Phyre 2 alignment of P24177 with d2gufa1

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Job Description | P24177
Confidence | 10.64% | Date | Wed Jan 25 15:20:44 GMT 2012
Rank | 98 | Aligned Residues | 40
% Identity | 28% | Template | d2gufa1
SCOP info | Transmembrane beta-barrels | Porins | Ligand-gated protein channel
Resolution | 1.95

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | K | Q | D | I | A | D | Y | V | A | S | N | I | Q | D | P | L | S | R | V | N | G | V | . | . | . | . | . | G | D | I | D | A | Y | G | . | S | Q | Y | S | M | R | I | W | L | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | R | Q | D | I | D | R | W | Q | S | T | S | V | N | D | V | L | R | R | L | P | G | V | D | I | T | Q | L | S | S | I | F | I | R | G | T | N | A | S | H | V | L | V | L | I | D
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | T |  | S | S | S |  |  |  |  | T | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | G | G | G |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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