Phyre 2 alignment of P24177 with d1iwga6

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Job Description | P24177
Confidence | 99.08% | Date | Wed Jan 25 15:20:44 GMT 2012
Rank | 9 | Aligned Residues | 88
% Identity | 75% | Template | d1iwga6
SCOP info | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Resolution | 3.50

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 723 | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | Q | L | Q | I | D | I | D | Q | R | K | A | Q | A | L | G | V | A | I | D | D | I | N | D | T | L | Q | T | A | W | G | S | S | Y | V | N | D | F | M | D | R | G | R | V | K | K | V | Y | V | Q | A | A | A | P | Y | R | M | L | P | D | D | I | N | L | W | Y | V | R | N | K | D | G | G | M | V | P | F | S | A | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | Q | F | K | I | D | I | D | Q | E | K | A | Q | A | L | G | V | S | I | N | D | I | N | T | T | L | G | A | A | W | G | G | S | Y | V | N | D | F | I | D | R | G | R | V | K | K | V | Y | V | M | S | E | A | K | Y | R | M | L | P | D | D | I | G | D | W | Y | V | R | A | A | D | G | Q | M | V | P | F | S | A | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | G | G | G | S | S | S | G | G | G | G | T | T |  |  |  |  |  | T | T | S |  |  |  |  | G | G | G | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 725 | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | .
|  | 803 | . | . | . | . | . | . | 810
Predicted Secondary structure |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |
Query Sequence |  | A | T | S | R | W | E | T | G
Query Conservation |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |
Template Sequence |  | S | S | S | R | W | E | Y | G
Template Known Secondary structure |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |
|  | 805 | . | . | . | . | 810 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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