+I AP ++ P W + +AA V+L + V Sbjct: 65 ISASLEREP-----TII-----APGMVKRRPA-----SWLKPVAGTAIAASVALVAVTMV 109 >UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX55_9GAMM Length = 199 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSALMD E + EL L ++ + E++ TW Y+ M G + DISSRV Sbjct: 6 RESLSALMDNEANELELQRLLKQVGSDAELRATWARYNAASAVMSGQDVSHMQLDISSRV 65 Query: 60 MAAIEEE 66 AAIE E Sbjct: 66 RAAIEVE 72 >UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z8_ALHEH Length = 243 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 19/117 (16%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSAL DGE EL L L +PE + Y+L RD ++ T E + ++ RV Sbjct: 10 SEQLSALADGELSREELPLLLARLDESPERRARLARYYLARDGLQRATGEGIDLGLADRV 69 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 A+ +EP +P+ + +P +RP A + +AA V+L ++ Sbjct: 70 RDALRDEPAHRPSR------------RPLPGSHYLRPAAG----LALAASVALVGVL 110 >UniRef50_Q2SL39 Sigma factor algU negative regulatory protein MucA n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL39_HAHCH Length = 210 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 3 KEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 KE +SAL+DGE + E+ LA H+ E+ TW Y +RD + + + H D+ + Sbjct: 6 KESMSALLDGEADELEVRRILAQSHDEEVMATWSRYQRVRDELHEEAAQWAHVDLRQGIW 65 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQK 93 +A+E+E + + E + AP + + W + Sbjct: 66 SALEKEEGVDRSESVVEGEVAPEEARVGGGWWR 98 >UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA49_KANKD Length = 232 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 11/118 (9%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + K+ +SA +D E + A E + W YHLI MR D + L DISSR+ Sbjct: 15 LDKQSVSACVDSELEAFATESSFAFESEEMQLWSRYHLIGQVMR-DEAQHLDMDISSRIN 73 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 I++EPV + P++ ++ PF QL +AA V+L V+ V Sbjct: 74 EQIDKEPVYTASPTKPKSNVI--RFPTNPF--------KQLAGYAIAASVALVVLFNV 121 >UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B0_9NEIS Length = 167 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 26/129 (20%) Query: 3 KEQLSALMDGETLD----SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE LSAL+D E LD S+L++ + + +++ W+ YHLI D+MR + ++ R Sbjct: 2 KESLSALVDNE-LDGPEASKLISAASTDESLKEAWDEYHLIGDAMRASG--LNSINVRHR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EEP T++ AP +W + VR A + +AA +S A +V Sbjct: 59 VAARLAEEP-----TVL-----APRRWLRQ---GSVRTVGA----VALAASMSFAAVVAW 101 Query: 119 QHY--NGQS 125 Q NGQ Sbjct: 102 QQLAVNGQG 110 >UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE2 Length = 154 Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 20/116 (17%) Query: 4 EQLSALMDGE----TLDSELLNELAHNPEMQKTWESYHLIRDSMRGD---TPEVLHFDIS 56 E++S+L D E +LD E+ + L+ +Q+ W+ Y ++RD ++ + +P D+S Sbjct: 3 EKISSLFDNEVEQESLDKEV-SALSAKSAVQRNWKYYQVVRDVLQNNYSSSP-----DLS 56 Query: 57 SRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 +R+M AI++EP + A P Q V PW +GV A + + Sbjct: 57 ARIMEAIDKEPTQMGAI-------RPKQNTASALVLPVMPWKIAAYTLGVFAAIGI 105 >UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6ME50_9PROT Length = 182 Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 7/69 (10%) Query: 3 KEQLSALMDGETLD----SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 K ++SALMDGE LD + ++ + + ++Q W SYHLI D++R + L +ISSR Sbjct: 2 KSKVSALMDGE-LDQQDVTHIIEAIRKDNDLQNEWRSYHLIGDTLRKSSR--LSMNISSR 58 Query: 59 VMAAIEEEP 67 V + EP Sbjct: 59 VSQKLITEP 67 >UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX95_METML Length = 163 Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 4 EQLSALMDGETL--DSE-LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQ+SALMD E D+E L+ + + + +TW YHLI D+MRGD L ++M Sbjct: 3 EQISALMDDEIAVEDAEHLIASIHTSRQASQTWHQYHLIGDAMRGDV--ALGASFKQKLM 60 Query: 61 AAIEEEP 67 IE+EP Sbjct: 61 QRIEQEP 67 >UniRef50_P38107 Sigma factor algU negative regulatory protein n=32 Tax=Pseudomonadaceae RepID=MUCA_PSEAE Length = 194 Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 25/123 (20%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSA+MD E + EL LA + E++ TW Y L R M + P + DI++ V Sbjct: 7 QETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHRE-PTLPKLDIAAAV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AA+ +E AP + +K P W+ V ++ VAA V+LAV+ GV+ Sbjct: 66 SAALADEA-------------APPKAEKGP-WRMV-------GRLAVAASVTLAVLAGVR 104 Query: 120 HYN 122 YN Sbjct: 105 LYN 107 >UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRY9_9GAMM Length = 213 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQLSAL+DGE E LL +L + E++ + Y LI D+++ + D+ +RV Sbjct: 7 EQLSALVDGELRKGETDLLLRQLGRSAELKARFARYCLISDALQRNLSVATGSDLPTRVA 66 Query: 61 AAIEEEP 67 A+E+EP Sbjct: 67 RALEDEP 73 >UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH42_THIDA Length = 185 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 20/110 (18%) Query: 6 LSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 LSAL+DGE+ +E L + + +++TW YHLI D MRG P F MA Sbjct: 23 LSALLDGESGRTESGAFLAAMRQDERLRRTWSEYHLIGDLMRGVGPAPEGF------MAR 76 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 E +P L P+ H W + R A L + V VSL Sbjct: 77 FSERLAAEPTVLAPQR----HIWPQ-------RVVVASLASLAVWGAVSL 115 >UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BNK0_DELAS Length = 238 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 2 QKEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRGDTPEVLH---FDIS 56 ++EQLSAL DGE +EL LA+ + Q+ W YHL+ D +R +PE+ H D+ Sbjct: 7 KREQLSALADGELSAAELQAVLAYAESDAGQQEWRMYHLVGDVLR--SPELAHHSRHDVL 64 Query: 57 SRVMAAIEEEPVR 69 S + A + EP R Sbjct: 65 SGIRAQLANEPRR 77 >UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA n=2 Tax=Nitrosomonas RepID=Q0AF64_NITEC Length = 191 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++++S LMDGE D++ ++N + + + WE YH+IRDS+ V+ D+S ++ Sbjct: 2 RKKVSELMDGELEDTDAVTIINVVKSDSSLFSDWEVYHIIRDSLHQ---SVISIDLSEKI 58 Query: 60 MAAIEEEPV 68 + +EP+ Sbjct: 59 RNKLIDEPL 67 >UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKU0_RICCO Length = 151 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 11/78 (14%) Query: 5 QLSALMDGETLDSELLNEL----AHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 QLSAL+DGE +D E + E+ + W YH+IRD +R + + D++SR+M Sbjct: 1 QLSALVDGE-VDVERCEHIFLAAKSTGEVAQAWRDYHVIRDVLREEC--WVESDMTSRIM 57 Query: 61 AAIEEEPVRQPATLIPEA 78 A +++E P L+P+A Sbjct: 58 AQLDDE----PTMLVPQA 71 >UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae specific n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y877_NITMU Length = 188 Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 7/69 (10%) Query: 3 KEQLSALMDGETLD----SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 +E++SALMDGE LD S ++ + + E+++ W +YHLI D++ G + EV DI+ R Sbjct: 2 QEKISALMDGE-LDAGDASAMIEQFKNAEELREYWIAYHLISDAL-GQS-EVKPLDITRR 58 Query: 59 VMAAIEEEP 67 V A + EP Sbjct: 59 VNARLVAEP 67 >UniRef50_A0Z441 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z441_9GAMM Length = 201 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 44/154 (28%) Query: 3 KEQLSALMDGET--LD-SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 KE +SAL+DGE LD + +L + +PE + W+ R +R E D+S V Sbjct: 8 KESMSALIDGEGSELDIARVLKAVDEDPEARAHWQRIQQTRGLLRTGQIE-RQIDVSQAV 66 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 ++E +P R+P L P L + VAA V+ A+++G Q Sbjct: 67 RQSLESQPRRRP--LGP------------------------LGSLAVAASVTFAMVLGGQ 100 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVP 153 GQS P+ ASP++ VP Sbjct: 101 AMVGQS--------------PLGSAASPIATAVP 120 >UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R101_IDILO Length = 195 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 33/203 (16%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 + E SAL D + ++++ + L + + Q+ W Y +I +++GD + DIS RV Sbjct: 5 KSESTSALFDEQLINADEIEALLQDEQAQQEWHRYSVIHAAIKGDLNSDISLDISERVRV 64 Query: 62 AIEEEP-VRQPATLIPEAQ-PAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 ++ +E V +P ++Q A +W +P+A VA + V Sbjct: 65 SVSQESNVVKPGFGRSKSQNKAASRW--------FQPFAKVAVAASVAVVAVMTV----- 111 Query: 120 HYNGQSETSQQPET-------PVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 +T QQP T P T P+ G PVSL + + QQ +RR+ Sbjct: 112 ------QTYQQPATPDGSSAEPTLLTSPIGGGREPVSLNRVEPMSQISDQQ-----RRRQ 160 Query: 173 INAMLQDYELQRRLHSEQLQFEQ 195 + + L D++ Q L + Q E+ Sbjct: 161 VQSYLIDHQQQLMLQQKTEQAEK 183 >UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadaceae RepID=A1TLE4_ACIAC Length = 207 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 11/83 (13%) Query: 3 KEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRGDTPEVL---HFDISS 57 +EQLSAL DG ++E A+ E Q+ W YHLI D +R +PE+ + ++ Sbjct: 8 REQLSALADGGISEAEWGEAFAYARTAEGQEAWAVYHLIGDVLR--SPELARPGNAALAD 65 Query: 58 RVMA--AIEEEPVRQPATLIPEA 78 RVMA A EE P + A +PEA Sbjct: 66 RVMAQLAREERPAAEVA--LPEA 86 >UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NWD1_CHRVO Length = 160 Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 17/89 (19%) Query: 3 KEQLSALMDGETLDS----ELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE +SALMDGE LD + + +A + ++ WE YHLI D+MR + + ++ ++ Sbjct: 2 KETISALMDGE-LDGPDADKAIAAIAGDKDLDDAWEQYHLIGDAMRAN--RLSSLNVRAK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQK 87 V A + EEP T++ AP +W + Sbjct: 59 VAARLAEEP-----TVL-----APRRWTR 77 >UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRM9_TERTT Length = 247 Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 20/125 (16%) Query: 4 EQLSALMD--GETLD-SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E +SAL+D G LD + +L + + W+ YH I +MR + D+S+ + Sbjct: 18 ESISALVDNQGNELDLARVLKASDSDVHARSQWQRYHQISATMRSEDTSFAAIDLSAGIR 77 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI E TL + Q A R W L + +AA V++ +VGVQ Sbjct: 78 AAIASEQ-----TLAGQPQVATS-----------RSWLHLLGKTSIAATVAVGFLVGVQQ 121 Query: 121 YNGQS 125 GQS Sbjct: 122 L-GQS 125 >UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V2_9GAMM Length = 203 Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDT--PEVLHFDISSR 58 E LSAL D E + EL L +L +PE++ W H+ R ++ G+T P V D + Sbjct: 15 ETLSALADDEAQELELRRVLRDLDGSPELRARWYRLHVARTALSGETVRPSV---DFAGS 71 Query: 59 VMAAIEEEP 67 V AAI+ EP Sbjct: 72 VRAAIDAEP 80 >UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisseria RepID=C0EK24_NEIFL Length = 186 Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR 44 E +SALMDGE L E+ + + + E + W YH+I D +R Sbjct: 14 EYVSALMDGEALTDEMPDAVLADEEALRAWHEYHIIGDCIR 54 >UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putative n=1 Tax=Limnobacter sp. MED105 RepID=A6GP46_9BURK Length = 216 Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 QKEQLSALMDGETLDSELLNEL-AHNPEMQKTWESYHLIRDSMRGDTPEVLHF---DISS 57 + EQ+SA++DGE ++EL L A E +TW+ Y + D +R + E++ F D+ Sbjct: 3 RNEQISAMLDGELDEAELKLLLGAMGAEEAQTWQGYCAVGDLIR--SSEMIAFHSPDLVG 60 Query: 58 RVMAAIEEEP 67 R+ A++E EP Sbjct: 61 RISASLENEP 70 >UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiaceae RepID=Q1LKM5_RALME Length = 218 Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 4 EQLSALMDGETL--DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 EQ+SALMDGE D + LA + W Y LI D+MR + E+ H + ++ Sbjct: 16 EQISALMDGELAPHDVDAALGLAKDDAGMADWSMYQLIGDAMRSE--ELTHAGSTEAFLS 73 Query: 62 AIEEEPVRQPATLIPE-AQPAPHQWQKMPFWQK 93 + +P L+P AQ H+ P W + Sbjct: 74 RFSAQLEAEPHVLVPAVAQAGRHRLLVRPSWVR 106 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130... 283 2e-75 UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 ... 256 5e-67 UniRef50_P44791 Sigma-E factor negative regulatory protein homol... 211 1e-53 UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 T... 205 8e-52 UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein Rs... 203 4e-51 UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein Rs... 199 7e-50 UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA ... 196 4e-49 UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoni... 189 7e-47 UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 T... 185 1e-45 UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella R... 176 6e-43 UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=M... 175 9e-43 UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 ... 171 2e-41 UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment... 168 2e-40 UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=A... 166 5e-40 UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulat... 147 2e-34 UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negativ... 144 2e-33 UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 T... 143 3e-33 UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas ... 141 2e-32 UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA ... 121 2e-26 UniRef50_UPI0000E1152A sigma-E factor negative regulatory protei... 119 8e-26 UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepI... 102 9e-21 UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=... 100 4e-20 UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatiu... 99 8e-20 UniRef50_A0YCK7 Sigma factor algU negative regulatory protein Mu... 98 2e-19 UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma p... 96 7e-19 UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB ... 94 4e-18 UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 94 4e-18 UniRef50_UPI0001699368 sigma-E factor negative regulatory protei... 93 9e-18 UniRef50_Q1QX28 Negative regulator of sigma E activity-like prot... 92 1e-17 UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella kor... 91 2e-17 UniRef50_Q2SL39 Sigma factor algU negative regulatory protein Mu... 90 5e-17 UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnico... 88 2e-16 UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococc... 87 4e-16 UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=S... 83 7e-15 UniRef50_P38107 Sigma factor algU negative regulatory protein n=... 82 8e-15 UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitr... 82 1e-14 UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera... 82 1e-14 UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisr... 81 2e-14 UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 81 4e-14 UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1... 81 4e-14 UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosoco... 80 4e-14 UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophila... 79 1e-13 UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acido... 78 2e-13 UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilac... 78 2e-13 UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae Rep... 77 3e-13 UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellace... 77 4e-13 UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas ... 76 6e-13 UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus... 76 1e-12 UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobac... 75 2e-12 UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax... 73 5e-12 UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas tes... 71 3e-11 Sequences not found previously or not previously below threshold: UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=I... 81 3e-14 UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 ... 77 4e-13 UniRef50_D2U9S3 Putative regulatory protein n=1 Tax=Xanthomonas ... 76 7e-13 UniRef50_A1WT22 Anti sigma-E protein, RseA n=1 Tax=Halorhodospir... 76 9e-13 UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadacea... 74 3e-12 UniRef50_Q21XN7 Anti sigma-E protein, RseA, Burkholderiaceae spe... 73 5e-12 UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 ... 68 2e-10 UniRef50_A2SDG6 Putative transmembrane sigma-E factor negative r... 67 4e-10 UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromob... 67 5e-10 UniRef50_A3WPR2 Negative regulator of sigma E activity n=1 Tax=I... 67 6e-10 UniRef50_A1U2X1 Anti sigma-E protein, RseA n=3 Tax=Marinobacter ... 66 7e-10 UniRef50_B1XZN3 Anti sigma-E protein, RseA n=1 Tax=Leptothrix ch... 66 1e-09 UniRef50_C0N4S2 Anti sigma-E protein RseA, N-terminal domain n=1... 66 1e-09 UniRef50_A0Z441 Sigma factor algU negative regulatory protein Mu... 65 1e-09 UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae spe... 64 3e-09 UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax... 62 1e-08 UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putat... 62 1e-08 UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiac... 61 3e-08 UniRef50_A3Y8F1 RNA polymerase sigma-70 factor n=1 Tax=Marinomon... 61 3e-08 UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA ... 61 3e-08 UniRef50_A1VRT8 Anti sigma-E protein, RseA n=2 Tax=Polaromonas R... 60 6e-08 UniRef50_A6SXQ6 Anti sigma-E protein n=3 Tax=cellular organisms ... 60 6e-08 UniRef50_C5CSE9 Anti sigma-E protein, RseA n=4 Tax=Comamonadacea... 59 1e-07 UniRef50_B5JX07 Anti sigma-E protein RseA, N-terminal domain n=1... 56 6e-07 UniRef50_B2I5Z9 Anti sigma-E protein, RseA n=7 Tax=Xylella fasti... 56 7e-07 UniRef50_Q0VP12 Sigma factor algU negative regulatory protein Al... 56 9e-07 UniRef50_B6BUK1 Putative uncharacterized protein n=1 Tax=beta pr... 55 2e-06 UniRef50_Q2KW15 Sigma-E factor negative regulatory protein n=5 T... 55 2e-06 UniRef50_UPI00016A9B00 sigma factor algU regulatory protein MucA... 54 5e-06 UniRef50_C7HX16 Anti sigma-E protein, RseA n=1 Tax=Thiomonas int... 53 5e-06 UniRef50_Q6J0U5 MucA n=2 Tax=Pseudomonas aeruginosa RepID=Q6J0U5... 53 6e-06 UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisser... 52 1e-05 UniRef50_B2JFJ6 Anti sigma-E protein, RseA n=58 Tax=Burkholderia... 51 4e-05 UniRef50_Q608M0 Conserved domain protein n=1 Tax=Methylococcus c... 51 4e-05 UniRef50_B8KFU9 Anti-sigma factor MucA n=1 Tax=gamma proteobacte... 49 8e-05 UniRef50_C6M5L2 Putative anti sigma-E protein RseA n=2 Tax=Neiss... 48 2e-04 UniRef50_C9Y9K3 Putative uncharacterized protein n=1 Tax=Curviba... 48 2e-04 UniRef50_A4GHT7 Putative uncharacterized protein n=1 Tax=uncultu... 47 3e-04 UniRef50_A6VUA1 Putative uncharacterized protein n=1 Tax=Marinom... 44 0.003 UniRef50_B8KRG1 Anti-sigma factor MucA, putative n=1 Tax=gamma p... 43 0.007 UniRef50_Q4PK19 Putative uncharacterized protein n=1 Tax=uncultu... 42 0.010 UniRef50_A6EYD0 Putative uncharacterized protein n=1 Tax=Marinob... 40 0.074 >UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130 Tax=Enterobacteriaceae RepID=RSEA_ECOL6 Length = 216 Score = 283 bits (725), Expect = 2e-75, Method: Composition-based stats. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM Sbjct: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH Sbjct: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY Sbjct: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 Query: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ Sbjct: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 >UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 Tax=Enterobacteriaceae RepID=A1JKJ7_YERE8 Length = 218 Score = 256 bits (653), Expect = 5e-67, Method: Composition-based stats. Identities = 138/218 (63%), Positives = 168/218 (77%), Gaps = 2/218 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSALMDGETLDSEL+ L+ + +Q++W+SYHLIRD++RGD EVLH DI+SRV Sbjct: 1 MQKEKLSALMDGETLDSELIGSLSKDKALQQSWQSYHLIRDTLRGDVGEVLHLDIASRVA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++ EP R +PE+QP PH WQKMPFWQKVRPWA+Q+TQ+GVAACVSLAVIVGVQ Sbjct: 61 EALKNEPARFVPIAVPESQPQPHVWQKMPFWQKVRPWASQITQVGVAACVSLAVIVGVQQ 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAM--LQ 178 YN + + QPE P FNTLPMMGKASPVS GVP++ + QQ QVQEQRRR+N M LQ Sbjct: 121 YNQPASGNLQPEAPAFNTLPMMGKASPVSFGVPADGSFGTSQQHQVQEQRRRVNMMTQLQ 180 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 D+ELQRRL + + + QAA+QVPG Q+LG Q Q Sbjct: 181 DFELQRRLPQTDVSQVPSASTQAAIQVPGTQSLGMQQQ 218 >UniRef50_P44791 Sigma-E factor negative regulatory protein homolog n=16 Tax=Haemophilus influenzae RepID=RSEA_HAEIN Length = 195 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 4/199 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSA MDGE ++++L++ L + E+Q +W S+H +R MR ++ L D ++++ Sbjct: 1 MQKEQLSAYMDGEQVETDLIDALLRDEELQASWHSFHTVRSVMRKESAVFLGADFTAKMA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 IE E V++ +I +QP P F QK++ + A +TQ+ VAA V L ++GVQ Sbjct: 61 DLIELEDVKKV-DVIAVSQPEPEDAHNSVFMQKLKAFFAPMTQVAVAAGVCLVAVLGVQS 119 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 +N +++ S PETPV TLP VS PS+ T + Q++++ RRI AMLQ+Y Sbjct: 120 FNNKNDASNLPETPVLQTLPFNNAVQEVSYNAPSKDTLTS---DQLEKKSRRIGAMLQNY 176 Query: 181 ELQRRLHSEQLQFEQAQTQ 199 ELQRR+HS+ L +Q + Sbjct: 177 ELQRRMHSDALDVSSSQVR 195 >UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 Tax=Pasteurellaceae RepID=Q0I576_HAES1 Length = 233 Score = 205 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 108/193 (55%), Gaps = 4/193 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE LSA +DGE ++ + L N ++Q +W +YHLIR +R ++ +L D ++R+ Sbjct: 40 MQKELLSAYIDGEHCGNKFTDTLCQNKDLQNSWSNYHLIRSIIRKESKVLLGSDFTARMG 99 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I++E Q + E+QP + +K+PF QK+R + + QM VAA V ++GVQ Sbjct: 100 TLIKQEEKIQIEHSL-ESQPTLAEVEKLPFIQKIRSSFSPMLQMAVAATVCFVAVLGVQS 158 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 +N + +TP TLP +S +P + Q+QV+++ +RI MLQ+Y Sbjct: 159 FNHERAGKNTLDTPTLQTLPFNNSVQEISYNIPRKEII---TQEQVEQRNKRIGIMLQNY 215 Query: 181 ELQRRLHSEQLQF 193 ELQRRLH+ Sbjct: 216 ELQRRLHTNSFGL 228 >UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein RseA n=9 Tax=Vibrionaceae RepID=D0YVX7_LISDA Length = 216 Score = 203 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 90/212 (42%), Positives = 124/212 (58%), Gaps = 19/212 (8%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE++SAL+DGE LD ++N L + E + +W Y+LI D MRGD P+ +DI++ V Sbjct: 3 DKEKISALLDGEDLDQSIINALTVDKESELSWHDYNLIGDVMRGDAPQCKEWDIAANVAL 62 Query: 62 AIEEEPVRQPATL----------IPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVS 111 A++ EP +T I E+QP P Q ++ + W Q Q+ VAACVS Sbjct: 63 ALDAEPAHSVSTAEVVDIQVAKDIVESQPTPQQAKRF-----LPAWLTQFGQVAVAACVS 117 Query: 112 LAVIVGVQHYNG-QSETSQQPET-PVFNTLPMMGKASPVSLGVPSEATANN--GQQQQVQ 167 LAVIVGVQ YNG S + PET PV T+P GKA PVS S +++ + Q+ Sbjct: 118 LAVIVGVQQYNGSDSNATNAPETMPVLQTIPFAGKAEPVSFTRDSLRNSHSSAPSEAQLM 177 Query: 168 EQRRRINAMLQDYELQRRLHSEQLQFEQAQTQ 199 EQRRRINAMLQDYELQ R ++E ++ + + Sbjct: 178 EQRRRINAMLQDYELQLRFNAEDGSIDKTKLE 209 >UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein RseA n=2 Tax=Vibrionaceae RepID=C9PL53_VIBFU Length = 213 Score = 199 bits (505), Expect = 7e-50, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 121/210 (57%), Gaps = 19/210 (9%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE+LSALMDGE +D L+ ELA + + TW++YHLI D +RG+ PE ++I+ V Sbjct: 7 DKEKLSALMDGELVDKLLIQELASDRDGLDTWKNYHLIGDVLRGEAPERPEWNIAESVAL 66 Query: 62 AIEEEPVRQPATLIP-----------EAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACV 110 A+E EP + E+QP P Q ++ ++ W +Q Q+ VAACV Sbjct: 67 ALENEPAHSTFSTATPHITDINQARIESQPKPEQARR-----QLPAWLSQFGQVAVAACV 121 Query: 111 SLAVIVGVQHYNG-QSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQ 169 SLAVI+GVQ Y G T QQ + PV T+P G A PVSL E+ + + VQEQ Sbjct: 122 SLAVILGVQQYGGTDGATPQQDQLPVLQTIPFSGSAEPVSLT--RESVERHSNEANVQEQ 179 Query: 170 RRRINAMLQDYELQRRLHSEQLQFEQAQTQ 199 RRR+NA+LQDYELQ RL+SE L + Sbjct: 180 RRRVNALLQDYELQLRLNSENLGSHSDPVE 209 >UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA n=47 Tax=Vibrionales RepID=A5F5G6_VIBC3 Length = 212 Score = 196 bits (498), Expect = 4e-49, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 8/204 (3%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE+LSALMDGE +D+EL+ LA + + + TW++YHLI D +RG+ P ++I+ V Sbjct: 9 DKEKLSALMDGEMIDNELILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWNIAESVAL 68 Query: 62 AIEEEPVRQP-----ATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 A+E EP P + + Q + +++ W +Q Q+G+AACVSLAVI Sbjct: 69 ALENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKRQLPAWLSQFGQVGIAACVSLAVIF 128 Query: 117 GVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAM 176 GVQ Y GQS + + E PV T+P+ G A PVSL S + +QEQRRR+NA+ Sbjct: 129 GVQQYGGQS-SGVENELPVLQTIPLAGSAEPVSLTRDS--VEKHAPDSSMQEQRRRVNAL 185 Query: 177 LQDYELQRRLHSEQLQFEQAQTQQ 200 LQDYELQ RL+SE Q + Sbjct: 186 LQDYELQLRLNSENSASHQHPVES 209 >UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoniae RepID=D2TX84_9ENTR Length = 208 Score = 189 bits (479), Expect = 7e-47, Method: Composition-based stats. Identities = 99/199 (49%), Positives = 139/199 (69%), Gaps = 1/199 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 M +E+LSALMDGE DSEL++ + + +QK WESYHLIRDS+RGD EV+H DI+ +V Sbjct: 1 MHRERLSALMDGEIFDSELIHTILQDVSLQKRWESYHLIRDSLRGDINEVIHLDITGKVE 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A+ EP++ IPE+QP P W+ MPFW+K+RPWA Q+TQ+GVAA V++AVI GVQ+ Sbjct: 61 QALASEPIQIAPDAIPESQPEPATWRLMPFWRKLRPWANQITQVGVAASVAVAVIAGVQN 120 Query: 121 YNGQS-ETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 YN + ET + ++P+FNT+P+MG ASPVSL V ++ Q +Q++++ RR+ MLQ Sbjct: 121 YNTSNIETDGKSDSPIFNTVPIMGAASPVSLNVSNDQLFAQPQTEQLEQRNRRLGLMLQQ 180 Query: 180 YELQRRLHSEQLQFEQAQT 198 YEL+RR Q + Sbjct: 181 YELERRSTLNQSVTSSSAI 199 >UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKN4_ALISL Length = 205 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 6/203 (2%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 K ++SA +D E +D+ + L+ +TW +YHLI D MRGD P ++I++ V Sbjct: 3 DKAKISAFIDNEEMDNAFIASLSETSN-AETWANYHLIGDVMRGDAPSSKEWNIAANVAL 61 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 A+E+E Q + P Q + + W Q +Q+ +AAC SL VIVGVQ Y Sbjct: 62 ALEDEAAHQMNDNV--TAFIPSQPTPSEAKKTMPSWLTQFSQVAMAACFSLVVIVGVQQY 119 Query: 122 NGQSETS--QQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 N + V +T+P G A PVSL S + + V EQR+RINAMLQD Sbjct: 120 NNDDPNGIPTSGDIQVLDTIPFSGSAEPVSLTRDS-LVPKSSNEADVMEQRKRINAMLQD 178 Query: 180 YELQRRLHSEQLQFEQAQTQQAA 202 YELQ RL++ ++ +Q + Sbjct: 179 YELQLRLNAHDGSVDRELLEQNS 201 >UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella RepID=A3D1V1_SHEB5 Length = 208 Score = 176 bits (445), Expect = 6e-43, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 4/200 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + +E +SA +DGET D++ + EL+ + W +YH+I D+MRG+ P+ + D+S+ + Sbjct: 4 LGQEWVSAAVDGET-DAQTMAELSADTHSHDKWHNYHMIGDAMRGELPQNIVLDLSASIA 62 Query: 61 AAIEEEPVRQPAT--LIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 AAIE EP A P Q +V P Q Q +AA V++ IVGV Sbjct: 63 AAIELEPAIVAPKHHASNVAAPVTPQIAANAQQNRVVPLFKQFGQYAIAATVAMFAIVGV 122 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 Q+YN ++ + P +PV T P++G ASPVSL QV EQRRRIN +Q Sbjct: 123 QNYNQSADDAASP-SPVLITRPLIGSASPVSLQTGPVQQNQGYTNDQVNEQRRRINTYIQ 181 Query: 179 DYELQRRLHSEQLQFEQAQT 198 D+ LQ+RL++ + + + Sbjct: 182 DHMLQQRLNTGAVVEDNTEV 201 >UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=Moritella sp. PE36 RepID=A6FDN6_9GAMM Length = 182 Score = 175 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 15/192 (7%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 ++KE+LS+++D E +D+ LL+EL + + +W+ YH+I D MRG+TP ++ D++ + Sbjct: 2 IEKERLSSIVDNEYIDAALLDELGKDEALASSWQHYHMIGDVMRGETPATVNLDLTRAIT 61 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKV-RPWAAQLTQMGVAACVSLAVIVGVQ 119 AAI EEP F+QKV +PW Q +AA V+L VI GVQ Sbjct: 62 AAIAEEPALIMP---------KESANDSSFYQKVIQPWLKTGGQFAIAASVALMVITGVQ 112 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGV---PSEATANNGQQQQVQEQRRRINAM 176 + N ++ + P N +P G ASPVSL + S ++ EQ RRINA Sbjct: 113 YSNTEAPITGL--EPALNVMPFAGIASPVSLSIESPDSRQVPPEFTDEEKVEQVRRINAF 170 Query: 177 LQDYELQRRLHS 188 + D++LQ+R+ Sbjct: 171 VLDHQLQKRIQQ 182 >UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 Tax=Pasteurellaceae RepID=B8F4W3_HAEPS Length = 209 Score = 171 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 15/208 (7%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE LSA MDG + L ++ E+QKTW +YH IR MR + ++L D S+++ A Sbjct: 3 HKETLSAYMDGHKESGDFAETLCNSAELQKTWANYHTIRSVMRSEE-QILGSDFSAKMAA 61 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 +E E + A +P K++ WA L Q G+AA V L + GV Sbjct: 62 LLENEEIEAVAEAQQSEKP-------RGMLLKLKRWATPLMQAGIAASVCLVAVWGVNMM 114 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 N E + Q E PV TLP VS P++ + + ++ Q+RRIN +LQ++E Sbjct: 115 NSSEEVA-QAEQPVLQTLPFSNSVQQVSYNAPAK---DQPTAEHLEYQQRRINVLLQNHE 170 Query: 182 LQRRLHSEQLQF---EQAQTQQAAVQVP 206 LQRR + + E+ + Q +++QVP Sbjct: 171 LQRRTSAGNVTLTEDEKQKAQNSSIQVP 198 >UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment) n=1 Tax=Vibrio shilonii AK1 RepID=A6D8F8_9VIBR Length = 167 Score = 168 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 8/170 (4%) Query: 33 WESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIP-EAQPAPHQWQKMPFW 91 W +YHLI D MRGD P+ L ++I+ V +A+E EP ++P E+QP P Q +++ Sbjct: 1 WHNYHLIGDVMRGDEPQSLDWNIAESVASALENEPAHTSDIVMPIESQPTPSQAKRL--- 57 Query: 92 QKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPET-PVFNTLPMMGKASPVSL 150 + W Q Q+ VAACVSLAVI+GVQ Y+GQ + E PV T+P G A PVSL Sbjct: 58 --LPAWITQFGQVAVAACVSLAVILGVQQYSGQDPAQPEAEQLPVLQTIPFAGSAEPVSL 115 Query: 151 GVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQ 200 S ++ + VQEQRRRINA+LQDYELQ RL+SE A T+ Sbjct: 116 TRDS-VAKSSNESVNVQEQRRRINALLQDYELQLRLNSEDNASHSADTES 164 >UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=Aeromonadaceae RepID=A4SRD7_AERS4 Length = 197 Score = 166 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 109/189 (57%), Gaps = 8/189 (4%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KEQLSALMDG+ D E+L EL +P +Q TW YHLI D+MRGD P L D+S +MAA Sbjct: 4 KEQLSALMDGDLSDVEVLGELGMDPALQDTWSRYHLIGDAMRGDLPVNLQLDLSDSIMAA 63 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 +E+EP + AP R Q+ Q +AA V+ AVI GVQ Y Sbjct: 64 LEDEPTILAPKPVESKPTAPQVHTAAKVVPLFRRVGQQVGQYAIAASVAAAVIFGVQQYQ 123 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQ-----QQVQEQRRRINAML 177 GQ P PV NT+P+ G +SPVS+ P + + +Q QQ+QEQR RINA L Sbjct: 124 GQDGI---PTNPVLNTIPVGGSSSPVSVHYPQDGNRASTRQQGLSEQQMQEQRERINAFL 180 Query: 178 QDYELQRRL 186 +D++LQ+RL Sbjct: 181 RDHQLQQRL 189 >UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Y9_HAMD5 Length = 201 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 14/194 (7%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSAL+D E LD ELL+ L+ + +QK+W++YHLI D++R D L D+S R++ Sbjct: 1 MQKEKLSALIDDEILDDELLHLLSKDKVLQKSWQNYHLIGDALRHDLANPLCLDMSDRIL 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I+ +P+ + A +PFWQK+RPW +QLTQ+ A + V Sbjct: 61 EVIKNDPICINTS--APAIETSRDTDDIPFWQKIRPWVSQLTQI-----AVAASVSLVVV 113 Query: 121 YNGQSETSQQPETPVFNTLPMMG-KASPVSLGVPSEATANNGQQQQVQE-QRRRINA--- 175 +G ++S Q E P FN PM+ K +PVS G+ S + G+ +++ NA Sbjct: 114 LSGHYQSSDQSELPTFNISPMIELKPAPVSFGLHSNVGTHAGKSHHMKKPSEEEQNASEE 173 Query: 176 --MLQDYELQRRLH 187 +L +EL+RR Sbjct: 174 FNLLHKFELKRRTS 187 >UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL7_PSEHT Length = 205 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 95/199 (47%), Gaps = 12/199 (6%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEV-LHFDISSRV 59 + E LSAL+DGE + L + + T+ Y LI D+MR +H DIS RV Sbjct: 9 LDDESLSALLDGE----QQLADAKIAEQDVATFGRYALIGDAMRAQKDHSDIHIDISKRV 64 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+E EPV + +AQ AP W + Q+ +AA V++ IVGV Sbjct: 65 ALALESEPVYADFSQS-KAQSAPQSDTINDNKVVAFNWRKPVAQLAIAASVAMFAIVGVN 123 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 Q + +QQ E P+ T P G ASPVS SE N + + Q++RI A++ + Sbjct: 124 ML-PQGDGAQQSEIPLLQTTPFTGTASPVSYS--SEPALKNAENGLRELQQQRIGALVLE 180 Query: 180 YELQRRLHSEQLQFEQAQT 198 ++ Q R+ E AQT Sbjct: 181 HQRQARV---AHSLEAAQT 196 >UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 Tax=Alteromonadales RepID=Q15R28_PSEA6 Length = 200 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 16/192 (8%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 E LSAL+DGE D +LL+ + ++ E+ W++YHLIRDS+R + ++ DI++ V AA+ Sbjct: 6 ENLSALVDGELHDEQLLDAIKNDAELADKWQNYHLIRDSLRKEMTAQINVDIAANVAAAL 65 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 EP L P+ W+ +P V P+A Q QM +AA V++A+I+GVQ YN Sbjct: 66 ASEPA----ILAPK-----KTWRDLPLVGSVVPFAKQGGQMAIAASVAVAMIIGVQQYNQ 116 Query: 124 QSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQ 183 P L + G SPVSL + EQRR INA L D++ Q Sbjct: 117 TDVEQPFNSAPAL--LGIQGGLSPVSL-----EQTRTLPRADASEQRRVINAYLNDHKQQ 169 Query: 184 RRLHSEQLQFEQ 195 R + + E Sbjct: 170 LRFKAAPAEGES 181 >UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas RepID=A1SR25_PSYIN Length = 177 Score = 141 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 15/186 (8%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGD-TPEVLHFDISSRVMA 61 EQLSA++D E +D +L++EL N + Q+ + YHLI D MRGD T + ++FDIS +VMA Sbjct: 5 NEQLSAIVDNEFIDEKLIDELLINKDKQELFSRYHLIGDVMRGDITDQFINFDISQQVMA 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 IE+ P + A + + + + F ++ Q +AA V+ V++ Sbjct: 65 KIEQ-PTKIAAVVELDTPTEKSKNNVISFVKR-------FGQYAIAASVAGVVVLASLVT 116 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + + + V T+P+ G A+PVSL T QQ+V++ R+ A+L D++ Sbjct: 117 SEPTFQNNSAGLEVLKTVPL-GAANPVSL-----QTTKKQSQQEVKKHNDRLEALLNDHQ 170 Query: 182 LQRRLH 187 LQ + Sbjct: 171 LQLQTQ 176 >UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WN9_COLP3 Length = 233 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 43/230 (18%) Query: 1 MQKEQLSALMDG------ETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFD 54 ++ E +S+L+D +++ + L++ + + + TW++YHLI D +R + P+ L D Sbjct: 4 IKTESISSLVDNYSPSTDDSISAHLVDNMLKDEHLSSTWQNYHLIGDVLRDEVPQSLQLD 63 Query: 55 ISSRVMAAIEEEP-VRQPATLIPEAQPAPHQWQK---------------------MPFWQ 92 +S + AAI +E + P + + + H F Sbjct: 64 LSETISAAIAQEATILSPNSSMKTSGKNSHLATDENVSINNHSAAQQTNSVVDATNRFKA 123 Query: 93 KVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGV 152 K+ + Q+ +AA + +IVGVQ N ++ S + V T+P+ G A+PVS V Sbjct: 124 KISSLIKPMGQVAIAASAAALMIVGVQ--NNVTDNSIVTPSQVVQTVPLSGYANPVSFNV 181 Query: 153 ---------PSEATANNGQQQQVQE----QRRRINAMLQDYELQRRLHSE 189 S+ +Q+ Q+RR+ A+L+D+ Q +L S Sbjct: 182 QSSQTQQSQQSKQQTQQAMNEQLASDRIAQQRRLQALLKDHNQQVKLGSN 231 >UniRef50_UPI0000E1152A sigma-E factor negative regulatory protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E1152A Length = 195 Score = 119 bits (298), Expect = 8e-26, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 23/203 (11%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 EQLSA +DGE + + +++ + ++Q+ W+ YHL+ D++RGD + + + A+ Sbjct: 6 EQLSAWVDGEASTTRV-DDVKADVQLQQKWQDYHLMGDTLRGDEVLLTDKSLLESIADAL 64 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 ++EP L P + + +P WQ V Q +Q VAA V+ +I+GVQ+YN Sbjct: 65 DDEP----TVLAPSTKS-----RVIPIWQNVVSLGKQSSQFAVAAGVAAVMILGVQNYNT 115 Query: 124 QSETSQQPETPVFNTLPMMGKA---SPVSLGVPSEATANNG---QQQQVQEQRRRINAML 177 ++ T F T P G +PVSL ++Q + EQR+RINA+L Sbjct: 116 EA-------TQPFMTAPTSGPQGGLAPVSLSQSRTIQTPEQQLNERQALLEQRKRINALL 168 Query: 178 QDYELQRRLHSEQLQFEQAQTQQ 200 D++ Q RL + Q+ + +Q Sbjct: 169 VDHQQQVRLQAAQITTNEQSEKQ 191 >UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepID=Q5P0C8_AZOSE Length = 190 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 26/180 (14%) Query: 1 MQKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 + K++LSAL+DG+ + + + + + ++ WE+Y LI D +RGD + + Sbjct: 3 LMKDKLSALLDGDLDEQAMSPVFDSIRRDRSLRSDWETYCLIGDVLRGDRNTSPG--LVA 60 Query: 58 RVMAAIEEEPV--RQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVI 115 RVMA IE EP PA+ A P Q + + + P +AA + + Sbjct: 61 RVMAGIEAEPTVLAPPASGSASAPPGAAQPRAG---RSLMP---------LAASIMGVAV 108 Query: 116 VGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINA 175 VG Y +E PE V G + + VP ATA + QV QR + A Sbjct: 109 VGWVAYTLNAE----PEGDVRTASAASGLQAVEKVSVPGGATAPSP---QVDRQREYLFA 161 >UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJA0_CELJU Length = 231 Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 26/185 (14%) Query: 4 EQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSALMD + + EL+ L + E++ TW Y L S+R D P + D +SRV Sbjct: 12 ESLSALMDNQASELELMRLLKAAGSDAELKSTWARYQLASASLRQDLPTLADMDFASRVS 71 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AA+ +EP A A + PW QL ++ VAA V+ AVI+GVQ Sbjct: 72 AALVDEPAHSSAVNQAAAAQS-------------LPWWQQLGRVAVAASVAGAVILGVQQ 118 Query: 121 YNGQS------ETSQQPETPVFNTLPMMGKASPVSLGVP----SEATANNGQQQQVQEQR 170 Y + P TPV NT + P + P +G + + QE R Sbjct: 119 YQQTQLPEAGIAGTNTPATPVVNTPAVNPPDLPSGINAPALSARTVAVQSGYENRPQESR 178 Query: 171 RRINA 175 R + Sbjct: 179 RVMFV 183 >UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU3_CHRVI Length = 183 Score = 99.1 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 25/149 (16%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +++LSAL DGE ++ LL+ LA + E+++ WE Y LI ++RG+ + ++ RV Sbjct: 6 RQRLSALQDGELAPAQVPALLDALAADTELRECWERYTLIGQAIRGEAIDPNARALADRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+ EP P +PAP R W + T + +AA V L ++ Sbjct: 66 RNALAAEPTI---LCPPRQKPAP------------RRWTGRYTGLALAASVLLVTVLATP 110 Query: 120 HYNGQSETSQQPETPV------FNTLPMM 142 + G +Q PV T+P+ Sbjct: 111 VFVGD-PVTQTAVGPVAARLVERQTIPLQ 138 >UniRef50_A0YCK7 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK7_9GAMM Length = 225 Score = 97.9 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 18/157 (11%) Query: 3 KEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMR-GDTPEVLHFDISSRV 59 +E +SALMDGE + EL ++ ++ ++ TW YHL+R+ M+ DT H DISS+V Sbjct: 6 RESISALMDGEADELELRRIMSTDNDESVRSTWARYHLVREVMQDNDTGAYRHLDISSQV 65 Query: 60 MAAI-------EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 AI EE + Q +++ AQ QK W + + VAA V++ Sbjct: 66 SMAIGHNNGRLSEEKIDQLESVV--AQKVSDDQQKTIVWWR------PMAGFAVAASVAM 117 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVS 149 AVIVGVQ + + PV + PM + PV+ Sbjct: 118 AVIVGVQTLETNATSELASGFPVASKAPMTSRVYPVA 154 >UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS36_9GAMM Length = 222 Score = 96.4 bits (238), Expect = 7e-19, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 24/128 (18%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 + LSALMDGE D EL L E++ E++ W+ YH++ +++GD + D S+ + Sbjct: 9 DQSLSALMDGEATDMELHRLLKEVSEGSELRDKWKRYHMVSSALKGDA-AITPIDYSAAI 67 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AAI+EE + + L + + +AA V+L ++GVQ Sbjct: 68 SAAIDEESSHRQSVLA--------------------GFVGSAGRFAIAASVALVAVLGVQ 107 Query: 120 HYNGQSET 127 N ++ Sbjct: 108 QLNSPLDS 115 >UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ05_9GAMM Length = 251 Score = 93.7 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 19/167 (11%) Query: 21 NELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQP 80 E+ PE+ + W+ YHLIR MR D DISS+VMAA++ EP Q + Q Sbjct: 1 REMDGEPELAEAWQRYHLIRSVMRNDEVAEPKLDISSQVMAALDAEPAFQVESETQSQQR 60 Query: 81 APHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLP 140 + + FW L M AA V+ VI+GVQ+ Q +T V N Sbjct: 61 SDQDTSRFQFW-------KPLASMAAAASVTAMVILGVQN------VEQGNQTIVDNRPA 107 Query: 141 MMGKASPVSLGVPSEA------TANNGQQQQVQEQRRRINAMLQDYE 181 A+ VS + NGQ+ ++ + I + +E Sbjct: 108 YTLPANSVSGDIVRAQFGNRNMIVENGQEPEIIRLSQGIERYIDQHE 154 >UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG0_9GAMM Length = 189 Score = 93.7 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 23/182 (12%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LSAL+DGET D E L++EL + E + WE YHLI DS+RG Sbjct: 7 KNERLSALVDGETDDFETRRLIDELVKSEEDRNQWERYHLIGDSLRGGLRNTAPAHFMDD 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + A+ +EPV Q +P + W + GVAA V++ +VG+ Sbjct: 67 IRTALADEPVLQG---VPRRES--------------PRWLKPVAGTGVAAAVAMVTLVGM 109 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 Q Q P T G S ++ +A + + R L+ Sbjct: 110 QMLGDQPGQDATPVAVESGTPAATGDVQTASSRAGADDSAQTEGGDSLDPRFAR---YLE 166 Query: 179 DY 180 ++ Sbjct: 167 NH 168 >UniRef50_UPI0001699368 sigma-E factor negative regulatory protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699368 Length = 113 Score = 92.5 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 ++E++SAL+D E + E+ + L P Q+ W YHLI D+MR + ++ D++S Sbjct: 5 EREKVSALVDDELSEHEISRHIGRLLETPSEQQAWARYHLIGDAMRQELGSLVQPDLASA 64 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + A++E EP AP ++ P W + +AA V+L + V Sbjct: 65 ISASLEREPTII----------APGMVKRRPA-----SWLKPVAGTAIAASVALVAVTMV 109 Query: 119 QHY 121 Sbjct: 110 PQL 112 >UniRef50_Q1QX28 Negative regulator of sigma E activity-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX28_CHRSD Length = 263 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 18/147 (12%) Query: 3 KEQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E SALMD E D E+ L +PE TW YHL R M+ D + D+S+ + Sbjct: 6 RESFSALMDNEGDDLEIRRALKALQGSPEEADTWRRYHLARSMMQRDRDVDVTTDLSAGI 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 MA + +EP P+ PAP ++ + A SL VI GVQ Sbjct: 66 MARLADEPA-------PQEAPAPSTSRRAAPFSFAGSAAVAAAV-------SLMVITGVQ 111 Query: 120 HYNGQSETSQQ-PETPVFNTLPMMGKA 145 YN + + E + +P G A Sbjct: 112 VYNANAPGDGEGAEFASSDAVPGQGGA 138 >UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA49_KANKD Length = 232 Score = 91.4 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 18/206 (8%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + K+ +SA +D E + A E + W YHLI MR D + L DISSR+ Sbjct: 15 LDKQSVSACVDSELEAFATESSFAFESEEMQLWSRYHLIGQVMR-DEAQHLDMDISSRIN 73 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I++EPV + P++ ++ PF QL +AA V+L V+ V Sbjct: 74 EQIDKEPVYTASPTKPKSNVI--RFPTNPF--------KQLAGYAIAASVALVVLFNV-- 121 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 T Q ++ + S S + T + +++ + I+ M + Sbjct: 122 -----GTQSQVDSQATTLAAVSNTNSQASGNAMTTNTQASNLSMAERQELQTIHDMFLKH 176 Query: 181 ELQRRLHSEQLQFEQAQTQQAAVQVP 206 E + + V VP Sbjct: 177 ESLSHSSLLPSVQVVSNQKVIPVSVP 202 >UniRef50_Q2SL39 Sigma factor algU negative regulatory protein MucA n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL39_HAHCH Length = 210 Score = 90.2 bits (222), Expect = 5e-17, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 16/194 (8%) Query: 3 KEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 KE +SAL+DGE + E+ LA H+ E+ TW Y +RD + + + H D+ + Sbjct: 6 KESMSALLDGEADELEVRRILAQSHDEEVMATWSRYQRVRDELHEEAAQWAHVDLRQGIW 65 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 +A+E+E + + E + AP + + W + AA + A V + G Sbjct: 66 SALEKEEGVDRSESVVEGEVAPEEARVGGGWWRGVAVAASVAF----AAVFMVEFSG--- 118 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQV---QEQRRRINAML 177 S QP V + + + G A ++ + + E R+NA L Sbjct: 119 ----GPGSTQPAPAVASGQQIAPSLNVNGAGSHLVADSSAESEDAIPFSAEHASRLNAYL 174 Query: 178 QDYELQRRLHSEQL 191 + Q L+ Q+ Sbjct: 175 MKHAEQAALNGSQV 188 >UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z8_ALHEH Length = 243 Score = 87.9 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQLSAL DGE EL L L +PE + Y+L RD ++ T E + ++ RV Sbjct: 11 EQLSALADGELSREELPLLLARLDESPERRARLARYYLARDGLQRATGEGIDLGLADRVR 70 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A+ +EP +P+ + +P +RP + +AA V+L ++ Sbjct: 71 DALRDEPAHRPSR------------RPLPGSHYLRP----AAGLALAASVALVGVLVWP- 113 Query: 121 YNGQSETSQQPETPVFN 137 + PV Sbjct: 114 ----GAGVDEGGVPVAQ 126 >UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRY9_9GAMM Length = 213 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 27/223 (12%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSAL+DGE E LL +L + E++ + Y LI D+++ + D+ +RV Sbjct: 6 NEQLSALVDGELRKGETDLLLRQLGRSAELKARFARYCLISDALQRNLSVATGSDLPTRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV- 118 A+E+EP P + R + M +A +LA++ Sbjct: 66 ARALEDEPSYGAEQHRHTRGP------------RGRLLLRPVAGMALAITGALAMVTMWP 113 Query: 119 QHYNGQSETSQQPETPV--FNTLPMMGKASPVSLGVPSEATANN---GQQQQVQEQRRRI 173 Q + + E P+ P+ + P+ V SE + + Q Q +R+ Sbjct: 114 QQSQKTASVQAEGERPIVAVQETPLQSRLRPIEATVASEHAVPSVAVETAARSQLQWKRL 173 Query: 174 NAMLQDYELQRRLHSEQLQ-FEQAQTQQAAVQVPGIQTLGTQS 215 D +LQ++L ++ E++ T Q +P ++ +G ++ Sbjct: 174 -----DPQLQQQLTDYLIKHSERSATGQMDAALPYMRIIGYEA 211 >UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IG9_SACD2 Length = 224 Score = 82.9 bits (203), Expect = 7e-15, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 3 KEQLSALMDGETLDSELLNEL---AHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 E LSAL+DGE+ + +L L A + E+++TW Y LI MR D DIS+ V Sbjct: 10 NESLSALVDGESNELDLRRVLKQSAADDELRETWRRYQLIGAVMRNDKDVAPSIDISAGV 69 Query: 60 MAAIEEEPVRQPAT 73 MAAI +EP A+ Sbjct: 70 MAAIADEPAPSVAS 83 >UniRef50_P38107 Sigma factor algU negative regulatory protein n=32 Tax=Pseudomonadaceae RepID=MUCA_PSEAE Length = 194 Score = 82.5 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 30/204 (14%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSA+MD E + EL LA + E++ TW Y L R M + P + DI++ V Sbjct: 7 QETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHRE-PTLPKLDIAAAV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AA+ +E AP + +K P+ + ++ VAA V+LAV+ GV+ Sbjct: 66 SAALADE-------------AAPPKAEKGPW--------RMVGRLAVAASVTLAVLAGVR 104 Query: 120 HYNGQS---ETSQQPETPVFNTLPMMGKASPVSLGVPSE--ATANNGQQQQVQEQRRRIN 174 YN + +QQ TP + G A N + +R+ Sbjct: 105 LYNQNDALPQMAQQGTTPQIALPQVKGPAVLAGYSEEQGAPQVITNSSSSDTRWHEQRLP 164 Query: 175 AMLQDYELQRRLHSEQLQFEQAQT 198 L+ + Q + + A+ Sbjct: 165 IYLRQHVQQSAVSGTESALPYARA 188 >UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B0_9NEIS Length = 167 Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 22/130 (16%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE LSAL+D E E L++ + + +++ W+ YHLI D+MR + ++ R Sbjct: 1 MKESLSALVDNELDGPEASKLISAASTDESLKEAWDEYHLIGDAMR--ASGLNSINVRHR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EEP AP +W + + V + +AA +S A +V Sbjct: 59 VAARLAEEPTVL----------APRRWLRQGSVRTV-------GAVALAASMSFAAVVAW 101 Query: 119 QHYNGQSETS 128 Q + + Sbjct: 102 QQLAVNGQGA 111 >UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX95_METML Length = 163 Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 14/146 (9%) Query: 2 QKEQLSALMDGET---LDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 EQ+SALMD E L+ + + + +TW YHLI D+MRGD L + Sbjct: 1 MSEQISALMDDEIAVEDAEHLIASIHTSRQASQTWHQYHLIGDAMRGD--VALGASFKQK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M IE+EP L P A + + P +AA + ++VG Sbjct: 59 LMQRIEQEP----TVLAPSASKVTAHKKTTAVLKDKLP-----ASWSIAASFAAVMVVGW 109 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGK 144 Q+E + V Sbjct: 110 LALQQQTEPNPAAALEVAQVTTTSES 135 >UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisrubri RepID=Q1N1C2_9GAMM Length = 192 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 32/203 (15%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LS+LMDGE + LL ++ NPE++ W YHL +D ++G + E D+S V Sbjct: 7 ESLSSLMDGEADEMSVHRLLGKVDKNPELKAKWSRYHLAQDILKGQSSEHSELDVSGLVS 66 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 +AI E P+++ RPW + M +AA V+ AV+VG Q Sbjct: 67 SAIAGE-------STPKSE---------------RPWLKAIGGMSIAASVAFAVVVGTQF 104 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSE---ATANNGQQQQVQEQRRRINAML 177 + Q + + P P + +++ ++++++ + R+N L Sbjct: 105 ----ALPGAQDSSFQVASKPSEEIVKPADVVRSETMIAQQSDSLNEEELRQAQNRLNDYL 160 Query: 178 QDYELQRRLHSEQLQFEQAQTQQ 200 + + L Q A+ Sbjct: 161 KQHAQDSALGQGQTAMPFARVVN 183 >UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R101_IDILO Length = 195 Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 + E SAL D + ++++ + L + + Q+ W Y +I +++GD + DIS RV Sbjct: 5 KSESTSALFDEQLINADEIEALLQDEQAQQEWHRYSVIHAAIKGDLNSDISLDISERVRV 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 ++ +E P + + W ++ VAA V++ ++ VQ Y Sbjct: 65 SVSQE----------SNVVKPGFGRSKSQNKAASRWFQPFAKVAVAASVAVVAVMTVQTY 114 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + P T P+ G PVSL Q Q++RR++ + L D++ Sbjct: 115 QQPATPDGSSAEPTLLTSPIGGGREPVSLNR-----VEPMSQISDQQRRRQVQSYLIDHQ 169 Query: 182 LQRRLHSEQLQFEQAQTQQAAV 203 Q L + Q E+ + + + Sbjct: 170 QQLMLQQKTEQAEKDEQSEQEL 191 >UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK3_THISH Length = 196 Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LS L+D E E L++EL +PE W YHLI D++RG D +SR Sbjct: 5 KNERLSTLVDDEADSFEVRRLVDELGKHPEDLAQWGRYHLIGDAIRGGLNRSAPPDFASR 64 Query: 59 VMAAIEEEPV 68 V A IE+EP Sbjct: 65 VSALIEQEPA 74 >UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX55_9GAMM Length = 199 Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 15/190 (7%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSALMD E + EL L ++ + E++ TW Y+ M G + DISSRV Sbjct: 6 RESLSALMDNEANELELQRLLKQVGSDAELRATWARYNAASAVMSGQDVSHMQLDISSRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AAIE E TL + Q LA I G + Sbjct: 66 RAAIEVESGVTRETLKQRLFRPIASFAVAASVAATVVIGGQQ----------LAQIGGAE 115 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE-QRRRINAMLQ 178 Y+G + +PV + S G + + +E R+R+ +Q Sbjct: 116 PYSG-GPVAASGASPVGLVNSLGATTVQASYGTEAIPVLQPAARTAYKELARQRMQMYMQ 174 Query: 179 DYELQRRLHS 188 ++ L+S Sbjct: 175 EHAEHSALNS 184 >UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosococcus oceani RepID=Q3J8C8_NITOC Length = 195 Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 21/181 (11%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSALMDGE E+ L E+++ WE+YHL+RDS++G P +D++ RV Sbjct: 11 NEQLSALMDGELPSEEIQSVLQAFKTQEEVRRRWENYHLVRDSLQGHLPGASRYDLARRV 70 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 ++ EP L+ E +++ + A + S ++G+Q Sbjct: 71 SQILDNEP----PLLLAEKHRGTDISRQLRQKWRYGAGLALAASL------SAVAVLGIQ 120 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 + ++ + TLP+ +SP + + + V+E R+N L + Sbjct: 121 SL---ASKPLISQSQIATTLPV--SSSPEIAPLQKNSRHWAVLEPDVKE---RLNTYLVN 172 Query: 180 Y 180 + Sbjct: 173 H 173 >UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE2 Length = 154 Score = 78.6 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 18/151 (11%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 E++S+L D E L ++ L+ +Q+ W+ Y ++RD ++ + D+S+R Sbjct: 1 MSEKISSLFDNEVEQESLDKEVSALSAKSAVQRNWKYYQVVRDVLQNNYSSSP--DLSAR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M AI++EP + A P Q V PW +GV A + + + Sbjct: 59 IMEAIDKEPTQMGAI-------RPKQNTASALVLPVMPWKIAAYTLGVFAAIGIFTMNIP 111 Query: 119 QHYNGQSETSQQPETPV------FNTLPMMG 143 N + Q + P F T + G Sbjct: 112 TISNESTVQLVQEDIPAEFMKKHFATTALNG 142 >UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BNK0_DELAS Length = 238 Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 23/202 (11%) Query: 2 QKEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSR 58 ++EQLSAL DGE +EL LA + Q+ W YHL+ D +R + D+ S Sbjct: 7 KREQLSALADGELSAAELQAVLAYAESDAGQQEWRMYHLVGDVLRSPELAHHSRHDVLSG 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPA---PHQWQKMPFWQKVRPWAAQL----TQMGVAACVS 111 + A + EP R ++ E P Q + + +R A A V+ Sbjct: 67 IRAQLANEPRRPLVSVATEELAQIAHPAQDRAVINGAPLRDAANASVFRWKMAAGFASVA 126 Query: 112 LAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSL-------------GVPSEATA 158 +G G L ++PV++ S Sbjct: 127 AVAAIGWSVMLGAPAGPGAAPGRALAALETGAPSAPVAVAGNAQDFPLGDTAQSSSVVAV 186 Query: 159 NNGQQQQVQEQRRRINAMLQDY 180 Q V + R++A+L + Sbjct: 187 AGSYGQSVMLRDPRLDALLASH 208 >UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilaceae RepID=C6X6N8_METSD Length = 151 Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 2 QKEQLSALMDGETL--DSELLNELAHNPE-MQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 K+Q+SAL+D E DSE L + E + +W +YHLI D MRG + D++ R Sbjct: 1 MKDQVSALVDEELSLEDSEYLYTAIRSSETLSDSWTTYHLIGDCMRG--SPIFKADLTDR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M +E+EPV L P+A+ A ++ + VAA V+ + VG Sbjct: 59 IMQQLEQEPV----VLAPKAKKAVYKTPTL---------------WSVAASVAAVMFVGW 99 Query: 119 QHYNGQSETSQQ 130 Q +T + Sbjct: 100 MVLQQQVQTHGE 111 >UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae RepID=Q2P4M6_XANOM Length = 299 Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 10/88 (11%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++QLSAL+DGE LL LAH+ E+ E + L D +RG D ++RV Sbjct: 18 RQQLSALVDGELSADASRFLLRRLAHDEELAGCHERWQLCGDVLRGAASAPAPLDFAARV 77 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQK 87 +AI EEP P AQPA + Sbjct: 78 RSAIAEEPA-------PRAQPAARSGAR 98 >UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellaceae RepID=C5V4B7_9PROT Length = 167 Score = 77.1 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 23/152 (15%) Query: 1 MQKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 M K ++SALMDGE + E +L ++ P Q W YH+I D +R PE +H DIS+ Sbjct: 1 MMKHEISALMDGELFEDEADSVLGQIKREPAAQSDWAVYHMIGDVLRQ--PEYVHRDISA 58 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 V ++ EP L P ++ + + A +V Sbjct: 59 IVRERLQNEP----TILAPRSRALKQKARVFALSAAASLLA--------------VGVVS 100 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVS 149 ET+ Q N P+ + P S Sbjct: 101 WMSLQISPETAPQMAMQQSNIRPVNMQIQPKS 132 >UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRM9_TERTT Length = 247 Score = 76.7 bits (187), Expect = 4e-13, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 4 EQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E +SAL+D + + +L L + + W+ YH I +MR + D+S+ + Sbjct: 18 ESISALVDNQGNELDLARVLKASDSDVHARSQWQRYHQISATMRSEDTSFAAIDLSAGIR 77 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI E + + R W L + +AA V++ +VGVQ Sbjct: 78 AAIASEQTLAGQPQVATS----------------RSWLHLLGKTSIAATVAVGFLVGVQQ 121 Query: 121 YNGQSETSQQ---PETPVFNTLPMMGKASPVSLGVP----------SEATANNGQQQQVQ 167 E F + P P T + Q+Q Sbjct: 122 LGQSPNAVNDGAIAEAEPFQAPDLNSAVIPAGFDSPQLSARTVSTGPSNTVYSSPSAQIQ 181 Query: 168 -EQRRRINAMLQDYELQ 183 +R + + D +LQ Sbjct: 182 GLPSQRPDTFISDPQLQ 198 >UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6ME50_9PROT Length = 182 Score = 76.3 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 26/154 (16%) Query: 2 QKEQLSALMDGETLD---SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 K ++SALMDGE + ++ + + ++Q W SYHLI D++R + L +ISSR Sbjct: 1 MKSKVSALMDGELDQQDVTHIIEAIRKDNDLQNEWRSYHLIGDTLRKSSR--LSMNISSR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V + EP + + Q ++ + + AA V + G+ Sbjct: 59 VSQKLITEPTVLSSNVTTAIQKQKYK----------------VFTLAAAASVVAMISAGL 102 Query: 119 QHYNGQSE-----TSQQPETPVFNTLPMMGKASP 147 N Q + P+M + P Sbjct: 103 IMNNLYKPQQIMIAEQSSQENSLTAAPIMVSSPP 136 >UniRef50_D2U9S3 Putative regulatory protein n=1 Tax=Xanthomonas albilineans RepID=D2U9S3_XANAL Length = 317 Score = 76.3 bits (186), Expect = 7e-13, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 17/156 (10%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++QLSAL+DGE E +L L H+ E+ E + L + +RG D S+RV Sbjct: 27 RQQLSALIDGELPADEARFVLRRLQHDEELAGCHERWQLCGEILRGRVSVPAPADFSARV 86 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+ E +Q Q +++ R W + +AA V+ + + Sbjct: 87 REAVAAEASQQV------------QARRLGAAGNRRTWR-WGGGVALAASVAGLALFVTR 133 Query: 120 HYNGQSETSQQP-ETPVFNTLPMMGKASPVSLGVPS 154 ++ S P + T ASP L P Sbjct: 134 ERLPEAPASVPPTQVASATTQTSASAASPARLPAPR 169 >UniRef50_A1WT22 Anti sigma-E protein, RseA n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT22_HALHL Length = 226 Score = 75.9 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 26/147 (17%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQLSAL+D E + L+ L H+ E + Y L+RD+++ + P D+ RV Sbjct: 12 EQLSALVDDELPREQRAFLMRRLDHDAEARGRLARYFLMRDALQRNLPPQPSTDLVERVR 71 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A + EP + W +AA V+ + Q Sbjct: 72 AELASEPAYDARRDAARQAASRD-------------WRRPAFGGLIAASVAAMTVFWWQ- 117 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASP 147 P P T P G P Sbjct: 118 -------GGAP--PGAGTEPTAGGGEP 135 >UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TNB4_RICCO Length = 162 Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KEQLSALMDGE E L L + E + W +YHLI D MRGD + S+ Sbjct: 1 MKEQLSALMDGEVDLDENPHLYTALCKSDEAETCWSTYHLIGDVMRGDF--HAQNGVYSK 58 Query: 59 VMAAIEEEPV 68 +M +E EP Sbjct: 59 IMKQLESEPT 68 >UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH42_THIDA Length = 185 Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 24/148 (16%) Query: 6 LSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 LSAL+DGE+ +E L + + +++TW YHLI D MRG P +R Sbjct: 23 LSALLDGESGRTESGAFLAAMRQDERLRRTWSEYHLIGDLMRGVGPAPEG--FMARFSER 80 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 + EP L P+ R A L + V VSL ++ Q Sbjct: 81 LAAEP----TVLAPQRH-----------IWPQRVVVASLASLAVWGAVSLTGLMPSQTPE 125 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSL 150 + + P P F + +PV Sbjct: 126 -SAPIASAPANPGFQQATL---VAPVEY 149 >UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadaceae RepID=A1TLE4_ACIAC Length = 207 Score = 74.0 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 12/208 (5%) Query: 2 QKEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSR 58 +EQLSAL DG ++E A E Q+ W YHLI D +R + + ++ R Sbjct: 7 MREQLSALADGGISEAEWGEAFAYARTAEGQEAWAVYHLIGDVLRSPELARPGNAALADR 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 VMA + E +PEA P + + + A ++ ++G Sbjct: 67 VMAQLAREERPAAEVALPEAAV-PLAAAIQSQGEAANAAVFRWKMVAGLASLAAVGVLGW 125 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 +G + L + V + + + QV + R++ +L Sbjct: 126 SGLSGGPSAGGETR------LAAVPSRMEVPAATTLVSATDPAGEPQVMLRDPRLDELLA 179 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVP 206 + + LQ + A + P Sbjct: 180 AHRQYG--GASALQMPAGFLRNATFETP 205 >UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus influenzae RepID=A7LQ63_HAEIN Length = 61 Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLH 52 MQKEQLSA MDGE + ++L + L + E+Q +W S+H +R MR ++ L Sbjct: 1 MQKEQLSAYMDGEQVKTDLTDALLRDEELQASWHSFHTVRSVMRKESAVFLG 52 >UniRef50_Q21XN7 Anti sigma-E protein, RseA, Burkholderiaceae specific n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21XN7_RHOFD Length = 214 Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 18/190 (9%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPEVL--HFDISS 57 +E +SAL DG+ D + + E + TW +YHL+ D +R P V D Sbjct: 9 RELISALADGQLRDEDFARTVEWVNQTEEARLTWHTYHLVGDVLRSGEPVVSARDADFLQ 68 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQM-----GVAACVSL 112 + +++E + PE + W+A + A +S Sbjct: 69 SLKLRLQQETPQVRPVNAPELVANDPGMTVAGVQNGSKYWSANDGRFRWKMLAGLASLST 128 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 ++G Q +G + + +P+ V L P + Q Sbjct: 129 VALIGWQIVSGWGDPGGARQ---LVQVPVQALQPEVGLTQPGVGAEPQRMIRDPQ----- 180 Query: 173 INAMLQDYEL 182 ++A+L ++ Sbjct: 181 LDALLAAHKQ 190 >UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas testosteroni RepID=D0J1H7_COMTE Length = 265 Score = 70.9 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 1 MQKEQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISS 57 +++EQLSAL+DGE ++ L A + E Q++W YHLI D +R + DI S Sbjct: 9 IKQEQLSALVDGEASSVQMQAVLSYAESDEGQQSWAMYHLIGDVLRSPELAHHSQHDILS 68 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPH 83 V A +E EP+R A A Sbjct: 69 GVRAHMEREPIRGIHLPGVTADVASS 94 >UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKU0_RICCO Length = 151 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Query: 5 QLSALMDGETLDS---ELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 QLSAL+DGE + E+ + W YH+IRD +R + + D++SR+MA Sbjct: 1 QLSALVDGEVDVERCEHIFLAAKSTGEVAQAWRDYHVIRDVLREEC--WVESDMTSRIMA 58 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMP 89 +++EP + + H + Sbjct: 59 QLDDEPTMLVPQAVTVSDKVTHIRPRFS 86 >UniRef50_A2SDG6 Putative transmembrane sigma-E factor negative regulatory transcription regulator protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDG6_METPP Length = 214 Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 15/166 (9%) Query: 4 EQLSALMDGETLD---SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFD--ISSR 58 E LSAL+DGE + L +++ W SY LI D +R + D R Sbjct: 11 EALSALVDGEADAGTAASLSARWRDEAALRERWHSYQLIGDVLRSEELAGGGRDAAFLQR 70 Query: 59 VMAAIEEEPVR-QPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 + A ++ EPV P + A ++ +R WA VAA ++G Sbjct: 71 LRAQLDREPVVLAPRADRVAEESAAALPRQRAAGGGLRRWATPA---AVAAG--FLAVIG 125 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASP--VSLGVPSEATANNG 161 + Q + P P++ +P V L P++ Sbjct: 126 --SLAVTRLSGPQADAPQLAQAPVVPAEAPQRVVLSAPADQVEPAS 169 >UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NWD1_CHRVO Length = 160 Score = 66.7 bits (161), Expect = 5e-10, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 22/132 (16%) Query: 2 QKEQLSALMDGETL---DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE +SALMDGE + + +A + ++ WE YHLI D+MR + ++ ++ Sbjct: 1 MKETISALMDGELDGPDADKAIAAIAGDKDLDDAWEQYHLIGDAMR--ANRLSSLNVRAK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EEP L P P + + + A +VG Sbjct: 59 VAARLAEEP----TVLAPRRWTRPRKARAASAVALAASVS-------------FAAVVGW 101 Query: 119 QHYNGQSETSQQ 130 Q + ++ Sbjct: 102 QQLSHRNAPPSA 113 >UniRef50_A3WPR2 Negative regulator of sigma E activity n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR2_9GAMM Length = 210 Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 5/205 (2%) Query: 4 EQLSALMDGETL--DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 E S+L D E D + + E W Y +IR +M+G+ DIS+ V A Sbjct: 5 ESWSSLFDSELDVLDQADFDAQLEDAEQSDRWYRYGVIRSAMKGELNHNGPLDISAAVAA 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 ++ P A A + + W L ++ VAA V+ +V VQ Y Sbjct: 65 EVDAMPSANNAVDSDNVVQAHTSSRSAAARKAALRWFNPLAKVAVAAGVAAVALVTVQTY 124 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + S E P T PM G PVS P+ A + + Q+ Q RR+ + + D++ Sbjct: 125 QTPMDASGV-EQPSILTNPM-GAREPVSFS-PNAAPSASAQKAIEQSMRRQAQSYMIDHQ 181 Query: 182 LQRRLHSEQLQFEQAQTQQAAVQVP 206 Q + S + + T+ Q P Sbjct: 182 QQLMMLSSEAANNEETTETNNQQDP 206 >UniRef50_A1U2X1 Anti sigma-E protein, RseA n=3 Tax=Marinobacter RepID=A1U2X1_MARAV Length = 188 Score = 66.3 bits (160), Expect = 7e-10, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 26/203 (12%) Query: 3 KEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 +E LS++MD E + + L+H +++ W+ + IRD M D++ V Sbjct: 6 RETLSSMMDDEADELSVRRLLSHGNQEDVRGQWQRWQQIRDLMHEQHGPADGIDVAGAVR 65 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++ E +P + ++ W+ VAA V +A+IVG Sbjct: 66 EALD-------GHARSEQARSPVEVPRVSVWR-----------WPVAAMVFMALIVGFGA 107 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE-QRRRINAMLQD 179 G + P + G A P + GV A Q++ E Q R++ L + Sbjct: 108 GAGWDTRTGVPVQAL-----AGGSAEPSASGVTLSAAVEEVALQRLDEDQLRQMRQYLLE 162 Query: 180 YELQRRLHSEQLQFEQAQTQQAA 202 + + + + A+ A+ Sbjct: 163 HAQHNSVGAGRGSVGYARLVSAS 185 >UniRef50_B1XZN3 Anti sigma-E protein, RseA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZN3_LEPCP Length = 215 Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 13/174 (7%) Query: 4 EQLSALMDGETLDSELLN---ELAHNPEMQKTWESYHLIRDSMRG-DTPEVLHFD--ISS 57 +++SAL+DGE +E+ + + ++ W +Y LI D +R D D Sbjct: 13 QRISALVDGELAAAEVADTCRAWRTDARLRADWHAYSLIGDVLRSTDLAHPPARDQAFLG 72 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQ----LTQMGVAACVSLA 113 + + EPV Q AP V P A+ +T +G+AA V++ Sbjct: 73 ALRERLALEPVVLAPARPEPPQQAPAAAVVNGRPASVTPLRARRPRWVTPVGIAAGVAMV 132 Query: 114 VIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ 167 + +E QQ P P + + A ++Q++ Sbjct: 133 AGLAWTMRPPATEPLQQMARMAL--PPPSQPVEPAA-RAEAVAVLAPDTREQLE 183 >UniRef50_C0N4S2 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S2_9GAMM Length = 186 Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 25/183 (13%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 Q+E LSA +DGE E LL + + + + + Y L D + G D++ R Sbjct: 6 QRELLSAFVDGELNKQEIDELLALMETDKDAKTEFMRYQLSSDVIHGYKSYSTPVDLTQR 65 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + AA+ +E + + A FW++ AA + +VGV Sbjct: 66 ISAALTDEKAH--SVEATDMPKAKVFALPNWFWKQTAGLAAAASI-------GALAVVGV 116 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 + Q +TS P+ +++ G S +Q+V+ R+N L Sbjct: 117 MN---QPQTSLSPQLAEIDSVQQQGL-------THSATNRWTVGEQEVE---DRLNNYLV 163 Query: 179 DYE 181 D+ Sbjct: 164 DHN 166 >UniRef50_A0Z441 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z441_9GAMM Length = 201 Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 33/164 (20%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE +SAL+DGE + ++ L + +PE + W+ R +R E D+S Sbjct: 7 MKESMSALIDGEGSELDIARVLKAVDEDPEARAHWQRIQQTRGLLRTGQIE-RQIDVSQA 65 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V ++E +P R+P L + VAA V+ A+++G Sbjct: 66 VRQSLESQPRRRP--------------------------LGPLGSLAVAASVTFAMVLGG 99 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQ 162 Q GQS +P+ +P G P+ P +A Sbjct: 100 QAMVGQSPL-GSAASPIATAVP--GGVVPIPGAAPVQARFGAPN 140 >UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae specific n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y877_NITMU Length = 188 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 +E++SALMDGE + ++ + + E+++ W +YHLI D++ EV DI+ R Sbjct: 1 MQEKISALMDGELDAGDASAMIEQFKNAEELREYWIAYHLISDAL--GQSEVKPLDITRR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPH 83 V A + EP + PAP Sbjct: 59 VNARLVAEPAVFAVSSTTLPYPAPK 83 >UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V2_9GAMM Length = 203 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 31/205 (15%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSAL D E + EL L +L +PE++ W H+ R ++ G+T D + V Sbjct: 15 ETLSALADDEAQELELRRVLRDLDGSPELRARWYRLHVARTALSGETVRP-SVDFAGSVR 73 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI+ EP + + W L VAA V+ V++G Q Sbjct: 74 AAIDAEPALEQGSS--------------------GNWRRTLGSFAVAASVATVVVLGGQQ 113 Query: 121 YNGQSETSQQPETPVFNTLPM----MGKASPV--SLGVPSEATA-NNGQQQQVQEQRRRI 173 S S + LP+ A PV S G + T + + R+R+ Sbjct: 114 LAATSSNSDRDLVARVAPLPVGVVNTTGAVPVRASFGTRAVPTLEPADRTAYRELARQRL 173 Query: 174 NAMLQDYELQRRLHSEQLQFEQAQT 198 Q++ L++ Q A+ Sbjct: 174 RRYSQEHAEHASLNTPQGMLPFARV 198 >UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putative n=1 Tax=Limnobacter sp. MED105 RepID=A6GP46_9BURK Length = 216 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 3 KEQLSALMDGETLDSELLNELAH-NPEMQKTWESYHLIRDSMR-GDTPEVLHFDISSRVM 60 EQ+SA++DGE ++EL L E +TW+ Y + D +R + D+ R+ Sbjct: 4 NEQISAMLDGELDEAELKLLLGAMGAEEAQTWQGYCAVGDLIRSSEMIAFHSPDLVGRIS 63 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT 102 A++E EP L + + + R A+ Sbjct: 64 ASLENEPTVVAPVLAAQMGRQTALQRVFAAGRSRRLLASVAA 105 >UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiaceae RepID=Q1LKM5_RALME Length = 218 Score = 60.9 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 7/94 (7%) Query: 4 EQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMRGDTPEVLHF--DISSRV 59 EQ+SALMDGE ++ L A + W Y LI D+MR + SR Sbjct: 16 EQISALMDGELAPHDVDAALGLAKDDAGMADWSMYQLIGDAMRSEELTHAGSTEAFLSRF 75 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQK 93 A +E EP + AQ H+ P W + Sbjct: 76 SAQLEAEPHVLVPAV---AQAGRHRLLVRPSWVR 106 >UniRef50_A3Y8F1 RNA polymerase sigma-70 factor n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8F1_9GAMM Length = 215 Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 72/212 (33%), Gaps = 22/212 (10%) Query: 4 EQLSALMDGETLDSELLNELAHN-PEMQKTWESYHLIRDSMRGDTPE-VLHFDISSRVMA 61 E LS+L D SE+ L + E Q +SY L + D + D+ SRV Sbjct: 13 ESLSSLFDDHCDASEIDEILEQDAKEWQMKMQSYALTSSVLHSDNHQDFAEMDLVSRVRD 72 Query: 62 AIEE---------EPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 I + E V QP KV +T + +AA V+ Sbjct: 73 GINKLDNDDASLGENVVALDKFQVPEQPQIATQNNAANEPKVHFLKQAVTGLAMAASVAF 132 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 VI G + E Q P F P +L +P + ++ +R Sbjct: 133 VVIGGGSYLL---EGEPQEAAPAFAQAP--------NLALPIDVKPLQQVNVELNSDNKR 181 Query: 173 INAMLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 + + L+ + Q + + Q A+ V+ Sbjct: 182 LQSYLRQHAEQSTMAAGQGMLPMARVVSYPVE 213 >UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA n=2 Tax=Nitrosomonas RepID=Q0AF64_NITEC Length = 191 Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 37/177 (20%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 ++++S LMDGE D++ ++N + + + WE YH+IRDS+ V+ D+S + Sbjct: 1 MRKKVSELMDGELEDTDAVTIINVVKSDSSLFSDWEVYHIIRDSLHQ---SVISIDLSEK 57 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + + +EP+ L+P + HQ +K +L VAA ++ + G Sbjct: 58 IRNKLIDEPL----LLVPYSHKT-HQNRK-----------QKLLGFSVAASIT-VLSAGW 100 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPV-------------SLGVPSEATANNGQ 162 + + + V+ T + KA+P S PS +T +N Sbjct: 101 LIFQSIEQHETALKE-VYVTEKINDKATPANEQRSLVTFQPAPSYSFPSVSTNSNYP 156 >UniRef50_A1VRT8 Anti sigma-E protein, RseA n=2 Tax=Polaromonas RepID=A1VRT8_POLNA Length = 213 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 15/182 (8%) Query: 4 EQLSALMDGETLDSELLNEL---AHNPEMQKTWESYHLIRDSMRGDT------PEVLHFD 54 E LSAL D + + E L H+ + W +YHLI D +R Sbjct: 9 ELLSALADDQLGEEEFAAALDACGHDESALECWAAYHLIGDVLRSPAGPRAPMAVGAELA 68 Query: 55 ISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT-QMGVAACVSLA 113 SR+ + +EP+ + + +A PA P + + + A V+ Sbjct: 69 FVSRLNQRLAQEPLITASPVSNKALPAAPLQSVADQIHHRGPASNDGNFRWKLVAGVASL 128 Query: 114 VIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRI 173 V +N + + +S + + + + +++ R+ Sbjct: 129 AAVSAIAWNASGLLAPASVPQLAQA-----SSSQIVVTSSQGPVVRDARLEELLAAHRQF 183 Query: 174 NA 175 A Sbjct: 184 GA 185 >UniRef50_A6SXQ6 Anti sigma-E protein n=3 Tax=cellular organisms RepID=A6SXQ6_JANMA Length = 182 Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 1 MQKEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISS 57 M +EQ+SA D E D + LA E + TW YH I D++R D L D ++ Sbjct: 6 MTREQISAFADNELSDGHVDIALAALRQQEGRDTWNMYHQIGDALRSDDLNTQLSADFNA 65 Query: 58 RVMAAIEEEPV 68 R+ A ++ E Sbjct: 66 RMFARLDAEAT 76 >UniRef50_C5CSE9 Anti sigma-E protein, RseA n=4 Tax=Comamonadaceae RepID=C5CSE9_VARPS Length = 222 Score = 58.6 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMR--GDTPEVLHFDISS 57 +EQ+SA DG E ++ + + + W +YHL+ D +R +P + Sbjct: 8 REQVSAFADGHLHGEEFARAIDAVCAEEDARGAWRAYHLVGDILRSGAHSPCSDSNAFLA 67 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKM--PFWQKVRPW---AAQLTQMGVAA-CVS 111 R + EP +P A+PA ++ + V W A + + VAA + Sbjct: 68 RFQQRLAAEPAIAAPARVPAAEPAVLTARRRAEAANEPVFRWKLVAGAASLVAVAAISWT 127 Query: 112 LAVI-VGVQHYNGQSETSQQPETPVFNTLPMMGKAS-PVSLGVPSEATANNGQQQQVQEQ 169 L +GV Q +Q + P + + QV + Sbjct: 128 LVGNGIGVPSPGAQIAAAQPQPAANSVLAAAAANSQLPPTAALTPTRVMVGNGSPQVMLR 187 Query: 170 RRRINAMLQDYEL 182 R++ +L+ ++ Sbjct: 188 DPRLDQLLEAHQQ 200 >UniRef50_B5JX07 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX07_9GAMM Length = 224 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 2 QKEQLSALMDGETLDSEL-LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E +SAL DGE+ E ++ L + Q W H +RD D + RVM Sbjct: 3 HNEWVSALADGESEQLERDIDRLLDSESAQAVWADIHQLRDQCDPKIQRKASPDFAGRVM 62 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRP 96 +A+E EP T + A + Q +RP Sbjct: 63 SALESEPTILAPTGVSNRPSAKESAAVVALPQWMRP 98 >UniRef50_B2I5Z9 Anti sigma-E protein, RseA n=7 Tax=Xylella fastidiosa RepID=B2I5Z9_XYLF2 Length = 241 Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 32/173 (18%) Query: 5 QLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 QLS L+D E E LL L HN E+ E + L D +RG D + RV A Sbjct: 19 QLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVLRGVALAPAPTDFTLRVQA 78 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 A+ E H+W+ + A V+ +++ + + Sbjct: 79 AVAAEATPVRT---------KHRWR---------------GGTALIASVAAIILLTLHGW 114 Query: 122 NGQSETSQQPETPVFNTL-----PMMGKASPVSLGVPSEATANNGQQQQVQEQ 169 + + E T P+ K + +S + + +Q Sbjct: 115 PPMAPPLTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRGKTTHNQQ 167 >UniRef50_Q0VP12 Sigma factor algU negative regulatory protein AlgS n=2 Tax=Alcanivorax RepID=Q0VP12_ALCBS Length = 194 Score = 55.9 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 66/190 (34%), Gaps = 22/190 (11%) Query: 4 EQLSALMDGETLDSELLNEL-AHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 E LSA +D ET + E + + T + L RD M + D ++R+ AA Sbjct: 6 EALSAFLDDETSELEARRVMRDIDDGDLDTLARWQLARDVMHHQPTMAVPADFNARLSAA 65 Query: 63 IEEE--PVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 + +E PV++PA L A+ A + W G Q Sbjct: 66 LADEALPVQRPAWLGGMARLAVAASVAAATVVGWQTWE------------------GSQA 107 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 NG + + P G+ S VS + A V + R+N ML + Sbjct: 108 ANGTAAPVMAAAADNRVSRPF-GETSLVSQAFMASNNAVVVPASAVPAAQPRVNNMLLRH 166 Query: 181 ELQRRLHSEQ 190 HS Q Sbjct: 167 SDFAARHSGQ 176 >UniRef50_B6BUK1 Putative uncharacterized protein n=1 Tax=beta proteobacterium KB13 RepID=B6BUK1_9PROT Length = 155 Score = 55.1 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 E +S+++D E +L LNEL ++ + ++ +Y +I D MR D +V +++ + Sbjct: 1 MSENISSIIDNELKGKDLDHGLNELKNSSAL-SSYRTYQMISDVMRNDYYDVNP-ELTDK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQP-APHQWQKMPFWQKVRPWAAQLTQMGV 106 +M+ I +EP + I Q A ++K + AA V Sbjct: 59 IMSKIHDEPTQFNNGFIHNNQSTATIDYRKYLLVFVLGLIAAFAISWAV 107 >UniRef50_Q2KW15 Sigma-E factor negative regulatory protein n=5 Tax=Bordetella RepID=Q2KW15_BORA1 Length = 161 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR-GDTPEVLHFDISSRVMAA 62 E +SA MDGE + + L++L +P+ +KTW+ YHLI D++R D + +R+ A Sbjct: 16 ESVSAWMDGEGSE-DFLHQLV-SPQGRKTWDEYHLIGDALRSADLMITPSANFQARLSRA 73 Query: 63 IEEE 66 +E E Sbjct: 74 LEAE 77 >UniRef50_UPI00016A9B00 sigma factor algU regulatory protein MucA, putative n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A9B00 Length = 93 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 QKEQLSALMDGETLDSELLNELAHN--PEMQKTWESYHLIRDSMRGDTPEVLHFD---IS 56 Q+E++SAL+DGE + L ++ + W YH+I D++R D + + Sbjct: 8 QRERVSALVDGEAPEGLSLKQILAGLGDAERAAWAHYHVIGDALRSDELTLEPAESGAFM 67 Query: 57 SRVMAAIEEEP 67 +R+ A++ EP Sbjct: 68 ARLSASLAAEP 78 >UniRef50_C7HX16 Anti sigma-E protein, RseA n=1 Tax=Thiomonas intermedia K12 RepID=C7HX16_THIIN Length = 269 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 12/93 (12%) Query: 1 MQKEQLSALMDGETL----------DSELLNELAHNPEMQKTWESYHLIRDSMRGD--TP 48 M +EQLSALMD E + + +A + ++ W Y I D +R TP Sbjct: 5 MSREQLSALMDAEGEYRGQSARTEATAAFIRHVASDEAARRDWLIYAQIGDVLRSADLTP 64 Query: 49 EVLHFDISSRVMAAIEEEPVRQPATLIPEAQPA 81 D RV AAI EP+ + + A Sbjct: 65 MPDEADFLQRVSAAIAREPIVLQPQAVTQTAAA 97 >UniRef50_Q6J0U5 MucA n=2 Tax=Pseudomonas aeruginosa RepID=Q6J0U5_PSEAE Length = 138 Score = 53.2 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGD 46 +E LSA+MD E + EL LA + E++ TW Y L R M + Sbjct: 7 QETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHRE 53 >UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisseria RepID=C0EK24_NEIFL Length = 186 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVL 51 E +SALMDGE L E+ + + + E + W YH+I D +R + Sbjct: 14 EYVSALMDGEALTDEMPDAVLADEEALRAWHEYHIIGDCIRQSAAASV 61 >UniRef50_B2JFJ6 Anti sigma-E protein, RseA n=58 Tax=Burkholderia RepID=B2JFJ6_BURP8 Length = 217 Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 4 EQLSALMDGETLDSE----LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHF---DIS 56 E LSA +DGE D E +L L + + + W YHLI D++R D V Sbjct: 23 ELLSAFVDGELFDGEHPNTILAAL--DQKDRAAWSCYHLIGDALRSDDLAVSPATSSAFL 80 Query: 57 SRVMAAIEEE 66 + A E E Sbjct: 81 AGFSARFENE 90 >UniRef50_Q608M0 Conserved domain protein n=1 Tax=Methylococcus capsulatus RepID=Q608M0_METCA Length = 168 Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 15/124 (12%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 ++ S +D E +E L + +++ T Y+LI + +R + ++ V Sbjct: 8 QKASVFVDNEMDPTEAEGYLRLIEKREDVRSTVSRYYLIGEVLR-TGRAPVGNGLAEAVA 66 Query: 61 AAIEEEPVRQPATLIPEAQP-----------APHQWQKMPFWQKVRPWAAQLTQMGVAAC 109 I EP + + A + W+ V +AA + A Sbjct: 67 RRITLEPTIFAPARVRTSDRLRRHIVTGALAASMAAVAVFVWRGVSGFAAMDGGLSAGAG 126 Query: 110 VSLA 113 V+LA Sbjct: 127 VALA 130 >UniRef50_B8KFU9 Anti-sigma factor MucA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KFU9_9GAMM Length = 208 Score = 49.4 bits (116), Expect = 8e-05, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 52/170 (30%), Gaps = 8/170 (4%) Query: 4 EQLSALMDGET---LDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSAL D E LL EL PE+ W H R +M G+ ++ V Sbjct: 20 ETLSALADNEAQELELRRLLRELESTPELGDRWYRLHAARAAMHGEAVRP-SAGFANSVR 78 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGV---AACVSLAVIVG 117 AAI+ EP Q + + V QL A V+ + Sbjct: 79 AAIDAEPALQQNSAGSFRRALGSFAVAASVAAVVVLGGQQLALTSAGGNADLVARVAPLP 138 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ 167 V N Q LP + A + + Q+ + Sbjct: 139 VGVVNTTGAVPVQASYGTR-ALPTLQPADRTAYRELARQRLRRYSQEHAE 187 >UniRef50_C6M5L2 Putative anti sigma-E protein RseA n=2 Tax=Neisseria RepID=C6M5L2_NEISI Length = 182 Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 9 LMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM-----AAI 63 LMDG+ + E+L+ L + + W YHL+ D MR D A I Sbjct: 2 LMDGDQVSEEMLDRLLSDDAAAEAWYEYHLLGDCMRYKEGTGRDADFMQSAAFTATLAEI 61 Query: 64 EEEPVRQPATLIPEAQPAPHQWQK 87 EE ++ + P + Q Sbjct: 62 SEEHKQRHEAEVAAVMPVVKEVQA 85 >UniRef50_C9Y9K3 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9K3_9BURK Length = 198 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 33/213 (15%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDIS--S 57 +EQ++AL DGE + LL+ + P + W +H + S+RG+ E D++ Sbjct: 10 QEQIAALADGELSADDIGTLLDAMEAEPATYEAWAVHHAVVASVRGERVEAPSGDLAFWQ 69 Query: 58 RVMAAIEEE---PVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAV 114 + + +E PV +P FW KVR A+ + + V LA Sbjct: 70 TLQKRLAQESDGPVFHNEIQVPNPVIVASSASNESFW-KVRALASFVMVLAVGG---LAA 125 Query: 115 IVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRIN 174 ++ Q E+ + P A+ V+ V + ++ Sbjct: 126 VLWPQ--------GDPSESFALSGTPAAPVATEVA-----------TADGSVMLRNPELD 166 Query: 175 AMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPG 207 A++ ++ Q HS Q + A + PG Sbjct: 167 ALMAAHQ-QMGGHS-AWQAPSGFLRNATYERPG 197 >UniRef50_A4GHT7 Putative uncharacterized protein n=1 Tax=uncultured marine bacterium EB0_39H12 RepID=A4GHT7_9BACT Length = 222 Score = 47.4 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 KE++SAL DGE + E +L E++ NPE ++ W + L +++ D + D+S Sbjct: 1 MKEKISALADGELSEFETRRVLEEISSNPEYREFWRNIQLSKETFNEDDVMLNSRDLSE 59 >UniRef50_A6VUA1 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUA1_MARMS Length = 227 Score = 44.4 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 5 QLSALMDGETLDSELLNELAHNP-EMQKTWESYHLIRDSMRGDTPEVLHFD--ISSRVMA 61 LSA+ DGE + +L + + E+ + E+YHLI+ ++ D+ + + + R+ A Sbjct: 38 SLSAMFDGEATEQDLELLIDGDSAELSRQLEAYHLIQQALHKDSSVAVGLEDSLMLRIRA 97 Query: 62 AIE 64 I+ Sbjct: 98 GID 100 >UniRef50_B8KRG1 Anti-sigma factor MucA, putative n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG1_9GAMM Length = 192 Score = 43.2 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 41/185 (22%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSA+ DGE D +L L + +P +++ W + Sbjct: 10 REALSAIGDGEGTDLDLARVLKAVDEDPSVREEWLR--------------------QQQT 49 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A I +P + + ++ + L + VAA V+LAV+ G Q Sbjct: 50 RARITRQPAVEIDVSAAVSAAIAAAPKQ-------QRRYNPLVGVAVAASVTLAVVFGGQ 102 Query: 120 HYNGQSETSQQPETP----VFNTLPMM---GKASPV--SLGVPSEATAN-NGQQQQVQEQ 169 + Q+ ++ E P +P+ G V L PS A+ N Q +EQ Sbjct: 103 -FALQTGSAPLAEVPGGVMSLQGMPVQASYGSNDRVLGRLERPSPASTPVNPYSQLAREQ 161 Query: 170 RRRIN 174 +R+ Sbjct: 162 YQRLG 166 >UniRef50_Q4PK19 Putative uncharacterized protein n=1 Tax=uncultured bacterium MedeBAC49C08 RepID=Q4PK19_9BACT Length = 233 Score = 42.4 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 +LSAL+DGET + E L+ E+ N E++ W + + + + +I+S VM Sbjct: 7 HRLSALLDGETSEFETRRLVEEINKNSEIKNLWIRMNKTKSLLTAEIG-FSPRNIASSVM 65 Query: 61 AAIE 64 ++ Sbjct: 66 EELD 69 >UniRef50_A6EYD0 Putative uncharacterized protein n=1 Tax=Marinobacter algicola DG893 RepID=A6EYD0_9ALTE Length = 241 Score = 39.7 bits (91), Expect = 0.074, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%) Query: 1 MQKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 M E LSA +D E D+E + ++L +P + + ++ + + + Sbjct: 3 MTDETLSAFLDNELTDAEMEAVRDQLEKDPTLADRLAEMASVDAELQAHYGSIDDRPMPA 62 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 + +EE+ R A PA P+W+++ + + A V+L + Sbjct: 63 SITQMLEEKASR-------SAAPAQDNVVTFPWWRRLPGHTGKAIAAAIIAGVALTQWLT 115 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPV 148 V + V ++ P G+ V Sbjct: 116 V---ATDGDPMSPAVANVLDSQP-SGEVYQV 142 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130... 217 2e-55 UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 ... 202 5e-51 UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 T... 179 6e-44 UniRef50_P44791 Sigma-E factor negative regulatory protein homol... 172 9e-42 UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein Rs... 168 1e-40 UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoni... 166 4e-40 UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA ... 166 5e-40 UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein Rs... 165 9e-40 UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 T... 160 3e-38 UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella R... 154 2e-36 UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=A... 148 1e-34 UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=M... 148 2e-34 UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 ... 140 3e-32 UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment... 134 3e-30 UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 T... 133 6e-30 UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas ... 131 2e-29 UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulat... 124 2e-27 UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negativ... 117 3e-25 UniRef50_UPI0000E1152A sigma-E factor negative regulatory protei... 112 9e-24 UniRef50_Q21XN7 Anti sigma-E protein, RseA, Burkholderiaceae spe... 109 7e-23 UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA ... 109 9e-23 UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=I... 105 1e-21 UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococc... 104 2e-21 UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadacea... 102 8e-21 UniRef50_A3Y8F1 RNA polymerase sigma-70 factor n=1 Tax=Marinomon... 101 1e-20 UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 100 3e-20 UniRef50_Q2SL39 Sigma factor algU negative regulatory protein Mu... 100 4e-20 UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisr... 99 9e-20 UniRef50_A0YCK7 Sigma factor algU negative regulatory protein Mu... 98 2e-19 UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1... 97 4e-19 UniRef50_A1U2X1 Anti sigma-E protein, RseA n=3 Tax=Marinobacter ... 94 3e-18 UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella kor... 94 4e-18 UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB ... 93 6e-18 UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma p... 92 1e-17 UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosoco... 91 2e-17 UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepI... 91 4e-17 UniRef50_C5CSE9 Anti sigma-E protein, RseA n=4 Tax=Comamonadacea... 91 4e-17 UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatiu... 90 5e-17 UniRef50_A1WT22 Anti sigma-E protein, RseA n=1 Tax=Halorhodospir... 90 6e-17 UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=... 90 6e-17 UniRef50_C0N4S2 Anti sigma-E protein RseA, N-terminal domain n=1... 89 7e-17 UniRef50_P38107 Sigma factor algU negative regulatory protein n=... 89 1e-16 UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acido... 89 1e-16 UniRef50_UPI0001699368 sigma-E factor negative regulatory protei... 88 2e-16 UniRef50_B5JX07 Anti sigma-E protein RseA, N-terminal domain n=1... 88 2e-16 UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas ... 88 2e-16 UniRef50_C9Y9K3 Putative uncharacterized protein n=1 Tax=Curviba... 87 3e-16 UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivib... 87 4e-16 UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax... 87 5e-16 UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 ... 86 7e-16 UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera... 86 8e-16 UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellace... 85 1e-15 UniRef50_A3WPR2 Negative regulator of sigma E activity n=1 Tax=I... 85 1e-15 UniRef50_Q0VP12 Sigma factor algU negative regulatory protein Al... 85 2e-15 UniRef50_A2SDG6 Putative transmembrane sigma-E factor negative r... 82 1e-14 UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnico... 82 1e-14 UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilac... 82 1e-14 UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=S... 81 2e-14 UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae spe... 81 2e-14 UniRef50_Q1QX28 Negative regulator of sigma E activity-like prot... 81 3e-14 UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophila... 81 4e-14 UniRef50_D2U9S3 Putative regulatory protein n=1 Tax=Xanthomonas ... 79 7e-14 UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitr... 79 1e-13 UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus... 78 2e-13 UniRef50_B2I5Z9 Anti sigma-E protein, RseA n=7 Tax=Xylella fasti... 77 3e-13 UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putat... 77 4e-13 UniRef50_B8KFU9 Anti-sigma factor MucA n=1 Tax=gamma proteobacte... 77 4e-13 UniRef50_B1XZN3 Anti sigma-E protein, RseA n=1 Tax=Leptothrix ch... 77 5e-13 UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA ... 76 7e-13 UniRef50_A1VRT8 Anti sigma-E protein, RseA n=2 Tax=Polaromonas R... 76 9e-13 UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 ... 74 2e-12 UniRef50_A6SXQ6 Anti sigma-E protein n=3 Tax=cellular organisms ... 74 2e-12 UniRef50_A0Z441 Sigma factor algU negative regulatory protein Mu... 74 4e-12 UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas tes... 71 2e-11 UniRef50_B6BUK1 Putative uncharacterized protein n=1 Tax=beta pr... 71 3e-11 UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobac... 70 5e-11 UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae Rep... 70 5e-11 UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromob... 69 1e-10 UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiac... 68 2e-10 UniRef50_A4GHT7 Putative uncharacterized protein n=1 Tax=uncultu... 68 3e-10 UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax... 66 1e-09 UniRef50_Q608M0 Conserved domain protein n=1 Tax=Methylococcus c... 64 3e-09 UniRef50_B2JFJ6 Anti sigma-E protein, RseA n=58 Tax=Burkholderia... 62 1e-08 UniRef50_C6M5L2 Putative anti sigma-E protein RseA n=2 Tax=Neiss... 58 2e-07 UniRef50_C7HX16 Anti sigma-E protein, RseA n=1 Tax=Thiomonas int... 57 4e-07 UniRef50_UPI00016A9B00 sigma factor algU regulatory protein MucA... 53 6e-06 UniRef50_Q2KW15 Sigma-E factor negative regulatory protein n=5 T... 53 8e-06 UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisser... 53 8e-06 UniRef50_Q6J0U5 MucA n=2 Tax=Pseudomonas aeruginosa RepID=Q6J0U5... 47 4e-04 Sequences not found previously or not previously below threshold: UniRef50_A6VUA1 Putative uncharacterized protein n=1 Tax=Marinom... 69 1e-10 UniRef50_D0KYN0 Putative uncharacterized protein n=1 Tax=Halothi... 46 8e-04 UniRef50_B8KRG1 Anti-sigma factor MucA, putative n=1 Tax=gamma p... 46 0.001 UniRef50_C4KZK7 Putative uncharacterized protein n=1 Tax=Exiguob... 46 0.001 UniRef50_B7J9J6 Conserved domain protein n=2 Tax=Acidithiobacill... 43 0.006 UniRef50_A4BBJ1 Putative uncharacterized protein n=1 Tax=Reineke... 43 0.011 UniRef50_C3X7H9 Predicted protein n=1 Tax=Oxalobacter formigenes... 42 0.011 UniRef50_UPI00016C377E hypothetical protein GobsU_01197 n=1 Tax=... 42 0.015 UniRef50_Q47K82 Putative uncharacterized protein n=1 Tax=Thermob... 42 0.018 UniRef50_C6NRW8 Putative uncharacterized protein n=1 Tax=Acidith... 41 0.037 UniRef50_D1T9C4 Putative transmembrane anti-sigma factor n=1 Tax... 40 0.055 UniRef50_A6NW07 Putative uncharacterized protein n=1 Tax=Bactero... 40 0.071 UniRef50_B8GD42 Putative transmembrane anti-sigma factor n=3 Tax... 39 0.080 UniRef50_A1BAS8 Putative uncharacterized protein n=1 Tax=Paracoc... 39 0.089 UniRef50_D2CKL7 CppK n=3 Tax=Bacteria RepID=D2CKL7_PSEAH 39 0.095 >UniRef50_P0AFX8 Sigma-E factor negative regulatory protein n=130 Tax=Enterobacteriaceae RepID=RSEA_ECOL6 Length = 216 Score = 217 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM Sbjct: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH Sbjct: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY Sbjct: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 Query: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ Sbjct: 181 ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 >UniRef50_A1JKJ7 Sigma E factor negative regulatory protein n=31 Tax=Enterobacteriaceae RepID=A1JKJ7_YERE8 Length = 218 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 138/218 (63%), Positives = 168/218 (77%), Gaps = 2/218 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSALMDGETLDSEL+ L+ + +Q++W+SYHLIRD++RGD EVLH DI+SRV Sbjct: 1 MQKEKLSALMDGETLDSELIGSLSKDKALQQSWQSYHLIRDTLRGDVGEVLHLDIASRVA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++ EP R +PE+QP PH WQKMPFWQKVRPWA+Q+TQ+GVAACVSLAVIVGVQ Sbjct: 61 EALKNEPARFVPIAVPESQPQPHVWQKMPFWQKVRPWASQITQVGVAACVSLAVIVGVQQ 120 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAM--LQ 178 YN + + QPE P FNTLPMMGKASPVS GVP++ + QQ QVQEQRRR+N M LQ Sbjct: 121 YNQPASGNLQPEAPAFNTLPMMGKASPVSFGVPADGSFGTSQQHQVQEQRRRVNMMTQLQ 180 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ 216 D+ELQRRL + + + QAA+QVPG Q+LG Q Q Sbjct: 181 DFELQRRLPQTDVSQVPSASTQAAIQVPGTQSLGMQQQ 218 >UniRef50_Q0I576 Sigma-E factor negative regulatory protein n=8 Tax=Pasteurellaceae RepID=Q0I576_HAES1 Length = 233 Score = 179 bits (454), Expect = 6e-44, Method: Composition-based stats. Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 4/194 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE LSA +DGE ++ + L N ++Q +W +YHLIR +R ++ +L D ++R+ Sbjct: 40 MQKELLSAYIDGEHCGNKFTDTLCQNKDLQNSWSNYHLIRSIIRKESKVLLGSDFTARMG 99 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I++E Q + E+QP + +K+PF QK+R + + QM VAA V ++GVQ Sbjct: 100 TLIKQEEKIQIEHSL-ESQPTLAEVEKLPFIQKIRSSFSPMLQMAVAATVCFVAVLGVQS 158 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 +N + +TP TLP +S +P + Q+QV+++ +RI MLQ+Y Sbjct: 159 FNHERAGKNTLDTPTLQTLPFNNSVQEISYNIPRKEII---TQEQVEQRNKRIGIMLQNY 215 Query: 181 ELQRRLHSEQLQFE 194 ELQRRLH+ Sbjct: 216 ELQRRLHTNSFGLP 229 >UniRef50_P44791 Sigma-E factor negative regulatory protein homolog n=16 Tax=Haemophilus influenzae RepID=RSEA_HAEIN Length = 195 Score = 172 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 4/199 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKEQLSA MDGE ++++L++ L + E+Q +W S+H +R MR ++ L D ++++ Sbjct: 1 MQKEQLSAYMDGEQVETDLIDALLRDEELQASWHSFHTVRSVMRKESAVFLGADFTAKMA 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 IE E V++ + +QP P F QK++ + A +TQ+ VAA V L ++GVQ Sbjct: 61 DLIELEDVKKVDVIAV-SQPEPEDAHNSVFMQKLKAFFAPMTQVAVAAGVCLVAVLGVQS 119 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 +N +++ S PETPV TLP VS PS+ T Q++++ RRI AMLQ+Y Sbjct: 120 FNNKNDASNLPETPVLQTLPFNNAVQEVSYNAPSKDTL---TSDQLEKKSRRIGAMLQNY 176 Query: 181 ELQRRLHSEQLQFEQAQTQ 199 ELQRR+HS+ L +Q + Sbjct: 177 ELQRRMHSDALDVSSSQVR 195 >UniRef50_C9PL53 Sigma factor RpoE negative regulatory protein RseA n=2 Tax=Vibrionaceae RepID=C9PL53_VIBFU Length = 213 Score = 168 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 115/205 (56%), Gaps = 9/205 (4%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE+LSALMDGE +D L+ ELA + + TW++YHLI D +RG+ PE ++I+ V Sbjct: 7 DKEKLSALMDGELVDKLLIQELASDRDGLDTWKNYHLIGDVLRGEAPERPEWNIAESVAL 66 Query: 62 AIEEEPVRQPATLIP------EAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVI 115 A+E EP + Q + +++ W +Q Q+ VAACVSLAVI Sbjct: 67 ALENEPAHSTFSTATPHITDINQARIESQPKPEQARRQLPAWLSQFGQVAVAACVSLAVI 126 Query: 116 VGVQHYNGQ-SETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRIN 174 +GVQ Y G T QQ + PV T+P G A PVSL S + + VQEQRRR+N Sbjct: 127 LGVQQYGGTDGATPQQDQLPVLQTIPFSGSAEPVSLTRES--VERHSNEANVQEQRRRVN 184 Query: 175 AMLQDYELQRRLHSEQLQFEQAQTQ 199 A+LQDYELQ RL+SE L + Sbjct: 185 ALLQDYELQLRLNSENLGSHSDPVE 209 >UniRef50_D2TX84 Anti sigma E protein n=1 Tax=Arsenophonus nasoniae RepID=D2TX84_9ENTR Length = 208 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 99/203 (48%), Positives = 140/203 (68%), Gaps = 1/203 (0%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 M +E+LSALMDGE DSEL++ + + +QK WESYHLIRDS+RGD EV+H DI+ +V Sbjct: 1 MHRERLSALMDGEIFDSELIHTILQDVSLQKRWESYHLIRDSLRGDINEVIHLDITGKVE 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A+ EP++ IPE+QP P W+ MPFW+K+RPWA Q+TQ+GVAA V++AVI GVQ+ Sbjct: 61 QALASEPIQIAPDAIPESQPEPATWRLMPFWRKLRPWANQITQVGVAASVAVAVIAGVQN 120 Query: 121 YNGQS-ETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 YN + ET + ++P+FNT+P+MG ASPVSL V ++ Q +Q++++ RR+ MLQ Sbjct: 121 YNTSNIETDGKSDSPIFNTVPIMGAASPVSLNVSNDQLFAQPQTEQLEQRNRRLGLMLQQ 180 Query: 180 YELQRRLHSEQLQFEQAQTQQAA 202 YEL+RR Q + + Sbjct: 181 YELERRSTLNQSVTSSSAIVEKP 203 >UniRef50_A5F5G6 Sigma-E factor negative regulatory protein RseA n=47 Tax=Vibrionales RepID=A5F5G6_VIBC3 Length = 212 Score = 166 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 116/204 (56%), Gaps = 8/204 (3%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE+LSALMDGE +D+EL+ LA + + + TW++YHLI D +RG+ P ++I+ V Sbjct: 9 DKEKLSALMDGEMIDNELILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWNIAESVAL 68 Query: 62 AIEEEPVRQPATLIPE-----AQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 A+E EP P Q + +++ W +Q Q+G+AACVSLAVI Sbjct: 69 ALENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKRQLPAWLSQFGQVGIAACVSLAVIF 128 Query: 117 GVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAM 176 GVQ Y GQS + E PV T+P+ G A PVSL S + +QEQRRR+NA+ Sbjct: 129 GVQQYGGQSSG-VENELPVLQTIPLAGSAEPVSLTRDS--VEKHAPDSSMQEQRRRVNAL 185 Query: 177 LQDYELQRRLHSEQLQFEQAQTQQ 200 LQDYELQ RL+SE Q + Sbjct: 186 LQDYELQLRLNSENSASHQHPVES 209 >UniRef50_D0YVX7 Sigma factor RpoE negative regulatory protein RseA n=9 Tax=Vibrionaceae RepID=D0YVX7_LISDA Length = 216 Score = 165 bits (418), Expect = 9e-40, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 113/208 (54%), Gaps = 9/208 (4%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE++SAL+DGE LD ++N L + E + +W Y+LI D MRGD P+ +DI++ V Sbjct: 3 DKEKISALLDGEDLDQSIINALTVDKESELSWHDYNLIGDVMRGDAPQCKEWDIAANVAL 62 Query: 62 AIEEEPVRQPATL-----IPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 A++ EP +T Q + + W Q Q+ VAACVSLAVIV Sbjct: 63 ALDAEPAHSVSTAEVVDIQVAKDIVESQPTPQQAKRFLPAWLTQFGQVAVAACVSLAVIV 122 Query: 117 GVQHYNGQSETSQQPE--TPVFNTLPMMGKASPVSLGVPSEATANN--GQQQQVQEQRRR 172 GVQ YNG + PV T+P GKA PVS S +++ + Q+ EQRRR Sbjct: 123 GVQQYNGSDSNATNAPETMPVLQTIPFAGKAEPVSFTRDSLRNSHSSAPSEAQLMEQRRR 182 Query: 173 INAMLQDYELQRRLHSEQLQFEQAQTQQ 200 INAMLQDYELQ R ++E ++ + + Sbjct: 183 INAMLQDYELQLRFNAEDGSIDKTKLET 210 >UniRef50_B6EKN4 Sigma-E factor negative regulatory protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKN4_ALISL Length = 205 Score = 160 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 6/203 (2%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 K ++SA +D E +D+ + L+ +TW +YHLI D MRGD P ++I++ V Sbjct: 3 DKAKISAFIDNEEMDNAFIASLSETSNA-ETWANYHLIGDVMRGDAPSSKEWNIAANVAL 61 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 A+E+E Q + P Q + + W Q +Q+ +AAC SL VIVGVQ Y Sbjct: 62 ALEDEAAHQMNDNVT--AFIPSQPTPSEAKKTMPSWLTQFSQVAMAACFSLVVIVGVQQY 119 Query: 122 NGQSET--SQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 N + V +T+P G A PVSL S + + V EQR+RINAMLQD Sbjct: 120 NNDDPNGIPTSGDIQVLDTIPFSGSAEPVSLTRDSL-VPKSSNEADVMEQRKRINAMLQD 178 Query: 180 YELQRRLHSEQLQFEQAQTQQAA 202 YELQ RL++ ++ +Q + Sbjct: 179 YELQLRLNAHDGSVDRELLEQNS 201 >UniRef50_A3D1V1 Anti sigma-E protein, RseA n=22 Tax=Shewanella RepID=A3D1V1_SHEB5 Length = 208 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 4/205 (1%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + +E +SA +DGET + + EL+ + W +YH+I D+MRG+ P+ + D+S+ + Sbjct: 4 LGQEWVSAAVDGETDA-QTMAELSADTHSHDKWHNYHMIGDAMRGELPQNIVLDLSASIA 62 Query: 61 AAIEEEPVRQPA--TLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 AAIE EP A P Q +V P Q Q +AA V++ IVGV Sbjct: 63 AAIELEPAIVAPKHHASNVAAPVTPQIAANAQQNRVVPLFKQFGQYAIAATVAMFAIVGV 122 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 Q+YN ++ + P +PV T P++G ASPVSL QV EQRRRIN +Q Sbjct: 123 QNYNQSADDAASP-SPVLITRPLIGSASPVSLQTGPVQQNQGYTNDQVNEQRRRINTYIQ 181 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAV 203 D+ LQ+RL++ + + + V Sbjct: 182 DHMLQQRLNTGAVVEDNTEVVPVPV 206 >UniRef50_A4SRD7 Sigma-E factor regulatory protein RseA n=3 Tax=Aeromonadaceae RepID=A4SRD7_AERS4 Length = 197 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 108/189 (57%), Gaps = 8/189 (4%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 KEQLSALMDG+ D E+L EL +P +Q TW YHLI D+MRGD P L D+S +MAA Sbjct: 4 KEQLSALMDGDLSDVEVLGELGMDPALQDTWSRYHLIGDAMRGDLPVNLQLDLSDSIMAA 63 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 +E+EP + AP R Q+ Q +AA V+ AVI GVQ Y Sbjct: 64 LEDEPTILAPKPVESKPTAPQVHTAAKVVPLFRRVGQQVGQYAIAASVAAAVIFGVQQYQ 123 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNG-----QQQQVQEQRRRINAML 177 GQ P PV NT+P+ G +SPVS+ P + + +QQ+QEQR RINA L Sbjct: 124 GQD---GIPTNPVLNTIPVGGSSSPVSVHYPQDGNRASTRQQGLSEQQMQEQRERINAFL 180 Query: 178 QDYELQRRL 186 +D++LQ+RL Sbjct: 181 RDHQLQQRL 189 >UniRef50_A6FDN6 Negative regulator of sigma E activity n=1 Tax=Moritella sp. PE36 RepID=A6FDN6_9GAMM Length = 182 Score = 148 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 15/192 (7%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 ++KE+LS+++D E +D+ LL+EL + + +W+ YH+I D MRG+TP ++ D++ + Sbjct: 2 IEKERLSSIVDNEYIDAALLDELGKDEALASSWQHYHMIGDVMRGETPATVNLDLTRAIT 61 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKV-RPWAAQLTQMGVAACVSLAVIVGVQ 119 AAI EEP F+QKV +PW Q +AA V+L VI GVQ Sbjct: 62 AAIAEEPALIMP---------KESANDSSFYQKVIQPWLKTGGQFAIAASVALMVITGVQ 112 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGV---PSEATANNGQQQQVQEQRRRINAM 176 + N ++ + P N +P G ASPVSL + S ++ EQ RRINA Sbjct: 113 YSNTEAPITGL--EPALNVMPFAGIASPVSLSIESPDSRQVPPEFTDEEKVEQVRRINAF 170 Query: 177 LQDYELQRRLHS 188 + D++LQ+R+ Sbjct: 171 VLDHQLQKRIQQ 182 >UniRef50_B8F4W3 Sigma-E factor negative regulatory protein n=10 Tax=Pasteurellaceae RepID=B8F4W3_HAEPS Length = 209 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 15/208 (7%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 KE LSA MDG + L ++ E+QKTW +YH IR MR + ++L D S+++ A Sbjct: 3 HKETLSAYMDGHKESGDFAETLCNSAELQKTWANYHTIRSVMRSEE-QILGSDFSAKMAA 61 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 +E E + A +P K++ WA L Q G+AA V L + GV Sbjct: 62 LLENEEIEAVAEAQQSEKP-------RGMLLKLKRWATPLMQAGIAASVCLVAVWGVNMM 114 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 N E + Q E PV TLP VS P++ + + ++ Q+RRIN +LQ++E Sbjct: 115 NSSEEVA-QAEQPVLQTLPFSNSVQQVSYNAPAK---DQPTAEHLEYQQRRINVLLQNHE 170 Query: 182 LQRRLHSEQLQF---EQAQTQQAAVQVP 206 LQRR + + E+ + Q +++QVP Sbjct: 171 LQRRTSAGNVTLTEDEKQKAQNSSIQVP 198 >UniRef50_A6D8F8 Negative regulator of sigma E activity (Fragment) n=1 Tax=Vibrio shilonii AK1 RepID=A6D8F8_9VIBR Length = 167 Score = 134 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 8/170 (4%) Query: 33 WESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIP-EAQPAPHQWQKMPFW 91 W +YHLI D MRGD P+ L ++I+ V +A+E EP ++P E+QP P Q +++ Sbjct: 1 WHNYHLIGDVMRGDEPQSLDWNIAESVASALENEPAHTSDIVMPIESQPTPSQAKRL--- 57 Query: 92 QKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPET-PVFNTLPMMGKASPVSL 150 + W Q Q+ VAACVSLAVI+GVQ Y+GQ + E PV T+P G A PVSL Sbjct: 58 --LPAWITQFGQVAVAACVSLAVILGVQQYSGQDPAQPEAEQLPVLQTIPFAGSAEPVSL 115 Query: 151 GVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQ 200 S A + + + VQEQRRRINA+LQDYELQ RL+SE A T+ Sbjct: 116 TRDSVAKS-SNESVNVQEQRRRINALLQDYELQLRLNSEDNASHSADTES 164 >UniRef50_Q15R28 Sigma-E factor negative regulatory protein n=3 Tax=Alteromonadales RepID=Q15R28_PSEA6 Length = 200 Score = 133 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 E LSAL+DGE D +LL+ + ++ E+ W++YHLIRDS+R + ++ DI++ V AA+ Sbjct: 6 ENLSALVDGELHDEQLLDAIKNDAELADKWQNYHLIRDSLRKEMTAQINVDIAANVAAAL 65 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 EP W+ +P V P+A Q QM +AA V++A+I+GVQ YN Sbjct: 66 ASEPAILAP---------KKTWRDLPLVGSVVPFAKQGGQMAIAASVAVAMIIGVQQYNQ 116 Query: 124 QSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQ 183 P + G SPVSL + EQRR INA L D++ Q Sbjct: 117 TDVEQPFNSAPALLG--IQGGLSPVSL-----EQTRTLPRADASEQRRVINAYLNDHKQQ 169 Query: 184 RRLHSEQLQFEQA 196 R + + E Sbjct: 170 LRFKAAPAEGESE 182 >UniRef50_A1SR25 Anti sigma-E protein, RseA n=2 Tax=Psychromonas RepID=A1SR25_PSYIN Length = 177 Score = 131 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 15/186 (8%) Query: 3 KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGD-TPEVLHFDISSRVMA 61 EQLSA++D E +D +L++EL N + Q+ + YHLI D MRGD T + ++FDIS +VMA Sbjct: 5 NEQLSAIVDNEFIDEKLIDELLINKDKQELFSRYHLIGDVMRGDITDQFINFDISQQVMA 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 IE+ P + A + + + + F ++ Q +AA V+ V++ Sbjct: 65 KIEQ-PTKIAAVVELDTPTEKSKNNVISFVKR-------FGQYAIAASVAGVVVLASLVT 116 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + + + V T+P+ G A+PVSL T QQ+V++ R+ A+L D++ Sbjct: 117 SEPTFQNNSAGLEVLKTVPL-GAANPVSL-----QTTKKQSQQEVKKHNDRLEALLNDHQ 170 Query: 182 LQRRLH 187 LQ + Sbjct: 171 LQLQTQ 176 >UniRef50_C4K3Y9 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Y9_HAMD5 Length = 201 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 14/194 (7%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 MQKE+LSAL+D E LD ELL+ L+ + +QK+W++YHLI D++R D L D+S R++ Sbjct: 1 MQKEKLSALIDDEILDDELLHLLSKDKVLQKSWQNYHLIGDALRHDLANPLCLDMSDRIL 60 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I+ +P+ + A +PFWQK+RPW +QLTQ+ VAA VSL V Sbjct: 61 EVIKNDPICINTS--APAIETSRDTDDIPFWQKIRPWVSQLTQIAVAASVSL-----VVV 113 Query: 121 YNGQSETSQQPETPVFNTLPMMG-KASPVSLGVPSEATANNGQQQQVQEQRRRIN----- 174 +G ++S Q E P FN PM+ K +PVS G+ S + G+ +++ Sbjct: 114 LSGHYQSSDQSELPTFNISPMIELKPAPVSFGLHSNVGTHAGKSHHMKKPSEEEQNASEE 173 Query: 175 -AMLQDYELQRRLH 187 +L +EL+RR Sbjct: 174 FNLLHKFELKRRTS 187 >UniRef50_Q3IDL7 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL7_PSEHT Length = 205 Score = 117 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEV-LHFDISSRV 59 + E LSAL+DGE + L + + T+ Y LI D+MR +H DIS RV Sbjct: 9 LDDESLSALLDGE----QQLADAKIAEQDVATFGRYALIGDAMRAQKDHSDIHIDISKRV 64 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+E EPV +AQ AP W + Q+ +AA V++ IVGV Sbjct: 65 ALALESEPVY-ADFSQSKAQSAPQSDTINDNKVVAFNWRKPVAQLAIAASVAMFAIVGVN 123 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 Q + +QQ E P+ T P G ASPVS SE N + + Q++RI A++ + Sbjct: 124 ML-PQGDGAQQSEIPLLQTTPFTGTASPVSYS--SEPALKNAENGLRELQQQRIGALVLE 180 Query: 180 YELQRRL 186 ++ Q R+ Sbjct: 181 HQRQARV 187 >UniRef50_UPI0000E1152A sigma-E factor negative regulatory protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E1152A Length = 195 Score = 112 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 17/202 (8%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAI 63 EQLSA +DGE + + +++ + ++Q+ W+ YHL+ D++RGD + + + A+ Sbjct: 6 EQLSAWVDGEASTTRV-DDVKADVQLQQKWQDYHLMGDTLRGDEVLLTDKSLLESIADAL 64 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNG 123 ++EP + + + +P WQ V Q +Q VAA V+ +I+GVQ+YN Sbjct: 65 DDEPTVLAPST---------KSRVIPIWQNVVSLGKQSSQFAVAAGVAAVMILGVQNYNT 115 Query: 124 QSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQ---QQQVQEQRRRINAMLQDY 180 ++ T G +PVSL Q +Q + EQR+RINA+L D+ Sbjct: 116 EATQP----FMTAPTSGPQGGLAPVSLSQSRTIQTPEQQLNERQALLEQRKRINALLVDH 171 Query: 181 ELQRRLHSEQLQFEQAQTQQAA 202 + Q RL + Q+ + +Q Sbjct: 172 QQQVRLQAAQITTNEQSEKQVN 193 >UniRef50_Q21XN7 Anti sigma-E protein, RseA, Burkholderiaceae specific n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21XN7_RHOFD Length = 214 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 20/212 (9%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPE--VLHFDISS 57 +E +SAL DG+ D + + E + TW +YHL+ D +R P D Sbjct: 9 RELISALADGQLRDEDFARTVEWVNQTEEARLTWHTYHLVGDVLRSGEPVVSARDADFLQ 68 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQM-----GVAACVSL 112 + +++E + PE + W+A + A +S Sbjct: 69 SLKLRLQQETPQVRPVNAPELVANDPGMTVAGVQNGSKYWSANDGRFRWKMLAGLASLST 128 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 ++G Q +G + + +P+ V L P + Q + + Sbjct: 129 VALIGWQIVSGWGDPGGARQ---LVQVPVQALQPEVGLTQPGVGA-----EPQRMIRDPQ 180 Query: 173 INAMLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 ++A+L ++ + Q + A + Sbjct: 181 LDALLAAHKQFGGTSALQG--PAGFLRNATFE 210 >UniRef50_Q47WN9 Sigma-E factor negative regulatory protein RseA n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WN9_COLP3 Length = 233 Score = 109 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 43/230 (18%) Query: 1 MQKEQLSALMDG------ETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFD 54 ++ E +S+L+D +++ + L++ + + + TW++YHLI D +R + P+ L D Sbjct: 4 IKTESISSLVDNYSPSTDDSISAHLVDNMLKDEHLSSTWQNYHLIGDVLRDEVPQSLQLD 63 Query: 55 ISSRVMAAIEEEPVRQPATL----------------------IPEAQPAPHQWQKMPFWQ 92 +S + AAI +E Q F Sbjct: 64 LSETISAAIAQEATILSPNSSMKTSGKNSHLATDENVSINNHSAAQQTNSVVDATNRFKA 123 Query: 93 KVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGV 152 K+ + Q+ +AA + +IVGVQ N ++ S + V T+P+ G A+PVS V Sbjct: 124 KISSLIKPMGQVAIAASAAALMIVGVQ--NNVTDNSIVTPSQVVQTVPLSGYANPVSFNV 181 Query: 153 -------------PSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSE 189 ++ N Q+RR+ A+L+D+ Q +L S Sbjct: 182 QSSQTQQSQQSKQQTQQAMNEQLASDRIAQQRRLQALLKDHNQQVKLGSN 231 >UniRef50_Q5R101 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R101_IDILO Length = 195 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 2 QKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 + E SAL D + ++++ + L + + Q+ W Y +I +++GD + DIS RV Sbjct: 5 KSESTSALFDEQLINADEIEALLQDEQAQQEWHRYSVIHAAIKGDLNSDISLDISERVRV 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 ++ +E P + + W ++ VAA V++ ++ VQ Y Sbjct: 65 SVSQE----------SNVVKPGFGRSKSQNKAASRWFQPFAKVAVAASVAVVAVMTVQTY 114 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + P T P+ G PVSL Q Q++RR++ + L D++ Sbjct: 115 QQPATPDGSSAEPTLLTSPIGGGREPVSLNR-----VEPMSQISDQQRRRQVQSYLIDHQ 169 Query: 182 LQRRLHSEQLQFEQAQTQQAAV 203 Q L + Q E+ + + + Sbjct: 170 QQLMLQQKTEQAEKDEQSEQEL 191 >UniRef50_A4BRY9 Anti sigma-E protein RseA-like n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRY9_9GAMM Length = 213 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 27/223 (12%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSAL+DGE E LL +L + E++ + Y LI D+++ + D+ +RV Sbjct: 6 NEQLSALVDGELRKGETDLLLRQLGRSAELKARFARYCLISDALQRNLSVATGSDLPTRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV- 118 A+E+EP P + R + M +A +LA++ Sbjct: 66 ARALEDEPSYGAEQHRHTRGP------------RGRLLLRPVAGMALAITGALAMVTMWP 113 Query: 119 QHYNGQSETSQQPETP--VFNTLPMMGKASPVSLGVPSEATANN---GQQQQVQEQRRRI 173 Q + + E P P+ + P+ V SE + + Q Q +R+ Sbjct: 114 QQSQKTASVQAEGERPIVAVQETPLQSRLRPIEATVASEHAVPSVAVETAARSQLQWKRL 173 Query: 174 NAMLQDYELQRRLHSEQLQ-FEQAQTQQAAVQVPGIQTLGTQS 215 D +LQ++L ++ E++ T Q +P ++ +G ++ Sbjct: 174 -----DPQLQQQLTDYLIKHSERSATGQMDAALPYMRIIGYEA 211 >UniRef50_A1TLE4 Anti sigma-E protein, RseA n=3 Tax=Comamonadaceae RepID=A1TLE4_ACIAC Length = 207 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 12/208 (5%) Query: 2 QKEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSR 58 +EQLSAL DG ++E A E Q+ W YHLI D +R + + ++ R Sbjct: 7 MREQLSALADGGISEAEWGEAFAYARTAEGQEAWAVYHLIGDVLRSPELARPGNAALADR 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 VMA + E +PEA P + + + A ++ ++G Sbjct: 67 VMAQLAREERPAAEVALPEA-AVPLAAAIQSQGEAANAAVFRWKMVAGLASLAAVGVLGW 125 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 +G + V + + + QV + R++ +L Sbjct: 126 SGLSGGPSAGGETRLAAV------PSRMEVPAATTLVSATDPAGEPQVMLRDPRLDELLA 179 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVP 206 + + LQ + A + P Sbjct: 180 AHRQYG--GASALQMPAGFLRNATFETP 205 >UniRef50_A3Y8F1 RNA polymerase sigma-70 factor n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8F1_9GAMM Length = 215 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 72/212 (33%), Gaps = 22/212 (10%) Query: 4 EQLSALMDGETLDSELLNELAHN-PEMQKTWESYHLIRDSMRGDTPE-VLHFDISSRVMA 61 E LS+L D SE+ L + E Q +SY L + D + D+ SRV Sbjct: 13 ESLSSLFDDHCDASEIDEILEQDAKEWQMKMQSYALTSSVLHSDNHQDFAEMDLVSRVRD 72 Query: 62 AIEE---------EPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112 I + E V QP KV +T + +AA V+ Sbjct: 73 GINKLDNDDASLGENVVALDKFQVPEQPQIATQNNAANEPKVHFLKQAVTGLAMAASVAF 132 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 VI G + E Q P F P +L +P + ++ +R Sbjct: 133 VVIGGGSYLL---EGEPQEAAPAFAQAP--------NLALPIDVKPLQQVNVELNSDNKR 181 Query: 173 INAMLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 + + L+ + Q + + Q A+ V+ Sbjct: 182 LQSYLRQHAEQSTMAAGQGMLPMARVVSYPVE 213 >UniRef50_B9ZJG0 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG0_9GAMM Length = 189 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LSAL+DGET D E L++EL + E + WE YHLI DS+RG Sbjct: 7 KNERLSALVDGETDDFETRRLIDELVKSEEDRNQWERYHLIGDSLRGGLRNTAPAHFMDD 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + A+ +EPV Q ++ W + GVAA V++ +VG+ Sbjct: 67 IRTALADEPVLQGVPR-----------------RESPRWLKPVAGTGVAAAVAMVTLVGM 109 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 Q Q P T G S ++ +A + R L+ Sbjct: 110 QMLGDQPGQDATPVAVESGTPAATGDVQTASSRAGADDSAQTEGGDSL---DPRFARYLE 166 Query: 179 DYELQRRLHSEQL 191 ++ S L Sbjct: 167 NHAELTGPGSSAL 179 >UniRef50_Q2SL39 Sigma factor algU negative regulatory protein MucA n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL39_HAHCH Length = 210 Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 16/201 (7%) Query: 3 KEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 KE +SAL+DGE + E+ LA H+ E+ TW Y +RD + + + H D+ + Sbjct: 6 KESMSALLDGEADELEVRRILAQSHDEEVMATWSRYQRVRDELHEEAAQWAHVDLRQGIW 65 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 +A+E+E + + E + AP + + W + AA + V + G Sbjct: 66 SALEKEEGVDRSESVVEGEVAPEEARVGGGWWRGVAVAASVAFAAV----FMVEFSG--- 118 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ---EQRRRINAML 177 S QP V + + + G A ++ + + E R+NA L Sbjct: 119 ----GPGSTQPAPAVASGQQIAPSLNVNGAGSHLVADSSAESEDAIPFSAEHASRLNAYL 174 Query: 178 QDYELQRRLHSEQLQFEQAQT 198 + Q L+ Q+ A+ Sbjct: 175 MKHAEQAALNGSQVISPYARL 195 >UniRef50_Q1N1C2 Anti-sigma factor MucA n=1 Tax=Bermanella marisrubri RepID=Q1N1C2_9GAMM Length = 192 Score = 99.1 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 26/200 (13%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LS+LMDGE + LL ++ NPE++ W YHL +D ++G + E D+S V Sbjct: 7 ESLSSLMDGEADEMSVHRLLGKVDKNPELKAKWSRYHLAQDILKGQSSEHSELDVSGLVS 66 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 +AI E + RPW + M +AA V+ AV+VG Q Sbjct: 67 SAIAGESTPKSE----------------------RPWLKAIGGMSIAASVAFAVVVGTQ- 103 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 + + + ++ A V +++ ++++++ + R+N L+ + Sbjct: 104 FALPGAQDSSFQVASKPSEEIVKPADVVRSETMIAQQSDSLNEEELRQAQNRLNDYLKQH 163 Query: 181 ELQRRLHSEQLQFEQAQTQQ 200 L Q A+ Sbjct: 164 AQDSALGQGQTAMPFARVVN 183 >UniRef50_A0YCK7 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK7_9GAMM Length = 225 Score = 98.0 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 20/217 (9%) Query: 3 KEQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMR-GDTPEVLHFDISSRV 59 +E +SALMDGE + EL + ++ ++ TW YHL+R+ M+ DT H DISS+V Sbjct: 6 RESISALMDGEADELELRRIMSTDNDESVRSTWARYHLVREVMQDNDTGAYRHLDISSQV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AI R I + + Q + QK W + VAA V++AVIVGVQ Sbjct: 66 SMAIGHNNGRLSEEKIDQLESVVAQ-KVSDDQQKTIVWWRPMAGFAVAASVAMAVIVGVQ 124 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAT----------------ANNGQQ 163 + + PV + PM + PV+ + + Sbjct: 125 TLETNATSELASGFPVASKAPMTSRVYPVAGASMQASGGASNAVRYQSSELPGDIAASRA 184 Query: 164 QQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQ 200 E R R+ + + + L++ Q A+ Sbjct: 185 AADLEARHRLERYMLRHTERAVLNNGQGMISFARVAS 221 >UniRef50_B7RX55 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX55_9GAMM Length = 199 Score = 96.8 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 15/200 (7%) Query: 3 KEQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSALMD E + EL L + E++ TW Y+ M G + DISSRV Sbjct: 6 RESLSALMDNEANELELQRLLKQVGSDAELRATWARYNAASAVMSGQDVSHMQLDISSRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AAIE E TL + Q LA I G + Sbjct: 66 RAAIEVESGVTRETLKQRLFRPIASFAVAASVAATVVIGGQQ----------LAQIGGAE 115 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE-QRRRINAMLQ 178 Y+G + +PV + S G + + +E R+R+ +Q Sbjct: 116 PYSG-GPVAASGASPVGLVNSLGATTVQASYGTEAIPVLQPAARTAYKELARQRMQMYMQ 174 Query: 179 DYELQRRLHSEQLQFEQAQT 198 ++ L+S A+ Sbjct: 175 EHAEHSALNSPHGLIPFARV 194 >UniRef50_A1U2X1 Anti sigma-E protein, RseA n=3 Tax=Marinobacter RepID=A1U2X1_MARAV Length = 188 Score = 94.1 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 26/203 (12%) Query: 3 KEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 +E LS++MD E + + L+H +++ W+ + IRD M D++ V Sbjct: 6 RETLSSMMDDEADELSVRRLLSHGNQEDVRGQWQRWQQIRDLMHEQHGPADGIDVAGAVR 65 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++ E +P + ++ W+ VAA V +A+IVG Sbjct: 66 EALD-------GHARSEQARSPVEVPRVSVWR-----------WPVAAMVFMALIVGFGA 107 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE-QRRRINAMLQD 179 G + P + G A P + GV A Q++ E Q R++ L + Sbjct: 108 GAGWDTRTGVPVQALA-----GGSAEPSASGVTLSAAVEEVALQRLDEDQLRQMRQYLLE 162 Query: 180 YELQRRLHSEQLQFEQAQTQQAA 202 + + + + A+ A+ Sbjct: 163 HAQHNSVGAGRGSVGYARLVSAS 185 >UniRef50_C7RA49 Anti sigma-E protein, RseA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA49_KANKD Length = 232 Score = 93.7 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 18/206 (8%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + K+ +SA +D E + A E + W YHLI MR D + L DISSR+ Sbjct: 15 LDKQSVSACVDSELEAFATESSFAFESEEMQLWSRYHLIGQVMR-DEAQHLDMDISSRIN 73 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I++EPV + P++ QL +AA V+L V+ V Sbjct: 74 EQIDKEPVYTASPTKPKSNVIRFPTNP----------FKQLAGYAIAASVALVVLFNV-- 121 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 T Q ++ + S S + T + +++ + I+ M + Sbjct: 122 -----GTQSQVDSQATTLAAVSNTNSQASGNAMTTNTQASNLSMAERQELQTIHDMFLKH 176 Query: 181 ELQRRLHSEQLQFEQAQTQQAAVQVP 206 E + + V VP Sbjct: 177 ESLSHSSLLPSVQVVSNQKVIPVSVP 202 >UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ05_9GAMM Length = 251 Score = 93.0 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 65/175 (37%), Gaps = 9/175 (5%) Query: 21 NELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQP 80 E+ PE+ + W+ YHLIR MR D DISS+VMAA++ EP Q + Q Sbjct: 1 REMDGEPELAEAWQRYHLIRSVMRNDEVAEPKLDISSQVMAALDAEPAFQVESETQSQQR 60 Query: 81 APHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY-NGQSETSQQPETPVFNTL 139 + + FW L M AA V+ VI+GVQ+ G Sbjct: 61 SDQDTSRFQFW-------KPLASMAAAASVTAMVILGVQNVEQGNQTIVDNRPAYTLPAN 113 Query: 140 PMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFE 194 + G G NGQ+ ++ + I + +E Q Sbjct: 114 SVSGDIVRAQFG-NRNMIVENGQEPEIIRLSQGIERYIDQHEHMLSEKQSNWQAS 167 >UniRef50_Q1YS36 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS36_9GAMM Length = 222 Score = 91.8 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 50/224 (22%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + LSALMDGE D EL L E++ E++ W+ YH++ +++GD + D S+ + Sbjct: 10 QSLSALMDGEATDMELHRLLKEVSEGSELRDKWKRYHMVSSALKGDA-AITPIDYSAAIS 68 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI+EE + + L + + +AA V+L ++GVQ Sbjct: 69 AAIDEESSHRQSVLA--------------------GFVGSAGRFAIAASVALVAVLGVQQ 108 Query: 121 YNGQ----------SETSQQPETPVFNTLPMMGKASP------VSLGVPSEATANNGQQQ 164 N + Q E V + P VS G ++++ Sbjct: 109 LNSPLDSVAPVSEFAGIEQVDEENVGPAIQFPSGFQPIINARTVSAGGNNKSSQFVTPVI 168 Query: 165 QVQEQRRR----------INAMLQDYELQRRLHSEQLQFEQAQT 198 +V++Q R +N ++ + L+S Q A+ Sbjct: 169 EVRQQAERNYSEAQLRAYMNDVMARHSNHAALNSNQGMLPFARL 212 >UniRef50_Q3J8C8 Anti sigma-E protein RseA-like n=2 Tax=Nitrosococcus oceani RepID=Q3J8C8_NITOC Length = 195 Score = 91.4 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 24/206 (11%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSALMDGE E+ L E+++ WE+YHL+RDS++G P +D++ RV Sbjct: 11 NEQLSALMDGELPSEEIQSVLQAFKTQEEVRRRWENYHLVRDSLQGHLPGASRYDLARRV 70 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 ++ EP L+ E +++ + A + S ++G+Q Sbjct: 71 SQILDNEP----PLLLAEKHRGTDISRQLRQKWRYGAGLALAASL------SAVAVLGIQ 120 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 + ++ + TLP+ +SP + + + V+E R+N L + Sbjct: 121 SL---ASKPLISQSQIATTLPV--SSSPEIAPLQKNSRHWAVLEPDVKE---RLNTYLVN 172 Query: 180 YELQRRLHSEQLQFEQAQTQQAAVQV 205 + + + Sbjct: 173 HTEYVDM---PGMLRYGRIVSYESSR 195 >UniRef50_Q5P0C8 Anti sigma-E protein n=3 Tax=Rhodocyclaceae RepID=Q5P0C8_AZOSE Length = 190 Score = 90.7 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 75/205 (36%), Gaps = 28/205 (13%) Query: 1 MQKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 + K++LSAL+DG+ + + + + + ++ WE+Y LI D +RGD + + Sbjct: 3 LMKDKLSALLDGDLDEQAMSPVFDSIRRDRSLRSDWETYCLIGDVLRGDRNTSPG--LVA 60 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 RVMA IE EP A P Q + M +AA + +VG Sbjct: 61 RVMAGIEAEPTVLAPPASGSASAPPGAAQPRAGR----------SLMPLAASIMGVAVVG 110 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAML 177 Y + +PE V G + + VP ATA + Q R L Sbjct: 111 WVAYTLNA----EPEGDVRTASAASGLQAVEKVSVPGGATAPSP-------QVDRQREYL 159 Query: 178 QDYELQRRLHSEQLQFEQAQTQQAA 202 + Q L + + Sbjct: 160 FAH--QAMTSGGPLSGVIQHVRTVS 182 >UniRef50_C5CSE9 Anti sigma-E protein, RseA n=4 Tax=Comamonadaceae RepID=C5CSE9_VARPS Length = 222 Score = 90.7 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 21/219 (9%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEV--LHFDISS 57 +EQ+SA DG E ++ + + + W +YHL+ D +R + Sbjct: 8 REQVSAFADGHLHGEEFARAIDAVCAEEDARGAWRAYHLVGDILRSGAHSPCSDSNAFLA 67 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAAC-VSLAVIV 116 R + EP +P A+PA ++ + +L + AA V++A I Sbjct: 68 RFQQRLAAEPAIAAPARVPAAEPAVLTARRRAEAANEPVFRWKL--VAGAASLVAVAAIS 125 Query: 117 GVQHYNGQSETSQ---------QPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ 167 NG S QP P + + QV Sbjct: 126 WTLVGNGIGVPSPGAQIAAAQPQPAANSVLAAAAANSQLPPTAALTPTRVMVGNGSPQVM 185 Query: 168 EQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVP 206 + R++ +L+ ++ Q + A + P Sbjct: 186 LRDPRLDQLLEAHQQ----AGGASQMPSGFLRNATFEGP 220 >UniRef50_C5SBU3 Anti sigma-E protein, RseA n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU3_CHRVI Length = 183 Score = 89.9 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 35/205 (17%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +++LSAL DGE ++ LL+ LA + E+++ WE Y LI ++RG+ + ++ RV Sbjct: 6 RQRLSALQDGELAPAQVPALLDALAADTELRECWERYTLIGQAIRGEAIDPNARALADRV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+ EP P +PAP R W + T + +AA V L ++ Sbjct: 66 RNALAAEPTILCP---PRQKPAP------------RRWTGRYTGLALAASVLLVTVL--- 107 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKAS-PVSLGVPSEATANNGQQQ-QVQEQRRRINAML 177 TPVF P+ A PV+ + T + + +++ L Sbjct: 108 ------------ATPVFVGDPVTQTAVGPVAARLVERQTIPLQRWHLEHPGLASKLDRYL 155 Query: 178 QDYELQRRLHSEQLQFEQAQTQQAA 202 ++ + A Sbjct: 156 VTHQATAPATGAKGLLPYAMLVGYE 180 >UniRef50_A1WT22 Anti sigma-E protein, RseA n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT22_HALHL Length = 226 Score = 89.9 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 40/224 (17%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 EQLSAL+D E + L+ L H+ E + Y L+RD+++ + P D+ RV Sbjct: 12 EQLSALVDDELPREQRAFLMRRLDHDAEARGRLARYFLMRDALQRNLPPQPSTDLVERVR 71 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A + EP + W +AA V+ + Q Sbjct: 72 AELASEPAYDARRDAARQAASRD-------------WRRPAFGGLIAASVAAMTVFWWQG 118 Query: 121 YNGQS-----------ETSQQPETPVFNTLPMMG-KASPVSLG------------VPSEA 156 +++ E+P + G PV+LG + Sbjct: 119 GAPPGAGTEPTAGGGEPSTEVAESPAGGERAVGGTTVRPVTLGDSGGLPWPGTDRATAGT 178 Query: 157 TANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQ 200 + + + R++ + D+ Q Q + Q Sbjct: 179 SGESAVEPVPDAMPSRLHRFMIDHAEQAESDYPGSMLHQVRVPQ 222 >UniRef50_B3PJA0 MucA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJA0_CELJU Length = 231 Score = 89.9 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 45/227 (19%) Query: 4 EQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSALMD + + EL+ L + E++ TW Y L S+R D P + D +SRV Sbjct: 12 ESLSALMDNQASELELMRLLKAAGSDAELKSTWARYQLASASLRQDLPTLADMDFASRVS 71 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AA+ +EP + PW QL ++ VAA V+ AVI+GVQ Sbjct: 72 AALVDEPAH-------------SSAVNQAAAAQSLPWWQQLGRVAVAASVAGAVILGVQQ 118 Query: 121 YNGQS------ETSQQPETPVFNTLPMMGKASPVSLGVPS----EATANNGQQQQVQEQR 170 Y + P TPV NT + P + P+ +G + + QE R Sbjct: 119 YQQTQLPEAGIAGTNTPATPVVNTPAVNPPDLPSGINAPALSARTVAVQSGYENRPQESR 178 Query: 171 RRI-------------------NAMLQDYELQRRLHSEQLQFEQAQT 198 R + N +++++ L+S Q + Sbjct: 179 RVMFVPRQEAAPIYNEDVSVYVNQLIEEHSGNAALNSGQGMLPFTRV 225 >UniRef50_C0N4S2 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S2_9GAMM Length = 186 Score = 89.5 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 28/206 (13%) Query: 2 QKEQLSALMDGETLD---SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 Q+E LSA +DGE ELL + + + + + Y L D + G D++ R Sbjct: 6 QRELLSAFVDGELNKQEIDELLALMETDKDAKTEFMRYQLSSDVIHGYKSYSTPVDLTQR 65 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + AA+ +E + + A FW++ AA + +VGV Sbjct: 66 ISAALTDEKAH--SVEATDMPKAKVFALPNWFWKQTAGLAAAASIG-------ALAVVGV 116 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 + S + Q E + S +Q+V+ R+N L Sbjct: 117 MNQPQTSLSPQLAEIDSVQQQGL----------THSATNRWTVGEQEVE---DRLNNYLV 163 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQ 204 D+ F A+ + Sbjct: 164 DHNEYA---GASGLFSYARVVSYGEE 186 >UniRef50_P38107 Sigma factor algU negative regulatory protein n=32 Tax=Pseudomonadaceae RepID=MUCA_PSEAE Length = 194 Score = 88.7 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 30/206 (14%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSA+MD E + EL LA + E++ TW Y L R M + P + DI++ V Sbjct: 7 QETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHRE-PTLPKLDIAAAV 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 AA+ +E A P + ++ VAA V+LAV+ GV+ Sbjct: 66 SAALADEAAPPKAEKGP---------------------WRMVGRLAVAASVTLAVLAGVR 104 Query: 120 HYNGQ---SETSQQPETPVFNTLPMMGKASPVSLGVPSE--ATANNGQQQQVQEQRRRIN 174 YN + +QQ TP + G A N + +R+ Sbjct: 105 LYNQNDALPQMAQQGTTPQIALPQVKGPAVLAGYSEEQGAPQVITNSSSSDTRWHEQRLP 164 Query: 175 AMLQDYELQRRLHSEQLQFEQAQTQQ 200 L+ + Q + + A+ Sbjct: 165 IYLRQHVQQSAVSGTESALPYARAAS 190 >UniRef50_A9BNK0 Anti sigma-E protein, RseA n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BNK0_DELAS Length = 238 Score = 88.7 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 76/226 (33%), Gaps = 25/226 (11%) Query: 2 QKEQLSALMDGETLDSELLNELA--HNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSR 58 ++EQLSAL DGE +EL LA + Q+ W YHL+ D +R + D+ S Sbjct: 7 KREQLSALADGELSAAELQAVLAYAESDAGQQEWRMYHLVGDVLRSPELAHHSRHDVLSG 66 Query: 59 VMAAIEEEPVRQPATLIPEAQPA---PHQWQKMPFWQKVRPWAAQ----LTQMGVAACVS 111 + A + EP R ++ E P Q + + +R A A V+ Sbjct: 67 IRAQLANEPRRPLVSVATEELAQIAHPAQDRAVINGAPLRDAANASVFRWKMAAGFASVA 126 Query: 112 LAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLG-------------VPSEATA 158 +G G L ++PV++ S Sbjct: 127 AVAAIGWSVMLGAPAGPGAAPGRALAALETGAPSAPVAVAGNAQDFPLGDTAQSSSVVAV 186 Query: 159 NNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 Q V + R++A+L + LQ + + A Sbjct: 187 AGSYGQSVMLRDPRLDALLASHPQYS--GPATLQMPASFLRNANFA 230 >UniRef50_UPI0001699368 sigma-E factor negative regulatory protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699368 Length = 113 Score = 88.3 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 18/122 (14%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E++SAL+D E + E+ + L P Q+ W YHLI D+MR + ++ D++S + Sbjct: 6 REKVSALVDDELSEHEISRHIGRLLETPSEQQAWARYHLIGDAMRQELGSLVQPDLASAI 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A++E EP ++ W + +AA V+L + V Sbjct: 66 SASLEREPTIIAPGMVKRRPA---------------SWLKPVAGTAIAASVALVAVTMVP 110 Query: 120 HY 121 Sbjct: 111 QL 112 >UniRef50_B5JX07 Anti sigma-E protein RseA, N-terminal domain n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX07_9GAMM Length = 224 Score = 88.0 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 62/219 (28%), Gaps = 18/219 (8%) Query: 2 QKEQLSALMDGETLDSEL-LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E +SAL DGE+ E ++ L + Q W H +RD D + RVM Sbjct: 3 HNEWVSALADGESEQLERDIDRLLDSESAQAVWADIHQLRDQCDPKIQRKASPDFAGRVM 62 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 +A+E EP T + A + Q +RP A VAA + Sbjct: 63 SALESEPTILAPTGVSNRPSAKESAAVVALPQWMRPVAGLAVAASVAAVTVIGFDNWSAS 122 Query: 121 YNGQSETSQQPET--PVFNTLPMMGKASPVSLGV----PSEATANNGQQQQVQEQRRR-- 172 P V P + G Q +Q Q R Sbjct: 123 PATLDAGPTTPSLLNGVAVAPAANRAVRPAAYGSLAQISPVQLTGTYQPSLMQWQGERAA 182 Query: 173 ---------INAMLQDYELQRRLHSEQLQFEQAQTQQAA 202 +N L ++ + Q + Sbjct: 183 RVESLNQAQLNQYLANHSEYSDTSNYQGILPYTRLVGYD 221 >UniRef50_C6ME50 Anti sigma-E protein, RseA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6ME50_9PROT Length = 182 Score = 88.0 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 26/154 (16%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 K ++SALMDGE + ++ + + ++Q W SYHLI D++R L +ISSR Sbjct: 1 MKSKVSALMDGELDQQDVTHIIEAIRKDNDLQNEWRSYHLIGDTLRK--SSRLSMNISSR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V + EP + + Q ++ + + AA V + G+ Sbjct: 59 VSQKLITEPTVLSSNVTTAIQKQKYK----------------VFTLAAAASVVAMISAGL 102 Query: 119 QHYNGQSE-----TSQQPETPVFNTLPMMGKASP 147 N Q + P+M + P Sbjct: 103 IMNNLYKPQQIMIAEQSSQENSLTAAPIMVSSPP 136 >UniRef50_C9Y9K3 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9K3_9BURK Length = 198 Score = 87.2 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 33/213 (15%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDIS--S 57 +EQ++AL DGE + LL+ + P + W +H + S+RG+ E D++ Sbjct: 10 QEQIAALADGELSADDIGTLLDAMEAEPATYEAWAVHHAVVASVRGERVEAPSGDLAFWQ 69 Query: 58 RVMAAIEEE---PVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAV 114 + + +E PV +P FW KVR A+ + + V LA Sbjct: 70 TLQKRLAQESDGPVFHNEIQVPNPVIVASSASNESFW-KVRALASFVMVLAVGG---LAA 125 Query: 115 IVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRIN 174 ++ Q E+ + P A+ V+ V + ++ Sbjct: 126 VLWPQ--------GDPSESFALSGTPAAPVATEVA-----------TADGSVMLRNPELD 166 Query: 175 AMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPG 207 A++ ++ Q + A + PG Sbjct: 167 ALMAAHQQ--MGGHSAWQAPSGFLRNATYERPG 197 >UniRef50_B8GPK3 Anti sigma-E protein, RseA n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK3_THISH Length = 196 Score = 86.8 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 66/209 (31%), Gaps = 21/209 (10%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 + E+LS L+D E E L++EL +PE W YHLI D++RG D +SR Sbjct: 5 KNERLSTLVDDEADSFEVRRLVDELGKHPEDLAQWGRYHLIGDAIRGGLNRSAPPDFASR 64 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A IE+EP + +G G Sbjct: 65 VSALIEQEPALTGVPQQVGRGLLKPVAGVAMAASVAVAVLVGVMNVG-----------GT 113 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 +++P + G+ S +++ R+N+ + Sbjct: 114 PETMPAPALAERPVSAPLAMQVAEGERQLASGNAQR--VREASGFSRLETPDARLNSFIV 171 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVPG 207 ++ Q + + PG Sbjct: 172 NHAEHA---GGQGLMPYVRVV--GFETPG 195 >UniRef50_A4A3V2 Anti sigma-E protein RseA family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V2_9GAMM Length = 203 Score = 86.8 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 74/205 (36%), Gaps = 31/205 (15%) Query: 4 EQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSAL D E + EL L +L +PE++ W H+ R ++ G+T D + V Sbjct: 15 ETLSALADDEAQELELRRVLRDLDGSPELRARWYRLHVARTALSGETVRP-SVDFAGSVR 73 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI+ EP + + W L VAA V+ V++G Q Sbjct: 74 AAIDAEPALEQGSS--------------------GNWRRTLGSFAVAASVATVVVLGGQQ 113 Query: 121 YNGQSETSQ------QPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE-QRRRI 173 S S PV S G + T + +E R+R+ Sbjct: 114 LAATSSNSDRDLVARVAPLPVGVVNTTGAVPVRASFGTRAVPTLEPADRTAYRELARQRL 173 Query: 174 NAMLQDYELQRRLHSEQLQFEQAQT 198 Q++ L++ Q A+ Sbjct: 174 RRYSQEHAEHASLNTPQGMLPFARV 198 >UniRef50_C5BRM9 Anti sigma factor domain containing protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRM9_TERTT Length = 247 Score = 86.0 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 33/200 (16%) Query: 4 EQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E +SAL+D + + +L L + + W+ YH I +MR + D+S+ + Sbjct: 18 ESISALVDNQGNELDLARVLKASDSDVHARSQWQRYHQISATMRSEDTSFAAIDLSAGIR 77 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 AAI E + + R W L + +AA V++ +VGVQ Sbjct: 78 AAIASEQTLAGQPQVATS----------------RSWLHLLGKTSIAATVAVGFLVGVQQ 121 Query: 121 YNGQSET---SQQPETPVFNTLPMMGKASPVSLGVP----------SEATANNGQQQQVQ 167 E F + P P T + Q+Q Sbjct: 122 LGQSPNAVNDGAIAEAEPFQAPDLNSAVIPAGFDSPQLSARTVSTGPSNTVYSSPSAQIQ 181 Query: 168 -EQRRRINAMLQDYELQRRL 186 +R + + D +LQ Sbjct: 182 GLPSQRPDTFISDPQLQAHF 201 >UniRef50_C6WX95 Anti sigma-E protein, RseA n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX95_METML Length = 163 Score = 86.0 bits (211), Expect = 8e-16, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 14/164 (8%) Query: 2 QKEQLSALMDGET---LDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 EQ+SALMD E L+ + + + +TW YHLI D+MRGD L + Sbjct: 1 MSEQISALMDDEIAVEDAEHLIASIHTSRQASQTWHQYHLIGDAMRGD--VALGASFKQK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M IE+EP + ++ H+ K+ +AA + ++VG Sbjct: 59 LMQRIEQEPTVLAPSA---SKVTAHKKTTAVLKDKLP------ASWSIAASFAAVMVVGW 109 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQ 162 Q+E + V L + Sbjct: 110 LALQQQTEPNPAAALEVAQVTTTSESIPNEYLMAHQSLAPSTSS 153 >UniRef50_C5V4B7 Anti sigma-E protein, RseA n=2 Tax=Gallionellaceae RepID=C5V4B7_9PROT Length = 167 Score = 85.3 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 63/207 (30%), Gaps = 47/207 (22%) Query: 1 MQKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 M K ++SALMDGE + E +L ++ P Q W YH+I D +R PE +H DIS+ Sbjct: 1 MMKHEISALMDGELFEDEADSVLGQIKREPAAQSDWAVYHMIGDVLRQ--PEYVHRDISA 58 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 V ++ EP Q A +V Sbjct: 59 IVRERLQNEPTILAPRSRALKQKARVFALSAAASLLA------------------VGVVS 100 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAML 177 ET+ Q N P+ + P S N L Sbjct: 101 WMSLQISPETAPQMAMQQSNIRPVNMQIQPKS------------------------NDYL 136 Query: 178 QDYELQRRLHSEQLQFEQAQTQQAAVQ 204 ++ + +T + + Sbjct: 137 MAHQEFSPSNDMNGGASYIRTVTFSPE 163 >UniRef50_A3WPR2 Negative regulator of sigma E activity n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR2_9GAMM Length = 210 Score = 85.3 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 5/205 (2%) Query: 4 EQLSALMDGETL--DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 E S+L D E D + + E W Y +IR +M+G+ DIS+ V A Sbjct: 5 ESWSSLFDSELDVLDQADFDAQLEDAEQSDRWYRYGVIRSAMKGELNHNGPLDISAAVAA 64 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 ++ P A A + + W L ++ VAA V+ +V VQ Y Sbjct: 65 EVDAMPSANNAVDSDNVVQAHTSSRSAAARKAALRWFNPLAKVAVAAGVAAVALVTVQTY 124 Query: 122 NGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYE 181 + S E P T PM G PVS P+ A + + Q+ Q RR+ + + D++ Sbjct: 125 QTPMDASGV-EQPSILTNPM-GAREPVSFS-PNAAPSASAQKAIEQSMRRQAQSYMIDHQ 181 Query: 182 LQRRLHSEQLQFEQAQTQQAAVQVP 206 Q + S + + T+ Q P Sbjct: 182 QQLMMLSSEAANNEETTETNNQQDP 206 >UniRef50_Q0VP12 Sigma factor algU negative regulatory protein AlgS n=2 Tax=Alcanivorax RepID=Q0VP12_ALCBS Length = 194 Score = 84.9 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 22/203 (10%) Query: 4 EQLSALMDGETLDSELLNELAH-NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 E LSA +D ET + E + + T + L RD M + D ++R+ AA Sbjct: 6 EALSAFLDDETSELEARRVMRDIDDGDLDTLARWQLARDVMHHQPTMAVPADFNARLSAA 65 Query: 63 IEEE--PVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 + +E PV++PA L A+ A + W G Q Sbjct: 66 LADEALPVQRPAWLGGMARLAVAASVAAATVVGWQTWE------------------GSQA 107 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 NG + + P G+ S VS + A V + R+N ML + Sbjct: 108 ANGTAAPVMAAAADNRVSRPF-GETSLVSQAFMASNNAVVVPASAVPAAQPRVNNMLLRH 166 Query: 181 ELQRRLHSEQLQFEQAQTQQAAV 203 HS Q A+ Sbjct: 167 SDFAARHSGQGMMPFARLVSMDA 189 >UniRef50_A2SDG6 Putative transmembrane sigma-E factor negative regulatory transcription regulator protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDG6_METPP Length = 214 Score = 82.2 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 20/208 (9%) Query: 4 EQLSALMDGETLD---SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFD--ISSR 58 E LSAL+DGE + L +++ W SY LI D +R + D R Sbjct: 11 EALSALVDGEADAGTAASLSARWRDEAALRERWHSYQLIGDVLRSEELAGGGRDAAFLQR 70 Query: 59 VMAAIEEEPVRQPA-TLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 + A ++ EPV + A ++ +R WA A V+ + Sbjct: 71 LRAQLDREPVVLAPRADRVAEESAAALPRQRAAGGGLRRWATP-------AAVAAGFLAV 123 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASP--VSLGVPSEATANNGQQQQVQEQRRRINA 175 + + Q + P P++ +P V L P++ V + R++ Sbjct: 124 IGSLAVTRLSGPQADAPQLAQAPVVPAEAPQRVVLSAPADQVEPASG---VLIRDARLDQ 180 Query: 176 MLQDYELQRRLHSEQLQFEQAQTQQAAV 203 L ++ S L + A Sbjct: 181 YLAAHKQFG--GSSALSVPSGFLRSATY 206 >UniRef50_Q0A8Z8 Anti sigma-E protein, RseA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z8_ALHEH Length = 243 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 EQLSAL DGE EL L L +PE + Y+L RD ++ T E + ++ RV Sbjct: 10 SEQLSALADGELSREELPLLLARLDESPERRARLARYYLARDGLQRATGEGIDLGLADRV 69 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+ +EP + P +P P + + +AA V+L ++ Sbjct: 70 RDALRDEPAHR-----PSRRPLPGSH-----------YLRPAAGLALAASVALVGVLVWP 113 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASP 147 + + + SP Sbjct: 114 GAGVDEGGVPVAQDGAGAQVAALPDVSP 141 >UniRef50_C6X6N8 Anti sigma-E protein, RseA n=2 Tax=Methylophilaceae RepID=C6X6N8_METSD Length = 151 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 24/140 (17%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 K+Q+SAL+D E + L + + + +W +YHLI D MRG + D++ R Sbjct: 1 MKDQVSALVDEELSLEDSEYLYTAIRSSETLSDSWTTYHLIGDCMRG--SPIFKADLTDR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M +E+EPV P T VAA V+ + VG Sbjct: 59 IMQQLEQEPVVLAPKAKKAVYKTP-------------------TLWSVAASVAAVMFVGW 99 Query: 119 QHYNGQSETSQQPETPVFNT 138 Q +T + Sbjct: 100 MVLQQQVQTHGEAAPAEIAQ 119 >UniRef50_Q21IG9 Anti sigma-E protein RseA-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IG9_SACD2 Length = 224 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 19/218 (8%) Query: 3 KEQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 E LSAL+DGE+ + +L L + E+++TW Y LI MR D DIS+ V Sbjct: 10 NESLSALVDGESNELDLRRVLKQSAADDELRETWRRYQLIGAVMRNDKDVAPSIDISAGV 69 Query: 60 MAAIEEEPVRQPATLIPE--------AQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVS 111 MAAI +EP A+ + + Q + +A + Sbjct: 70 MAAIADEPAPSVASTSKVKTWLEGMGKASIAAAVAVGVLVGVQQLPSEQTGEELMAGSDA 129 Query: 112 LAVIVGVQHYNGQSETSQQPETPVFNT-----LPMMGKASPVSLGVPSEATANNGQQQQV 166 + ++ V P + P +PS + ++ Sbjct: 130 AVPAAVNANVPDWFQSQPLSARTVSGAGETHSAPAAYASYPRGSELPSVNISRLSSDPEL 189 Query: 167 QEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 + +N ML+ + + + A+ + Sbjct: 190 EA---YLNRMLEKHAQKAAAENGIKMVPLARASSVEGE 224 >UniRef50_Q2Y877 Anti sigma-E protein, RseA, Burkholderiaceae specific n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y877_NITMU Length = 188 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 +E++SALMDGE + ++ + + E+++ W +YHLI D++ EV DI+ R Sbjct: 1 MQEKISALMDGELDAGDASAMIEQFKNAEELREYWIAYHLISDAL--GQSEVKPLDITRR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EP + PAP + + A ++ G Sbjct: 59 VNARLVAEPAVFAVSSTTLPYPAPKRRPRAYAAAASIAAA---------------MVGGW 103 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 E + N A+ V + E + IN L Sbjct: 104 IILQTTQEPDLLRQNLADNRTSPSTSAATTLAPVATYPAIPAKASIAASESAQ-INDYLL 162 Query: 179 DYELQRRLHSEQLQFEQAQT 198 ++ + +T Sbjct: 163 AHQQFSPSTTMHGAIPFMRT 182 >UniRef50_Q1QX28 Negative regulator of sigma E activity-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX28_CHRSD Length = 263 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 3 KEQLSALMDGETLDSELLNELAH---NPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E SALMD E D E+ L +PE TW YHL R M+ D + D+S+ + Sbjct: 6 RESFSALMDNEGDDLEIRRALKALQGSPEEADTWRRYHLARSMMQRDRDVDVTTDLSAGI 65 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 MA + +EP P+ PAP ++ + VAA VSL VI GVQ Sbjct: 66 MARLADEPA-------PQEAPAPSTSRRAAP-------FSFAGSAAVAAAVSLMVITGVQ 111 Query: 120 HYNGQSETSQQ-PETPVFNTLPMMGKASPVSLGVPSEA 156 YN + + E + +P G A + S Sbjct: 112 VYNANAPGDGEGAEFASSDAVPGQGGADAQRASLTSAP 149 >UniRef50_UPI0000E87AE2 anti sigma-E protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE2 Length = 154 Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 18/151 (11%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 E++S+L D E L ++ L+ +Q+ W+ Y ++RD ++ + D+S+R Sbjct: 1 MSEKISSLFDNEVEQESLDKEVSALSAKSAVQRNWKYYQVVRDVLQNNYSS--SPDLSAR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 +M AI++EP + A P Q V PW +GV A + + + Sbjct: 59 IMEAIDKEPTQMGAIR-------PKQNTASALVLPVMPWKIAAYTLGVFAAIGIFTMNIP 111 Query: 119 QHYNGQSETSQQPETPV------FNTLPMMG 143 N + Q + P F T + G Sbjct: 112 TISNESTVQLVQEDIPAEFMKKHFATTALNG 142 >UniRef50_D2U9S3 Putative regulatory protein n=1 Tax=Xanthomonas albilineans RepID=D2U9S3_XANAL Length = 317 Score = 79.5 bits (194), Expect = 7e-14, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++QLSAL+DGE E +L L H+ E+ E + L + +RG D S+RV Sbjct: 27 RQQLSALIDGELPADEARFVLRRLQHDEELAGCHERWQLCGEILRGRVSVPAPADFSARV 86 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A+ E +Q Q +++ R W + +AA V+ + + Sbjct: 87 REAVAAEASQQV------------QARRLGAAGNRRTW-RWGGGVALAASVAGLALFVTR 133 Query: 120 HYNGQSETSQQP-ETPVFNTLPMMGKASPVSLGVPSEATANNGQQ 163 ++ S P + T ASP L P + Sbjct: 134 ERLPEAPASVPPTQVASATTQTSASAASPARLPAPRPTPVDPQSD 178 >UniRef50_B9Z3B0 Anti sigma-E protein, RseA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B0_9NEIS Length = 167 Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 38/184 (20%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE LSAL+D E E L++ + + +++ W+ YHLI D+MR + ++ R Sbjct: 1 MKESLSALVDNELDGPEASKLISAASTDESLKEAWDEYHLIGDAMR--ASGLNSINVRHR 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EEP + + + +AA +S A +V Sbjct: 59 VAARLAEEPTVLAPRR-----------------WLRQGSVRTVGAVALAASMSFAAVVAW 101 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 Q G A GVP + + + L Sbjct: 102 QQLAVNG----------------QGAAMVAEKGVPVQVAQQVEPANGPMARDNGADPYLL 145 Query: 179 DYEL 182 ++ Sbjct: 146 AHQE 149 >UniRef50_B9TNB4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TNB4_RICCO Length = 162 Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KEQLSALMDGE E L L + E + W +YHLI D MRGD + S+ Sbjct: 1 MKEQLSALMDGEVDLDENPHLYTALCKSDEAETCWSTYHLIGDVMRGDF--HAQNGVYSK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQ 84 +M +E EP + HQ Sbjct: 59 IMKQLESEPTVLAPRRRSLRERLQHQ 84 >UniRef50_B2I5Z9 Anti sigma-E protein, RseA n=7 Tax=Xylella fastidiosa RepID=B2I5Z9_XYLF2 Length = 241 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 32/173 (18%) Query: 5 QLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 QLS L+D E E LL L HN E+ E + L D +RG D + RV A Sbjct: 19 QLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVLRGVALAPAPTDFTLRVQA 78 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY 121 A+ E H+W+ + A V+ +++ + + Sbjct: 79 AVAAEAT---------PVRTKHRWR---------------GGTALIASVAAIILLTLHGW 114 Query: 122 NGQSETSQQPETPVFNT-----LPMMGKASPVSLGVPSEATANNGQQQQVQEQ 169 + + E T P+ K + +S + + +Q Sbjct: 115 PPMAPPLTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRGKTTHNQQ 167 >UniRef50_A6GP46 Sigma factor algU regulatory protein MucA, putative n=1 Tax=Limnobacter sp. MED105 RepID=A6GP46_9BURK Length = 216 Score = 77.2 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 34/199 (17%) Query: 3 KEQLSALMDGETLDSELLNELAH-NPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSRVM 60 EQ+SA++DGE ++EL L E +TW+ Y + D +R + D+ R+ Sbjct: 4 NEQISAMLDGELDEAELKLLLGAMGAEEAQTWQGYCAVGDLIRSSEMIAFHSPDLVGRIS 63 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 A++E EP L + + + R A V+ Sbjct: 64 ASLENEPTVVAPVLAAQMGRQTALQRVFAAGRSRRLL----------ASVAAVGFFSF-A 112 Query: 121 YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDY 180 N V A N +++ + + Sbjct: 113 LNQAIPPLDSQVQMVRTQ-----------------AVENTFTDEELALWQE----YFMAH 151 Query: 181 ELQRRLHSEQLQFEQAQTQ 199 + A+ + Sbjct: 152 QQNSIRGGLSGVSPIARVE 170 >UniRef50_B8KFU9 Anti-sigma factor MucA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KFU9_9GAMM Length = 208 Score = 77.2 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 59/201 (29%), Gaps = 23/201 (11%) Query: 4 EQLSALMDGET---LDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 E LSAL D E LL EL PE+ W H R +M G+ ++ V Sbjct: 20 ETLSALADNEAQELELRRLLRELESTPELGDRWYRLHAARAAMHGEAVRP-SAGFANSVR 78 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGV---AACVSLAVIVG 117 AAI+ EP Q + + V QL A V+ + Sbjct: 79 AAIDAEPALQQNSAGSFRRALGSFAVAASVAAVVVLGGQQLALTSAGGNADLVARVAPLP 138 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAML 177 V N Q + + + R+R+ Sbjct: 139 VGVVNTTGAVPVQASYGTRALPTLQ----------------PADRTAYRELARQRLRRYS 182 Query: 178 QDYELQRRLHSEQLQFEQAQT 198 Q++ L++ Q A+ Sbjct: 183 QEHAEHASLNTPQGMLPFARV 203 >UniRef50_B1XZN3 Anti sigma-E protein, RseA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZN3_LEPCP Length = 215 Score = 76.8 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 13/174 (7%) Query: 4 EQLSALMDGETLDSELLN---ELAHNPEMQKTWESYHLIRDSMRGDTPEVLHF---DISS 57 +++SAL+DGE +E+ + + ++ W +Y LI D +R Sbjct: 13 QRISALVDGELAAAEVADTCRAWRTDARLRADWHAYSLIGDVLRSTDLAHPPARDQAFLG 72 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAA----QLTQMGVAACVSLA 113 + + EPV Q AP V P A +T +G+AA V++ Sbjct: 73 ALRERLALEPVVLAPARPEPPQQAPAAAVVNGRPASVTPLRARRPRWVTPVGIAAGVAMV 132 Query: 114 VIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ 167 + +E QQ P P + + A ++Q++ Sbjct: 133 AGLAWTMRPPATEPLQQMARMAL--PPPSQPVEPAA-RAEAVAVLAPDTREQLE 183 >UniRef50_Q0AF64 Sigma-E factor negative regulatory protein RseA n=2 Tax=Nitrosomonas RepID=Q0AF64_NITEC Length = 191 Score = 76.0 bits (185), Expect = 7e-13, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 ++++S LMDGE D++ ++N + + + WE YH+IRDS+ V+ D+S + Sbjct: 1 MRKKVSELMDGELEDTDAVTIINVVKSDSSLFSDWEVYHIIRDSLHQ---SVISIDLSEK 57 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + + +EP+ Q + L VAA ++ + G Sbjct: 58 IRNKLIDEPLLLVPYSHKTHQNRKQK----------------LLGFSVAASIT-VLSAGW 100 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQ 162 + + + V+ T + KA+P + Sbjct: 101 LIFQSIEQHETALKE-VYVTEKINDKATPANEQRSLVTFQPAPS 143 >UniRef50_A1VRT8 Anti sigma-E protein, RseA n=2 Tax=Polaromonas RepID=A1VRT8_POLNA Length = 213 Score = 75.6 bits (184), Expect = 9e-13, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 27/214 (12%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGDTPEVLH------F 53 E LSAL D + + E L H+ + W +YHLI D +R Sbjct: 8 SELLSALADDQLGEEEFAAALDACGHDESALECWAAYHLIGDVLRSPAGPRAPMAVGAEL 67 Query: 54 DISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQL-TQMGVAACVSL 112 SR+ + +EP+ + + +A PA P + + + A V+ Sbjct: 68 AFVSRLNQRLAQEPLITASPVSNKALPAAPLQSVADQIHHRGPASNDGNFRWKLVAGVAS 127 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172 V +N + + +S + + + R Sbjct: 128 LAAVSAIAWNASGLLAPASVPQLAQA-----SSSQIVVTSSQGPVV----------RDAR 172 Query: 173 INAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVP 206 + +L + + LQ + A ++P Sbjct: 173 LEELLAAHRQFGA--ASALQESSGFLRNATFEMP 204 >UniRef50_B9TKU0 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKU0_RICCO Length = 151 Score = 74.5 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Query: 5 QLSALMDGETLDS---ELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMA 61 QLSAL+DGE + E+ + W YH+IRD +R + + D++SR+MA Sbjct: 1 QLSALVDGEVDVERCEHIFLAAKSTGEVAQAWRDYHVIRDVLREEC--WVESDMTSRIMA 58 Query: 62 AIEEEPVRQPATLIPEAQPAPHQWQKMP 89 +++EP + + H + Sbjct: 59 QLDDEPTMLVPQAVTVSDKVTHIRPRFS 86 >UniRef50_A6SXQ6 Anti sigma-E protein n=3 Tax=cellular organisms RepID=A6SXQ6_JANMA Length = 182 Score = 74.5 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 34/187 (18%) Query: 1 MQKEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRG-DTPEVLHFDISS 57 M +EQ+SA D E D + LA E + TW YH I D++R D L D ++ Sbjct: 6 MTREQISAFADNELSDGHVDIALAALRQQEGRDTWNMYHQIGDALRSDDLNTQLSADFNA 65 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 R+ A ++ E A ++ + A + V Sbjct: 66 RMFARLDAEATIMVPADKRGAVAKDAALRRFAMPAGMAAAVAVAAFLTV----------- 114 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAML 177 PV T + + V+ + + RI+ L Sbjct: 115 --------PQMMTSNAPVVTTAAVAPETITVA------------SKDGEVLRDPRIDDYL 154 Query: 178 QDYELQR 184 ++ Sbjct: 155 LAHQRFS 161 >UniRef50_A0Z441 Sigma factor algU negative regulatory protein MucA n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z441_9GAMM Length = 201 Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 47/216 (21%) Query: 2 QKEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE +SAL+DGE + ++ L + +PE + W+ R +R E D+S Sbjct: 7 MKESMSALIDGEGSELDIARVLKAVDEDPEARAHWQRIQQTRGLLRTGQIE-RQIDVSQA 65 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V ++E +P R+P L + VAA V+ A+++G Sbjct: 66 VRQSLESQPRRRP--------------------------LGPLGSLAVAASVTFAMVLGG 99 Query: 119 QHYNGQSETSQQPETPVFNTLPMM----GKASPVSLGVPSEATANNGQQQQV-------- 166 Q GQS +P+ +P A+PV + + Sbjct: 100 QAMVGQSP-LGSAASPIATAVPGGVVPIPGAAPVQARFGAPNPTMPTRSPATKTAPSGSS 158 Query: 167 ----QEQRRRINAMLQDYELQRRLHSEQLQFEQAQT 198 Q R R Q++ A+ Sbjct: 159 AIYNQLARERFERYAQEHARSTANFQPNSLVPFARL 194 >UniRef50_D0J1H7 Anti sigma-E protein, RseA n=2 Tax=Comamonas testosteroni RepID=D0J1H7_COMTE Length = 265 Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 52/255 (20%) Query: 1 MQKEQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISS 57 +++EQLSAL+DGE ++ L A + E Q++W YHLI D +R + DI S Sbjct: 9 IKQEQLSALVDGEASSVQMQAVLSYAESDEGQQSWAMYHLIGDVLRSPELAHHSQHDILS 68 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQW-----QKMPFWQKVRPWAAQLTQMGVAACVSL 112 V A +E EP+R A A Q ++ + T + + A + Sbjct: 69 GVRAHMEREPIRGIHLPGVTADVASSLSLGGLEQITAAEERGQALGNGATVVSLPARQAA 128 Query: 113 -AVIVGVQH-------------------------YNGQSETSQQPETPVFNTLPMM---- 142 A + + Y Q +P Sbjct: 129 NASVFRWKMAAGFASVAAVAAVGWGVMLAGSGGLYGRQGGAQLAALSPNAVVAAAPAASL 188 Query: 143 GKASPVSLG------------VPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQ 190 G + PVS G + Q V + R++ +L + Q + Sbjct: 189 GLSQPVSGGEETAMPLGSEAQSSTVVAVAGPNGQTVMLRDPRLDELLASHPQQS--SAPN 246 Query: 191 LQFEQAQTQQAAVQV 205 LQ + + A+ Sbjct: 247 LQMPASFLRNASFAT 261 >UniRef50_B6BUK1 Putative uncharacterized protein n=1 Tax=beta proteobacterium KB13 RepID=B6BUK1_9PROT Length = 155 Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 2 QKEQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 E +S+++D E +L + L N ++ +Y +I D MR D +V +++ ++ Sbjct: 1 MSENISSIIDNELKGKDLDHGLNELKNSSALSSYRTYQMISDVMRNDYYDVNP-ELTDKI 59 Query: 60 MAAIEEEPVRQPATLIPEAQP-APHQWQKMPFWQKVRPWAAQLTQMGV 106 M+ I +EP + I Q A ++K + AA V Sbjct: 60 MSKIHDEPTQFNNGFIHNNQSTATIDYRKYLLVFVLGLIAAFAISWAV 107 >UniRef50_Q3SH42 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH42_THIDA Length = 185 Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 21/163 (12%) Query: 6 LSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 LSAL+DGE+ +E L + + +++TW YHLI D MRG +R Sbjct: 23 LSALLDGESGRTESGAFLAAMRQDERLRRTWSEYHLIGDLMRG--VGPAPEGFMARFSER 80 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 + EP R A L + V VSL ++ Q Sbjct: 81 LAAEPTVLAPQR---------------HIWPQRVVVASLASLAVWGAVSLTGLMPSQT-P 124 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQ 165 + + P P F ++ S A+ Sbjct: 125 ESAPIASAPANPGFQQATLVAPVEYDSAQFAPYVVAHQEFAPS 167 >UniRef50_Q2P4M6 Regulatory protein n=14 Tax=Xanthomonadaceae RepID=Q2P4M6_XANOM Length = 299 Score = 69.8 bits (169), Expect = 5e-11, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 ++QLSAL+DGE LL LAH+ E+ E + L D +RG D ++RV Sbjct: 18 RQQLSALVDGELSADASRFLLRRLAHDEELAGCHERWQLCGDVLRGAASAPAPLDFAARV 77 Query: 60 MAAIEEEPVRQPATLIPEAQP 80 +AI EEP + Sbjct: 78 RSAIAEEPAPRAQPAARSGAR 98 >UniRef50_A6VUA1 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUA1_MARMS Length = 227 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 17/206 (8%) Query: 2 QKEQLSALMDGETLDSELLNELAHN-PEMQKTWESYHLIRDSMRGDTPEVLHFD--ISSR 58 LSA+ DGE + +L + + E+ + E+YHLI+ ++ D+ + + + R Sbjct: 35 MLSSLSAMFDGEATEQDLELLIDGDSAELSRQLEAYHLIQQALHKDSSVAVGLEDSLMLR 94 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 + A I+ + P W L+ + VAA V+ VI G Sbjct: 95 IRAGIDVDASFPEEQNTNNLLP---FVLPSENNIARPVWRVALSSVAVAASVAFVVIFGG 151 Query: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQ 178 T+ V + S + + +Q R+ L+ Sbjct: 152 NALLTPDATAPNLVAEVRS-----------SSSNMAVTPLAELDKDALQIDNVRLQHYLR 200 Query: 179 DYELQRRLHSEQLQFEQAQTQQAAVQ 204 + Q + Q A+ V+ Sbjct: 201 QHAEQAAMTVGQGMIPMARVVSYPVK 226 >UniRef50_Q7NWD1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NWD1_CHRVO Length = 160 Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 22/132 (16%) Query: 2 QKEQLSALMDGETL---DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSR 58 KE +SALMDGE + + +A + ++ WE YHLI D+MR + ++ ++ Sbjct: 1 MKETISALMDGELDGPDADKAIAAIAGDKDLDDAWEQYHLIGDAMR--ANRLSSLNVRAK 58 Query: 59 VMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGV 118 V A + EEP + A A +VG Sbjct: 59 VAARLAEEPTVLAPRRWTRPRKARAASAVALAASVS-----------------FAAVVGW 101 Query: 119 QHYNGQSETSQQ 130 Q + ++ Sbjct: 102 QQLSHRNAPPSA 113 >UniRef50_Q1LKM5 Anti sigma-E protein RseA n=10 Tax=Burkholderiaceae RepID=Q1LKM5_RALME Length = 218 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 11/181 (6%) Query: 4 EQLSALMDGETLDSELLNEL--AHNPEMQKTWESYHLIRDSMRGDTPEVLHF--DISSRV 59 EQ+SALMDGE ++ L A + W Y LI D+MR + SR Sbjct: 16 EQISALMDGELAPHDVDAALGLAKDDAGMADWSMYQLIGDAMRSEELTHAGSTEAFLSRF 75 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A +E EP + + + + ++V P A + + V + + G Sbjct: 76 SAQLEAEPHVLVPAVAQAGR--HRLLVRPSWVRRVVPGTAIAAAVAAVSWVVVPQMRGPG 133 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 E P T+ A + + + + + + R++ L+ Sbjct: 134 GVGAPDAVVASVEQPAGATVKAGVAAPAAAGSIMAVSADSAQ-----MIRDPRLDEYLRA 188 Query: 180 Y 180 + Sbjct: 189 H 189 >UniRef50_A4GHT7 Putative uncharacterized protein n=1 Tax=uncultured marine bacterium EB0_39H12 RepID=A4GHT7_9BACT Length = 222 Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 2 QKEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 KE++SAL DGE + E +L E++ NPE ++ W + L +++ D + D+S Sbjct: 1 MKEKISALADGELSEFETRRVLEEISSNPEYREFWRNIQLSKETFNEDDVMLNSRDLSE 59 >UniRef50_A7LQ63 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus influenzae RepID=A7LQ63_HAEIN Length = 61 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLH 52 MQKEQLSA MDGE + ++L + L + E+Q +W S+H +R MR ++ L Sbjct: 1 MQKEQLSAYMDGEQVKTDLTDALLRDEELQASWHSFHTVRSVMRKESAVFLG 52 >UniRef50_Q608M0 Conserved domain protein n=1 Tax=Methylococcus capsulatus RepID=Q608M0_METCA Length = 168 Score = 64.1 bits (154), Expect = 3e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 15/124 (12%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 ++ S +D E +E L + +++ T Y+LI + +R + ++ V Sbjct: 8 QKASVFVDNEMDPTEAEGYLRLIEKREDVRSTVSRYYLIGEVLRTGR-APVGNGLAEAVA 66 Query: 61 AAIEEEPVRQPATLIPEAQP-----------APHQWQKMPFWQKVRPWAAQLTQMGVAAC 109 I EP + + A + W+ V +AA + A Sbjct: 67 RRITLEPTIFAPARVRTSDRLRRHIVTGALAASMAAVAVFVWRGVSGFAAMDGGLSAGAG 126 Query: 110 VSLA 113 V+LA Sbjct: 127 VALA 130 >UniRef50_B2JFJ6 Anti sigma-E protein, RseA n=58 Tax=Burkholderia RepID=B2JFJ6_BURP8 Length = 217 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 20/209 (9%) Query: 2 QKEQLSALMDGETLDSELLNELAH--NPEMQKTWESYHLIRDSMRGDTPEVLHF---DIS 56 E LSA +DGE D E N + + + + W YHLI D++R D V Sbjct: 21 HAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLIGDALRSDDLAVSPATSSAFL 80 Query: 57 SRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 + A E E +P A+ +++ V AA LT Sbjct: 81 AGFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAAAAATLT-------------- 126 Query: 117 GVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQ-EQRRRINA 175 + + T V + P V++ AT + + ++ Sbjct: 127 WIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAMASMPAATTAQAEVSDGNIIRDASLDQ 186 Query: 176 MLQDYELQRRLHSEQLQFEQAQTQQAAVQ 204 L+ ++ + Q Sbjct: 187 YLEAHQQFGLQPVVSGSMPLLRAASLTTQ 215 >UniRef50_C6M5L2 Putative anti sigma-E protein RseA n=2 Tax=Neisseria RepID=C6M5L2_NEISI Length = 182 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 16/176 (9%) Query: 9 LMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM-----AAI 63 LMDG+ + E+L+ L + + W YHL+ D MR D A I Sbjct: 2 LMDGDQVSEEMLDRLLSDDAAAEAWYEYHLLGDCMRYKEGTGRDADFMQSAAFTATLAEI 61 Query: 64 EEEPVRQPATLIPEAQPAPHQWQKM-----------PFWQKVRPWAAQLTQMGVAACVSL 112 EE ++ + P + Q V Q + Sbjct: 62 SEEHKQRHEAEVAAVMPVVKEVQAANSSFFKSFAVAASVAAVAVAVWQFGPQVKGDSSGM 121 Query: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQE 168 V+ N Q P + + + QVQ+ Sbjct: 122 VAEKAVETKNQQENIVPVAANPTAKNASDAVVMPESAKNDKGVSQTTVRTETQVQQ 177 >UniRef50_C7HX16 Anti sigma-E protein, RseA n=1 Tax=Thiomonas intermedia K12 RepID=C7HX16_THIIN Length = 269 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 66/243 (27%), Gaps = 40/243 (16%) Query: 1 MQKEQLSALMDGETL----------DSELLNELAHNPEMQKTWESYHLIRDSMRGD--TP 48 M +EQLSALMD E + + +A + ++ W Y I D +R TP Sbjct: 5 MSREQLSALMDAEGEYRGQSARTEATAAFIRHVASDEAARRDWLIYAQIGDVLRSADLTP 64 Query: 49 EVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVR------------- 95 D RV AAI EP+ + + A + Sbjct: 65 MPDEADFLQRVSAAIAREPIVLQPQAVTQTAAAVDRSSASAHRSAAHRRPHWSTRMAAGM 124 Query: 96 --------------PWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPM 141 P G A V+ ++G + ++T + Sbjct: 125 AAVAGVAVMAWVALPGLQNADSSGAAPTVASVGVLGSKGQIPVADTQIAAPLNPAARAGL 184 Query: 142 MGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQA 201 + E Q V EQ + L ++ + + Sbjct: 185 IQADLSAQSPQRGEGGQGATQLVPVSEQMPMVE-YLLAHQQMAGGMMPAVPATLQWVRNR 243 Query: 202 AVQ 204 V+ Sbjct: 244 PVE 246 >UniRef50_UPI00016A9B00 sigma factor algU regulatory protein MucA, putative n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A9B00 Length = 93 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Query: 2 QKEQLSALMDGETLDSELLNELAHN--PEMQKTWESYHLIRDSMRGDTPEVLHFD---IS 56 Q+E++SAL+DGE + L ++ + W YH+I D++R D + + Sbjct: 8 QRERVSALVDGEAPEGLSLKQILAGLGDAERAAWAHYHVIGDALRSDELTLEPAESGAFM 67 Query: 57 SRVMAAIEEEPVRQPATLIPEAQPA 81 +R+ A++ EP A Sbjct: 68 ARLSASLAAEPHLLAPPPRRRASAV 92 >UniRef50_Q2KW15 Sigma-E factor negative regulatory protein n=5 Tax=Bordetella RepID=Q2KW15_BORA1 Length = 161 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRG-DTPEVLHFDISSRVMAA 62 E +SA MDGE + + L++L +P+ +KTW+ YHLI D++R D + +R+ A Sbjct: 16 ESVSAWMDGEGSE-DFLHQLV-SPQGRKTWDEYHLIGDALRSADLMITPSANFQARLSRA 73 Query: 63 IEEE-PVRQPATLIPE 77 +E E P+ Sbjct: 74 LEAELPIVAAPRRRSP 89 >UniRef50_C0EK24 Putative uncharacterized protein n=3 Tax=Neisseria RepID=C0EK24_NEIFL Length = 186 Score = 52.9 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 4 EQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVL 51 E +SALMDGE L E+ + + + E + W YH+I D +R + Sbjct: 14 EYVSALMDGEALTDEMPDAVLADEEALRAWHEYHIIGDCIRQSAAASV 61 >UniRef50_Q6J0U5 MucA n=2 Tax=Pseudomonas aeruginosa RepID=Q6J0U5_PSEAE Length = 138 Score = 47.1 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 3 KEQLSALMDGETLDSELLNELA---HNPEMQKTWESYHLIRDSMRGD 46 +E LSA+MD E + EL LA + E++ TW Y L R M + Sbjct: 7 QETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHRE 53 >UniRef50_D0KYN0 Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN0_HALNC Length = 220 Score = 46.0 bits (107), Expect = 8e-04, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 66/185 (35%), Gaps = 12/185 (6%) Query: 4 EQLSALMDGETLDSELLNELA-HNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 E +SA D E + + ++ +++++ Y LI ++R + ++ D+S+ + A Sbjct: 17 EAISAWWDDECMPHQTDRLMSLAENDVRQSLRCYSLIGAALRLE--QLDKRDVSALISAR 74 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVR---PWAAQLTQMGVAACVSLAVIVGVQ 119 + ++ + A + + P Q R W + VA V + + + Q Sbjct: 75 LAQDEGQAQQLAQHLASTSGGRVLPFPQSQVRRSMNRWRGAIAASFVAGLVGVGIWMMPQ 134 Query: 120 HYNGQSETSQQPETPVFNTLPMMGK----ASPVSLGVPSEATANNGQQQQVQEQRRRINA 175 + + Q P G A PV V + Q ++ ++ Sbjct: 135 NAPENALIQQARNVPASLQQSANGNNAAQALPVVARVTPDTILPGWAQGSARKAP--MDP 192 Query: 176 MLQDY 180 L + Sbjct: 193 YLMTH 197 >UniRef50_B8KRG1 Anti-sigma factor MucA, putative n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG1_9GAMM Length = 192 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 36/183 (19%) Query: 3 KEQLSALMDGETLDSEL---LNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 +E LSA+ DGE D +L L + +P +++ W R Sbjct: 10 REALSAIGDGEGTDLDLARVLKAVDEDPSVREEWLRQQQTR------------------- 50 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 A I +P E + + K + L + VAA V+LAV+ G Q Sbjct: 51 -ARITRQPAV-------EIDVSAAVSAAIAAAPKQQRRYNPLVGVAVAASVTLAVVFGGQ 102 Query: 120 HYNGQSETSQQ---PETPVFNTLPMM---GKASPVSLGVPSEATANNGQQQQVQEQRRRI 173 +P+ G V + + A+ Q R + Sbjct: 103 FALQTGSAPLAEVPGGVMSLQGMPVQASYGSNDRVLGRLERPSPASTPVNPYSQLAREQY 162 Query: 174 NAM 176 + Sbjct: 163 QRL 165 >UniRef50_C4KZK7 Putative uncharacterized protein n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZK7_EXISA Length = 211 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 13/159 (8%) Query: 9 LMDGETLDS-ELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAAIEEEP 67 L DG + + L +L + E+ +++ Y I ++ L D ++RVMAA+ E P Sbjct: 11 LEDGVLPEESDELRQLLEDDELYESYLQYERIDAELKALPRPKLSADFTARVMAALPETP 70 Query: 68 VRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSET 127 V+ + + +K Q W + + ++ + + Sbjct: 71 VQTAPDPVVPFSKPVRKERKPHSKQ--MQWLQRHPGL-----IAAVLFFSLMSSATLGLW 123 Query: 128 SQQPETPVFNTLPM-----MGKASPVSLGVPSEATANNG 161 S ET + +P P + V + T G Sbjct: 124 SSASETMTYTKVPGVIVSENEVIVPAGVTVEKDITVQGG 162 >UniRef50_B7J9J6 Conserved domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J9J6_ACIF2 Length = 220 Score = 43.3 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 12/202 (5%) Query: 2 QKEQLSALMDGETL---DSELLNELAHNPEMQKTWESYHLIRDSMR--GDTPEVLHFDIS 56 QKE + A M+GE S L + +++ WES + + ++ G + + Sbjct: 6 QKELM-AFMEGELSGLRASRLAARMQCESGLREAWESQYRVSFLLQNDGKGVRLASAGFA 64 Query: 57 SRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIV 116 RV AI EP + W K V + L + V +V Sbjct: 65 DRVAWAIVNEPSLLAPQRPLRQGSSRSFWVKTGSVAAVLVVSVTLVGLLPHQGVGPSVAG 124 Query: 117 GVQHYNGQSETSQQPETPVFNTLPMMGKASPVS-LGVPSEATANNGQQQQVQEQRRRINA 175 G G +Q F+T SPV+ P T Q+ + Sbjct: 125 G-----GSGHYAQTAVLRGFSTRGEEFHLSPVADFASPPVGTNVVIQRDIQRLWVPGGGN 179 Query: 176 MLQDYELQRRLHSEQLQFEQAQ 197 L + S Q E A Sbjct: 180 YLVSSRIPSAYASGQSGLESAA 201 >UniRef50_A4BBJ1 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ1_9GAMM Length = 166 Score = 42.5 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 46/198 (23%) Query: 3 KEQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 E SA +DGE + + LL + +P+ + W ++ S++GDT + Sbjct: 5 NESFSAFLDGEASELDIQRLLKAMDEDPQSIQQWHDLSKVKASLQGDTVVDTALN----- 59 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQ 119 P + + P + W VQ Sbjct: 60 --------------------RQPGKVETTPAEARSPFWLRL-----------------VQ 82 Query: 120 HYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINAMLQD 179 + + N + ++GV + Q QQ ++R+ L++ Sbjct: 83 GGIAATVAAATVAVIGLNQTQSVSP-EVATVGVDDDVPLTVEQVQQQVAAQQRLTEYLKN 141 Query: 180 YELQRRLHSEQLQFEQAQ 197 + Q S + Sbjct: 142 HAEQASFTSGHVVVPAEP 159 >UniRef50_C3X7H9 Predicted protein n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X7H9_OXAFO Length = 107 Score = 42.1 bits (97), Expect = 0.011, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 1 MQKEQLSALMDGETLDSELLNELAHNP-EMQKTWESYHLIRDSMRGDTPEVLHFD-ISSR 58 M+KE +SA +D E + E N E+++ Y +I +S+R + +V D +R Sbjct: 9 MKKELISAFVDSELDEKESEQLQNENRHELKEHVNVYRVIGESIRYNQSQVQVSDQFQAR 68 Query: 59 VMAAIEEE 66 + A++ E Sbjct: 69 LKEALQNE 76 >UniRef50_UPI00016C377E hypothetical protein GobsU_01197 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377E Length = 459 Score = 41.7 bits (96), Expect = 0.015, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 4 EQLSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVM 60 + ++A +DGE E LA + E Q + R + TP FD+ +R+M Sbjct: 7 QLITAAVDGELSADEARAFRTLLASSTEAQSLFAKLEADRARVLALTPVAPPFDLHTRIM 66 Query: 61 AAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQH 120 I + +P + VAA + L V +G Sbjct: 67 GQIAA--ATPAPHVKRARPALVPASVIVPLSRVYPARRRTWVPAAVAAGLLLGVALGSFA 124 Query: 121 YNGQSETSQQPETPV-FNTLPM 141 + + SQQ P NTLP Sbjct: 125 FFRNNTPSQQFAQPQWSNTLPA 146 >UniRef50_Q47K82 Putative uncharacterized protein n=1 Tax=Thermobifida fusca YX RepID=Q47K82_THEFY Length = 282 Score = 41.7 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 14/180 (7%) Query: 4 EQLSALMDGETLD----SELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRV 59 E L+ +GE D ++ LA + E + + + + + + R+ Sbjct: 8 ETLALFAEGELNDKAKEEQVRAWLAESEEARAQLSALREVSQILASAPVPPMPEGLVDRI 67 Query: 60 MAAIEEEPVRQPATLIPEAQPAPH---QWQKMPFWQKVRPWAAQLTQMGVAACVS----- 111 A+ E + A P P + P + P + +A V Sbjct: 68 DEALRAEAKKHAARSRPAVAPEASIDETAKVRPLPRPRGPARWMPFLVAASAAVFVLGAG 127 Query: 112 LAVIVGVQHYNGQSETSQQPETPVFNTLPMMGK--ASPVSLGVPSEATANNGQQQQVQEQ 169 A + G+ + ++ E P ++ S VS G A Q V E+ Sbjct: 128 AAAVSGLFTADPPADPGTAAEPPPASSPHAALPYRISVVSSGTDYTADNLATQGASVLER 187 >UniRef50_C6NRW8 Putative uncharacterized protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRW8_9GAMM Length = 223 Score = 40.6 bits (93), Expect = 0.037, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 8 ALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTP--EVLHFDISSRVMAA 62 A M GE E + L + + WE H + ++ D ++RV AA Sbjct: 11 AFMAGELQGLEAERMAQRLEREAALAEAWERQHRVSFLLQQGRSGQRPAPADFAARVRAA 70 Query: 63 IEEE 66 I E Sbjct: 71 IALE 74 >UniRef50_D1T9C4 Putative transmembrane anti-sigma factor n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1T9C4_9BURK Length = 302 Score = 40.2 bits (92), Expect = 0.055, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 9/188 (4%) Query: 5 QLSALMDGETLDSELLN---ELAHNPEMQKTWESYHLIRDSMRGDTPEVLH--FDISSRV 59 LSA +DGE D + +L +P+ ++ + ++R + + Sbjct: 18 SLSAYVDGELTDEQRAAVETQLRQHPQAAARVAAWRAQKAALRALCGVPGSDAWHAQAGQ 77 Query: 60 MAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMG--VAACVSLAVIVG 117 A E++ + PA + ++ RPW + + A LA+++G Sbjct: 78 GADYEQQAAESGERRYAGSPPAEAEEPAFIVVRRARPWWQRAGLAACWLVAGAGLALVLG 137 Query: 118 V--QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRRINA 175 G + + + F + A A + ++ + +R+N Sbjct: 138 PFAPRLTGGAWSGFGGQPAGFAQRADVAYAVYSPERRHPVEVAASEEEHLIAWLSKRLNR 197 Query: 176 MLQDYELQ 183 L LQ Sbjct: 198 PLSVPSLQ 205 >UniRef50_A6NW07 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW07_9BACE Length = 360 Score = 39.8 bits (91), Expect = 0.071, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 18/168 (10%) Query: 6 LSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 LSA +DG E L L+H P+ + + +M G E ++ RVMA Sbjct: 11 LSARLDGALTPEEAAGLEEHLSHCPDCRALAADLEEMHAAMPGLYQEPPP-ELKERVMAQ 69 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHYN 122 I E E +K + R W A M V ++A+ G Sbjct: 70 IRAE---------SEPISLEEVRKKRSGRKVWRSWGAMAAVMAVVFMSAVAMRFG----- 115 Query: 123 GQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQR 170 G +++ PE +L + S +++ + V E+ Sbjct: 116 GSGDSAGIPENEPVQSLTVSSAQPETSEPAAADSLPVEEKTAIVDEEN 163 >UniRef50_B8GD42 Putative transmembrane anti-sigma factor n=3 Tax=Chloroflexus RepID=B8GD42_CHLAD Length = 239 Score = 39.4 bits (90), Expect = 0.080, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 30/144 (20%) Query: 6 LSALMDGETLDSE---LLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62 LSA +D E ++E L LAH+ +++ E RD +R + Sbjct: 18 LSAYIDSELTEAERTALEQRLAHDSRLRRELEELQATRDLLREQPWLTPPRSFT------ 71 Query: 63 IEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVGVQHY- 121 P + W + + L ++ G Q Sbjct: 72 -----------------LTPEMAGVRQRRFNLVNWWQPFGGLV---ALVLLILFGWQMLR 111 Query: 122 NGQSETSQQPETPVFNTLPMMGKA 145 NG T + T+P A Sbjct: 112 NGIQSTDAPATVMMAQTVPAREPA 135 >UniRef50_A1BAS8 Putative uncharacterized protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS8_PARDP Length = 242 Score = 39.4 bits (90), Expect = 0.089, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 21/150 (14%) Query: 1 MQKEQLSALMDGETL---DSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISS 57 + E L AL DGE E+ +A +P++Q + R + Sbjct: 19 IDDETLMALADGELDPARADEIRRAVAGDPDLQARLHRFEETRRLL-------------G 65 Query: 58 RVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSLAVIVG 117 + E A P P Q P RPW A V + Sbjct: 66 GLRKDATGEDPLAAMIRAAAAAPHPVQEAPRPANLNRRPWLAAAASAAVV----ALGLGW 121 Query: 118 VQHYNGQSETSQQPETPVFNTLPMMGKASP 147 Q + + E +L G+ P Sbjct: 122 WQWTDAPAPGIGAAELAALESL-SSGQVQP 150 >UniRef50_D2CKL7 CppK n=3 Tax=Bacteria RepID=D2CKL7_PSEAH Length = 2031 Score = 39.4 bits (90), Expect = 0.095, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 38/133 (28%) Query: 38 LIRDSMRGDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPW 97 L+ + + + + P TL +A + W Sbjct: 368 LLGSVKSNLGHTQAAAGAAGVIRTVLALQHRTLPRTLHVDAPSSHVDWSAGAVRLLTGQT 427 Query: 98 AAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAT 157 A T A VS I G + + P P +T+P P ++ P A Sbjct: 428 AWPDTGRARRAGVSSFGISGTNAHVVLEQAPTDPAEPTGSTVPTGPAVRPQAVAWPVSAR 487 Query: 158 ANNGQQQQVQEQR 170 + Q++ R Sbjct: 488 SATALDAQLERVR 500 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.305 0.121 0.307 Lambda K H 0.267 0.0372 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,049,928,506 Number of Sequences: 3077464 Number of extensions: 35136694 Number of successful extensions: 357876 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 437 Number of HSP's successfully gapped in prelim test: 884 Number of HSP's that attempted gapping in prelim test: 334047 Number of HSP's gapped (non-prelim): 17127 length of query: 216 length of database: 1,040,396,356 effective HSP length: 123 effective length of query: 93 effective length of database: 661,868,284 effective search space: 61553750412 effective search space used: 61553750412 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 90 (39.4 bits)